Psyllid ID: psy11068

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
Protein Sequence
MPVATASSDSEGKTEELNKEIDDEEDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSFLSTQEF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHcccccccHHHcccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccHHHHcccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccHHHHHHccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHEHccccccccccccccccccEccccHHHEHEccccccccEEEccccccccEccccHHHHHHHHccccccccccccccccccccccEccccHHHHHHHHcccccccccEEcccccccEccccHHHHHHHHcccccccEcccccccccEccccHHHHHHHHccccccccccccHHccccEccccHHHHHHHHcccccccccccccccccccccHHHHHHHHHcccccccEEccccccccEccccHHHHHHHHHccccccEEEcccccccEEcccccc
Coil and Loop (DISEMBL)
mpvatassdsegkteelnkeiDDEEDAITEALQSLginkeyfisstggknskkqqlwscpivncnftsvnlNTFKIHLLkhfdkrpfkcklttanntpcmwgffskhkLLRHmtshdedkkcypcdqkncnkrfTTLSNLKMhmvrhgkpltlcceelgcgrkfqtMKQYSTHLkehsnvsapymcdykgcgksFYLMASLKShqrvhvtnpedlvckgcgkqfkvpcrlREHYKAVHestknfkctydgcklLFSTKSALKrhnkskhlnmrmfpcplvtcgksflstqef
Flexible Loop (DISEMBL)
mpvatassdsegkteelnkeiddeEDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDedkkcypcdqknCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVhestknfkctydGCKLLFSTKSALKRHNKskhlnmrmfpcplVTCGKSFLSTQEF
Low Complexity Region (SEG)
MPVATASSDSEGKTEELNKeiddeedaiteaLQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSFLSTQEF
Disordered region (IsUnstruct)
*******************************LQSLGINKEYFISS*******KQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF******
Disordered Region (DISOPRED)
******************************************ISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSFLST***
Disordered Region (DISEMBL)
*******************EIDDEEDAITEALQSLGINKEYFISS*********QLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSFLSTQEF
Disordered Region (DISPRO)
**VATASSDSEGKTEELNKEIDDEEDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSFL*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPVATASSDSEGKxxxxxxxxxxxxxxxxxxxxxLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSFLSTQEF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	292	2.2.26 [Sep-21-2011]
A2CE44	873	Zinc finger X-linked prot	yes	N/A	0.756	0.253	0.389	1e-36
P98169	803	Zinc finger X-linked prot	yes	N/A	0.756	0.275	0.385	1e-35
Q2QGD7	858	Zinc finger protein ZXDC	no	N/A	0.753	0.256	0.374	3e-35
Q8C8V1	858	Zinc finger protein ZXDC	no	N/A	0.773	0.263	0.369	3e-35
P98168	799	Zinc finger X-linked prot	yes	N/A	0.756	0.276	0.381	2e-34
P34694	339	Transcription factor IIIA	N/A	N/A	0.784	0.675	0.304	2e-24
P34695	335	Transcription factor IIIA	N/A	N/A	0.780	0.680	0.305	2e-22
P03001	366	Transcription factor IIIA	N/A	N/A	0.763	0.609	0.306	3e-22
P17842	339	Transcription factor IIIA	N/A	N/A	0.760	0.654	0.308	7e-22
Q8VHT7	364	Transcription factor IIIA	no	N/A	0.883	0.708	0.284	2e-21

>sp|A2CE44|ZXDAB_MOUSE Zinc finger X-linked protein ZXDA/ZXDB OS=Mus musculus GN=Zxda PE=2 SV=1

 Score =  153 bits (387), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/236 (38%), Positives = 124/236 (52%), Gaps = 15/236 (6%)

Query: 56  LWSCPIVNCNFTSVNLNTFKIHLLKHFD---KRPFKCKLTTANNTPCMWGFFSKHKLLRH 112
           L+ CP   C  T    +  K+HLL H     +RPFKC L+      C W F + +KL RH
Sbjct: 339 LYLCPEAQCGQTFAKKHQLKVHLLTHSSSQGQRPFKCPLSG-----CGWTFTTSYKLKRH 393

Query: 113 MTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYST 172
           + SHD+ +  + C  + C K FTT+ NLK HM  H +  +  CE   C   F T  + ST
Sbjct: 394 LQSHDKLRP-FGCPVQGCGKSFTTVYNLKAHMKGHEQENSFKCEV--CEESFPTQAKLST 450

Query: 173 HLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVC--KGCGKQFKVPCRL 230
           H + H     PY C + GC K+F  +++L SH R H    E   C   GC KQ+   CRL
Sbjct: 451 HQRSHFEPERPYQCAFSGCKKTFITVSALFSHNRAHFREQELFACSFPGCSKQYDKACRL 510

Query: 231 REHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
           + H ++ H   + F C +DGC   F++ S L RH K KH + R F CP+  CGKSF
Sbjct: 511 KIHLRS-HTGERPFLCDFDGCGWNFTSMSKLLRH-KRKHEDDRRFTCPVEGCGKSF 564

Cooperates with CIITA to promote transcription of MHC class I and MHC class II genes.
Mus musculus (taxid: 10090)

>sp|P98169|ZXDB_HUMAN Zinc finger X-linked protein ZXDB OS=Homo sapiens GN=ZXDB PE=2 SV=2

 Score =  150 bits (378), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/236 (38%), Positives = 122/236 (51%), Gaps = 15/236 (6%)

Query: 56  LWSCPIVNCNFTSVNLNTFKIHLLKHFD---KRPFKCKLTTANNTPCMWGFFSKHKLLRH 112
           L+ CP   C  T    +  K+HLL H     +RPFKC L       C W F + +KL RH
Sbjct: 270 LYLCPEAQCGQTFAKKHQLKVHLLTHSSSQGQRPFKCPLGG-----CGWTFTTSYKLKRH 324

Query: 113 MTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYST 172
           + SHD+ +  + C  + C K FTT+ NLK HM  H +  +  CE   C   F T  + S 
Sbjct: 325 LQSHDKLRP-FGCPAEGCGKSFTTVYNLKAHMKGHEQENSFKCEV--CEESFPTQAKLSA 381

Query: 173 HLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVC--KGCGKQFKVPCRL 230
           H + H     PY C + GC K+F  +++L SH R H    E   C   GC KQ+   CRL
Sbjct: 382 HQRSHFEPERPYQCAFSGCKKTFITVSALFSHNRAHFREQELFSCSFPGCSKQYDKACRL 441

Query: 231 REHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
           + H ++ H   + F C +DGC   F++ S L RH K KH + R F CP+  CGKSF
Sbjct: 442 KIHLRS-HTGERPFLCDFDGCGWNFTSMSKLLRH-KRKHDDDRRFMCPVEGCGKSF 495

Cooperates with CIITA to promote transcription of MHC class I and MHC class II genes.

Homo sapiens (taxid: 9606)

>sp|Q2QGD7|ZXDC_HUMAN Zinc finger protein ZXDC OS=Homo sapiens GN=ZXDC PE=1 SV=2

 Score =  149 bits (375), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 88/235 (37%), Positives = 120/235 (51%), Gaps = 15/235 (6%)

Query: 57  WSCPIVNCNFTSVNLNTFKIHLLKHFD---KRPFKCKLTTANNTPCMWGFFSKHKLLRHM 113
           + CP   C       +  K+HLL H     +RPFKC L       C W F + +KL RH+
Sbjct: 175 YRCPEPQCALAFAKKHQLKVHLLTHGGGQGRRPFKCPLEG-----CGWAFTTSYKLKRHL 229

Query: 114 TSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTH 173
            SHD+ +  + C    C K+FTT+ NLK HM  H +     CE   C  +F T  + S+H
Sbjct: 230 QSHDKLRP-FGCPVGGCGKKFTTVYNLKAHMKGHEQESLFKCEV--CAERFPTHAKLSSH 286

Query: 174 LKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVC--KGCGKQFKVPCRLR 231
            + H     PY CD+ GC K+F  +++L SH R H    E   C   GC KQ+   CRL+
Sbjct: 287 QRSHFEPERPYKCDFPGCEKTFITVSALFSHNRAHFREQELFSCSFPGCSKQYDKACRLK 346

Query: 232 EHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
            H ++ H   + F C  D C   F++ S L RH + KH + R F CP+  CGKSF
Sbjct: 347 IHLRS-HTGERPFICDSDSCGWTFTSMSKLLRHRR-KHDDDRRFTCPVEGCGKSF 399

Cooperates with CIITA to promote transcription of MHC class I and MHC class II genes.

Homo sapiens (taxid: 9606)

>sp|Q8C8V1|ZXDC_MOUSE Zinc finger protein ZXDC OS=Mus musculus GN=Zxdc PE=2 SV=1

 Score =  149 bits (375), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 89/241 (36%), Positives = 122/241 (50%), Gaps = 15/241 (6%)

Query: 51  SKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFD---KRPFKCKLTTANNTPCMWGFFSKH 107
           S     + CP   C  +    +  K+HLL H     +RPFKC L       C W F + +
Sbjct: 170 SAGSPAYRCPEPQCALSFAKKHQLKVHLLTHGSLQGRRPFKCPLDG-----CGWAFTTSY 224

Query: 108 KLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTM 167
           KL RH+ SHD+ +  + C    C K+FTT+ NLK HM  H +     CE   C  +F T 
Sbjct: 225 KLKRHLQSHDKLRP-FSCPVGGCGKKFTTVYNLKAHMKGHEQESLFKCEV--CAERFPTH 281

Query: 168 KQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVC--KGCGKQFK 225
            + ++H + H     PY CD+ GC K+F  +++L SH R H    E   C   GC KQ+ 
Sbjct: 282 AKLNSHQRSHFEPERPYKCDFPGCEKTFITVSALFSHNRAHFREQELFSCSFPGCNKQYD 341

Query: 226 VPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKS 285
             CRL+ H ++ H   + F C  D C   F++ S L RH K KH + R F CP+  CGKS
Sbjct: 342 KACRLKIHLRS-HTGERPFICDSDSCGWTFTSMSKLLRH-KRKHDDDRRFTCPVEGCGKS 399

Query: 286 F 286
           F
Sbjct: 400 F 400

Cooperates with CIITA to promote transcription of MHC class I and MHC class II genes.

Mus musculus (taxid: 10090)

>sp|P98168|ZXDA_HUMAN Zinc finger X-linked protein ZXDA OS=Homo sapiens GN=ZXDA PE=1 SV=2

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/236 (38%), Positives = 121/236 (51%), Gaps = 15/236 (6%)

Query: 56  LWSCPIVNCNFTSVNLNTFKIHLLKHFD---KRPFKCKLTTANNTPCMWGFFSKHKLLRH 112
           L+ CP   C  T    +  K+HLL H     +RPFKC L       C W F + +KL RH
Sbjct: 266 LYLCPEALCGQTFAKKHQLKMHLLTHSSSQGQRPFKCPLGG-----CGWTFTTSYKLKRH 320

Query: 113 MTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYST 172
           + SHD+ +  + C  + C K FTT+ NLK HM  H +  +  CE   C   F T  +   
Sbjct: 321 LQSHDKLRP-FGCPAEGCGKSFTTVYNLKAHMKGHEQENSFKCEV--CEESFPTQAKLGA 377

Query: 173 HLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVC--KGCGKQFKVPCRL 230
           H + H     PY C + GC K+F  +++L SH R H    E   C   GC KQ+   CRL
Sbjct: 378 HQRSHFEPERPYQCAFSGCKKTFITVSALFSHNRAHFREQELFSCSFPGCSKQYDKACRL 437

Query: 231 REHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
           + H ++ H   + F C +DGC   F++ S L RH K KH + R F CP+  CGKSF
Sbjct: 438 KIHLRS-HTGERPFLCDFDGCGWNFTSMSKLLRH-KRKHDDDRRFMCPVEGCGKSF 491

Cooperates with CIITA to promote transcription of MHC class I and MHC class II genes.

Homo sapiens (taxid: 9606)

>sp|P34694|TF3A_ANAAE Transcription factor IIIA OS=Anaxyrus americanus GN=gtf3a PE=2 SV=1

 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 116/263 (44%), Gaps = 34/263 (12%)

Query: 57  WSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH 116
           + C   +CN T       + HL KH  +RPF C         C  GF + H L RH+ SH
Sbjct: 12  FICSFPDCNATYNKNRKLQAHLCKHTGERPFPCTYEG-----CEKGFVTLHHLNRHVLSH 66

Query: 117 DEDKKCYPCDQKNCNKRFTTLSNLKMHMVR-HGKPLTL-CCEELGCGRKFQTMKQYSTHL 174
             +K C  C+ +NCN  FTT SN+++H  R H  P  +  C    CG++F+   Q   H 
Sbjct: 67  TGEKPC-KCETENCNLAFTTASNMRLHFKRAHSSPAQVYVCYFADCGQQFRKHNQLKIHQ 125

Query: 175 KEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNP---------------------- 212
             H+N   P+ C ++GC K +   + LK H++ H   P                      
Sbjct: 126 YIHTN-QQPFKCSHEGCDKCYASPSRLKRHEKTHAGYPCRKDSTCPFVGKTWSDYMKHAA 184

Query: 213 ---EDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKH 269
               ++ C  C + FK    L+EH K   E    ++C  + C   ++TK  LK H  + H
Sbjct: 185 ELHSEVTCSICNRTFKRKSFLKEHKKIHREERIVYRCPRENCDRTYTTKFNLKSHILTFH 244

Query: 270 LNMRMFPCPLVTCGKSFLSTQEF 292
            N+R F C    CGK+F   Q  
Sbjct: 245 ENLRPFVCEHEGCGKTFAMKQSL 267

Interacts with the internal control region (ICR) of approximately 50 bases within the 5S RNA genes, is required for correct transcription of these genes by RNA polymerase III. Also binds the transcribed 5S RNA's.

Anaxyrus americanus (taxid: 8389)

>sp|P34695|TF3A_RANPI Transcription factor IIIA OS=Rana pipiens GN=gtf3a PE=2 SV=1

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 118/265 (44%), Gaps = 37/265 (13%)

Query: 57  WSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH 116
           + C   +C+ +       + HL KH  +RPF C +       C  GF +   L RH  +H
Sbjct: 13  YICSFADCSASYNKNWKLQAHLCKHTGERPFPCTVEG-----CGKGFVTLFHLTRHSMTH 67

Query: 117 DEDKKCYPCDQKNCNKRFTTLSNLKMHMVR-HGKP-LTLCCEELGCGRKFQTMKQYSTHL 174
             +K C  CD  +C+  FTT++NL+ H  R H  P L   C    CG+ F+   Q   H 
Sbjct: 68  TGEKPC-KCDAPDCDLSFTTMTNLRKHYQRAHLSPSLIYECYFADCGQTFKKHNQLKLHQ 126

Query: 175 KEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNP---------------------- 212
             H+N   P+ C+++GC KSF   + LK H++VH   P                      
Sbjct: 127 YIHTN-QQPFKCNHEGCDKSFSSPSRLKRHEKVHAGYPCQKDSSCSFVGKTWTEYMKHLA 185

Query: 213 ----EDLVCKGCGKQFKVPCRLREHYKAVHESTKN-FKCTYDGCKLLFSTKSALKRHNKS 267
               E  +C  C ++FK    L++H K  HE  +  +KC  DGC   ++ K  L+ H  S
Sbjct: 186 ASHSEPTICDVCNRKFKNKTHLKDH-KRTHEVERVVYKCPRDGCDRTYTKKFGLQSHILS 244

Query: 268 KHLNMRMFPCPLVTCGKSFLSTQEF 292
            H + R F C    CGK+F   Q  
Sbjct: 245 FHEDSRPFACGHPGCGKTFAMKQSL 269

Interacts with the internal control region (ICR) of approximately 50 bases within the 5S RNA genes, is required for correct transcription of these genes by RNA polymerase III. Also binds the transcribed 5S RNA's.

Rana pipiens (taxid: 8404)

>sp|P03001|TF3A_XENLA Transcription factor IIIA OS=Xenopus laevis GN=gtf3a PE=1 SV=2

 Score =  105 bits (263), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 110/258 (42%), Gaps = 35/258 (13%)

Query: 57  WSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH 116
           + C   +C          + HL KH  ++PF CK        C  GF S H L RH  +H
Sbjct: 35  YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCK-----EEGCEKGFTSLHHLTRHSLTH 89

Query: 117 DEDKKCYPCDQKNCNKRFTTLSNLKMHMVR--HGKPLTLCCEELGCGRKFQTMKQYSTHL 174
             +K  + CD   C+ RFTT +N+K H  R  + K     C    CG+ F+   Q   H 
Sbjct: 90  TGEKN-FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQ 148

Query: 175 KEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNP---------------------- 212
             H+    PY C ++GC K F L + LK H++VH   P                      
Sbjct: 149 FSHTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 207

Query: 213 ---EDL-VCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSK 268
              +DL VC  C ++F+    LR+H K   +    + C  DGC   ++T   L+ H +S 
Sbjct: 208 ECHQDLAVCDVCNRKFRHKDYLRDHQKTHEKERTVYLCPRDGCDRSYTTAFNLRSHIQSF 267

Query: 269 HLNMRMFPCPLVTCGKSF 286
           H   R F C    CGK F
Sbjct: 268 HEEQRPFVCEHAGCGKCF 285

Acts as both a positive transcription factor for 5S RNA genes and a specific RNA binding protein that complexes with 5S RNA in oocytes to form the 7S ribonucleoprotein storage particle. May play an essential role in the developmental change in 5S RNA gene expression. Interacts with the internal control region (ICR) of approximately 50 bases within the 5S RNA genes, is required for correct transcription of these genes by RNA polymerase III. Also binds the transcribed 5S RNA's.

Xenopus laevis (taxid: 8355)

>sp|P17842|TF3A_XENBO Transcription factor IIIA OS=Xenopus borealis GN=gtf3a PE=2 SV=1

 Score =  104 bits (260), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 112/259 (43%), Gaps = 37/259 (14%)

Query: 57  WSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH 116
           + C   +C  +       + HL KH  ++PF CK        C  GF S H L RH  +H
Sbjct: 13  YICSFADCGASYNKNWKLRAHLCKHTGEKPFPCK-----EEGCDKGFTSLHHLTRHSITH 67

Query: 117 DEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLC---CEELGCGRKFQTMKQYSTH 173
             +K  + CD   C+  FTT +N+K H  R    L LC   C   GC + F+   Q   H
Sbjct: 68  TGEKN-FKCDSDKCDLTFTTKANMKKHFNRFHN-LQLCVYVCHFEGCDKAFKKHNQLKVH 125

Query: 174 LKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNP--------------------- 212
              H+    PY C ++GC KSF + + LK H++VH   P                     
Sbjct: 126 QFTHTQ-QLPYKCPHEGCDKSFSVPSCLKRHEKVHAGYPCKKDDSCLFVGKTWTLYLKHV 184

Query: 213 -----EDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKS 267
                E ++C  C + FK    LR H K   +    + C  DGC+  ++T+  L+ H +S
Sbjct: 185 KECHQEPVMCDECKRTFKHKDYLRNHKKTHKKERTVYCCPRDGCERSYTTEFNLQSHMQS 244

Query: 268 KHLNMRMFPCPLVTCGKSF 286
            H   R F C    CGKSF
Sbjct: 245 FHEEQRPFACEHAECGKSF 263

Interacts with the internal control region (ICR) of approximately 50 bases within the 5S RNA genes, is required for correct transcription of these genes by RNA polymerase III. Also binds the transcribed 5S RNA's.

Xenopus borealis (taxid: 8354)

>sp|Q8VHT7|TF3A_MOUSE Transcription factor IIIA OS=Mus musculus GN=Gtf3a PE=2 SV=2

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 124/295 (42%), Gaps = 37/295 (12%)

Query: 27  AITEALQSLGINKEYFISSTGGKNSKKQQLWS---CPIVNCNFTSVNLNTFKIHLLKHFD 83
           ++ EA+ SL I  + F+ +  G    +  L S   C   +C+ +         HL KH  
Sbjct: 6   SVAEAVSSLTI-ADAFVGACEGPAPPRPALPSRFICSFPDCSASYNKAWKLDAHLCKHTG 64

Query: 84  KRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMH 143
           +RPF C         C   F   + L RH+  H  +K  + C    CN++F T SNLK H
Sbjct: 65  ERPFVCDYEG-----CGKAFIRDYHLSRHVLIHTGEKP-FVCADDGCNQKFNTKSNLKKH 118

Query: 144 MVR-HGKPL-TLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASL 201
           + R HG P     C   GC + F+  +Q  TH  +H++    + C ++GCGK F   + L
Sbjct: 119 IERKHGNPQKQYVCSYEGCKKAFKKHQQLRTHQCQHTSEPL-FRCTHEGCGKHFASPSRL 177

Query: 202 KSHQRVHV------------------------TNPEDLVCKGCGKQFKVPCRLREHYKAV 237
           K H +VH                          + ED+ C  C + FK    L++H K  
Sbjct: 178 KRHGKVHEGYLCQKGCSFMGKTWTELLKHMREAHKEDITCNVCQRMFKRRDYLKQHMKTH 237

Query: 238 HESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSFLSTQEF 292
                 ++C   GC   ++T   L+ H  S H   R F C    CGK+F   Q  
Sbjct: 238 APERDVYRCPRQGCGRTYTTVFNLQSHILSFHEEKRPFVCEHAGCGKTFAMKQSL 292

Interacts with the internal control region (ICR) of approximately 50 bases within the 5S RNA genes, is required for correct transcription of these genes by RNA polymerase III. Also binds the transcribed 5S RNA's. May initiate transcription of the 5S ribosomal RNA gene and maintain the stability of transcription of other genes.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
328788295	1033	PREDICTED: hypothetical protein LOC10057	0.880	0.248	0.4	2e-48
332027659	997	Zinc finger X-linked protein ZXDB [Acrom	0.873	0.255	0.406	4e-48
322788189	1004	hypothetical protein SINV_08318 [Solenop	0.873	0.253	0.406	5e-48
350399130	1026	PREDICTED: hypothetical protein LOC10074	0.880	0.250	0.396	1e-47
340714417	1026	PREDICTED: hypothetical protein LOC10065	0.880	0.250	0.396	1e-47
307176119	945	Zinc finger X-linked protein ZXDB [Campo	0.873	0.269	0.402	6e-47
383863735	1034	PREDICTED: uncharacterized protein LOC10	0.873	0.246	0.395	3e-46
427792249	591	Putative zxd family zinc finger c, parti	0.773	0.382	0.368	3e-37
427790989	604	Putative zxd family zinc finger c, parti	0.784	0.379	0.363	3e-37
149446795	546	PREDICTED: zinc finger X-linked protein	0.866	0.463	0.358	5e-35

>gi|328788295|ref|XP_003251098.1| PREDICTED: hypothetical protein LOC100577295 [Apis mellifera]

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 108/270 (40%), Positives = 149/270 (55%), Gaps = 13/270 (4%)

Query: 25  EDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDK 84
           E  I+ AL+ LGI  +     +  +N K   +W CP  +CN     L   K HLL H+  
Sbjct: 448 EMVISNALEELGITDDNLQPVSVNENGK---IWLCPRDDCNRQFSKLYALKGHLLAHYGV 504

Query: 85  RPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 144
           RPFKC         C W F+S+ KL RH  +H + +K Y C+ + CN+RFTT+ NL  H 
Sbjct: 505 RPFKCDFEG-----CAWAFYSEFKLKRHKETHLK-RKDYVCEVEGCNRRFTTIYNLWSHA 558

Query: 145 VRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSH 204
             H +P  + C+   C  KFQT +    H+K H    APY+C ++GCGK +Y   +L SH
Sbjct: 559 KLHSRPNRILCQVPDCQEKFQTKRALELHMKTHDQSHAPYICKHEGCGKRYYSSNALTSH 618

Query: 205 QRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALK 262
           QR H     D+ C   GCGK F  PCRL+ H ++ H   K + CT+ GC+  FS+ S LK
Sbjct: 619 QRCHSYKEVDVKCSWPGCGKVFDKPCRLKAHIRS-HTGCKPYLCTFQGCQWAFSSSSKLK 677

Query: 263 RHNKSKHLNMRMFPCPLVTCGKSFLSTQEF 292
           RH K KH N R F C + +CGK+F+ ++  
Sbjct: 678 RHQK-KHTNERKFVCDVPSCGKAFMRSEHL 706

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027659|gb|EGI67727.1| Zinc finger X-linked protein ZXDB [Acromyrmex echinatior]

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 109/268 (40%), Positives = 147/268 (54%), Gaps = 13/268 (4%)

Query: 25  EDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDK 84
           E  I+ AL+ LGI  +        ++ K   +W CP   CN     L T K HLL H+  
Sbjct: 422 EIVISNALEELGITDDSLQPLCATEHDK---VWLCPRDGCNRQFGRLYTLKGHLLAHYGV 478

Query: 85  RPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 144
           RPFKC         C W F+S+ KL RH  +H + +K Y C+ + CN+RFTT+ NL  H 
Sbjct: 479 RPFKCDFEG-----CTWAFYSEFKLKRHKETHLK-RKDYVCEVEGCNRRFTTVYNLWSHA 532

Query: 145 VRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSH 204
             H +P  + C+   CG KFQT +    H+K H    APY+C ++GCGK +Y   +L SH
Sbjct: 533 KLHNRPNRIVCQVPDCGEKFQTKRALELHMKSHDQRHAPYVCQHEGCGKRYYSSNALTSH 592

Query: 205 QRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALK 262
           QR H     D+ C   GCGK F  PCRL+ H ++ H   K + CT+  CK  FS+ S LK
Sbjct: 593 QRSHSYKEVDIKCSWPGCGKIFDKPCRLKAHMRS-HTGYKPYPCTFQDCKWAFSSSSKLK 651

Query: 263 RHNKSKHLNMRMFPCPLVTCGKSFLSTQ 290
           RH K KH N R F C +  CGK+F+ ++
Sbjct: 652 RHQK-KHTNERKFVCDVPDCGKAFMRSE 678

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322788189|gb|EFZ13971.1| hypothetical protein SINV_08318 [Solenopsis invicta]

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 109/268 (40%), Positives = 147/268 (54%), Gaps = 13/268 (4%)

Query: 25  EDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDK 84
           E  I+ AL+ LGI  +        ++ K   +W CP   CN     L T K HLL H+  
Sbjct: 422 EIVISNALKELGITDDSLQPLCATEHDK---VWLCPRDGCNRQFGRLYTLKGHLLAHYGI 478

Query: 85  RPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 144
           RPFKC         C W F+S+ KL RH  +H + +K Y C+ + CN+RFTT+ NL  H 
Sbjct: 479 RPFKCDFEG-----CTWAFYSEFKLKRHKETHLK-RKDYVCEVEGCNRRFTTVYNLWSHA 532

Query: 145 VRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSH 204
             H +P  + C+   CG KFQT +    H+K H    APY+C ++GCGK +Y   +L SH
Sbjct: 533 KLHSRPNRIICQVPDCGEKFQTKRALELHMKSHDQRHAPYVCQHEGCGKRYYSSNALTSH 592

Query: 205 QRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALK 262
           QR H     D+ C   GCGK F  PCRL+ H ++ H   K + CT+  CK  FS+ S LK
Sbjct: 593 QRSHSYKEVDIKCSWLGCGKIFDKPCRLKAHMRS-HTGYKPYPCTFQDCKWAFSSSSKLK 651

Query: 263 RHNKSKHLNMRMFPCPLVTCGKSFLSTQ 290
           RH K KH N R F C +  CGK+F+ ++
Sbjct: 652 RHQK-KHTNERKFVCDVPNCGKAFMRSE 678

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399130|ref|XP_003485431.1| PREDICTED: hypothetical protein LOC100745564 [Bombus impatiens]

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 107/270 (39%), Positives = 150/270 (55%), Gaps = 13/270 (4%)

Query: 25  EDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDK 84
           E  I+ AL+ LGI+ +     +  ++ K   +W CP  +CN     L   K HLL H+  
Sbjct: 450 EMVISNALEELGISDDNLQPISVNEHGK---IWLCPRDDCNRQFSKLYALKGHLLAHYGV 506

Query: 85  RPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 144
           RPFKC         C W F+S+ KL RH  +H + +K Y C+ + CN+RFTT+ NL  H 
Sbjct: 507 RPFKCDFEG-----CAWAFYSEFKLKRHKETHLK-RKDYVCEVEGCNRRFTTIYNLWSHA 560

Query: 145 VRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSH 204
             H +P  + C+   C  KFQT +    H+K H    APY+C ++GCGK +Y   +L SH
Sbjct: 561 KLHTRPNRIVCQVPDCQEKFQTKRALELHMKSHDQSHAPYVCKHEGCGKRYYSSNALTSH 620

Query: 205 QRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALK 262
           QR H     D+ C   GCGK F  PCRL+ H ++ H   K + CT+ GC+  FS+ S LK
Sbjct: 621 QRCHSYKEVDVKCSWPGCGKVFDKPCRLKAHIRS-HTGCKPYLCTFQGCQWAFSSSSKLK 679

Query: 263 RHNKSKHLNMRMFPCPLVTCGKSFLSTQEF 292
           RH K KH N R F C + +CGK+F+ ++  
Sbjct: 680 RHQK-KHTNERKFVCDIPSCGKAFMRSEHL 708

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714417|ref|XP_003395725.1| PREDICTED: hypothetical protein LOC100650640 [Bombus terrestris]

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 107/270 (39%), Positives = 150/270 (55%), Gaps = 13/270 (4%)

Query: 25  EDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDK 84
           E  I+ AL+ LGI+ +     +  ++ K   +W CP  +CN     L   K HLL H+  
Sbjct: 450 EMVISNALEELGISDDNLQPISVNEHGK---IWLCPRDDCNRQFSKLYALKGHLLAHYGV 506

Query: 85  RPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 144
           RPFKC         C W F+S+ KL RH  +H + +K Y C+ + CN+RFTT+ NL  H 
Sbjct: 507 RPFKCDFEG-----CAWAFYSEFKLKRHKETHLK-RKDYVCEVEGCNRRFTTIYNLWSHA 560

Query: 145 VRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSH 204
             H +P  + C+   C  KFQT +    H+K H    APY+C ++GCGK +Y   +L SH
Sbjct: 561 KLHTRPNRIVCQVPDCQEKFQTKRALELHMKSHDQSHAPYVCKHEGCGKRYYSSNALTSH 620

Query: 205 QRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALK 262
           QR H     D+ C   GCGK F  PCRL+ H ++ H   K + CT+ GC+  FS+ S LK
Sbjct: 621 QRCHSYKEVDVKCSWPGCGKVFDKPCRLKAHIRS-HTGCKPYLCTFQGCQWAFSSSSKLK 679

Query: 263 RHNKSKHLNMRMFPCPLVTCGKSFLSTQEF 292
           RH K KH N R F C + +CGK+F+ ++  
Sbjct: 680 RHQK-KHTNERKFVCDIPSCGKAFMRSEHL 708

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176119|gb|EFN65817.1| Zinc finger X-linked protein ZXDB [Camponotus floridanus]

 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 108/268 (40%), Positives = 145/268 (54%), Gaps = 13/268 (4%)

Query: 25  EDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDK 84
           E  I+ AL+ LGI  +        ++ K   +W CP   CN     L T K HLL H+  
Sbjct: 357 EIVISNALEELGITDDSLQPVNVTEHDK---VWLCPRAGCNRQFGRLYTLKGHLLAHYGV 413

Query: 85  RPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 144
           RPFKC         C W F+S+ KL RH  +H + +K + C  + CN+RFTT+ NL  H 
Sbjct: 414 RPFKCDFQD-----CTWAFYSEFKLKRHKETHLK-RKDHVCQVEGCNRRFTTVYNLWSHE 467

Query: 145 VRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSH 204
             H +P  + C+   CG KFQT +    H+K H    APY+C ++GCGK +Y   +L SH
Sbjct: 468 KLHSRPNRIVCQVPNCGEKFQTKRALELHMKSHDQRHAPYVCQHEGCGKRYYSSNALTSH 527

Query: 205 QRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALK 262
           QR H     D+ C   GCGK F  PCRL+ H ++ H   K + CT+  CK  FS+ S LK
Sbjct: 528 QRSHSYKEVDIKCSWPGCGKVFDKPCRLKAHTRS-HTGCKPYHCTFQDCKWAFSSSSKLK 586

Query: 263 RHNKSKHLNMRMFPCPLVTCGKSFLSTQ 290
           RH K KH N R F C    CGK+F+ ++
Sbjct: 587 RHQK-KHTNERKFMCDAPDCGKAFMRSE 613

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863735|ref|XP_003707335.1| PREDICTED: uncharacterized protein LOC100877567 [Megachile rotundata]

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 106/268 (39%), Positives = 146/268 (54%), Gaps = 13/268 (4%)

Query: 25  EDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDK 84
           E  I+ AL+ LGI  +     +  +  K   +W CP  +C      L   K HLL H+  
Sbjct: 448 EMVISNALEELGITDDNLQPISISEQGK---VWLCPRDDCKRQFSKLYALKGHLLAHYGV 504

Query: 85  RPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 144
           RPFKC         C W F+S+ KL RH  +H + +K Y C ++ CN+RFTT+ NL  H 
Sbjct: 505 RPFKCDFEG-----CAWAFYSEFKLKRHKETHLK-RKDYICKREGCNRRFTTIYNLWSHE 558

Query: 145 VRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSH 204
             H +P  + C+   C  KFQT +    H+K H    APY+C ++GCGK +Y   +L SH
Sbjct: 559 KLHSRPNRILCQVPDCQEKFQTKRALELHMKSHDQSHAPYVCKHEGCGKRYYSSNALTSH 618

Query: 205 QRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALK 262
           QR H     D+ C   GCGK F  PCRL+ H ++ H   K + CT+ GC+  FS+ S LK
Sbjct: 619 QRCHSYKEIDVKCSWPGCGKVFDKPCRLKAHLRS-HTGCKPYLCTFQGCQWAFSSSSKLK 677

Query: 263 RHNKSKHLNMRMFPCPLVTCGKSFLSTQ 290
           RH K KH N R F C +  CGK+F+ ++
Sbjct: 678 RHQK-KHTNERKFVCDVPACGKAFMRSE 704

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427792249|gb|JAA61576.1| Putative zxd family zinc finger c, partial [Rhipicephalus pulchellus]

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 130/239 (54%), Gaps = 13/239 (5%)

Query: 51  SKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLL 110
           S  ++ + C +  C+         ++HLL H   RPFKC +       C W F +++KL 
Sbjct: 163 SAPRRRFPCTLEGCDRVFERGRQLRVHLLSHAACRPFKCAVDG-----CDWAFATEYKLK 217

Query: 111 RHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQY 170
           RH+ +H E KK + CD + C + FTT+ NL+ HM  HG+P+   C   GC + F T ++ 
Sbjct: 218 RHLETH-EGKKDFMCDVEGCGQHFTTVYNLRAHMKLHGRPM-FGCPSPGCSQVFGTRRKM 275

Query: 171 STHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVC--KGCGKQFKVPC 228
             HL+EH  + APY C  +GCGK++Y   +L SH RVH   PE+L C    CG+ F   C
Sbjct: 276 ELHLREHQELDAPYRCTEEGCGKAYYSSNTLASHLRVHQHRPEELCCPFPECGRAFGRAC 335

Query: 229 RLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSFL 287
           +LR H +  H   + + C+   C   F++ S L RH + KH   R + CP   CGK+F+
Sbjct: 336 KLRLHLRQ-HTGERPYACS--SCSWTFASASKLTRHMR-KHTGDRRYVCPEPGCGKAFM 390

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427790989|gb|JAA60946.1| Putative zxd family zinc finger c, partial [Rhipicephalus pulchellus]

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 88/242 (36%), Positives = 131/242 (54%), Gaps = 13/242 (5%)

Query: 51  SKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLL 110
           S  ++ + C +  C+         ++HLL H   RPFKC +       C W F +++KL 
Sbjct: 163 SAPRRRFPCTLEGCDRVFERGRQLRVHLLSHAACRPFKCAVDG-----CDWAFATEYKLK 217

Query: 111 RHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQY 170
           RH+ +H E KK + CD + C + FTT+ NL+ HM  HG+P+   C   GC + F T ++ 
Sbjct: 218 RHLETH-EGKKDFMCDVEGCGQHFTTVYNLRAHMKLHGRPM-FGCPSPGCSQVFGTRRKM 275

Query: 171 STHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVC--KGCGKQFKVPC 228
             HL+EH  + APY C  +GCGK++Y   +L SH RVH   PE+L C    CG+ F   C
Sbjct: 276 ELHLREHQELDAPYRCTEEGCGKAYYSSNTLASHLRVHQHRPEELCCPFPECGRAFGRAC 335

Query: 229 RLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSFLS 288
           +LR H +  H   + + C+   C   F++ S L RH + KH   R + CP   CGK+F+ 
Sbjct: 336 KLRLHLRQ-HTGERPYACS--SCSWTFASASKLTRHMR-KHTGDRRYVCPEPGCGKAFMR 391

Query: 289 TQ 290
            +
Sbjct: 392 PE 393

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149446795|ref|XP_001519008.1| PREDICTED: zinc finger X-linked protein ZXDB-like, partial [Ornithorhynchus anatinus]

 Score =  154 bits (388), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 98/273 (35%), Positives = 137/273 (50%), Gaps = 20/273 (7%)

Query: 28  ITEALQSLGINKEYFISSTGGKNSKKQQ-----LWSCPIVNCNFTSVNLNTFKIHLLKHF 82
           + E    LG  +E   S+ G +           ++ CP  NC  T    +  K+HLL H 
Sbjct: 264 LPEPGDPLGKAREVEGSTPGARKGGAGATGVVLVYHCPEPNCPQTFSKKHQLKLHLLSHS 323

Query: 83  D---KRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSN 139
               +RPFKC L       C W F + +KL RH+ SHD+ +  + C   +C KRFTT+ N
Sbjct: 324 STQGQRPFKCPLDG-----CGWSFTTSYKLKRHLQSHDKLRP-FTCPTGDCGKRFTTVYN 377

Query: 140 LKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMA 199
           LK HM  H +  T  CE   C  +F +  + STH + H     PY C++ GC K+F  ++
Sbjct: 378 LKAHMKGHEQENTFKCEV--CAERFPSHAKLSTHQRTHFEPERPYKCEFPGCEKTFITVS 435

Query: 200 SLKSHQRVHVTNPEDLVC--KGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFST 257
           +L SH R H    E   C   GC KQ+   CRL+ H ++ H   + F C +DGC   F++
Sbjct: 436 ALFSHNRAHFREQELFSCSFPGCDKQYDKACRLKIHLRS-HTGERPFICDFDGCGWSFTS 494

Query: 258 KSALKRHNKSKHLNMRMFPCPLVTCGKSFLSTQ 290
            S L RH K KH + R F C +  CGKSF   +
Sbjct: 495 MSKLLRH-KRKHEDDRRFTCTVEGCGKSFTRAE 526

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
RGD|1563355	583	Zxdb "zinc finger, X-linked, d	0.756	0.379	0.389	7.5e-41
RGD|1585677	583	LOC683516 "similar to Zinc fin	0.756	0.379	0.389	7.5e-41
RGD|1585685	583	LOC683508 "similar to Zinc fin	0.756	0.379	0.389	7.5e-41
MGI|MGI:3694898	873	Zxdb "zinc finger, X-linked, d	0.756	0.253	0.389	6.4e-40
UNIPROTKB|E2R2S7	779	ZXDB "Uncharacterized protein"	0.756	0.283	0.385	5.3e-39
UNIPROTKB|P98169	803	ZXDB "Zinc finger X-linked pro	0.756	0.275	0.385	7.6e-39
UNIPROTKB|F6XMD6	904	ZXDB "Uncharacterized protein"	0.756	0.244	0.385	8.5e-39
UNIPROTKB|F1MWD7	749	ZXDC "Uncharacterized protein"	0.753	0.293	0.378	1.2e-38
UNIPROTKB|G3MYH0	760	ZXDC "Uncharacterized protein"	0.753	0.289	0.378	1.3e-38
UNIPROTKB|G3X7S5	814	ZXDB "Uncharacterized protein"	0.756	0.271	0.385	1.7e-38

RGD|1563355 Zxdb "zinc finger, X-linked, duplicated B" [Rattus norvegicus (taxid:10116)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 92/236 (38%), Positives = 124/236 (52%)

Query:    56 LWSCPIVNCNFTSVNLNTFKIHLLKHFD---KRPFKCKLTTANNTPCMWGFFSKHKLLRH 112
             L+ CP   C  T    +  K+HLL H     +RPFKC L+      C W F + +KL RH
Sbjct:    46 LYLCPEAQCGQTFAKKHQLKVHLLTHSSSQGQRPFKCPLSG-----CGWTFTTSYKLKRH 100

Query:   113 MTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYST 172
             + SHD+ +  + C  + C K FTT+ NLK HM  H +  +  CE   C   F T  + ST
Sbjct:   101 LQSHDKLRP-FGCPVEGCGKSFTTVYNLKAHMKGHEQENSFKCEV--CEESFPTQAKLST 157

Query:   173 HLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRL 230
             H + H     PY C + GC K+F  +++L SH R H    E   C   GC KQ+   CRL
Sbjct:   158 HQRSHFEPERPYQCAFSGCKKTFITVSALFSHNRAHFREQELFACSFPGCSKQYDKACRL 217

Query:   231 REHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
             + H ++ H   + F C +DGC   F++ S L RH K KH + R F CP+  CGKSF
Sbjct:   218 KIHLRS-HTGERPFLCDFDGCGWNFTSMSKLLRH-KRKHEDDRRFTCPVEGCGKSF 271

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1585677 LOC683516 "similar to Zinc finger X-linked protein ZXDB" [Rattus norvegicus (taxid:10116)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 92/236 (38%), Positives = 124/236 (52%)

Query:    56 LWSCPIVNCNFTSVNLNTFKIHLLKHFD---KRPFKCKLTTANNTPCMWGFFSKHKLLRH 112
             L+ CP   C  T    +  K+HLL H     +RPFKC L+      C W F + +KL RH
Sbjct:    46 LYLCPEAQCGQTFAKKHQLKVHLLTHSSSQGQRPFKCPLSG-----CGWTFTTSYKLKRH 100

Query:   113 MTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYST 172
             + SHD+ +  + C  + C K FTT+ NLK HM  H +  +  CE   C   F T  + ST
Sbjct:   101 LQSHDKLRP-FGCPVEGCGKSFTTVYNLKAHMKGHEQENSFKCEV--CEESFPTQAKLST 157

Query:   173 HLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRL 230
             H + H     PY C + GC K+F  +++L SH R H    E   C   GC KQ+   CRL
Sbjct:   158 HQRSHFEPERPYQCAFSGCKKTFITVSALFSHNRAHFREQELFACSFPGCSKQYDKACRL 217

Query:   231 REHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
             + H ++ H   + F C +DGC   F++ S L RH K KH + R F CP+  CGKSF
Sbjct:   218 KIHLRS-HTGERPFLCDFDGCGWNFTSMSKLLRH-KRKHEDDRRFTCPVEGCGKSF 271

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1585685 LOC683508 "similar to Zinc finger X-linked protein ZXDB" [Rattus norvegicus (taxid:10116)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 92/236 (38%), Positives = 124/236 (52%)

Query:    56 LWSCPIVNCNFTSVNLNTFKIHLLKHFD---KRPFKCKLTTANNTPCMWGFFSKHKLLRH 112
             L+ CP   C  T    +  K+HLL H     +RPFKC L+      C W F + +KL RH
Sbjct:    46 LYLCPEAQCGQTFAKKHQLKVHLLTHSSSQGQRPFKCPLSG-----CGWTFTTSYKLKRH 100

Query:   113 MTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYST 172
             + SHD+ +  + C  + C K FTT+ NLK HM  H +  +  CE   C   F T  + ST
Sbjct:   101 LQSHDKLRP-FGCPVEGCGKSFTTVYNLKAHMKGHEQENSFKCEV--CEESFPTQAKLST 157

Query:   173 HLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRL 230
             H + H     PY C + GC K+F  +++L SH R H    E   C   GC KQ+   CRL
Sbjct:   158 HQRSHFEPERPYQCAFSGCKKTFITVSALFSHNRAHFREQELFACSFPGCSKQYDKACRL 217

Query:   231 REHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
             + H ++ H   + F C +DGC   F++ S L RH K KH + R F CP+  CGKSF
Sbjct:   218 KIHLRS-HTGERPFLCDFDGCGWNFTSMSKLLRH-KRKHEDDRRFTCPVEGCGKSF 271

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:3694898 Zxdb "zinc finger, X-linked, duplicated B" [Mus musculus (taxid:10090)]

 Score = 434 (157.8 bits), Expect = 6.4e-40, P = 6.4e-40
 Identities = 92/236 (38%), Positives = 124/236 (52%)

Query:    56 LWSCPIVNCNFTSVNLNTFKIHLLKHFD---KRPFKCKLTTANNTPCMWGFFSKHKLLRH 112
             L+ CP   C  T    +  K+HLL H     +RPFKC L+      C W F + +KL RH
Sbjct:   339 LYLCPEAQCGQTFAKKHQLKVHLLTHSSSQGQRPFKCPLSG-----CGWTFTTSYKLKRH 393

Query:   113 MTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYST 172
             + SHD+ +  + C  + C K FTT+ NLK HM  H +  +  CE   C   F T  + ST
Sbjct:   394 LQSHDKLRP-FGCPVQGCGKSFTTVYNLKAHMKGHEQENSFKCEV--CEESFPTQAKLST 450

Query:   173 HLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRL 230
             H + H     PY C + GC K+F  +++L SH R H    E   C   GC KQ+   CRL
Sbjct:   451 HQRSHFEPERPYQCAFSGCKKTFITVSALFSHNRAHFREQELFACSFPGCSKQYDKACRL 510

Query:   231 REHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
             + H ++ H   + F C +DGC   F++ S L RH K KH + R F CP+  CGKSF
Sbjct:   511 KIHLRS-HTGERPFLCDFDGCGWNFTSMSKLLRH-KRKHEDDRRFTCPVEGCGKSF 564

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E2R2S7 ZXDB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 424 (154.3 bits), Expect = 5.3e-39, P = 5.3e-39
 Identities = 91/236 (38%), Positives = 122/236 (51%)

Query:    56 LWSCPIVNCNFTSVNLNTFKIHLLKHFD---KRPFKCKLTTANNTPCMWGFFSKHKLLRH 112
             L+ CP   C  T    +  K+HLL H     +RPFKC L       C W F + +KL RH
Sbjct:   246 LYLCPEAQCGQTFAKKHQLKVHLLTHSSSQGQRPFKCPLGG-----CGWTFTTSYKLKRH 300

Query:   113 MTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYST 172
             + SHD+ +  + C  + C K FTT+ NLK HM  H +  +  CE   C   F T  + S 
Sbjct:   301 LQSHDKLRP-FGCPAEGCGKSFTTVYNLKAHMKGHEQENSFKCEV--CEESFPTQAKLSA 357

Query:   173 HLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRL 230
             H + H     PY C + GC K+F  +++L SH R H    E   C   GC KQ+   CRL
Sbjct:   358 HQRSHFEPERPYQCAFSGCKKTFITVSALFSHNRAHFREQELFSCSFPGCSKQYDKACRL 417

Query:   231 REHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
             + H ++ H   + F C +DGC   F++ S L RH K KH + R F CP+  CGKSF
Sbjct:   418 KIHLRS-HTGERPFLCDFDGCGWNFTSMSKLLRH-KRKHEDDRRFMCPVEGCGKSF 471

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|P98169 ZXDB "Zinc finger X-linked protein ZXDB" [Homo sapiens (taxid:9606)]

 Score = 423 (154.0 bits), Expect = 7.6e-39, P = 7.6e-39
 Identities = 91/236 (38%), Positives = 122/236 (51%)

Query:    56 LWSCPIVNCNFTSVNLNTFKIHLLKHFD---KRPFKCKLTTANNTPCMWGFFSKHKLLRH 112
             L+ CP   C  T    +  K+HLL H     +RPFKC L       C W F + +KL RH
Sbjct:   270 LYLCPEAQCGQTFAKKHQLKVHLLTHSSSQGQRPFKCPLGG-----CGWTFTTSYKLKRH 324

Query:   113 MTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYST 172
             + SHD+ +  + C  + C K FTT+ NLK HM  H +  +  CE   C   F T  + S 
Sbjct:   325 LQSHDKLRP-FGCPAEGCGKSFTTVYNLKAHMKGHEQENSFKCEV--CEESFPTQAKLSA 381

Query:   173 HLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRL 230
             H + H     PY C + GC K+F  +++L SH R H    E   C   GC KQ+   CRL
Sbjct:   382 HQRSHFEPERPYQCAFSGCKKTFITVSALFSHNRAHFREQELFSCSFPGCSKQYDKACRL 441

Query:   231 REHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
             + H ++ H   + F C +DGC   F++ S L RH K KH + R F CP+  CGKSF
Sbjct:   442 KIHLRS-HTGERPFLCDFDGCGWNFTSMSKLLRH-KRKHDDDRRFMCPVEGCGKSF 495

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=NAS

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F6XMD6 ZXDB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 424 (154.3 bits), Expect = 8.5e-39, P = 8.5e-39
 Identities = 91/236 (38%), Positives = 122/236 (51%)

Query:    56 LWSCPIVNCNFTSVNLNTFKIHLLKHFD---KRPFKCKLTTANNTPCMWGFFSKHKLLRH 112
             L+ CP   C  T    +  K+HLL H     +RPFKC L       C W F + +KL RH
Sbjct:   371 LYLCPEAQCGQTFAKKHQLKVHLLTHSSSQGQRPFKCPLGG-----CGWTFTTSYKLKRH 425

Query:   113 MTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYST 172
             + SHD+ +  + C  + C K FTT+ NLK HM  H +  +  CE   C   F T  + S 
Sbjct:   426 LQSHDKLRP-FGCPAEGCGKSFTTVYNLKAHMKGHEQENSFKCEV--CEESFPTQAKLSA 482

Query:   173 HLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRL 230
             H + H     PY C + GC K+F  +++L SH R H    E   C   GC KQ+   CRL
Sbjct:   483 HQRSHFEPERPYQCAFSGCKKTFITVSALFSHNRAHFREQELFSCSFPGCSKQYDKACRL 542

Query:   231 REHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
             + H ++ H   + F C +DGC   F++ S L RH K KH + R F CP+  CGKSF
Sbjct:   543 KIHLRS-HTGERPFLCDFDGCGWNFTSMSKLLRH-KRKHEDDRRFMCPVEGCGKSF 596

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1MWD7 ZXDC "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 420 (152.9 bits), Expect = 1.2e-38, P = 1.2e-38
 Identities = 89/235 (37%), Positives = 121/235 (51%)

Query:    57 WSCPIVNCNFTSVNLNTFKIHLLKHFD---KRPFKCKLTTANNTPCMWGFFSKHKLLRHM 113
             + CP   C       +  ++HLL H     +RPFKC L       C W F + +KL RH+
Sbjct:    96 YRCPEPQCALAFAKKHQLQVHLLTHGSGQGRRPFKCPLDG-----CGWAFTTSYKLKRHL 150

Query:   114 TSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTH 173
              SHD+ +  + C    C K+FTT+ NLK HM  H +     CE   C  +F T  + S+H
Sbjct:   151 QSHDKLRP-FGCPVGGCGKKFTTVYNLKAHMKAHEQESLFKCEV--CAERFPTHAKLSSH 207

Query:   174 LKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLR 231
              + H     PY CD+ GC K+F  +++L SH R H    E   C   GC KQ+   CRL+
Sbjct:   208 QRSHFEPERPYKCDFPGCEKTFITVSALFSHNRAHFREQELFSCSFPGCSKQYDKACRLK 267

Query:   232 EHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
              H ++ H   + F C  D C   F++ S L RH K KH + R FPCP+  CGKSF
Sbjct:   268 IHLRS-HTGERPFICDSDSCGWTFTSMSKLLRH-KRKHDDDRRFPCPVEGCGKSF 320

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|G3MYH0 ZXDC "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 420 (152.9 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 89/235 (37%), Positives = 121/235 (51%)

Query:    57 WSCPIVNCNFTSVNLNTFKIHLLKHFD---KRPFKCKLTTANNTPCMWGFFSKHKLLRHM 113
             + CP   C       +  ++HLL H     +RPFKC L       C W F + +KL RH+
Sbjct:    97 YRCPEPQCALAFAKKHQLQVHLLTHGSGQGRRPFKCPLDG-----CGWAFTTSYKLKRHL 151

Query:   114 TSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTH 173
              SHD+ +  + C    C K+FTT+ NLK HM  H +     CE   C  +F T  + S+H
Sbjct:   152 QSHDKLRP-FGCPVGGCGKKFTTVYNLKAHMKAHEQESLFKCEV--CAERFPTHAKLSSH 208

Query:   174 LKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLR 231
              + H     PY CD+ GC K+F  +++L SH R H    E   C   GC KQ+   CRL+
Sbjct:   209 QRSHFEPERPYKCDFPGCEKTFITVSALFSHNRAHFREQELFSCSFPGCSKQYDKACRLK 268

Query:   232 EHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
              H ++ H   + F C  D C   F++ S L RH K KH + R FPCP+  CGKSF
Sbjct:   269 IHLRS-HTGERPFICDSDSCGWTFTSMSKLLRH-KRKHDDDRRFPCPVEGCGKSF 321

GO:0070742 "C2H2 zinc finger domain binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0030275 "LRR domain binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|G3X7S5 ZXDB "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 420 (152.9 bits), Expect = 1.7e-38, P = 1.7e-38
 Identities = 91/236 (38%), Positives = 123/236 (52%)

Query:    56 LWSCPIVNCNFTSVNLNTFKIHLLKHFD---KRPFKCKLTTANNTPCMWGFFSKHKLLRH 112
             L+ CP V C  T    +  K+HLL H     +RPFKC L       C W F + +KL RH
Sbjct:   280 LYLCPEVQCGQTFAKKHQLKVHLLTHSSSQGQRPFKCPLGG-----CGWTFTTSYKLKRH 334

Query:   113 MTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYST 172
             + SHD+ +  + C  + C K FTT+ NLK HM  H +  +  CE   C   F T  + S 
Sbjct:   335 LQSHDKLRP-FGCPAEGCGKSFTTVYNLKAHMKGHEQENSFKCEV--CEDTFPTQAKLSA 391

Query:   173 HLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRL 230
             H + H     PY C + GC K+F  +++L SH R H    E   C   GC KQ+   CRL
Sbjct:   392 HQRSHFEPERPYQCAFSGCKKTFITVSALFSHNRAHFREQELFSCSFPGCSKQYDKACRL 451

Query:   231 REHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
             + H ++ H   + F C ++GC   F++ S L RH K KH + R F CP+  CGKSF
Sbjct:   452 KIHLRS-HTGERPFLCDFEGCGWNFTSMSKLLRH-KRKHDDDRRFMCPVEGCGKSF 505

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	292
KOG3608|consensus	467		99.96
KOG2462|consensus	279		99.96
KOG1074|consensus	958		99.95
KOG2462|consensus	279		99.95
KOG3608|consensus	467		99.94
KOG1074|consensus	958		99.9
KOG3623|consensus	1007		99.89
KOG3623|consensus	1007		99.84
KOG3576|consensus	267		99.7
KOG3576|consensus	267		99.59
PLN03086	567	PRLI-interacting factor K; Provisional	99.34
PHA00733	128	hypothetical protein	99.2
PLN03086	567	PRLI-interacting factor K; Provisional	99.13
PHA00733	128	hypothetical protein	99.07
PHA02768	55	hypothetical protein; Provisional	98.96
PHA02768	55	hypothetical protein; Provisional	98.93
KOG3993|consensus	500		98.83
KOG3993|consensus	500		98.7
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.65
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.59
PHA00616	44	hypothetical protein	98.43
PHA00732	79	hypothetical protein	98.28
PHA00616	44	hypothetical protein	98.27
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.23
PHA00732	79	hypothetical protein	98.07
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.96
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.91
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.79
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.66
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.58
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.52
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.51
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.5
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.29
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.25
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.11
KOG4173|consensus	253		96.81
smart00355	26	ZnF_C2H2 zinc finger.	96.72
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.63
COG5048	467	FOG: Zn-finger [General function prediction only]	96.46
smart00355	26	ZnF_C2H2 zinc finger.	96.36
COG5236	493	Uncharacterized conserved protein, contains RING Z	96.35
KOG2231|consensus	669		96.31
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.15
KOG2231|consensus	669		96.1
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.1
PRK04860	160	hypothetical protein; Provisional	96.02
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	95.96
COG5048	467	FOG: Zn-finger [General function prediction only]	95.79
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	95.76
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	95.69
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.61
KOG4173|consensus	253		95.56
KOG2482|consensus	423		95.5
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.26
PRK04860	160	hypothetical protein; Provisional	95.11
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.0
KOG1146|consensus	1406		94.97
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	93.62
KOG1146|consensus	1406		93.29
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	92.54
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	92.32
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	91.74
KOG2785|consensus	390		91.18
KOG2482|consensus	423		90.52
KOG4124|consensus	442		89.21
COG4049	65	Uncharacterized protein containing archaeal-type C	89.04
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	88.75
KOG2893|consensus	341		85.99
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	85.2
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	85.16
KOG4377|consensus	480		80.83
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	80.5

>KOG3608|consensus

Probab=99.96  E-value=9.9e-30  Score=205.75  Aligned_cols=221  Identities=25%  Similarity=0.491  Sum_probs=195.3

Q ss_pred             CCCCcccccCCCCcccccChHHHHhHHhhccC------------CCc-cccccCCCCcccccccccchHHHHHhHhhcCC
Q psy11068         52 KKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFD------------KRP-FKCKLTTANNTPCMWGFFSKHKLLRHMTSHDE  118 (292)
Q Consensus        52 ~~~~~~~C~~~~C~~~~~~~~~l~~H~~~h~~------------~~~-~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~  118 (292)
                      .....|.|.+-.|+..|.+...|..|+..|..            ++| +.|...+     |-+.|.++..|++|+++|.+
T Consensus       130 ~~g~~f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~-----Ct~~~~~k~~LreH~r~Hs~  204 (467)
T KOG3608|consen  130 ALGQNFRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAM-----CTKHMGNKYRLREHIRTHSN  204 (467)
T ss_pred             cchhhhccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchh-----hhhhhccHHHHHHHHHhcCC
Confidence            34557999999999999999999999987752            223 6777744     99999999999999999999


Q ss_pred             CCCCccCCCcccchhcCChHHHHHHHHhc--CCCCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccC
Q psy11068        119 DKKCYPCDQKNCNKRFTTLSNLKMHMVRH--GKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFY  196 (292)
Q Consensus       119 ~~~~~~c~c~~C~~~f~~~~~l~~H~~~h--~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~  196 (292)
                      + +...|+  .|+..|.++..|..|+++-  -...+|+|..  |.+.|.+...|..|+..|..   .|+|+.  |+.+..
T Consensus       205 e-KvvACp--~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~--C~KrFaTeklL~~Hv~rHvn---~ykCpl--Cdmtc~  274 (467)
T KOG3608|consen  205 E-KVVACP--HCGELFRTKTKLFDHLRRQTELNTNSFQCAQ--CFKRFATEKLLKSHVVRHVN---CYKCPL--CDMTCS  274 (467)
T ss_pred             C-eEEecc--hHHHHhccccHHHHHHHhhhhhcCCchHHHH--HHHHHhHHHHHHHHHHHhhh---cccccc--cccCCC
Confidence            9 666777  8999999999999998864  3457899999  99999999999999999964   499988  999999


Q ss_pred             CHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCC--CCc
Q psy11068        197 LMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLN--MRM  274 (292)
Q Consensus       197 ~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~--~~~  274 (292)
                      ..++|..|++.-|...+||+|..|++.|.+.+.|.+|.. +|+ +..|.|..+.|..+|.+...|++|++.+|.|  +.+
T Consensus       275 ~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~-~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~  352 (467)
T KOG3608|consen  275 SASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQ-VHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPIL  352 (467)
T ss_pred             ChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHH-hcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Confidence            999999999987788999999999999999999999999 898 6779998888999999999999999988865  456


Q ss_pred             CCCCCccCCcccccccC
Q psy11068        275 FPCPLVTCGKSFLSTQE  291 (292)
Q Consensus       275 ~~C~~~~C~~~f~~~~~  291 (292)
                      |.|..  |++.|.+-..
T Consensus       353 Y~CH~--Cdr~ft~G~~  367 (467)
T KOG3608|consen  353 YACHC--CDRFFTSGKS  367 (467)
T ss_pred             eeeec--chhhhccchh
Confidence            99998  9999976443

>KOG2462|consensus

Probab=99.96  E-value=4.8e-30  Score=202.43  Aligned_cols=127  Identities=33%  Similarity=0.671  Sum_probs=86.8

Q ss_pred             ccchhcCChHHHHHHHHhcCC---CCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHH
Q psy11068        129 NCNKRFTTLSNLKMHMVRHGK---PLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQ  205 (292)
Q Consensus       129 ~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~  205 (292)
                      .|++.+.+.++|.+|..+|..   .+.+.|..  |++.|.+...|..|+++|.   .+.+|.+  ||+.|...+.|+-|+
T Consensus       135 eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~--C~K~YvSmpALkMHirTH~---l~c~C~i--CGKaFSRPWLLQGHi  207 (279)
T KOG2462|consen  135 ECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKY--CGKVYVSMPALKMHIRTHT---LPCECGI--CGKAFSRPWLLQGHI  207 (279)
T ss_pred             ccccccccccccchhhcccccccccccccCCC--CCceeeehHHHhhHhhccC---CCccccc--ccccccchHHhhccc
Confidence            677777777777777776633   45566766  7777777777777777664   4466666  777777777777777


Q ss_pred             HHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhh
Q psy11068        206 RVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNK  266 (292)
Q Consensus       206 ~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~  266 (292)
                      ++| +|++||.|+.|+|+|..+++|+.||+ +|.+.++|+|..  |+|+|+..+.|.+|..
T Consensus       208 RTH-TGEKPF~C~hC~kAFADRSNLRAHmQ-THS~~K~~qC~~--C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  208 RTH-TGEKPFSCPHCGKAFADRSNLRAHMQ-THSDVKKHQCPR--CGKSFALKSYLNKHSE  264 (279)
T ss_pred             ccc-cCCCCccCCcccchhcchHHHHHHHH-hhcCCccccCcc--hhhHHHHHHHHHHhhh
Confidence            776 66677777777777777777777766 676666777755  7777777777766665

>KOG1074|consensus

Probab=99.95  E-value=5.2e-29  Score=221.40  Aligned_cols=79  Identities=28%  Similarity=0.523  Sum_probs=71.7

Q ss_pred             CcccchhcCChHHHHHHHHhcCCCCcccccccccchhccChHHHHHHHhhhcCC---CCceeCC---CCCCCcccCCHHH
Q psy11068        127 QKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCD---YKGCGKSFYLMAS  200 (292)
Q Consensus       127 c~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~---~~~~~C~---~~~C~~~f~~~~~  200 (292)
                      |-+|-+...-+++|+.|.++|+++++|+|.+  ||++|.++.+|+.|+-.|...   .-++.|+   +  |-+.|.+.-.
T Consensus       608 CiiC~rVlSC~saLqmHyrtHtGERPFkCKi--CgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~i--c~~kftn~V~  683 (958)
T KOG1074|consen  608 CIICLRVLSCPSALQMHYRTHTGERPFKCKI--CGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFI--CQKKFTNAVT  683 (958)
T ss_pred             eeeeeecccchhhhhhhhhcccCcCcccccc--ccchhccccchhhcccccccCccccccccCCchhh--hccccccccc
Confidence            8899999999999999999999999999999  999999999999999988641   2457887   7  9999999999


Q ss_pred             HHHHHHHhc
Q psy11068        201 LKSHQRVHV  209 (292)
Q Consensus       201 l~~H~~~h~  209 (292)
                      |..|+++|.
T Consensus       684 lpQhIriH~  692 (958)
T KOG1074|consen  684 LPQHIRIHL  692 (958)
T ss_pred             ccceEEeec
Confidence            999999985

>KOG2462|consensus

Probab=99.95  E-value=1.5e-28  Score=193.95  Aligned_cols=137  Identities=28%  Similarity=0.578  Sum_probs=124.2

Q ss_pred             CCccccccCCCCcccccccccchHHHHHhHhhcCCCCCCccCCCcccchhcCChHHHHHHHHhcCCCCcccccccccchh
Q psy11068         84 KRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRK  163 (292)
Q Consensus        84 ~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~c~c~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~  163 (292)
                      ...|+|..       |++.+.+.++|.+|.++|......-...|+.|+|.|.+..+|..|+++|+  .++.|.+  ||+.
T Consensus       128 ~~r~~c~e-------Cgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~i--CGKa  196 (279)
T KOG2462|consen  128 HPRYKCPE-------CGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGI--CGKA  196 (279)
T ss_pred             CCceeccc-------cccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCccccc--cccc
Confidence            35589998       99999999999999999976433334444499999999999999999997  6889999  9999


Q ss_pred             ccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHH
Q psy11068        164 FQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYK  235 (292)
Q Consensus       164 f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~  235 (292)
                      |.....|+-|+++|+| +|||.|..  |++.|..+++|+.||++| .+.+.|+|..|+|+|...+.|.+|..
T Consensus       197 FSRPWLLQGHiRTHTG-EKPF~C~h--C~kAFADRSNLRAHmQTH-S~~K~~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  197 FSRPWLLQGHIRTHTG-EKPFSCPH--CGKAFADRSNLRAHMQTH-SDVKKHQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             ccchHHhhcccccccC-CCCccCCc--ccchhcchHHHHHHHHhh-cCCccccCcchhhHHHHHHHHHHhhh
Confidence            9999999999999998 99999988  999999999999999999 77789999999999999999999976

>KOG3608|consensus

Probab=99.94  E-value=4.1e-27  Score=190.63  Aligned_cols=212  Identities=25%  Similarity=0.473  Sum_probs=187.4

Q ss_pred             CcccccCCCCcccccChHHHHhHHhhccCCCccccccCCCCcccccccccchHHHHHhHhhcCCC-CCCccCCCcccchh
Q psy11068         55 QLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDED-KKCYPCDQKNCNKR  133 (292)
Q Consensus        55 ~~~~C~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~-~~~~~c~c~~C~~~  133 (292)
                      -.+.|.+..|-+.+.++..|++|++.|++++...|+.       ||.-|.++..|..|++..+.. +.+|.|.  .|.|.
T Consensus       176 pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~-------Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~--~C~Kr  246 (467)
T KOG3608|consen  176 PVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPH-------CGELFRTKTKLFDHLRRQTELNTNSFQCA--QCFKR  246 (467)
T ss_pred             ceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecch-------HHHHhccccHHHHHHHhhhhhcCCchHHH--HHHHH
Confidence            3588999999999999999999999999999999998       999999999999999877653 2567777  89999


Q ss_pred             cCChHHHHHHHHhcCCCCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCC
Q psy11068        134 FTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPE  213 (292)
Q Consensus       134 f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~  213 (292)
                      |.+...|..|+..|.  ..|+|+.  |+.+....++|..|++.-+...+||+|+.  |++.|.+.+.|++|..+| . +.
T Consensus       247 FaTeklL~~Hv~rHv--n~ykCpl--Cdmtc~~~ssL~~H~r~rHs~dkpfKCd~--Cd~~c~~esdL~kH~~~H-S-~~  318 (467)
T KOG3608|consen  247 FATEKLLKSHVVRHV--NCYKCPL--CDMTCSSASSLTTHIRYRHSKDKPFKCDE--CDTRCVRESDLAKHVQVH-S-KT  318 (467)
T ss_pred             HhHHHHHHHHHHHhh--hcccccc--cccCCCChHHHHHHHHhhhccCCCccccc--hhhhhccHHHHHHHHHhc-c-cc
Confidence            999999999999995  5799999  99999999999999987555599999998  999999999999999998 4 57


Q ss_pred             CcccCC--CcccccChhHHHHHHHHhcCCC--CcccCCcCCccccccCHHHHHhHhhhhcC-----CCCcCCCCCccCCc
Q psy11068        214 DLVCKG--CGKQFKVPCRLREHYKAVHEST--KNFKCTYDGCKLLFSTKSALKRHNKSKHL-----NMRMFPCPLVTCGK  284 (292)
Q Consensus       214 ~~~C~~--C~~~f~~~~~L~~H~~~~H~~~--~~~~C~~~~C~~~f~~~~~l~~H~~~~H~-----~~~~~~C~~~~C~~  284 (292)
                      .|+|..  |..+|++...|++|++.+|.|.  -+|+|-.  |++.|.+-.+|.+|+...|.     |-+.|...+  |..
T Consensus       319 ~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~--Cdr~ft~G~~L~~HL~kkH~f~~PsGh~RFtYk~--~ed  394 (467)
T KOG3608|consen  319 VYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHC--CDRFFTSGKSLSAHLMKKHGFRLPSGHKRFTYKV--DED  394 (467)
T ss_pred             ceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeec--chhhhccchhHHHHHHHhhcccCCCCCCceeeee--ccC
Confidence            899988  9999999999999999888654  4699988  99999999999999988884     444455555  665


Q ss_pred             ccc
Q psy11068        285 SFL  287 (292)
Q Consensus       285 ~f~  287 (292)
                      .|.
T Consensus       395 G~m  397 (467)
T KOG3608|consen  395 GFM  397 (467)
T ss_pred             cee
Confidence            554

>KOG1074|consensus

Probab=99.90  E-value=5.8e-25  Score=195.84  Aligned_cols=82  Identities=27%  Similarity=0.570  Sum_probs=74.2

Q ss_pred             cccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcC---CCCCcccC---CCccccc
Q psy11068        152 TLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVT---NPEDLVCK---GCGKQFK  225 (292)
Q Consensus       152 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~~~~~C~---~C~~~f~  225 (292)
                      +-+|.+  |-+...-++.|+.|.++|+| ++||+|.+  ||+.|.++.+|+.|+.+|..   ...++.|+   +|-+.|.
T Consensus       605 PNqCii--C~rVlSC~saLqmHyrtHtG-ERPFkCKi--CgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kft  679 (958)
T KOG1074|consen  605 PNQCII--CLRVLSCPSALQMHYRTHTG-ERPFKCKI--CGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFT  679 (958)
T ss_pred             ccceee--eeecccchhhhhhhhhcccC-cCcccccc--ccchhccccchhhcccccccCccccccccCCchhhhccccc
Confidence            468999  99999999999999999998 99999999  99999999999999999832   23568899   9999999


Q ss_pred             ChhHHHHHHHHhcC
Q psy11068        226 VPCRLREHYKAVHE  239 (292)
Q Consensus       226 ~~~~L~~H~~~~H~  239 (292)
                      ..-.|..|++ +|.
T Consensus       680 n~V~lpQhIr-iH~  692 (958)
T KOG1074|consen  680 NAVTLPQHIR-IHL  692 (958)
T ss_pred             ccccccceEE-eec
Confidence            9999999998 885

>KOG3623|consensus

Probab=99.89  E-value=1.1e-23  Score=184.92  Aligned_cols=109  Identities=29%  Similarity=0.632  Sum_probs=94.3

Q ss_pred             CcccccCCCCcccccChHHHHhHHhhcc--CCCccccccCCCCcccccccccchHHHHHhHhhcCCCC------------
Q psy11068         55 QLWSCPIVNCNFTSVNLNTFKIHLLKHF--DKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDK------------  120 (292)
Q Consensus        55 ~~~~C~~~~C~~~~~~~~~l~~H~~~h~--~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~~------------  120 (292)
                      ..+.|++  |...+.....|+.|++--+  .+..|.|..       |.++|..+..|.+||.+|....            
T Consensus       209 qlltcpy--cdrgykrltslkeHikyrhekne~nfsC~l-------CsytFAyRtQLErhm~~hkpg~dqa~sltqsa~l  279 (1007)
T KOG3623|consen  209 QLLTCPY--CDRGYKRLTSLKEHIKYRHEKNEPNFSCML-------CSYTFAYRTQLERHMQLHKPGGDQAISLTQSALL  279 (1007)
T ss_pred             hhhcchh--HHHHHHHHHHHHHHHHHHHhhCCCCCcchh-------hhhhhhhHHHHHHHHHhhcCCCcccccccchhhh
Confidence            4589996  9999999999999987433  345699999       9999999999999999985431            


Q ss_pred             CCccCCCcccchhcCChHHHHHHHHhcCCCCcccccccccchhccChHHHHHHHhh
Q psy11068        121 KCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKE  176 (292)
Q Consensus       121 ~~~~c~c~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~  176 (292)
                      +-|+|.  .|+|.|..+-.|+.|+|+|.|+++|.|..  |++.|....++..||..
T Consensus       280 RKFKCt--ECgKAFKfKHHLKEHlRIHSGEKPfeCpn--CkKRFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  280 RKFKCT--ECGKAFKFKHHLKEHLRIHSGEKPFECPN--CKKRFSHSGSYSSHMSS  331 (1007)
T ss_pred             cccccc--ccchhhhhHHHHHhhheeecCCCCcCCcc--cccccccCCcccccccc
Confidence            236666  99999999999999999999999999999  99999999999999754

>KOG3623|consensus

Probab=99.84  E-value=2e-21  Score=170.96  Aligned_cols=72  Identities=28%  Similarity=0.575  Sum_probs=67.6

Q ss_pred             CcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCCccCCcccccccC
Q psy11068        214 DLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSFLSTQE  291 (292)
Q Consensus       214 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~  291 (292)
                      +|.|++|+|+|...++|.+|.- -|+|.|||+|.+  |.|+|..+..|..|+| .|.|||||.|+.  |+|+|+-+++
T Consensus       894 myaCDqCDK~FqKqSSLaRHKY-EHsGqRPyqC~i--CkKAFKHKHHLtEHkR-LHSGEKPfQCdK--ClKRFSHSGS  965 (1007)
T KOG3623|consen  894 MYACDQCDKAFQKQSSLARHKY-EHSGQRPYQCII--CKKAFKHKHHLTEHKR-LHSGEKPFQCDK--CLKRFSHSGS  965 (1007)
T ss_pred             cchHHHHHHHHHhhHHHHHhhh-hhcCCCCcccch--hhHhhhhhhhhhhhhh-hccCCCcchhhh--hhhhcccccc
Confidence            3999999999999999999977 899999999987  9999999999999999 899999999999  9999987654

>KOG3576|consensus

Probab=99.70  E-value=5.3e-18  Score=127.90  Aligned_cols=113  Identities=33%  Similarity=0.596  Sum_probs=89.1

Q ss_pred             CCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhH
Q psy11068        150 PLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCR  229 (292)
Q Consensus       150 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~  229 (292)
                      ...|.|.+  |++.|..+.-|.+|++-|.. .+.|.|..  ||+.|...-.|++|+++| +|-+||+|..|+++|+.+.+
T Consensus       115 ~d~ftCrv--CgK~F~lQRmlnrh~kch~~-vkr~lct~--cgkgfndtfdlkrh~rth-tgvrpykc~~c~kaftqrcs  188 (267)
T KOG3576|consen  115 QDSFTCRV--CGKKFGLQRMLNRHLKCHSD-VKRHLCTF--CGKGFNDTFDLKRHTRTH-TGVRPYKCSLCEKAFTQRCS  188 (267)
T ss_pred             CCeeeeeh--hhhhhhHHHHHHHHhhhccH-HHHHHHhh--ccCcccchhhhhhhhccc-cCccccchhhhhHHHHhhcc
Confidence            45677888  88888888888888888876 67788877  888888888888888888 67788888888888888888


Q ss_pred             HHHHHHHhcCC----------CCcccCCcCCccccccCHHHHHhHhhhhcC
Q psy11068        230 LREHYKAVHES----------TKNFKCTYDGCKLLFSTKSALKRHNKSKHL  270 (292)
Q Consensus       230 L~~H~~~~H~~----------~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~  270 (292)
                      |..|++.+|..          .+.|.|.  +||.+-.....+..|++.+|.
T Consensus       189 leshl~kvhgv~~~yaykerr~kl~vce--dcg~t~~~~e~~~~h~~~~hp  237 (267)
T KOG3576|consen  189 LESHLKKVHGVQHQYAYKERRAKLYVCE--DCGYTSERPEVYYLHLKLHHP  237 (267)
T ss_pred             HHHHHHHHcCchHHHHHHHhhhheeeec--ccCCCCCChhHHHHHHHhcCC
Confidence            88888878852          4568884  488888888888888885553

>KOG3576|consensus

Probab=99.59  E-value=1.1e-15  Score=115.49  Aligned_cols=123  Identities=26%  Similarity=0.461  Sum_probs=68.8

Q ss_pred             CCcccccCCCCcccccChHHHHhHHhhccCCCccccccCCCCcccccccccchHHHHHhHhhcCCCCCCccCCCcccchh
Q psy11068         54 QQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKR  133 (292)
Q Consensus        54 ~~~~~C~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~c~c~~C~~~  133 (292)
                      ...|.|.+  |++.|.-...|.+|++-|.+.+.|-|..       ||+.|.....|++|+++|+|. +||+|.  .|++.
T Consensus       115 ~d~ftCrv--CgK~F~lQRmlnrh~kch~~vkr~lct~-------cgkgfndtfdlkrh~rthtgv-rpykc~--~c~ka  182 (267)
T KOG3576|consen  115 QDSFTCRV--CGKKFGLQRMLNRHLKCHSDVKRHLCTF-------CGKGFNDTFDLKRHTRTHTGV-RPYKCS--LCEKA  182 (267)
T ss_pred             CCeeeeeh--hhhhhhHHHHHHHHhhhccHHHHHHHhh-------ccCcccchhhhhhhhccccCc-cccchh--hhhHH
Confidence            33455554  5555555555555555555555555555       555555555555555555555 455555  55555


Q ss_pred             cCChHHHHHHHHh-cCCCCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCC
Q psy11068        134 FTTLSNLKMHMVR-HGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTN  211 (292)
Q Consensus       134 f~~~~~l~~H~~~-h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~  211 (292)
                      |..+..|..|++. |.....|.-..                    . ..+-|.|+.  ||.+-.....+..|++.||..
T Consensus       183 ftqrcsleshl~kvhgv~~~yayke--------------------r-r~kl~vced--cg~t~~~~e~~~~h~~~~hp~  238 (267)
T KOG3576|consen  183 FTQRCSLESHLKKVHGVQHQYAYKE--------------------R-RAKLYVCED--CGYTSERPEVYYLHLKLHHPF  238 (267)
T ss_pred             HHhhccHHHHHHHHcCchHHHHHHH--------------------h-hhheeeecc--cCCCCCChhHHHHHHHhcCCC
Confidence            5555555555443 22211111110                    0 145678865  888877777788888777543

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.34  E-value=3.6e-12  Score=113.53  Aligned_cols=135  Identities=21%  Similarity=0.495  Sum_probs=103.7

Q ss_pred             CcccchhcCChHHHHHHHHhcCCCCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHH
Q psy11068        127 QKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQR  206 (292)
Q Consensus       127 c~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~  206 (292)
                      |+.|..... ...|..|..... ...-.|+..+|+..|... .+          +..+.|+.  |++.|. ...|..|+.
T Consensus       410 C~NC~~~i~-l~~l~lHe~~C~-r~~V~Cp~~~Cg~v~~r~-el----------~~H~~C~~--Cgk~f~-~s~LekH~~  473 (567)
T PLN03086        410 CRNCKHYIP-SRSIALHEAYCS-RHNVVCPHDGCGIVLRVE-EA----------KNHVHCEK--CGQAFQ-QGEMEKHMK  473 (567)
T ss_pred             CCCCCCccc-hhHHHHHHhhCC-CcceeCCcccccceeecc-cc----------ccCccCCC--CCCccc-hHHHHHHHH
Confidence            347877655 445678875543 344568744599988432 21          55679988  999996 678999999


Q ss_pred             HhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCcccccc----------CHHHHHhHhhhhcCCCCcCC
Q psy11068        207 VHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFS----------TKSALKRHNKSKHLNMRMFP  276 (292)
Q Consensus       207 ~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~----------~~~~l~~H~~~~H~~~~~~~  276 (292)
                      ++|   .++.|+ |++.+ .+..|..|+. .|.+.+++.|++  |++.|.          ....|..|.. .+ +.+++.
T Consensus       474 ~~H---kpv~Cp-Cg~~~-~R~~L~~H~~-thCp~Kpi~C~f--C~~~v~~g~~~~d~~d~~s~Lt~HE~-~C-G~rt~~  543 (567)
T PLN03086        474 VFH---EPLQCP-CGVVL-EKEQMVQHQA-STCPLRLITCRF--CGDMVQAGGSAMDVRDRLRGMSEHES-IC-GSRTAP  543 (567)
T ss_pred             hcC---CCccCC-CCCCc-chhHHHhhhh-ccCCCCceeCCC--CCCccccCccccchhhhhhhHHHHHH-hc-CCcceE
Confidence            985   689999 99755 6789999987 899999999988  999985          2458999998 44 899999


Q ss_pred             CCCccCCcccccc
Q psy11068        277 CPLVTCGKSFLST  289 (292)
Q Consensus       277 C~~~~C~~~f~~~  289 (292)
                      |..  ||+.|..+
T Consensus       544 C~~--Cgk~Vrlr  554 (567)
T PLN03086        544 CDS--CGRSVMLK  554 (567)
T ss_pred             ccc--cCCeeeeh
Confidence            998  99998765

>PHA00733 hypothetical protein

Probab=99.20  E-value=2.1e-11  Score=89.04  Aligned_cols=82  Identities=17%  Similarity=0.230  Sum_probs=61.0

Q ss_pred             CCceeCCCCCCCcccCCHHHHHHH--HHH--hcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCcccccc
Q psy11068        181 SAPYMCDYKGCGKSFYLMASLKSH--QRV--HVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFS  256 (292)
Q Consensus       181 ~~~~~C~~~~C~~~f~~~~~l~~H--~~~--h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~  256 (292)
                      .+++.|.+  |...|.....|..+  +..  .+.+.+||.|+.|++.|.....|..|++ .|  ..+|.|..  |++.|.
T Consensus        38 ~~~~~~~~--~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r-~h--~~~~~C~~--CgK~F~  110 (128)
T PHA00733         38 QKRLIRAV--VKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIR-YT--EHSKVCPV--CGKEFR  110 (128)
T ss_pred             hhhHHHHH--HhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHh-cC--CcCccCCC--CCCccC
Confidence            56678877  88777776666665  211  1234678888888888888888888877 55  45688877  888888


Q ss_pred             CHHHHHhHhhhhc
Q psy11068        257 TKSALKRHNKSKH  269 (292)
Q Consensus       257 ~~~~l~~H~~~~H  269 (292)
                      ....|.+|+...|
T Consensus       111 ~~~sL~~H~~~~h  123 (128)
T PHA00733        111 NTDSTLDHVCKKH  123 (128)
T ss_pred             CHHHHHHHHHHhc
Confidence            8888888888655

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.13  E-value=1.5e-10  Score=103.29  Aligned_cols=148  Identities=21%  Similarity=0.447  Sum_probs=107.4

Q ss_pred             cccccCCCCcccccccccchHHHHHhHhhcCCCCCCccCCCcccchhcCChHHHHHHHHhcCCCCcccccccccchhccC
Q psy11068         87 FKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQT  166 (292)
Q Consensus        87 ~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~c~c~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~  166 (292)
                      ..|+.       |.+.. ...+|..|.....-.  ...|+-..|+..|. +..|..|         +.|..  |++.|. 
T Consensus       408 V~C~N-------C~~~i-~l~~l~lHe~~C~r~--~V~Cp~~~Cg~v~~-r~el~~H---------~~C~~--Cgk~f~-  464 (567)
T PLN03086        408 VECRN-------CKHYI-PSRSIALHEAYCSRH--NVVCPHDGCGIVLR-VEEAKNH---------VHCEK--CGQAFQ-  464 (567)
T ss_pred             EECCC-------CCCcc-chhHHHHHHhhCCCc--ceeCCcccccceee-ccccccC---------ccCCC--CCCccc-
Confidence            35766       87764 445566887655433  24565224888884 3333333         47999  999995 


Q ss_pred             hHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCccccc----------ChhHHHHHHHH
Q psy11068        167 MKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFK----------VPCRLREHYKA  236 (292)
Q Consensus       167 ~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~----------~~~~L~~H~~~  236 (292)
                      ...|..|+..++   .++.|+   ||+.+ .+..|..|+.+| -..+++.|..|++.|.          ..+.|..|.. 
T Consensus       465 ~s~LekH~~~~H---kpv~Cp---Cg~~~-~R~~L~~H~~th-Cp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~-  535 (567)
T PLN03086        465 QGEMEKHMKVFH---EPLQCP---CGVVL-EKEQMVQHQAST-CPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHES-  535 (567)
T ss_pred             hHHHHHHHHhcC---CCccCC---CCCCc-chhHHHhhhhcc-CCCCceeCCCCCCccccCccccchhhhhhhHHHHHH-
Confidence            678999999875   579995   99755 668999999888 6678999999999885          2357999987 


Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHL  270 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~  270 (292)
                      ++ +.+++.|..  ||+.|..+ .|..|+...|.
T Consensus       536 ~C-G~rt~~C~~--Cgk~Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        536 IC-GSRTAPCDS--CGRSVMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             hc-CCcceEccc--cCCeeeeh-hHHHHHHHhhc
Confidence            44 889999976  99888665 47888876664

>PHA00733 hypothetical protein

Probab=99.07  E-value=2.9e-10  Score=83.06  Aligned_cols=81  Identities=25%  Similarity=0.358  Sum_probs=61.8

Q ss_pred             CCcccccccccchhccChHHHHHH--Hh---hhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccc
Q psy11068        150 PLTLCCEELGCGRKFQTMKQYSTH--LK---EHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQF  224 (292)
Q Consensus       150 ~~~~~C~~~~C~~~f~~~~~l~~H--~~---~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f  224 (292)
                      .+.+.|.+  |.+.|.....|..+  +.   .+.+ .+||.|..  |++.|.+...|..|++.+ .  .+|.|..|+++|
T Consensus        38 ~~~~~~~~--~~~~~~~~~~l~~~~~l~~~~~~~~-~kPy~C~~--Cgk~Fss~s~L~~H~r~h-~--~~~~C~~CgK~F  109 (128)
T PHA00733         38 QKRLIRAV--VKTLIYNPQLLDESSYLYKLLTSKA-VSPYVCPL--CLMPFSSSVSLKQHIRYT-E--HSKVCPVCGKEF  109 (128)
T ss_pred             hhhHHHHH--HhhhccChhhhcchHHHHhhcccCC-CCCccCCC--CCCcCCCHHHHHHHHhcC-C--cCccCCCCCCcc
Confidence            45677777  77777766666555  21   1222 67899987  999999999999998876 2  468999999999


Q ss_pred             cChhHHHHHHHHhc
Q psy11068        225 KVPCRLREHYKAVH  238 (292)
Q Consensus       225 ~~~~~L~~H~~~~H  238 (292)
                      .....|..|+...|
T Consensus       110 ~~~~sL~~H~~~~h  123 (128)
T PHA00733        110 RNTDSTLDHVCKKH  123 (128)
T ss_pred             CCHHHHHHHHHHhc
Confidence            99999999988666

>PHA02768 hypothetical protein; Provisional

Probab=98.96  E-value=5e-10  Score=67.35  Aligned_cols=40  Identities=20%  Similarity=0.468  Sum_probs=20.5

Q ss_pred             ccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCCccCCccccccc
Q psy11068        244 FKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSFLSTQ  290 (292)
Q Consensus       244 ~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~  290 (292)
                      |+|+.  ||+.|++.++|..|++ .|+  +||+|..  |+|.|...+
T Consensus         6 y~C~~--CGK~Fs~~~~L~~H~r-~H~--k~~kc~~--C~k~f~~~s   45 (55)
T PHA02768          6 YECPI--CGEIYIKRKSMITHLR-KHN--TNLKLSN--CKRISLRTG   45 (55)
T ss_pred             cCcch--hCCeeccHHHHHHHHH-hcC--CcccCCc--ccceecccc
Confidence            45544  5555555555555555 344  3555544  555555443

>PHA02768 hypothetical protein; Provisional

Probab=98.93  E-value=4.2e-10  Score=67.70  Aligned_cols=43  Identities=21%  Similarity=0.387  Sum_probs=29.4

Q ss_pred             cccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHH
Q psy11068        215 LVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALK  262 (292)
Q Consensus       215 ~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~  262 (292)
                      |.|+.||+.|...++|..|++ +|.  ++|+|..  |++.|.+.+.|.
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r-~H~--k~~kc~~--C~k~f~~~s~l~   48 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLR-KHN--TNLKLSN--CKRISLRTGEYI   48 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHH-hcC--CcccCCc--ccceecccceeE
Confidence            667777777777777777777 565  5677755  777776665543

>KOG3993|consensus

Probab=98.83  E-value=3.9e-10  Score=94.75  Aligned_cols=203  Identities=15%  Similarity=0.168  Sum_probs=120.6

Q ss_pred             CCCcccccCCCCcccccChHHHHhHHhhccCCCccccccCCCCcccccccccchHHHHHhHhhcCCCCCCccCCCcccch
Q psy11068         53 KQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNK  132 (292)
Q Consensus        53 ~~~~~~C~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~c~c~~C~~  132 (292)
                      ....|.|.+  |...|.+.-.|..|.=.-.---.|+|+.       |+|.|.-..+|..|.|.|........-.-+-=.+
T Consensus       264 ~iGdyiCqL--CK~kYeD~F~LAQHrC~RIV~vEYrCPE-------C~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~  334 (500)
T KOG3993|consen  264 VIGDYICQL--CKEKYEDAFALAQHRCPRIVHVEYRCPE-------CDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQ  334 (500)
T ss_pred             cHHHHHHHH--HHHhhhhHHHHhhccCCeeEEeeecCCc-------ccccccCchhhhhhhcccCCchhhhhcCCCChhh
Confidence            344699997  9999999999998852221124599998       9999999999999999986543211100000000


Q ss_pred             hcCChHHHHHHHHh---cCCCCcccccccccchhccChHHHHHHHhhhcCCCCc----------------eeCCCCCCCc
Q psy11068        133 RFTTLSNLKMHMVR---HGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAP----------------YMCDYKGCGK  193 (292)
Q Consensus       133 ~f~~~~~l~~H~~~---h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~----------------~~C~~~~C~~  193 (292)
                      .-.. ..+.+-...   -.....|.|..  |++.|..+..|+.|+.+|......                +-+..  |+-
T Consensus       335 ~~~~-rae~~ea~rsg~dss~gi~~C~~--C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~--~a~  409 (500)
T KOG3993|consen  335 AVET-RAEVQEAERSGDDSSSGIFSCHT--CGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQA--VAT  409 (500)
T ss_pred             hhhh-hhhhhhccccCCcccCceeecHH--hhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccc--ccc
Confidence            1111 111111110   12234688988  999999999999998877642211                11111  222


Q ss_pred             ccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        194 SFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       194 ~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      .+.....--.+...+........|+.|+-.+.++..--.+.+ .-..+..|.|.+  |.-.|.....|.+|+..-|..+
T Consensus       410 h~~a~~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~r-lg~~~q~f~~ky--~~atfyss~~ltrhin~~Hpse  485 (500)
T KOG3993|consen  410 HSSASDSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGR-LGIAEQGFTCKY--CPATFYSSPGLTRHINKCHPSE  485 (500)
T ss_pred             ccccccccccceeeeeccccccCCCCCCCCcccCCCCCcccc-ccchhhcccccc--chHhhhcCcchHhHhhhcChHH
Confidence            222211111111112122233457888877777665555544 334566799988  9999999999999999878665

>KOG3993|consensus

Probab=98.70  E-value=1.2e-09  Score=91.93  Aligned_cols=172  Identities=16%  Similarity=0.224  Sum_probs=89.3

Q ss_pred             cccccCCCCcccccChHHHHhHHhhccCCCccccccCCCCcccccccccchHHHHHhHhhcC-CCCCCccCCCcccchhc
Q psy11068         56 LWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHD-EDKKCYPCDQKNCNKRF  134 (292)
Q Consensus        56 ~~~C~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~-~~~~~~~c~c~~C~~~f  134 (292)
                      .|+|+  +|+++|+-..+|..|.+=|... +-.=. .+.+-  =.+...+....+.=.+.-. .....|.|.  .|+++|
T Consensus       295 EYrCP--EC~KVFsCPANLASHRRWHKPR-~eaa~-a~~~P--~k~~~~~rae~~ea~rsg~dss~gi~~C~--~C~KkF  366 (500)
T KOG3993|consen  295 EYRCP--ECDKVFSCPANLASHRRWHKPR-PEAAK-AGSPP--PKQAVETRAEVQEAERSGDDSSSGIFSCH--TCGKKF  366 (500)
T ss_pred             eecCC--cccccccCchhhhhhhcccCCc-hhhhh-cCCCC--hhhhhhhhhhhhhccccCCcccCceeecH--Hhhhhh
Confidence            59999  6999999999999999887431 10000 00000  0000011111111111000 111235555  677777


Q ss_pred             CChHHHHHHHHhcCCCC-----------------cccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCC
Q psy11068        135 TTLSNLKMHMVRHGKPL-----------------TLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYL  197 (292)
Q Consensus       135 ~~~~~l~~H~~~h~~~~-----------------~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~  197 (292)
                      .....|+.|+.+|....                 .+-+..  |+..+.....--.+...+.+....-.|.+  |+..+.+
T Consensus       367 rRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~--~a~h~~a~~~~g~~vl~~a~sael~~pp~--~~~ppss  442 (500)
T KOG3993|consen  367 RRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQA--VATHSSASDSHGDEVLYVAGSAELELPPY--DGSPPSS  442 (500)
T ss_pred             HHHHHHHHhHHhhhccccchhcccCcchhhcccccccccc--cccccccccccccceeeeeccccccCCCC--CCCCccc
Confidence            77777777766553321                 122333  44444433333333333333233345666  7766666


Q ss_pred             HHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCC
Q psy11068        198 MASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHES  240 (292)
Q Consensus       198 ~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~  240 (292)
                      +..--.+.+.- .-...|.|.+|.-+|-+...|.+|+..-|..
T Consensus       443 s~~sgg~~rlg-~~~q~f~~ky~~atfyss~~ltrhin~~Hps  484 (500)
T KOG3993|consen  443 SGSSGGYGRLG-IAEQGFTCKYCPATFYSSPGLTRHINKCHPS  484 (500)
T ss_pred             CCCCCcccccc-chhhccccccchHhhhcCcchHhHhhhcChH
Confidence            55444444333 1234588889999999888999988766643

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.65  E-value=1e-08  Score=52.75  Aligned_cols=24  Identities=46%  Similarity=1.018  Sum_probs=12.8

Q ss_pred             HHhHhhhhcCCCCcCCCCCccCCcccc
Q psy11068        261 LKRHNKSKHLNMRMFPCPLVTCGKSFL  287 (292)
Q Consensus       261 l~~H~~~~H~~~~~~~C~~~~C~~~f~  287 (292)
                      |.+|++ .|++++||.|+.  |+++|.
T Consensus         2 l~~H~~-~H~~~k~~~C~~--C~k~F~   25 (26)
T PF13465_consen    2 LRRHMR-THTGEKPYKCPY--CGKSFS   25 (26)
T ss_dssp             HHHHHH-HHSSSSSEEESS--SSEEES
T ss_pred             HHHHhh-hcCCCCCCCCCC--CcCeeC
Confidence            455555 455555555554  555554

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.59  E-value=3.4e-08  Score=50.77  Aligned_cols=25  Identities=44%  Similarity=0.926  Sum_probs=17.1

Q ss_pred             HHHHHHHHhcCCCCcccCCcCCcccccc
Q psy11068        229 RLREHYKAVHESTKNFKCTYDGCKLLFS  256 (292)
Q Consensus       229 ~L~~H~~~~H~~~~~~~C~~~~C~~~f~  256 (292)
                      +|.+|++ +|++++||+|++  |+++|.
T Consensus         1 ~l~~H~~-~H~~~k~~~C~~--C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMR-THTGEKPYKCPY--CGKSFS   25 (26)
T ss_dssp             HHHHHHH-HHSSSSSEEESS--SSEEES
T ss_pred             CHHHHhh-hcCCCCCCCCCC--CcCeeC
Confidence            3667776 677777777765  777765

...

>PHA00616 hypothetical protein

Probab=98.43  E-value=1e-07  Score=54.55  Aligned_cols=33  Identities=15%  Similarity=0.282  Sum_probs=16.8

Q ss_pred             cccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCC
Q psy11068        243 NFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCP  278 (292)
Q Consensus       243 ~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  278 (292)
                      ||+|+.  ||+.|.+++.|..|++ .|++++|+.|+
T Consensus         1 pYqC~~--CG~~F~~~s~l~~H~r-~~hg~~~~~~~   33 (44)
T PHA00616          1 MYQCLR--CGGIFRKKKEVIEHLL-SVHKQNKLTLE   33 (44)
T ss_pred             CCccch--hhHHHhhHHHHHHHHH-HhcCCCcccee
Confidence            355544  5555555555555555 34455555544

>PHA00732 hypothetical protein

Probab=98.28  E-value=5.8e-07  Score=59.55  Aligned_cols=45  Identities=31%  Similarity=0.635  Sum_probs=26.1

Q ss_pred             ceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHH
Q psy11068        183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYK  235 (292)
Q Consensus       183 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~  235 (292)
                      ||.|..  |++.|.+...|+.|++.+|.   ++.|+.|++.|.   .|..|++
T Consensus         1 py~C~~--Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~   45 (79)
T PHA00732          1 MFKCPI--CGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFY   45 (79)
T ss_pred             CccCCC--CCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhc
Confidence            456655  66666666666666664222   245666666665   3555554

>PHA00616 hypothetical protein

Probab=98.27  E-value=4.3e-07  Score=52.02  Aligned_cols=34  Identities=21%  Similarity=0.377  Sum_probs=31.5

Q ss_pred             CcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        214 DLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       214 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      ||+|+.||+.|..++.|..|++ .|.+++++.|++
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r-~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLL-SVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHH-HhcCCCccceeE
Confidence            6999999999999999999999 788999999865

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.23  E-value=2.1e-06  Score=52.78  Aligned_cols=51  Identities=35%  Similarity=0.582  Sum_probs=30.9

Q ss_pred             CcccCCCcccccChhHHHHHHHHhcCCC-CcccCCcCCccccccCHHHHHhHhhhhc
Q psy11068        214 DLVCKGCGKQFKVPCRLREHYKAVHEST-KNFKCTYDGCKLLFSTKSALKRHNKSKH  269 (292)
Q Consensus       214 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~-~~~~C~~~~C~~~f~~~~~l~~H~~~~H  269 (292)
                      .|.|++|++. -+...|..|....|..+ +.+.|++  |...+.  ..|..|+...|
T Consensus         2 ~f~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~CPi--C~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGKG-FSESSLVEHCEDEHRSESKNVVCPI--CSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCCc-cCHHHHHHHHHhHCcCCCCCccCCC--chhhhh--hHHHHHHHHhc
Confidence            3667777773 34556777766666554 3567766  776543  36777776444

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00732 hypothetical protein

Probab=98.07  E-value=3.3e-06  Score=55.93  Aligned_cols=46  Identities=26%  Similarity=0.429  Sum_probs=38.6

Q ss_pred             CcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhh
Q psy11068        214 DLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKS  267 (292)
Q Consensus       214 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~  267 (292)
                      ||.|..|++.|.....|..|++..|.   ++.|+.  |++.|.   .|..|+++
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~--CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPV--CNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---CCccCC--CCCEeC---Chhhhhcc
Confidence            58899999999999999999874465   468977  999998   48888874

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.96  E-value=2e-05  Score=48.40  Aligned_cols=51  Identities=27%  Similarity=0.570  Sum_probs=37.6

Q ss_pred             ceeCCCCCCCcccCCHHHHHHHHHHhcCC-CCCcccCCCcccccChhHHHHHHHHhc
Q psy11068        183 PYMCDYKGCGKSFYLMASLKSHQRVHVTN-PEDLVCKGCGKQFKVPCRLREHYKAVH  238 (292)
Q Consensus       183 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-~~~~~C~~C~~~f~~~~~L~~H~~~~H  238 (292)
                      .|.|++  |++ ..+...|..|....|.. .+.+.|++|...+.  .+|..|+...|
T Consensus         2 ~f~CP~--C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPY--CGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCC--CCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            378888  999 55677888887765444 45688999987655  48888888555

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.91  E-value=2.6e-06  Score=69.55  Aligned_cols=53  Identities=28%  Similarity=0.528  Sum_probs=36.1

Q ss_pred             CCceeCCCCCCCcccCCHHHHHHHHHHhcC------------------CCCCcccCCCcccccChhHHHHH
Q psy11068        181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVT------------------NPEDLVCKGCGKQFKVPCRLREH  233 (292)
Q Consensus       181 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~------------------~~~~~~C~~C~~~f~~~~~L~~H  233 (292)
                      ++||+|++++|.+.|.+...|+-|+.--|-                  ..+||+|++|+|.|.....|+-|
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYH  417 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYH  417 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceec
Confidence            589999999999999999999999864331                  12455555555555555555544

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.79  E-value=1.5e-05  Score=39.57  Aligned_cols=16  Identities=56%  Similarity=0.841  Sum_probs=7.7

Q ss_pred             ccccccCHHHHHhHhh
Q psy11068        251 CKLLFSTKSALKRHNK  266 (292)
Q Consensus       251 C~~~f~~~~~l~~H~~  266 (292)
                      |++.|.++..|..|++
T Consensus         6 C~~~f~~~~~l~~H~~   21 (23)
T PF00096_consen    6 CGKSFSSKSNLKRHMR   21 (23)
T ss_dssp             TTEEESSHHHHHHHHH
T ss_pred             CCCccCCHHHHHHHHh
Confidence            4444444444444444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.66  E-value=2.6e-05  Score=38.66  Aligned_cols=23  Identities=35%  Similarity=0.749  Sum_probs=21.2

Q ss_pred             cccCCCcccccChhHHHHHHHHhc
Q psy11068        215 LVCKGCGKQFKVPCRLREHYKAVH  238 (292)
Q Consensus       215 ~~C~~C~~~f~~~~~L~~H~~~~H  238 (292)
                      |.|+.|++.|.++..|..|++ .|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~-~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMR-RH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHH-HH
T ss_pred             CCCCCCCCccCCHHHHHHHHh-HC
Confidence            689999999999999999998 45

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.58  E-value=4.1e-05  Score=62.71  Aligned_cols=25  Identities=36%  Similarity=0.731  Sum_probs=16.3

Q ss_pred             CcccccCCCCcccccChHHHHhHHh
Q psy11068         55 QLWSCPIVNCNFTSVNLNTFKIHLL   79 (292)
Q Consensus        55 ~~~~C~~~~C~~~~~~~~~l~~H~~   79 (292)
                      ++|+|++..|++.+++...|+-|+.
T Consensus       348 KpykCpV~gC~K~YknqnGLKYH~l  372 (423)
T COG5189         348 KPYKCPVEGCNKKYKNQNGLKYHML  372 (423)
T ss_pred             ceecCCCCCchhhhccccchhhhhh
Confidence            5666666666666666666666653

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.52  E-value=7.8e-05  Score=37.18  Aligned_cols=16  Identities=38%  Similarity=0.721  Sum_probs=6.8

Q ss_pred             ccccccCHHHHHhHhh
Q psy11068        251 CKLLFSTKSALKRHNK  266 (292)
Q Consensus       251 C~~~f~~~~~l~~H~~  266 (292)
                      |++.|.+...|..|++
T Consensus         6 C~~~~~~~~~l~~H~~   21 (24)
T PF13894_consen    6 CGKSFRSKSELRQHMR   21 (24)
T ss_dssp             TS-EESSHHHHHHHHH
T ss_pred             CCCcCCcHHHHHHHHH
Confidence            4444444444444444

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.51  E-value=7.6e-05  Score=52.25  Aligned_cols=23  Identities=39%  Similarity=0.972  Sum_probs=12.7

Q ss_pred             cccCCcCCccccccCHHHHHhHhhh
Q psy11068        243 NFKCTYDGCKLLFSTKSALKRHNKS  267 (292)
Q Consensus       243 ~~~C~~~~C~~~f~~~~~l~~H~~~  267 (292)
                      .+.|.+  |++.|.+...|..||++
T Consensus        50 ~~~C~~--C~~~f~s~~~l~~Hm~~   72 (100)
T PF12756_consen   50 SFRCPY--CNKTFRSREALQEHMRS   72 (100)
T ss_dssp             SEEBSS--SS-EESSHHHHHHHHHH
T ss_pred             CCCCCc--cCCCCcCHHHHHHHHcC
Confidence            455655  66666666666666554

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.50  E-value=8e-05  Score=37.15  Aligned_cols=24  Identities=38%  Similarity=0.840  Sum_probs=19.6

Q ss_pred             cccCCCcccccChhHHHHHHHHhc
Q psy11068        215 LVCKGCGKQFKVPCRLREHYKAVH  238 (292)
Q Consensus       215 ~~C~~C~~~f~~~~~L~~H~~~~H  238 (292)
                      |.|++|++.|.+...|..|+++.|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            689999999999999999998544

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.29  E-value=0.00022  Score=49.91  Aligned_cols=71  Identities=25%  Similarity=0.443  Sum_probs=14.5

Q ss_pred             ccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHH
Q psy11068        155 CEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHY  234 (292)
Q Consensus       155 C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~  234 (292)
                      |..  |+..|.+...|..|+...++...+       ....+.....+..+++....  ..+.|..|++.|.+...|..|+
T Consensus         2 C~~--C~~~f~~~~~l~~H~~~~H~~~~~-------~~~~l~~~~~~~~~~~~~~~--~~~~C~~C~~~f~s~~~l~~Hm   70 (100)
T PF12756_consen    2 CLF--CDESFSSVDDLLQHMKKKHGFDIP-------DQKYLVDPNRLLNYLRKKVK--ESFRCPYCNKTFRSREALQEHM   70 (100)
T ss_dssp             ----------------------------------------------------------SSEEBSSSS-EESSHHHHHHHH
T ss_pred             ccc--cccccccccccccccccccccccc-------cccccccccccccccccccC--CCCCCCccCCCCcCHHHHHHHH
Confidence            555  666666666666666544431111       11111122233333332211  2466666666666666666666


Q ss_pred             HH
Q psy11068        235 KA  236 (292)
Q Consensus       235 ~~  236 (292)
                      +.
T Consensus        71 ~~   72 (100)
T PF12756_consen   71 RS   72 (100)
T ss_dssp             HH
T ss_pred             cC
Confidence            63

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.25  E-value=0.00019  Score=37.06  Aligned_cols=22  Identities=41%  Similarity=0.801  Sum_probs=13.9

Q ss_pred             cccCCcCCccccccCHHHHHhHhh
Q psy11068        243 NFKCTYDGCKLLFSTKSALKRHNK  266 (292)
Q Consensus       243 ~~~C~~~~C~~~f~~~~~l~~H~~  266 (292)
                      ||+|..  |++.|.+...|..|++
T Consensus         1 ~~~C~~--C~~~F~~~~~l~~H~~   22 (27)
T PF13912_consen    1 PFECDE--CGKTFSSLSALREHKR   22 (27)
T ss_dssp             SEEETT--TTEEESSHHHHHHHHC
T ss_pred             CCCCCc--cCCccCChhHHHHHhH
Confidence            456655  6666666666666665

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.11  E-value=0.00033  Score=36.14  Aligned_cols=19  Identities=37%  Similarity=0.329  Sum_probs=11.2

Q ss_pred             ccccccchHHHHHhHhhcC
Q psy11068         99 CMWGFFSKHKLLRHMTSHD  117 (292)
Q Consensus        99 C~~~f~~~~~l~~H~~~h~  117 (292)
                      |++.|.+...|..|++.|.
T Consensus         7 C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    7 CGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             TTEEESSHHHHHHHHCTTT
T ss_pred             cCCccCChhHHHHHhHHhc
Confidence            6666666666666655543

>KOG4173|consensus

Probab=96.81  E-value=0.00055  Score=52.71  Aligned_cols=85  Identities=22%  Similarity=0.430  Sum_probs=56.3

Q ss_pred             ceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhc---------CCCCcccCCcCCccc
Q psy11068        183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH---------ESTKNFKCTYDGCKL  253 (292)
Q Consensus       183 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H---------~~~~~~~C~~~~C~~  253 (292)
                      .|.|.+-+|...|.....+..|..+-|+    -.|.+|.+.|.+...|..|+.--|         .|...|+|-+++|+.
T Consensus        79 ~~~cqvagc~~~~d~lD~~E~hY~~~h~----~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~  154 (253)
T KOG4173|consen   79 AFACQVAGCCQVFDALDDYEHHYHTLHG----NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTE  154 (253)
T ss_pred             cccccccchHHHHhhhhhHHHhhhhccc----chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhh
Confidence            3566666666666666666666554433    237777777777777777765444         244568888788888


Q ss_pred             cccCHHHHHhHhhhhcCC
Q psy11068        254 LFSTKSALKRHNKSKHLN  271 (292)
Q Consensus       254 ~f~~~~~l~~H~~~~H~~  271 (292)
                      .|.+......|+...|.=
T Consensus       155 KFkT~r~RkdH~I~~Hk~  172 (253)
T KOG4173|consen  155 KFKTSRDRKDHMIRMHKY  172 (253)
T ss_pred             hhhhhhhhhhHHHHhccC
Confidence            888888888887767743

>smart00355 ZnF_C2H2 zinc finger

Probab=96.72  E-value=0.0016  Score=32.75  Aligned_cols=16  Identities=50%  Similarity=0.845  Sum_probs=6.7

Q ss_pred             ccccccCHHHHHhHhh
Q psy11068        251 CKLLFSTKSALKRHNK  266 (292)
Q Consensus       251 C~~~f~~~~~l~~H~~  266 (292)
                      |+++|.....|..|++
T Consensus         6 C~~~f~~~~~l~~H~~   21 (26)
T smart00355        6 CGKVFKSKSALKEHMR   21 (26)
T ss_pred             CcchhCCHHHHHHHHH
Confidence            4444444444444443

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.63  E-value=0.0011  Score=38.95  Aligned_cols=18  Identities=33%  Similarity=0.711  Sum_probs=5.4

Q ss_pred             cCCCcccccChhHHHHHH
Q psy11068        217 CKGCGKQFKVPCRLREHY  234 (292)
Q Consensus       217 C~~C~~~f~~~~~L~~H~  234 (292)
                      |++|+..+....+|++|+
T Consensus        27 CP~C~a~~~~srnLrRHl   44 (54)
T PF09237_consen   27 CPICGAVIRQSRNLRRHL   44 (54)
T ss_dssp             -TTT--EESSHHHHHHHH
T ss_pred             CCcchhhccchhhHHHHH
Confidence            333333333333333333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=96.46  E-value=0.00077  Score=60.31  Aligned_cols=64  Identities=22%  Similarity=0.312  Sum_probs=36.0

Q ss_pred             CceeCCCCCCCcccCCHHHHHHHHHHhcCC-CCCcccCCCcccccChhHHHHHHHHhcCCCCcccC
Q psy11068        182 APYMCDYKGCGKSFYLMASLKSHQRVHVTN-PEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  246 (292)
Q Consensus       182 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C  246 (292)
                      ..+.+....|-..+.....+..|...+... ...+.+..|.+.|.....|..|++ .|....++-|
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  449 (467)
T COG5048         385 KKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKK-IHTNHAPLLC  449 (467)
T ss_pred             ccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCccccccccc-ccccCCceee
Confidence            334444444555566665666665555221 123556667777777767777666 5666555555

>smart00355 ZnF_C2H2 zinc finger

Probab=96.36  E-value=0.0035  Score=31.45  Aligned_cols=24  Identities=42%  Similarity=0.851  Sum_probs=21.9

Q ss_pred             cccCCCcccccChhHHHHHHHHhcC
Q psy11068        215 LVCKGCGKQFKVPCRLREHYKAVHE  239 (292)
Q Consensus       215 ~~C~~C~~~f~~~~~L~~H~~~~H~  239 (292)
                      |.|..|++.|.....|..|++ .|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~-~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR-THX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH-Hhc
Confidence            679999999999999999998 774

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.35  E-value=0.011  Score=49.50  Aligned_cols=144  Identities=19%  Similarity=0.312  Sum_probs=87.3

Q ss_pred             cccccCCCCcccccChHHHHhHHhhccCCCccccccCCCC--cccccccccchHHHHHhHhhcCCC---CCCccCCCccc
Q psy11068         56 LWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTAN--NTPCMWGFFSKHKLLRHMTSHDED---KKCYPCDQKNC  130 (292)
Q Consensus        56 ~~~C~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~~~~~--~~~C~~~f~~~~~l~~H~~~h~~~---~~~~~c~c~~C  130 (292)
                      .|.|+.-.|..+...+..|..|.+..++  .+.|.+|-.+  -..|.-...++..|..|...-..+   +.--.|.  .|
T Consensus       151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~--~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~--FC  226 (493)
T COG5236         151 SFKCPKSKCHRRCGSLKELKKHYKAQHG--FVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCI--FC  226 (493)
T ss_pred             HhcCCchhhhhhhhhHHHHHHHHHhhcC--cEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhh--hc
Confidence            4889988899999999999999987664  3567763111  001444556667788886544332   1111355  68


Q ss_pred             chhcCChHHHHHHHHhcCCCCcccccccc--cchhccChHHHHHHHhhhcCCCCceeCCCCCCC----cccCCHHHHHHH
Q psy11068        131 NKRFTTLSNLKMHMVRHGKPLTLCCEELG--CGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCG----KSFYLMASLKSH  204 (292)
Q Consensus       131 ~~~f~~~~~l~~H~~~h~~~~~~~C~~~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~----~~f~~~~~l~~H  204 (292)
                      ...|.+-..|.+|++.-+ ++-|.|+..+  -..-|.+...|..|.+.-+     |.|.+..|-    ..|.....|+.|
T Consensus       227 ~~~FYdDDEL~~HcR~~H-E~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h-----y~ct~qtc~~~k~~vf~~~~el~~h  300 (493)
T COG5236         227 KIYFYDDDELRRHCRLRH-EACHICDMVGPIRYQYFKSYEDLEAHFRNAH-----YCCTFQTCRVGKCYVFPYHTELLEH  300 (493)
T ss_pred             cceecChHHHHHHHHhhh-hhhhhhhccCccchhhhhCHHHHHHHhhcCc-----eEEEEEEEecCcEEEeccHHHHHHH
Confidence            888888888888887633 3344444311  1224666677777765433     555443342    356677777777


Q ss_pred             HHHhc
Q psy11068        205 QRVHV  209 (292)
Q Consensus       205 ~~~h~  209 (292)
                      +..-|
T Consensus       301 ~~~~h  305 (493)
T COG5236         301 LTRFH  305 (493)
T ss_pred             HHHHh
Confidence            65543

>KOG2231|consensus

Probab=96.31  E-value=0.013  Score=54.16  Aligned_cols=47  Identities=26%  Similarity=0.540  Sum_probs=23.7

Q ss_pred             eCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCc------ccccChhHHHHHHHHhc
Q psy11068        185 MCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCG------KQFKVPCRLREHYKAVH  238 (292)
Q Consensus       185 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~------~~f~~~~~L~~H~~~~H  238 (292)
                      .|.+  |...|.....|.+|++.+|     |.|.+|+      .-|..-..|..|.+.-|
T Consensus       184 ~C~~--C~~~fld~~el~rH~~~~h-----~~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  184 LCKF--CHERFLDDDELYRHLRFDH-----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             cchh--hhhhhccHHHHHHhhccce-----eheeecCcccccchhcccchHHHHHhhhcC
Confidence            4544  5555555555555555442     3344442      23444455555555434

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.15  E-value=0.005  Score=30.60  Aligned_cols=9  Identities=78%  Similarity=0.859  Sum_probs=3.4

Q ss_pred             HHHHHhHhh
Q psy11068        258 KSALKRHNK  266 (292)
Q Consensus       258 ~~~l~~H~~  266 (292)
                      +..|..|++
T Consensus        12 ~~~l~~H~~   20 (24)
T PF13909_consen   12 KSNLKRHLK   20 (24)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>KOG2231|consensus

Probab=96.10  E-value=0.018  Score=53.27  Aligned_cols=129  Identities=22%  Similarity=0.467  Sum_probs=82.6

Q ss_pred             ccccccchHHHHHhHhhcCCCCCCccCCCccc---------chhcCChHHHHHHHHhcCC-CC----cccccccccchhc
Q psy11068         99 CMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNC---------NKRFTTLSNLKMHMVRHGK-PL----TLCCEELGCGRKF  164 (292)
Q Consensus        99 C~~~f~~~~~l~~H~~~h~~~~~~~~c~c~~C---------~~~f~~~~~l~~H~~~h~~-~~----~~~C~~~~C~~~f  164 (292)
                      | -.|.+...|+.|+...|..   +.|.  +|         .....+...|..|+..--. +.    .-.|..  |...|
T Consensus       121 c-~~~~s~~~Lk~H~~~~H~~---~~c~--lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~--C~~~f  192 (669)
T KOG2231|consen  121 C-TEFKSVENLKNHMRDQHKL---HLCS--LCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKF--CHERF  192 (669)
T ss_pred             c-cchhHHHHHHHHHHHhhhh---hccc--cccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchh--hhhhh
Confidence            5 4555889999999766654   3444  23         3344566788888875221 11    246888  99999


Q ss_pred             cChHHHHHHHhhhcCCCCceeCCC----CCCCcccCCHHHHHHHHHHhcCCCCCcccC--CCc-ccc----cChhHHHHH
Q psy11068        165 QTMKQYSTHLKEHSNVSAPYMCDY----KGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCG-KQF----KVPCRLREH  233 (292)
Q Consensus       165 ~~~~~l~~H~~~h~~~~~~~~C~~----~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~--~C~-~~f----~~~~~L~~H  233 (292)
                      .....|..|++.++     |.|.+    .+++.-|.....|..|-+.+|     |.|.  .|. +.|    .....|.+|
T Consensus       193 ld~~el~rH~~~~h-----~~chfC~~~~~~neyy~~~~dLe~HfR~~H-----flCE~~~C~~~~f~~~~~~ei~lk~~  262 (669)
T KOG2231|consen  193 LDDDELYRHLRFDH-----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH-----FLCEEEFCRTKKFYVAFELEIELKAH  262 (669)
T ss_pred             ccHHHHHHhhccce-----eheeecCcccccchhcccchHHHHHhhhcC-----ccccccccccceeeehhHHHHHHHhh
Confidence            99999999999877     44544    123466778889999988775     5565  453 233    344445545


Q ss_pred             HHHhcCCCCcccC
Q psy11068        234 YKAVHESTKNFKC  246 (292)
Q Consensus       234 ~~~~H~~~~~~~C  246 (292)
                      .+ .+.-++.|.|
T Consensus       263 ~~-~~~~e~~~~~  274 (669)
T KOG2231|consen  263 NR-FIQHEKCYIC  274 (669)
T ss_pred             cc-ccchheeccC
Confidence            43 3444555666

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.10  E-value=0.0045  Score=36.43  Aligned_cols=38  Identities=21%  Similarity=0.393  Sum_probs=22.0

Q ss_pred             HHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcC
Q psy11068        171 STHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVT  210 (292)
Q Consensus       171 ~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~  210 (292)
                      ..+.+.+...+.|-.|+.  |+..+.+..+|++|+.+.|.
T Consensus        12 ~~~~k~~~~S~~PatCP~--C~a~~~~srnLrRHle~~H~   49 (54)
T PF09237_consen   12 TKKPKSKSQSEQPATCPI--CGAVIRQSRNLRRHLEIRHF   49 (54)
T ss_dssp             ----CCCCTTS--EE-TT--T--EESSHHHHHHHHHHHTT
T ss_pred             hhHHHHhhccCCCCCCCc--chhhccchhhHHHHHHHHhc
Confidence            445555555677888876  88888888888888877654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PRK04860 hypothetical protein; Provisional

Probab=96.02  E-value=0.0031  Score=47.95  Aligned_cols=36  Identities=22%  Similarity=0.539  Sum_probs=18.8

Q ss_pred             CcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCcccccc
Q psy11068        214 DLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFS  256 (292)
Q Consensus       214 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~  256 (292)
                      +|.|. |+.   ....+++|.+ +|+++++|.|..  |+..|.
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~r-i~~g~~~YrC~~--C~~~l~  154 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNR-VVRGEAVYRCRR--CGETLV  154 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHH-HhcCCccEECCC--CCceeE
Confidence            45555 554   4445555555 555555555544  555543

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=95.96  E-value=0.005  Score=30.90  Aligned_cols=21  Identities=33%  Similarity=0.819  Sum_probs=13.5

Q ss_pred             ccCCcCCccccccCHHHHHhHhh
Q psy11068        244 FKCTYDGCKLLFSTKSALKRHNK  266 (292)
Q Consensus       244 ~~C~~~~C~~~f~~~~~l~~H~~  266 (292)
                      |.|.+  |++.|.+...|..|++
T Consensus         1 ~~C~~--C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    1 FYCDI--CNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EEETT--TTEEESSHHHHHHHHT
T ss_pred             CCCCC--CCCCcCCHHHHHHHHC
Confidence            45655  6666666666666665

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.79  E-value=0.0019  Score=57.71  Aligned_cols=148  Identities=22%  Similarity=0.364  Sum_probs=91.4

Q ss_pred             ccchhcCChHHHHHHHH--hcCCC--CcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHH--
Q psy11068        129 NCNKRFTTLSNLKMHMV--RHGKP--LTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLK--  202 (292)
Q Consensus       129 ~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~--  202 (292)
                      .|...|.....|.+|.+  .|.++  +++.|....|++.|.....+..|...|.+ ..++.+....+...+.....-.  
T Consensus       294 ~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  372 (467)
T COG5048         294 QCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTS-ISPAKEKLLNSSSKFSPLLNNEPP  372 (467)
T ss_pred             cccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccC-CCccccccccCccccccccCCCCc
Confidence            67777777777777777  67777  77777722277777777777777777776 4555555444555544433311  


Q ss_pred             --HHHHHhcCCCCCccc--CCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCC
Q psy11068        203 --SHQRVHVTNPEDLVC--KGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCP  278 (292)
Q Consensus       203 --~H~~~h~~~~~~~~C--~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  278 (292)
                        ............+.+  ..|...+.....+..|.. .|...+++.|....|.+.|.....|..|++ .|....++.|.
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  450 (467)
T COG5048         373 QSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHII-THLSFRPYNCKNPPCSKSFNRHYNLIPHKK-IHTNHAPLLCS  450 (467)
T ss_pred             cchhhccCccCCccccccccchhhhhccccccccccc-cccccCCcCCCCCcchhhccCccccccccc-ccccCCceeec
Confidence              111111111223333  246666777777777765 676666444433448888888888888888 67777777665


Q ss_pred             C
Q psy11068        279 L  279 (292)
Q Consensus       279 ~  279 (292)
                      .
T Consensus       451 ~  451 (467)
T COG5048         451 I  451 (467)
T ss_pred             c
Confidence            3

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=95.76  E-value=0.0082  Score=29.79  Aligned_cols=23  Identities=26%  Similarity=0.511  Sum_probs=18.4

Q ss_pred             cccCCCcccccChhHHHHHHHHhc
Q psy11068        215 LVCKGCGKQFKVPCRLREHYKAVH  238 (292)
Q Consensus       215 ~~C~~C~~~f~~~~~L~~H~~~~H  238 (292)
                      |+|+.|+.... +..|.+|++..|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            68999999998 999999999555

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=95.69  E-value=0.0067  Score=30.42  Aligned_cols=17  Identities=35%  Similarity=0.573  Sum_probs=9.0

Q ss_pred             ccccccchHHHHHhHhh
Q psy11068         99 CMWGFFSKHKLLRHMTS  115 (292)
Q Consensus        99 C~~~f~~~~~l~~H~~~  115 (292)
                      |++.|.+...|..|++.
T Consensus         6 C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    6 CNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             TTEEESSHHHHHHHHTT
T ss_pred             CCCCcCCHHHHHHHHCc
Confidence            55555555555555543

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.61  E-value=0.0073  Score=31.00  Aligned_cols=22  Identities=45%  Similarity=0.827  Sum_probs=16.5

Q ss_pred             ccCCcCCccccccCHHHHHhHhhh
Q psy11068        244 FKCTYDGCKLLFSTKSALKRHNKS  267 (292)
Q Consensus       244 ~~C~~~~C~~~f~~~~~l~~H~~~  267 (292)
                      |.|.+  |++.|.+...|..|+++
T Consensus         2 ~~C~~--C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDA--CDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTT--TTBBBSSHHHHHCCTTS
T ss_pred             CCccc--CCCCcCCHHHHHHHHcc
Confidence            66766  88888888888877763

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG4173|consensus

Probab=95.56  E-value=0.012  Score=45.62  Aligned_cols=30  Identities=23%  Similarity=0.372  Sum_probs=21.9

Q ss_pred             CCCcccccccccchhccChHHHHHHHhhhc
Q psy11068        149 KPLTLCCEELGCGRKFQTMKQYSTHLKEHS  178 (292)
Q Consensus       149 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~  178 (292)
                      |...|.|..++|+..|.+...-..|+..-+
T Consensus       141 G~dMy~ClvEgCt~KFkT~r~RkdH~I~~H  170 (253)
T KOG4173|consen  141 GQDMYQCLVEGCTEKFKTSRDRKDHMIRMH  170 (253)
T ss_pred             CccHHHHHHHhhhhhhhhhhhhhhHHHHhc
Confidence            456688888888888888877777775443

>KOG2482|consensus

Probab=95.50  E-value=0.036  Score=46.47  Aligned_cols=50  Identities=36%  Similarity=0.561  Sum_probs=40.1

Q ss_pred             cccCCCcccccChhHHHHHHHHhcCC--------------------------CCcccCCcCCccccccCHHHHHhHhh
Q psy11068        215 LVCKGCGKQFKVPCRLREHYKAVHES--------------------------TKNFKCTYDGCKLLFSTKSALKRHNK  266 (292)
Q Consensus       215 ~~C~~C~~~f~~~~~L~~H~~~~H~~--------------------------~~~~~C~~~~C~~~f~~~~~l~~H~~  266 (292)
                      .+|-.|.....+...|..||..+|.-                          ...-.|..  |...|-....|..||.
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~--cd~~F~~e~~l~~hm~  355 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAE--CDLSFWKEPGLLIHMV  355 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhcccccc--ccccccCcchhhhhcc
Confidence            58999999999999999999999941                          01124644  8889999999999986

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.26  E-value=0.031  Score=46.91  Aligned_cols=132  Identities=24%  Similarity=0.517  Sum_probs=89.0

Q ss_pred             ccCCCcccchhcCChHHHHHHHHhcCCCCcccccccccch---------hccChHHHHHHHhhhcCC---CCceeCCCCC
Q psy11068        123 YPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGR---------KFQTMKQYSTHLKEHSNV---SAPYMCDYKG  190 (292)
Q Consensus       123 ~~c~c~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~---------~f~~~~~l~~H~~~h~~~---~~~~~C~~~~  190 (292)
                      |.|+-..|.........|+.|.+.-++  .+.|.+  |-.         ...++..|..|...-..+   ...=.|.+  
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H~--~~~C~~--C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~F--  225 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQHG--FVLCSE--CIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIF--  225 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhcC--cEEhHh--hhcCcccCccceeeeecccccccccCCccccCcCCCchhhh--
Confidence            677766777777778889999886433  233444  422         233556677776543221   12237988  


Q ss_pred             CCcccCCHHHHHHHHHHhcCCCCCcccCCCcc-------cccChhHHHHHHHHhcCCCCcccCCcCCcc----ccccCHH
Q psy11068        191 CGKSFYLMASLKSHQRVHVTNPEDLVCKGCGK-------QFKVPCRLREHYKAVHESTKNFKCTYDGCK----LLFSTKS  259 (292)
Q Consensus       191 C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~-------~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~----~~f~~~~  259 (292)
                      |...|..-..|.+|++..|.  +   |-+|++       -|..-..|..|.+..|     |.|.+.-|-    ..|....
T Consensus       226 C~~~FYdDDEL~~HcR~~HE--~---ChICD~v~p~~~QYFK~Y~~Le~HF~~~h-----y~ct~qtc~~~k~~vf~~~~  295 (493)
T COG5236         226 CKIYFYDDDELRRHCRLRHE--A---CHICDMVGPIRYQYFKSYEDLEAHFRNAH-----YCCTFQTCRVGKCYVFPYHT  295 (493)
T ss_pred             ccceecChHHHHHHHHhhhh--h---hhhhhccCccchhhhhCHHHHHHHhhcCc-----eEEEEEEEecCcEEEeccHH
Confidence            99999999999999998653  3   555554       4778889999987555     555432232    3589999


Q ss_pred             HHHhHhhhhcC
Q psy11068        260 ALKRHNKSKHL  270 (292)
Q Consensus       260 ~l~~H~~~~H~  270 (292)
                      .|..|+...|.
T Consensus       296 el~~h~~~~h~  306 (493)
T COG5236         296 ELLEHLTRFHK  306 (493)
T ss_pred             HHHHHHHHHhh
Confidence            99999987774

>PRK04860 hypothetical protein; Provisional

Probab=95.11  E-value=0.012  Score=44.86  Aligned_cols=40  Identities=20%  Similarity=0.615  Sum_probs=34.3

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCCccCCccccccc
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSFLSTQ  290 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~  290 (292)
                      -+|.|.   |+.   ....+++|.+ .|.++++|.|..  |+..|.-..
T Consensus       118 ~~Y~C~---C~~---~~~~~rrH~r-i~~g~~~YrC~~--C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK---CQE---HQLTVRRHNR-VVRGEAVYRCRR--CGETLVFKG  157 (160)
T ss_pred             EEEEcC---CCC---eeCHHHHHHH-HhcCCccEECCC--CCceeEEec
Confidence            479994   987   7788999999 799999999998  999987543

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.00  E-value=0.013  Score=30.11  Aligned_cols=17  Identities=41%  Similarity=0.536  Sum_probs=11.2

Q ss_pred             ccccccchHHHHHhHhh
Q psy11068         99 CMWGFFSKHKLLRHMTS  115 (292)
Q Consensus        99 C~~~f~~~~~l~~H~~~  115 (292)
                      |++.|.+...|..|+++
T Consensus         7 C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    7 CDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             TTBBBSSHHHHHCCTTS
T ss_pred             CCCCcCCHHHHHHHHcc
Confidence            66666666666666654

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG1146|consensus

Probab=94.97  E-value=0.01  Score=58.22  Aligned_cols=139  Identities=15%  Similarity=0.247  Sum_probs=70.9

Q ss_pred             cchhcCChHHHHHHHH-hcCCCCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHh
Q psy11068        130 CNKRFTTLSNLKMHMV-RHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH  208 (292)
Q Consensus       130 C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h  208 (292)
                      |+..+.++..+.-|+. .|...+.|.|+.  |+..|+....|-.|++.-+.....-.|.     .. ...-.+.+ ..+-
T Consensus       442 ~e~~~~s~r~~~~~t~~L~S~~kt~~cpk--c~~~yk~a~~L~vhmRskhp~~~~~~c~-----~g-q~~~~~ar-g~~~  512 (1406)
T KOG1146|consen  442 AEPLLESKRSLEGQTVVLHSFFKTLKCPK--CNWHYKLAQTLGVHMRSKHPESQSAYCK-----AG-QNHPRLAR-GEVY  512 (1406)
T ss_pred             hhhhhhhhcccccceeeeecccccccCCc--cchhhhhHHHhhhcccccccccchhHhH-----hc-cccccccc-cccc
Confidence            4444444444444433 244456666766  7777777777777766522101111110     00 00000000 0001


Q ss_pred             cCCCCCcccCCCcccccChhHHHHHHHH-hcC-----------------------------------C------CCcccC
Q psy11068        209 VTNPEDLVCKGCGKQFKVPCRLREHYKA-VHE-----------------------------------S------TKNFKC  246 (292)
Q Consensus       209 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~-~H~-----------------------------------~------~~~~~C  246 (292)
                      ..+.++|.|..|..++..+..|..|++. .|.                                   +      .-+|.|
T Consensus       513 ~~~~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C  592 (1406)
T KOG1146|consen  513 RCPGKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRC  592 (1406)
T ss_pred             cCCCCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcch
Confidence            1233567777777777777777777652 121                                   0      113778


Q ss_pred             CcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        247 TYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       247 ~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      .+  |++.-+-..+|+.||.+.+....|..+..
T Consensus       593 ~v--c~yetniarnlrihmtss~~s~~p~~~Lq  623 (1406)
T KOG1146|consen  593 EV--CSYETNIARNLRIHMTASPSSSPPSLVLQ  623 (1406)
T ss_pred             hh--hcchhhhhhccccccccCCCCCChHHHhh
Confidence            77  88887777788888876555544444443

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=93.62  E-value=0.067  Score=26.84  Aligned_cols=18  Identities=44%  Similarity=0.920  Sum_probs=8.9

Q ss_pred             ccCCCcccccChhHHHHHH
Q psy11068        216 VCKGCGKQFKVPCRLREHY  234 (292)
Q Consensus       216 ~C~~C~~~f~~~~~L~~H~  234 (292)
                      .|+.|++.| ....|.+|+
T Consensus         4 ~C~~CgR~F-~~~~l~~H~   21 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHE   21 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHH
Confidence            355555555 344455554

>KOG1146|consensus

Probab=93.29  E-value=0.029  Score=55.19  Aligned_cols=26  Identities=27%  Similarity=0.469  Sum_probs=22.7

Q ss_pred             CCCcccCCcCCccccccCHHHHHhHhhh
Q psy11068        240 STKNFKCTYDGCKLLFSTKSALKRHNKS  267 (292)
Q Consensus       240 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~  267 (292)
                      +.++|.|..  |..+++.+.+|..|+.+
T Consensus       515 ~~~p~~C~~--C~~stttng~LsihlqS  540 (1406)
T KOG1146|consen  515 PGKPYPCRA--CNYSTTTNGNLSIHLQS  540 (1406)
T ss_pred             CCCccccee--eeeeeecchHHHHHHHH
Confidence            346899977  99999999999999875

>smart00451 ZnF_U1 U1-like zinc finger

Probab=92.54  E-value=0.081  Score=28.80  Aligned_cols=22  Identities=27%  Similarity=0.535  Sum_probs=12.6

Q ss_pred             CcccCCCcccccChhHHHHHHH
Q psy11068        214 DLVCKGCGKQFKVPCRLREHYK  235 (292)
Q Consensus       214 ~~~C~~C~~~f~~~~~L~~H~~  235 (292)
                      +|.|.+|++.|.....+..|++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            3556666666665555555543

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=92.32  E-value=0.13  Score=25.76  Aligned_cols=20  Identities=30%  Similarity=0.688  Sum_probs=17.2

Q ss_pred             ccCCcCCccccccCHHHHHhHhh
Q psy11068        244 FKCTYDGCKLLFSTKSALKRHNK  266 (292)
Q Consensus       244 ~~C~~~~C~~~f~~~~~l~~H~~  266 (292)
                      ..|++  ||+.| ....|..|+.
T Consensus         3 ~~C~~--CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    3 VPCPI--CGRKF-NPDRLEKHEK   22 (25)
T ss_pred             CcCCC--CCCEE-CHHHHHHHHH
Confidence            57988  99999 7888999986

>smart00451 ZnF_U1 U1-like zinc finger

Probab=91.74  E-value=0.14  Score=27.88  Aligned_cols=23  Identities=26%  Similarity=0.691  Sum_probs=20.8

Q ss_pred             cccCCcCCccccccCHHHHHhHhhh
Q psy11068        243 NFKCTYDGCKLLFSTKSALKRHNKS  267 (292)
Q Consensus       243 ~~~C~~~~C~~~f~~~~~l~~H~~~  267 (292)
                      +|.|.+  |++.|.....+..|++.
T Consensus         3 ~~~C~~--C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKL--CNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccc--cCCccCCHHHHHHHHCh
Confidence            588988  99999999999999874

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2785|consensus

Probab=91.18  E-value=0.75  Score=39.55  Aligned_cols=52  Identities=25%  Similarity=0.372  Sum_probs=33.9

Q ss_pred             CcccCCCcccccChhHHHHHHHHhcC----------------------CCCcccCCcCCcc---ccccCHHHHHhHhhh
Q psy11068        214 DLVCKGCGKQFKVPCRLREHYKAVHE----------------------STKNFKCTYDGCK---LLFSTKSALKRHNKS  267 (292)
Q Consensus       214 ~~~C~~C~~~f~~~~~L~~H~~~~H~----------------------~~~~~~C~~~~C~---~~f~~~~~l~~H~~~  267 (292)
                      |-.|-.|++.+.+...-..||...|.                      -..-|.|-+  |.   +.|.+-.+.+.||..
T Consensus       166 Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~--CN~~~~~f~sleavr~HM~~  242 (390)
T KOG2785|consen  166 PTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLF--CNELGRPFSSLEAVRAHMRD  242 (390)
T ss_pred             CcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEE--eccccCcccccHHHHHHHhh
Confidence            35567777777776666677664443                      113466777  77   778777788888763

>KOG2482|consensus

Probab=90.52  E-value=0.32  Score=40.99  Aligned_cols=89  Identities=20%  Similarity=0.313  Sum_probs=56.2

Q ss_pred             hHHHHHHHhhhcCCCCceeCCCCCCCcccC-CHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCccc
Q psy11068        167 MKQYSTHLKEHSNVSAPYMCDYKGCGKSFY-LMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFK  245 (292)
Q Consensus       167 ~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~-~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~  245 (292)
                      +..|.++++.-.+.....+|-+  |...+. .++....|+-..|+-.--     =.--...-..|..|++   .....+.
T Consensus       128 ~eaLeqqQ~Eredt~fslqClF--Cn~e~lgnRs~~l~Hlf~~H~lniG-----lpDniVyvnelLehLk---ekL~r~~  197 (423)
T KOG2482|consen  128 KEALEQQQKEREDTIFSLQCLF--CNNEGLGNRSEILEHLFHVHGLNIG-----LPDNIVYVNELLEHLK---EKLERLR  197 (423)
T ss_pred             HHHHHHHHHHhcCCeeeeEEEE--ecchhcccHHHHHHHHHHHhhhccC-----CCcceeeHHHHHHHHH---HHHhhhe
Confidence            3455566555444455678888  887764 556677776543331100     0012233456777765   3345689


Q ss_pred             CCcCCccccccCHHHHHhHhhh
Q psy11068        246 CTYDGCKLLFSTKSALKRHNKS  267 (292)
Q Consensus       246 C~~~~C~~~f~~~~~l~~H~~~  267 (292)
                      |-+  |.+.|..+..|+.|||.
T Consensus       198 CLy--CekifrdkntLkeHMrk  217 (423)
T KOG2482|consen  198 CLY--CEKIFRDKNTLKEHMRK  217 (423)
T ss_pred             eee--eccccCCcHHHHHHHHh
Confidence            999  99999999999999984

>KOG4124|consensus

Probab=89.21  E-value=0.12  Score=43.61  Aligned_cols=54  Identities=7%  Similarity=0.009  Sum_probs=40.1

Q ss_pred             CCCcccccccccchhccChHHHHHHHhh----hcCCCCceeCCCCCCCcccCCHHHHHHHH
Q psy11068        149 KPLTLCCEELGCGRKFQTMKQYSTHLKE----HSNVSAPYMCDYKGCGKSFYLMASLKSHQ  205 (292)
Q Consensus       149 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~----h~~~~~~~~C~~~~C~~~f~~~~~l~~H~  205 (292)
                      .+.++.|..++|.++.........|-..    .....+||+|.   |++.+.++..|+.|-
T Consensus       175 EE~~~S~~vp~~~~~~~~~Ns~~~~S~~~~~T~~t~~~p~k~~---~~~~~~T~~~l~~HS  232 (442)
T KOG4124|consen  175 EEYRVSVVVPAAAAAAAAANSSDMSSDEASSTAETTGTPKKMP---ESLVMDTSSPLSDHS  232 (442)
T ss_pred             ccccccccCchhhhhhhccccccccccccccccccccCCccCc---ccccccccchhhhcc
Confidence            4688999998998888766555444322    11226899997   999999999998885

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=89.04  E-value=0.22  Score=29.91  Aligned_cols=30  Identities=27%  Similarity=0.428  Sum_probs=22.2

Q ss_pred             CCCCCcccCCCcccccChhHHHHHHHHhcC
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHYKAVHE  239 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~  239 (292)
                      .|+.-+.|+.|+..|....+..+|....|.
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            355667888888888888888888765663

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=88.75  E-value=0.9  Score=32.21  Aligned_cols=24  Identities=21%  Similarity=0.750  Sum_probs=20.7

Q ss_pred             ccC----CcCCccccccCHHHHHhHhhhhc
Q psy11068        244 FKC----TYDGCKLLFSTKSALKRHNKSKH  269 (292)
Q Consensus       244 ~~C----~~~~C~~~f~~~~~l~~H~~~~H  269 (292)
                      |.|    ..  |++.+.+...+.+|++..|
T Consensus        81 ~~C~~~~~~--C~y~~~~~~~m~~H~~~~H  108 (109)
T PF12013_consen   81 YRCQCDPPH--CGYITRSKKTMRKHWRKEH  108 (109)
T ss_pred             eeeecCCCC--CCcEeccHHHHHHHHHHhc
Confidence            789    66  9999999999999998655

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>KOG2893|consensus

Probab=85.99  E-value=0.24  Score=39.49  Aligned_cols=50  Identities=30%  Similarity=0.537  Sum_probs=33.8

Q ss_pred             CCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhc
Q psy11068        181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH  238 (292)
Q Consensus       181 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H  238 (292)
                      .++| |-+  |++.|.....|.+|++..     -|+|.+|-+..-+--.|..|--.+|
T Consensus         9 ~kpw-cwy--cnrefddekiliqhqkak-----hfkchichkkl~sgpglsihcmqvh   58 (341)
T KOG2893|consen    9 DKPW-CWY--CNREFDDEKILIQHQKAK-----HFKCHICHKKLFSGPGLSIHCMQVH   58 (341)
T ss_pred             CCce-eee--cccccchhhhhhhhhhhc-----cceeeeehhhhccCCCceeehhhhh
Confidence            3444 666  888888888888887765     3778888776555555666644355

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=85.20  E-value=0.58  Score=25.17  Aligned_cols=7  Identities=57%  Similarity=1.350  Sum_probs=2.8

Q ss_pred             cccCCCc
Q psy11068        215 LVCKGCG  221 (292)
Q Consensus       215 ~~C~~C~  221 (292)
                      +.|++|+
T Consensus        18 ~~CP~Cg   24 (33)
T cd00350          18 WVCPVCG   24 (33)
T ss_pred             CcCcCCC
Confidence            3344443

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=85.16  E-value=4.4  Score=30.49  Aligned_cols=60  Identities=25%  Similarity=0.404  Sum_probs=41.6

Q ss_pred             CcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCC
Q psy11068        214 DLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFP  276 (292)
Q Consensus       214 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~  276 (292)
                      ...|+.|.-...-. .+..--| .+.+.|+-.|..+.|... .+-..|++|.+..|...+|-.
T Consensus        80 ~L~CPLCRG~V~GW-tvve~AR-~~LN~K~RsC~~e~C~F~-GtY~eLrKHar~~HP~~rP~~  139 (162)
T PF07800_consen   80 ELACPLCRGEVKGW-TVVEPAR-RFLNAKKRSCSQESCSFS-GTYSELRKHARSEHPSARPSE  139 (162)
T ss_pred             cccCccccCceece-EEchHHH-HHhccCCccCcccccccc-cCHHHHHHHHHhhCCCCCCcc
Confidence            47799995332222 1222234 567788888988889854 677789999999998887754

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG4377|consensus

Probab=80.83  E-value=0.74  Score=39.90  Aligned_cols=65  Identities=25%  Similarity=0.592  Sum_probs=39.5

Q ss_pred             cccccccchHHHHHhHhhcCCCC-----------CCccCCCcccchhcCChHHHHHHHHhcCCC-------Ccccccccc
Q psy11068         98 PCMWGFFSKHKLLRHMTSHDEDK-----------KCYPCDQKNCNKRFTTLSNLKMHMVRHGKP-------LTLCCEELG  159 (292)
Q Consensus        98 ~C~~~f~~~~~l~~H~~~h~~~~-----------~~~~c~c~~C~~~f~~~~~l~~H~~~h~~~-------~~~~C~~~~  159 (292)
                      .|+..+..+..+.+|...|....           ..|.|-...|.+   +-++...|-.-|+..       -.|.|...+
T Consensus       278 ~C~ykr~~k~DvirH~~~hkkrdnsL~dgf~rfs~syhC~~~~C~k---sTsdV~~h~nFht~~~n~GfrrthfhC~r~g  354 (480)
T KOG4377|consen  278 YCFYKRGQKNDVIRHVEIHKKRDNSLIDGFHRFSNSYHCTGQICEK---STSDVLLHDNFHTDKRNNGFRRTHFHCQRIG  354 (480)
T ss_pred             cccccccchhhhHHHHHHHhhcccccccchhhcCccchhhhcccCc---ccccccccCccccccccCceecceeEEeccC
Confidence            38877777888888887774332           235676667877   344555555555322       236677744


Q ss_pred             cchhcc
Q psy11068        160 CGRKFQ  165 (292)
Q Consensus       160 C~~~f~  165 (292)
                      |-.+|.
T Consensus       355 CTdtfK  360 (480)
T KOG4377|consen  355 CTDTFK  360 (480)
T ss_pred             Cccccc
Confidence            445555

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.50  E-value=1.5  Score=25.28  Aligned_cols=22  Identities=41%  Similarity=0.732  Sum_probs=8.6

Q ss_pred             CcccCCCcccccCh----hHHHHHHH
Q psy11068        214 DLVCKGCGKQFKVP----CRLREHYK  235 (292)
Q Consensus       214 ~~~C~~C~~~f~~~----~~L~~H~~  235 (292)
                      ...|..|++.+...    +.|..|++
T Consensus        16 ~a~C~~C~~~~~~~~~~ts~l~~HL~   41 (45)
T PF02892_consen   16 KAKCKYCGKVIKYSSGGTSNLKRHLK   41 (45)
T ss_dssp             -EEETTTTEE-----SSTHHHHHHHH
T ss_pred             eEEeCCCCeEEeeCCCcHHHHHHhhh
Confidence            34455555544432    44555553

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	292
1tf6_A	190	Co-crystal Structure Of Xenopus Tfiiia Zinc Finger		9e-16
1tf6_A	190	Co-crystal Structure Of Xenopus Tfiiia Zinc Finger		7e-13
1tf6_A	190	Co-crystal Structure Of Xenopus Tfiiia Zinc Finger		1e-07
2gli_A	155	Five-Finger GliDNA COMPLEX Length = 155		7e-10
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		8e-10
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		9e-10
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		3e-09
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		1e-08
2rpc_A	155	Solution Structure Of The Tandem Zf-C2h2 Domains Fr		5e-07
1tf3_A	92	Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures		2e-06
1tf3_A	92	Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures		1e-05
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		5e-05
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		7e-05
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		5e-05
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		6e-05
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		8e-05
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		1e-04
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		2e-04
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		4e-04
2dlk_A	79	Solution Structure Of The First And The Second Zf-C		4e-04
1un6_B	87	The Crystal Structure Of A Zinc Finger - Rna Comple		4e-04
2j7j_A	85	Invariance Of The Zinc Finger Module: A Comparison		4e-04
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		6e-04

>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain Bound To The 5s Ribosomal Rna Gene Internal Control Region Length = 190

Iteration: 1
 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 80/174 (45%), Gaps = 11/174 (6%)
Query: 57  WSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH 116
           + C   +C          + HL KH  ++PF CK        C  GF S H L RH  +H
Sbjct: 13  YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCK-----EEGCEKGFTSLHHLTRHSLTH 67
Query: 117 DEDKKCYPCDQKNCNKRFTTLSNLKMHMVR--HGKPLTLCCEELGCGRKFQTMKQYSTHL 174
             +K  + CD   C+ RFTT +N+K H  R  + K     C    CG+ F+   Q   H 
Sbjct: 68  TGEKN-FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQ 126
Query: 175 KEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNP--EDLVCKGCGKQFKV 226
             H+    PY C ++GC K F L + LK H++VH   P  +D  C   GK + +
Sbjct: 127 FSHTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTL 179

>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain Bound To The 5s Ribosomal Rna Gene Internal Control Region Length = 190

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 5/147 (3%)
Query: 108 KLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTM 167
           KL  H+  H  +K  +PC ++ C K FT+L +L  H + H       C+  GC  +F T 
Sbjct: 29  KLQAHLCKHTGEKP-FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTK 87
Query: 168 KQYSTHLKEHSNVSA-PYMCDYKGCGKSFYLMASLKSHQRVHVTN-PEDLVCKGCGKQFK 225
                H     N+    Y+C ++ CGK+F     LK HQ  H    P +   +GC K+F 
Sbjct: 88  ANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFS 147
Query: 226 VPCRLREHYK--AVHESTKNFKCTYDG 250
           +P RL+ H K  A +   K+  C++ G
Sbjct: 148 LPSRLKRHEKVHAGYPCKKDDSCSFVG 174

>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain Bound To The 5s Ribosomal Rna Gene Internal Control Region Length = 190

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 180 VSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAV 237
           V   Y+C +  CG ++     L++H   H T  +   CK  GC K F     L  H    
Sbjct: 9   VYKRYICSFADCGAAYNKNWKLQAHLCKH-TGEKPFPCKEEGCEKGFTSLHHLTRH-SLT 66
Query: 238 HESTKNFKCTYDGCKLLFSTKSALKRH-NKSKHLNMRMFPCPLVTCGKSF 286
           H   KNF C  DGC L F+TK+ +K+H N+  ++ + ++ C    CGK+F
Sbjct: 67  HTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAF 116

>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 125 CDQKNCNKRFTTLSNLKMHMVR---HGKPLTLCCEELGCGRKFQTMK-QY--STHLKEHS 178
           C    C++ F +   L  H+     HG+     C   GC R+ +  K QY    H++ H+
Sbjct: 4   CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 179 NVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKA 236
               P+ C ++GC KS+  + +LK+H R H T  +  +C+  GC K F       +H   
Sbjct: 64  G-EKPHKCTFEGCRKSYSRLENLKTHLRSH-TGEKPYMCEHEGCSKAFSNASDRAKHQNR 121
Query: 237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKH 269
            H + K + C   GC   ++  S+L++H K+ H
Sbjct: 122 THSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 70/169 (41%), Gaps = 12/169 (7%)
Query: 99  CMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEEL 158
           C   F     L  H  +H  +K  Y C +  C K F+   +L  H   H       C E 
Sbjct: 27  CGKSFSRSDHLAEHQRTHTGEKP-YKCPE--CGKSFSDKKDLTRHQRTHTGEKPYKCPE- 82
Query: 159 GCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK 218
            CG+ F        H + H+    PY C    CGKSF  +A L++HQR H T  +   C 
Sbjct: 83  -CGKSFSQRANLRAHQRTHTG-EKPYACPE--CGKSFSQLAHLRAHQRTH-TGEKPYKCP 137
Query: 219 GCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKS 267
            CGK F     L  H +  H   K +KC    C   FS + AL  H ++
Sbjct: 138 ECGKSFSREDNLHTHQR-THTGEKPYKCPE--CGKSFSRRDALNVHQRT 183

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 149 KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 208
           +P T+ C   GC + F+       HL  H     P +     CGK+F   + LK HQ VH
Sbjct: 2   EPRTIACPHKGCTKMFRDNSAMRKHLHTH----GPRVHVCAECGKAFVESSKLKRHQLVH 57
Query: 209 VTN-PEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRH 264
               P     +GCGK+F +   LR H + +H   + + C +DGC   F+  + LK H
Sbjct: 58  TGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPYVCPFDGCNKKFAQSTNLKSH 113

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 186 CDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFK 245
           C +KGC K F   ++++ H  +H   P   VC  CGK F    +L+ H + VH   K F+
Sbjct: 8   CPHKGCTKMFRDNSAMRKH--LHTHGPRVHVCAECGKAFVESSKLKRH-QLVHTGEKPFQ 64
Query: 246 CTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSFLST 289
           CT++GC   FS    L+ H +  H   R + CP   C K F  +
Sbjct: 65  CTFEGCGKRFSLDFNLRTHVRI-HTGDRPYVCPFDGCNKKFAQS 107

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 155 CEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPED 214
           C   GC +++  +     H ++H+    PY CD+K C + F     LK HQR H T  + 
Sbjct: 9   CAYPGCNKRYFKLSHLQMHSRKHTG-EKPYQCDFKDCERRFSRSDQLKRHQRRH-TGVKP 66
Query: 215 LVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHN 265
             CK C ++F     L+ H +  H   K F C +  C+  F+    L RH+
Sbjct: 67  FQCKTCQRKFSRSDHLKTHTR-THTGEKPFSCRWPSCQKKFARSDELVRHH 116

>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 56/115 (48%), Gaps = 14/115 (12%)
Query: 160 CGRKFQTMKQYSTHLK-EHSNVSAP----YMCDYKGC---GKSFYLMASLKSHQRVHVTN 211
           C R F TM +  TH+  EH  V  P    ++C ++ C   GKSF     L +H RVH T 
Sbjct: 31  CDRTFSTMHELVTHVTMEH--VGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH-TG 87
Query: 212 PEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRH 264
            +   C   GCGK F     L+ H K  H   K FKC ++GC   F+  S  K+H
Sbjct: 88  EKPFPCPFPGCGKIFARSENLKIH-KRTHTGEKPFKCEFEGCDRRFANSSDRKKH 141

>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures Length = 92

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 57  WSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH 116
           + C   +C          + HL KH  ++PF CK        C  GF S H L RH  +H
Sbjct: 4   YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCK-----EEGCEKGFTSLHHLTRHSLTH 58
Query: 117 DEDKKCYPCDQKNCNKRFTTLSNLKMHMVR 146
             +K  + CD   C+ RFTT +N+K H  R
Sbjct: 59  TGEKN-FTCDSDGCDLRFTTKANMKKHFNR 87

>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures Length = 92

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 184 YMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHEST 241
           Y+C +  CG ++     L++H   H T  +   CK  GC K F     L  H    H   
Sbjct: 4   YICSFADCGAAYNKNWKLQAHLSKH-TGEKPFPCKEEGCEKGFTSLHHLTRH-SLTHTGE 61
Query: 242 KNFKCTYDGCKLLFSTKSALKRH 264
           KNF C  DGC L F+TK+ +K+H
Sbjct: 62  KNFTCDSDGCDLRFTTKANMKKH 84

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 149 KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 208
           +  T  C+  GCG+ +        HL+ H+    PY CD+ GCG  F     L  H R H
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTG-EKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 209 VTNPEDLVCKGCGKQFKVPCRLREHYK 235
            T      C+ C + F     L  H K
Sbjct: 61  -TGHRPFQCQKCDRAFSRSDHLALHMK 86

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTN-PEDLVCKGCGKQFKVPCRLREHYKAVHE 239
           +A + CDY GCGK++   + LK+H R H    P      GCG +F     L  HY+  H 
Sbjct: 3   TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HT 61
Query: 240 STKNFKCTYDGCKLLFSTKSALKRHNK 266
             + F+C    C   FS    L  H K
Sbjct: 62  GHRPFQC--QKCDRAFSRSDHLALHMK 86

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 149 KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 208
           +  T  C+  GCG+ +        HL+ H+    PY CD+ GCG  F     L  H R H
Sbjct: 3   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTG-EKPYHCDWDGCGWKFARSDELTRHYRKH 61
Query: 209 VTNPEDLVCKGCGKQFKVPCRLREHYK 235
            T      C+ C + F     L  H K
Sbjct: 62  -TGHRPFQCQKCDRAFSRSDHLALHMK 87

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTN-PEDLVCKGCGKQFKVPCRLREHYKAVHE 239
           +A + CDY GCGK++   + LK+H R H    P      GCG +F     L  HY+  H 
Sbjct: 4   TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HT 62
Query: 240 STKNFKCTYDGCKLLFSTKSALKRHNK 266
             + F+C    C   FS    L  H K
Sbjct: 63  GHRPFQC--QKCDRAFSRSDHLALHMK 87

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 44  SSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGF 103
           S + G + +K+++  C    C       +  K HL  H  ++P+KC         C W F
Sbjct: 3   SGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEG-----CDWRF 57
Query: 104 FSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 147
               +L RH   H   K   P     CN+ F+   +L +HM RH
Sbjct: 58  ARSDELTRHYRKHTGAK---PFQCGVCNRSFSRSDHLALHMKRH 98

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 180 VSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHE 239
           +  PY C    CGKSF   ++L+ HQR H T  +   C  CGK F     L++H +  H 
Sbjct: 1   MEKPYKCPE--CGKSFSQSSNLQKHQRTH-TGEKPYKCPECGKSFSQSSDLQKHQR-THT 56
Query: 240 STKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMR 273
             K +KC    C   FS    L RH ++ H N +
Sbjct: 57  GEKPYKCPE--CGKSFSRSDHLSRHQRT-HQNKK 87

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 160 CGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKG 219
           CG+ F+     STHL  HS+ + PY C Y  CGK F+  + +K H  +H T  +   C+ 
Sbjct: 7   CGKSFKRSSTLSTHLLIHSD-TRPYPCQY--CGKRFHQKSDMKKHTFIH-TGEKPHKCQV 62
Query: 220 CGKQFKVPCRLREHYK 235
           CGK F     L  H +
Sbjct: 63  CGKAFSQSSNLITHSR 78

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 123 YPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA 182
           Y C  ++C++RF+  ++L  H+  H       C    C R F      +TH++ H+    
Sbjct: 5   YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCR--ICMRNFSRSDHLTTHIRTHTG-EK 61
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHV 209
           P+ CD   CG+ F      K H ++H+
Sbjct: 62  PFACDI--CGRKFARSDERKRHTKIHL 86

>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2 Domains Of Zinc Finger Protein 692 Length = 79

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 240 STKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
            +    C + GC  +FS +  L  H K +H++ + F CP   CGKSF
Sbjct: 4   GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSF 50

>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex Reveals Two Modes Of Molecular Recognition Length = 87

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 155 CEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNP-- 212
           C    CG+ F+   Q   H   H+    PY C ++GC K F L + LK H++VH   P  
Sbjct: 4   CHFENCGKAFKKHNQLKVHQFSHTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCK 62
Query: 213 EDLVCKGCGKQFKV 226
           +D  C   GK + +
Sbjct: 63  KDDSCSFVGKTWTL 76

>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The Free Structure With Those In Nucleic-Acid Complexes Length = 85

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 155 CEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNP-- 212
           C    CG+ F+   Q   H   H+    PY C ++GC K F L + LK H++VH   P  
Sbjct: 4   CHFENCGKAFKKHNQLKVHQFSHTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCK 62
Query: 213 EDLVCKGCGKQFKV 226
           +D  C   GK + +
Sbjct: 63  KDDSCSFVGKTWTL 76

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 123 YPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA 182
           Y C  ++C++RF+  + L  H+  H       C    C R F      +TH++ H+    
Sbjct: 5   YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCR--ICMRNFSRSDHLTTHIRTHTG-EK 61
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHV 209
           P+ CD   CG+ F      K H ++H+
Sbjct: 62  PFACDI--CGRKFARSDERKRHTKIHL 86

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	292
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	9e-24
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	4e-18
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	5e-14
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-21
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-18
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	4e-17
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	7e-11
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-17
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-15
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	7e-14
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-17
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-16
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-10
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	5e-15
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	6e-15
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-13
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	3e-12
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	6e-11
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-04
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-11
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	7e-10
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-11
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	1e-08
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	7e-08
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-10
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	4e-07
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-06
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	7e-10
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-07
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	3e-05
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	1e-09
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	1e-07
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	9e-06
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-09
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	4e-07
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-08
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	8e-08
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-07
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-06
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	9e-08
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	3e-07
2epa_A	72	Krueppel-like factor 10; transforming growth facto	3e-07
2epa_A	72	Krueppel-like factor 10; transforming growth facto	3e-05
2epa_A	72	Krueppel-like factor 10; transforming growth facto	2e-04
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	4e-07
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-05
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	1e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	5e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	4e-06
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	1e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	1e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-04
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	6e-06
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	9e-06
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	7e-06
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	5e-04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	8e-06
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	5e-05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-05
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	3e-05
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	5e-05
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	6e-05
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	7e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-04
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	4e-04
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	8e-04
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	2e-04
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	2e-04
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	2e-04
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	2e-04
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-04
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	4e-04
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	7e-04

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 94.6 bits (236), Expect = 9e-24
 Identities = 58/202 (28%), Positives = 85/202 (42%), Gaps = 25/202 (12%)

Query: 77  HLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTT 136
                   + + C     +   C   +    KL  H+  H  +K  +PC ++ C K FT+
Sbjct: 3   EKALPVVYKRYIC-----SFADCGAAYNKNWKLQAHLCKHTGEKP-FPCKEEGCEKGFTS 56

Query: 137 LSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV-----SAPYMCDYK 189
           L +L  H + H G K  T  C+  GC  +F T      ++K+H N         Y+C ++
Sbjct: 57  LHHLTRHSLTHTGEKNFT--CDSDGCDLRFTT----KANMKKHFNRFHNIKICVYVCHFE 110

Query: 190 GCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCT 247
            CGK+F     LK HQ  H T      C   GC K+F +P RL+ H K VH      K  
Sbjct: 111 NCGKAFKKHNQLKVHQFSH-TQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKD- 167

Query: 248 YDGCKLLFSTKSALKRHNKSKH 269
            D C  +  T +   +H    H
Sbjct: 168 -DSCSFVGKTWTLYLKHVAECH 188

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 79.6 bits (197), Expect = 4e-18
 Identities = 53/167 (31%), Positives = 72/167 (43%), Gaps = 10/167 (5%)

Query: 75  KIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRF 134
           + HL KH  ++PF C         C  GF S H L RH  +H  +K  + CD   C+ RF
Sbjct: 31  QAHLCKHTGEKPFPC-----KEEGCEKGFTSLHHLTRHSLTHTGEKN-FTCDSDGCDLRF 84

Query: 135 TTLSNLKMHMVRH--GKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCG 192
           TT +N+K H  R    K     C    CG+ F+   Q   H   H+    PY C ++GC 
Sbjct: 85  TTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ-QLPYECPHEGCD 143

Query: 193 KSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHE 239
           K F L + LK H++VH           C    K      +H    H+
Sbjct: 144 KRFSLPSRLKRHEKVH-AGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 68.0 bits (167), Expect = 5e-14
 Identities = 37/170 (21%), Positives = 58/170 (34%), Gaps = 38/170 (22%)

Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV 180
           K Y C   +C   +     L+ H+ +H    T        G K                 
Sbjct: 11  KRYICSFADCGAAYNKNWKLQAHLCKH----T--------GEK----------------- 41

Query: 181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVH 238
             P+ C  +GC K F  +  L  H   H T  ++  C   GC  +F     +++H+    
Sbjct: 42  --PFPCKEEGCEKGFTSLHHLTRHSLTH-TGEKNFTCDSDGCDLRFTTKANMKKHFN-RF 97

Query: 239 --ESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
                  + C ++ C   F   + LK H +  H     + CP   C K F
Sbjct: 98  HNIKICVYVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRF 146

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 87.3 bits (217), Expect = 2e-21
 Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 16/156 (10%)

Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRHG-----KPLTLCCEELGCGRKFQTMKQYSTHLK 175
                D   C++ F +   L  H+         K     C   GC R+ +  K     L 
Sbjct: 2   TDCRWDG--CSQEFDSQEQLVHHINSEHIHGERKEFV--CHWGGCSRELRPFKAQY-MLV 56

Query: 176 EHSNVSA---PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRL 230
            H        P+ C ++GC KS+  + +LK+H R H T  +  +C+  GC K F      
Sbjct: 57  VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH-TGEKPYMCEHEGCSKAFSNASDR 115

Query: 231 REHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNK 266
            +H    H + K + C   GC   ++  S+L++H K
Sbjct: 116 AKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 79.9 bits (198), Expect = 1e-18
 Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 17/135 (12%)

Query: 81  HFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH-DEDKKCYPCDQKNCNKRFTTLSN 139
           H +++ F C       +  +  F +++ L+ HM  H  E  K + C  + C K ++ L N
Sbjct: 29  HGERKEFVCH--WGGCSRELRPFKAQYMLVVHMRRHTGE--KPHKCTFEGCRKSYSRLEN 84

Query: 140 LKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSN----VSAPYMCDYKGCGK 193
           LK H+  H G KP    CE  GC + F      ++   +H N       PY+C   GC K
Sbjct: 85  LKTHLRSHTGEKPYM--CEHEGCSKAFSN----ASDRAKHQNRTHSNEKPYVCKLPGCTK 138

Query: 194 SFYLMASLKSHQRVH 208
            +   +SL+ H +  
Sbjct: 139 RYTDPSSLRKHVKTV 153

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 75.7 bits (187), Expect = 4e-17
 Identities = 52/164 (31%), Positives = 76/164 (46%), Gaps = 21/164 (12%)

Query: 85  RPFKCKLTTANNTPCMWGFFSKHKLLRHMTS---HDEDK--KCYPCDQKNCNKRFTTLSN 139
              +          C   F S+ +L+ H+ S   H E K   C+        + F     
Sbjct: 2   TDCRWD-------GCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYM 54

Query: 140 LKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYL 197
           L +HM RH G KP    C   GC + +  ++   THL+ H+    PYMC+++GC K+F  
Sbjct: 55  LVVHMRRHTGEKPHK--CTFEGCRKSYSRLENLKTHLRSHTG-EKPYMCEHEGCSKAFSN 111

Query: 198 MASLKSHQ-RVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVH 238
            +    HQ R H +N +  VCK  GC K++  P  LR+H K VH
Sbjct: 112 ASDRAKHQNRTH-SNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 58.4 bits (142), Expect = 7e-11
 Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 13/112 (11%)

Query: 183 PYMCDYKGCGKSFYLMASLKSH---QRVHVTNPEDLVCKGCG-----KQFKVPCRLREHY 234
                  GC + F     L  H   + +H    ++ VC   G     + FK    L  H 
Sbjct: 3   DCRW--DGCSQEFDSQEQLVHHINSEHIH-GERKEFVCHWGGCSRELRPFKAQYMLVVHM 59

Query: 235 KAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
           +  H   K  KCT++GC+  +S    LK H +S H   + + C    C K+F
Sbjct: 60  R-RHTGEKPHKCTFEGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSKAF 109

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 76.0 bits (188), Expect = 2e-17
 Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 15/121 (12%)

Query: 119 DKKCYPCDQKNCNKRFTTLSNLKMHMVRHG-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 177
           + +   C  K C K F   S ++ H+  HG +     C E  CG+ F      S+ LK H
Sbjct: 2   EPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHV--CAE--CGKAFV----ESSKLKRH 53

Query: 178 SNV---SAPYMCDYKGCGKSFYLMASLKSHQRVHVT--NPEDLVCKGCGKQFKVPCRLRE 232
             V     P+ C ++GCGK F L  +L++H R+H T   P      GC K+F     L+ 
Sbjct: 54  QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH-TGDRPYVCPFDGCNKKFAQSTNLKS 112

Query: 233 H 233
           H
Sbjct: 113 H 113

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 70.6 bits (174), Expect = 2e-15
 Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 16/110 (14%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK 242
              C +KGC K F   ++++ H   H       VC  CGK F    +L+ H + VH   K
Sbjct: 5   TIACPHKGCTKMFRDNSAMRKHLHTHGPRV--HVCAECGKAFVESSKLKRH-QLVHTGEK 61

Query: 243 NFKCTYDGCKLLFSTKSALKRHNKSKHLNMRM------FPCPLVTCGKSF 286
            F+CT++GC   FS    L+ H       +R+      + CP   C K F
Sbjct: 62  PFQCTFEGCGKRFSLDFNLRTH-------VRIHTGDRPYVCPFDGCNKKF 104

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 66.0 bits (162), Expect = 7e-14
 Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 20/131 (15%)

Query: 83  DKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKM 142
           + R   C      +  C   F     + +H+ +H    + + C +  C K F   S LK 
Sbjct: 2   EPRTIAC-----PHKGCTKMFRDNSAMRKHLHTHGP--RVHVCAE--CGKAFVESSKLKR 52

Query: 143 HMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCGKSFYL 197
           H + H G KP    C   GCG++F        +L+ H  +     PY+C + GC K F  
Sbjct: 53  HQLVHTGEKPFQ--CTFEGCGKRFSL----DFNLRTHVRIHTGDRPYVCPFDGCNKKFAQ 106

Query: 198 MASLKSHQRVH 208
             +LKSH   H
Sbjct: 107 STNLKSHILTH 117

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 74.9 bits (185), Expect = 4e-17
 Identities = 43/144 (29%), Positives = 59/144 (40%), Gaps = 33/144 (22%)

Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV 180
           + + C    CNKR+  LS+L+MH  +H    T        G K                 
Sbjct: 5   RPFMCAYPGCNKRYFKLSHLQMHSRKH----T--------GEK----------------- 35

Query: 181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHES 240
             PY CD+K C + F     LK HQR H T  +   CK C ++F     L+ H +  H  
Sbjct: 36  --PYQCDFKDCERRFSRSDQLKRHQRRH-TGVKPFQCKTCQRKFSRSDHLKTHTR-THTG 91

Query: 241 TKNFKCTYDGCKLLFSTKSALKRH 264
            K F C +  C+  F+    L RH
Sbjct: 92  EKPFSCRWPSCQKKFARSDELVRH 115

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 72.2 bits (178), Expect = 3e-16
 Identities = 43/129 (33%), Positives = 53/129 (41%), Gaps = 19/129 (14%)

Query: 85  RPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 144
           RPF C         C   +F    L  H   H  +K  Y CD K+C +RF+    LK H 
Sbjct: 5   RPFMC-----AYPGCNKRYFKLSHLQMHSRKHTGEKP-YQCDFKDCERRFSRSDQLKRHQ 58

Query: 145 VRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCGKSFYLMA 199
            RH G KP    C+   C RKF      S HLK H+       P+ C +  C K F    
Sbjct: 59  RRHTGVKPFQ--CKT--CQRKFSR----SDHLKTHTRTHTGEKPFSCRWPSCQKKFARSD 110

Query: 200 SLKSHQRVH 208
            L  H  +H
Sbjct: 111 ELVRHHNMH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 56.4 bits (137), Expect = 2e-10
 Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 19/112 (16%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVT--NPEDLVCKGCGKQFKVPCRLREHYKAVHES 240
           P+MC Y GC K ++ ++ L+ H R H T   P     K C ++F    +L+ H +  H  
Sbjct: 6   PFMCAYPGCNKRYFKLSHLQMHSRKH-TGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTG 63

Query: 241 TKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRM------FPCPLVTCGKSF 286
            K F+C    C+  FS    LK H        R       F C   +C K F
Sbjct: 64  VKPFQCKT--CQRKFSRSDHLKTH-------TRTHTGEKPFSCRWPSCQKKF 106

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 70.0 bits (172), Expect = 5e-15
 Identities = 35/157 (22%), Positives = 54/157 (34%), Gaps = 24/157 (15%)

Query: 63  NCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH------ 116
           +   +   +            +     K        C   F + H+L+ H+T        
Sbjct: 2   SSGSSGQPIKQELSCKWIDEAQLSRPKK-------SCDRTFSTMHELVTHVTMEHVGGPE 54

Query: 117 DEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHL 174
             +  CY  +     K F     L  H+  H G KP    C   GCG+ F      S +L
Sbjct: 55  QNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFP--CPFPGCGKIFAR----SENL 108

Query: 175 KEHSNV---SAPYMCDYKGCGKSFYLMASLKSHQRVH 208
           K H        P+ C+++GC + F   +  K H  VH
Sbjct: 109 KIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 69.6 bits (171), Expect = 6e-15
 Identities = 33/135 (24%), Positives = 48/135 (35%), Gaps = 13/135 (9%)

Query: 160 CGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH--------VTN 211
            G   Q +KQ  +                K C ++F  M  L +H  +            
Sbjct: 3   SGSSGQPIKQELSCKWIDEA-QLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHV 59

Query: 212 PEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLN 271
                C   GK FK   +L  H + VH   K F C + GC  +F+    LK H ++ H  
Sbjct: 60  CYWEECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRT-HTG 117

Query: 272 MRMFPCPLVTCGKSF 286
            + F C    C + F
Sbjct: 118 EKPFKCEFEGCDRRF 132

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 39/169 (23%), Positives = 59/169 (34%), Gaps = 45/169 (26%)

Query: 105 SKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH--GKP--LTLCCEELGC 160
              + L      +         +K+C++ F+T+  L  H+     G P      C    C
Sbjct: 9   PIKQELSCKWIDEAQL---SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEEC 65

Query: 161 GRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVC 217
            R+ ++ K     L  H  V     P+ C + GCGK F    +LK H+R H         
Sbjct: 66  PREGKSFKA-KYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH--------- 115

Query: 218 KGCGKQFKVPCRLREHYKAVHEST--KNFKCTYDGCKLLFSTKSALKRH 264
                                  T  K FKC ++GC   F+  S  K+H
Sbjct: 116 -----------------------TGEKPFKCEFEGCDRRFANSSDRKKH 141

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 60.3 bits (147), Expect = 3e-12
 Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 184 YMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHEST 241
           Y+C ++ CGK+F     LK HQ  H T      C   GC K+F +P RL+ H K VH   
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSH-TQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGY 59

Query: 242 KNFKCTYDGCKLLFSTKSALKRHNKSKH 269
              K   D C  +  T +   +H    H
Sbjct: 60  PCKKD--DSCSFVGKTWTLYLKHVAECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 56.9 bits (138), Expect = 6e-11
 Identities = 28/116 (24%), Positives = 37/116 (31%), Gaps = 32/116 (27%)

Query: 123 YPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA 182
           Y C  +NC K F   + LK+H   H                        T          
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSH------------------------TQQL------- 30

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH 238
           PY C ++GC K F L + LK H++VH           C    K      +H    H
Sbjct: 31  PYECPHEGCDKRFSLPSRLKRHEKVH-AGYPCKKDDSCSFVGKTWTLYLKHVAECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 22/91 (24%), Positives = 29/91 (31%), Gaps = 11/91 (12%)

Query: 59  CPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDE 118
           C   NC       N  K+H   H  + P++C      +  C   F    +L RH   H  
Sbjct: 4   CHFENCGKAFKKHNQLKVHQFSHTQQLPYEC-----PHEGCDKRFSLPSRLKRHEKVHAG 58

Query: 119 DK--KCYPCDQKNCNKRFTTLSNLKMHMVRH 147
               K   C      K +T    LK     H
Sbjct: 59  YPCKKDDSCSF--VGKTWTLY--LKHVAECH 85

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 58.2 bits (142), Expect = 2e-11
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 15/93 (16%)

Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHS 178
           + Y C  ++C++RF+   +L  H+  H G KP    C    C R F      S HL  H 
Sbjct: 3   RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQ--CRI--CMRNF----SRSDHLTTHI 54

Query: 179 NV---SAPYMCDYKGCGKSFYLMASLKSHQRVH 208
                  P+ CD   CG+ F      K H ++H
Sbjct: 55  RTHTGEKPFACDI--CGRKFARSDERKRHTKIH 85

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 54.0 bits (131), Expect = 7e-10
 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK 242
           PY C  + C + F    SL  H R+H T  +   C+ C + F     L  H +  H   K
Sbjct: 4   PYACPVESCDRRFSQSGSLTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIR-THTGEK 61

Query: 243 NFKCTYDGCKLLFSTKSALKRH 264
            F C    C   F+     KRH
Sbjct: 62  PFACDI--CGRKFARSDERKRH 81

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 120 KKCYPCDQKNCNKRFTTLSNLKMHMVRHG--KPLTLCCEELGCGRKFQTMKQYSTHLKEH 177
           ++ + CD   C K +T  S+LK H+  H   KP    C   GC  +F    + + H ++H
Sbjct: 13  RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYK--CTWEGCDWRFARSDELTRHYRKH 70

Query: 178 SNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 208
           +    P+ C    C +SF     L  H + H
Sbjct: 71  TGAK-PFQCGV--CNRSFSRSDHLALHMKRH 98

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 44  SSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGF 103
           S + G + +K+++  C    C       +  K HL  H  ++P+KC         C W F
Sbjct: 3   SGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKC-----TWEGCDWRF 57

Query: 104 FSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 147
               +L RH   H   K  + C    CN+ F+   +L +HM RH
Sbjct: 58  ARSDELTRHYRKHTGAKP-FQCGV--CNRSFSRSDHLALHMKRH 98

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 48.8 bits (117), Expect = 7e-08
 Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVC--KGCGKQFKVPCRLREHYKAVHES 240
            + CDY GC K +   + LK+H R H T  +   C  +GC  +F     L  HY+  H  
Sbjct: 15  IHYCDYPGCTKVYTKSSHLKAHLRTH-TGEKPYKCTWEGCDWRFARSDELTRHYR-KHTG 72

Query: 241 TKNFKCTYDGCKLLFSTKSALKRHNK 266
            K F+C    C   FS    L  H K
Sbjct: 73  AKPFQC--GVCNRSFSRSDHLALHMK 96

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 55.2 bits (134), Expect = 2e-10
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 120 KKCYPCDQKNCNKRFTTLSNLKMHMVRHG--KPLTLCCEELGCGRKFQTMKQYSTHLKEH 177
              + CD   C K +T  S+LK H+  H   KP    C+  GCG KF    + + H ++H
Sbjct: 3   TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYH--CDWDGCGWKFARSDELTRHYRKH 60

Query: 178 SNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 208
           +    P+ C    C ++F     L  H + H
Sbjct: 61  TGHR-PFQCQK--CDRAFSRSDHLALHMKRH 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 46.4 bits (111), Expect = 4e-07
 Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHES 240
            + CDY GCGK++   + LK+H R H T  +   C   GCG +F     L  HY+  H  
Sbjct: 5   THTCDYAGCGKTYTKSSHLKAHLRTH-TGEKPYHCDWDGCGWKFARSDELTRHYR-KHTG 62

Query: 241 TKNFKCTYDGCKLLFSTKSALKRHNK 266
            + F+C    C   FS    L  H K
Sbjct: 63  HRPFQCQK--CDRAFSRSDHLALHMK 86

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 59  CPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDE 118
           C    C  T    +  K HL  H  ++P+ C     +   C W F    +L RH   H  
Sbjct: 8   CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHC-----DWDGCGWKFARSDELTRHYRKHTG 62

Query: 119 DKKCYPCDQKNCNKRFTTLSNLKMHMVRH 147
            +  + C +  C++ F+   +L +HM RH
Sbjct: 63  HRP-FQCQK--CDRAFSRSDHLALHMKRH 88

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 54.8 bits (133), Expect = 7e-10
 Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 21/126 (16%)

Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRHG--KPLTLCCEELGCGRKFQTMKQYSTHLKEHS 178
               C    C+K+F +   LK+H  +H   KP    C +  CG+ +        +L EH 
Sbjct: 6   SGVECPT--CHKKFLSKYYLKVHNRKHTGEKPFE--CPK--CGKCYF----RKENLLEHE 55

Query: 179 NVSA------PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLRE 232
             +        + C    C ++F     L+ H   H T      C  C +QF     L+ 
Sbjct: 56  ARNCMNRSEQVFTC--SVCQETFRRRMELRLHMVSH-TGEMPYKCSSCSQQFMQKKDLQS 112

Query: 233 HYKAVH 238
           H   +H
Sbjct: 113 HMIKLH 118

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 48.3 bits (116), Expect = 2e-07
 Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 10/106 (9%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREH--YKAVHES 240
              C    C K F     LK H R H T  +   C  CGK +     L EH     ++ S
Sbjct: 7   GVEC--PTCHKKFLSKYYLKVHNRKH-TGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63

Query: 241 TKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
            + F C+   C+  F  +  L+ H  S H     + C   +C + F
Sbjct: 64  EQVFTCSV--CQETFRRRMELRLHMVS-HTGEMPYKCS--SCSQQF 104

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 41.7 bits (99), Expect = 3e-05
 Identities = 31/130 (23%), Positives = 47/130 (36%), Gaps = 23/130 (17%)

Query: 85  RPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 144
              +C         C   F SK+ L  H   H  +K  + C +  C K +    NL  H 
Sbjct: 6   SGVECP-------TCHKKFLSKYYLKVHNRKHTGEKP-FECPK--CGKCYFRKENLLEHE 55

Query: 145 VRHG-----KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMA 199
            R+      +  T  C    C   F+   +   H+  H+    PY C    C + F    
Sbjct: 56  ARNCMNRSEQVFT--CSV--CQETFRRRMELRLHMVSHTG-EMPYKC--SSCSQQFMQKK 108

Query: 200 SLKSHQ-RVH 208
            L+SH  ++H
Sbjct: 109 DLQSHMIKLH 118

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 53.3 bits (129), Expect = 1e-09
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 14/81 (17%)

Query: 121 KCYPCDQKNCNKRFTTLSNLKMHM-VRHG--KPLTLCCEELGCGRKFQTMKQYSTHLKEH 177
              PCD   C + F+    L  H   +H   K  +  C E  CG+ F     +  HLKEH
Sbjct: 6   SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFS--CPEPACGKSF----NFKKHLKEH 59

Query: 178 SNV---SAPYMCDYKGCGKSF 195
             +   +  Y+C++   G S 
Sbjct: 60  MKLHSDTRDYICEF--SGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 47.2 bits (113), Expect = 1e-07
 Identities = 24/104 (23%), Positives = 32/104 (30%), Gaps = 32/104 (30%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK 242
              CD+ GCG+ F     L  H++                               H   K
Sbjct: 7   GMPCDFPGCGRIFSNRQYLNHHKKY-----------------------------QHIHQK 37

Query: 243 NFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
           +F C    C   F+ K  LK H K  H + R + C     G S 
Sbjct: 38  SFSCPEPACGKSFNFKKHLKEHMKL-HSDTRDYICE--FSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 42.2 bits (100), Expect = 9e-06
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 238 HESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
              +    C + GC  +FS +  L  H K +H++ + F CP   CGKSF
Sbjct: 2   SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSF 50

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 18/82 (21%), Positives = 25/82 (30%), Gaps = 11/82 (13%)

Query: 85  RPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 144
               C         C   F ++  L  H       +K + C +  C K F    +LK HM
Sbjct: 6   SGMPCDFPG-----CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60

Query: 145 VRHG--KPLTLCCEELGCGRKF 164
             H   +     CE    G   
Sbjct: 61  KLHSDTRDYI--CEF--SGPSS 78

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 55.5 bits (135), Expect = 1e-09
 Identities = 58/184 (31%), Positives = 74/184 (40%), Gaps = 29/184 (15%)

Query: 86  PFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMV 145
           P+ C         C   F     L  H  +H  +K  Y C +  C K F+   +L  H  
Sbjct: 21  PYACP-------ECGKSFSRSDHLAEHQRTHTGEKP-YKCPE--CGKSFSDKKDLTRHQR 70

Query: 146 RH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCGKSFYLMAS 200
            H G KP    C E  CG+ F        +L+ H        PY C    CGKSF  +A 
Sbjct: 71  THTGEKPYK--CPE--CGKSFS----QRANLRAHQRTHTGEKPYAC--PECGKSFSQLAH 120

Query: 201 LKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSA 260
           L++HQR H T  +   C  CGK F     L  H +  H   K +KC    C   FS + A
Sbjct: 121 LRAHQRTH-TGEKPYKCPECGKSFSREDNLHTHQR-THTGEKPYKCPE--CGKSFSRRDA 176

Query: 261 LKRH 264
           L  H
Sbjct: 177 LNVH 180

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 48.6 bits (117), Expect = 4e-07
 Identities = 44/136 (32%), Positives = 51/136 (37%), Gaps = 19/136 (13%)

Query: 134 FTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDY 188
               S+         G KP    C E  CG+ F      S HL EH        PY C  
Sbjct: 3   EFGSSSSVAQAALEPGEKPYA--CPE--CGKSFS----RSDHLAEHQRTHTGEKPYKC-- 52

Query: 189 KGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY 248
             CGKSF     L  HQR H T  +   C  CGK F     LR H +  H   K + C  
Sbjct: 53  PECGKSFSDKKDLTRHQRTH-TGEKPYKCPECGKSFSQRANLRAHQR-THTGEKPYACPE 110

Query: 249 DGCKLLFSTKSALKRH 264
             C   FS  + L+ H
Sbjct: 111 --CGKSFSQLAHLRAH 124

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 43.2 bits (103), Expect = 2e-05
 Identities = 41/129 (31%), Positives = 54/129 (41%), Gaps = 25/129 (19%)

Query: 85  RPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 144
           +P+KC         C   F  +  L  H  +H  +K  Y C +  C K F+ L++L+ H 
Sbjct: 76  KPYKCP-------ECGKSFSQRANLRAHQRTHTGEKP-YACPE--CGKSFSQLAHLRAHQ 125

Query: 145 VRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA---PYMCDYKGCGKSFYLMA 199
             H G KP    C E  CG+ F        +L  H        PY C    CGKSF    
Sbjct: 126 RTHTGEKPYK--CPE--CGKSFS----REDNLHTHQRTHTGEKPYKC--PECGKSFSRRD 175

Query: 200 SLKSHQRVH 208
           +L  HQR H
Sbjct: 176 ALNVHQRTH 184

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 50.6 bits (122), Expect = 1e-08
 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 8/89 (8%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH--ES 240
              C  + CGK F  +  L  H+  H +  +   C  CG +FK   R+  H    H    
Sbjct: 7   GVAC--EICGKIFRDVYHLNRHKLSH-SGEKPYSCPVCGLRFKRKDRMSYH-VRSHDGSV 62

Query: 241 TKNFKCTYDGCKLLFSTKSALKRHNKSKH 269
            K + C    C   FS    L  H K  H
Sbjct: 63  GKPYICQS--CGKGFSRPDHLNGHIKQVH 89

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 47.8 bits (114), Expect = 8e-08
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 11/75 (14%)

Query: 85  RPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDK--KCYPCDQKNCNKRFTTLSNLKM 142
              +C++       C +    K  L  H   H E      +PC+   C KRF    ++  
Sbjct: 6   SGLQCEI-------CGFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAA 56

Query: 143 HMVRHGKPLTLCCEE 157
           H  +    L L  +E
Sbjct: 57  HRSKSHPALLLAPQE 71

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDL--VCKGCGKQFKVPCRLREHYKAVHES 240
              C+   CG +    ASL  HQR H      L   C+ CGK+F+ P  +  H    H +
Sbjct: 7   GLQCEI--CGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64

Query: 241 TKNFKCTYDG 250
                    G
Sbjct: 65  LLLAPQESSG 74

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 13/102 (12%), Positives = 26/102 (25%), Gaps = 32/102 (31%)

Query: 123 YPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA 182
             C+   C       ++L  H  +H + +                               
Sbjct: 8   LQCEI--CGFTCRQKASLNWHQRKHAETV---------AAL------------------- 37

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQF 224
            + C++  CGK F    S+ +H+            +  G   
Sbjct: 38  RFPCEF--CGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSS 77

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 47.9 bits (115), Expect = 9e-08
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 19/95 (20%)

Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHS 178
           K + C    C + F+   +L  H+  H G KP    C+   CGRKF      S   K H 
Sbjct: 2   KPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFA--CDI--CGRKFAR----SDERKRHR 51

Query: 179 NV--SAPYMCDYKGCGKSFYLMASLKSHQ---RVH 208
           ++    P + D     +       L++     +  
Sbjct: 52  DIQHILPILEDK--VEELLSKNYHLENEVARLKKL 84

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 46.7 bits (112), Expect = 3e-07
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 7/84 (8%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK 242
           P+ C    C ++F     L +H R H T  +   C  CG++F      + H    H    
Sbjct: 3   PFQCRI--CMRNFSRSDHLTTHIRTH-TGEKPFACDICGRKFARSDERKRHRDIQHI--L 57

Query: 243 NFKCTYDGCKLLFSTKSALKRHNK 266
                    + L S    L+    
Sbjct: 58  PILEDK--VEELLSKNYHLENEVA 79

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 138 SNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA---PYMCDYKGCGKS 194
           S      +   +  +  C   GCG+ +      S+HLK H+       P+ C +KGC + 
Sbjct: 3   SGSSGPQIDSSRIRSHICSHPGCGKTYFK----SSHLKAHTRTHTGEKPFSCSWKGCERR 58

Query: 195 FYLMASLKSHQRVH 208
           F     L  H+R H
Sbjct: 59  FARSDELSRHRRTH 72

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 31/97 (31%)

Query: 168 KQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVP 227
              S    + S     ++C + GCGK+++  + LK+H R H                   
Sbjct: 3   SGSSGPQIDSSR-IRSHICSHPGCGKTYFKSSHLKAHTRTH------------------- 42

Query: 228 CRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRH 264
                      E  K F C++ GC+  F+    L RH
Sbjct: 43  ---------TGE--KPFSCSWKGCERRFARSDELSRH 68

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 238 HESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
               ++  C++ GC   +   S LK H +  H   + F C    C + F
Sbjct: 12  SSRIRSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFSCSWKGCERRF 59

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 46.3 bits (111), Expect = 4e-07
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 11/90 (12%)

Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHS 178
             + C+   C K F+    LK HM  H G KP    C+   C          + HL+ HS
Sbjct: 7   GPHKCEV--CGKCFSRKDKLKTHMRCHTGVKPYK--CKT--CDYAAADSSSLNKHLRIHS 60

Query: 179 NVSAPYMCDYKGCGKSFYLMASLKSHQRVH 208
           +   P+ C  + C  +    + L  H R H
Sbjct: 61  D-ERPFKC--QICPYASRNSSQLTVHLRSH 87

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 42.4 bits (101), Expect = 1e-05
 Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 13/95 (13%)

Query: 155 CEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCGKSFYLMASLKSHQRVHVTN 211
           CE   CG+ F         LK H        PY C  K C  +    +SL  H R+H ++
Sbjct: 11  CEV--CGKCFS----RKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIH-SD 61

Query: 212 PEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC 246
                C+ C    +   +L  H +  H        
Sbjct: 62  ERPFKCQICPYASRNSSQLTVHLR-SHTGDSGPSS 95

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 45.1 bits (108), Expect = 1e-06
 Identities = 29/115 (25%), Positives = 41/115 (35%), Gaps = 17/115 (14%)

Query: 138 SNLKMHMVRHG--KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCG 192
           S      +     K     C+   CGR F      S +L  H        PY C    C 
Sbjct: 3   SGSSGGRLPSKTKKEFI--CKF--CGRHFT----KSYNLLIHERTHTDERPYTC--DICH 52

Query: 193 KSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
           K+F     L+ H+ +H +  +   C+ CGK F     L  H K +H  T +    
Sbjct: 53  KAFRRQDHLRDHRYIH-SKEKPFKCQECGKGFCQSRTLAVH-KTLHMQTSSPTAA 105

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 34/99 (34%)

Query: 108 KLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTM 167
                  +H  +K  Y C    C+ RFT    +KMH+++                     
Sbjct: 2   SSGSSGRTHSGEKP-YECYI--CHARFTQSGTMKMHILQK-------------------- 38

Query: 168 KQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQR 206
                    H+   A + C +  C       + L  H R
Sbjct: 39  ---------HTENVAKFHCPH--CDTVIARKSDLGVHLR 66

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 42.9 bits (102), Expect = 4e-06
 Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 7/59 (11%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDL---VCKGCGKQFKVPCRLREHYKAVH 238
           PY C    C   F    ++K H     T  E++    C  C         L  H +  H
Sbjct: 15  PYECYI--CHARFTQSGTMKMHILQKHT--ENVAKFHCPHCDTVIARKSDLGVHLRKQH 69

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 42.5 bits (101), Expect = 5e-06
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 200 SLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH--ESTKNFKCTYDGCKLLFST 257
           S  S  R H +  +   C  C  +F     ++ H       E+   F C +  C  + + 
Sbjct: 2   SSGSSGRTH-SGEKPYECYICHARFTQSGTMKMH-ILQKHTENVAKFHCPH--CDTVIAR 57

Query: 258 KSALKRHNKSKH 269
           KS L  H + +H
Sbjct: 58  KSDLGVHLRKQH 69

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 40.2 bits (95), Expect = 4e-05
 Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 10/73 (13%)

Query: 73  TFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH-DEDKKCYPCDQKNCN 131
           +       H  ++P++C +       C   F     +  H+     E+   + C    C+
Sbjct: 2   SSGSSGRTHSGEKPYECYI-------CHARFTQSGTMKMHILQKHTENVAKFHCPH--CD 52

Query: 132 KRFTTLSNLKMHM 144
                 S+L +H+
Sbjct: 53  TVIARKSDLGVHL 65

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 133 RFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCG 192
               ++NL  ++V   +P    C    C R+F    + + H++ H+    P+ C    C 
Sbjct: 2   EPHPMNNLLNYVVPKMRPYA--CPVESCDRRFSRSDELTRHIRIHTGQK-PFQCRI--CM 56

Query: 193 KSFYLMASLKSHQRVH 208
           ++F     L +H R H
Sbjct: 57  RNFSRSDHLTTHIRTH 72

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 10/77 (12%)

Query: 71  LNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNC 130
           +N    +++     RP+ C         C   F    +L RH+  H   K  + C    C
Sbjct: 6   MNNLLNYVVPK--MRPYAC-----PVESCDRRFSRSDELTRHIRIHTGQKP-FQCRI--C 55

Query: 131 NKRFTTLSNLKMHMVRH 147
            + F+   +L  H+  H
Sbjct: 56  MRNFSRSDHLTTHIRTH 72

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 171 STHLKEHSNVSA-PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCR 229
             +L  +      PY C  + C + F     L  H R+H T  +   C+ C + F     
Sbjct: 6   MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIH-TGQKPFQCRICMRNFSRSDH 64

Query: 230 LREHYK 235
           L  H +
Sbjct: 65  LTTHIR 70

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 9/76 (11%)

Query: 105 SKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH--GKPLTLCCEELGCGR 162
             + LL ++       + Y C  ++C++RF+    L  H+  H   KP    C    C R
Sbjct: 5   PMNNLLNYVVPKM---RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ--CRI--CMR 57

Query: 163 KFQTMKQYSTHLKEHS 178
            F      +TH++ H+
Sbjct: 58  NFSRSDHLTTHIRTHT 73

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 43.2 bits (103), Expect = 6e-06
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 7/82 (8%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK 242
            Y C    CGKSF   +    H  +H        C  CGK+FK+   L  H K +H   K
Sbjct: 10  LYPCQ---CGKSFTHKSQRDRHMSMH-LGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIK 64

Query: 243 NFKCTYDGCKLLFSTKSALKRH 264
            ++C    C   F  + +  RH
Sbjct: 65  PYECNI--CAKRFMWRDSFHRH 84

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 42.8 bits (102), Expect = 9e-06
 Identities = 30/109 (27%), Positives = 38/109 (34%), Gaps = 21/109 (19%)

Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRHG--KPLTLCCEELGCGRKFQTMKQYSTHLKEHS 178
           K YPC    C K FT  S    HM  H   +P    C    CG+KF    +   HL  H 
Sbjct: 9   KLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYG--CGV--CGKKF----KMKHHLVGHM 57

Query: 179 NV---SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQF 224
            +     PY C    C K F    S   H+ V  +  +        +  
Sbjct: 58  KIHTGIKPYEC--NICAKRFMWRDSF--HRHVT-SCTKSYEAAKAEQNT 101

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 42.1 bits (100), Expect = 7e-06
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 171 STHLKEHSNVSA---PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVP 227
             H   HS+++    PY CD   C  SF    +L SH+ VH T  +   C  CG QF  P
Sbjct: 2   GHHHHHHSHMTHSDKPYKCDR--CQASFRYKGNLASHKTVH-TGEKPYRCNICGAQFNRP 58

Query: 228 CRLREH 233
             L+ H
Sbjct: 59  ANLKTH 64

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 37.0 bits (87), Expect = 5e-04
 Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 15/76 (19%)

Query: 138 SNLKMHMVRHG--KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA---PYMCDYKGCG 192
            +   H       KP    C+   C   F+    Y  +L  H  V     PY C    CG
Sbjct: 3   HHHHHHSHMTHSDKPYK--CDR--CQASFR----YKGNLASHKTVHTGEKPYRC--NICG 52

Query: 193 KSFYLMASLKSHQRVH 208
             F   A+LK+H R+H
Sbjct: 53  AQFNRPANLKTHTRIH 68

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 42.5 bits (101), Expect = 8e-06
 Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 33/116 (28%)

Query: 109 LLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMK 168
                 +H  +K  Y C    C+K F     L MH                         
Sbjct: 3   SGSSGRTHTGEKP-YACSH--CDKTFRQKQLLDMHF------------------------ 35

Query: 169 QYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQF 224
               +   +  V A ++C    CGK+F    ++  H       P+ +  +  G   
Sbjct: 36  --KRYHDPNF-VPAAFVC--SKCGKTFTRRNTMARHADNC-AGPDGVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 40.2 bits (95), Expect = 5e-05
 Identities = 15/68 (22%), Positives = 20/68 (29%), Gaps = 6/68 (8%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDL---VCKGCGKQFKVPCRLREHYKAVHE 239
           PY C    C K+F     L  H + +          VC  CGK F     +  H      
Sbjct: 15  PYAC--SHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD-NCA 71

Query: 240 STKNFKCT 247
                +  
Sbjct: 72  GPDGVEGE 79

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 35/88 (39%)

Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV 180
               C +  C+   ++ + L++H   H            C  +                 
Sbjct: 8   HPEKCSE--CSYSCSSKAALRIHERIH------------CTDR----------------- 36

Query: 181 SAPYMCDYKGCGKSFYLMASLKSHQRVH 208
             P+ C+Y  C       ++L  H +  
Sbjct: 37  --PFKCNY--CSFDTKQPSNLSKHMKKF 60

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYK 235
           P  C    C  S    A+L+ H+R+H        C  C    K P  L +H K
Sbjct: 9   PEKCSE--CSYSCSSKAALRIHERIH-CTDRPFKCNYCSFDTKQPSNLSKHMK 58

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 23/109 (21%), Positives = 32/109 (29%), Gaps = 9/109 (8%)

Query: 175 KEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHY 234
                    Y C    C      +    SH+R+        VC  C  +F  P   +EH 
Sbjct: 8   ASPVENKEVYQCRL--CNAKLSSLLEQGSHERLCRNA---AVCPYCSLRFFSPELKQEH- 61

Query: 235 KAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCG 283
                  K   C    C   F +  ++ RH    H    M P    + G
Sbjct: 62  -ESKCEYKKLTCLE--CMRTFKSSFSIWRHQVEVHNQNNMAPTSGPSSG 107

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 40.1 bits (95), Expect = 5e-05
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 17/91 (18%)

Query: 123 YPCDQKNCNKRFTTLSNLKMHMVRH--GKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV 180
           + C    C K F   S L  H++ H   +P    C+   CG++F       + +K+H+ +
Sbjct: 2   FDCKI--CGKSFKRSSTLSTHLLIHSDTRPYP--CQY--CGKRFH----QKSDMKKHTFI 51

Query: 181 ---SAPYMCDYKGCGKSFYLMASLKSHQRVH 208
                P+ C  + CGK+F   ++L +H R H
Sbjct: 52  HTGEKPHKC--QVCGKAFSQSSNLITHSRKH 80

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 39.7 bits (94), Expect = 6e-05
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 155 CEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPED 214
           C+   CG+ F+     STHL  HS+ + PY C Y  CGK F+  + +K H  +H T  + 
Sbjct: 4   CKI--CGKSFKRSSTLSTHLLIHSD-TRPYPCQY--CGKRFHQKSDMKKHTFIH-TGEKP 57

Query: 215 LVCKGCGKQFKVPCRLREH 233
             C+ CGK F     L  H
Sbjct: 58  HKCQVCGKAFSQSSNLITH 76

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 39.4 bits (93), Expect = 7e-05
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREH 233
           PY C    CGK+F   + L  HQRVH T  +   C  CGK F     L  H
Sbjct: 14  PYGC--VECGKAFSRSSILVQHQRVH-TGEKPYKCLECGKAFSQNSGLINH 61

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHV-TNPEDLVCKGCGKQFKVPCRLREHYKAVHE 239
            Y C    C + +  +++   H       N +   C  C K+F     +  H K +H+
Sbjct: 10  TYRCKV--CSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 33/86 (38%)

Query: 123 YPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA 182
           Y C    C++ +T +SN   H V                                 NV  
Sbjct: 11  YRCKV--CSRVYTHISNFCRHYVTS----------------------------HKRNVK- 39

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
            Y C +  C K F    ++ +H ++ 
Sbjct: 40  VYPCPF--CFKEFTRKDNMTAHVKII 63

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 36.4 bits (85), Expect = 8e-04
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 85  RPFKCKLTTANNTPCMWGFFSKHKLLRHM-TSHDEDKKCYPCDQKNCNKRFTTLSNLKMH 143
             ++CK+       C   +       RH  TSH  + K YPC    C K FT   N+  H
Sbjct: 9   HTYRCKV-------CSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAH 59

Query: 144 MVRH 147
           +   
Sbjct: 60  VKII 63

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)

Query: 112 HMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM--VRHGKPLTLCCEELGCGRKFQTMKQ 169
           + +      K + C    C+  + TL  L +HM    H +      +     R  +  K+
Sbjct: 10  YGSIFTGASK-FRCKD--CSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66

Query: 170 YSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSH 204
               ++   +      C Y  CG SF  +  L  H
Sbjct: 67  SLLEMEGKEDAQKVLKCMY--CGHSFESLQDLSVH 99

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 5/98 (5%)

Query: 138 SNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKG--CGKSF 195
           S+ K++           C++  C   + T+ + + H+ E  +                S 
Sbjct: 5   SSGKLYGSIFTGASKFRCKD--CSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62

Query: 196 YLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREH 233
               SL   +       + L C  CG  F+    L  H
Sbjct: 63  PRKRSLLEMEGKE-DAQKVLKCMYCGHSFESLQDLSVH 99

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH 238
            ++C+   C ++F     LK H R H TN +   C  C + F     L  H + +H
Sbjct: 2   SFVCEV--CTRAFARQEHLKRHYRSH-TNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 15/74 (20%), Positives = 20/74 (27%), Gaps = 7/74 (9%)

Query: 210 TNPEDLVCKGCGKQFKVPCRLREHYKAVH---ESTKNFKCTYDGCKLL---FSTKSALKR 263
                   K C + F     L  H    H       N  C ++ C      F  K  L  
Sbjct: 21  EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80

Query: 264 HNKSKHLNMRMFPC 277
           H +  H   +  P 
Sbjct: 81  HIRV-HTGEKSGPS 93

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREH 233
            Y CD   CGKSF   + L  H+R H T  +   C  CGK F     L  H
Sbjct: 18  RYKCDE--CGKSFSHSSDLSKHRRTH-TGEKPYKCDECGKAFIQRSHLIGH 65

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 36.5 bits (85), Expect = 4e-04
 Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 172 THLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 208
           +     +    P+ C + GCG  F     L  H+R H
Sbjct: 2   SSGSSGTG-EKPFACTWPGCGWRFSRSDELSRHRRSH 37

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens} Length = 37

 Score = 35.4 bits (82), Expect = 7e-04
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
            ++C  +GCGK +   + L++H R H
Sbjct: 8   QHICHIQGCGKVYGKTSHLRAHLRWH 33

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	292
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	100.0
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.96
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.95
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.92
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.92
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.91
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.91
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.91
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.9
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.9
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.89
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.89
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.89
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.82
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.82
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.82
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.8
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.79
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.79
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.79
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.79
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.78
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.77
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.77
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.76
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.75
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.75
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.75
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.75
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.75
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.73
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.72
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.71
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.71
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.7
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.7
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.7
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.67
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.66
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.65
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.65
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.65
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.65
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.64
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.63
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.62
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.61
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.61
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.61
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.6
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.59
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.57
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.56
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.56
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.56
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.54
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.53
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.53
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.52
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.51
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.51
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.5
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.49
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.49
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.48
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.48
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.46
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.46
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.45
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.43
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.43
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.42
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.41
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.41
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.4
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.39
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.38
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.36
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.34
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.31
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.31
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.27
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.23
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.23
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.23
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.22
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.22
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.22
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.22
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.22
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.22
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.22
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.22
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.22
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.22
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.22
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.22
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.21
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.21
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.21
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.21
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.21
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.21
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.21
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.21
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.21
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.2
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.2
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.2
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.2
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.2
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.2
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.2
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.19
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.19
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.19
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.19
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.19
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.19
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.19
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.18
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.18
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.18
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.18
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.18
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.18
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.18
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.18
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.18
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.18
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.18
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.18
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.17
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.17
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.17
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.17
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.17
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.17
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.17
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.17
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.17
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.16
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.16
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.16
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.15
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.15
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.15
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.15
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.14
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.14
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.14
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.13
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.13
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.13
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.13
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.13
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.12
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.12
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.12
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.12
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.12
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.12
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.12
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.12
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.11
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.11
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.11
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.11
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.11
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.1
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.1
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.1
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.1
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.1
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.1
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.1
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.09
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.09
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.09
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.09
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.09
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.09
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.09
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.09
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.08
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.08
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.08
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.08
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.08
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.07
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.07
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.07
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.07
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.07
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.07
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.07
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.07
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.07
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.06
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.06
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.06
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.06
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.05
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.04
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.04
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.04
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.04
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.04
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.04
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.03
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.03
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.02
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.02
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.02
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.02
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.02
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.02
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.02
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.01
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.01
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.01
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.0
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.0
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.0
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.99
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.99
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.98
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.95
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.94
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.93
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.88
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.88
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.87
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.85
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.83
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.8
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.79
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.74
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.72
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.72
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.71
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.69
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.65
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.65
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.65
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.65
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.64
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.6
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.59
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.55
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.51
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.49
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.49
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.49
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.48
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.48
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.47
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.47
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.47
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.46
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.45
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.44
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.43
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.42
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.42
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.4
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.37
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.37
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.36
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.34
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.32
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.31
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.3
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.26
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.26
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.25
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.23
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.23
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.22
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.22
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.2
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.2
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.19
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.17
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.17
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.16
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.16
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.15
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.15
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.15
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.14
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.14
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.13
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.12
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.11
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.11
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.1
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.09
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.09
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.36
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.07
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.07
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.07
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.06
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.06
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.31
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.04
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.03
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.29
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.29
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.01
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.16
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.05
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.8
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.74
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.65
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.41
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.33
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.08
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.86
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.61
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	95.18
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.03
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	94.66
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	94.37
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.22
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	85.7
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	83.89
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	83.3

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=4.4e-40  Score=260.69  Aligned_cols=185  Identities=30%  Similarity=0.600  Sum_probs=145.4

Q ss_pred             hHHHHhHHhhccCCCccccccCCCCcccccccccchHHHHHhHhhcCCCCCCccCCCcccchhcCChHHHHHHHHhcCCC
Q psy11068         71 LNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKP  150 (292)
Q Consensus        71 ~~~l~~H~~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~c~c~~C~~~f~~~~~l~~H~~~h~~~  150 (292)
                      ...|..|+..|.++++|.|++       |++.|.+...|..|++.|.+. ++|.|+  .|++.|.+...|..|++.|.++
T Consensus         6 ~~~l~~h~~~~~~~~~~~C~~-------C~~~f~~~~~l~~H~~~h~~~-~~~~C~--~C~~~f~~~~~l~~H~~~h~~~   75 (190)
T 2i13_A            6 SSSSVAQAALEPGEKPYACPE-------CGKSFSRSDHLAEHQRTHTGE-KPYKCP--ECGKSFSDKKDLTRHQRTHTGE   75 (190)
T ss_dssp             --------------------------------CCSSHHHHHGGGCC----CCEECT--TTCCEESSHHHHHHHHHHHHCC
T ss_pred             hccchhhhhhcCCCCCCcCCC-------CccccCCHHHHHHHHHHcCCC-CCccCC--CcCchhCCHHHHHHHHHhcCCC
Confidence            356888999999999999999       999999999999999999988 778888  8999999999999999999999


Q ss_pred             CcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHH
Q psy11068        151 LTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRL  230 (292)
Q Consensus       151 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L  230 (292)
                      ++|.|..  |++.|.+...|..|++.|.+ +++|.|..  |++.|.+...|..|+++| .++++|.|++|++.|.....|
T Consensus        76 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~-~~~~~C~~--C~~~f~~~~~l~~H~~~h-~~~~~~~C~~C~~~f~~~~~L  149 (190)
T 2i13_A           76 KPYKCPE--CGKSFSQRANLRAHQRTHTG-EKPYACPE--CGKSFSQLAHLRAHQRTH-TGEKPYKCPECGKSFSREDNL  149 (190)
T ss_dssp             CCEECTT--TCCEESCHHHHHHHHHHHHT-CCCEECTT--TCCEESSHHHHHHHHHHH-HCCCCEECTTTCCEESCHHHH
T ss_pred             CCccCcc--cCCccCCHHHHHHHHHhcCC-CCCCcCCC--CCCccCCHHHHHHHHHHh-CCCCCeECCCCCcccCCHHHH
Confidence            9999999  99999999999999999997 89999988  999999999999999999 567899999999999999999


Q ss_pred             HHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcC
Q psy11068        231 REHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMF  275 (292)
Q Consensus       231 ~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~  275 (292)
                      ..|++ +|.+++||.|++  |++.|.+...|..|++ .|.+++||
T Consensus       150 ~~H~~-~H~~~~~~~C~~--C~~~f~~~~~L~~H~~-~H~~~k~~  190 (190)
T 2i13_A          150 HTHQR-THTGEKPYKCPE--CGKSFSRRDALNVHQR-THTGKKTS  190 (190)
T ss_dssp             HHHHH-HHHCCCCEECTT--TCCEESSHHHHHHHHT-TC------
T ss_pred             HHHHH-hcCCCCCeECCC--CCCccCCHHHHHHHHH-hcCCCCCC
Confidence            99999 899999999988  9999999999999999 79999987

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=3.8e-37  Score=243.80  Aligned_cols=174  Identities=32%  Similarity=0.643  Sum_probs=146.0

Q ss_pred             CCCCcccccCCCCcccccChHHHHhHHhhccCCCccccccCCCCcccccccccchHHHHHhHhhcCCCCCCccCCCcccc
Q psy11068         52 KKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCN  131 (292)
Q Consensus        52 ~~~~~~~C~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~c~c~~C~  131 (292)
                      .+.++|.|++  |++.|.+...|..|++.|.++++|.|++       |++.|.+...|..|++.|.++ ++|.|+  .|+
T Consensus        17 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~-------C~~~f~~~~~l~~H~~~h~~~-~~~~C~--~C~   84 (190)
T 2i13_A           17 PGEKPYACPE--CGKSFSRSDHLAEHQRTHTGEKPYKCPE-------CGKSFSDKKDLTRHQRTHTGE-KPYKCP--ECG   84 (190)
T ss_dssp             ----------------CCSSHHHHHGGGCC---CCEECTT-------TCCEESSHHHHHHHHHHHHCC-CCEECT--TTC
T ss_pred             CCCCCCcCCC--CccccCCHHHHHHHHHHcCCCCCccCCC-------cCchhCCHHHHHHHHHhcCCC-CCccCc--ccC
Confidence            3456899996  9999999999999999999999999999       999999999999999999988 778888  899


Q ss_pred             hhcCChHHHHHHHHhcCCCCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCC
Q psy11068        132 KRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTN  211 (292)
Q Consensus       132 ~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~  211 (292)
                      +.|.+...|..|++.|.++++|.|..  |++.|.+...|..|++.|++ +++|.|..  |++.|.+...|..|+++| .+
T Consensus        85 ~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~-~~~~~C~~--C~~~f~~~~~L~~H~~~H-~~  158 (190)
T 2i13_A           85 KSFSQRANLRAHQRTHTGEKPYACPE--CGKSFSQLAHLRAHQRTHTG-EKPYKCPE--CGKSFSREDNLHTHQRTH-TG  158 (190)
T ss_dssp             CEESCHHHHHHHHHHHHTCCCEECTT--TCCEESSHHHHHHHHHHHHC-CCCEECTT--TCCEESCHHHHHHHHHHH-HC
T ss_pred             CccCCHHHHHHHHHhcCCCCCCcCCC--CCCccCCHHHHHHHHHHhCC-CCCeECCC--CCcccCCHHHHHHHHHhc-CC
Confidence            99999999999999999999999999  99999999999999999997 89999988  999999999999999999 56


Q ss_pred             CCCcccCCCcccccChhHHHHHHHHhcCCCCcc
Q psy11068        212 PEDLVCKGCGKQFKVPCRLREHYKAVHESTKNF  244 (292)
Q Consensus       212 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~  244 (292)
                      +++|.|++|++.|.....|..|++ +|.+++||
T Consensus       159 ~~~~~C~~C~~~f~~~~~L~~H~~-~H~~~k~~  190 (190)
T 2i13_A          159 EKPYKCPECGKSFSRRDALNVHQR-THTGKKTS  190 (190)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHT-TC------
T ss_pred             CCCeECCCCCCccCCHHHHHHHHH-hcCCCCCC
Confidence            789999999999999999999998 89999986

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=100.00  E-value=1.1e-33  Score=223.90  Aligned_cols=160  Identities=31%  Similarity=0.620  Sum_probs=110.4

Q ss_pred             ccccccchHHHHHhHhhcCCCCCCccCCCcccchhcCChHHHHHHHHhcCCCCccccc--ccccchhccChHHHHHHH-h
Q psy11068         99 CMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCE--ELGCGRKFQTMKQYSTHL-K  175 (292)
Q Consensus        99 C~~~f~~~~~l~~H~~~h~~~~~~~~c~c~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~~~C~~~f~~~~~l~~H~-~  175 (292)
                      |++.|.+...|..|++.|.++ ++|.|+++.|++.|.+...|..|+++|.++++|.|.  .  |++.|.+...|..|+ +
T Consensus        20 C~~~f~~~~~L~~H~~~h~~~-~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~--C~~~f~~~~~l~~H~~~   96 (190)
T 1tf6_A           20 CGAAYNKNWKLQAHLCKHTGE-KPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG--CDLRFTTKANMKKHFNR   96 (190)
T ss_dssp             TCCBCSSHHHHHHHHHHHHCC-CSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSS--CCCEESCHHHHHHHHHT
T ss_pred             CcchhCCHHHHHHHHHhcCCC-CCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCC--CCCccCCHHHHHHHHHH
Confidence            666666666666666666655 456664346666666666666666666666667776  5  777777777777777 4


Q ss_pred             hhcCCCCceeC--CCCCCCcccCCHHHHHHHHHHhcCCCCCcccCC--CcccccChhHHHHHHHHhcCCCCcccCCcCC-
Q psy11068        176 EHSNVSAPYMC--DYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKG--CGKQFKVPCRLREHYKAVHESTKNFKCTYDG-  250 (292)
Q Consensus       176 ~h~~~~~~~~C--~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~-  250 (292)
                      .|...+++|.|  ..  |++.|.+...|..|+++| .++++|.|++  |++.|.+...|..|++ +|.+   |.|  .. 
T Consensus        97 ~h~~~~~~~~C~~~~--C~k~f~~~~~L~~H~~~H-~~~~~~~C~~~~C~k~F~~~~~L~~H~~-~H~~---~~C--~~~  167 (190)
T 1tf6_A           97 FHNIKICVYVCHFEN--CGKAFKKHNQLKVHQFSH-TQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAG---YPC--KKD  167 (190)
T ss_dssp             TSSTTTSCCEECSSS--SCEECSSHHHHHHHHGGG-SSSCSSBCCSSSCCCBCSSHHHHHHHHT-SSCS---CCC--CST
T ss_pred             hcCCCcceeeCCCCC--CccccCCHHHHHHHHHHh-CCCCCccCCCCCCCchhcCHHHHHHHHH-HhCC---CcC--CCC
Confidence            44333667777  65  888888888888888777 5567788876  8888888888888877 6766   667  34 


Q ss_pred             --ccccccCHHHHHhHhhhhcCC
Q psy11068        251 --CKLLFSTKSALKRHNKSKHLN  271 (292)
Q Consensus       251 --C~~~f~~~~~l~~H~~~~H~~  271 (292)
                        |++.|.+...|..|++ .|.+
T Consensus       168 ~~C~~~f~~~~~l~~H~~-~h~~  189 (190)
T 1tf6_A          168 DSCSFVGKTWTLYLKHVA-ECHQ  189 (190)
T ss_dssp             TTCCCCCSCHHHHHHHHT-TCC-
T ss_pred             CcCCCccccHHHHHHHHH-hhcC
Confidence              7888888888888877 4654

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=100.00  E-value=2.1e-33  Score=222.24  Aligned_cols=174  Identities=33%  Similarity=0.592  Sum_probs=155.4

Q ss_pred             CCCCcccccCCCCcccccChHHHHhHHhhccCCCcccc--ccCCCCcccccccccchHHHHHhHhhcCCCCCCccCCCcc
Q psy11068         52 KKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKC--KLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKN  129 (292)
Q Consensus        52 ~~~~~~~C~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C--~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~c~c~~  129 (292)
                      ...++|.|.+..|++.|.+...|..|++.|.++++|.|  .+       |++.|.+...|..|+++|.++ ++|.|.++.
T Consensus         8 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~-------C~~~f~~~~~l~~H~~~h~~~-~~~~C~~~~   79 (190)
T 1tf6_A            8 VVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEG-------CEKGFTSLHHLTRHSLTHTGE-KNFTCDSDG   79 (190)
T ss_dssp             --CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTT-------CCCCCSSHHHHHHHHTTTTTC-CCEECCSSS
T ss_pred             CCCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCC-------CChhhCCHHHHHHHHHHccCC-CceeCCCCC
Confidence            34568999533599999999999999999999999999  88       999999999999999999988 779998668


Q ss_pred             cchhcCChHHHHHHH-Hhc-CCCCcccc--cccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHH
Q psy11068        130 CNKRFTTLSNLKMHM-VRH-GKPLTLCC--EELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQ  205 (292)
Q Consensus       130 C~~~f~~~~~l~~H~-~~h-~~~~~~~C--~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~  205 (292)
                      |++.|.+...|..|+ +.| .+.++|.|  ..  |++.|.+...|..|++.|++ ++||.|..+.|++.|.+...|..|+
T Consensus        80 C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~--C~k~f~~~~~L~~H~~~H~~-~~~~~C~~~~C~k~F~~~~~L~~H~  156 (190)
T 1tf6_A           80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFEN--CGKAFKKHNQLKVHQFSHTQ-QLPYECPHEGCDKRFSLPSRLKRHE  156 (190)
T ss_dssp             CCCEESCHHHHHHHHHTTSSTTTSCCEECSSS--SCEECSSHHHHHHHHGGGSS-SCSSBCCSSSCCCBCSSHHHHHHHH
T ss_pred             CCCccCCHHHHHHHHHHhcCCCcceeeCCCCC--CccccCCHHHHHHHHHHhCC-CCCccCCCCCCCchhcCHHHHHHHH
Confidence            999999999999999 567 46789999  88  99999999999999999997 8999995334999999999999999


Q ss_pred             HHhcCCCCCcccCC---CcccccChhHHHHHHHHhcCCC
Q psy11068        206 RVHVTNPEDLVCKG---CGKQFKVPCRLREHYKAVHEST  241 (292)
Q Consensus       206 ~~h~~~~~~~~C~~---C~~~f~~~~~L~~H~~~~H~~~  241 (292)
                      ++|+ +   |.|..   |++.|.....|..|++ +|.++
T Consensus       157 ~~H~-~---~~C~~~~~C~~~f~~~~~l~~H~~-~h~~e  190 (190)
T 1tf6_A          157 KVHA-G---YPCKKDDSCSFVGKTWTLYLKHVA-ECHQD  190 (190)
T ss_dssp             TSSC-S---CCCCSTTTCCCCCSCHHHHHHHHT-TCC--
T ss_pred             HHhC-C---CcCCCCCcCCCccccHHHHHHHHH-hhcCC
Confidence            9984 4   99999   9999999999999998 77653

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.96  E-value=9e-29  Score=189.08  Aligned_cols=144  Identities=27%  Similarity=0.579  Sum_probs=113.2

Q ss_pred             cCCCcccchhcCChHHHHHHHH---hcCCCCcccccccc---cchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCC
Q psy11068        124 PCDQKNCNKRFTTLSNLKMHMV---RHGKPLTLCCEELG---CGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYL  197 (292)
Q Consensus       124 ~c~c~~C~~~f~~~~~l~~H~~---~h~~~~~~~C~~~~---C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~  197 (292)
                      .|.|+.|++.|.+...|..|++   +|.++++|.|.+.+   |++.|.+...|..|++.|.+ +++|.|.++.|++.|.+
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~-~~~~~C~~~~C~~~f~~   81 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG-EKPHKCTFEGCRKSYSR   81 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHC-CCCCCCCSTTCCCCCSS
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCC-CCCccCCCCCCCCcccC
Confidence            3444466666666666666665   45555666655311   45889999999999999887 78899974459999999


Q ss_pred             HHHHHHHHHHhcCCCCCcccCC--CcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcC
Q psy11068        198 MASLKSHQRVHVTNPEDLVCKG--CGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHL  270 (292)
Q Consensus       198 ~~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~  270 (292)
                      ...|..|+++| .++++|.|++  |++.|.+...|..|++.+|.+++||.|++++|++.|.+...|..|+++ |.
T Consensus        82 ~~~l~~H~~~h-~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~-hh  154 (155)
T 2gli_A           82 LENLKTHLRSH-TGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT-VH  154 (155)
T ss_dssp             HHHHHHHHHHT-TTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHH-SC
T ss_pred             HHHHHHHHHHc-CCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHh-hc
Confidence            99999999998 6678999998  999999999999998448999999999544599999999999999984 54

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.95  E-value=4.4e-28  Score=185.23  Aligned_cols=144  Identities=31%  Similarity=0.584  Sum_probs=113.8

Q ss_pred             CccccccCCCCcccccccccchHHHHHhHh---hcCCCCCCccCC---CcccchhcCChHHHHHHHHhcCCCCccccccc
Q psy11068         85 RPFKCKLTTANNTPCMWGFFSKHKLLRHMT---SHDEDKKCYPCD---QKNCNKRFTTLSNLKMHMVRHGKPLTLCCEEL  158 (292)
Q Consensus        85 ~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~---~h~~~~~~~~c~---c~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~  158 (292)
                      .+|.|+.       |++.|.+...|..|++   .|.+. ++|.|.   |..|++.|.+...|..|++.|.++++|.|.++
T Consensus         2 ~~~~C~~-------C~~~f~~~~~L~~H~~~~h~h~~~-~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~   73 (155)
T 2gli_A            2 TDCRWDG-------CSQEFDSQEQLVHHINSEHIHGER-KEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFE   73 (155)
T ss_dssp             CBCCBTT-------CCCBCSCHHHHHHHHHHHTSSSCS-SCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCST
T ss_pred             CcCCcCC-------CccccCCHHHHHHHHHhhccCCCC-cceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCC
Confidence            4566666       7777777777777776   45444 566665   55677888888888888888888888888733


Q ss_pred             ccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHH-HHhcCCCCCcccCC--CcccccChhHHHHHHH
Q psy11068        159 GCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQ-RVHVTNPEDLVCKG--CGKQFKVPCRLREHYK  235 (292)
Q Consensus       159 ~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~-~~h~~~~~~~~C~~--C~~~f~~~~~L~~H~~  235 (292)
                      .|++.|.+...|..|++.|.+ +++|.|.+++|++.|.+...|..|+ ++| .++++|.|++  |++.|.+...|..|++
T Consensus        74 ~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~~~C~~~f~~~~~L~~H~~~~H-~~~~~~~C~~~~C~~~f~~~~~L~~H~~  151 (155)
T 2gli_A           74 GCRKSYSRLENLKTHLRSHTG-EKPYMCEHEGCSKAFSNASDRAKHQNRTH-SNEKPYVCKLPGCTKRYTDPSSLRKHVK  151 (155)
T ss_dssp             TCCCCCSSHHHHHHHHHHTTT-CCCEECCSTTCCCEESSSSTTHHHHHHTT-CSCCCEECCSTTTCCEESSHHHHHHHHH
T ss_pred             CCCCcccCHHHHHHHHHHcCC-CCCeeCCCCCCCCccCCHHHHHHHHHHhc-CCCCCeeCCCCCCccccCCHHHHHHHHH
Confidence            388899888889999888887 7889997545999999999999998 566 7778899988  9999999999999988


Q ss_pred             HhcC
Q psy11068        236 AVHE  239 (292)
Q Consensus       236 ~~H~  239 (292)
                       +|.
T Consensus       152 -~hh  154 (155)
T 2gli_A          152 -TVH  154 (155)
T ss_dssp             -HSC
T ss_pred             -hhc
Confidence             554

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=4.9e-25  Score=161.77  Aligned_cols=118  Identities=24%  Similarity=0.499  Sum_probs=103.3

Q ss_pred             CCCCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHh--cCCCCCcccCCCccccc
Q psy11068        148 GKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH--VTNPEDLVCKGCGKQFK  225 (292)
Q Consensus       148 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h--~~~~~~~~C~~C~~~f~  225 (292)
                      .+.++|.|..  |++.|.+...|..|++.|.+ +++|.|..  |++.|.+...|..|+..+  +.++++|.|.+|++.|.
T Consensus         3 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~-~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~   77 (124)
T 2dlq_A            3 SGSSGVECPT--CHKKFLSKYYLKVHNRKHTG-EKPFECPK--CGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFR   77 (124)
T ss_dssp             CCCSSCCCTT--TCCCCSSHHHHHHHHHHHSS-CCSCBCTT--TCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEES
T ss_pred             CCCCCCCCCC--CCCcCCCHHHHHHHHHhCCC-CCCeECCC--CCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccC
Confidence            4567889998  99999999999999999887 78899987  999999999999999864  35678899999999999


Q ss_pred             ChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCC
Q psy11068        226 VPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMR  273 (292)
Q Consensus       226 ~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~  273 (292)
                      ....|..|++ +|.+++||.|++  |++.|.+...|..|++..|.++.
T Consensus        78 ~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~~  122 (124)
T 2dlq_A           78 RRMELRLHMV-SHTGEMPYKCSS--CSQQFMQKKDLQSHMIKLHSGPS  122 (124)
T ss_dssp             SHHHHHHHHH-HHSSSCSEECSS--SCCEESSHHHHHHHHHHTSSCSS
T ss_pred             CHHHHHHHHH-HcCCCCCccCCC--ccchhCCHHHHHHHHHHHCCCCC
Confidence            9999999988 899999999977  99999999999999986787764

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.92  E-value=6.8e-25  Score=159.82  Aligned_cols=116  Identities=30%  Similarity=0.687  Sum_probs=95.4

Q ss_pred             CCCCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccCh
Q psy11068        148 GKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVP  227 (292)
Q Consensus       148 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~  227 (292)
                      .++++|.|.+++|++.|.+...|..|++.|.+ +++|.|.++.|++.|.+...|..|+++| .++++|.|.+|++.|...
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~~C~~C~~~f~~~   79 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTG-EKPYQCDFKDCERRFSRSDQLKRHQRRH-TGVKPFQCKTCQRKFSRS   79 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHT-TCCEECCSTTCCCEESSHHHHHHHHHHH-HCCCCEECTTTCCEESCH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCC-CCCccCCCCCCcCccCCHHHHHHHHHHc-CCCCCccCCccCchhCCH
Confidence            45677888755588888888888888888886 7888887223888888888888888888 556788899999999888


Q ss_pred             hHHHHHHHHhcCCCCcccC--CcCCccccccCHHHHHhHhhhhc
Q psy11068        228 CRLREHYKAVHESTKNFKC--TYDGCKLLFSTKSALKRHNKSKH  269 (292)
Q Consensus       228 ~~L~~H~~~~H~~~~~~~C--~~~~C~~~f~~~~~l~~H~~~~H  269 (292)
                      ..|..|++ +|.++++|.|  +.  |++.|.+...|..|++ .|
T Consensus        80 ~~l~~H~~-~h~~~~~~~C~~~~--C~~~f~~~~~L~~H~~-~H  119 (119)
T 2jp9_A           80 DHLKTHTR-THTGEKPFSCRWPS--CQKKFARSDELVRHHN-MH  119 (119)
T ss_dssp             HHHHHHHH-HHHTCCCEECCSTT--CCCEESSHHHHHHHHH-TC
T ss_pred             HHHHHHHH-HhcCCCCeeCCCCC--CccccCCHHHHHHHHh-cC
Confidence            88999988 7888888988  66  9999999999998887 45

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.91  E-value=9.3e-25  Score=166.73  Aligned_cols=122  Identities=33%  Similarity=0.536  Sum_probs=101.8

Q ss_pred             CCCcccccccccchhccChHHHHHHHhh-hcCCCCc--------eeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCC
Q psy11068        149 KPLTLCCEELGCGRKFQTMKQYSTHLKE-HSNVSAP--------YMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKG  219 (292)
Q Consensus       149 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~--------~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  219 (292)
                      ....|.|..  |++.|.+...|..|++. |.+ ..+        |.|..  |++.|.+...|..|+++| .++++|.|.+
T Consensus        22 ~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~-~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h-~~~~~~~C~~   95 (155)
T 2rpc_A           22 AQLSRPKKS--CDRTFSTMHELVTHVTMEHVG-GPEQNNHVCYWEECPR--EGKSFKAKYKLVNHIRVH-TGEKPFPCPF   95 (155)
T ss_dssp             TCCSSSCCC--CCCCBSSHHHHHHHHHTTTSC-CTTCSSCCCCBTTCTT--SSCCCSSHHHHHHHTHHH-HCCCSEECSC
T ss_pred             hhccccccc--CCcccCCHHHHHHHHHhhcCC-CcccCCccccccCCCC--cccccCCHHHHHHHHHhc-CCCCcccCCc
Confidence            345667777  77777777777777766 433 332        78987  999999999999999998 5678999998


Q ss_pred             --CcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCC
Q psy11068        220 --CGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCP  278 (292)
Q Consensus       220 --C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  278 (292)
                        |++.|.....|..|++ +|.+++||.|.+++|++.|.+...|..|++ .|.+++||.|.
T Consensus        96 ~~C~~~f~~~~~L~~H~~-~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~k~~~c~  154 (155)
T 2rpc_A           96 PGCGKIFARSENLKIHKR-THTGEKPFKCEFEGCDRRFANSSDRKKHMH-VHTSDKSGPSS  154 (155)
T ss_dssp             TTTCCEESCHHHHHHHHT-TTCSSCSBCCSSTTCCCCBSSHHHHHHSST-TTTSCCCSCSC
T ss_pred             CCCCCccCCHHHHHHHHH-hhCCCCCccCCCCCCCCccCCHHHHHHHHH-HhcCCCCCCCC
Confidence              9999999999999988 899999999964359999999999999998 79999999985

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.91  E-value=6.2e-25  Score=161.28  Aligned_cols=119  Identities=33%  Similarity=0.680  Sum_probs=83.5

Q ss_pred             CCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCC--CcccccCh
Q psy11068        150 PLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKG--CGKQFKVP  227 (292)
Q Consensus       150 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~  227 (292)
                      +++|.|....|++.|.+...|..|++.| + +++|.|..  |++.|.+...|..|+++| .++++|.|..  |++.|...
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~-~~~~~C~~--C~~~f~~~~~l~~H~~~h-~~~~~~~C~~~~C~~~f~~~   77 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-G-PRVHVCAE--CGKAFVESSKLKRHQLVH-TGEKPFQCTFEGCGKRFSLD   77 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-S-CCCEECTT--TCCEESSHHHHHHHGGGT-SCCCCEECCSTTCCCEESCH
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-C-CCCeECCC--CCchhCCHHHHHHHHHHc-CCCCCeeCCCCCCcCccCCH
Confidence            4567777112777787777777787777 3 67788876  888888888888887777 5567788865  88888888


Q ss_pred             hHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcC
Q psy11068        228 CRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMF  275 (292)
Q Consensus       228 ~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~  275 (292)
                      ..|..|++ +|.++++|.|+++.|++.|.+...|..|++ .|.+++++
T Consensus        78 ~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~-~H~~~k~~  123 (124)
T 1ubd_C           78 FNLRTHVR-IHTGDRPYVCPFDGCNKKFAQSTNLKSHIL-THAKAKNN  123 (124)
T ss_dssp             HHHHHHHH-HHHCCCCCCCCSTTCCCCCSSTTTTHHHHH-HHC-----
T ss_pred             HHHHHHHH-HhCCCCceECCCCCCCCccCCHHHHHHHHH-HHcccccC
Confidence            88888877 777778888842238888888888888887 57777765

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.91  E-value=3.4e-24  Score=157.32  Aligned_cols=119  Identities=34%  Similarity=0.729  Sum_probs=98.0

Q ss_pred             CCccCCCcccchhcCChHHHHHHHHhcCCCCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHH
Q psy11068        121 KCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMAS  200 (292)
Q Consensus       121 ~~~~c~c~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~  200 (292)
                      ++|.|+++.|++.|.+...|..|+++| ++++|.|..  |++.|.+...|..|++.|.+ +++|.|.++.|++.|.+...
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~-~~~~~C~~~~C~~~f~~~~~   79 (124)
T 1ubd_C            4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAE--CGKAFVESSKLKRHQLVHTG-EKPFQCTFEGCGKRFSLDFN   79 (124)
T ss_dssp             -CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTT--TCCEESSHHHHHHHGGGTSC-CCCEECCSTTCCCEESCHHH
T ss_pred             CcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCC--CCchhCCHHHHHHHHHHcCC-CCCeeCCCCCCcCccCCHHH
Confidence            457787667999999999999999888 778899999  99999999999999999987 78899964459999999999


Q ss_pred             HHHHHHHhcCCCCCcccC--CCcccccChhHHHHHHHHhcCCCCccc
Q psy11068        201 LKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFK  245 (292)
Q Consensus       201 l~~H~~~h~~~~~~~~C~--~C~~~f~~~~~L~~H~~~~H~~~~~~~  245 (292)
                      |..|+++| .++++|.|+  .|++.|.+...|..|++ +|.++++++
T Consensus        80 l~~H~~~h-~~~~~~~C~~~~C~~~f~~~~~L~~H~~-~H~~~k~~q  124 (124)
T 1ubd_C           80 LRTHVRIH-TGDRPYVCPFDGCNKKFAQSTNLKSHIL-THAKAKNNQ  124 (124)
T ss_dssp             HHHHHHHH-HCCCCCCCCSTTCCCCCSSTTTTHHHHH-HHC------
T ss_pred             HHHHHHHh-CCCCceECCCCCCCCccCCHHHHHHHHH-HHcccccCC
Confidence            99999998 566899995  59999999999999988 798888763

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.90  E-value=4.9e-25  Score=163.10  Aligned_cols=98  Identities=21%  Similarity=0.444  Sum_probs=54.9

Q ss_pred             CCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHH
Q psy11068        181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSA  260 (292)
Q Consensus       181 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~  260 (292)
                      +++|.|++  |++.|.....|..|+++| .+++||.|++|++.|.....|..|++ +|++++||.|++  |+++|.+...
T Consensus        20 ek~y~C~~--C~k~F~~~~~L~~H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~--C~k~F~~~~~   93 (133)
T 2lt7_A           20 RVYYICIV--CKRSYVCLTSLRRHFNIH-SWEKKYPCRYCEKVFPLAEYRTKHEI-HHTGERRYQCLA--CGKSFINYQF   93 (133)
T ss_dssp             EEEEEETT--TCCEESCHHHHHHHHHHH-HCCSCEECSSSSCEESSHHHHHHHHH-HHHTCCCEEESS--SCCEESSHHH
T ss_pred             CcCeECCC--CCCCcCCHHHHHHHHHHc-CCCCCeeCCccCeecccccchhhhcc-ccCCCccccCCC--CCCCcCCHHH
Confidence            55556655  666666666666665555 44455666666666666666666655 555555666644  6666666666


Q ss_pred             HHhHhhhhcCCC------CcCCCCCccCCcccc
Q psy11068        261 LKRHNKSKHLNM------RMFPCPLVTCGKSFL  287 (292)
Q Consensus       261 l~~H~~~~H~~~------~~~~C~~~~C~~~f~  287 (292)
                      |..|+++ |.++      ++|.|.+  |++.|.
T Consensus        94 L~~H~~~-hh~~~p~~~~k~~~C~~--C~k~~~  123 (133)
T 2lt7_A           94 MSSHIKS-VHSQDPSGDSKLYRLHP--CRSLQI  123 (133)
T ss_dssp             HHHHHHH-HTCCCTTSSSCCEEECC--CCSSCC
T ss_pred             HHHHhHH-hcCCCCCCCCCCeecCC--CCchhh
Confidence            6666553 3222      3355555  555554

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.90  E-value=1.8e-23  Score=153.28  Aligned_cols=115  Identities=23%  Similarity=0.469  Sum_probs=87.2

Q ss_pred             CCccCCCcccchhcCChHHHHHHHHhcCCCCcccccccccchhccChHHHHHHHhhh--cCCCCceeCCCCCCCcccCCH
Q psy11068        121 KCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEH--SNVSAPYMCDYKGCGKSFYLM  198 (292)
Q Consensus       121 ~~~~c~c~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h--~~~~~~~~C~~~~C~~~f~~~  198 (292)
                      ++|.|.  +|++.|.+...|..|++.|.++++|.|..  |++.|.+...|..|+..+  ...+++|.|.+  |++.|.+.
T Consensus         6 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~--C~~~f~~~   79 (124)
T 2dlq_A            6 SGVECP--TCHKKFLSKYYLKVHNRKHTGEKPFECPK--CGKCYFRKENLLEHEARNCMNRSEQVFTCSV--CQETFRRR   79 (124)
T ss_dssp             SSCCCT--TTCCCCSSHHHHHHHHHHHSSCCSCBCTT--TCCBCSSHHHHHHHHHHCCCCSCCCCEECSS--SCCEESSH
T ss_pred             CCCCCC--CCCCcCCCHHHHHHHHHhCCCCCCeECCC--CCchhcCHHHHHHHHhhhhcCCCCCCeECCC--CCCccCCH
Confidence            445665  67777777777777777777777777777  777777777777777753  12367888877  88888888


Q ss_pred             HHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCC
Q psy11068        199 ASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK  242 (292)
Q Consensus       199 ~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~  242 (292)
                      ..|..|+++| .++++|.|++|++.|.....|..|++.+|.++.
T Consensus        80 ~~l~~H~~~h-~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~  122 (124)
T 2dlq_A           80 MELRLHMVSH-TGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS  122 (124)
T ss_dssp             HHHHHHHHHH-SSSCSEECSSSCCEESSHHHHHHHHHHTSSCSS
T ss_pred             HHHHHHHHHc-CCCCCccCCCccchhCCHHHHHHHHHHHCCCCC
Confidence            8888888888 566788888888888888888888876787654

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.89  E-value=1.7e-23  Score=159.70  Aligned_cols=132  Identities=27%  Similarity=0.472  Sum_probs=102.8

Q ss_pred             ccCCCccccccCCCCcccccccccchHHHHHhHhh-cCCCCCCccCCCcccchhcCChHHHHHHHHhcCCCCcccccccc
Q psy11068         81 HFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTS-HDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELG  159 (292)
Q Consensus        81 h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~~c~c~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~  159 (292)
                      ..++.+|.|.+       |++.|.+...|..|++. |.+. .+....  .|                    ..|.|..  
T Consensus        20 ~~~~~~~~C~~-------C~~~f~~~~~L~~H~~~~H~~~-~~~~~~--~~--------------------~~~~C~~--   67 (155)
T 2rpc_A           20 DEAQLSRPKKS-------CDRTFSTMHELVTHVTMEHVGG-PEQNNH--VC--------------------YWEECPR--   67 (155)
T ss_dssp             CTTCCSSSCCC-------CCCCBSSHHHHHHHHHTTTSCC-TTCSSC--CC--------------------CBTTCTT--
T ss_pred             chhhccccccc-------CCcccCCHHHHHHHHHhhcCCC-cccCCc--cc--------------------cccCCCC--
Confidence            44556677777       77777777777777776 4333 221111  11                    2478888  


Q ss_pred             cchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCC--CcccccChhHHHHHHHHh
Q psy11068        160 CGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKG--CGKQFKVPCRLREHYKAV  237 (292)
Q Consensus       160 C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~  237 (292)
                      |++.|.+...|..|++.|.+ +++|.|.++.|++.|.....|.+|+++| .++++|.|.+  |++.|.....|..|++ +
T Consensus        68 C~~~f~~~~~l~~H~~~h~~-~~~~~C~~~~C~~~f~~~~~L~~H~~~h-~~~~~~~C~~~~C~k~f~~~~~L~~H~~-~  144 (155)
T 2rpc_A           68 EGKSFKAKYKLVNHIRVHTG-EKPFPCPFPGCGKIFARSENLKIHKRTH-TGEKPFKCEFEGCDRRFANSSDRKKHMH-V  144 (155)
T ss_dssp             SSCCCSSHHHHHHHTHHHHC-CCSEECSCTTTCCEESCHHHHHHHHTTT-CSSCSBCCSSTTCCCCBSSHHHHHHSST-T
T ss_pred             cccccCCHHHHHHHHHhcCC-CCcccCCcCCCCCccCCHHHHHHHHHhh-CCCCCccCCCCCCCCccCCHHHHHHHHH-H
Confidence            99999999999999998887 7889997556999999999999999988 6678999997  9999999999999988 8


Q ss_pred             cCCCCcccCC
Q psy11068        238 HESTKNFKCT  247 (292)
Q Consensus       238 H~~~~~~~C~  247 (292)
                      |.+++||.|.
T Consensus       145 H~~~k~~~c~  154 (155)
T 2rpc_A          145 HTSDKSGPSS  154 (155)
T ss_dssp             TTSCCCSCSC
T ss_pred             hcCCCCCCCC
Confidence            9999999984

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.89  E-value=2.1e-23  Score=151.91  Aligned_cols=113  Identities=31%  Similarity=0.640  Sum_probs=90.5

Q ss_pred             CCccCCCcccchhcCChHHHHHHHHhcCCCCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHH
Q psy11068        121 KCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMAS  200 (292)
Q Consensus       121 ~~~~c~c~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~  200 (292)
                      ++|.|..+.|++.|.+...|..|++.|.++++|.|....|++.|.+...|..|++.|.+ +++|.|..  |++.|.+...
T Consensus         5 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~--C~~~f~~~~~   81 (119)
T 2jp9_A            5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG-VKPFQCKT--CQRKFSRSDH   81 (119)
T ss_dssp             CCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHC-CCCEECTT--TCCEESCHHH
T ss_pred             eeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCC-CCCccCCc--cCchhCCHHH
Confidence            56777633488888888888888888888888888721288888888888888888886 78888877  8888888888


Q ss_pred             HHHHHHHhcCCCCCccc--CCCcccccChhHHHHHHHHhc
Q psy11068        201 LKSHQRVHVTNPEDLVC--KGCGKQFKVPCRLREHYKAVH  238 (292)
Q Consensus       201 l~~H~~~h~~~~~~~~C--~~C~~~f~~~~~L~~H~~~~H  238 (292)
                      |..|+++| .++++|.|  +.|++.|.+...|..|++ +|
T Consensus        82 l~~H~~~h-~~~~~~~C~~~~C~~~f~~~~~L~~H~~-~H  119 (119)
T 2jp9_A           82 LKTHTRTH-TGEKPFSCRWPSCQKKFARSDELVRHHN-MH  119 (119)
T ss_dssp             HHHHHHHH-HTCCCEECCSTTCCCEESSHHHHHHHHH-TC
T ss_pred             HHHHHHHh-cCCCCeeCCCCCCccccCCHHHHHHHHh-cC
Confidence            88888888 55678888  788888888888888877 55

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.89  E-value=3.4e-24  Score=158.60  Aligned_cols=108  Identities=26%  Similarity=0.445  Sum_probs=87.2

Q ss_pred             HHHhcCCCCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcc
Q psy11068        143 HMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGK  222 (292)
Q Consensus       143 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~  222 (292)
                      |..+|.|+++|.|.+  |+++|.+...|..|++.|.+ ++||.|+.  |++.|.+...|..|+++| .+++||.|++|++
T Consensus        13 ~~~~h~Gek~y~C~~--C~k~F~~~~~L~~H~~~H~~-~k~~~C~~--C~k~F~~~~~L~~H~~~H-~~~k~~~C~~C~k   86 (133)
T 2lt7_A           13 YELIVDGRVYYICIV--CKRSYVCLTSLRRHFNIHSW-EKKYPCRY--CEKVFPLAEYRTKHEIHH-TGERRYQCLACGK   86 (133)
T ss_dssp             EEEEETTEEEEEETT--TCCEESCHHHHHHHHHHHHC-CSCEECSS--SSCEESSHHHHHHHHHHH-HTCCCEEESSSCC
T ss_pred             ceeecCCCcCeECCC--CCCCcCCHHHHHHHHHHcCC-CCCeeCCc--cCeecccccchhhhcccc-CCCccccCCCCCC
Confidence            345677888888888  88888888888888888887 78888887  888888888888888888 6678888888888


Q ss_pred             cccChhHHHHHHHHhcCC-----CCcccCCcCCccccccCH
Q psy11068        223 QFKVPCRLREHYKAVHES-----TKNFKCTYDGCKLLFSTK  258 (292)
Q Consensus       223 ~f~~~~~L~~H~~~~H~~-----~~~~~C~~~~C~~~f~~~  258 (292)
                      .|.....|..|+++.|.+     .++|+|.+  |++.|...
T Consensus        87 ~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~--C~k~~~~~  125 (133)
T 2lt7_A           87 SFINYQFMSSHIKSVHSQDPSGDSKLYRLHP--CRSLQIRQ  125 (133)
T ss_dssp             EESSHHHHHHHHHHHTCCCTTSSSCCEEECC--CCSSCCCC
T ss_pred             CcCCHHHHHHHhHHhcCCCCCCCCCCeecCC--CCchhhhc
Confidence            888888888888844432     35688877  98887543

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.82  E-value=4.4e-20  Score=131.39  Aligned_cols=91  Identities=29%  Similarity=0.583  Sum_probs=82.7

Q ss_pred             CCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHH
Q psy11068        181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSA  260 (292)
Q Consensus       181 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~  260 (292)
                      +++|.|..  |++.|.....|..|+++| .++++|.|.+|++.|.....|..|++ +|.++++|.|.+  |++.|.+...
T Consensus        15 ~~~~~C~~--C~~~f~~~~~l~~H~~~h-~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~   88 (106)
T 2ee8_A           15 KKEFICKF--CGRHFTKSYNLLIHERTH-TDERPYTCDICHKAFRRQDHLRDHRY-IHSKEKPFKCQE--CGKGFCQSRT   88 (106)
T ss_dssp             CCCCBCSS--SCCBCSSHHHHHHHHHHH-CCSCCCBCSSSCCBCSCHHHHHHHGG-GSCCCCTTSCSS--SCCCCSSHHH
T ss_pred             CcCeECCC--CCCccCCHHHHHHHHHHc-CCCCCcCCCCccchhCCHHHHHHHHH-HhCCCCCeECCC--cCCcccCHHH
Confidence            67899988  999999999999999998 66789999999999999999999988 899999999987  9999999999


Q ss_pred             HHhHhhhhcCCCCcCCCC
Q psy11068        261 LKRHNKSKHLNMRMFPCP  278 (292)
Q Consensus       261 l~~H~~~~H~~~~~~~C~  278 (292)
                      |..|++ .|.+++||...
T Consensus        89 L~~H~~-~H~~~~~~~~~  105 (106)
T 2ee8_A           89 LAVHKT-LHMQTSSPTAA  105 (106)
T ss_dssp             HHHHHH-HTTSCCCCCCC
T ss_pred             HHHHHH-HhCCCCCCcCC
Confidence            999998 79999998753

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.82  E-value=2.5e-20  Score=128.53  Aligned_cols=88  Identities=32%  Similarity=0.650  Sum_probs=76.8

Q ss_pred             CCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHH
Q psy11068        181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSA  260 (292)
Q Consensus       181 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~  260 (292)
                      ++||.|.++.|++.|.....|..|+++| .++++|.|..|++.|.....|..|++ +|.++++|.|++  |++.|.+...
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~   77 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDI--CGRKFARSDE   77 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHH-HCCCCEECTTTCCEESCHHHHHHHHH-HHHCCCCEECTT--TCCEESSHHH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHh-CCCCCccCCCCCcccCCHHHHHHHHH-HcCCCCCccCCC--CCchhCCHHH
Confidence            6789997334999999999999999998 56689999999999999999999998 899999999987  9999999999


Q ss_pred             HHhHhhhhcCCCC
Q psy11068        261 LKRHNKSKHLNMR  273 (292)
Q Consensus       261 l~~H~~~~H~~~~  273 (292)
                      |..|++ .|.+++
T Consensus        78 l~~H~~-~H~~~k   89 (90)
T 1a1h_A           78 RKRHTK-IHLRQK   89 (90)
T ss_dssp             HHHHHG-GGGC--
T ss_pred             HHHHHH-HhcccC
Confidence            999999 688875

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=1.8e-20  Score=133.69  Aligned_cols=97  Identities=24%  Similarity=0.369  Sum_probs=86.1

Q ss_pred             HHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCcc
Q psy11068        173 HLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCK  252 (292)
Q Consensus       173 H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~  252 (292)
                      +++.|.+ +++|.|..  |++.|.....|..|+++|.   ++|.|.+|++.|.....|..|++  |.+++||+|.+  |+
T Consensus         7 ~~~~h~~-~~~~~C~~--C~~~f~~~~~l~~H~~~H~---~~~~C~~C~~~f~~~~~l~~H~~--H~~~~~~~C~~--C~   76 (107)
T 1wjp_A            7 GASPVEN-KEVYQCRL--CNAKLSSLLEQGSHERLCR---NAAVCPYCSLRFFSPELKQEHES--KCEYKKLTCLE--CM   76 (107)
T ss_dssp             CCCCCCC-CCCCBCTT--TCCBCSSHHHHHHHHHHHH---HSBCCTTTCCCBSSHHHHHHHHH--HCSTGGGEEGG--GT
T ss_pred             cCcccCC-CcCeECCC--CCCccCCHHHHHHHHHHCC---CCccCCCCCCccCCHHHHHHHHH--cCCCCCccCcc--cc
Confidence            3456666 78999988  9999999999999999983   58999999999999999999973  99999999987  99


Q ss_pred             ccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        253 LLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       253 ~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      +.|.+...|..|++.+|.+++||.|..
T Consensus        77 ~~f~~~~~L~~H~~~~H~~~~~~~~~~  103 (107)
T 1wjp_A           77 RTFKSSFSIWRHQVEVHNQNNMAPTSG  103 (107)
T ss_dssp             EECSSHHHHHHHHHHTSCCCCCCCCCC
T ss_pred             chhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            999999999999976899999999864

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=1.5e-19  Score=126.12  Aligned_cols=89  Identities=30%  Similarity=0.532  Sum_probs=79.3

Q ss_pred             CCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHH
Q psy11068        180 VSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKS  259 (292)
Q Consensus       180 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~  259 (292)
                      ++++|.|..  |++.|.+...|..|+++| .++++|.|..|++.|.....|..|++ +|.++++|.|.+  |++.|.+..
T Consensus         5 ~~~~~~C~~--C~~~f~~~~~l~~H~~~h-~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~   78 (96)
T 2dmd_A            5 SSGPHKCEV--CGKCFSRKDKLKTHMRCH-TGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQI--CPYASRNSS   78 (96)
T ss_dssp             CCCCCCBTT--TTBCCCCHHHHHHHGGGC-CCCCSEECSSSCCEESSHHHHHHHHH-HSCCCCCEECSS--SSCEESSHH
T ss_pred             CCcCeECCC--CCCccCCHHHHHHHHHhc-CCCCCEeCCCCCCccCCHHHHHHHHH-HhCCCCCccCCC--CCCccCCHH
Confidence            378899988  999999999999999998 56789999999999999999999988 899999999987  999999999


Q ss_pred             HHHhHhhhhcCCCCcC
Q psy11068        260 ALKRHNKSKHLNMRMF  275 (292)
Q Consensus       260 ~l~~H~~~~H~~~~~~  275 (292)
                      .|..|++ .|.++++.
T Consensus        79 ~l~~H~~-~h~~~~~p   93 (96)
T 2dmd_A           79 QLTVHLR-SHTGDSGP   93 (96)
T ss_dssp             HHHHHHT-TCCSCCCC
T ss_pred             HHHHHHH-HhcCCCCC
Confidence            9999998 68777643

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.79  E-value=4e-19  Score=123.71  Aligned_cols=87  Identities=30%  Similarity=0.528  Sum_probs=73.7

Q ss_pred             CCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCC--CcccCCcCCccccccCH
Q psy11068        181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHEST--KNFKCTYDGCKLLFSTK  258 (292)
Q Consensus       181 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~--~~~~C~~~~C~~~f~~~  258 (292)
                      +++|.|..  |++.|.+...|..|+++| .++++|.|.+|++.|.....|..|++ +|.++  ++|.|.+  |++.|.+.
T Consensus         5 ~~~~~C~~--C~~~f~~~~~l~~H~~~h-~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~~~C~~--C~~~f~~~   78 (95)
T 2yt9_A            5 SSGVACEI--CGKIFRDVYHLNRHKLSH-SGEKPYSCPVCGLRFKRKDRMSYHVR-SHDGSVGKPYICQS--CGKGFSRP   78 (95)
T ss_dssp             CSCEECSS--SCCEESSSHHHHHHHHHS-CSSCSEECSSSCCEESCHHHHHHHHH-HHCCCCCSSBCCSS--SCCCBSSH
T ss_pred             CCCeECCC--CCCccCChHHHHHHHHhc-CCCCCCcCCCCCCccCCHHHHHHHHH-HhcCCCCCceECCC--ccchhCCH
Confidence            67889987  999999888999998888 56688999999999999999999988 77776  8899977  99999999


Q ss_pred             HHHHhHhhhhcCCCC
Q psy11068        259 SALKRHNKSKHLNMR  273 (292)
Q Consensus       259 ~~l~~H~~~~H~~~~  273 (292)
                      ..|..|++..|.++.
T Consensus        79 ~~L~~H~~~~H~~~~   93 (95)
T 2yt9_A           79 DHLNGHIKQVHSGPS   93 (95)
T ss_dssp             HHHHHHHHHTSCCCS
T ss_pred             HHHHHHHHHhcCCCC
Confidence            999999865787753

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.79  E-value=4.7e-19  Score=126.00  Aligned_cols=92  Identities=28%  Similarity=0.587  Sum_probs=77.9

Q ss_pred             CCCCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccCh
Q psy11068        148 GKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVP  227 (292)
Q Consensus       148 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~  227 (292)
                      ..+++|.|.+  |++.|.+...|..|++.|.+ +++|.|..  |++.|.....|..|+++| .++++|.|.+|++.|...
T Consensus        13 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~-~~~~~C~~--C~~~f~~~~~l~~H~~~h-~~~~~~~C~~C~~~f~~~   86 (106)
T 2ee8_A           13 KTKKEFICKF--CGRHFTKSYNLLIHERTHTD-ERPYTCDI--CHKAFRRQDHLRDHRYIH-SKEKPFKCQECGKGFCQS   86 (106)
T ss_dssp             CCCCCCBCSS--SCCBCSSHHHHHHHHHHHCC-SCCCBCSS--SCCBCSCHHHHHHHGGGS-CCCCTTSCSSSCCCCSSH
T ss_pred             CCCcCeECCC--CCCccCCHHHHHHHHHHcCC-CCCcCCCC--ccchhCCHHHHHHHHHHh-CCCCCeECCCcCCcccCH
Confidence            3457788888  88888888888888888886 78888887  999998888899998888 566889999999999999


Q ss_pred             hHHHHHHHHhcCCCCcccC
Q psy11068        228 CRLREHYKAVHESTKNFKC  246 (292)
Q Consensus       228 ~~L~~H~~~~H~~~~~~~C  246 (292)
                      ..|..|++ +|.+++||.+
T Consensus        87 ~~L~~H~~-~H~~~~~~~~  104 (106)
T 2ee8_A           87 RTLAVHKT-LHMQTSSPTA  104 (106)
T ss_dssp             HHHHHHHH-HTTSCCCCCC
T ss_pred             HHHHHHHH-HhCCCCCCcC
Confidence            99999987 8888888865

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.79  E-value=2.1e-19  Score=121.58  Aligned_cols=82  Identities=33%  Similarity=0.681  Sum_probs=70.7

Q ss_pred             ceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHH
Q psy11068        183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALK  262 (292)
Q Consensus       183 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~  262 (292)
                      ||.|..  |++.|.....|..|+++| .++++|.|..|++.|.....|..|++ +|.++++|.|++  |++.|.+...|.
T Consensus         1 ~~~C~~--C~~~f~~~~~l~~H~~~h-~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~   74 (82)
T 2kmk_A            1 SFDCKI--CGKSFKRSSTLSTHLLIH-SDTRPYPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKCQV--CGKAFSQSSNLI   74 (82)
T ss_dssp             CEECSS--SCCEESSHHHHHHHHHHH-HTCCCEECSSSCCEESSHHHHHHHHH-HHHTCCCEECTT--TSCEESSHHHHH
T ss_pred             CccCCC--CcccccCchhHHHHHHHc-CCCCCeeCCcCChhhCCHHHHHHHHH-HhcCCCCCcCCC--cchhhCChHHHH
Confidence            588887  999999999999999988 55688999999999999999999988 788889999977  999999999999


Q ss_pred             hHhhhhcCC
Q psy11068        263 RHNKSKHLN  271 (292)
Q Consensus       263 ~H~~~~H~~  271 (292)
                      .|++ .|+|
T Consensus        75 ~H~~-~H~g   82 (82)
T 2kmk_A           75 THSR-KHTG   82 (82)
T ss_dssp             HHHH-HHC-
T ss_pred             HHHH-hhCC
Confidence            9998 5754

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=1.4e-20  Score=135.97  Aligned_cols=105  Identities=16%  Similarity=0.233  Sum_probs=86.3

Q ss_pred             hHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHH--hcCCCCCcccCCCcccc--cChhHHHHHHHHhcCCCC
Q psy11068        167 MKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRV--HVTNPEDLVCKGCGKQF--KVPCRLREHYKAVHESTK  242 (292)
Q Consensus       167 ~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~~C~~C~~~f--~~~~~L~~H~~~~H~~~~  242 (292)
                      ...|..|++.|++ ++||.|..  |++.|.....|..|+++  |......+.|.+|++.|  .....|..|++ +|.+++
T Consensus         4 ~~~l~~H~~~H~~-~~~~~C~~--C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~-~H~~~~   79 (115)
T 2dmi_A            4 GSSGKLYGSIFTG-ASKFRCKD--CSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEG-KEDAQK   79 (115)
T ss_dssp             CCCCCCCCCCCCC-CCSEEBSS--SSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCC-SCCCCS
T ss_pred             chhhhhheeeeCC-CCCEECCc--cCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhh-ccCCCc
Confidence            3457788888887 89999987  99999999999999998  63333344599999998  89999999988 899999


Q ss_pred             cccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCC
Q psy11068        243 NFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCP  278 (292)
Q Consensus       243 ~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  278 (292)
                      ||.|.+  |++.|.+...|..|++. |........+
T Consensus        80 ~~~C~~--C~k~f~~~~~L~~H~~~-hh~~~~~~~~  112 (115)
T 2dmi_A           80 VLKCMY--CGHSFESLQDLSVHMIK-TKHYQKVSGP  112 (115)
T ss_dssp             SCBCSS--SCCBCSSHHHHHHHHHH-TTTTTCSCCC
T ss_pred             ceECCC--CCCccCCHHHHHHHHHH-hCCcccCCCC
Confidence            999987  99999999999999994 5444445544

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.78  E-value=1.5e-19  Score=128.85  Aligned_cols=95  Identities=18%  Similarity=0.369  Sum_probs=84.2

Q ss_pred             HHhcCCCCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCccc
Q psy11068        144 MVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQ  223 (292)
Q Consensus       144 ~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~  223 (292)
                      ++.|.++++|.|.+  |++.|.+...|..|++.|.   ++|.|..  |++.|.....|..|+. | .++++|.|.+|++.
T Consensus         8 ~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~---~~~~C~~--C~~~f~~~~~l~~H~~-H-~~~~~~~C~~C~~~   78 (107)
T 1wjp_A            8 ASPVENKEVYQCRL--CNAKLSSLLEQGSHERLCR---NAAVCPY--CSLRFFSPELKQEHES-K-CEYKKLTCLECMRT   78 (107)
T ss_dssp             CCCCCCCCCCBCTT--TCCBCSSHHHHHHHHHHHH---HSBCCTT--TCCCBSSHHHHHHHHH-H-CSTGGGEEGGGTEE
T ss_pred             CcccCCCcCeECCC--CCCccCCHHHHHHHHHHCC---CCccCCC--CCCccCCHHHHHHHHH-c-CCCCCccCccccch
Confidence            45678888999999  9999999999999999883   6799988  9999999999999995 6 77789999999999


Q ss_pred             ccChhHHHHHHHHhcCCCCcccCC
Q psy11068        224 FKVPCRLREHYKAVHESTKNFKCT  247 (292)
Q Consensus       224 f~~~~~L~~H~~~~H~~~~~~~C~  247 (292)
                      |.....|..|++.+|.++++|.|.
T Consensus        79 f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           79 FKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             CSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             hCCHHHHHHHHHHHcCCCCCCCCC
Confidence            999999999997789999999885

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.77  E-value=5.9e-19  Score=121.56  Aligned_cols=88  Identities=26%  Similarity=0.591  Sum_probs=67.9

Q ss_pred             CCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhH
Q psy11068        150 PLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCR  229 (292)
Q Consensus       150 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~  229 (292)
                      +++|.|.++.|++.|.+...|..|++.|.+ +++|.|..  |++.|.+...|..|+++| .++++|.|.+|++.|.....
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~--C~~~f~~~~~l~~H~~~h-~~~~~~~C~~C~~~f~~~~~   77 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTG-QKPFQCRI--CMRNFSRSDHLTTHIRTH-TGEKPFACDICGRKFARSDE   77 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHC-CCCEECTT--TCCEESCHHHHHHHHHHH-HCCCCEECTTTCCEESSHHH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCC-CCCccCCC--CCcccCCHHHHHHHHHHc-CCCCCccCCCCCchhCCHHH
Confidence            567888622388888888888888888876 77888877  888888888888888887 45678888888888888888


Q ss_pred             HHHHHHHhcCCCC
Q psy11068        230 LREHYKAVHESTK  242 (292)
Q Consensus       230 L~~H~~~~H~~~~  242 (292)
                      |..|++ +|.+++
T Consensus        78 l~~H~~-~H~~~k   89 (90)
T 1a1h_A           78 RKRHTK-IHLRQK   89 (90)
T ss_dssp             HHHHHG-GGGC--
T ss_pred             HHHHHH-HhcccC
Confidence            888877 787764

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=1.4e-18  Score=121.23  Aligned_cols=90  Identities=26%  Similarity=0.523  Sum_probs=73.4

Q ss_pred             cCCCCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccC
Q psy11068        147 HGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKV  226 (292)
Q Consensus       147 h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~  226 (292)
                      +.++++|.|.+  |++.|.+...|..|++.|.+ +++|.|..  |++.|.....|..|+++| .++++|.|.+|++.|..
T Consensus         3 ~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~-~~~~~C~~--C~~~f~~~~~l~~H~~~h-~~~~~~~C~~C~~~f~~   76 (96)
T 2dmd_A            3 SGSSGPHKCEV--CGKCFSRKDKLKTHMRCHTG-VKPYKCKT--CDYAAADSSSLNKHLRIH-SDERPFKCQICPYASRN   76 (96)
T ss_dssp             CCCCCCCCBTT--TTBCCCCHHHHHHHGGGCCC-CCSEECSS--SCCEESSHHHHHHHHHHS-CCCCCEECSSSSCEESS
T ss_pred             CCCCcCeECCC--CCCccCCHHHHHHHHHhcCC-CCCEeCCC--CCCccCCHHHHHHHHHHh-CCCCCccCCCCCCccCC
Confidence            35667888888  88888888888888888876 77888877  888888888888888887 56678888888888888


Q ss_pred             hhHHHHHHHHhcCCCCc
Q psy11068        227 PCRLREHYKAVHESTKN  243 (292)
Q Consensus       227 ~~~L~~H~~~~H~~~~~  243 (292)
                      ...|..|++ +|.++++
T Consensus        77 ~~~l~~H~~-~h~~~~~   92 (96)
T 2dmd_A           77 SSQLTVHLR-SHTGDSG   92 (96)
T ss_dssp             HHHHHHHHT-TCCSCCC
T ss_pred             HHHHHHHHH-HhcCCCC
Confidence            888888887 7777664

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.76  E-value=2.8e-18  Score=119.39  Aligned_cols=90  Identities=31%  Similarity=0.631  Sum_probs=76.3

Q ss_pred             CCCCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCC-CCCcccCCCcccccC
Q psy11068        148 GKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTN-PEDLVCKGCGKQFKV  226 (292)
Q Consensus       148 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-~~~~~C~~C~~~f~~  226 (292)
                      .++++|.|.+  |++.|.+...|..|++.|.+ +++|.|..  |++.|.....|..|+++|++. .++|.|.+|++.|..
T Consensus         3 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~-~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~   77 (95)
T 2yt9_A            3 SGSSGVACEI--CGKIFRDVYHLNRHKLSHSG-EKPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSR   77 (95)
T ss_dssp             CCCSCEECSS--SCCEESSSHHHHHHHHHSCS-SCSEECSS--SCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSS
T ss_pred             CCCCCeECCC--CCCccCChHHHHHHHHhcCC-CCCCcCCC--CCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCC
Confidence            4577889988  99999999999999998886 78899987  999999999999999988443 278999999999999


Q ss_pred             hhHHHHHHHHhcCCCC
Q psy11068        227 PCRLREHYKAVHESTK  242 (292)
Q Consensus       227 ~~~L~~H~~~~H~~~~  242 (292)
                      ...|..|++.+|.++.
T Consensus        78 ~~~L~~H~~~~H~~~~   93 (95)
T 2yt9_A           78 PDHLNGHIKQVHSGPS   93 (95)
T ss_dssp             HHHHHHHHHHTSCCCS
T ss_pred             HHHHHHHHHHhcCCCC
Confidence            9999999876887653

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=2.1e-18  Score=123.44  Aligned_cols=86  Identities=31%  Similarity=0.573  Sum_probs=75.4

Q ss_pred             hhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccc
Q psy11068        176 EHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLF  255 (292)
Q Consensus       176 ~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f  255 (292)
                      .|.+ +++|.| .  |++.|.....|..|+++| .++++|.|.+|++.|.....|..|++ +|.++++|.|.+  |++.|
T Consensus         4 ~h~~-~k~~~C-~--C~~~f~~~~~l~~H~~~h-~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f   75 (110)
T 2csh_A            4 GSSG-DKLYPC-Q--CGKSFTHKSQRDRHMSMH-LGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNI--CAKRF   75 (110)
T ss_dssp             CCCC-CCCEEC-T--TSCEESSHHHHHHHHHHH-SCCCSEECTTTSCEESSSHHHHHHHT-TTCCCCCEECSS--SCCEE
T ss_pred             CCCC-CCCEec-c--CCCccCCHHHHHHHHHHc-CCCcCccCCCCCcccCCHHHHHHHHH-HcCCCCCeeCCC--Ccchh
Confidence            3555 788999 7  999999999999999998 56688999999999999999999988 899999999987  99999


Q ss_pred             cCHHHHHhHhhhhc
Q psy11068        256 STKSALKRHNKSKH  269 (292)
Q Consensus       256 ~~~~~l~~H~~~~H  269 (292)
                      .+...|..|+++.|
T Consensus        76 ~~~~~l~~H~~~~~   89 (110)
T 2csh_A           76 MWRDSFHRHVTSCT   89 (110)
T ss_dssp             SCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcc
Confidence            99999999998544

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.75  E-value=6e-18  Score=118.86  Aligned_cols=86  Identities=36%  Similarity=0.675  Sum_probs=76.6

Q ss_pred             CCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccC--CCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCH
Q psy11068        181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTK  258 (292)
Q Consensus       181 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~--~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~  258 (292)
                      .++|.|.++.|++.|.....|..|+++| .++++|.|.  .|++.|.....|..|++ +|.++++|.|.+  |++.|.+.
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~   88 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLKAHLRTH-TGEKPYKCTWEGCDWRFARSDELTRHYR-KHTGAKPFQCGV--CNRSFSRS   88 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHHHHHHHH-SCCCCEECCSSSCCCEESSHHHHHHHHH-HHTSCCSCBCSS--SCCBCSSH
T ss_pred             CcceEcCCCCCCCcccCHHHHHHHHHHh-CCCCCeeCCCCCCCCccCCHHHHHHHHH-HhCCCCCeECCC--CcCccCCH
Confidence            5789998667999999999999999998 667899996  69999999999999988 899999999987  99999999


Q ss_pred             HHHHhHhhhhcCC
Q psy11068        259 SALKRHNKSKHLN  271 (292)
Q Consensus       259 ~~l~~H~~~~H~~  271 (292)
                      ..|..|++ .|.+
T Consensus        89 ~~l~~H~~-~H~~  100 (100)
T 2ebt_A           89 DHLALHMK-RHQN  100 (100)
T ss_dssp             HHHHHHHH-HHCC
T ss_pred             HHHHHHHH-HhCC
Confidence            99999998 6754

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.75  E-value=2.5e-18  Score=116.20  Aligned_cols=82  Identities=37%  Similarity=0.750  Sum_probs=65.7

Q ss_pred             cccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHH
Q psy11068        152 TLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLR  231 (292)
Q Consensus       152 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~  231 (292)
                      +|.|.+  |++.|.+...|..|++.|.+ +++|.|..  |++.|.....|..|+++| .++++|.|..|++.|.....|.
T Consensus         1 ~~~C~~--C~~~f~~~~~l~~H~~~h~~-~~~~~C~~--C~~~f~~~~~l~~H~~~h-~~~~~~~C~~C~~~f~~~~~l~   74 (82)
T 2kmk_A            1 SFDCKI--CGKSFKRSSTLSTHLLIHSD-TRPYPCQY--CGKRFHQKSDMKKHTFIH-TGEKPHKCQVCGKAFSQSSNLI   74 (82)
T ss_dssp             CEECSS--SCCEESSHHHHHHHHHHHHT-CCCEECSS--SCCEESSHHHHHHHHHHH-HTCCCEECTTTSCEESSHHHHH
T ss_pred             CccCCC--CcccccCchhHHHHHHHcCC-CCCeeCCc--CChhhCCHHHHHHHHHHh-cCCCCCcCCCcchhhCChHHHH
Confidence            467888  88888888888888888876 77888877  888888888888888888 4567888888888888888888


Q ss_pred             HHHHHhcCC
Q psy11068        232 EHYKAVHES  240 (292)
Q Consensus       232 ~H~~~~H~~  240 (292)
                      .|++ +|+|
T Consensus        75 ~H~~-~H~g   82 (82)
T 2kmk_A           75 THSR-KHTG   82 (82)
T ss_dssp             HHHH-HHC-
T ss_pred             HHHH-hhCC
Confidence            8887 6653

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=9.1e-20  Score=131.74  Aligned_cols=101  Identities=18%  Similarity=0.241  Sum_probs=68.9

Q ss_pred             HHHHHHHHhcCCCCcccccccccchhccChHHHHHHHhh--hcCCCCc-eeCCCCCCCccc--CCHHHHHHHHHHhcCCC
Q psy11068        138 SNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKE--HSNVSAP-YMCDYKGCGKSF--YLMASLKSHQRVHVTNP  212 (292)
Q Consensus       138 ~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~-~~C~~~~C~~~f--~~~~~l~~H~~~h~~~~  212 (292)
                      ..|..|+++|.++++|.|..  |++.|.+...|..|++.  |.+ .++ +.|..  |++.|  .....|..|+++| .++
T Consensus         5 ~~l~~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~~~h~~-~~~~~~C~~--C~~~f~f~~~~~l~~H~~~H-~~~   78 (115)
T 2dmi_A            5 SSGKLYGSIFTGASKFRCKD--CSAAYDTLVELTVHMNETGHYR-DDNHETDNN--NPKRWSKPRKRSLLEMEGKE-DAQ   78 (115)
T ss_dssp             CCCCCCCCCCCCCCSEEBSS--SSCEESSHHHHHHHHHHTCCCB-CSCCCCCCC--CCSCCSSCCCCCCCCCCCSC-CCC
T ss_pred             hhhhhheeeeCCCCCEECCc--cCchhcCHHHHHHHHHHhCccc-cCCCccCCC--CCcccccccHHHHHHHhhcc-CCC
Confidence            44566667777777777777  77777777777777776  554 333 34766  77777  7777777777777 556


Q ss_pred             CCcccCCCcccccChhHHHHHHHHhcCCCCccc
Q psy11068        213 EDLVCKGCGKQFKVPCRLREHYKAVHESTKNFK  245 (292)
Q Consensus       213 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~  245 (292)
                      +||.|.+|++.|.....|..|++ +|.......
T Consensus        79 ~~~~C~~C~k~f~~~~~L~~H~~-~hh~~~~~~  110 (115)
T 2dmi_A           79 KVLKCMYCGHSFESLQDLSVHMI-KTKHYQKVS  110 (115)
T ss_dssp             SSCBCSSSCCBCSSHHHHHHHHH-HTTTTTCSC
T ss_pred             cceECCCCCCccCCHHHHHHHHH-HhCCcccCC
Confidence            77777777777777777777777 444444333

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.75  E-value=1.3e-18  Score=109.33  Aligned_cols=58  Identities=28%  Similarity=0.515  Sum_probs=49.6

Q ss_pred             CCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCC
Q psy11068        212 PEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMR  273 (292)
Q Consensus       212 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~  273 (292)
                      ++||.|.+|+++|...+.|..|++ +|++++||.|.+  ||++|.+...|..|++ +|+|+.
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~-~Ht~ekp~~C~~--C~k~F~~~~~L~~H~~-~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRR-AHLGYRPRSCPE--CGKCFRDQSEVNRHLK-VHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHH-HHHTCCCEECTT--TCCEESSHHHHHHHGG-GGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHH-HhCCCcCeECCC--CCCCcCCHHHHHHHhC-ccCCCC
Confidence            578889999999998889999988 888889999977  9999999999999988 688763

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.73  E-value=6.1e-18  Score=116.13  Aligned_cols=84  Identities=38%  Similarity=0.774  Sum_probs=75.8

Q ss_pred             CCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccC--CCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCH
Q psy11068        181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTK  258 (292)
Q Consensus       181 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~--~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~  258 (292)
                      ..+|.|.+++|++.|.....|..|+++| .++++|.|+  .|++.|.....|..|++ +|.++++|.|+.  |++.|.+.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~   78 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTH-TGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQK--CDRAFSRS   78 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTS-CSSCCEECCSTTTCCEESSHHHHHHHHH-HHHCCCCEECSS--SSCEESSH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhc-CCCCCcCCCCCCCCCccCCHHHHHHHHH-HcCCCCCccCCC--CCcccCCH
Confidence            4679998777999999999999999998 667899997  69999999999999988 899999999987  99999999


Q ss_pred             HHHHhHhhhhc
Q psy11068        259 SALKRHNKSKH  269 (292)
Q Consensus       259 ~~l~~H~~~~H  269 (292)
                      ..|..|++ .|
T Consensus        79 ~~l~~H~~-~H   88 (89)
T 2wbs_A           79 DHLALHMK-RH   88 (89)
T ss_dssp             HHHHHHGG-GG
T ss_pred             HHHHHHHH-hh
Confidence            99999998 57

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=1.1e-17  Score=112.18  Aligned_cols=74  Identities=31%  Similarity=0.494  Sum_probs=50.4

Q ss_pred             CCCCcccCC--CcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCCccCCcccc
Q psy11068        211 NPEDLVCKG--CGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSFL  287 (292)
Q Consensus       211 ~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~  287 (292)
                      ++++|.|..  |++.|.....|..|++.+|.++++|.|++++|++.|.++..|..|++ .|.+++||.|++  ||++|.
T Consensus         4 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~--C~k~F~   79 (79)
T 2dlk_A            4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK-LHSDTRDYICEF--SGPSSG   79 (79)
T ss_dssp             CCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHH-HHHTSCCCSCCS--SSCCCC
T ss_pred             CCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHH-HhCCCCCeeCCC--CCCCCC
Confidence            456666665  77777777777777664577777777743337777777777777776 577777777776  777763

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=1.6e-17  Score=118.78  Aligned_cols=84  Identities=27%  Similarity=0.556  Sum_probs=70.5

Q ss_pred             hcCCCCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCccccc
Q psy11068        146 RHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFK  225 (292)
Q Consensus       146 ~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~  225 (292)
                      .|.++++|.| .  |++.|.+...|..|++.|.+ +++|.|..  |++.|.....|..|+++| .++++|.|.+|++.|.
T Consensus         4 ~h~~~k~~~C-~--C~~~f~~~~~l~~H~~~h~~-~~~~~C~~--C~~~f~~~~~l~~H~~~h-~~~~~~~C~~C~~~f~   76 (110)
T 2csh_A            4 GSSGDKLYPC-Q--CGKSFTHKSQRDRHMSMHLG-LRPYGCGV--CGKKFKMKHHLVGHMKIH-TGIKPYECNICAKRFM   76 (110)
T ss_dssp             CCCCCCCEEC-T--TSCEESSHHHHHHHHHHHSC-CCSEECTT--TSCEESSSHHHHHHHTTT-CCCCCEECSSSCCEES
T ss_pred             CCCCCCCEec-c--CCCccCCHHHHHHHHHHcCC-CcCccCCC--CCcccCCHHHHHHHHHHc-CCCCCeeCCCCcchhc
Confidence            4677888888 7  88888888888888888886 78888877  888888888888888888 5667888888888888


Q ss_pred             ChhHHHHHHHH
Q psy11068        226 VPCRLREHYKA  236 (292)
Q Consensus       226 ~~~~L~~H~~~  236 (292)
                      ....|..|++.
T Consensus        77 ~~~~l~~H~~~   87 (110)
T 2csh_A           77 WRDSFHRHVTS   87 (110)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            88888888884

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.71  E-value=1.7e-17  Score=113.87  Aligned_cols=85  Identities=33%  Similarity=0.713  Sum_probs=49.9

Q ss_pred             CcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHH
Q psy11068        151 LTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRL  230 (292)
Q Consensus       151 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L  230 (292)
                      ..|.|..++|++.|.+...|..|++.|.+ +++|.|.++.|++.|.....|..|+++| .++++|.|+.|++.|.....|
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~~C~~C~~~f~~~~~l   81 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTG-EKPYHCDWDGCGWKFARSDELTRHYRKH-TGHRPFQCQKCDRAFSRSDHL   81 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHTTSCS-SCCEECCSTTTCCEESSHHHHHHHHHHH-HCCCCEECSSSSCEESSHHHH
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHHhcCC-CCCcCCCCCCCCCccCCHHHHHHHHHHc-CCCCCccCCCCCcccCCHHHH
Confidence            44555555566666666666666665554 5556664223666666666666666666 344566666666666666666


Q ss_pred             HHHHHHhc
Q psy11068        231 REHYKAVH  238 (292)
Q Consensus       231 ~~H~~~~H  238 (292)
                      ..|++ +|
T Consensus        82 ~~H~~-~H   88 (89)
T 2wbs_A           82 ALHMK-RH   88 (89)
T ss_dssp             HHHGG-GG
T ss_pred             HHHHH-hh
Confidence            66655 44

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.70  E-value=6.7e-17  Score=113.44  Aligned_cols=90  Identities=30%  Similarity=0.656  Sum_probs=74.6

Q ss_pred             CCCCCCcccccCCCCcccccChHHHHhHHhhccCCCccccc--cCCCCcccccccccchHHHHHhHhhcCCCCCCccCCC
Q psy11068         50 NSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCK--LTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQ  127 (292)
Q Consensus        50 ~~~~~~~~~C~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~--~~~~~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~c~c  127 (292)
                      .....++|.|.+..|++.|.....|..|++.|.++++|.|.  .       |++.|.....|..|+++|+++ ++|.|. 
T Consensus         9 ~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~-------C~~~f~~~~~l~~H~~~h~~~-~~~~C~-   79 (100)
T 2ebt_A            9 DLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEG-------CDWRFARSDELTRHYRKHTGA-KPFQCG-   79 (100)
T ss_dssp             CCCSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSS-------CCCEESSHHHHHHHHHHHTSC-CSCBCS-
T ss_pred             ccccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCC-------CCCccCCHHHHHHHHHHhCCC-CCeECC-
Confidence            34456679998666999999999999999999988899995  5       888888888888888888887 667777 


Q ss_pred             cccchhcCChHHHHHHHHhcCC
Q psy11068        128 KNCNKRFTTLSNLKMHMVRHGK  149 (292)
Q Consensus       128 ~~C~~~f~~~~~l~~H~~~h~~  149 (292)
                       +|++.|.....|..|+++|.+
T Consensus        80 -~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           80 -VCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             -SSCCBCSSHHHHHHHHHHHCC
T ss_pred             -CCcCccCCHHHHHHHHHHhCC
Confidence             788888888888888888753

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.70  E-value=1.5e-17  Score=104.47  Aligned_cols=58  Identities=31%  Similarity=0.745  Sum_probs=50.8

Q ss_pred             CCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCC
Q psy11068        181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK  242 (292)
Q Consensus       181 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~  242 (292)
                      ++||.|..  ||+.|...+.|..|+++| ++++||.|.+|+++|...+.|..|++ +|+++.
T Consensus         2 EKpy~C~~--C~k~F~~~~~L~~H~~~H-t~ekp~~C~~C~k~F~~~~~L~~H~~-~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNF--CGKTYRDASGLSRHRRAH-LGYRPRSCPECGKCFRDQSEVNRHLK-VHQNKP   59 (60)
T ss_dssp             CCCEECTT--TCCEESSHHHHHHHHHHH-HTCCCEECTTTCCEESSHHHHHHHGG-GGSCC-
T ss_pred             CCCccCCC--CCCEeCCHHHHHHHHHHh-CCCcCeECCCCCCCcCCHHHHHHHhC-ccCCCC
Confidence            68899987  999999999999999998 67789999999999999999999988 898864

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.70  E-value=3.6e-18  Score=117.13  Aligned_cols=82  Identities=21%  Similarity=0.392  Sum_probs=67.2

Q ss_pred             CCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHH
Q psy11068        181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSA  260 (292)
Q Consensus       181 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~  260 (292)
                      ++||.|..  |++.|.....|..|+++| .++++|.|..|++.|.....|..|++ +|.+ .+|.|..  |++.|.+...
T Consensus         1 ek~~~C~~--C~k~f~~~~~L~~H~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~h~~-~~~~c~~--C~~~f~~~~~   73 (88)
T 1llm_C            1 MKPFQCRI--CMRNFSRSDHLTTHIRTH-TGEKPFACDICGRKFARSDERKRHRD-IQHI-LPILEDK--VEELLSKNYH   73 (88)
T ss_dssp             CCCEECTT--TCCEESCHHHHHHHHHHH-HCCCCEECTTTCCEESSHHHHHHHHH-HHTH-HHHHHHH--HHHHHHHHHH
T ss_pred             CCCCcCCC--CCCccCCHHHHHHHHHHc-CCCCCccCCCCCCccCCHHHHHHHHH-HhCC-CcchHHH--HHHHHHHHhh
Confidence            46788877  888888888888888888 56678888888888888888888888 4543 7788876  8888888888


Q ss_pred             HHhHhhhhc
Q psy11068        261 LKRHNKSKH  269 (292)
Q Consensus       261 l~~H~~~~H  269 (292)
                      |..|++..|
T Consensus        74 L~~H~~~~h   82 (88)
T 1llm_C           74 LENEVARLK   82 (88)
T ss_dssp             HHHHHHHHH
T ss_pred             hHHHHHHHH
Confidence            888888655

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=2.8e-17  Score=112.05  Aligned_cols=80  Identities=25%  Similarity=0.434  Sum_probs=55.7

Q ss_pred             HHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCC---CcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCC
Q psy11068        201 LKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHEST---KNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPC  277 (292)
Q Consensus       201 l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~---~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  277 (292)
                      |.+|+++| .++++|.|.+|++.|.....|..|++..|...   ++|.|.+  |++.|.+...|..|++ .|.+++++.|
T Consensus         3 ~~~H~~~H-~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~--C~~~f~~~~~L~~H~~-~h~~~~~~~~   78 (86)
T 1x6h_A            3 SGSSGRTH-TGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSK--CGKTFTRRNTMARHAD-NCAGPDGVEG   78 (86)
T ss_dssp             TTCCSTTC-CCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSS--SCCEESCHHHHHHHHH-HCCCCCSCCC
T ss_pred             ccccccee-cCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCC--CCChhCCHHHHHHHHH-HccCCCCccc
Confidence            45566666 55677777777777777777777776334332   6777766  7777777777777777 5777777777


Q ss_pred             CCccCCccc
Q psy11068        278 PLVTCGKSF  286 (292)
Q Consensus       278 ~~~~C~~~f  286 (292)
                      ..  |+.+|
T Consensus        79 ~~--~~~~~   85 (86)
T 1x6h_A           79 EN--SGPSS   85 (86)
T ss_dssp             CC--CCCCC
T ss_pred             CC--CCCCC
Confidence            76  77665

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=1.4e-16  Score=106.80  Aligned_cols=72  Identities=31%  Similarity=0.693  Sum_probs=65.3

Q ss_pred             CCceeCCCCCCCcccCCHHHHHHHHH-HhcCCCCCcccCC--CcccccChhHHHHHHHHhcCCCCcccCCcCCcccccc
Q psy11068        181 SAPYMCDYKGCGKSFYLMASLKSHQR-VHVTNPEDLVCKG--CGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFS  256 (292)
Q Consensus       181 ~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~  256 (292)
                      +++|.|..+.|++.|.+...|..|++ .| .++++|.|.+  |++.|.....|..|++ +|.+++||.|.+  |+++|.
T Consensus         5 ~~~~~C~~~~C~~~f~~~~~L~~H~~~~H-~~~~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~--C~k~F~   79 (79)
T 2dlk_A            5 SSGMPCDFPGCGRIFSNRQYLNHHKKYQH-IHQKSFSCPEPACGKSFNFKKHLKEHMK-LHSDTRDYICEF--SGPSSG   79 (79)
T ss_dssp             CSSEECSSTTTCCEESSHHHHHHHHHHGG-GSCCCEECSCTTTCCEESSHHHHHHHHH-HHHTSCCCSCCS--SSCCCC
T ss_pred             CCCccCCCCCCcCccCCHHHHHHHHHHHh-CCCCCeECCCCCCcCccCCHHHHHHHHH-HhCCCCCeeCCC--CCCCCC
Confidence            78899987779999999999999999 56 7779999998  9999999999999998 899999999987  999984

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.65  E-value=1.9e-16  Score=107.51  Aligned_cols=78  Identities=36%  Similarity=0.688  Sum_probs=59.8

Q ss_pred             ceeC--CCCCCCcccCCHHHHHHHHHHhcCCCCCcccCC--CcccccChhHHHHHHHHhcCCCCcccCCcCC-ccccccC
Q psy11068        183 PYMC--DYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKG--CGKQFKVPCRLREHYKAVHESTKNFKCTYDG-CKLLFST  257 (292)
Q Consensus       183 ~~~C--~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~-C~~~f~~  257 (292)
                      ||.|  ..  |++.|.....|..|+++| .++++|.|+.  |++.|.....|..|++ +|.+   |.|.... |++.|.+
T Consensus         1 p~~C~~~~--C~~~f~~~~~l~~H~~~h-~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~---~~C~~~~~C~~~f~~   73 (85)
T 2j7j_A            1 MYVCHFEN--CGKAFKKHNQLKVHQFSH-TQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAG---YPCKKDDSCSFVGKT   73 (85)
T ss_dssp             CEECCSTT--CCCEESSHHHHHHHHHHH-HTTCCEECCSTTCCCEESSHHHHHHHHH-HHHS---EECCSCSSCCCEESS
T ss_pred             CccCCCCC--CCcccCCHHHHHHHHHHh-CCCCCeeCCCCCCcCccCCHHHHHHHHH-HhCC---CCCCCCCCCCCccCC
Confidence            5778  55  888888888888888887 4567888877  8888888888888877 6766   8884222 8888888


Q ss_pred             HHHHHhHhhh
Q psy11068        258 KSALKRHNKS  267 (292)
Q Consensus       258 ~~~l~~H~~~  267 (292)
                      ...|..|++.
T Consensus        74 ~~~l~~H~~~   83 (85)
T 2j7j_A           74 WTLYLKHVAE   83 (85)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8888888874

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=1e-16  Score=109.17  Aligned_cols=81  Identities=20%  Similarity=0.336  Sum_probs=68.3

Q ss_pred             HHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCC---CCcccCCCcccccChhHHHHHHHHhcCCCCccc
Q psy11068        169 QYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNP---EDLVCKGCGKQFKVPCRLREHYKAVHESTKNFK  245 (292)
Q Consensus       169 ~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~---~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~  245 (292)
                      +|..|+++|.+ +++|.|..  |++.|.....|..|++.|+...   ++|.|..|++.|.....|..|++ +|.+++++.
T Consensus         2 s~~~H~~~H~~-~k~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~-~h~~~~~~~   77 (86)
T 1x6h_A            2 SSGSSGRTHTG-EKPYACSH--CDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD-NCAGPDGVE   77 (86)
T ss_dssp             TTTCCSTTCCC-CCCEECSS--SSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHH-HCCCCCSCC
T ss_pred             CcccccceecC-CCCCcCCC--CCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHH-HccCCCCcc
Confidence            35678888887 78899987  9999999999999988876553   78999999999999999999988 888999999


Q ss_pred             CCcCCccccc
Q psy11068        246 CTYDGCKLLF  255 (292)
Q Consensus       246 C~~~~C~~~f  255 (292)
                      |..  |+.+|
T Consensus        78 ~~~--~~~~~   85 (86)
T 1x6h_A           78 GEN--SGPSS   85 (86)
T ss_dssp             CCC--CCCCC
T ss_pred             cCC--CCCCC
Confidence            976  88765

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.65  E-value=2.5e-17  Score=112.88  Aligned_cols=83  Identities=19%  Similarity=0.445  Sum_probs=74.6

Q ss_pred             CCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhH
Q psy11068        150 PLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCR  229 (292)
Q Consensus       150 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~  229 (292)
                      +++|.|.+  |++.|.+...|..|++.|.+ ++||.|..  |++.|.....|..|+++|+.  .+|.|..|++.|.....
T Consensus         1 ek~~~C~~--C~k~f~~~~~L~~H~~~H~~-~~~~~C~~--C~k~f~~~~~L~~H~~~h~~--~~~~c~~C~~~f~~~~~   73 (88)
T 1llm_C            1 MKPFQCRI--CMRNFSRSDHLTTHIRTHTG-EKPFACDI--CGRKFARSDERKRHRDIQHI--LPILEDKVEELLSKNYH   73 (88)
T ss_dssp             CCCEECTT--TCCEESCHHHHHHHHHHHHC-CCCEECTT--TCCEESSHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCC--CCCccCCHHHHHHHHHHcCC-CCCccCCC--CCCccCCHHHHHHHHHHhCC--CcchHHHHHHHHHHHhh
Confidence            46899999  99999999999999999987 88999988  99999999999999999963  68999999999999999


Q ss_pred             HHHHHHHhcC
Q psy11068        230 LREHYKAVHE  239 (292)
Q Consensus       230 L~~H~~~~H~  239 (292)
                      |..|++..|.
T Consensus        74 L~~H~~~~h~   83 (88)
T 1llm_C           74 LENEVARLKK   83 (88)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHHHHHH
Confidence            9999987763

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=9.1e-17  Score=112.34  Aligned_cols=67  Identities=22%  Similarity=0.278  Sum_probs=47.9

Q ss_pred             CCCCCcccCCCcccccChhHHHHHHHHhc---CCCCcccCCcCCccccccCHHHHHhH-hhhhcCCCCcCCCCC
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHYKAVH---ESTKNFKCTYDGCKLLFSTKSALKRH-NKSKHLNMRMFPCPL  279 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H---~~~~~~~C~~~~C~~~f~~~~~l~~H-~~~~H~~~~~~~C~~  279 (292)
                      .+++||.|..|++.|..+..|..|++++|   .+++||.|..  |+++|.++..|..| ++ .|++++||.|.+
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~--Cgk~F~~~~~L~~H~~r-~Htgekpy~C~~   84 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVE--CNFLTKRYDALSEHNLK-YHPGEENFKLTM   84 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETT--TTEEESSTHHHHTHHHH-TSTTCCCEEEEE
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCC--CCcccCCHHHHHHHHHH-hcCCCCCeeCCc
Confidence            45667777777777777777777776457   4567777765  77777777777777 55 677777777765

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=2.7e-16  Score=104.85  Aligned_cols=64  Identities=27%  Similarity=0.496  Sum_probs=56.1

Q ss_pred             CCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCC
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPC  277 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  277 (292)
                      .++++|.|.+|++.|.....|..|++ +|.+++||.|.+  |++.|.+...|..|++ .|.+++||.|
T Consensus        14 ~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~L~~H~~-~H~~~~p~~C   77 (77)
T 2cot_A           14 RERRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDE--CGKAFIQRSHLIGHHR-VHTGSGPSSG   77 (77)
T ss_dssp             CCSCSSBCSSSCCBCSCHHHHHHHHT-TTCCSCSEECSS--SCCEESSHHHHHHHGG-GSCCCCCCCC
T ss_pred             CCCCCEECCCCCcccCCHHHHHHHHH-HcCCCcCeeCCC--CCCccCCHHHHHHHHH-HhCCCCCCCC
Confidence            45688999999999999999999988 788889999977  9999999999999998 6889999887

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.63  E-value=3.3e-17  Score=120.68  Aligned_cols=81  Identities=17%  Similarity=0.235  Sum_probs=60.4

Q ss_pred             CceeCCCCCCCccc------CCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccc
Q psy11068        182 APYMCDYKGCGKSF------YLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLF  255 (292)
Q Consensus       182 ~~~~C~~~~C~~~f------~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f  255 (292)
                      +++.|++  |.+.|      .....|..|+ .| .+++||.|.+|++.|.....|..|++ +|  ++||.|++  |++.|
T Consensus        40 ~~~~c~~--~~~~~~~~~~~~~~~~l~~h~-~h-~~~~~~~C~~C~k~f~~~~~l~~H~~-~H--~~~~~C~~--C~k~f  110 (129)
T 2wbt_A           40 KRLIRAI--VKTLIHNPQLLDESSYLYRLL-AS-KAISQFVCPLCLMPFSSSVSLKQHIR-YT--EHTKVCPV--CKKEF  110 (129)
T ss_dssp             HHHHHHH--HHHHHHCGGGTTTHHHHHHHH-HH-HHHCSEECTTTCCEESSHHHHHHHHH-HT--CCCCBCTT--TCCBC
T ss_pred             Ccccchh--hhcccCCCcccCCHHHHHHHH-Hh-CCCCCeECCCCCcccCCHhHHHHHHH-HC--CCCCCCCC--CCccc
Confidence            4455554  54444      4667777777 45 44688888888888888888888887 78  78888877  88888


Q ss_pred             cCHHHHHhHhhhhcCCC
Q psy11068        256 STKSALKRHNKSKHLNM  272 (292)
Q Consensus       256 ~~~~~l~~H~~~~H~~~  272 (292)
                      .+...|..|++ .|.+.
T Consensus       111 ~~~~~l~~H~~-~h~~~  126 (129)
T 2wbt_A          111 TSTDSALDHVC-KKHNI  126 (129)
T ss_dssp             SSHHHHHHHHH-HTTCC
T ss_pred             CCHHHHHHHHH-HHCCc
Confidence            88888888888 46554

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.62  E-value=8.2e-16  Score=104.34  Aligned_cols=79  Identities=33%  Similarity=0.602  Sum_probs=68.7

Q ss_pred             cccc--cccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCC---CcccccC
Q psy11068        152 TLCC--EELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKG---CGKQFKV  226 (292)
Q Consensus       152 ~~~C--~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~---C~~~f~~  226 (292)
                      +|.|  ..  |++.|.+...|..|++.|.+ +++|.|..++|++.|.....|..|+++|++    |.|..   |++.|..
T Consensus         1 p~~C~~~~--C~~~f~~~~~l~~H~~~h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~----~~C~~~~~C~~~f~~   73 (85)
T 2j7j_A            1 MYVCHFEN--CGKAFKKHNQLKVHQFSHTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAG----YPCKKDDSCSFVGKT   73 (85)
T ss_dssp             CEECCSTT--CCCEESSHHHHHHHHHHHHT-TCCEECCSTTCCCEESSHHHHHHHHHHHHS----EECCSCSSCCCEESS
T ss_pred             CccCCCCC--CCcccCCHHHHHHHHHHhCC-CCCeeCCCCCCcCccCCHHHHHHHHHHhCC----CCCCCCCCCCCccCC
Confidence            4788  77  99999999999999999987 789999654599999999999999999854    99999   9999999


Q ss_pred             hhHHHHHHHHhc
Q psy11068        227 PCRLREHYKAVH  238 (292)
Q Consensus       227 ~~~L~~H~~~~H  238 (292)
                      ...|..|++ +|
T Consensus        74 ~~~l~~H~~-~h   84 (85)
T 2j7j_A           74 WTLYLKHVA-EC   84 (85)
T ss_dssp             HHHHHHHHH-HC
T ss_pred             HHHHHHHHH-hc
Confidence            999999988 44

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=8.2e-16  Score=106.81  Aligned_cols=80  Identities=15%  Similarity=0.198  Sum_probs=65.7

Q ss_pred             CcccCCHHHHHHHHHHhcCCCCCcccCCCcccc-cChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhH-hhhhc
Q psy11068        192 GKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQF-KVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRH-NKSKH  269 (292)
Q Consensus       192 ~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f-~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H-~~~~H  269 (292)
                      ..+|.....|..|++.| .++++|.|++|++.| .....|..|++ +| +++||.|.+  |++.|.++..|..| ++ .|
T Consensus        13 ~~~~~~~~~~~~~~~~~-~~~~~~~C~~C~k~F~~~~~~L~~H~~-~h-~~k~~~C~~--Cgk~F~~~~~L~~H~~~-~H   86 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYLEI-VDKGSVSCPTCQAVGRKTIEGLKKHME-NC-KQEMFTCHH--CGKQLRSLAGMKYHVMA-NH   86 (96)
T ss_dssp             CCSSCTTCHHHHHHHHH-HHTSCEECTTTCSCEESSHHHHHHHHH-HH-CCCCCCCSS--SCCCCSSHHHHHHHHHH-HT
T ss_pred             CCCCCCchHHHHHHHHh-cCCCCcCCCCCCCCcccCHHHHHHHHH-HH-CCCCeECCC--CCCeeCCHHHHHHHhHH-hc
Confidence            45677778888888888 456889999999999 89999999988 78 889999977  99999999999999 66 78


Q ss_pred             CCCCcCCC
Q psy11068        270 LNMRMFPC  277 (292)
Q Consensus       270 ~~~~~~~C  277 (292)
                      +++..|.+
T Consensus        87 ~~~p~~~~   94 (96)
T 2ctd_A           87 NSLPSGPS   94 (96)
T ss_dssp             CCCSSCSC
T ss_pred             CCCCCCCC
Confidence            77655544

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=1.5e-16  Score=111.25  Aligned_cols=81  Identities=20%  Similarity=0.300  Sum_probs=65.7

Q ss_pred             cccCCHHHHHHHHHHhcCCCCCcccCCCccccc-ChhHHHHHHHHhcCC-CCcccCCcCCccccccCHHHHHhHhhhhcC
Q psy11068        193 KSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFK-VPCRLREHYKAVHES-TKNFKCTYDGCKLLFSTKSALKRHNKSKHL  270 (292)
Q Consensus       193 ~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~-~~~~L~~H~~~~H~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~  270 (292)
                      ..+.....+..|+++| .++++|.|.+|++.|. ....|..|++ +|.+ +++|.|.+  |++.|.++..|..|++ .|.
T Consensus         4 ~s~~~~~~~~~h~~~h-~~~~~~~C~~C~k~f~~~~~~L~~H~~-~h~~~~~~~~C~~--C~k~F~~~~~L~~H~~-~h~   78 (98)
T 2gqj_A            4 GSSGPGGPEEQWQRAI-HERGEAVCPTCNVVTRKTLVGLKKHME-VCQKLQDALKCQH--CRKQFKSKAGLNYHTM-AEH   78 (98)
T ss_dssp             CCCCCCCSCSHHHHTT-TTTSCCCCTTTCCCCSSCSHHHHHHHH-HHHHHHHHHSCSS--SCCCCSCHHHHHHHHH-HHS
T ss_pred             CCCCCCCcHHHHHHHh-ccCCCcCCCCCCCChhhhHHHHHHHHH-HHcCCCCCEECCC--CCCccCCHHHHHHHHH-HHc
Confidence            3455556677888888 6678899999999998 8889999988 7777 88899977  9999999999999988 677


Q ss_pred             CCCcCCCC
Q psy11068        271 NMRMFPCP  278 (292)
Q Consensus       271 ~~~~~~C~  278 (292)
                      +++|+.-.
T Consensus        79 ~~kp~~~~   86 (98)
T 2gqj_A           79 SAKPSDAE   86 (98)
T ss_dssp             CSCSSCCC
T ss_pred             CCCCCCCC
Confidence            88876654

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=1.8e-16  Score=105.68  Aligned_cols=72  Identities=22%  Similarity=0.371  Sum_probs=53.1

Q ss_pred             HHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCC-CcccCCcCCccccccCHHHHHhHhhhhcCCCCcC
Q psy11068        201 LKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHEST-KNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMF  275 (292)
Q Consensus       201 l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~-~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~  275 (292)
                      |.+|+++| .+++||.|.+|++.|.....|..|++..|.+. ++|+|++  |++.|.+...|..|++.+|..+.|.
T Consensus         3 ~~~H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~~p~   75 (77)
T 2ct1_A            3 SGSSGRTH-SGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIARKSDLGVHLRKQHSYSGPS   75 (77)
T ss_dssp             CCCCCCCC-SCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSS--SSCEESSHHHHHHHHHHTSCCSCCC
T ss_pred             CCcccccc-CCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCC--CCCccCCHHHHHHHHHHhCCCCCCC
Confidence            34566777 56677888888888888888888876567664 7788866  8888888888888887667666654

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.60  E-value=1.3e-15  Score=100.62  Aligned_cols=62  Identities=24%  Similarity=0.550  Sum_probs=51.3

Q ss_pred             CCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcC
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMF  275 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~  275 (292)
                      .++++|.|..|++.|.....|..|++ +|.++++|+|.+  |++.|.+...|.+|++ .|.+++||
T Consensus        13 ~~~~~~~C~~C~k~f~~~~~l~~H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~-~H~~~kp~   74 (74)
T 2lce_A           13 HSDKPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNI--CGAQFNRPANLKTHTR-IHSGEKPY   74 (74)
T ss_dssp             CCCCSBCCTTSSCCBSCHHHHHHHHH-HHCCCCSEECTT--TCCEESCHHHHHHHHH-HHCCSCCC
T ss_pred             CCCCCeECCCCCceeCCHHHHHHHHH-HcCCCCCEECCC--CCchhCCHHHHHHHHH-hcCCCCCC
Confidence            55678888888888888888888887 788888888877  8888888888888888 68888876

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.59  E-value=1.7e-15  Score=102.12  Aligned_cols=61  Identities=25%  Similarity=0.523  Sum_probs=50.9

Q ss_pred             CCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCC
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMR  273 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~  273 (292)
                      ...++|.|++|++.|..+..|.+|++ +|.+++||.|.+  |+++|.++..|.+|++..|++|.
T Consensus        24 ~~~~~h~C~~Cgk~F~~~~~L~~H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           24 ASAECHLCPVCGESFASKGAQERHLR-LLHAAQVFPCKY--CPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CCCTTEECTTSCCEESSHHHHHHHHH-TTSCSSSEECTT--SSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCEECCCCCCCcCcHHHHhhhhh-hccCCCccCCCC--CCCEeCCHHHHHHhCcccCcCCC
Confidence            44567888888888888888888888 788888888877  88888888888888866788764

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=2.5e-15  Score=104.99  Aligned_cols=66  Identities=30%  Similarity=0.403  Sum_probs=58.6

Q ss_pred             CCCceeCCCCCCCcccCCHHHHHHHHHH-hc--CCCCCcccCCCcccccChhHHHHH-HHHhcCCCCcccCCc
Q psy11068        180 VSAPYMCDYKGCGKSFYLMASLKSHQRV-HV--TNPEDLVCKGCGKQFKVPCRLREH-YKAVHESTKNFKCTY  248 (292)
Q Consensus       180 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~--~~~~~~~C~~C~~~f~~~~~L~~H-~~~~H~~~~~~~C~~  248 (292)
                      +++||.|..  |++.|...+.|..|++. |.  .+++||.|.+|++.|.....|..| ++ +|++++||.|.+
T Consensus        15 gekpy~C~~--Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r-~Htgekpy~C~~   84 (102)
T 2ghf_A           15 VEGGYECKY--CTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLK-YHPGEENFKLTM   84 (102)
T ss_dssp             CCSSEECSS--CSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHH-TSTTCCCEEEEE
T ss_pred             CCcCcCCCC--CCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHH-hcCCCCCeeCCc
Confidence            488999988  99999999999999985 52  357899999999999999999999 66 899999999976

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=3.4e-15  Score=99.40  Aligned_cols=62  Identities=35%  Similarity=0.624  Sum_probs=55.6

Q ss_pred             CCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccC
Q psy11068        181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  246 (292)
Q Consensus       181 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C  246 (292)
                      +++|.|..  |++.|.....|..|+++| .++++|.|.+|++.|.....|..|++ +|.+++||+|
T Consensus        16 ~~~~~C~~--C~~~f~~~~~l~~H~~~h-~~~~~~~C~~C~~~f~~~~~L~~H~~-~H~~~~p~~C   77 (77)
T 2cot_A           16 RRRYKCDE--CGKSFSHSSDLSKHRRTH-TGEKPYKCDECGKAFIQRSHLIGHHR-VHTGSGPSSG   77 (77)
T ss_dssp             SCSSBCSS--SCCBCSCHHHHHHHHTTT-CCSCSEECSSSCCEESSHHHHHHHGG-GSCCCCCCCC
T ss_pred             CCCEECCC--CCcccCCHHHHHHHHHHc-CCCcCeeCCCCCCccCCHHHHHHHHH-HhCCCCCCCC
Confidence            78899987  999999999999999988 66788999999999999999999988 8999999987

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=8.5e-15  Score=101.65  Aligned_cols=80  Identities=19%  Similarity=0.255  Sum_probs=60.0

Q ss_pred             chhccChHHHHHHHhhhcCCCCceeCCCCCCCccc-CCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHH-HHHhc
Q psy11068        161 GRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSF-YLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREH-YKAVH  238 (292)
Q Consensus       161 ~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f-~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H-~~~~H  238 (292)
                      ...|.....|..|++.+.+ +++|.|..  |++.| .....|..|+++|  ++++|.|.+|++.|.....|..| ++ +|
T Consensus        13 ~~~~~~~~~~~~~~~~~~~-~~~~~C~~--C~k~F~~~~~~L~~H~~~h--~~k~~~C~~Cgk~F~~~~~L~~H~~~-~H   86 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYLEIVD-KGSVSCPT--CQAVGRKTIEGLKKHMENC--KQEMFTCHHCGKQLRSLAGMKYHVMA-NH   86 (96)
T ss_dssp             CCSSCTTCHHHHHHHHHHH-TSCEECTT--TCSCEESSHHHHHHHHHHH--CCCCCCCSSSCCCCSSHHHHHHHHHH-HT
T ss_pred             CCCCCCchHHHHHHHHhcC-CCCcCCCC--CCCCcccCHHHHHHHHHHH--CCCCeECCCCCCeeCCHHHHHHHhHH-hc
Confidence            3456666777777777776 77888876  88888 7888888888887  56788888888888888888888 55 78


Q ss_pred             CCCCcccC
Q psy11068        239 ESTKNFKC  246 (292)
Q Consensus       239 ~~~~~~~C  246 (292)
                      +++..|.+
T Consensus        87 ~~~p~~~~   94 (96)
T 2ctd_A           87 NSLPSGPS   94 (96)
T ss_dssp             CCCSSCSC
T ss_pred             CCCCCCCC
Confidence            76554443

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=7.7e-16  Score=107.60  Aligned_cols=81  Identities=21%  Similarity=0.256  Sum_probs=65.0

Q ss_pred             hhccChHHHHHHHhhhcCCCCceeCCCCCCCcccC-CHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCC
Q psy11068        162 RKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFY-LMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHES  240 (292)
Q Consensus       162 ~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~-~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~  240 (292)
                      .++.....+..|++.|.+ +++|.|..  |++.|. ....|..|+++|+..+++|.|.+|++.|.....|..|++ +|.+
T Consensus         4 ~s~~~~~~~~~h~~~h~~-~~~~~C~~--C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~-~h~~   79 (98)
T 2gqj_A            4 GSSGPGGPEEQWQRAIHE-RGEAVCPT--CNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM-AEHS   79 (98)
T ss_dssp             CCCCCCCSCSHHHHTTTT-TSCCCCTT--TCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHH-HHSC
T ss_pred             CCCCCCCcHHHHHHHhcc-CCCcCCCC--CCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHH-HHcC
Confidence            345556667788888886 78899987  999998 888899999888543678999999999999999999988 7778


Q ss_pred             CCcccC
Q psy11068        241 TKNFKC  246 (292)
Q Consensus       241 ~~~~~C  246 (292)
                      ++|+.-
T Consensus        80 ~kp~~~   85 (98)
T 2gqj_A           80 AKPSDA   85 (98)
T ss_dssp             SCSSCC
T ss_pred             CCCCCC
Confidence            777654

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=6.8e-15  Score=96.01  Aligned_cols=63  Identities=27%  Similarity=0.458  Sum_probs=49.5

Q ss_pred             CCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCC
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFP  276 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~  276 (292)
                      .++++|.|.+|++.|.....|..|++ +|.++++|.|.+  |++.|.+...|..|++ .|.+++|..
T Consensus         5 ~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~--C~~~f~~~~~L~~H~~-~h~~~~p~p   67 (70)
T 1x5w_A            5 SSGHPEKCSECSYSCSSKAALRIHER-IHCTDRPFKCNY--CSFDTKQPSNLSKHMK-KFHGDMSGP   67 (70)
T ss_dssp             CCCCSEECSSSSCEESSHHHHHHHHG-GGCCSCSEECSS--SSCEESSHHHHHHHHH-HHHSSSCCS
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHH-HcCCCCCEeCCC--CCCccCCHHHHHHHHH-HHhCCCCCC
Confidence            56678888888888888888888877 688888888876  8888888888888887 577776643

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.53  E-value=2.7e-15  Score=110.34  Aligned_cols=68  Identities=22%  Similarity=0.324  Sum_probs=51.6

Q ss_pred             ChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCC
Q psy11068        166 TMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHEST  241 (292)
Q Consensus       166 ~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~  241 (292)
                      ....|..|+ .|++ ++||.|..  |++.|.....|..|+++|   ++||.|..|++.|.....|..|++ +|.+.
T Consensus        59 ~~~~l~~h~-~h~~-~~~~~C~~--C~k~f~~~~~l~~H~~~H---~~~~~C~~C~k~f~~~~~l~~H~~-~h~~~  126 (129)
T 2wbt_A           59 ESSYLYRLL-ASKA-ISQFVCPL--CLMPFSSSVSLKQHIRYT---EHTKVCPVCKKEFTSTDSALDHVC-KKHNI  126 (129)
T ss_dssp             THHHHHHHH-HHHH-HCSEECTT--TCCEESSHHHHHHHHHHT---CCCCBCTTTCCBCSSHHHHHHHHH-HTTCC
T ss_pred             CHHHHHHHH-HhCC-CCCeECCC--CCcccCCHhHHHHHHHHC---CCCCCCCCCCcccCCHHHHHHHHH-HHCCc
Confidence            455555565 4665 78888877  888888888888888887   467888888888888888888887 56553

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=4.8e-15  Score=98.67  Aligned_cols=71  Identities=21%  Similarity=0.360  Sum_probs=53.2

Q ss_pred             HHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCC-CCCcccCCCcccccChhHHHHHHHHhcCCCCc
Q psy11068        170 YSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTN-PEDLVCKGCGKQFKVPCRLREHYKAVHESTKN  243 (292)
Q Consensus       170 l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~  243 (292)
                      |..|+++|.+ ++||.|..  |++.|.....|..|++.+|.+ .++|.|.+|++.|.....|..|+++.|..+.|
T Consensus         3 ~~~H~~~H~~-~k~~~C~~--C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p   74 (77)
T 2ct1_A            3 SGSSGRTHSG-EKPYECYI--CHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGP   74 (77)
T ss_dssp             CCCCCCCCSC-CCSEECTT--TCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCC
T ss_pred             CCccccccCC-CCCeECCC--cCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            3457777776 78888877  888888888888888743354 37888888888888888888888866766655

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.52  E-value=2e-14  Score=94.86  Aligned_cols=60  Identities=38%  Similarity=0.790  Sum_probs=52.8

Q ss_pred             CCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcc
Q psy11068        181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNF  244 (292)
Q Consensus       181 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~  244 (292)
                      +++|.|..  |++.|.....|..|+++| .++++|.|.+|++.|.....|..|++ +|.+++||
T Consensus        15 ~~~~~C~~--C~k~f~~~~~l~~H~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~kp~   74 (74)
T 2lce_A           15 DKPYKCDR--CQASFRYKGNLASHKTVH-TGEKPYRCNICGAQFNRPANLKTHTR-IHSGEKPY   74 (74)
T ss_dssp             CCSBCCTT--SSCCBSCHHHHHHHHHHH-CCCCSEECTTTCCEESCHHHHHHHHH-HHCCSCCC
T ss_pred             CCCeECCC--CCceeCCHHHHHHHHHHc-CCCCCEECCCCCchhCCHHHHHHHHH-hcCCCCCC
Confidence            78899987  999999999999999988 66788999999999999999999988 89888886

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=1.3e-14  Score=95.27  Aligned_cols=62  Identities=32%  Similarity=0.591  Sum_probs=48.4

Q ss_pred             HhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCC
Q psy11068        207 VHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMR  273 (292)
Q Consensus       207 ~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~  273 (292)
                      +| .++++|.|.+|++.|.....|..|++ +|.+++||.|++  |++.|.+...|..|++ .|.++.
T Consensus         8 ~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~~~C~~--C~~~f~~~~~L~~H~~-~H~~~~   69 (72)
T 1x6e_A            8 IH-SGEKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLE--CGKAFSQNSGLINHQR-IHTSGP   69 (72)
T ss_dssp             TT-TTCCCEECSSSCCEESSHHHHHHHHH-GGGCSCCEECSS--SCCEESSHHHHHHHHH-HHHSSS
T ss_pred             cc-CCCCCccCCCCCCccCCHHHHHHHHH-hcCCCCCeECCC--CCcccCCHHHHHHHHH-hcCCCC
Confidence            44 56678888888888888888888877 788888888876  8888888888888887 566553

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=1.5e-14  Score=96.44  Aligned_cols=66  Identities=21%  Similarity=0.468  Sum_probs=48.9

Q ss_pred             CCCCCcccCCCcccccChhHHHHHHHHhcCC---CCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCC
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHYKAVHES---TKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCP  278 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~---~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  278 (292)
                      .++++|.|.+|++.|.....|..|++ +|.+   +++|.|.+  |++.|.+...|..|++..|.++++..-.
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~~~~~~C~~--C~k~f~~~~~L~~H~~~~H~~~~~~~~~   71 (78)
T 2d9h_A            3 SGSSGLQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEF--CGKRFEKPDSVAAHRSKSHPALLLAPQE   71 (78)
T ss_dssp             CSCCCEECSSSCCEESSHHHHHHHHH-HHHHHTTTCCEECTT--TCCEESSHHHHHHHHHHTSTTTSSCCSS
T ss_pred             CCCcCeECCCCCCeeCCHHHHHHHHH-HhhccCCCcccCCCC--CCchhCCHHHHHHHHHHhCCCCCCCccc
Confidence            56677778888888877777877777 6664   67788866  8888888888888876577777766554

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.50  E-value=1.8e-14  Score=97.07  Aligned_cols=59  Identities=25%  Similarity=0.444  Sum_probs=51.8

Q ss_pred             CCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCC
Q psy11068        181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK  242 (292)
Q Consensus       181 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~  242 (292)
                      .++|.|++  |++.|.....|.+|+++| .+++||.|.+|+++|.....|.+|++.+|+++.
T Consensus        26 ~~~h~C~~--Cgk~F~~~~~L~~H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           26 AECHLCPV--CGESFASKGAQERHLRLL-HAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CTTEECTT--SCCEESSHHHHHHHHHTT-SCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCEECCC--CCCCcCcHHHHhhhhhhc-cCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            67899987  999999999999999998 567899999999999999999999877898764

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.49  E-value=2.2e-14  Score=89.50  Aligned_cols=53  Identities=28%  Similarity=0.613  Sum_probs=40.2

Q ss_pred             CCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhh
Q psy11068        212 PEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKS  267 (292)
Q Consensus       212 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~  267 (292)
                      +++|.|.+|++.|.....|..|++ +|.+++||.|++  |++.|.+...|..|++.
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~   54 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLR-THTGEKPYKCEF--CEYAAAQKTSLRYHLER   54 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHH-HHHCCCCEECSS--SSCEESSHHHHHHHHHH
T ss_pred             CCCccCCCCcchhCChHHHHHHHH-HcCCCCCcCCCC--CcchhCCHHHHHHHHHH
Confidence            467888888888888888888877 787888888866  88888888888888874

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=3.9e-14  Score=89.33  Aligned_cols=57  Identities=28%  Similarity=0.645  Sum_probs=47.3

Q ss_pred             CCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        213 EDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       213 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      +||.|..|++.|.....|..|++ +|.+++||.|++  |++.|.+...|..|++..|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHH-TTTSSCSEECTT--TCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHH-HhCCCCCccCCC--CCCccCCHHHHHHHHHHHcCCc
Confidence            47888888888888888888887 788888888877  8888888888888875478765

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.48  E-value=4.8e-14  Score=87.89  Aligned_cols=56  Identities=32%  Similarity=0.793  Sum_probs=46.1

Q ss_pred             CcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCC
Q psy11068        214 DLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMR  273 (292)
Q Consensus       214 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~  273 (292)
                      ||.|..|++.|.....|..|++ +|.+++||.|++  |++.|.+...|..|++ .|.+++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIR-THTDVRPYHCTY--CNFSFKTKGNLTKHMK-SKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH-HTSSCCCEECSS--SSCEESSHHHHHHHHH-SSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHH-hcCCCCCccCCC--CCchhcCHHHHHHHHH-HhcccC
Confidence            5788888888888888888887 788888888877  8888888888888888 576654

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=1.8e-14  Score=92.79  Aligned_cols=58  Identities=24%  Similarity=0.527  Sum_probs=44.1

Q ss_pred             CCCCCcccCCCcccccChhHHHHHHHHhc-CCCCcccCCcCCccccccCHHHHHhHhhhhc
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHYKAVH-ESTKNFKCTYDGCKLLFSTKSALKRHNKSKH  269 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H-~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H  269 (292)
                      .+++||.|+.|++.|.....|..|++..| .+++||.|++  |++.|.+...|..|++.+|
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~--C~k~f~~~~~L~~H~~~~H   64 (66)
T 2drp_A            6 EGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAHVKIIH   64 (66)
T ss_dssp             EETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTT--TCCEESCHHHHHHHHHHHT
T ss_pred             CCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCC--CCCccCCHHHHHHHHHHHc
Confidence            56677888888888888888888877447 5778888866  8888888888888887433

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=8.5e-14  Score=90.71  Aligned_cols=60  Identities=27%  Similarity=0.445  Sum_probs=49.0

Q ss_pred             CCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcc
Q psy11068        181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNF  244 (292)
Q Consensus       181 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~  244 (292)
                      +++|.|..  |++.|.....|.+|+++| .++++|.|.+|++.|.....|..|++ +|.+++|.
T Consensus         7 ~~~~~C~~--C~k~f~~~~~L~~H~~~H-~~~~~~~C~~C~~~f~~~~~L~~H~~-~h~~~~p~   66 (70)
T 1x5w_A            7 GHPEKCSE--CSYSCSSKAALRIHERIH-CTDRPFKCNYCSFDTKQPSNLSKHMK-KFHGDMSG   66 (70)
T ss_dssp             CCSEECSS--SSCEESSHHHHHHHHGGG-CCSCSEECSSSSCEESSHHHHHHHHH-HHHSSSCC
T ss_pred             CCCeECCC--CCcccCCHHHHHHHHHHc-CCCCCEeCCCCCCccCCHHHHHHHHH-HHhCCCCC
Confidence            77888877  888888888888888887 66678888888888888888888887 67777664

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=5.5e-14  Score=92.18  Aligned_cols=62  Identities=40%  Similarity=0.673  Sum_probs=45.6

Q ss_pred             hhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCC
Q psy11068        175 KEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHEST  241 (292)
Q Consensus       175 ~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~  241 (292)
                      +.|.+ +++|.|..  |++.|.....|..|+++| .++++|.|.+|++.|.....|..|++ +|.++
T Consensus         7 ~~H~~-~k~~~C~~--C~k~f~~~~~L~~H~~~h-~~~~~~~C~~C~~~f~~~~~L~~H~~-~H~~~   68 (72)
T 1x6e_A            7 GIHSG-EKPYGCVE--CGKAFSRSSILVQHQRVH-TGEKPYKCLECGKAFSQNSGLINHQR-IHTSG   68 (72)
T ss_dssp             CTTTT-CCCEECSS--SCCEESSHHHHHHHHHGG-GCSCCEECSSSCCEESSHHHHHHHHH-HHHSS
T ss_pred             cccCC-CCCccCCC--CCCccCCHHHHHHHHHhc-CCCCCeECCCCCcccCCHHHHHHHHH-hcCCC
Confidence            34555 67778876  888888877888887777 55677888888888888888888877 66554

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=1.1e-13  Score=92.22  Aligned_cols=68  Identities=29%  Similarity=0.433  Sum_probs=57.9

Q ss_pred             hcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcC--CCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCC
Q psy11068        177 HSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVT--NPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  247 (292)
Q Consensus       177 h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~--~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  247 (292)
                      |.+ +++|.|..  |++.|.....|..|+++|++  ++++|.|.+|++.|.....|..|++..|.++++..-.
T Consensus         2 h~~-~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~   71 (78)
T 2d9h_A            2 SSG-SSGLQCEI--CGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQE   71 (78)
T ss_dssp             CCS-CCCEECSS--SCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCSS
T ss_pred             CCC-CcCeECCC--CCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCccc
Confidence            455 78999988  99999999999999999854  3689999999999999999999997789888876653

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=2.4e-16  Score=103.80  Aligned_cols=69  Identities=19%  Similarity=0.281  Sum_probs=55.7

Q ss_pred             HHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCC
Q psy11068        199 ASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCP  278 (292)
Q Consensus       199 ~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  278 (292)
                      ..|..|+++| .++++|.|.+|++.|.....|..        +++|.|+.  |++.|.+...|..|++ .|.+++||.|+
T Consensus         4 ~~l~~H~~~h-~~~~~~~C~~C~k~f~~~~~l~~--------~~~~~C~~--C~~~f~~~~~l~~H~~-~H~~~~~~~C~   71 (73)
T 2ctu_A            4 GSSGKRQKIH-LGDRSQKCSKCGIIFIRRSTLSR--------RKTPMCEK--CRKDSCQEAALNKDEG-NESGKKTSGPS   71 (73)
T ss_dssp             CSCCCCCCCC-CCCSEEECSSSCCEEECCCCCCC--------SSSCCCHH--HHHTCSCCCSSCCCSS-CCCCCCCSSCC
T ss_pred             hhHHHHHHHh-CCCCCeeCCcccchhCCHHHhCc--------CCCCCCCC--CChhhcCHHHHHHHHH-hhcCCCCCCCC
Confidence            4566777777 56678888888888888777754        67888877  9988988888889988 68888888888


Q ss_pred             C
Q psy11068        279 L  279 (292)
Q Consensus       279 ~  279 (292)
                      +
T Consensus        72 ~   72 (73)
T 2ctu_A           72 S   72 (73)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=2.2e-13  Score=94.38  Aligned_cols=62  Identities=21%  Similarity=0.243  Sum_probs=50.2

Q ss_pred             CcccCCCcccccChhHHHHHHHHhcCCCCc--------ccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCC
Q psy11068        214 DLVCKGCGKQFKVPCRLREHYKAVHESTKN--------FKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCP  278 (292)
Q Consensus       214 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~--------~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  278 (292)
                      .|.|..|++.|.....|..|+++.|.++++        |.|.+  |++.|.+...|..|++ .|++++||.|+
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~   94 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPR--EGKSFKAKYKLVNHIR-VHTGEKSGPSS   94 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSS--TTCCCSSHHHHHHHHH-HHHTCCCCSSC
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCC--CCcccCCHHHHHHHHH-hcCCCCCCCCC
Confidence            467888888888888888887733877776        88877  8888888888888888 68888888885

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=7e-14  Score=91.88  Aligned_cols=67  Identities=24%  Similarity=0.505  Sum_probs=51.4

Q ss_pred             HHHHHHHHhcCCCCCcccC--CCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcC
Q psy11068        200 SLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHL  270 (292)
Q Consensus       200 ~l~~H~~~h~~~~~~~~C~--~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~  270 (292)
                      .|..|+...+.++++|.|+  .|++.|.....|..|++ +|.++++|.|++  |++.|.+...|..|++ .|+
T Consensus         5 ~~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~-~Ht   73 (73)
T 1f2i_G            5 PMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRI--CMRNFSRSDHLTTHIR-THT   73 (73)
T ss_dssp             ---CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHH-HHHCCCCEECTT--TCCEESCHHHHHHHHT-TCC
T ss_pred             CccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHH-hhCCCCCeECCC--CCchhCCHHHHHHHHH-hcC
Confidence            4455555555777888886  58888888888888887 788888888877  8888888888888887 563

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=1.9e-13  Score=87.88  Aligned_cols=60  Identities=20%  Similarity=0.401  Sum_probs=44.2

Q ss_pred             hhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhc-CCCCCcccCCCcccccChhHHHHHHHHhc
Q psy11068        176 EHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHV-TNPEDLVCKGCGKQFKVPCRLREHYKAVH  238 (292)
Q Consensus       176 ~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-~~~~~~~C~~C~~~f~~~~~L~~H~~~~H  238 (292)
                      +|.+ ++||.|..  |++.|.....|..|++++| .++++|.|+.|++.|.....|..|++..|
T Consensus         4 ~h~~-~k~~~C~~--C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H   64 (66)
T 2drp_A            4 TKEG-EHTYRCKV--CSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH   64 (66)
T ss_dssp             EEEE-TTEEECTT--TCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHT
T ss_pred             ccCC-CcceECCC--CcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHc
Confidence            4554 67788876  8888888888888887744 46677888888888888888888877433

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.41  E-value=3.8e-13  Score=83.72  Aligned_cols=56  Identities=32%  Similarity=0.569  Sum_probs=44.5

Q ss_pred             ceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCC
Q psy11068        183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK  242 (292)
Q Consensus       183 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~  242 (292)
                      ||.|..  |++.|.....|..|+++| .++++|.|+.|++.|.....|..|++ +|.+++
T Consensus         1 p~~C~~--C~~~f~~~~~l~~H~~~h-~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~k   56 (57)
T 1bbo_A            1 KYICEE--CGIRXKKPSMLKKHIRTH-TDVRPYHCTYCNFSFKTKGNLTKHMK-SKAHSK   56 (57)
T ss_dssp             CCBCTT--TCCBCSSHHHHHHHHHHT-SSCCCEECSSSSCEESSHHHHHHHHH-SSSSCC
T ss_pred             CCcCCC--CcCcCCCHHHHHHHHHhc-CCCCCccCCCCCchhcCHHHHHHHHH-HhcccC
Confidence            577876  888888888888888887 56678888888888888888888877 676654

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=3e-13  Score=85.14  Aligned_cols=57  Identities=28%  Similarity=0.568  Sum_probs=46.9

Q ss_pred             CceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCC
Q psy11068        182 APYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHEST  241 (292)
Q Consensus       182 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~  241 (292)
                      +||.|..  |++.|.....|..|+++| .++++|.|+.|++.|.....|..|++.+|.++
T Consensus         1 k~~~C~~--C~~~f~~~~~l~~H~~~h-~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEV--CTRAFARQEHLKRHYRSH-TNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTT--TCCCBSCHHHHHHHHHTT-TSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCC--CccccCCHHHHHHHHHHh-CCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            4688877  888888888888888887 56688888888888888888888875578764

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.39  E-value=3.8e-13  Score=83.73  Aligned_cols=53  Identities=32%  Similarity=0.487  Sum_probs=40.3

Q ss_pred             CCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHH
Q psy11068        181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKA  236 (292)
Q Consensus       181 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~  236 (292)
                      +++|.|..  |++.|.....|..|+++| .+++||.|++|++.|.....|..|+++
T Consensus         2 ~~~~~C~~--C~~~f~~~~~l~~H~~~h-~~~~~~~C~~C~~~f~~~~~l~~H~~~   54 (57)
T 3uk3_C            2 SSSRECSY--CGKFFRSNYYLNIHLRTH-TGEKPYKCEFCEYAAAQKTSLRYHLER   54 (57)
T ss_dssp             ---CBCTT--TCCBCSCHHHHHHHHHHH-HCCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCccCCC--CcchhCChHHHHHHHHHc-CCCCCcCCCCCcchhCCHHHHHHHHHH
Confidence            56788877  888888888888888887 556788888888888888888888773

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.38  E-value=2.6e-13  Score=89.12  Aligned_cols=69  Identities=25%  Similarity=0.495  Sum_probs=51.5

Q ss_pred             HHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcC
Q psy11068        169 QYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHE  239 (292)
Q Consensus       169 ~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~  239 (292)
                      .|..|+...+.++++|.|.+..|++.|.....|..|+++| .++++|.|.+|++.|.....|..|++ +|+
T Consensus         5 ~~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h-~~~~~~~C~~C~~~f~~~~~l~~H~~-~Ht   73 (73)
T 1f2i_G            5 PMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIR-THT   73 (73)
T ss_dssp             ---CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHH-HCCCCEECTTTCCEESCHHHHHHHHT-TCC
T ss_pred             CccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhh-CCCCCeECCCCCchhCCHHHHHHHHH-hcC
Confidence            3444554444447889996334999999999999998888 56688999999999999999999987 663

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=1.1e-12  Score=90.82  Aligned_cols=62  Identities=24%  Similarity=0.372  Sum_probs=53.3

Q ss_pred             ceeCCCCCCCcccCCHHHHHHHHHHhcCCCCC--------cccCCCcccccChhHHHHHHHHhcCCCCcccCC
Q psy11068        183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPED--------LVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  247 (292)
Q Consensus       183 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~--------~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  247 (292)
                      .|.|..  |++.|.....|.+|++++|.++++        |.|.+|++.|.....|..|++ +|++++||.|.
T Consensus        25 ~~~C~~--C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   94 (95)
T 2ej4_A           25 SRPKKS--CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-VHTGEKSGPSS   94 (95)
T ss_dssp             SSSCCC--CCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHH-HHHTCCCCSSC
T ss_pred             CCcccc--cccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHH-hcCCCCCCCCC
Confidence            467877  999999999999999883366666        899999999999999999998 89999999985

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=1.4e-15  Score=100.03  Aligned_cols=70  Identities=17%  Similarity=0.219  Sum_probs=55.0

Q ss_pred             hHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccC
Q psy11068        167 MKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  246 (292)
Q Consensus       167 ~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C  246 (292)
                      ...|..|++.|.+ +++|.|..  |++.|.....|..        +++|.|..|++.|.....|..|++ +|.+++||.|
T Consensus         3 ~~~l~~H~~~h~~-~~~~~C~~--C~k~f~~~~~l~~--------~~~~~C~~C~~~f~~~~~l~~H~~-~H~~~~~~~C   70 (73)
T 2ctu_A            3 SGSSGKRQKIHLG-DRSQKCSK--CGIIFIRRSTLSR--------RKTPMCEKCRKDSCQEAALNKDEG-NESGKKTSGP   70 (73)
T ss_dssp             CCSCCCCCCCCCC-CSEEECSS--SCCEEECCCCCCC--------SSSCCCHHHHHTCSCCCSSCCCSS-CCCCCCCSSC
T ss_pred             chhHHHHHHHhCC-CCCeeCCc--ccchhCCHHHhCc--------CCCCCCCCCChhhcCHHHHHHHHH-hhcCCCCCCC
Confidence            3456677777776 78888877  8888887777765        467888888888888888888877 7888888888


Q ss_pred             Cc
Q psy11068        247 TY  248 (292)
Q Consensus       247 ~~  248 (292)
                      ++
T Consensus        71 ~~   72 (73)
T 2ctu_A           71 SS   72 (73)
T ss_dssp             CC
T ss_pred             CC
Confidence            66

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=8e-13  Score=84.97  Aligned_cols=58  Identities=19%  Similarity=0.274  Sum_probs=40.5

Q ss_pred             CCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCC-cCCccccccCHHHHHhHhhhhcCCCCc
Q psy11068        211 NPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT-YDGCKLLFSTKSALKRHNKSKHLNMRM  274 (292)
Q Consensus       211 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~-~~~C~~~f~~~~~l~~H~~~~H~~~~~  274 (292)
                      +.+||.|..|++.|. ...|..|++ + .+++||+|+ .  |++.|..+..|..|++ .|...+|
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~-~-~~~~p~~C~~~--C~k~f~~~~~L~~H~~-~hc~~~~   65 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQY-Q-CPRLPVACPNQ--CGVGTVAREDLPGHLK-DSCNTAL   65 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHH-H-CSSSEEECTTC--CSCCEEETTTHHHHHH-TTSSSCC
T ss_pred             CCCCeeccccCCccC-HHHHHHHHH-H-cCCcCccCCcc--cCcccccHHHHHHHHH-hhcccCc
Confidence            346777777777777 777777776 4 677777776 5  7777777777777777 5655443

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.31  E-value=1.8e-12  Score=79.76  Aligned_cols=49  Identities=24%  Similarity=0.280  Sum_probs=39.3

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCCccCCcccccc
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSFLST  289 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~  289 (292)
                      .|.+++||.|.+  |++.|.+...|.+|++..|.+++||.|++  |+++|.+.
T Consensus         6 ~~~~~k~~~C~~--C~k~f~~~~~L~~H~~~~H~~~k~~~C~~--C~k~F~~~   54 (54)
T 2eps_A            6 SGSVGKPYICQS--CGKGFSRPDHLNGHIKQVHTSERPHKCQV--WVSGPSSG   54 (54)
T ss_dssp             CCCSSCCEECSS--SCCEESSHHHHHHHHHHTSCCCCCCCSSS--SCCSSCCC
T ss_pred             CCCCCCCeECCC--CCcccCCHHHHHHHHHHhcCCCCCccCCC--CCCCCCCC
Confidence            467788888876  88888888888888864688888888887  88888763

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.27  E-value=4.7e-12  Score=82.78  Aligned_cols=58  Identities=29%  Similarity=0.736  Sum_probs=45.6

Q ss_pred             CCCCCcccCC--CcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhc
Q psy11068        210 TNPEDLVCKG--CGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKH  269 (292)
Q Consensus       210 ~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H  269 (292)
                      ...++|.|..  |++.|.....|..|++ +|.+++||+|.+++|++.|.+...|..|++ .|
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~-~H   72 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFSCSWKGCERRFARSDELSRHRR-TH   72 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHH-HHSSSCSEECCCTTCCCEESSHHHHHHHTT-TC
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHH-hcCCCCCccCCCCCCCcccCCHHHHHhHhh-cC
Confidence            4456788877  8888888888888887 788888888853348888888888888887 44

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3e-12  Score=75.81  Aligned_cols=43  Identities=23%  Similarity=0.313  Sum_probs=35.8

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytn_A            3 SGS-SGTGKKPYKCNE--CGKVFTQNSHLARHRG-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCSCCSSCBCTT--TCCBCSSHHHHHHHGG-GTSCCCCCSCCC
T ss_pred             CCc-CCCCCcCeECCC--CCCeeCCHHHHHHHhh-hcCCCCCCCCCC
Confidence            555 788888888877  8888888888888888 688888888886

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.8e-12  Score=75.96  Aligned_cols=43  Identities=28%  Similarity=0.330  Sum_probs=36.4

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||+|.+  |++.|.++..|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emf_A            3 SGS-SGTGGKHFECTE--CGKAFTRKSTLSMHQK-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCS-SSSSSCCEECSS--SCCEESCHHHHHHHGG-GTSCSSCSCCCC
T ss_pred             ccc-ccCCCCCeECCC--CCchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            555 788888899977  9999999999999988 688888998886

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.23  E-value=3.1e-12  Score=75.76  Aligned_cols=43  Identities=23%  Similarity=0.342  Sum_probs=35.7

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|.+++||+|++  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2em0_A            3 SGS-SGMGEKTWKCRE--CDMCFSQASSLRLHQN-VHVGEKPSGPSS   45 (46)
T ss_dssp             CCC-CSCCCCCCCCSS--SCCCCSSHHHHHHHGG-GGSSSSCSCSSC
T ss_pred             CcC-ccCCCcCeECCC--CCcccCCHHHHHHHHH-HcCCCCCcCCCC
Confidence            555 788888888876  8888888888888888 688888888876

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=7.9e-12  Score=80.22  Aligned_cols=57  Identities=26%  Similarity=0.399  Sum_probs=48.0

Q ss_pred             CCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccC-CCcccccChhHHHHHHHHhcCCCCc
Q psy11068        181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK-GCGKQFKVPCRLREHYKAVHESTKN  243 (292)
Q Consensus       181 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~-~C~~~f~~~~~L~~H~~~~H~~~~~  243 (292)
                      .+||.|..  |++.|. ...|..|+++  .+++||.|+ .|++.|..+..|..|++ +|...++
T Consensus         8 ~~~~~C~~--C~k~f~-~~~L~~H~~~--~~~~p~~C~~~C~k~f~~~~~L~~H~~-~hc~~~~   65 (66)
T 2eod_A            8 KRTQPCTY--CTKEFV-FDTIQSHQYQ--CPRLPVACPNQCGVGTVAREDLPGHLK-DSCNTAL   65 (66)
T ss_dssp             CCEEECSS--SCCEEE-HHHHHHHHHH--CSSSEEECTTCCSCCEEETTTHHHHHH-TTSSSCC
T ss_pred             CCCeeccc--cCCccC-HHHHHHHHHH--cCCcCccCCcccCcccccHHHHHHHHH-hhcccCc
Confidence            67899987  999999 8899999887  567889999 89999999999999988 7866554

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.22  E-value=2.9e-12  Score=75.87  Aligned_cols=43  Identities=23%  Similarity=0.307  Sum_probs=36.0

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|++  |++.|.+...|..|++ .|++++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2el4_A            3 SGS-SGTGVKPYGCSQ--CAKTFSLKSQLIVHQR-SHTGVKPSGPSS   45 (46)
T ss_dssp             CCC-CSCCCCSEECSS--SSCEESSHHHHHHHGG-GSSSCCCSCCTT
T ss_pred             ccc-CCCCCCceECCC--CCchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            555 788888888877  8888888888888888 688888888886

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=3.3e-12  Score=75.66  Aligned_cols=43  Identities=19%  Similarity=0.233  Sum_probs=32.5

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.+...|.+|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2eq4_A            3 SGS-SGTGEKLYNCKE--CGKSFSRAPCLLKHER-LHSGEKPSGPSS   45 (46)
T ss_dssp             CCC-CSSCCCCCCBTT--TTBCCSCHHHHHHHHH-HCCSSSCCCCCC
T ss_pred             Ccc-cCCCCCCeECCC--CCCccCchHHHHHHHH-hcCCCCCCCCCC
Confidence            455 677777888866  8888888888888877 577777888776

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=2.7e-12  Score=75.27  Aligned_cols=40  Identities=28%  Similarity=0.368  Sum_probs=32.0

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         4 ~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   43 (44)
T 2emx_A            4 GSSGEKPFGCSC--CEKAFSSKSYLLVHQQ-THAEEKPSGPSS   43 (44)
T ss_dssp             CCSSCCCEECSS--SSCEESSHHHHHHHHH-HHTSSCSCSCCC
T ss_pred             CcCCCcCccCCC--CCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            677888888866  8888888888888887 588888888876

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=4e-12  Score=75.29  Aligned_cols=43  Identities=23%  Similarity=0.241  Sum_probs=35.1

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.++..|.+|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytq_A            3 SGS-SGAGEKPYGCSE--CGKAFSSKSYLIIHMR-THSGEKPSGPSS   45 (46)
T ss_dssp             CSS-CSSCCCSCBCSS--SCCBCSCHHHHHHHHT-TTCCSCSSCCCC
T ss_pred             CCc-CcCCCCCcCCCc--cChhhCChHHHHHHHH-HhCCCCCCCCCC
Confidence            445 788888888876  8888888888888888 688888888876

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=3.2e-12  Score=75.68  Aligned_cols=43  Identities=19%  Similarity=0.293  Sum_probs=34.6

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||+|++  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2eml_A            3 SGS-SGTGEKPYECSV--CGKAFSHRQSLSVHQR-IHSGKKPSGPSS   45 (46)
T ss_dssp             CCC-CCSSCCSEECSS--SCCEESSHHHHHHHHG-GGSSCCCSCSSC
T ss_pred             ccC-CcCCCCCeeCCC--cCCccCCHHHHHHHHH-HhcCCCCCCCCC
Confidence            555 788888888876  8888888888888887 688888888876

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=3.2e-12  Score=75.73  Aligned_cols=43  Identities=23%  Similarity=0.322  Sum_probs=35.2

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|++  |++.|.+...|.+|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ene_A            3 SGS-SGTGEKPYKCNE--CGKVFRHNSYLSRHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCS-SCCCSSSEECSS--SCCEESSHHHHHHHHT-TTCCCCCCSCCC
T ss_pred             ccc-CCCCCCCeECCC--CCchhCChHHHHHHHh-hcCCCCCCCCCC
Confidence            555 788888888876  8888888888888888 688888888876

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=3.5e-12  Score=75.53  Aligned_cols=43  Identities=21%  Similarity=0.270  Sum_probs=34.5

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|.+++||.|.+  |++.|.+...|.+|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2epz_A            3 SGS-SGTGEKPFDCID--CGKAFSDHIGLNQHRR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCS-SCCCCCSBCCTT--TCCCBSSHHHHHHHHT-TTTTCCCCSSCC
T ss_pred             CCC-CcCCCCCeECCC--CCceeCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            445 688888888876  8888888888888887 688888888876

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=3.7e-12  Score=75.43  Aligned_cols=43  Identities=16%  Similarity=0.253  Sum_probs=35.6

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.++..|..|++ .|.+++||.|++
T Consensus         3 h~~-~h~~~k~~~C~~--C~k~F~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2elz_A            3 SGS-SGSVEKPYKCED--CGKGYNRRLNLDMHQR-VHMGEKTSGPSS   45 (46)
T ss_dssp             CCS-CCCCCSSCBCSS--SCCBCSSHHHHHHHGG-GGGSCCCCCSCC
T ss_pred             CCC-CCCCCCCeeCcc--cCchhCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            445 788888888876  8888888888888888 688888888876

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=3.9e-12  Score=75.33  Aligned_cols=43  Identities=21%  Similarity=0.281  Sum_probs=32.6

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytj_A            3 SGS-SGTGEKPYICAE--CGKAFTIRSNLIKHQK-IHTKQKPSGPSS   45 (46)
T ss_dssp             SSC-TTSSCCSEECSS--SCCEESSHHHHHHHHH-HTSCCCCSSCSC
T ss_pred             ccc-CCCCCcCeECCC--CChhhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            555 677777888866  8888888888888877 577777888775

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=3.6e-12  Score=75.47  Aligned_cols=43  Identities=19%  Similarity=0.186  Sum_probs=35.9

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||+|++  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2em7_A            3 SGS-SGTGEKPYKCEE--CGKGFICRRDLYTHHM-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-SSSCCCSEECSS--SCCEESCHHHHHHHGG-GGTTCCCSSTTC
T ss_pred             CCC-CCCCCcCccCCC--ccchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            445 788888888877  8888888888888888 688888888886

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.22  E-value=3.5e-12  Score=75.54  Aligned_cols=43  Identities=19%  Similarity=0.262  Sum_probs=31.9

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|++  |++.|.++..|..|++ .|.+++||.|+.
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emk_A            3 SGS-SGTGEKPYECKE--CGKAFSQTTHLIQHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCSSSCSCBCSS--SCCBCSCHHHHHHHHH-HHSSCCCSSCCC
T ss_pred             CCC-ccCCCCceECCC--CCchhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            445 677777777766  7777777777777777 577777777775

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=3.2e-12  Score=75.69  Aligned_cols=43  Identities=21%  Similarity=0.338  Sum_probs=33.2

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||+|.+  |++.|.+...|.+|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~~~~~C~~--C~k~F~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2eoe_A            3 SGS-SGTGEKPYKCNE--CGKVFTQNSHLANHQR-IHTGVKPSGPSS   45 (46)
T ss_dssp             CSS-CCCCCCSSEETT--TTEECSSHHHHHHHHG-GGSCCCSCSSCC
T ss_pred             CCC-CCCCCCCeECCC--cChhhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            555 677788888866  8888888888888887 688888888876

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.22  E-value=8.9e-12  Score=76.53  Aligned_cols=46  Identities=33%  Similarity=0.539  Sum_probs=34.0

Q ss_pred             CCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccC
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFST  257 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~  257 (292)
                      .++++|.|.+|++.|.....|..|++.+|.+++||+|.+  |++.|++
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~--C~k~F~~   53 (54)
T 2eps_A            8 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV--WVSGPSS   53 (54)
T ss_dssp             CSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS--SCCSSCC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCC--CCCCCCC
Confidence            456777777777777777777777655677777777766  7777764

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3.9e-12  Score=75.34  Aligned_cols=43  Identities=21%  Similarity=0.162  Sum_probs=34.9

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||+|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eop_A            3 SGS-SGTGEKPHECRE--CGKSFSFNSQLIVHQR-IHTGENPSGPSS   45 (46)
T ss_dssp             CCC-SCCCCCSCBCTT--TCCBCSSHHHHHHHHT-TTTTSCCSCCCC
T ss_pred             Ccc-ccCCCCCeeCCC--CCchhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            555 688888888876  8888888888888887 688888888876

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3.3e-12  Score=75.67  Aligned_cols=43  Identities=16%  Similarity=0.193  Sum_probs=32.0

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.++..|.+|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emm_A            3 SGS-SGTGERPHKCNE--CGKSFIQSAHLIQHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCS-CSSCCCSEECSS--SCCEESSHHHHHHHHH-HHSCCCTTSSSC
T ss_pred             CcC-CcCCCCCeeCCC--CChhhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            445 677777777766  7777777777777777 577777777776

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3.9e-12  Score=75.32  Aligned_cols=43  Identities=21%  Similarity=0.292  Sum_probs=33.4

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|++  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ep2_A            3 SGS-SGTGEKPYECSI--CGKSFTKKSQLHVHQQ-IHTGEKPSGPSS   45 (46)
T ss_dssp             SSS-CSSCCCSEECSS--SCCEESSHHHHHHHHH-TTSSCCSCCSCC
T ss_pred             CCC-CCCCCcCcCCCC--CCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            555 677888888866  8888888888888887 688888888876

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.21  E-value=3.7e-12  Score=75.44  Aligned_cols=43  Identities=26%  Similarity=0.345  Sum_probs=34.6

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ema_A            3 SGS-SGTGEKRYKCNE--CGKVFSRNSQLSQHQK-IHTGEKPSGPSS   45 (46)
T ss_dssp             SCS-SCTTSCCEECSS--SCCEESSHHHHHHHHT-GGGCCCCCSSSC
T ss_pred             Ccc-CCCCCcCcCCCC--CcchhCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            555 688888888876  8888888888888887 688888888876

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3.5e-12  Score=75.54  Aligned_cols=43  Identities=23%  Similarity=0.286  Sum_probs=34.2

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.++..|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eq0_A            3 SGS-SGTGEKPYKCHE--CGKVFRRNSHLARHQL-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CTTCCCCEECTT--TCCEESSHHHHHHHHT-TTCCCCCSCCSC
T ss_pred             CCc-CCCCCCCeECCC--CCchhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            445 678888888876  8888888888888887 688888888876

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3.4e-12  Score=75.62  Aligned_cols=43  Identities=21%  Similarity=0.283  Sum_probs=33.2

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.++..|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2ytk_A            3 SGS-SGSGEKPYKCNE--CGKVFTQNSHLTNHWR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CSSSSCSEECSS--SCCEESSHHHHHHHHH-HHSSSSCSSCCC
T ss_pred             Ccc-cCCCCCCEeCCc--CCCccCCHHHHHHHHH-HHCCCCCCCCCC
Confidence            445 677788888866  8888888888888887 678888888876

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=3.7e-12  Score=75.44  Aligned_cols=43  Identities=26%  Similarity=0.279  Sum_probs=35.0

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2em5_A            3 SGS-SGSSTKSHQCHE--CGRGFTLKSHLNQHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCCCSCSEECSS--SCCEESSHHHHHHHHT-TTSCSCCSSCCC
T ss_pred             CcC-CCCCCCCeECCc--CCCccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            555 788888888876  8888888888888887 688888888876

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=4.1e-12  Score=75.22  Aligned_cols=43  Identities=26%  Similarity=0.314  Sum_probs=31.9

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||+|++  |++.|.++..|..|++ .|++++||.|++
T Consensus         3 H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eoq_A            3 SGS-SGTGEKPFKCDI--CGKSFCGRSRLNRHSM-VHTAEKPSGPSS   45 (46)
T ss_dssp             CCC-CSSSSCSCCCSS--SCCCCSSHHHHHHHHH-HTTCCCSSSCCC
T ss_pred             CCC-CCCCCCCcCCCc--CCchhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            445 677777777766  7777777777777777 577777777775

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=4.6e-12  Score=75.01  Aligned_cols=43  Identities=23%  Similarity=0.303  Sum_probs=35.8

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2en1_A            3 SGS-SGSGEKPFKCEE--CGKRFTQNSQLHSHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             STT-CCCCCCSEEETT--TTEEESSHHHHHHHGG-GGSCCCCSCCCC
T ss_pred             ccc-CCCCCCCeeCCC--CCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            556 788888888876  8888888888888888 688888888876

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.21  E-value=2.9e-12  Score=75.93  Aligned_cols=43  Identities=30%  Similarity=0.315  Sum_probs=28.8

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||+|.+  |++.|.++..|.+|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ely_A            3 SGS-SGTGEKPFKCVE--CGKGFSRRSALNVHHK-LHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCCCCCSBCCSS--SCCCBSSTTHHHHHHH-HHSCCSSCSCCC
T ss_pred             CCC-CCCCCCCcccCc--cCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            344 566677777755  7777777777777776 566777777765

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3.4e-12  Score=75.58  Aligned_cols=43  Identities=19%  Similarity=0.243  Sum_probs=32.5

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|.+++||+|.+  |++.|.++..|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emy_A            3 SGS-SGTGENPYECHE--CGKAFSRKYQLISHQR-THAGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCCSSCCEECSS--SCCEESSHHHHHHHHH-HHTTSCCSCSSC
T ss_pred             CCC-CCCCCcCcCCCC--CCcccCcHHHHHHHHH-HcCCCCCCCCCC
Confidence            445 677777888866  8888888888888877 577778888776

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.21  E-value=3.6e-12  Score=75.48  Aligned_cols=43  Identities=28%  Similarity=0.410  Sum_probs=31.2

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||+|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emk_A            3 SGSSG-TGEKPYECKECGKAFSQTTHLIQHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCC-SSSCSCBCSSSCCBCSCHHHHHHHHH-HHSSCCCSSCCC
T ss_pred             CCCcc-CCCCceECCCCCchhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            55566 55677777777777777777777776 677777777765

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=4.8e-12  Score=74.93  Aligned_cols=43  Identities=21%  Similarity=0.326  Sum_probs=33.8

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|++  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2eme_A            3 SGS-SGSGEKPYVCDY--CGKAFGLSAELVRHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-TTCCCCSEECSS--SCCEESSHHHHHHHHG-GGCCCSCCSSCC
T ss_pred             CCC-CCCCCCCeECCC--CChhhCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            555 677888888866  8888888888888887 688888888876

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.20  E-value=4.4e-12  Score=75.07  Aligned_cols=43  Identities=19%  Similarity=0.221  Sum_probs=35.8

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2em9_A            3 SGS-SGTGEKPYNCKE--CGKSFRWASCLLKHQR-VHSGEKPSGPSS   45 (46)
T ss_dssp             SCC-SCCCCCSEECSS--SCCEESSHHHHHHHGG-GGTSCCCCSTTC
T ss_pred             CCC-CCCCCcCeECCc--cccccCChHHHHHHHH-HhCCCCCCCCCC
Confidence            555 788888888877  8888888888888888 688888888876

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.3e-12  Score=75.67  Aligned_cols=43  Identities=21%  Similarity=0.216  Sum_probs=32.8

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emp_A            3 SGS-SGTGVKPYMCNE--CGKAFSVYSSLTTHQV-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCS-CSSCCCSEECSS--SCCEESCHHHHHHHHH-HHHCCSCCSCCC
T ss_pred             ccc-ccCCCcCeECCC--CCchhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            555 677778888866  8888888888888877 577788888876

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.8e-12  Score=75.39  Aligned_cols=43  Identities=21%  Similarity=0.311  Sum_probs=32.0

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||+|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2ytd_A            3 SGS-SGSGEKPYKCSE--CGKAFHRHTHLNEHRR-IHTGYRPSGPSS   45 (46)
T ss_dssp             CCC-CSCCCCSEECSS--SCCEESSHHHHHHHHH-HHTCCCSSCSSC
T ss_pred             Ccc-ccCCCcCeECCC--CCCeeCChHHHHHHHH-HcCCCCCCCCCC
Confidence            445 677777777766  7777777777777777 577777777776

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=4.4e-12  Score=75.06  Aligned_cols=43  Identities=28%  Similarity=0.305  Sum_probs=31.0

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|++  |++.|.+...|.+|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2eov_A            3 SGS-SGTGEKPYKCSD--CGKSFTWKSRLRIHQK-CHTGERHSGPSS   45 (46)
T ss_dssp             CCC-CCSSCCSCBCSS--SCCBCSSHHHHHHHHH-HHSCCSSCCSCC
T ss_pred             CCC-CCCCCCCccCCc--cChhhCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            445 677777777766  7777777777777776 577777777765

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=4.4e-12  Score=75.10  Aligned_cols=43  Identities=26%  Similarity=0.324  Sum_probs=34.0

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2ytr_A            3 SGS-SGTGEKPYKCNE--CGKAFSQTSKLARHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             SSC-CCSSCCTTCCTT--TCCCCSSHHHHHHHHT-TTTTCSCCCSCC
T ss_pred             CCc-CCCCCcCcCCCC--CCCccCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            555 678888888876  8888888888888887 688888888876

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.1e-12  Score=75.74  Aligned_cols=43  Identities=21%  Similarity=0.298  Sum_probs=32.6

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.++..|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emh_A            3 SGS-SGTGERPYICTV--CGKAFTDRSNLIKHQK-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-SCSCCCSEECTT--TCCEESSHHHHHHHHH-HHHCSSCSSSCC
T ss_pred             CCC-CCCCCCCcCCCC--CCchhCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            455 677778888866  8888888888888877 577778888776

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=4.4e-12  Score=75.10  Aligned_cols=43  Identities=21%  Similarity=0.247  Sum_probs=35.2

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||+|++  |++.|.+...|..|++ .|++++||.|+.
T Consensus         3 H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2en8_A            3 SGS-SGSGEKSHTCDE--CGKNFCYISALRIHQR-VHMGEKCSGPSS   45 (46)
T ss_dssp             CCC-CCCCCSSEECTT--TCCEESSHHHHHHHHT-TTCCSCSSCCSC
T ss_pred             ccc-cCCCCCCeECCC--cCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            555 788888888876  8888888888888887 688888888876

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=5.1e-12  Score=74.81  Aligned_cols=43  Identities=23%  Similarity=0.223  Sum_probs=33.0

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 h~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2enc_A            3 SGS-SGSGEKPFKCEE--CGKGFYTNSQCYSHQR-SHSGEKPSGPSS   45 (46)
T ss_dssp             CSS-CCCCCCSEECSS--SCCEESSHHHHHHHHH-HSCCSSCCSSCC
T ss_pred             CCC-CCCCCCCcCCCC--CCCcCCChHHHHHHHH-HhCCCCCCCCCC
Confidence            444 677788888866  8888888888888887 588888888876

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=4.5e-12  Score=75.03  Aligned_cols=43  Identities=26%  Similarity=0.322  Sum_probs=32.4

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .+++||.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2eq4_A            3 SGSSG-TGEKLYNCKECGKSFSRAPCLLKHER-LHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCS-SCCCCCCBTTTTBCCSCHHHHHHHHH-HCCSSSCCCCCC
T ss_pred             CcccC-CCCCCeECCCCCCccCchHHHHHHHH-hcCCCCCCCCCC
Confidence            55666 56677888888888888888888877 777788888765

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=3.6e-12  Score=75.50  Aligned_cols=43  Identities=19%  Similarity=0.259  Sum_probs=32.6

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|+.
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eoo_A            3 SGS-SGSGERPYGCNE--CGKNFGRHSHLIEHLK-RHFREKSSGPSS   45 (46)
T ss_dssp             CCC-CCSCCCCEECSS--SCCEESSHHHHHHHHH-HHHSTTSSCCSC
T ss_pred             CCC-CCCCCCCEEccc--cCcccCCHHHHHHHHH-HHcCCCCCCCCC
Confidence            555 677777888866  8888888888888877 577777888776

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=5.4e-12  Score=74.71  Aligned_cols=44  Identities=27%  Similarity=0.454  Sum_probs=32.3

Q ss_pred             HHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       203 ~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      +|+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytj_A            2 SSGSSG-TGEKPYICAECGKAFTIRSNLIKHQK-IHTKQKPSGPSS   45 (46)
T ss_dssp             CSSCTT-SSCCSEECSSSCCEESSHHHHHHHHH-HTSCCCCSSCSC
T ss_pred             CcccCC-CCCcCeECCCCChhhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            356666 56677777777777777777777776 677777777765

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=4.3e-12  Score=75.12  Aligned_cols=43  Identities=23%  Similarity=0.366  Sum_probs=30.0

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emm_A            3 SGSSG-TGERPHKCNECGKSFIQSAHLIQHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCS-SCCCSEECSSSCCEESSHHHHHHHHH-HHSCCCTTSSSC
T ss_pred             CcCCc-CCCCCeeCCCCChhhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            45555 55677777777777777777777766 677777777755

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=5.2e-12  Score=74.74  Aligned_cols=43  Identities=28%  Similarity=0.431  Sum_probs=31.0

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|++|++.|.....|..|++ +|.+++||+|++
T Consensus         3 H~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2eov_A            3 SGSSG-TGEKPYKCSDCGKSFTWKSRLRIHQK-CHTGERHSGPSS   45 (46)
T ss_dssp             CCCCC-SSCCSCBCSSSCCBCSSHHHHHHHHH-HHSCCSSCCSCC
T ss_pred             CCCCC-CCCCCccCCccChhhCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            55566 55677777777777777777777776 677777777765

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=4e-12  Score=75.28  Aligned_cols=43  Identities=21%  Similarity=0.278  Sum_probs=31.6

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||+|.+  |++.|.+...|.+|++ .|.+++||.|++
T Consensus         3 h~~-~h~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2ytm_A            3 SGS-SGTGEKPYKCME--CGKAFGDNSSCTQHQR-LHTGQRPSGPSS   45 (46)
T ss_dssp             SCC-CCSSCCSSSBTT--TTBCCSSHHHHHHHHH-HHHSCCCCCCCC
T ss_pred             CCc-CCCCCCCcCCCC--CCchhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            344 677777777766  7777777777777777 577777777776

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.19  E-value=6.6e-12  Score=74.34  Aligned_cols=43  Identities=21%  Similarity=0.254  Sum_probs=34.9

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|.+++||+|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 h~~-~h~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2el6_A            3 SGS-SGAGVNPYKCSQ--CEKSFSGKLRLLVHQR-MHTREKPSGPSS   45 (46)
T ss_dssp             SCC-SSCCCCSEECSS--SSCEESSHHHHHHHHG-GGCCSSCCSCCC
T ss_pred             CCC-CCCCCCCeECCC--CCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            444 688888888876  8888888888888887 688888888876

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=4.1e-12  Score=75.23  Aligned_cols=43  Identities=23%  Similarity=0.386  Sum_probs=31.6

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2eoe_A            3 SGSSG-TGEKPYKCNECGKVFTQNSHLANHQR-IHTGVKPSGPSS   45 (46)
T ss_dssp             CSSCC-CCCCSSEETTTTEECSSHHHHHHHHG-GGSCCCSCSSCC
T ss_pred             CCCCC-CCCCCeECCCcChhhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            55566 56677777777777777777777776 777777777765

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=3.6e-12  Score=75.46  Aligned_cols=43  Identities=19%  Similarity=0.269  Sum_probs=36.2

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.++..|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytg_A            3 SGS-SGTGEKPFKCGE--CGKSYNQRVHLTQHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCSSCCSEECTT--TCCEESSSHHHHTTGG-GGSSCCSSCSCC
T ss_pred             CCC-CCCCCCCeECCC--CCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            555 788888888877  8888888888888888 688888888886

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=4.3e-12  Score=75.12  Aligned_cols=43  Identities=23%  Similarity=0.252  Sum_probs=34.4

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|.+++||+|++  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~h~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2ysp_A            3 SGS-SGTGEKPYKCEK--CGKGYNSKFNLDMHQK-VHTGERPSGPSS   45 (46)
T ss_dssp             CCC-CCSSCCSEEETT--TTEEESCHHHHHHHHT-TSCSCCSSCCSC
T ss_pred             CCc-CCCCCCCeECCC--CCCccCCHHHHHHHHH-hhCCCCCCCCCC
Confidence            445 688888888876  8888888888888887 688888888876

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=5.6e-12  Score=74.63  Aligned_cols=43  Identities=21%  Similarity=0.280  Sum_probs=35.0

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.++..|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2ep3_A            3 SGS-SGTGEKPYRCAE--CGKAFTDRSNLFTHQK-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCS-SSSCCCSEECSS--SCCEESSHHHHHHHHT-TTTTSCCCCTTC
T ss_pred             CCC-CCCCCCCeECCC--CCchhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            555 788888888876  8888888888888887 688888888875

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=5.4e-12  Score=74.72  Aligned_cols=43  Identities=28%  Similarity=0.356  Sum_probs=31.5

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||.|++
T Consensus         3 H~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eoq_A            3 SGSSG-TGEKPFKCDICGKSFCGRSRLNRHSM-VHTAEKPSGPSS   45 (46)
T ss_dssp             CCCCS-SSSCSCCCSSSCCCCSSHHHHHHHHH-HTTCCCSSSCCC
T ss_pred             CCCCC-CCCCCcCCCcCCchhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            55566 56677777777777777777777776 677777777765

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.19  E-value=6.5e-12  Score=74.36  Aligned_cols=43  Identities=26%  Similarity=0.348  Sum_probs=32.8

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||+|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ely_A            3 SGSSG-TGEKPFKCVECGKGFSRRSALNVHHK-LHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCC-CCCCSBCCSSSCCCBSSTTHHHHHHH-HHSCCSSCSCCC
T ss_pred             CCCCC-CCCCCcccCccCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            55566 56678888888888888888888877 788888888865

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.6e-12  Score=74.99  Aligned_cols=43  Identities=26%  Similarity=0.269  Sum_probs=31.0

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|.+++||.|++  |++.|.+...|..|++ .|.+++||.|+.
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2epw_A            3 SGS-SGTGEKPCKCTE--CGKAFCWKSQLIMHQR-THVDDKHSGPSS   45 (46)
T ss_dssp             CCC-CCCCCCSEECSS--SCCEESSSHHHHHHHH-HCCSCCCSCCCC
T ss_pred             Ccc-cCCCCCCeeCCC--CCCccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            445 677777777766  7777777777777777 577777777765

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.3e-12  Score=75.14  Aligned_cols=43  Identities=23%  Similarity=0.349  Sum_probs=30.0

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .+++||.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emy_A            3 SGSSG-TGENPYECHECGKAFSRKYQLISHQR-THAGEKPSGPSS   45 (46)
T ss_dssp             CCCCC-CSSCCEECSSSCCEESSHHHHHHHHH-HHTTSCCSCSSC
T ss_pred             CCCCC-CCCcCcCCCCCCcccCcHHHHHHHHH-HcCCCCCCCCCC
Confidence            45555 55667777777777777777777766 677777777765

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.1e-12  Score=75.22  Aligned_cols=43  Identities=23%  Similarity=0.351  Sum_probs=30.7

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytn_A            3 SGSSG-TGKKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCC-SCCSSCBCTTTCCBCSSHHHHHHHGG-GTSCCCCCSCCC
T ss_pred             CCcCC-CCCcCeECCCCCCeeCCHHHHHHHhh-hcCCCCCCCCCC
Confidence            45555 55677777777777777777777766 677777777765

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.1e-12  Score=75.25  Aligned_cols=43  Identities=26%  Similarity=0.387  Sum_probs=29.7

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||+|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emp_A            3 SGSSG-TGVKPYMCNECGKAFSVYSSLTTHQV-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCS-SCCCSEECSSSCCEESCHHHHHHHHH-HHHCCSCCSCCC
T ss_pred             ccccc-CCCcCeECCCCCchhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            55555 55667777777777777777777766 677777777755

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=5.9e-12  Score=74.53  Aligned_cols=43  Identities=16%  Similarity=0.194  Sum_probs=31.5

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|+.
T Consensus         3 H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2yso_A            3 SGS-SGSREKSHQCRE--CGEIFFQYVSLIEHQV-LHMGQKNSGPSS   45 (46)
T ss_dssp             CSC-CSSCCCCEECTT--TCCEESSHHHHHHHHH-HHSCCSCCCTTC
T ss_pred             ccc-ccCCCCCEEccc--cChhhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            444 677777777766  7777777777777777 577777777765

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.18  E-value=4.2e-12  Score=75.20  Aligned_cols=43  Identities=21%  Similarity=0.273  Sum_probs=30.8

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .+++||.|++|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2em0_A            3 SGSSG-MGEKTWKCRECDMCFSQASSLRLHQN-VHVGEKPSGPSS   45 (46)
T ss_dssp             CCCCS-CCCCCCCCSSSCCCCSSHHHHHHHGG-GGSSSSCSCSSC
T ss_pred             CcCcc-CCCcCeECCCCCcccCCHHHHHHHHH-HcCCCCCcCCCC
Confidence            55565 55677777777777777777777776 677777777765

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.4e-12  Score=75.10  Aligned_cols=43  Identities=23%  Similarity=0.325  Sum_probs=29.6

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|++|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2eml_A            3 SGSSG-TGEKPYECSVCGKAFSHRQSLSVHQR-IHSGKKPSGPSS   45 (46)
T ss_dssp             CCCCC-SSCCSEECSSSCCEESSHHHHHHHHG-GGSSCCCSCSSC
T ss_pred             ccCCc-CCCCCeeCCCcCCccCCHHHHHHHHH-HhcCCCCCCCCC
Confidence            45555 55667777777777777777777766 677777777755

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=3.3e-12  Score=75.67  Aligned_cols=43  Identities=23%  Similarity=0.332  Sum_probs=32.6

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.++..|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2yu8_A            3 SGS-SGTGEKPYKCNE--CGKVFTQNSHLARHRR-VHTGGKPSGPSS   45 (46)
T ss_dssp             CCC-CCCCCSSEECSS--SCCEESSSHHHHHHTH-HHHSCCCSCSCC
T ss_pred             cCc-CCCCCCCeECCc--CCchhCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            445 677778888866  8888888888888877 577778888876

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=7.7e-12  Score=74.35  Aligned_cols=44  Identities=18%  Similarity=0.216  Sum_probs=36.0

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|.+++||.|.+  |++.|.+...|..|++..|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~~H~~~k~~~C~~   46 (47)
T 2epx_A            3 SGS-SGTGKKPYECIE--CGKAFIQNTSLIRHWRYYHTGEKPSGPSS   46 (47)
T ss_dssp             CCC-CCCCCCSBCCSS--SCCCBSSHHHHHHHHTTTTTTSCSSSCCC
T ss_pred             ccc-ccCCCCCEECCc--cCchhCChHHHHHHhHhhcCCCCCCCCCC
Confidence            455 788888888877  88888888888888874588888888886

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=5.8e-12  Score=73.80  Aligned_cols=42  Identities=19%  Similarity=0.247  Sum_probs=28.5

Q ss_pred             HHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        205 QRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       205 ~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      +++| .++++|.|.+|++.|.....|..|++ +|.+++||.|.+
T Consensus         2 ~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   43 (44)
T 2emx_A            2 SSGS-SGEKPFGCSCCEKAFSSKSYLLVHQQ-THAEEKPSGPSS   43 (44)
T ss_dssp             CCCC-SSCCCEECSSSSCEESSHHHHHHHHH-HHTSSCSCSCCC
T ss_pred             CCCc-CCCcCccCCCCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            4445 55667777777777777777777766 677777777755

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.6e-12  Score=74.99  Aligned_cols=43  Identities=23%  Similarity=0.293  Sum_probs=31.7

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 h~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2en6_A            3 SGS-SGSGEKPYGCNE--CGKTFSQKSILSAHQR-THTGEKPSGPSS   45 (46)
T ss_dssp             CSC-CCCSSCCEEETT--TTEEESSHHHHHHHHH-HHSSCCCSSSCC
T ss_pred             CCC-ccCCCcCeECCC--CCcccCchHHHHHHHH-HcCCCCCCCCCC
Confidence            444 677777777766  7777777777777777 577777777776

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.9e-12  Score=74.88  Aligned_cols=43  Identities=21%  Similarity=0.426  Sum_probs=30.6

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|..|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2ytk_A            3 SGSSG-SGEKPYKCNECGKVFTQNSHLTNHWR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCS-SSSCSEECSSSCCEESSHHHHHHHHH-HHSSSSCSSCCC
T ss_pred             CcccC-CCCCCEeCCcCCCccCCHHHHHHHHH-HHCCCCCCCCCC
Confidence            45555 55677777777777777777777776 677777777765

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.2e-12  Score=75.18  Aligned_cols=43  Identities=26%  Similarity=0.381  Sum_probs=30.8

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emh_A            3 SGSSG-TGERPYICTVCGKAFTDRSNLIKHQK-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSC-SCCCSEECTTTCCEESSHHHHHHHHH-HHHCSSCSSSCC
T ss_pred             CCCCC-CCCCCcCCCCCCchhCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            55566 55677777777777777777777776 677777777765

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=5.5e-12  Score=74.66  Aligned_cols=43  Identities=21%  Similarity=0.386  Sum_probs=29.9

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||+|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2ytd_A            3 SGSSG-SGEKPYKCSECGKAFHRHTHLNEHRR-IHTGYRPSGPSS   45 (46)
T ss_dssp             CCCCS-CCCCSEECSSSCCEESSHHHHHHHHH-HHTCCCSSCSSC
T ss_pred             Ccccc-CCCcCeECCCCCCeeCChHHHHHHHH-HcCCCCCCCCCC
Confidence            45555 55667777777777777777777766 677777777765

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=4.9e-12  Score=74.88  Aligned_cols=43  Identities=21%  Similarity=0.362  Sum_probs=31.2

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eop_A            3 SGSSG-TGEKPHECRECGKSFSFNSQLIVHQR-IHTGENPSGPSS   45 (46)
T ss_dssp             CCCSC-CCCCSCBCTTTCCBCSSHHHHHHHHT-TTTTSCCSCCCC
T ss_pred             Ccccc-CCCCCeeCCCCCchhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            55566 56677777777777777777777776 677777777765

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=6.5e-12  Score=74.36  Aligned_cols=43  Identities=23%  Similarity=0.349  Sum_probs=31.1

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|++|++.|.....|..|++ +|.+++||.|+.
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ep2_A            3 SGSSG-TGEKPYECSICGKSFTKKSQLHVHQQ-IHTGEKPSGPSS   45 (46)
T ss_dssp             SSSCS-SCCCSEECSSSCCEESSHHHHHHHHH-TTSSCCSCCSCC
T ss_pred             CCCCC-CCCcCcCCCCCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            55566 55677777777777777777777776 677777777755

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=4.7e-12  Score=74.98  Aligned_cols=43  Identities=23%  Similarity=0.359  Sum_probs=31.1

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eq0_A            3 SGSSG-TGEKPYKCHECGKVFRRNSHLARHQL-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCT-TCCCCEECTTTCCEESSHHHHHHHHT-TTCCCCCSCCSC
T ss_pred             CCcCC-CCCCCeECCCCCchhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            45556 55677777777777777777777776 677777777765

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=6.4e-12  Score=74.37  Aligned_cols=43  Identities=23%  Similarity=0.413  Sum_probs=29.9

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|++|++.|.....|..|++ +|.+++||+|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2eme_A            3 SGSSG-SGEKPYVCDYCGKAFGLSAELVRHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCTT-CCCCSEECSSSCCEESSHHHHHHHHG-GGCCCSCCSSCC
T ss_pred             CCCCC-CCCCCeECCCCChhhCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            55556 55667777777777777777777766 677777777755

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.17  E-value=4.1e-12  Score=75.23  Aligned_cols=43  Identities=21%  Similarity=0.289  Sum_probs=30.2

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|++++||.|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2el4_A            3 SGSSG-TGVKPYGCSQCAKTFSLKSQLIVHQR-SHTGVKPSGPSS   45 (46)
T ss_dssp             CCCCS-CCCCSEECSSSSCEESSHHHHHHHGG-GSSSCCCSCCTT
T ss_pred             cccCC-CCCCceECCCCCchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            55555 55677777777777777777777766 677777777755

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.17  E-value=1.6e-12  Score=82.45  Aligned_cols=52  Identities=17%  Similarity=0.340  Sum_probs=36.8

Q ss_pred             HHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCCccCCcccccccC
Q psy11068        231 REHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSFLSTQE  291 (292)
Q Consensus       231 ~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~  291 (292)
                      ..|++ +|.+++||.|+.  |++.|.+...|.   + .|.+++||.|+.  ||++|.....
T Consensus         3 ~~h~~-~H~~~k~~~C~~--C~k~F~~~~~l~---~-~H~~~k~~~C~~--C~k~f~~~~~   54 (62)
T 1vd4_A            3 ETDER-DSTNRASFKCPV--CSSTFTDLEANQ---L-FDPMTGTFRCTF--CHTEVEEDES   54 (62)
T ss_dssp             CCCSS-SCCSSSEEECSS--SCCEEEHHHHHH---H-EETTTTEEBCSS--SCCBCEECTT
T ss_pred             hhHHH-HcCCCCCccCCC--CCchhccHHHhH---h-hcCCCCCEECCC--CCCccccCcc
Confidence            34555 677777777766  777777777765   4 577777777777  7777766544

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=6e-12  Score=74.48  Aligned_cols=44  Identities=25%  Similarity=0.311  Sum_probs=33.2

Q ss_pred             HHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       203 ~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      +|+++| .++++|.|++|++.|.....|..|++ +|.+++||.|++
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2epw_A            2 SSGSSG-TGEKPCKCTECGKAFCWKSQLIMHQR-THVDDKHSGPSS   45 (46)
T ss_dssp             CCCCCC-CCCCSEECSSSCCEESSSHHHHHHHH-HCCSCCCSCCCC
T ss_pred             cCcccC-CCCCCeeCCCCCCccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            355666 56677888888888888888888877 788888888865

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=4.7e-12  Score=74.98  Aligned_cols=43  Identities=26%  Similarity=0.326  Sum_probs=29.9

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|++|++.|.....|..|++ +|.+++||+|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eoo_A            3 SGSSG-SGERPYGCNECGKNFGRHSHLIEHLK-RHFREKSSGPSS   45 (46)
T ss_dssp             CCCCC-SCCCCEECSSSCCEESSHHHHHHHHH-HHHSTTSSCCSC
T ss_pred             CCCCC-CCCCCEEccccCcccCCHHHHHHHHH-HHcCCCCCCCCC
Confidence            55555 55667777777777777777777766 677777777755

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.17  E-value=5.2e-12  Score=74.78  Aligned_cols=43  Identities=26%  Similarity=0.405  Sum_probs=29.7

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ema_A            3 SGSSG-TGEKRYKCNECGKVFSRNSQLSQHQK-IHTGEKPSGPSS   45 (46)
T ss_dssp             SCSSC-TTSCCEECSSSCCEESSHHHHHHHHT-GGGCCCCCSSSC
T ss_pred             CccCC-CCCcCcCCCCCcchhCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            45555 55667777777777777777777766 677777777754

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=5.8e-12  Score=74.56  Aligned_cols=43  Identities=23%  Similarity=0.416  Sum_probs=31.3

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2ytr_A            3 SGSSG-TGEKPYKCNECGKAFSQTSKLARHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCC-SSCCTTCCTTTCCCCSSHHHHHHHHT-TTTTCSCCCSCC
T ss_pred             CCcCC-CCCcCcCCCCCCCccCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            55566 56677777777777777777777776 677777777765

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=7.3e-12  Score=74.14  Aligned_cols=43  Identities=23%  Similarity=0.365  Sum_probs=30.7

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||+|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2epz_A            3 SGSSG-TGEKPFDCIDCGKAFSDHIGLNQHRR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSC-CCCCSBCCTTTCCCBSSHHHHHHHHT-TTTTCCCCSSCC
T ss_pred             CCCCc-CCCCCeECCCCCceeCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            45555 55677777777777777777777776 677777777765

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=4.8e-12  Score=74.94  Aligned_cols=43  Identities=19%  Similarity=0.422  Sum_probs=29.5

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2em5_A            3 SGSSG-SSTKSHQCHECGRGFTLKSHLNQHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCC-CCSCSEECSSSCCEESSHHHHHHHHT-TTSCSCCSSCCC
T ss_pred             CcCCC-CCCCCeECCcCCCccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            45555 55667777777777777777777766 677777777755

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=6e-12  Score=74.50  Aligned_cols=43  Identities=16%  Similarity=0.242  Sum_probs=32.2

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|.+++||.|++  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 h~~-~h~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2em8_A            3 SGS-SGSGEKPYKCVE--CGKGYKRRLDLDFHQR-VHTGEKLSGPSS   45 (46)
T ss_dssp             CCC-CCCSCCSEECSS--SCCEESSHHHHHHHHH-HHHCCCCCCSCC
T ss_pred             CCC-CCCCCCCeECcc--cCchhCCHHHHHHHHH-HHcCCCCCCCCC
Confidence            344 677777888866  8888888888888877 577777888776

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=8.6e-12  Score=73.82  Aligned_cols=43  Identities=21%  Similarity=0.299  Sum_probs=30.2

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytq_A            3 SGSSG-AGEKPYGCSECGKAFSSKSYLIIHMR-THSGEKPSGPSS   45 (46)
T ss_dssp             CSSCS-SCCCSCBCSSSCCBCSCHHHHHHHHT-TTCCSCSSCCCC
T ss_pred             CCcCc-CCCCCcCCCccChhhCChHHHHHHHH-HhCCCCCCCCCC
Confidence            44555 55677777777777777777777766 677777777765

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=6.8e-12  Score=74.25  Aligned_cols=43  Identities=23%  Similarity=0.383  Sum_probs=28.7

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|++|++.|.....|..|++ +|.+++||.|.+
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ene_A            3 SGSSG-TGEKPYKCNECGKVFRHNSYLSRHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSC-CCSSSEECSSSCCEESSHHHHHHHHT-TTCCCCCCSCCC
T ss_pred             cccCC-CCCCCeECCCCCchhCChHHHHHHHh-hcCCCCCCCCCC
Confidence            45555 55566777777777777777777766 677777777755

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=9e-12  Score=73.74  Aligned_cols=43  Identities=21%  Similarity=0.224  Sum_probs=32.6

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2em2_A            3 SGS-SGSGEKPFKCKE--CGKAFRQNIHLASHLR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-SCCCCCSEECSS--SCCEESSHHHHHHHHH-HHCCCCSSCSSC
T ss_pred             CCC-CCCCCCCEECCc--CCchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            444 677778888866  8888888888888877 577888888775

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=6.3e-12  Score=74.43  Aligned_cols=43  Identities=26%  Similarity=0.381  Sum_probs=29.2

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emf_A            3 SGSSG-TGGKHFECTECGKAFTRKSTLSMHQK-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSS-SSSCCEECSSSCCEESCHHHHHHHGG-GTSCSSCSCCCC
T ss_pred             ccccc-CCCCCeECCCCCchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            45555 55667777777777777777777766 677777777754

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=8.6e-12  Score=73.83  Aligned_cols=43  Identities=19%  Similarity=0.306  Sum_probs=30.7

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||+|++
T Consensus         3 h~~~h-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2ytm_A            3 SGSSG-TGEKPYKCMECGKAFGDNSSCTQHQR-LHTGQRPSGPSS   45 (46)
T ss_dssp             SCCCC-SSCCSSSBTTTTBCCSSHHHHHHHHH-HHHSCCCCCCCC
T ss_pred             CCcCC-CCCCCcCCCCCCchhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            44555 55677777777777777777777776 677777777765

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=5.6e-12  Score=74.63  Aligned_cols=43  Identities=26%  Similarity=0.352  Sum_probs=30.5

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|++|++.|.....|..|++ +|++++||+|+.
T Consensus         3 H~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2en8_A            3 SGSSG-SGEKSHTCDECGKNFCYISALRIHQR-VHMGEKCSGPSS   45 (46)
T ss_dssp             CCCCC-CCCSSEECTTTCCEESSHHHHHHHHT-TTCCSCSSCCSC
T ss_pred             ccccC-CCCCCeECCCcCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            55555 55677777777777777777777766 677777777765

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=1.1e-11  Score=73.34  Aligned_cols=43  Identities=19%  Similarity=0.315  Sum_probs=31.3

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .+++||.|.+|++.|.....|..|++ +|.+++||+|.+
T Consensus         3 h~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2enc_A            3 SGSSG-SGEKPFKCEECGKGFYTNSQCYSHQR-SHSGEKPSGPSS   45 (46)
T ss_dssp             CSSCC-CCCCSEECSSSCCEESSHHHHHHHHH-HSCCSSCCSSCC
T ss_pred             CCCCC-CCCCCcCCCCCCCcCCChHHHHHHHH-HhCCCCCCCCCC
Confidence            44555 56677777777777777777777776 677777777765

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.15  E-value=1.1e-11  Score=71.85  Aligned_cols=42  Identities=17%  Similarity=0.275  Sum_probs=33.4

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCP  278 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  278 (292)
                      |++ +|++++||+|++  |++.|.+...|..|++ .|.+++||.|+
T Consensus         1 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSS-GSSGENPYECSE--CGKAFNRKDQLISHQR-THAGESGPSSG   42 (42)
T ss_dssp             CCS-SSSSCCSEECSS--SCCEESSHHHHHHHHG-GGCCCCSCCCC
T ss_pred             CCC-CCCCCCCccCCC--cChhhCCHHHHHHHHH-hcCCCCCCCCC
Confidence            344 688888888876  8888888888888887 68888888874

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=4.3e-12  Score=75.13  Aligned_cols=43  Identities=26%  Similarity=0.376  Sum_probs=31.0

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2yu8_A            3 SGSSG-TGEKPYKCNECGKVFTQNSHLARHRR-VHTGGKPSGPSS   45 (46)
T ss_dssp             CCCCC-CCCSSEECSSSCCEESSSHHHHHHTH-HHHSCCCSCSCC
T ss_pred             cCcCC-CCCCCeECCcCCchhCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            55556 55677777777777777777777776 677777777765

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=6.6e-12  Score=74.32  Aligned_cols=44  Identities=25%  Similarity=0.440  Sum_probs=30.8

Q ss_pred             HHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       203 ~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      +|+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         2 ~H~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2en1_A            2 SSGSSG-SGEKPFKCEECGKRFTQNSQLHSHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             CSTTCC-CCCCSEEETTTTEEESSHHHHHHHGG-GGSCCCCSCCCC
T ss_pred             CcccCC-CCCCCeeCCCCCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            355566 55677777777777777777777766 677777777755

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=6.7e-12  Score=74.29  Aligned_cols=43  Identities=21%  Similarity=0.329  Sum_probs=30.4

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         3 h~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2en6_A            3 SGSSG-SGEKPYGCNECGKTFSQKSILSAHQR-THTGEKPSGPSS   45 (46)
T ss_dssp             CSCCC-CSSCCEEETTTTEEESSHHHHHHHHH-HHSSCCCSSSCC
T ss_pred             CCCcc-CCCcCeECCCCCcccCchHHHHHHHH-HcCCCCCCCCCC
Confidence            45555 55677777777777777777777776 677777777765

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=1.1e-11  Score=73.39  Aligned_cols=43  Identities=23%  Similarity=0.305  Sum_probs=30.7

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|++++||+|++
T Consensus         3 H~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2yso_A            3 SGSSG-SREKSHQCRECGEIFFQYVSLIEHQV-LHMGQKNSGPSS   45 (46)
T ss_dssp             CSCCS-SCCCCEECTTTCCEESSHHHHHHHHH-HHSCCSCCCTTC
T ss_pred             ccccc-CCCCCEEccccChhhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            45555 55677777777777777777777776 677777777765

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=8.6e-12  Score=73.82  Aligned_cols=43  Identities=21%  Similarity=0.322  Sum_probs=29.3

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .+++||.|.+|++.|.....|..|++ +|.+++||+|.+
T Consensus         3 h~~~h-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2elz_A            3 SGSSG-SVEKPYKCEDCGKGYNRRLNLDMHQR-VHMGEKTSGPSS   45 (46)
T ss_dssp             CCSCC-CCCSSCBCSSSCCBCSSHHHHHHHGG-GGGSCCCCCSCC
T ss_pred             CCCCC-CCCCCeeCcccCchhCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            44555 55667777777777777777777766 677777777755

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=6.9e-12  Score=74.24  Aligned_cols=43  Identities=26%  Similarity=0.347  Sum_probs=31.4

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2ep3_A            3 SGSSG-TGEKPYRCAECGKAFTDRSNLFTHQK-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSS-SCCCSEECSSSCCEESSHHHHHHHHT-TTTTSCCCCTTC
T ss_pred             CCCCC-CCCCCeECCCCCchhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            55666 56677777777777777777777776 677777777764

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=7.7e-12  Score=74.02  Aligned_cols=43  Identities=26%  Similarity=0.312  Sum_probs=28.5

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2em7_A            3 SGSSG-TGEKPYKCEECGKGFICRRDLYTHHM-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSS-SCCCSEECSSSCCEESCHHHHHHHGG-GGTTCCCSSTTC
T ss_pred             CCCCC-CCCcCccCCCccchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            44455 55566777777777777777777766 677777777755

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.3e-11  Score=73.06  Aligned_cols=43  Identities=23%  Similarity=0.301  Sum_probs=34.8

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||+|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2enf_A            3 SGS-SGTGEKPYKCNE--CGKVFTQNSHLVRHRG-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCCCCCSCBCSS--SCCBCSSHHHHHHHHT-TTTTSSCCCCSC
T ss_pred             CCc-CCCCCcCeECCC--CCcccCCHHHHHHHHH-hhCCCCCCCCCC
Confidence            555 788888888876  8888888888888887 688888888874

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=1e-11  Score=73.46  Aligned_cols=43  Identities=21%  Similarity=0.283  Sum_probs=32.9

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|.+++||+|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGS-SGTGQRPYECIE--CGKAFKTKSSLICHRR-SHTGEKPSGPSS   45 (46)
T ss_dssp             SCC-CCCCSSSEECSS--SCCEESSHHHHHHHHH-HHSSSSCCCCCC
T ss_pred             Ccc-ccCCCcCcCCCC--CCCccCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            445 677788888866  8888888888888887 688888888864

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.14  E-value=7.4e-12  Score=76.88  Aligned_cols=51  Identities=18%  Similarity=0.182  Sum_probs=37.4

Q ss_pred             ccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCC
Q psy11068        222 KQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFP  276 (292)
Q Consensus       222 ~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~  276 (292)
                      +.|.....|..|++ +|.+++||.|.+  |++.|.+...|..|++ .|++++||.
T Consensus         4 k~~~~~~~l~~h~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~kp~~   54 (54)
T 1yui_A            4 KRAKHPPGTEKPRS-RSQSEQPATCPI--CYAVIRQSRNLRRHLE-LRHFAKPGV   54 (54)
T ss_dssp             CCCSCSSCCCCCHH-HHTSSCCEECTT--TCCEESSHHHHHHHHH-HHTTTSCCC
T ss_pred             cccCCCcchhhHHH-hcCCCCCccCCC--CCcccCCHHHHHHHHH-HhccCCCCC
Confidence            56667777777776 677777777766  7777777777777777 577777763

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.14  E-value=1.1e-11  Score=73.42  Aligned_cols=43  Identities=23%  Similarity=0.276  Sum_probs=33.1

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|.+++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emj_A            3 SGS-SGTGEKPFECAE--CGKSFSISSQLATHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCCCCCSEECSS--SSCEESSHHHHHHHHH-HHTTSCSSSSCC
T ss_pred             CCC-CCCCCCCEECCC--CCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            455 677888888866  8888888888888887 588888888864

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.4e-11  Score=71.30  Aligned_cols=39  Identities=26%  Similarity=0.340  Sum_probs=29.7

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCP  278 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  278 (292)
                      +|.+++||.|.+  |++.|.+...|..|++ .|.+++||.|.
T Consensus         4 ~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~   42 (42)
T 2yte_A            4 GSSGEKPYSCAE--CKETFSDNNRLVQHQK-MHTVKSGPSSG   42 (42)
T ss_dssp             SSCSCCSCBCTT--TCCBCSSHHHHHHHHH-HTSCCSSCCCC
T ss_pred             CcCCCCCeECCC--CCCccCCHHHHHHHHH-HhCCCCCCCCC
Confidence            677777788866  8888887788888877 57777777773

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.4e-11  Score=72.85  Aligned_cols=43  Identities=23%  Similarity=0.306  Sum_probs=35.2

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eq2_A            3 SGS-SGTGGKPYQCNE--CGKAFSQTSKLARHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-SSSSSCSSSCCS--SCCCCSSHHHHHHHGG-GGCCCCCCCCCC
T ss_pred             ccc-ccCCCCCeECCC--CCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            555 788888888877  8888888888888887 688888888874

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.4e-11  Score=72.92  Aligned_cols=43  Identities=23%  Similarity=0.312  Sum_probs=35.0

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|.+++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2yti_A            3 SGS-SGTGEKPYKCNE--CGKVFTQNSHLARHRG-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCSCCCTTCCSS--SCCCCSSHHHHHHHHT-TTSCSCCSSTTC
T ss_pred             CCc-CCCCCcCeECCC--CCcccCChhHHHHHhH-hcCCCCCCCCCC
Confidence            555 788888888877  8888888888888887 688888888874

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.7e-11  Score=72.53  Aligned_cols=43  Identities=21%  Similarity=0.285  Sum_probs=35.9

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2yth_A            3 SGS-SGSGEKPFQCEE--CGKRFTQNSHLHSHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCS-CCCCSSSBCCSS--SCCCBSSHHHHHHHGG-GGTTCCCSSCCC
T ss_pred             ccc-CCCCCcCCCCCC--CCcccCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            555 788888888877  9988988888988888 688888888874

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.4e-11  Score=72.86  Aligned_cols=43  Identities=23%  Similarity=0.272  Sum_probs=35.5

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|.+++||+|.+  |++.|.+...|.+|++ .|.+++||.|++
T Consensus         3 h~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGS-SGTGEKPYKCQV--CGKAFRVSSHLVQHHS-VHSGERPSGPSS   45 (46)
T ss_dssp             CSS-SCSSCCSCBCSS--SCCBCSSHHHHHHHTT-TTTSCCSCTTSC
T ss_pred             CCC-CCCCCcccCCCC--CCcccCcHHHHHHHHH-hcCCCCCCCCCC
Confidence            445 788888888877  8888888888888888 688888888874

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.3e-11  Score=73.07  Aligned_cols=43  Identities=19%  Similarity=0.288  Sum_probs=34.3

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||+|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SGS-SGTGERHYECSE--CGKAFARKSTLIMHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-SSCCCCCEECSS--SCCEESSHHHHHHHHT-TTSCCCCCSSCC
T ss_pred             ccc-CcCCCCCeECCc--CCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            455 788888888876  8888888888888887 688888888874

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.6e-11  Score=72.61  Aligned_cols=43  Identities=21%  Similarity=0.241  Sum_probs=34.4

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|.+++||.|.+  |++.|.++..|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ep1_A            3 SGS-SGTGEKPYECSD--CGKSFIKKSQLHVHQR-IHTGENPSGPSS   45 (46)
T ss_dssp             CCC-CCSSCCSSCCSS--SCCCCSSHHHHHHHHG-GGSSSCCCSSSC
T ss_pred             ccc-CCCCCCCcCCCC--CCchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            555 688888888876  8888888888888887 688888888864

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.5e-11  Score=72.78  Aligned_cols=43  Identities=23%  Similarity=0.273  Sum_probs=33.9

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|.+++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2emg_A            3 SGS-SGTGENPFICSE--CGKVFTHKTNLIIHQK-IHTGERPSGPSS   45 (46)
T ss_dssp             CCC-CCCSCCSCBCTT--TCCBCSSHHHHHHHHT-TTSCCCCSCSCC
T ss_pred             CCC-CCCCCCCEECCc--cCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            445 678888888876  8888888888888887 688888888864

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=8.5e-12  Score=73.83  Aligned_cols=43  Identities=23%  Similarity=0.360  Sum_probs=30.3

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|++|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~h-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2ysp_A            3 SGSSG-TGEKPYKCEKCGKGYNSKFNLDMHQK-VHTGERPSGPSS   45 (46)
T ss_dssp             CCCCC-SSCCSEEETTTTEEESCHHHHHHHHT-TSCSCCSSCCSC
T ss_pred             CCcCC-CCCCCeECCCCCCccCCHHHHHHHHH-hhCCCCCCCCCC
Confidence            45555 55677777777777777777777766 677777777765

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.13  E-value=1e-11  Score=73.50  Aligned_cols=43  Identities=28%  Similarity=0.407  Sum_probs=28.0

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||+|.+
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2em9_A            3 SGSSG-TGEKPYNCKECGKSFRWASCLLKHQR-VHSGEKPSGPSS   45 (46)
T ss_dssp             SCCSC-CCCCSEECSSSCCEESSHHHHHHHGG-GGTSCCCCSTTC
T ss_pred             CCCCC-CCCcCeECCccccccCChHHHHHHHH-HhCCCCCCCCCC
Confidence            44555 45566777777777777677777765 666666676654

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.13  E-value=3.8e-11  Score=71.70  Aligned_cols=43  Identities=19%  Similarity=0.351  Sum_probs=34.8

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCCccCCc
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGK  284 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~  284 (292)
                      .|.++++|.|.+  |++.|.+...|..|++ .|.+++||.|++  |+|
T Consensus         6 ~~~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~--C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEI--CGKIFRDVYHLNRHKL-SHSGEKPYSSGP--SSG   48 (48)
T ss_dssp             CCCCCCSEEETT--TTEEESSHHHHHHHGG-GSCSCCCCCSCC--CCC
T ss_pred             CCCCCcCeeCCC--CCcccCCHHHHHHHHH-hcCCCCCccCCC--CCC
Confidence            466778888876  8888888888888888 688888888887  875

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.13  E-value=1.1e-11  Score=73.31  Aligned_cols=43  Identities=21%  Similarity=0.265  Sum_probs=29.3

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|.+
T Consensus         3 h~~~h-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2el6_A            3 SGSSG-AGVNPYKCSQCEKSFSGKLRLLVHQR-MHTREKPSGPSS   45 (46)
T ss_dssp             SCCSS-CCCCSEECSSSSCEESSHHHHHHHHG-GGCCSSCCSCCC
T ss_pred             CCCCC-CCCCCeECCCCCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            34455 55667777777777777777777766 677777777755

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.6e-11  Score=72.65  Aligned_cols=43  Identities=23%  Similarity=0.272  Sum_probs=35.8

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|.+++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~p~~C~~   45 (46)
T 2yts_A            3 SGS-SGTGEKPYICNE--CGKSFIQKSHLNRHRR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CSC-CCCSCCSEECSS--SCCEESSHHHHHHHGG-GTSSCCSSCCCC
T ss_pred             CCC-CCCCCcCEECCC--CChhhCChHHHHHHHH-hcCCCCCcCCCC
Confidence            555 788888888877  8888888888888888 688888888874

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.3e-11  Score=72.97  Aligned_cols=43  Identities=21%  Similarity=0.274  Sum_probs=32.3

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eow_A            3 SGS-SGTGEKPYKCNE--CGKAFRARSSLAIHQA-THSGEKPSGPSS   45 (46)
T ss_dssp             CCC-CSCCCCCEECTT--SCCEESSHHHHHHHHH-HHCCCSCSCTTC
T ss_pred             ccC-CCCCCCCeeccc--cCChhcCHHHHHHHHH-HcCCCCCCCCCC
Confidence            445 677777888866  8888888888888877 577777887764

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.6e-11  Score=72.61  Aligned_cols=43  Identities=26%  Similarity=0.337  Sum_probs=33.8

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SGS-SGTGEKPFECSE--CQKAFNTKSNLIVHQR-THTGEKPSGPSS   45 (46)
T ss_dssp             CCC-SSCCCCSEECSS--SCCEESSHHHHHHHHH-TSCSSSSSCCCC
T ss_pred             CCC-CCCCCCCcCCCC--CCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            445 678888888876  8888888888888887 688888888864

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.8e-11  Score=72.42  Aligned_cols=43  Identities=23%  Similarity=0.275  Sum_probs=34.3

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|.+++||.|.+  |++.|.+...|..|++ .|++++||.|+.
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2em6_A            3 SGS-SGMGEKCYKCDV--CGKEFSQSSHLQTHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCS-CCCCCCCCBCSS--SCCBCSSHHHHHHHHT-TTSSSCCCCTTC
T ss_pred             Ccc-ccCCCCCeECCC--CCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            555 688888888876  8888888888888887 688888888864

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.12  E-value=3.4e-11  Score=70.79  Aligned_cols=42  Identities=24%  Similarity=0.380  Sum_probs=32.8

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCCccCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCG  283 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~  283 (292)
                      +|++++||.|.+  |++.|.++..|..|++ .|.+++||.|++  ||
T Consensus         4 ~h~~~k~~~C~~--C~k~f~~~~~l~~H~~-~H~~~~~~~C~~--cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPV--CGLRFKRKDRMSYHVR-SHDGSVGKSGPS--SG   45 (45)
T ss_dssp             CCSSCCSSEETT--TTEECSCHHHHHHHHH-HHSCCCCCCCCC--CC
T ss_pred             CcCCCCCCcCCC--CCcccCCHHHHHHHHH-HccCCCCCCCcC--CC
Confidence            577778888866  8888888888888887 578888888877  75

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=4.9e-12  Score=74.88  Aligned_cols=43  Identities=23%  Similarity=0.401  Sum_probs=30.2

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||+|++
T Consensus         3 H~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytg_A            3 SGSSG-TGEKPFKCGECGKSYNQRVHLTQHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCC-SSCCSEECTTTCCEESSSHHHHTTGG-GGSSCCSSCSCC
T ss_pred             CCCCC-CCCCCeECCCCCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            55555 55677777777777777777777766 677777777765

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.4e-11  Score=72.90  Aligned_cols=43  Identities=21%  Similarity=0.330  Sum_probs=32.4

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~~~~~C~~--C~k~F~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGS-SGTGEKPYECKV--CSKAFTQKAHLAQHQK-THTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCSSCCSEECSS--SCCEESSHHHHHHHHH-HHCCCCCCCSCC
T ss_pred             CCC-CCCCCcCeECCC--CCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            455 677778888866  8888888888888877 577778887764

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.7e-11  Score=72.47  Aligned_cols=43  Identities=19%  Similarity=0.277  Sum_probs=34.5

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|+.
T Consensus         3 H~~-~H~~~~~~~C~~--C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emi_A            3 SGS-SGTGERHYECSE--CGKAFIQKSTLSMHQR-IHRGEKPSGPSS   45 (46)
T ss_dssp             CCC-SCSSCCCEECSS--SCCEESSHHHHHHHHG-GGCSCCCCSCCC
T ss_pred             CCc-ccCCCCCCCCCC--CCcccCCHHHHHHHHh-HhCCCCCCCCCC
Confidence            555 788888888876  8888888888888887 688888888864

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.12  E-value=9.7e-11  Score=76.37  Aligned_cols=62  Identities=26%  Similarity=0.483  Sum_probs=51.8

Q ss_pred             CCCCCCcccccCCCCcccccChHHHHhHHhhccCCCccccccCCCCcccccccccchHHHHHhHhhc
Q psy11068         50 NSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH  116 (292)
Q Consensus        50 ~~~~~~~~~C~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h  116 (292)
                      .....++|.|.+..|++.|.....|..|+++|+++++|.|.+..     |++.|.....|.+|+++|
T Consensus        11 ~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~-----C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKG-----CERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTT-----CCCEESSHHHHHHHTTTC
T ss_pred             CccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCC-----CCcccCCHHHHHhHhhcC
Confidence            34556789998545999999999999999999999999995211     999999999999998875

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.7e-11  Score=72.48  Aligned_cols=43  Identities=26%  Similarity=0.315  Sum_probs=32.6

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 h~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGS-SGAGKKLFKCNE--CKKTFTQSSSLTVHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCS-SCCSSCCCBCTT--TCCBCSSHHHHHHHHH-HHTSSCCCSCCC
T ss_pred             CCC-CCCCCCCEECCc--cCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            444 677788888866  8888888888888877 577888888764

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.3e-11  Score=72.97  Aligned_cols=43  Identities=19%  Similarity=0.254  Sum_probs=32.2

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|.+++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~-~H~~~kp~~C~~   45 (46)
T 2eor_A            3 SGS-SGTGEKPYNCEE--CGKAFIHDSQLQEHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             SSS-SSSCCCSEECTT--TCCEESSHHHHHHHHH-HHHSCCCSSSTT
T ss_pred             CCc-CcCCCcCccCCC--CCCCcCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            445 677777888866  8888888888888877 577777887764

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.8e-11  Score=72.40  Aligned_cols=43  Identities=21%  Similarity=0.247  Sum_probs=34.9

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|.+++||.|.+  |++.|.+...|..|++ .|.+++||.|+.
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eq1_A            3 SGS-SGTGEKPYKCNE--CGKAFRAHSNLTTHQV-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCCCSCCCCCTT--TTCCCSSHHHHHHHHT-TTCCSCCSSCCC
T ss_pred             ccc-ccCCCCCeECCc--CChhhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            555 788888888876  8888888888888888 688888888864

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.4e-11  Score=72.94  Aligned_cols=43  Identities=23%  Similarity=0.300  Sum_probs=29.0

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|++|++.|.....|..|++ +|.+++||.|++
T Consensus         3 h~~~h-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2em8_A            3 SGSSG-SGEKPYKCVECGKGYKRRLDLDFHQR-VHTGEKLSGPSS   45 (46)
T ss_dssp             CCCCC-CSCCSEECSSSCCEESSHHHHHHHHH-HHHCCCCCCSCC
T ss_pred             CCCCC-CCCCCeECcccCchhCCHHHHHHHHH-HHcCCCCCCCCC
Confidence            34455 55667777777777777777777766 677777777755

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.8e-11  Score=72.36  Aligned_cols=43  Identities=23%  Similarity=0.441  Sum_probs=30.6

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||+|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2em2_A            3 SGSSG-SGEKPFKCKECGKAFRQNIHLASHLR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSC-CCCCSEECSSSCCEESSHHHHHHHHH-HHCCCCSSCSSC
T ss_pred             CCCCC-CCCCCEECCcCCchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            45555 56677777777777777777777776 677777777754

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2e-11  Score=71.39  Aligned_cols=42  Identities=24%  Similarity=0.330  Sum_probs=32.6

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCP  278 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  278 (292)
                      |++ +|.+++||.|.+  |++.|.+...|..|++ .|.+++||.|+
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2eof_A            3 SGS-SGTGEKPYECNE--CQKAFNTKSNLMVHQR-THTGESGPSSG   44 (44)
T ss_dssp             CSS-CCSCCCSEECTT--TCCEESCHHHHHHHHH-HTTTSSCSCCC
T ss_pred             Ccc-CCCCCCCeECCC--CCcccCCHhHHHHHHH-HhCCCCCCCCC
Confidence            555 677888888866  8888888888888887 68888888774

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.8e-11  Score=72.37  Aligned_cols=43  Identities=19%  Similarity=0.295  Sum_probs=34.7

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|.+++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         3 H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2yrj_A            3 SGS-SGTGEKPYRCGE--CGKAFAQKANLTQHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCCCCCCEECSS--SCCEESSHHHHHHHHT-TTSSCCSSCSCC
T ss_pred             Ccc-CCCCCCCeECCC--CCCccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            555 788888888876  8888888888888887 688888888874

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2e-11  Score=71.40  Aligned_cols=42  Identities=21%  Similarity=0.241  Sum_probs=33.6

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCP  278 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  278 (292)
                      |++ +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|+
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2en7_A            3 SGS-SGTGMKPYVCNE--CGKAFRSKSYLIIHTR-THTGESGPSSG   44 (44)
T ss_dssp             SCC-CSSSSSSSCCTT--TCCCCSSHHHHHHHHT-TTCCSSSSCCC
T ss_pred             CCc-CCCCCcCeECCC--CCCccCCHHHHHHHhh-hcCCCCCCCCC
Confidence            555 688888888876  8888888888888887 68888888874

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.6e-11  Score=71.87  Aligned_cols=42  Identities=21%  Similarity=0.300  Sum_probs=33.1

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCP  278 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  278 (292)
                      |++ +|++++||+|.+  |++.|.+...|..|++ .|.+++||.|+
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGS-SGTGENPYECCE--CGKVFSRKDQLVSHQK-THSGQSGPSSG   44 (44)
T ss_dssp             SCC-SSSSCCSCEETT--TTEECSSHHHHHHHHT-TSSSSCSCCCC
T ss_pred             Ccc-ccCCCcCeeCCC--CCCccCCHHHHHHHHH-HcCCCCCCCCC
Confidence            555 688888888876  8888888888888887 68888888874

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.11  E-value=1.5e-11  Score=75.55  Aligned_cols=52  Identities=13%  Similarity=0.122  Sum_probs=41.7

Q ss_pred             CcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCccc
Q psy11068        192 GKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFK  245 (292)
Q Consensus       192 ~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~  245 (292)
                      ++.|.....|..|+++| .++++|.|.+|++.|.....|..|++ +|++++||.
T Consensus         3 ~k~~~~~~~l~~h~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRS-QSEQPATCPICYAVIRQSRNLRRHLE-LRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHH-TSSCCEECTTTCCEESSHHHHHHHHH-HHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhc-CCCCCccCCCCCcccCCHHHHHHHHH-HhccCCCCC
Confidence            45677777888888888 66788888888888888888888887 788888774

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.2e-11  Score=72.05  Aligned_cols=42  Identities=19%  Similarity=0.308  Sum_probs=30.7

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCP  278 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  278 (292)
                      |++ +|++++||+|.+  |++.|.+...|..|++ .|++++||.|+
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGS-SGSGKKPYECKE--CRKTFIQIGHLNQHKR-VHTGERSSGPS   44 (46)
T ss_dssp             CCC-SCCCSCSCCCSS--SCCCCSSHHHHHHHHH-HCSSCCSCSTT
T ss_pred             CCC-CcCCCCCcCCCC--cCchhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            444 677777777766  7777777777777777 57777777775

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.10  E-value=1.7e-11  Score=72.57  Aligned_cols=43  Identities=23%  Similarity=0.448  Sum_probs=32.0

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emj_A            3 SGSSG-TGEKPFECAECGKSFSISSQLATHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCC-CCCCSEECSSSSCEESSHHHHHHHHH-HHTTSCSSSSCC
T ss_pred             CCCCC-CCCCCEECCCCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            55566 56677888888888888888888877 777778887753

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.7e-11  Score=72.80  Aligned_cols=44  Identities=23%  Similarity=0.314  Sum_probs=24.0

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++.+|.+++||.|.+
T Consensus         3 H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~   46 (47)
T 2epx_A            3 SGSSG-TGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS   46 (47)
T ss_dssp             CCCCC-CCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCC
T ss_pred             ccccc-CCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCC
Confidence            33444 444556666666666665566665543455555565544

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.9e-11  Score=70.69  Aligned_cols=41  Identities=22%  Similarity=0.294  Sum_probs=35.3

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPC  277 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  277 (292)
                      |++ +|.+++||.|++  |++.|.+...|..|++ .|.+++||.|
T Consensus         2 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSG-SSGGEKPYRCDQ--CGKAFSQKGSLIVHIR-VHTGSGPSSG   42 (42)
T ss_dssp             CCC-CCCSCCSBCCTT--TTCCBSSHHHHHTTGG-GTSCCSCCCC
T ss_pred             Ccc-ccCCCCCeeCCC--ccchhCCHHHHHHHHH-HhCCCCCCCC
Confidence            555 788899999977  9999999999999998 6999999887

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.7e-11  Score=72.43  Aligned_cols=43  Identities=23%  Similarity=0.349  Sum_probs=33.4

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eow_A            3 SGSSG-TGEKPYKCNECGKAFRARSSLAIHQA-THSGEKPSGPSS   45 (46)
T ss_dssp             CCCCS-CCCCCEECTTSCCEESSHHHHHHHHH-HHCCCSCSCTTC
T ss_pred             ccCCC-CCCCCeeccccCChhcCHHHHHHHHH-HcCCCCCCCCCC
Confidence            55666 56778888888888888888888877 788888888863

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=2.2e-11  Score=72.06  Aligned_cols=43  Identities=26%  Similarity=0.323  Sum_probs=32.9

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|++++||+|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGSSG-TGQRPYECIECGKAFKTKSSLICHRR-SHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCC-CCSSSEECSSSCCEESSHHHHHHHHH-HHSSSSCCCCCC
T ss_pred             Ccccc-CCCcCcCCCCCCCccCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            55666 56678888888888888888888877 788888888763

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.8e-11  Score=72.41  Aligned_cols=43  Identities=16%  Similarity=0.245  Sum_probs=32.4

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|+.
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2eoz_A            3 SGS-SGTGEKPYSCNV--CGKAFVLSAHLNQHLR-VHTQETLSGPSS   45 (46)
T ss_dssp             SCC-CCSSCCSEEETT--TTEEESSHHHHHHHHH-HHSSCCSSSCCC
T ss_pred             ccc-cCCCCCCeECcc--cChhhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            555 677778888866  8888888888888877 577778887763

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=2.3e-11  Score=70.36  Aligned_cols=41  Identities=20%  Similarity=0.255  Sum_probs=34.1

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPC  277 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  277 (292)
                      |++ +|++++||+|.+  |++.|.+...|..|++ .|.+++||.|
T Consensus         2 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C   42 (42)
T 2eos_A            2 SSG-SSGGEKPYPCEI--CGTRFRHLQTLKSHLR-IHTGSGPSSG   42 (42)
T ss_dssp             CCS-CCSSSCCBCCSS--SCCCBSSHHHHHHHTT-TTSCCSSTTC
T ss_pred             CCc-ccCCCCCEECCC--CCCccCCHHHHHHHHH-hcCCCCCCCC
Confidence            444 788888888877  8888888888888888 6888888887

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.10  E-value=2.2e-11  Score=70.50  Aligned_cols=42  Identities=19%  Similarity=0.328  Sum_probs=30.3

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCC
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  247 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  247 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|+
T Consensus         1 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGS-SGENPYECSECGKAFNRKDQLISHQR-THAGESGPSSG   42 (42)
T ss_dssp             CCSSS-SSCCSEECSSSCCEESSHHHHHHHHG-GGCCCCSCCCC
T ss_pred             CCCCC-CCCCCccCCCcChhhCCHHHHHHHHH-hcCCCCCCCCC
Confidence            34455 56677777777777777777777776 77777777773

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.8e-11  Score=72.34  Aligned_cols=43  Identities=23%  Similarity=0.341  Sum_probs=33.9

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|..|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2enf_A            3 SGSSG-TGEKPYKCNECGKVFTQNSHLVRHRG-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCC-CCCCSCBCSSSCCBCSSHHHHHHHHT-TTTTSSCCCCSC
T ss_pred             CCcCC-CCCcCeECCCCCcccCCHHHHHHHHH-hhCCCCCCCCCC
Confidence            55666 66788888888888888888888877 788888888863

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2e-11  Score=72.20  Aligned_cols=44  Identities=27%  Similarity=0.346  Sum_probs=33.2

Q ss_pred             HHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       203 ~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      +|+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         2 ~H~~~H-~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSG-TGEKPYECKVCSKAFTQKAHLAQHQK-THTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCC-SSCCSEECSSSCCEESSHHHHHHHHH-HHCCCCCCCSCC
T ss_pred             CCCCCC-CCCcCeECCCCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            355666 56678888888888888888888877 788888888753

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=2.7e-11  Score=70.85  Aligned_cols=42  Identities=19%  Similarity=0.342  Sum_probs=34.7

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCP  278 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  278 (292)
                      |++ +|.+++||.|.+  |++.|.+...|..|++ .|.+++||.|+
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2emb_A            3 SGS-SGHTRKRYECSK--CQATFNLRKHLIQHQK-THAAKSGPSSG   44 (44)
T ss_dssp             CCS-CCCCCSSEECTT--TCCEESCHHHHHHHGG-GGCCCCCTTCC
T ss_pred             ccc-ccCCCCCeECCC--CCCccCCHHHHHHHHH-HcCCCCCcCCC
Confidence            555 788888888877  8888888888888888 68888888884

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=3.3e-11  Score=69.65  Aligned_cols=41  Identities=20%  Similarity=0.317  Sum_probs=32.3

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccC
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  246 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C  246 (292)
                      |+++| .+++||.|.+|++.|.....|..|++ +|.+++||+|
T Consensus         1 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C   41 (42)
T 2yte_A            1 GSSGS-SGEKPYSCAECKETFSDNNRLVQHQK-MHTVKSGPSS   41 (42)
T ss_dssp             CCSSS-CSCCSCBCTTTCCBCSSHHHHHHHHH-HTSCCSSCCC
T ss_pred             CCcCc-CCCCCeECCCCCCccCCHHHHHHHHH-HhCCCCCCCC
Confidence            34556 66778888888888888888888877 7888888887

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2e-11  Score=72.19  Aligned_cols=42  Identities=26%  Similarity=0.364  Sum_probs=32.0

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCP  278 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  278 (292)
                      |++ +|++++||+|.+  |++.|.+...|..|++ .|.+++||.|+
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2yto_A            3 SGS-SGTGEKPYKCSD--CGKAFTRKSGLHIHQQ-SHTGERHSGPS   44 (46)
T ss_dssp             CCC-CCCSCCCEECSS--SCCEESSHHHHHHHHH-HHTCCCBTTTB
T ss_pred             ccc-ccCCCCCEECcc--cCCccCCHhHHHHHHH-HcCCCCCCCCC
Confidence            555 677778888866  8888888888888877 57778888776

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=1.6e-11  Score=72.58  Aligned_cols=43  Identities=23%  Similarity=0.343  Sum_probs=33.9

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SGSSG-TGERHYECSECGKAFARKSTLIMHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSS-CCCCCEECSSSCCEESSHHHHHHHHT-TTSCCCCCSSCC
T ss_pred             cccCc-CCCCCeECCcCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            55666 66788888888888888888888877 788888888863

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.2e-11  Score=72.00  Aligned_cols=44  Identities=23%  Similarity=0.367  Sum_probs=33.7

Q ss_pred             HHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       203 ~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      +|+++| .++++|.|..|++.|.....|..|++ +|.+++||.|++
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSG-TGEKPYECSDCGKSFIKKSQLHVHQR-IHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCC-SSCCSSCCSSSCCCCSSHHHHHHHHG-GGSSSCCCSSSC
T ss_pred             ccccCC-CCCCCcCCCCCCchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            355666 56678888888888888888888877 788888888853

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.3e-11  Score=71.92  Aligned_cols=43  Identities=21%  Similarity=0.303  Sum_probs=33.7

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|..|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SGSSG-TGEKPFECSECQKAFNTKSNLIVHQR-THTGEKPSGPSS   45 (46)
T ss_dssp             CCCSS-CCCCSEECSSSCCEESSHHHHHHHHH-TSCSSSSSCCCC
T ss_pred             CCCCC-CCCCCcCCCCCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            55666 66778888888888888888888877 788888888863

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.7e-11  Score=71.65  Aligned_cols=43  Identities=19%  Similarity=0.298  Sum_probs=33.7

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         3 h~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSG-AGKKLFKCNECKKTFTQSSSLTVHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSC-CSSCCCBCTTTCCBCSSHHHHHHHHH-HHTSSCCCSCCC
T ss_pred             CCCCC-CCCCCEECCccCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            55666 66778888888888888888888877 788888888863

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.1e-11  Score=72.13  Aligned_cols=44  Identities=27%  Similarity=0.418  Sum_probs=33.7

Q ss_pred             HHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       203 ~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      +|+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|+.
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSG-TGGKPYQCNECGKAFSQTSKLARHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSS-SSSCSSSCCSSCCCCSSHHHHHHHGG-GGCCCCCCCCCC
T ss_pred             Cccccc-CCCCCeECCCCCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            355666 66778888888888888888888877 788888888853

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.1e-11  Score=72.05  Aligned_cols=43  Identities=23%  Similarity=0.352  Sum_probs=33.7

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2yti_A            3 SGSSG-TGEKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCC-SCCCTTCCSSSCCCCSSHHHHHHHHT-TTSCSCCSSTTC
T ss_pred             CCcCC-CCCcCeECCCCCcccCChhHHHHHhH-hcCCCCCCCCCC
Confidence            55666 66778888888888888888888877 788888888863

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=8.2e-11  Score=69.48  Aligned_cols=40  Identities=23%  Similarity=0.313  Sum_probs=33.6

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         6 ~h~~~~~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ep0_A            6 SGTGEKPYKCDV--CHKSFRYGSSLTVHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             SSTTCCSEECSS--SCCEESSHHHHHHHHT-TTSSSCCCSCCC
T ss_pred             CCCCCCCeeCcc--cCcccCChHHHHHHHH-HhCCCCCCCCCC
Confidence            678888888876  8888888888888888 688888888876

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.8e-11  Score=71.53  Aligned_cols=43  Identities=23%  Similarity=0.380  Sum_probs=33.6

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||+|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2emg_A            3 SGSSG-TGENPFICSECGKVFTHKTNLIIHQK-IHTGERPSGPSS   45 (46)
T ss_dssp             CCCCC-CSCCSCBCTTTCCBCSSHHHHHHHHT-TTSCCCCSCSCC
T ss_pred             CCCCC-CCCCCEECCccCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            55666 56678888888888888888888877 788888888863

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.7e-11  Score=71.60  Aligned_cols=43  Identities=26%  Similarity=0.420  Sum_probs=33.2

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~kp~~C~~   45 (46)
T 2eor_A            3 SGSSG-TGEKPYNCEECGKAFIHDSQLQEHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSS-SCCCSEECTTTCCEESSHHHHHHHHH-HHHSCCCSSSTT
T ss_pred             CCcCc-CCCcCccCCCCCCCcCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            55666 56678888888888888888888877 788888888863

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.08  E-value=3e-11  Score=69.87  Aligned_cols=38  Identities=13%  Similarity=0.241  Sum_probs=29.8

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPC  277 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  277 (292)
                      +|++++||.|.+  |++.|.++..|..|++ .|.+++||.|
T Consensus         5 ~H~~~~~~~C~~--C~k~f~~~~~l~~H~~-~H~~~k~~~C   42 (42)
T 2epc_A            5 SSGGETPYLCGQ--CGKSFTQRGSLAVHQR-SCSQSGPSSG   42 (42)
T ss_dssp             CCCSSCCEECSS--SCCEESSHHHHHHHHH-HTTCCCCCCC
T ss_pred             cCCCCCCeECCC--CCcccCCHHHHHHHhh-hcCCCCCCCC
Confidence            677778888866  8888888888888877 6788888776

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.5e-11  Score=71.79  Aligned_cols=43  Identities=23%  Similarity=0.366  Sum_probs=33.9

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|++++||.|++
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2em6_A            3 SGSSG-MGEKCYKCDVCGKEFSQSSHLQTHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCC-CCCCCCBCSSSCCBCSSHHHHHHHHT-TTSSSCCCCTTC
T ss_pred             Ccccc-CCCCCeECCCCCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            55666 66788888888888888888888877 788888888863

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=3.8e-11  Score=70.95  Aligned_cols=42  Identities=21%  Similarity=0.346  Sum_probs=34.1

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCC
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  247 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  247 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|++++||+|+
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSG-SGKKPYECKECRKTFIQIGHLNQHKR-VHTGERSSGPS   44 (46)
T ss_dssp             CCCSC-CCSCSCCCSSSCCCCSSHHHHHHHHH-HCSSCCSCSTT
T ss_pred             CCCCc-CCCCCcCCCCcCchhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            55666 66788888888888888888888887 78888888886

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=2.4e-11  Score=71.82  Aligned_cols=42  Identities=26%  Similarity=0.450  Sum_probs=32.4

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCC-CCcCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLN-MRMFPCP  278 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~-~~~~~C~  278 (292)
                      |++ +|.+++||.|.+  |++.|.+...|..|++ .|.+ ++||.|+
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~~C~   45 (46)
T 2eoy_A            3 SGS-SGQKEKCFKCNK--CEKTFSCSKYLTQHER-IHTRGVKSGPSS   45 (46)
T ss_dssp             CCC-CCCCSCCEECSS--SCCEESSSHHHHHHHT-TCCSCCTTSSSC
T ss_pred             Ccc-ccCCCCCEECcC--CCCcCCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            445 677888888866  8888888888888887 6877 7888875

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=3e-11  Score=70.69  Aligned_cols=41  Identities=20%  Similarity=0.379  Sum_probs=27.5

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPC  277 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  277 (292)
                      |++ +|.+++||+|.+  |++.|.+...|..|++ .|.+++||.|
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C   43 (44)
T 2yu5_A            3 SGS-SGAGENPFKCSK--CDRVFTQRNYLVQHER-THARKSGPSS   43 (44)
T ss_dssp             CSC-CCSCCCSEECSS--SSCEESSSHHHHHHHH-HCCCCCSSCC
T ss_pred             Ccc-ccCCCCCeECCC--CCchhCCHHHHHHHhH-hcCCCCCCCC
Confidence            444 566677777755  7777777777777766 5667777766

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.4e-11  Score=71.88  Aligned_cols=43  Identities=26%  Similarity=0.459  Sum_probs=33.0

Q ss_pred             HHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCC
Q psy11068        203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  247 (292)
Q Consensus       203 ~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  247 (292)
                      +|+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|+
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2yth_A            2 SSGSSG-SGEKPFQCEECGKRFTQNSHLHSHQR-VHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCC-CCSSSBCCSSSCCCBSSHHHHHHHGG-GGTTCCCSSCC
T ss_pred             CcccCC-CCCcCCCCCCCCcccCCHHHHHHHHH-hcCCCCCCCCC
Confidence            355666 56678888888888888888888877 78888888875

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=3.4e-11  Score=71.16  Aligned_cols=40  Identities=20%  Similarity=0.385  Sum_probs=33.0

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|+.
T Consensus         6 ~h~~~k~~~C~~--C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2enh_A            6 SGTGEKPYECDV--CRKAFSHHASLTQHQR-VHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSCBCTT--TCCBCSSSHHHHHHGG-GSCCSCCCCCCC
T ss_pred             CcCCCCCcCCCC--cCchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            688888888876  8888888888888888 688888888863

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.5e-11  Score=71.79  Aligned_cols=43  Identities=26%  Similarity=0.425  Sum_probs=32.8

Q ss_pred             HHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCC
Q psy11068        203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  247 (292)
Q Consensus       203 ~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  247 (292)
                      +|+++| .++++|.|.+|++.|.....|..|++ +|.+++||+|+
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSG-TGEKPYSCNVCGKAFVLSAHLNQHLR-VHTQETLSGPS   44 (46)
T ss_dssp             CSCCCC-SSCCSEEETTTTEEESSHHHHHHHHH-HHSSCCSSSCC
T ss_pred             CccccC-CCCCCeECcccChhhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            355666 56678888888888888888888877 78888888875

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=3e-11  Score=70.68  Aligned_cols=43  Identities=16%  Similarity=0.275  Sum_probs=39.2

Q ss_pred             HHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCC
Q psy11068        203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  247 (292)
Q Consensus       203 ~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  247 (292)
                      +|+++| .+++||.|.+|++.|.....|..|++ +|.+++||+|+
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSG-AGENPFKCSKCDRVFTQRNYLVQHER-THARKSGPSSG   44 (44)
T ss_dssp             CCSCCC-SCCCSEECSSSSCEESSSHHHHHHHH-HCCCCCSSCCC
T ss_pred             CCcccc-CCCCCeECCCCCchhCCHHHHHHHhH-hcCCCCCCCCC
Confidence            467777 77899999999999999999999998 89999999984

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=3.1e-11  Score=70.59  Aligned_cols=42  Identities=19%  Similarity=0.313  Sum_probs=31.3

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCC
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  247 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  247 (292)
                      |+++| .++++|.|..|++.|.....|..|++ +|.+++||.|+
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2eof_A            3 SGSSG-TGEKPYECNECQKAFNTKSNLMVHQR-THTGESGPSSG   44 (44)
T ss_dssp             CSSCC-SCCCSEECTTTCCEESCHHHHHHHHH-HTTTSSCSCCC
T ss_pred             CccCC-CCCCCeECCCCCcccCCHhHHHHHHH-HhCCCCCCCCC
Confidence            55666 56677888888888888888888877 67777777773

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=5.4e-11  Score=70.27  Aligned_cols=40  Identities=23%  Similarity=0.274  Sum_probs=32.9

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      +|.+++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         6 ~h~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytt_A            6 SGEGEKPYQCSE--CGKSFSGSYRLTQHWI-THTREKPSGPSS   45 (46)
T ss_dssp             SCSCCCTTCCSS--SCCCCSSHHHHHHHHT-HHHHCCCCSCCC
T ss_pred             CCCCCCCeeCCC--CCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            678888888876  8888888888888887 688888888876

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.2e-11  Score=70.49  Aligned_cols=41  Identities=20%  Similarity=0.233  Sum_probs=31.9

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPC  277 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  277 (292)
                      |++ +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|
T Consensus         2 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C   42 (42)
T 2en2_A            2 SSG-SSGGEKPYKCET--CGARFVQVAHLRAHVL-IHTGSGPSSG   42 (42)
T ss_dssp             CCC-CCCSSCSEECTT--TCCEESSHHHHHHHTH-HHHSCCSSCC
T ss_pred             CCc-ccCCCCCEeCCC--cChhhCCHHHHHHHHH-HcCCCCCCCC
Confidence            344 677888888866  8888888888888887 6888888877

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.2e-11  Score=71.99  Aligned_cols=43  Identities=21%  Similarity=0.242  Sum_probs=31.9

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      |++ +|.+++||+|.+  |++.|.+...|..|++ .|.+++||.|+.
T Consensus         3 h~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emz_A            3 SGS-SGSGERPFKCNE--CGKGFGRRSHLAGHLR-LHSREKSSGPSS   45 (46)
T ss_dssp             CCS-CSSCCCSCCCSS--SCCCCSSHHHHHHHHH-HHHHTTCCCSCC
T ss_pred             CCc-CCCCCCCeECCC--CCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            445 677777788866  8888888888888877 577777777763

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.3e-11  Score=71.91  Aligned_cols=42  Identities=24%  Similarity=0.449  Sum_probs=32.0

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCC
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  247 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  247 (292)
                      |+++| .++++|.|..|++.|.....|..|++ +|.+++||.|+
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~p~~C~   44 (46)
T 2yts_A            3 SGSSG-TGEKPYICNECGKSFIQKSHLNRHRR-IHTGEKPSGPS   44 (46)
T ss_dssp             CSCCC-CSCCSEECSSSCCEESSHHHHHHHGG-GTSSCCSSCCC
T ss_pred             CCCCC-CCCcCEECCCCChhhCChHHHHHHHH-hcCCCCCcCCC
Confidence            55666 56677888888888888888888876 78888888875

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=3.5e-11  Score=71.12  Aligned_cols=42  Identities=24%  Similarity=0.378  Sum_probs=31.7

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCC
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  247 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  247 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|+
T Consensus         3 H~~~H-~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2emi_A            3 SGSSG-TGERHYECSECGKAFIQKSTLSMHQR-IHRGEKPSGPS   44 (46)
T ss_dssp             CCCSC-SSCCCEECSSSCCEESSHHHHHHHHG-GGCSCCCCSCC
T ss_pred             CCccc-CCCCCCCCCCCCcccCCHHHHHHHHh-HhCCCCCCCCC
Confidence            55566 56677888888888888888888877 77778888775

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.9e-11  Score=71.49  Aligned_cols=43  Identities=23%  Similarity=0.368  Sum_probs=32.8

Q ss_pred             HHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCC
Q psy11068        203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  247 (292)
Q Consensus       203 ~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  247 (292)
                      +|+++| .+++||.|.+|++.|.....|..|++ +|.+++||.|+
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSG-TGEKPYKCSDCGKAFTRKSGLHIHQQ-SHTGERHSGPS   44 (46)
T ss_dssp             CCCCCC-CSCCCEECSSSCCEESSHHHHHHHHH-HHTCCCBTTTB
T ss_pred             Cccccc-CCCCCEECcccCCccCCHhHHHHHHH-HcCCCCCCCCC
Confidence            355666 56678888888888888888888877 78888888875

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.6e-11  Score=71.70  Aligned_cols=43  Identities=23%  Similarity=0.387  Sum_probs=32.8

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|..|++.|.....|..|++ +|.+++||.|++
T Consensus         3 H~~~H-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2yrj_A            3 SGSSG-TGEKPYRCGECGKAFAQKANLTQHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCC-CCCCCEECSSSCCEESSHHHHHHHHT-TTSSCCSSCSCC
T ss_pred             CccCC-CCCCCeECCCCCCccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            55666 56678888888888888888888877 788888888753

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=3.3e-11  Score=71.21  Aligned_cols=42  Identities=21%  Similarity=0.318  Sum_probs=32.7

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCP  278 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  278 (292)
                      |++ +|.+++||.|.+  |++.|.+...|..|++ .|.+++||.|+
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2eq3_A            3 SGS-SGTGEKPYECNQ--CGKAFSVRSSLTTHQA-IHTGKKPSGPS   44 (46)
T ss_dssp             CCC-SSCCCCSSEETT--TTEECSSHHHHHHHHT-TSCCCCCCCSC
T ss_pred             ccc-CCCCCCCeECCC--CChhhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            555 677888888866  8888888888888887 68888888886

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.9e-11  Score=71.47  Aligned_cols=42  Identities=24%  Similarity=0.410  Sum_probs=32.7

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCC
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  247 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  247 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|+
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2eq1_A            3 SGSSG-TGEKPYKCNECGKAFRAHSNLTTHQV-IHTGEKPSGPS   44 (46)
T ss_dssp             CCCCC-CCSCCCCCTTTTCCCSSHHHHHHHHT-TTCCSCCSSCC
T ss_pred             ccccc-CCCCCeECCcCChhhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            55666 56678888888888888888888877 78888888875

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=3.3e-11  Score=71.24  Aligned_cols=43  Identities=26%  Similarity=0.422  Sum_probs=33.7

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         3 h~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSG-TGEKPYKCQVCGKAFRVSSHLVQHHS-VHSGERPSGPSS   45 (46)
T ss_dssp             CSSSC-SSCCSCBCSSSCCBCSSHHHHHHHTT-TTTSCCSCTTSC
T ss_pred             CCCCC-CCCcccCCCCCCcccCcHHHHHHHHH-hcCCCCCCCCCC
Confidence            45566 66788888888888888888888877 788888888863

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.06  E-value=2e-12  Score=81.96  Aligned_cols=54  Identities=20%  Similarity=0.394  Sum_probs=39.7

Q ss_pred             HHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHH
Q psy11068        202 KSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALK  262 (292)
Q Consensus       202 ~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~  262 (292)
                      ..|+++| .+++||.|+.|++.|.....|.   + +|.+++||.|++  |++.|.....+.
T Consensus         3 ~~h~~~H-~~~k~~~C~~C~k~F~~~~~l~---~-~H~~~k~~~C~~--C~k~f~~~~~~~   56 (62)
T 1vd4_A            3 ETDERDS-TNRASFKCPVCSSTFTDLEANQ---L-FDPMTGTFRCTF--CHTEVEEDESAM   56 (62)
T ss_dssp             CCCSSSC-CSSSEEECSSSCCEEEHHHHHH---H-EETTTTEEBCSS--SCCBCEECTTCS
T ss_pred             hhHHHHc-CCCCCccCCCCCchhccHHHhH---h-hcCCCCCEECCC--CCCccccCcccc
Confidence            4566666 6677888888888888777775   4 788888888876  888887665443

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=3e-11  Score=70.66  Aligned_cols=42  Identities=24%  Similarity=0.377  Sum_probs=31.8

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCC
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  247 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  247 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|+
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2en7_A            3 SGSSG-TGMKPYVCNECGKAFRSKSYLIIHTR-THTGESGPSSG   44 (44)
T ss_dssp             SCCCS-SSSSSSCCTTTCCCCSSHHHHHHHHT-TTCCSSSSCCC
T ss_pred             CCcCC-CCCcCeECCCCCCccCCHHHHHHHhh-hcCCCCCCCCC
Confidence            55666 56677888888888888888888876 78888888773

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=4.6e-11  Score=69.86  Aligned_cols=39  Identities=18%  Similarity=0.227  Sum_probs=29.5

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCP  278 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  278 (292)
                      +|.+++||.|.+  |++.|.+...|..|++ .|.+++||.|+
T Consensus         6 ~h~~~~~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (44)
T 2eou_A            6 SGAAKTTSECQE--CGKIFRHSSLLIEHQA-LHAGESGPSSG   44 (44)
T ss_dssp             SCSSSCCCCCTT--TCCCCSSHHHHHHHHH-HHTTSCCCCCC
T ss_pred             CCCCCcCeECCC--CCcccCCHHHHHHHHH-HHCCCCCCCCC
Confidence            677777777766  7777777777777777 57777777774

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.04  E-value=1.7e-10  Score=72.54  Aligned_cols=43  Identities=16%  Similarity=0.233  Sum_probs=29.3

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      .+++++||+|.+++|+++|.+.+.|.+|+++.|++++||.|..
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            3567777777544577777777777777643677777777753

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=3.8e-11  Score=70.19  Aligned_cols=42  Identities=24%  Similarity=0.315  Sum_probs=31.9

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCC
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  247 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  247 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||+|+
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGSSG-TGENPYECCECGKVFSRKDQLVSHQK-THSGQSGPSSG   44 (44)
T ss_dssp             SCCSS-SSCCSCEETTTTEECSSHHHHHHHHT-TSSSSCSCCCC
T ss_pred             Ccccc-CCCcCeeCCCCCCccCCHHHHHHHHH-HcCCCCCCCCC
Confidence            55666 56678888888888888888888877 78888888773

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.04  E-value=5.4e-11  Score=68.76  Aligned_cols=41  Identities=17%  Similarity=0.265  Sum_probs=30.9

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccC
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  246 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C  246 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|++++||+|
T Consensus         2 H~~~H-~~~~~~~C~~C~k~f~~~~~l~~H~~-~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSS-GGETPYLCGQCGKSFTQRGSLAVHQR-SCSQSGPSSG   42 (42)
T ss_dssp             CCSCC-CSSCCEECSSSCCEESSHHHHHHHHH-HTTCCCCCCC
T ss_pred             CCccC-CCCCCeECCCCCcccCCHHHHHHHhh-hcCCCCCCCC
Confidence            34455 56677888888888888888888877 7888888876

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=3.2e-11  Score=71.28  Aligned_cols=42  Identities=21%  Similarity=0.404  Sum_probs=33.2

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCC
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  247 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  247 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|+
T Consensus         3 h~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2emz_A            3 SGSSG-SGERPFKCNECGKGFGRRSHLAGHLR-LHSREKSSGPS   44 (46)
T ss_dssp             CCSCS-SCCCSCCCSSSCCCCSSHHHHHHHHH-HHHHTTCCCSC
T ss_pred             CCcCC-CCCCCeECCCCCcccCCHHHHHHHHH-HhCCCCCCCCC
Confidence            55666 66778888888888888888888877 78888888885

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=1.7e-10  Score=67.06  Aligned_cols=39  Identities=26%  Similarity=0.409  Sum_probs=30.5

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCP  278 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  278 (292)
                      +|++++||.|..  |++.|.+...|..|++ .|++++||.|+
T Consensus         4 ~h~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C~   42 (43)
T 2yrm_A            4 GSSGNGAFFCNE--CDCRFSEEASLKRHTL-QTHSDKSGPSS   42 (43)
T ss_dssp             CCSSSCCBCCSS--SCCCBSSHHHHHHHHH-HHTCTTCSSSC
T ss_pred             CcCCCCCEECCC--CCCeeCChHHHHHHHH-hhCCCCCccCC
Confidence            577778888866  8888888888888887 67888888876

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.04  E-value=1.8e-10  Score=67.66  Aligned_cols=40  Identities=20%  Similarity=0.359  Sum_probs=30.7

Q ss_pred             CCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCcc
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCK  252 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~  252 (292)
                      .++++|.|.+|++.|.....|..|++ +|.++++|.|++  ||
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~~~~~C~~--cg   45 (45)
T 2epq_A            6 SGEKPYSCPVCGLRFKRKDRMSYHVR-SHDGSVGKSGPS--SG   45 (45)
T ss_dssp             SSCCSSEETTTTEECSCHHHHHHHHH-HHSCCCCCCCCC--CC
T ss_pred             CCCCCCcCCCCCcccCCHHHHHHHHH-HccCCCCCCCcC--CC
Confidence            56677888888888888888888877 677777888866  75

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.03  E-value=1.1e-10  Score=69.58  Aligned_cols=41  Identities=22%  Similarity=0.386  Sum_probs=30.0

Q ss_pred             CCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccc
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKL  253 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~  253 (292)
                      .++++|.|.+|++.|.....|..|++ +|.+++||.|.+  |++
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~--C~k   48 (48)
T 2epr_A            8 RTRKQVACEICGKIFRDVYHLNRHKL-SHSGEKPYSSGP--SSG   48 (48)
T ss_dssp             CCCCSEEETTTTEEESSHHHHHHHGG-GSCSCCCCCSCC--CCC
T ss_pred             CCCcCeeCCCCCcccCCHHHHHHHHH-hcCCCCCccCCC--CCC
Confidence            45567777777777777777777776 677777777766  764

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.3e-11  Score=70.33  Aligned_cols=41  Identities=22%  Similarity=0.344  Sum_probs=30.8

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccC
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  246 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C  246 (292)
                      |+++| .+++||.|++|++.|.....|..|++ +|.+++||.|
T Consensus         2 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSS-GGEKPYRCDQCGKAFSQKGSLIVHIR-VHTGSGPSSG   42 (42)
T ss_dssp             CCCCC-CSCCSBCCTTTTCCBSSHHHHHTTGG-GTSCCSCCCC
T ss_pred             Ccccc-CCCCCeeCCCccchhCCHHHHHHHHH-HhCCCCCCCC
Confidence            45566 56677888888888888888888877 7777787776

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=1.9e-10  Score=67.84  Aligned_cols=40  Identities=15%  Similarity=0.280  Sum_probs=31.7

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      +|.+++||.|.+  |++.|.+...|..|++ .|.+++||.|++
T Consensus         6 ~h~~~k~~~C~~--C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eom_A            6 SGHGERGHRCSD--CGKFFLQASNFIQHRR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCCSS--SCCCCSSHHHHHHHHH-HHSSCCCSSCCC
T ss_pred             CCCCCCCcCCCC--CCCeeCChHHHHHHHH-HhCCCCCCCCCC
Confidence            677788888866  8888888888888887 688888888864

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=4.5e-11  Score=69.12  Aligned_cols=41  Identities=17%  Similarity=0.374  Sum_probs=30.8

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccC
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  246 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C  246 (292)
                      |+++| .+++||.|.+|++.|.....|..|++ +|.+++||+|
T Consensus         2 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSS-GGEKPYPCEICGTRFRHLQTLKSHLR-IHTGSGPSSG   42 (42)
T ss_dssp             CCSCC-SSSCCBCCSSSCCCBSSHHHHHHHTT-TTSCCSSTTC
T ss_pred             CCccc-CCCCCEECCCCCCccCCHHHHHHHHH-hcCCCCCCCC
Confidence            34555 56678888888888888888888877 7888888776

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=4.3e-11  Score=70.67  Aligned_cols=42  Identities=26%  Similarity=0.422  Sum_probs=33.8

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCC
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  247 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  247 (292)
                      |+++| .++++|.|+.|++.|.....|..|++ +|.+++||.|+
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2eq3_A            3 SGSSG-TGEKPYECNQCGKAFSVRSSLTTHQA-IHTGKKPSGPS   44 (46)
T ss_dssp             CCCSS-CCCCSSEETTTTEECSSHHHHHHHHT-TSCCCCCCCSC
T ss_pred             cccCC-CCCCCeECCCCChhhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            56666 66788888888888888888888877 78888888885

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=4.1e-11  Score=70.05  Aligned_cols=41  Identities=17%  Similarity=0.298  Sum_probs=29.4

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccC
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  246 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C  246 (292)
                      |+++| .++++|.|..|++.|.....|..|++ +|.+++||+|
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C   43 (44)
T 2emb_A            3 SGSSG-HTRKRYECSKCQATFNLRKHLIQHQK-THAAKSGPSS   43 (44)
T ss_dssp             CCSCC-CCCSSEECTTTCCEESCHHHHHHHGG-GGCCCCCTTC
T ss_pred             ccccc-CCCCCeECCCCCCccCCHHHHHHHHH-HcCCCCCcCC
Confidence            55556 55677777777777777777777776 6777777776

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=3e-11  Score=71.38  Aligned_cols=42  Identities=21%  Similarity=0.263  Sum_probs=30.1

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCP  278 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  278 (292)
                      |++ +|++++||.|.+  |++.|.+...|..|++ .|.+++||.|+
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~-~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGS-SGTGEKPFQCKE--CGMNFSWSCSLFKHLR-SHERTDPSGPS   44 (46)
T ss_dssp             CCC-CSCCCCSEECSS--SCCEESSSHHHHHHHH-HHHHSCCSSCS
T ss_pred             ccc-ccCCCCCeeCcc--cChhhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            444 677777777766  7777777777777776 57777777775

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=2.1e-10  Score=65.84  Aligned_cols=38  Identities=18%  Similarity=0.315  Sum_probs=33.1

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPC  277 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  277 (292)
                      +|++++||+|++  |++.|.+...|..|++ .|.+++||.|
T Consensus         4 ~h~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQE--CGKSFRQKGSLTLHER-IHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSS--SCCEESSHHHHHHHGG-GCCCCSCSCC
T ss_pred             ccCCCCCeECCC--CCCCcCCHHHHHHHHH-HhCCCCCcCC
Confidence            688888999977  9999999999999988 6888888887

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=5.4e-11  Score=70.29  Aligned_cols=42  Identities=19%  Similarity=0.343  Sum_probs=32.5

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCC-CCcccCC
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHES-TKNFKCT  247 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~-~~~~~C~  247 (292)
                      |+++| .+++||.|.+|++.|.....|..|++ +|.+ ++||.|+
T Consensus         3 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~~C~   45 (46)
T 2eoy_A            3 SGSSG-QKEKCFKCNKCEKTFSCSKYLTQHER-IHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCC-CCSCCEECSSSCCEESSSHHHHHHHT-TCCSCCTTSSSC
T ss_pred             Ccccc-CCCCCEECcCCCCcCCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            55566 56678888888888888888888877 7888 8888875

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=4.1e-11  Score=69.31  Aligned_cols=41  Identities=20%  Similarity=0.367  Sum_probs=29.7

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccC
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  246 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C  246 (292)
                      |+++| .+++||.|..|++.|.....|..|++ +|.+++||.|
T Consensus         2 H~~~H-~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSS-GGEKPYKCETCGARFVQVAHLRAHVL-IHTGSGPSSG   42 (42)
T ss_dssp             CCCCC-CSSCSEECTTTCCEESSHHHHHHHTH-HHHSCCSSCC
T ss_pred             CCccc-CCCCCEeCCCcChhhCCHHHHHHHHH-HcCCCCCCCC
Confidence            34455 56677777777777777777777776 7777777776

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=4.2e-11  Score=70.02  Aligned_cols=41  Identities=22%  Similarity=0.307  Sum_probs=30.6

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPC  277 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  277 (292)
                      |++ +|.+++||.|.+  |++.|.+...|..|++ .|.+++||.|
T Consensus         3 H~~-~H~~~~~~~C~~--C~k~F~~~~~L~~H~~-~H~~~~~~~C   43 (44)
T 2eox_A            3 SGS-SGTDSKSYNCNE--CGKAFTRIFHLTRHQK-IHTRKSGPSS   43 (44)
T ss_dssp             CCC-CCCCCCCEEETT--TTEEESSSHHHHTTHH-HHCCCCCCSC
T ss_pred             CCc-CCCCCCCeECcc--cCcccCCHHHHHHHHH-HhCCCCCCCC
Confidence            445 677777777766  7777777777777777 5777777777

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=7.1e-11  Score=69.75  Aligned_cols=38  Identities=24%  Similarity=0.382  Sum_probs=28.0

Q ss_pred             CCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      .++++|.|.+|++.|.....|..|++ +|.+++||.|.+
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ep0_A            8 TGEKPYKCDVCHKSFRYGSSLTVHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             TTCCSEECSSSCCEESSHHHHHHHHT-TTSSSCCCSCCC
T ss_pred             CCCCCeeCcccCcccCChHHHHHHHH-HhCCCCCCCCCC
Confidence            55677777777777777777777766 677777777765

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.8e-10  Score=67.63  Aligned_cols=39  Identities=28%  Similarity=0.461  Sum_probs=32.4

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCP  278 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  278 (292)
                      +|.+++||+|.+  |++.|.+...|..|++ .|.+++||.|+
T Consensus         6 ~h~~~k~~~C~~--C~k~F~~~~~L~~H~~-~H~~~k~~~C~   44 (45)
T 2epu_A            6 SGTGQKPFECTH--CGKSFRAKGNLVTHQR-IHTGEKSGPSS   44 (45)
T ss_dssp             CCCSCCSEEETT--TTEEESSHHHHHHHHT-TTSSCCCCCSC
T ss_pred             CCCCCcCccCCC--CCCccCChHHHHHHHH-HhCCCCCCCCC
Confidence            678888888877  8888888888888887 68888888886

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=1e-10  Score=68.36  Aligned_cols=42  Identities=21%  Similarity=0.338  Sum_probs=30.9

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCC
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  247 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  247 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||+|+
T Consensus         3 h~~~h-~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSG-AAKTTSECQECGKIFRHSSLLIEHQA-LHAGESGPSSG   44 (44)
T ss_dssp             CSCSC-SSSCCCCCTTTCCCCSSHHHHHHHHH-HHTTSCCCCCC
T ss_pred             CCCCC-CCCcCeECCCCCcccCCHHHHHHHHH-HHCCCCCCCCC
Confidence            34455 55677888888888888888888877 77778888773

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=4.1e-11  Score=70.82  Aligned_cols=43  Identities=30%  Similarity=0.505  Sum_probs=33.5

Q ss_pred             HHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCC
Q psy11068        203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  247 (292)
Q Consensus       203 ~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  247 (292)
                      +|+++| .+++||.|.+|++.|.....|..|++ +|.+++||+|+
T Consensus         2 ~H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSG-TGEKPFQCKECGMNFSWSCSLFKHLR-SHERTDPSGPS   44 (46)
T ss_dssp             CCCCCS-CCCCSEECSSSCCEESSSHHHHHHHH-HHHHSCCSSCS
T ss_pred             cccccc-CCCCCeeCcccChhhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            356666 56778888888888888888888877 78888888875

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=7.6e-11  Score=69.63  Aligned_cols=42  Identities=24%  Similarity=0.342  Sum_probs=33.7

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCC
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  247 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  247 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|+
T Consensus         3 h~~~h-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2enh_A            3 SGSSG-TGEKPYECDVCRKAFSHHASLTQHQR-VHSGEKPSGPS   44 (46)
T ss_dssp             CCCCC-CCSSSCBCTTTCCBCSSSHHHHHHGG-GSCCSCCCCCC
T ss_pred             CCCCc-CCCCCcCCCCcCchhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            44556 66788888888888888888888877 78888888885

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.1e-10  Score=68.23  Aligned_cols=41  Identities=22%  Similarity=0.280  Sum_probs=32.3

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPC  277 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  277 (292)
                      |++ +|++++||+|.+  |++.|.+...|..|++ .|.+++||.|
T Consensus         3 H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~-~H~~~k~~~~   43 (44)
T 2epv_A            3 SGS-SGSGEKPYECNE--CGKAFIWKSLLIVHER-THAGVSGPSS   43 (44)
T ss_dssp             CCC-CCCCCCSEECSS--SCCEESSHHHHHHHHG-GGSSCSCCCC
T ss_pred             CCc-ccCCCcCeECCC--CCcccCchHHHHHHHh-HhcCCCCCCC
Confidence            445 678888888866  8888888888888887 6888888876

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=8.3e-11  Score=69.46  Aligned_cols=38  Identities=26%  Similarity=0.470  Sum_probs=27.9

Q ss_pred             CCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      .++++|.|.+|++.|.....|..|++ +|.+++||.|++
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytt_A            8 EGEKPYQCSECGKSFSGSYRLTQHWI-THTREKPSGPSS   45 (46)
T ss_dssp             SCCCTTCCSSSCCCCSSHHHHHHHHT-HHHHCCCCSCCC
T ss_pred             CCCCCeeCCCCCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            55677777777777777777777776 677777777765

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3.1e-10  Score=67.56  Aligned_cols=42  Identities=29%  Similarity=0.498  Sum_probs=33.7

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      +|++++||+|.++.|++.|.+...|..|++ .|.+++||.|.+
T Consensus         6 ~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   47 (48)
T 2ent_A            6 SGTGEKPFACTWPGCGWRFSRSDELSRHRR-SHSGVKPSGPSS   47 (48)
T ss_dssp             SSCCCCCEECCSSSCCCEESSHHHHHHHHT-TSCCCCSCSSCC
T ss_pred             CcCCCCCeECCCCCCCCccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            688888888861138888888888888888 688888888876

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=4.9e-11  Score=69.73  Aligned_cols=41  Identities=24%  Similarity=0.434  Sum_probs=31.5

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccC
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  246 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C  246 (292)
                      |+++| .+++||.|.+|++.|.....|..|++ +|.+++||.|
T Consensus         3 H~~~H-~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C   43 (44)
T 2eox_A            3 SGSSG-TDSKSYNCNECGKAFTRIFHLTRHQK-IHTRKSGPSS   43 (44)
T ss_dssp             CCCCC-CCCCCEEETTTTEEESSSHHHHTTHH-HHCCCCCCSC
T ss_pred             CCcCC-CCCCCeECcccCcccCCHHHHHHHHH-HhCCCCCCCC
Confidence            55566 56678888888888888888888877 7888888877

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=3.4e-10  Score=66.78  Aligned_cols=41  Identities=20%  Similarity=0.331  Sum_probs=32.0

Q ss_pred             HHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        206 RVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       206 ~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      ++| .++++|.|.+|++.|.....|..|++ +|.+++||+|.+
T Consensus         5 ~~h-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eom_A            5 SSG-HGERGHRCSDCGKFFLQASNFIQHRR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCCSSCCCSSSCCCCSSHHHHHHHHH-HHSSCCCSSCCC
T ss_pred             CCC-CCCCCcCCCCCCCeeCChHHHHHHHH-HhCCCCCCCCCC
Confidence            344 56678888888888888888888877 788888888863

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=8.2e-10  Score=64.05  Aligned_cols=37  Identities=19%  Similarity=0.349  Sum_probs=29.0

Q ss_pred             CCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCC
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  247 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  247 (292)
                      .++++|.|..|++.|.....|..|++ +|++++||.|+
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   42 (43)
T 2yrm_A            6 SGNGAFFCNECDCRFSEEASLKRHTL-QTHSDKSGPSS   42 (43)
T ss_dssp             SSSCCBCCSSSCCCBSSHHHHHHHHH-HHTCTTCSSSC
T ss_pred             CCCCCEECCCCCCeeCChHHHHHHHH-hhCCCCCccCC
Confidence            56677888888888888888888877 78888888875

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.1e-10  Score=66.99  Aligned_cols=41  Identities=20%  Similarity=0.306  Sum_probs=29.9

Q ss_pred             HHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccC
Q psy11068        204 HQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  246 (292)
Q Consensus       204 H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C  246 (292)
                      |+++| .++++|.|.+|++.|.....|..|++ +|.+++||.|
T Consensus         3 H~~~H-~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~~   43 (44)
T 2epv_A            3 SGSSG-SGEKPYECNECGKAFIWKSLLIVHER-THAGVSGPSS   43 (44)
T ss_dssp             CCCCC-CCCCSEECSSSCCEESSHHHHHHHHG-GGSSCSCCCC
T ss_pred             CCccc-CCCcCeECCCCCcccCchHHHHHHHh-HhcCCCCCCC
Confidence            45566 56677777777777777777777776 6777777766

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=4.4e-10  Score=66.85  Aligned_cols=38  Identities=26%  Similarity=0.471  Sum_probs=26.3

Q ss_pred             CCCCCcccC--CCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        210 TNPEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       210 ~~~~~~~C~--~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      .++++|.|.  .|++.|.....|..|++ +|.+++||+|.+
T Consensus         8 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   47 (48)
T 2ent_A            8 TGEKPFACTWPGCGWRFSRSDELSRHRR-SHSGVKPSGPSS   47 (48)
T ss_dssp             CCCCCEECCSSSCCCEESSHHHHHHHHT-TSCCCCSCSSCC
T ss_pred             CCCCCeECCCCCCCCccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            556677776  67777777777777766 677777777754

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=1e-09  Score=62.88  Aligned_cols=36  Identities=22%  Similarity=0.442  Sum_probs=28.3

Q ss_pred             CCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccC
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  246 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C  246 (292)
                      .++++|.|++|++.|.....|..|++ +|.+++||.|
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C   41 (41)
T 2ept_A            6 SGQRVYECQECGKSFRQKGSLTLHER-IHTGSGPSSG   41 (41)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHGG-GCCCCSCSCC
T ss_pred             CCCCCeECCCCCCCcCCHHHHHHHHH-HhCCCCCcCC
Confidence            56677888888888888888888877 7888888776

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1.1e-09  Score=64.16  Aligned_cols=37  Identities=27%  Similarity=0.547  Sum_probs=28.5

Q ss_pred             CCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCC
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT  247 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  247 (292)
                      .++++|.|.+|++.|.....|..|++ +|.+++||.|+
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~   44 (45)
T 2epu_A            8 TGQKPFECTHCGKSFRAKGNLVTHQR-IHTGEKSGPSS   44 (45)
T ss_dssp             CSCCSEEETTTTEEESSHHHHHHHHT-TTSSCCCCCSC
T ss_pred             CCCcCccCCCCCCccCChHHHHHHHH-HhCCCCCCCCC
Confidence            56677888888888888888888876 77777888775

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.85  E-value=2.1e-09  Score=60.75  Aligned_cols=37  Identities=24%  Similarity=0.404  Sum_probs=26.6

Q ss_pred             cCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCC
Q psy11068        238 HESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPC  277 (292)
Q Consensus       238 H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C  277 (292)
                      |++++||.|.+  |++.|.+...|..|++ .|.+++||.+
T Consensus         1 h~~~k~~~C~~--C~k~f~~~~~L~~H~~-~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSF--CKREFRSAQALGGHMN-VHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTT--TCCEESSHHHHHHHHH-TTCCSCTTTT
T ss_pred             CCCCCceECCC--CCcccCCHHHHHHHHH-HcCCCcccee
Confidence            45677777766  7777777777777777 5777777765

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.83  E-value=3.4e-09  Score=66.61  Aligned_cols=38  Identities=26%  Similarity=0.340  Sum_probs=31.9

Q ss_pred             CCCCCcccCC--CcccccChhHHHHHHHHhcCCCCcccCC
Q psy11068        210 TNPEDLVCKG--CGKQFKVPCRLREHYKAVHESTKNFKCT  247 (292)
Q Consensus       210 ~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~~~~~C~  247 (292)
                      .+++||+|..  |+++|...+.|..|++++|++++||.|.
T Consensus        23 sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           23 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             cCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccc
Confidence            6778999965  9999999999999975589999998885

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.80  E-value=1.1e-10  Score=79.21  Aligned_cols=57  Identities=14%  Similarity=0.250  Sum_probs=43.0

Q ss_pred             HHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCC
Q psy11068        206 RVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLN  271 (292)
Q Consensus       206 ~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~  271 (292)
                      ++| .++++|.|.+|++.|.....|..|++ +|++++||+|..  |.    ....|..|.+ .|.+
T Consensus        18 ~~H-~~~kpy~C~~C~k~F~~~~~L~~H~~-~Ht~ekp~~C~~--~~----~~~~~~~~~~-~~~~   74 (88)
T 1x6f_A           18 GPR-LQNSTYQCKHCDSKLQSTAELTSHLN-IHNEEFQKRAKR--QE----RRKQLLSKQK-YADG   74 (88)
T ss_dssp             CSC-CCCSCEECSSSCCEESSHHHHHHHHH-HHHHHHHHHCCC--CS----CCCCCCCCCC-CCCC
T ss_pred             ccc-CCCCCCcCCCCCCEeCCHHHHHHHHH-HhCCCCCcccch--hh----hHHHHHhhhc-cccc
Confidence            345 66788888888888888888888887 788888888855  44    4556667777 5655

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=1.6e-10  Score=75.87  Aligned_cols=64  Identities=19%  Similarity=0.228  Sum_probs=40.2

Q ss_pred             HHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        201 LKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       201 l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      |..|++++ .+.+++.|..|++.|. ...|..|+  .|.+++||.|+.  |++.|. ...|..|++ .|+++
T Consensus         5 L~~H~~~~-c~~r~~~C~~C~~~~~-~~~L~~H~--~~c~~~~~~C~~--C~~~~~-~~~l~~H~~-~c~~~   68 (75)
T 2d9k_A            5 SSGHEETE-CPLRLAVCQHCDLELS-ILKLKEHE--DYCGARTELCGN--CGRNVL-VKDLKTHPE-VCGRE   68 (75)
T ss_dssp             CSCCCCCC-CCCCCEECSSSCCEEC-HHHHHHHH--HHHHHCEEECSS--SCCEEE-TTGGGTHHH-HBTTB
T ss_pred             HHhhCccc-CCCcccCCcccChHhh-HHHHHHHH--hHcCCCceEccc--CCCcCc-HHHHHHHHH-HccCC
Confidence            44555555 4556677777777663 66667774  466667777755  776665 366677766 46554

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.74  E-value=6.5e-09  Score=58.70  Aligned_cols=36  Identities=22%  Similarity=0.414  Sum_probs=28.5

Q ss_pred             CCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccC
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  246 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C  246 (292)
                      .++++|.|.+|++.|.....|..|++ +|.+++||.+
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~~   37 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMN-VHRRDRARLR   37 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHH-TTCCSCTTTT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHH-HcCCCcccee
Confidence            45678888888888888888888877 7888888765

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=1.1e-09  Score=71.97  Aligned_cols=66  Identities=20%  Similarity=0.322  Sum_probs=49.0

Q ss_pred             HHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCC
Q psy11068        169 QYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK  242 (292)
Q Consensus       169 ~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~  242 (292)
                      .|..|++.+.+ .+|+.|.+  |++.|. ...|..|+ .| .+++||.|+.|++.|. ...|..|++ +|.++.
T Consensus         4 ~L~~H~~~~c~-~r~~~C~~--C~~~~~-~~~L~~H~-~~-c~~~~~~C~~C~~~~~-~~~l~~H~~-~c~~~~   69 (75)
T 2d9k_A            4 GSSGHEETECP-LRLAVCQH--CDLELS-ILKLKEHE-DY-CGARTELCGNCGRNVL-VKDLKTHPE-VCGREG   69 (75)
T ss_dssp             CCSCCCCCCCC-CCCEECSS--SCCEEC-HHHHHHHH-HH-HHHCEEECSSSCCEEE-TTGGGTHHH-HBTTBS
T ss_pred             HHHhhCcccCC-CcccCCcc--cChHhh-HHHHHHHH-hH-cCCCceEcccCCCcCc-HHHHHHHHH-HccCCc
Confidence            35567666765 78888877  888884 77888888 66 5667888888888776 478888877 676653

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=9.4e-09  Score=57.52  Aligned_cols=34  Identities=32%  Similarity=0.458  Sum_probs=23.0

Q ss_pred             cCCCCcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        238 HESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       238 H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      |++++||+|+.++|+++|.+++.|.+|++ .|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r-~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLK-VHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHH-HHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHH-hcCCC
Confidence            56677777753347777777777777777 57664

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.71  E-value=9.5e-09  Score=56.35  Aligned_cols=34  Identities=15%  Similarity=0.355  Sum_probs=25.2

Q ss_pred             cCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCc
Q psy11068        238 HESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRM  274 (292)
Q Consensus       238 H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~  274 (292)
                      |.+++||.|.+  |++.|.+...|..|++ .|.+++|
T Consensus         2 h~~~k~~~C~~--C~k~f~~~~~L~~H~~-~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCAL--CLKKFVSSIRLRSHIR-EVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSS--SCCEESSHHHHHHHHH-HTSCTTC
T ss_pred             CCCCCCeECCC--CcchhCCHHHHHHHHH-HHcCCCC
Confidence            66777777766  7777777777777777 5777654

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.69  E-value=1.2e-08  Score=56.02  Aligned_cols=35  Identities=29%  Similarity=0.439  Sum_probs=27.3

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCc
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRM  274 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~  274 (292)
                      +|++++||.|.+  |++.|.+...|..|++ .|.+++|
T Consensus         1 ~H~~~k~~~C~~--C~k~f~~~~~l~~H~~-~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRI--CLSAFTTKANCARHLK-VHTDTLS   35 (35)
T ss_dssp             CCSCCSCEECSS--SCCEESSHHHHHHHHG-GGTSCCC
T ss_pred             CCCCCcCeeCCC--CCcccCCHHHHHHHHH-HcCCCCC
Confidence            367788888876  8888888888888887 6777764

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=1.2e-08  Score=56.79  Aligned_cols=35  Identities=23%  Similarity=0.384  Sum_probs=26.4

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCc
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRM  274 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~  274 (292)
                      +|++++||.|.+  |++.|.+...|..|++ .|.+++|
T Consensus         3 ~h~~~k~~~C~~--C~k~f~~~~~l~~H~~-~h~~~kp   37 (37)
T 2elo_A            3 SGSSGRSYSCPV--CEKSFSEDRLIKSHIK-TNHPEVS   37 (37)
T ss_dssp             CCCCCCCCEETT--TTEECSSHHHHHHHHH-HHCSSCC
T ss_pred             CCCCCCCcCCCC--CCCccCCHHHHHHHHH-HHcCCCC
Confidence            577777888866  8888888888888877 5777664

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.65  E-value=1.4e-08  Score=56.92  Aligned_cols=37  Identities=32%  Similarity=0.512  Sum_probs=24.2

Q ss_pred             cCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcC
Q psy11068        238 HESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMF  275 (292)
Q Consensus       238 H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~  275 (292)
                      |++++||.|.+++|++.|.+...|.+|++ .|++++||
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKH-KHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHH-HHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHH-HhCCCCCC
Confidence            45667777752237777777777777776 57776665

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.65  E-value=2.1e-08  Score=54.30  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=18.0

Q ss_pred             cccCCcCCccccccCHHHHHhHhhhhcCCCCcCC
Q psy11068        243 NFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFP  276 (292)
Q Consensus       243 ~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~  276 (292)
                      ||.|..  |++.|.+...|..|++ .|++++||.
T Consensus         2 p~~C~~--C~k~F~~~~~L~~H~~-~H~~~~~~~   32 (33)
T 1rim_A            2 KFACPE--CPKRFMRSDHLSKHIT-LHELLGEER   32 (33)
T ss_dssp             CCCCSS--SCCCCSSHHHHHHHHH-HHTTTCCCC
T ss_pred             cccCCC--CCchhCCHHHHHHHHH-HhCCCCCCC
Confidence            555644  6666666666666655 466655554

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.65  E-value=8.4e-09  Score=57.41  Aligned_cols=36  Identities=28%  Similarity=0.500  Sum_probs=26.9

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      |++ +|++++||+|+.  |++.|.+...|..|++ .|.++
T Consensus         2 H~~-~h~~~k~~~C~~--C~k~f~~~~~l~~H~~-~H~~~   37 (37)
T 1p7a_A            2 STR-GSTGIKPFQCPD--CDRSFSRSDHLALHRK-RHMLV   37 (37)
T ss_dssp             CSS-TTCCSSSBCCTT--TCCCBSSHHHHHHHHG-GGTCC
T ss_pred             CCC-cCCCCCCccCCC--CCcccCcHHHHHHHHH-HhccC
Confidence            444 677888888866  8888888888888887 57653

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.64  E-value=2e-08  Score=54.36  Aligned_cols=33  Identities=24%  Similarity=0.413  Sum_probs=30.5

Q ss_pred             CCcccCCCcccccChhHHHHHHHHhcCCCCcccC
Q psy11068        213 EDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC  246 (292)
Q Consensus       213 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C  246 (292)
                      +||.|.+|++.|.....|..|++ +|++++||.+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~r   33 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHIT-LHELLGEERR   33 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHH-HHTTTCCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHH-HhCCCCCCCC
Confidence            58999999999999999999998 8999999863

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.60  E-value=2.3e-08  Score=55.56  Aligned_cols=36  Identities=22%  Similarity=0.289  Sum_probs=30.4

Q ss_pred             HHhhccCCCccccccCCCCcccccccccchHHHHHhHhhcCCC
Q psy11068         77 HLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDED  119 (292)
Q Consensus        77 H~~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~  119 (292)
                      |+++|.+++||.|++       |++.|.....|..|+++|.++
T Consensus         2 H~~~h~~~k~~~C~~-------C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPD-------CDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTT-------TCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCC-------CCcccCcHHHHHHHHHHhccC
Confidence            677888888899988       899999989999998888753

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=1.6e-08  Score=56.28  Aligned_cols=33  Identities=18%  Similarity=0.383  Sum_probs=22.9

Q ss_pred             CCCCCcccCCCcccccChhHHHHHHHHhcCCCCc
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKN  243 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~  243 (292)
                      .++++|.|.+|++.|.....|..|++ +|.+++|
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~-~h~~~kp   37 (37)
T 2elo_A            5 SSGRSYSCPVCEKSFSEDRLIKSHIK-TNHPEVS   37 (37)
T ss_dssp             CCCCCCEETTTTEECSSHHHHHHHHH-HHCSSCC
T ss_pred             CCCCCcCCCCCCCccCCHHHHHHHHH-HHcCCCC
Confidence            55667777777777777777777766 6766654

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.55  E-value=6e-08  Score=53.00  Aligned_cols=33  Identities=27%  Similarity=0.481  Sum_probs=22.7

Q ss_pred             CCCCCcccCCCcccccChhHHHHHHHHhcCCCCc
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKN  243 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~  243 (292)
                      .++++|.|..|++.|.....|..|++ +|.+++|
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~kp   35 (35)
T 2elx_A            3 SGSSGYVCALCLKKFVSSIRLRSHIR-EVHGAAQ   35 (35)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHH-HTSCTTC
T ss_pred             CCCCCeECCCCcchhCCHHHHHHHHH-HHcCCCC
Confidence            45567777777777777777777766 6766653

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.51  E-value=6.9e-08  Score=52.81  Aligned_cols=33  Identities=27%  Similarity=0.496  Sum_probs=20.9

Q ss_pred             CCCCCcccCCCcccccChhHHHHHHHHhcCCCCc
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKN  243 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~  243 (292)
                      .++++|.|.+|++.|.....|..|++ +|.+++|
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~~~   35 (35)
T 1srk_A            3 SGKRPFVCRICLSAFTTKANCARHLK-VHTDTLS   35 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHG-GGTSCCC
T ss_pred             CCCcCeeCCCCCcccCCHHHHHHHHH-HcCCCCC
Confidence            45566666666666666666666665 5665543

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=6.7e-08  Score=53.21  Aligned_cols=33  Identities=30%  Similarity=0.469  Sum_probs=24.4

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      +|.+++||.|.+  |++.|.....|..|++ .|.++
T Consensus         3 ~h~~~k~~~C~~--C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKCPQ--CSYASAIKANLNVHLR-KHTGE   35 (36)
T ss_dssp             CSCCCCSEECSS--SSCEESSHHHHHHHHH-HHTCC
T ss_pred             CCCCCCCCCCCC--CCcccCCHHHHHHHHH-HccCC
Confidence            467777777766  7777777777777777 57665

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.49  E-value=6.9e-08  Score=53.66  Aligned_cols=34  Identities=24%  Similarity=0.458  Sum_probs=23.0

Q ss_pred             cCCCCcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        238 HESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       238 H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      |++++||.|.+++|++.|.+.+.|..|++ .|+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLR-WHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHH-HHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHH-hcCCC
Confidence            56677777752237777777777777777 56665

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=8.5e-08  Score=52.81  Aligned_cols=33  Identities=36%  Similarity=0.570  Sum_probs=24.7

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      .|.+++||+|.+  |++.|.+...|..|++ .|+++
T Consensus         3 ~h~~~k~~~C~~--C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2elq_A            3 SGSSGKPFKCSL--CEYATRSKSNLKAHMN-RHSTE   35 (36)
T ss_dssp             SSCCCCSEECSS--SSCEESCHHHHHHHHH-HSSTT
T ss_pred             CCCCCCCccCCC--CCchhCCHHHHHHHHH-HhccC
Confidence            467777888866  8888888888888877 57665

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=8e-08  Score=52.94  Aligned_cols=34  Identities=21%  Similarity=0.281  Sum_probs=26.0

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMR  273 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~  273 (292)
                      .|.+++||+|.+  |++.|.+...|..|++ .|++++
T Consensus         3 ~h~~~k~~~C~~--C~k~f~~~~~l~~H~~-~H~~~k   36 (36)
T 2elv_A            3 SGSSGLLYDCHI--CERKFKNELDRDRHML-VHGDKW   36 (36)
T ss_dssp             CSCCCCCEECSS--SCCEESSHHHHHHHHT-TTSTTC
T ss_pred             CCCCCCCeECCC--CCCccCCHHHHHHHHH-HhcCCC
Confidence            467778888876  8888888888888887 577653

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=9.4e-08  Score=52.58  Aligned_cols=34  Identities=29%  Similarity=0.400  Sum_probs=24.4

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMR  273 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~  273 (292)
                      +|.+++||.|.+  |++.|.+...|..|++ .|++++
T Consensus         3 ~h~~~~~~~C~~--C~k~f~~~~~l~~H~~-~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDM--CGKKFKSKGTLKSHKL-LHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTT--TCCBCSSHHHHHHHHH-HHSSCC
T ss_pred             CCCCCCCeecCc--CCCCcCchHHHHHHHH-HhcCCC
Confidence            466777777766  7777777777777777 576653

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.48  E-value=8e-08  Score=56.90  Aligned_cols=35  Identities=20%  Similarity=0.451  Sum_probs=24.4

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMR  273 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~  273 (292)
                      +|++++||.|.+  |++.|.+...|..|++..|.++.
T Consensus         1 ~Ht~~kp~~C~~--C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            1 GEDRDKPYACDI--CGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             -CTTTSCEECTT--TCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCCcCEECCC--cCcccCCHHHHHHHhhhhcCCCC
Confidence            477788888866  88888888888888773476654

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.47  E-value=5.9e-08  Score=53.39  Aligned_cols=25  Identities=32%  Similarity=0.616  Sum_probs=14.0

Q ss_pred             CCCCcccCCcCCccccccCHHHHHhHh
Q psy11068        239 ESTKNFKCTYDGCKLLFSTKSALKRHN  265 (292)
Q Consensus       239 ~~~~~~~C~~~~C~~~f~~~~~l~~H~  265 (292)
                      .+++||+|..  |+++|.+++.|.+|+
T Consensus         4 ~gekp~~C~~--CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLP--CGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETT--TTEECSCHHHHHHHH
T ss_pred             CCccCeECCC--CCCccCCHhHccCcC
Confidence            4555555544  555555555555554

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=1.2e-07  Score=52.99  Aligned_cols=31  Identities=26%  Similarity=0.384  Sum_probs=19.9

Q ss_pred             CCCCCcccCC--CcccccChhHHHHHHHHhcCCC
Q psy11068        210 TNPEDLVCKG--CGKQFKVPCRLREHYKAVHEST  241 (292)
Q Consensus       210 ~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~  241 (292)
                      .+++||+|++  |+++|..++.|.+|++ +|+++
T Consensus         5 ~gekp~~C~~~~C~k~F~~~~~L~~H~r-~Htg~   37 (38)
T 2eln_A            5 SSGILLKCPTDGCDYSTPDKYKLQAHLK-VHTAL   37 (38)
T ss_dssp             SCCCCEECSSSSCCCEESCHHHHHHHHH-HHSCC
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHH-hcCCC
Confidence            4556666664  6666666666666666 66654

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.47  E-value=9.4e-08  Score=53.35  Aligned_cols=34  Identities=32%  Similarity=0.678  Sum_probs=25.1

Q ss_pred             CCCCCcccC--CCcccccChhHHHHHHHHhcCCCCcc
Q psy11068        210 TNPEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNF  244 (292)
Q Consensus       210 ~~~~~~~C~--~C~~~f~~~~~L~~H~~~~H~~~~~~  244 (292)
                      .++++|.|.  .|++.|.....|..|++ +|++++||
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~k~~   37 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKH-KHEMTLKF   37 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHH-HHHTTTTT
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHH-HhCCCCCC
Confidence            456777777  47777777777777777 67777776

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.46  E-value=3.2e-08  Score=66.88  Aligned_cols=44  Identities=11%  Similarity=0.169  Sum_probs=40.2

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCCccCCcc
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKS  285 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~  285 (292)
                      +|++++||.|.+  |++.|.+...|..|++ .|++++||.|..  |.+.
T Consensus        19 ~H~~~kpy~C~~--C~k~F~~~~~L~~H~~-~Ht~ekp~~C~~--~~~~   62 (88)
T 1x6f_A           19 PRLQNSTYQCKH--CDSKLQSTAELTSHLN-IHNEEFQKRAKR--QERR   62 (88)
T ss_dssp             SCCCCSCEECSS--SCCEESSHHHHHHHHH-HHHHHHHHHCCC--CSCC
T ss_pred             ccCCCCCCcCCC--CCCEeCCHHHHHHHHH-HhCCCCCcccch--hhhH
Confidence            689999999987  9999999999999999 799999999987  6543

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.45  E-value=9.2e-08  Score=52.63  Aligned_cols=25  Identities=32%  Similarity=0.751  Sum_probs=19.0

Q ss_pred             CCCCCcccCCCcccccChhHHHHHH
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHY  234 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~  234 (292)
                      .+++||.|++|+++|..++.|.+|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            4567788888888888887777775

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=7.1e-08  Score=53.51  Aligned_cols=33  Identities=33%  Similarity=0.633  Sum_probs=23.5

Q ss_pred             hcCCCCcccCCcCCccccccCH-HHHHhHhhhhcCCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTK-SALKRHNKSKHLNM  272 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~-~~l~~H~~~~H~~~  272 (292)
                      +|.+++||+|+.  |++.|.+. ..|..|++ .|+++
T Consensus         3 ~h~~~k~~~C~~--C~k~f~~~~~~L~~H~~-~H~~~   36 (37)
T 2elp_A            3 SGSSGRAMKCPY--CDFYFMKNGSDLQRHIW-AHEGV   36 (37)
T ss_dssp             SCCCCCCEECSS--SSCEECSSCHHHHHHHH-HHHTC
T ss_pred             CCCCCCCeECCC--CChhhccCHHHHHHHHH-hcCCC
Confidence            567777777766  77777777 77777776 56655

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.43  E-value=1.4e-07  Score=51.86  Aligned_cols=33  Identities=36%  Similarity=0.623  Sum_probs=23.0

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      .|.+++||.|++  |++.|.....|..|++ .|.++
T Consensus         3 ~~~~~k~~~C~~--C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2els_A            3 SGSSGKIFTCEY--CNKVFKFKHSLQAHLR-IHTNE   35 (36)
T ss_dssp             TTSCCCCEECTT--TCCEESSHHHHHHHHH-HHCCC
T ss_pred             CCCCCCCEECCC--CCceeCCHHHHHHHHH-HhCCC
Confidence            356677777766  7777777777777777 56655

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.42  E-value=9.6e-09  Score=60.69  Aligned_cols=35  Identities=26%  Similarity=0.608  Sum_probs=22.2

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      .|.+++||.|.++.|++.|.+...|..|++ .|+++
T Consensus        12 ~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~-~H~~e   46 (47)
T 1ncs_A           12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQ-THLED   46 (47)
T ss_dssp             EEETTTEEECCCTTCCCEECSSSSHHHHHH-HHTTT
T ss_pred             ccCCCCCeECCCCCCCCccCCHHHHHHHHH-HccCC
Confidence            466677777741137777777777777776 56655

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=1.2e-07  Score=52.57  Aligned_cols=33  Identities=36%  Similarity=0.539  Sum_probs=24.8

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhH-hhhhcCCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRH-NKSKHLNM  272 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H-~~~~H~~~  272 (292)
                      +|++++||+|..  |++.|.++..|..| ++ .|+++
T Consensus         3 ~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-~H~~~   36 (37)
T 2elm_A            3 SGSSGHLYYCSQ--CHYSSITKNCLKRHVIQ-KHSNI   36 (37)
T ss_dssp             SSSSSCEEECSS--SSCEEECHHHHHHHHHH-HTCCC
T ss_pred             ccCCCcCeECCC--CCcccCCHHHHHHHHHH-HccCc
Confidence            577788888866  88888888888888 66 57654

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.40  E-value=2.8e-08  Score=53.36  Aligned_cols=31  Identities=26%  Similarity=0.444  Sum_probs=25.4

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhhhcCCCCcC
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMF  275 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~  275 (292)
                      +||+|..  |++.|.+...|..|++ .|++++||
T Consensus         1 kp~~C~~--C~k~f~~~~~L~~H~~-~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPA--CPKRFMRSDALSKHIK-TAFIVVAL   31 (32)
T ss_dssp             CCSSSSS--SCTTHHHHHTTSSSTT-SSSSSSSC
T ss_pred             CCCCCCC--CCcccCCHHHHHHHHH-HHccCCCC
Confidence            4788876  8888888888888887 68888876

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=2.7e-07  Score=50.64  Aligned_cols=31  Identities=16%  Similarity=0.375  Sum_probs=18.7

Q ss_pred             CCCCCcccCCCcccccChhHHHHHHHHhcCCC
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHYKAVHEST  241 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~  241 (292)
                      .+++||.|..|++.|.....|..|++ +|.++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2elt_A            5 SSGKPYKCPQCSYASAIKANLNVHLR-KHTGE   35 (36)
T ss_dssp             CCCCSEECSSSSCEESSHHHHHHHHH-HHTCC
T ss_pred             CCCCCCCCCCCCcccCCHHHHHHHHH-HccCC
Confidence            44556666666666666666666655 55544

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=3e-07  Score=50.53  Aligned_cols=31  Identities=16%  Similarity=0.382  Sum_probs=19.5

Q ss_pred             CCCCCcccCCCcccccChhHHHHHHHHhcCCC
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHYKAVHEST  241 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~  241 (292)
                      .+++||.|.+|++.|.....|..|++ +|.++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2elq_A            5 SSGKPFKCSLCEYATRSKSNLKAHMN-RHSTE   35 (36)
T ss_dssp             CCCCSEECSSSSCEESCHHHHHHHHH-HSSTT
T ss_pred             CCCCCccCCCCCchhCCHHHHHHHHH-HhccC
Confidence            45566666666666666666666665 56554

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.36  E-value=3.7e-07  Score=50.07  Aligned_cols=31  Identities=29%  Similarity=0.614  Sum_probs=19.9

Q ss_pred             CCCCCcccCCCcccccChhHHHHHHHHhcCCC
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHYKAVHEST  241 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~  241 (292)
                      .++++|.|.+|++.|.....|..|++ +|+++
T Consensus         5 ~~~~~~~C~~C~k~f~~~~~l~~H~~-~H~~e   35 (36)
T 2elr_A            5 SSGKTHLCDMCGKKFKSKGTLKSHKL-LHTAD   35 (36)
T ss_dssp             CCCSSCBCTTTCCBCSSHHHHHHHHH-HHSSC
T ss_pred             CCCCCeecCcCCCCcCchHHHHHHHH-HhcCC
Confidence            44566666666666666666666666 56554

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.34  E-value=1.7e-07  Score=51.96  Aligned_cols=31  Identities=23%  Similarity=0.389  Sum_probs=20.4

Q ss_pred             CCCCCcccCCCcccccCh-hHHHHHHHHhcCCC
Q psy11068        210 TNPEDLVCKGCGKQFKVP-CRLREHYKAVHEST  241 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~-~~L~~H~~~~H~~~  241 (292)
                      .+++||.|..|++.|... ..|..|++ +|+++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~~L~~H~~-~H~~~   36 (37)
T 2elp_A            5 SSGRAMKCPYCDFYFMKNGSDLQRHIW-AHEGV   36 (37)
T ss_dssp             CCCCCEECSSSSCEECSSCHHHHHHHH-HHHTC
T ss_pred             CCCCCeECCCCChhhccCHHHHHHHHH-hcCCC
Confidence            455667777777777776 67777766 56554

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.32  E-value=4.4e-07  Score=49.82  Aligned_cols=31  Identities=26%  Similarity=0.589  Sum_probs=18.9

Q ss_pred             CCCCCcccCCCcccccChhHHHHHHHHhcCCC
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHYKAVHEST  241 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~  241 (292)
                      .++++|.|..|++.|.....|..|++ +|.++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2els_A            5 SSGKIFTCEYCNKVFKFKHSLQAHLR-IHTNE   35 (36)
T ss_dssp             SCCCCEECTTTCCEESSHHHHHHHHH-HHCCC
T ss_pred             CCCCCEECCCCCceeCCHHHHHHHHH-HhCCC
Confidence            44556666666666666666666665 56544

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.31  E-value=2.2e-08  Score=53.75  Aligned_cols=31  Identities=23%  Similarity=0.349  Sum_probs=24.4

Q ss_pred             CCcccCCCcccccChhHHHHHHHHhcCCCCcc
Q psy11068        213 EDLVCKGCGKQFKVPCRLREHYKAVHESTKNF  244 (292)
Q Consensus       213 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~  244 (292)
                      +||.|.+|++.|...+.|..|++ +|++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~-~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIK-TAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTT-SSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHH-HHccCCCC
Confidence            46788888888888888888877 78887776

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.30  E-value=2.2e-07  Score=51.50  Aligned_cols=34  Identities=21%  Similarity=0.386  Sum_probs=27.7

Q ss_pred             hhccCCCccccccCCCCcccccccccchHHHHHh-HhhcCCC
Q psy11068         79 LKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRH-MTSHDED  119 (292)
Q Consensus        79 ~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H-~~~h~~~  119 (292)
                      ++|.+++||.|..       |++.|.....|..| ++.|.+.
T Consensus         2 ~~H~~~k~~~C~~-------C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSSGHLYYCSQ-------CHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSSCEEECSS-------SSCEEECHHHHHHHHHHHTCCC
T ss_pred             CccCCCcCeECCC-------CCcccCCHHHHHHHHHHHccCc
Confidence            4677888888888       88888888888888 7777654

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.26  E-value=4.7e-07  Score=49.69  Aligned_cols=33  Identities=21%  Similarity=0.388  Sum_probs=25.9

Q ss_pred             hccCCCccccccCCCCcccccccccchHHHHHhHhhcCCC
Q psy11068         80 KHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDED  119 (292)
Q Consensus        80 ~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~  119 (292)
                      .|.+++||.|.+       |++.|.....|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~-------C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            3 SGSSGLLYDCHI-------CERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CSCCCCCEECSS-------SCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCeECCC-------CCCccCCHHHHHHHHHHhcCC
Confidence            466778888887       888888888888888887764

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.26  E-value=6.6e-07  Score=47.22  Aligned_cols=30  Identities=30%  Similarity=0.666  Sum_probs=19.4

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      +||.|+++.|++.|.+...|..|++ .|+++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~-~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKR-THTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHT-TTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHH-HhcCC
Confidence            4677751127777777777777776 57665

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.25  E-value=2.2e-06  Score=53.84  Aligned_cols=50  Identities=20%  Similarity=0.449  Sum_probs=31.3

Q ss_pred             CcccccChhHHHHHHHHhcCCCC------cccCCcCCccccccCHHHHHhHhhhhc
Q psy11068        220 CGKQFKVPCRLREHYKAVHESTK------NFKCTYDGCKLLFSTKSALKRHNKSKH  269 (292)
Q Consensus       220 C~~~f~~~~~L~~H~~~~H~~~~------~~~C~~~~C~~~f~~~~~l~~H~~~~H  269 (292)
                      |++.|.+...|..|+...|.+.+      +|.|...+|++.+.....|..|++..|
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            55555555555555543554433      677776667777777777777777544

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.23  E-value=9.5e-07  Score=45.62  Aligned_cols=26  Identities=38%  Similarity=0.786  Sum_probs=12.2

Q ss_pred             cccCCcCCccccccCHHHHHhHhhhhcCC
Q psy11068        243 NFKCTYDGCKLLFSTKSALKRHNKSKHLN  271 (292)
Q Consensus       243 ~~~C~~~~C~~~f~~~~~l~~H~~~~H~~  271 (292)
                      ||.|..  |++.|.+...|..|++ .|.+
T Consensus         2 ~~~C~~--C~~~f~~~~~l~~H~~-~h~~   27 (29)
T 1ard_A            2 SFVCEV--CTRAFARQEHLKRHYR-SHTN   27 (29)
T ss_dssp             CCBCTT--TCCBCSSHHHHHHHHH-HHSC
T ss_pred             CeECCC--CCcccCCHHHHHHHHH-HhcC
Confidence            444443  4444444444444444 3443

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.23  E-value=7.7e-07  Score=46.32  Aligned_cols=28  Identities=32%  Similarity=0.602  Sum_probs=14.7

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      +||.|..  |++.|.+...|..|++ .|.++
T Consensus         2 k~~~C~~--C~~~f~~~~~l~~H~~-~h~~~   29 (30)
T 2m0d_A            2 KPYQCDY--CGRSFSDPTSKMRHLE-THDTD   29 (30)
T ss_dssp             CCEECTT--TCCEESCHHHHHHHHH-TTCCC
T ss_pred             cCccCCC--CCcccCCHHHHHHHHH-HhccC
Confidence            4555544  5555555555555555 35443

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.22  E-value=8.2e-07  Score=47.21  Aligned_cols=30  Identities=30%  Similarity=0.640  Sum_probs=17.1

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      +||.|.+..|++.|.+...|..|++ .|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKK-SHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHG-GGTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHH-HccCC
Confidence            4566651126666666666666666 46554

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.22  E-value=8.9e-07  Score=46.06  Aligned_cols=30  Identities=27%  Similarity=0.599  Sum_probs=27.0

Q ss_pred             CCCcccCCCcccccChhHHHHHHHHhcCCCC
Q psy11068        212 PEDLVCKGCGKQFKVPCRLREHYKAVHESTK  242 (292)
Q Consensus       212 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~  242 (292)
                      ++||.|..|++.|.....|..|++ +|.+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~-~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLE-THDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHH-TTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHH-HhccCC
Confidence            368999999999999999999998 898764

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.20  E-value=2.1e-06  Score=54.25  Aligned_cols=32  Identities=19%  Similarity=0.425  Sum_probs=19.1

Q ss_pred             cCCCCcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        238 HESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       238 H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      |.+++||+|..  |++.|.++..|..|++ .|+++
T Consensus         8 ~~~ekpy~C~~--CgK~F~~~s~L~~H~r-~Htg~   39 (66)
T 2epp_A            8 LREAGILPCGL--CGKVFTDANRLRQHEA-QHGVT   39 (66)
T ss_dssp             CCCCCCCCCTT--TCCCCSCHHHHHHHHH-HHTTT
T ss_pred             CCCccCcCCCC--CCCccCCHHHHHhhhh-hhCCC
Confidence            44556666654  6666666666666666 45554

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.20  E-value=8.6e-07  Score=49.03  Aligned_cols=31  Identities=26%  Similarity=0.580  Sum_probs=18.7

Q ss_pred             CCCCCcccCC--CcccccChhHHHHHHHHhcCCC
Q psy11068        210 TNPEDLVCKG--CGKQFKVPCRLREHYKAVHEST  241 (292)
Q Consensus       210 ~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~  241 (292)
                      .++++|.|.+  |++.|...+.|..|++ +|+++
T Consensus         4 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~e   36 (37)
T 1va1_A            4 GKKKQHICHIQGCGKVYGKTSHLRAHLR-WHTGE   36 (37)
T ss_dssp             SSCCCEECCSTTCCCEESCHHHHHHHHH-HHHTT
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHH-hcCCC
Confidence            4456666663  6666666666666665 56554

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.19  E-value=7.3e-07  Score=46.10  Aligned_cols=27  Identities=30%  Similarity=0.428  Sum_probs=14.1

Q ss_pred             cccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        243 NFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       243 ~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      ||.|+.  |++.|.+...|..|++ .|.++
T Consensus         2 ~~~C~~--C~k~f~~~~~l~~H~~-~H~~~   28 (29)
T 1rik_A            2 KFACPE--CPKRFMRSDHLTLHIL-LHENK   28 (29)
T ss_dssp             CEECSS--SSCEESCSHHHHHHHT-GGGSC
T ss_pred             CccCCC--CCchhCCHHHHHHHHH-HhcCC
Confidence            455544  5555555555555555 35443

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.17  E-value=8.6e-07  Score=52.32  Aligned_cols=34  Identities=21%  Similarity=0.453  Sum_probs=27.9

Q ss_pred             hccCCCccccccCCCCcccccccccchHHHHHhHh-hcCCCC
Q psy11068         80 KHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMT-SHDEDK  120 (292)
Q Consensus        80 ~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~-~h~~~~  120 (292)
                      +|+++++|.|.+       |++.|.....|..|++ +|.++.
T Consensus         1 ~Ht~~kp~~C~~-------C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            1 GEDRDKPYACDI-------CGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             -CTTTSCEECTT-------TCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCCcCEECCC-------cCcccCCHHHHHHHhhhhcCCCC
Confidence            477889999998       9999999999999999 888764

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.17  E-value=1.3e-06  Score=45.13  Aligned_cols=29  Identities=31%  Similarity=0.725  Sum_probs=26.2

Q ss_pred             CCcccCCCcccccChhHHHHHHHHhcCCCC
Q psy11068        213 EDLVCKGCGKQFKVPCRLREHYKAVHESTK  242 (292)
Q Consensus       213 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~  242 (292)
                      +||.|..|++.|.....|..|++ +|.+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~-~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYR-SHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHH-HHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHH-HhcCCC
Confidence            47999999999999999999998 798763

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.16  E-value=9.6e-07  Score=45.63  Aligned_cols=29  Identities=31%  Similarity=0.527  Sum_probs=26.2

Q ss_pred             CCcccCCCcccccChhHHHHHHHHhcCCCC
Q psy11068        213 EDLVCKGCGKQFKVPCRLREHYKAVHESTK  242 (292)
Q Consensus       213 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~  242 (292)
                      +||.|..|++.|.....|..|++ +|.+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~-~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHIL-LHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHT-GGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHH-HhcCCC
Confidence            48999999999999999999998 898764

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.16  E-value=1.3e-06  Score=44.37  Aligned_cols=23  Identities=30%  Similarity=0.567  Sum_probs=10.5

Q ss_pred             CcccCCcCCccccccCHHHHHhHhh
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNK  266 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~  266 (292)
                      +||.|..  |++.|.+...|..|++
T Consensus         2 k~~~C~~--C~k~f~~~~~l~~H~~   24 (27)
T 2kvh_A            2 KPFSCSL--CPQRSRDFSAMTKHLR   24 (27)
T ss_dssp             CCEECSS--SSCEESSHHHHHHHHH
T ss_pred             cCccCCC--cChhhCCHHHHHHHHH
Confidence            3444433  4444444444444444

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.15  E-value=1.5e-06  Score=45.13  Aligned_cols=22  Identities=36%  Similarity=0.797  Sum_probs=10.0

Q ss_pred             cccCCcCCccccccCHHHHHhHhh
Q psy11068        243 NFKCTYDGCKLLFSTKSALKRHNK  266 (292)
Q Consensus       243 ~~~C~~~~C~~~f~~~~~l~~H~~  266 (292)
                      ||.|..  |++.|.....|..|++
T Consensus         2 ~~~C~~--C~k~f~~~~~l~~H~~   23 (30)
T 1klr_A            2 TYQCQY--CEFRSADSSNLKTHIK   23 (30)
T ss_dssp             CCCCSS--SSCCCSCSHHHHHHHH
T ss_pred             CccCCC--CCCccCCHHHHHHHHH
Confidence            344433  4444444444444444

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.15  E-value=1.1e-06  Score=45.40  Aligned_cols=26  Identities=38%  Similarity=0.649  Sum_probs=12.1

Q ss_pred             cccCCcCCccccccCHHHHHhHhhhhcCC
Q psy11068        243 NFKCTYDGCKLLFSTKSALKRHNKSKHLN  271 (292)
Q Consensus       243 ~~~C~~~~C~~~f~~~~~l~~H~~~~H~~  271 (292)
                      ||.|..  |++.|.+...|..|++ .|.+
T Consensus         2 ~~~C~~--C~k~f~~~~~l~~H~~-~H~~   27 (29)
T 2m0f_A            2 PLKCRE--CGKQFTTSGNLKRHLR-IHSG   27 (29)
T ss_dssp             CEECTT--TSCEESCHHHHHHHHH-HHHT
T ss_pred             CccCCC--CCCccCChhHHHHHHH-HhcC
Confidence            444443  4444444444444444 3443

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.15  E-value=2.9e-07  Score=54.13  Aligned_cols=38  Identities=24%  Similarity=0.433  Sum_probs=29.5

Q ss_pred             HhHHhhccCCCccccc--cCCCCcccccccccchHHHHHhHhhcCCC
Q psy11068         75 KIHLLKHFDKRPFKCK--LTTANNTPCMWGFFSKHKLLRHMTSHDED  119 (292)
Q Consensus        75 ~~H~~~h~~~~~~~C~--~~~~~~~~C~~~f~~~~~l~~H~~~h~~~  119 (292)
                      ..|...|.+++||.|.  .       |++.|.....|..|+++|.++
T Consensus         7 ~~~~~~H~~~k~~~C~~~~-------C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A            7 IDKYVKEMPDKTFECLFPG-------CTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             GGGSCEEETTTEEECCCTT-------CCCEECSSSSHHHHHHHHTTT
T ss_pred             HHHHhccCCCCCeECCCCC-------CCCccCCHHHHHHHHHHccCC
Confidence            3455668888888884  5       888888888888888888765

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.14  E-value=1.6e-06  Score=45.99  Aligned_cols=28  Identities=32%  Similarity=0.582  Sum_probs=18.0

Q ss_pred             CCcccC--CCcccccChhHHHHHHHHhcCCC
Q psy11068        213 EDLVCK--GCGKQFKVPCRLREHYKAVHEST  241 (292)
Q Consensus       213 ~~~~C~--~C~~~f~~~~~L~~H~~~~H~~~  241 (292)
                      +||.|.  .|++.|.....|..|++ +|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKK-SHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHG-GGTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHH-HccCC
Confidence            466666  66666666666666665 56554

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.14  E-value=1.5e-06  Score=45.80  Aligned_cols=27  Identities=30%  Similarity=0.676  Sum_probs=16.0

Q ss_pred             CcccC--CCcccccChhHHHHHHHHhcCCC
Q psy11068        214 DLVCK--GCGKQFKVPCRLREHYKAVHEST  241 (292)
Q Consensus       214 ~~~C~--~C~~~f~~~~~L~~H~~~~H~~~  241 (292)
                      ||.|.  .|++.|.....|..|++ +|+++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~-~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKR-THTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHT-TTSCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHH-HhcCC
Confidence            55665  56666666666666655 55554

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.13  E-value=1.4e-06  Score=44.87  Aligned_cols=21  Identities=33%  Similarity=0.649  Sum_probs=8.5

Q ss_pred             cccCCCcccccChhHHHHHHH
Q psy11068        215 LVCKGCGKQFKVPCRLREHYK  235 (292)
Q Consensus       215 ~~C~~C~~~f~~~~~L~~H~~  235 (292)
                      |.|..|++.|.....|..|++
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 2m0e_A            3 HKCPHCDKKFNQVGNLKAHLK   23 (29)
T ss_dssp             CCCSSCCCCCCTTTHHHHHHH
T ss_pred             CcCCCCCcccCCHHHHHHHHH
Confidence            334444444444444444433

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.12  E-value=1.2e-06  Score=44.84  Aligned_cols=23  Identities=26%  Similarity=0.678  Sum_probs=12.9

Q ss_pred             CcccCCcCCccccccCHHHHHhHhh
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNK  266 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~  266 (292)
                      +||.|..  |++.|.+...|..|++
T Consensus         2 k~~~C~~--C~k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            2 RPYSCSV--CGKRFSLKHQMETHYR   24 (28)
T ss_dssp             CSEECSS--SCCEESCHHHHHHHHT
T ss_pred             cCccCCC--CCcccCCHHHHHHHHH
Confidence            4555544  5555555555555555

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.11  E-value=1.8e-06  Score=44.20  Aligned_cols=28  Identities=32%  Similarity=0.776  Sum_probs=25.1

Q ss_pred             CCCcccCCCcccccChhHHHHHHHHhcCC
Q psy11068        212 PEDLVCKGCGKQFKVPCRLREHYKAVHES  240 (292)
Q Consensus       212 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~~  240 (292)
                      ++||.|..|++.|.....|..|++ +|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~-~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYR-VHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHT-TSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHH-hcCC
Confidence            368999999999999999999988 7864

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.11  E-value=1.1e-06  Score=44.81  Aligned_cols=23  Identities=13%  Similarity=0.553  Sum_probs=12.4

Q ss_pred             CcccCCcCCccccccCHHHHHhHhh
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNK  266 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~  266 (292)
                      +||+|..  |++.|.+...|..|++
T Consensus         2 k~~~C~~--C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            2 APYRCPL--CRAGCPSLASMQAHMR   24 (27)
T ss_dssp             CTEEETT--TTEEESCHHHHHHHHT
T ss_pred             cCcCCCC--CCcccCCHHHHHHHHH
Confidence            4555544  5555555555555554

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.10  E-value=5.5e-06  Score=52.01  Aligned_cols=25  Identities=24%  Similarity=0.410  Sum_probs=12.2

Q ss_pred             ceeCCCCCCCcccCCHHHHHHHHHH
Q psy11068        183 PYMCDYKGCGKSFYLMASLKSHQRV  207 (292)
Q Consensus       183 ~~~C~~~~C~~~f~~~~~l~~H~~~  207 (292)
                      +|.|...+|++.+.....|..|+++
T Consensus        38 ~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A           38 PLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             CEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CCEeeCCCCcCCCCChHHHHhhccc
Confidence            3455444455555544555555444

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.09  E-value=1.7e-06  Score=44.88  Aligned_cols=30  Identities=20%  Similarity=0.365  Sum_probs=26.5

Q ss_pred             CCcccCCCcccccChhHHHHHHHHhcCCCCc
Q psy11068        213 EDLVCKGCGKQFKVPCRLREHYKAVHESTKN  243 (292)
Q Consensus       213 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~  243 (292)
                      ++|.|..|++.|.....|..|++ +|.++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~-~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIK-TKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHH-HHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHH-HHccCCC
Confidence            47999999999999999999998 7877653

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.09  E-value=1.5e-06  Score=44.78  Aligned_cols=29  Identities=38%  Similarity=0.834  Sum_probs=26.2

Q ss_pred             CCcccCCCcccccChhHHHHHHHHhcCCCC
Q psy11068        213 EDLVCKGCGKQFKVPCRLREHYKAVHESTK  242 (292)
Q Consensus       213 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~  242 (292)
                      +||.|..|++.|.....|..|++ +|.+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~-~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLR-IHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHH-HHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHH-HhcCCC
Confidence            47999999999999999999998 898764

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.36  E-value=4.5e-07  Score=47.02  Aligned_cols=27  Identities=26%  Similarity=0.519  Sum_probs=14.1

Q ss_pred             cccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        243 NFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       243 ~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      ||.|..  |++.|.+...|..|++ .|.++
T Consensus         2 ~~~C~~--C~k~f~~~~~l~~H~~-~H~~~   28 (29)
T 2lvt_A            2 PCQCVM--CGKAFTQASSLIAHVR-QHTGE   28 (29)
Confidence            455544  5555555555555555 35443

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.07  E-value=2.8e-06  Score=53.63  Aligned_cols=30  Identities=40%  Similarity=0.562  Sum_probs=15.9

Q ss_pred             CCCCcccCCCcccccChhHHHHHHHHhcCCC
Q psy11068        211 NPEDLVCKGCGKQFKVPCRLREHYKAVHEST  241 (292)
Q Consensus       211 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~  241 (292)
                      +++||.|.+|++.|.....|..|++ +|++.
T Consensus        10 ~ekpy~C~~CgK~F~~~s~L~~H~r-~Htg~   39 (66)
T 2epp_A           10 EAGILPCGLCGKVFTDANRLRQHEA-QHGVT   39 (66)
T ss_dssp             CCCCCCCTTTCCCCSCHHHHHHHHH-HHTTT
T ss_pred             CccCcCCCCCCCccCCHHHHHhhhh-hhCCC
Confidence            3455555555555555555555555 45443

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.07  E-value=2.3e-06  Score=43.40  Aligned_cols=27  Identities=15%  Similarity=0.390  Sum_probs=24.5

Q ss_pred             CCCcccCCCcccccChhHHHHHHHHhcC
Q psy11068        212 PEDLVCKGCGKQFKVPCRLREHYKAVHE  239 (292)
Q Consensus       212 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~  239 (292)
                      ++||.|..|++.|.....|..|++ +|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~-~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLR-THG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHH-HCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHH-Hcc
Confidence            368999999999999999999998 774

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.07  E-value=1.7e-06  Score=43.98  Aligned_cols=27  Identities=15%  Similarity=0.304  Sum_probs=24.3

Q ss_pred             CCCcccCCCcccccChhHHHHHHHHhcC
Q psy11068        212 PEDLVCKGCGKQFKVPCRLREHYKAVHE  239 (292)
Q Consensus       212 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~  239 (292)
                      ++||.|..|++.|...+.|..|++ +|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~-~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMR-GHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHT-TCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHH-hcC
Confidence            368999999999999999999988 674

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.06  E-value=2.8e-06  Score=42.99  Aligned_cols=26  Identities=46%  Similarity=0.829  Sum_probs=17.3

Q ss_pred             cccCCcCCccccccCHHHHHhHhhhhcCC
Q psy11068        243 NFKCTYDGCKLLFSTKSALKRHNKSKHLN  271 (292)
Q Consensus       243 ~~~C~~~~C~~~f~~~~~l~~H~~~~H~~  271 (292)
                      ||+|..  |++.|.+...|..|++ .|++
T Consensus         1 ~~~C~~--C~k~f~~~~~l~~H~~-~h~~   26 (27)
T 1znf_A            1 XYKCGL--CERSFVEKSALSRHQR-VHKN   26 (27)
T ss_dssp             -CBCSS--SCCBCSSHHHHHHHGG-GTCC
T ss_pred             CccCCC--CCCcCCCHHHHHHHHH-HcCC
Confidence            467755  7777777777777776 4654

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.06  E-value=1.8e-06  Score=43.69  Aligned_cols=26  Identities=27%  Similarity=0.557  Sum_probs=14.5

Q ss_pred             CcccCCCcccccChhHHHHHHHHhcCC
Q psy11068        214 DLVCKGCGKQFKVPCRLREHYKAVHES  240 (292)
Q Consensus       214 ~~~C~~C~~~f~~~~~L~~H~~~~H~~  240 (292)
                      ||.|..|++.|.....|..|++ +|.+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~-~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQR-VHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGG-GTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHH-HcCC
Confidence            3556666666666666666655 4543

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.31  E-value=5.7e-07  Score=46.60  Aligned_cols=29  Identities=31%  Similarity=0.550  Sum_probs=26.0

Q ss_pred             CCcccCCCcccccChhHHHHHHHHhcCCCC
Q psy11068        213 EDLVCKGCGKQFKVPCRLREHYKAVHESTK  242 (292)
Q Consensus       213 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~  242 (292)
                      +||.|..|++.|.....|..|++ +|.+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~-~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVR-QHTGEK   29 (29)
Confidence            47999999999999999999998 887753

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.04  E-value=2.1e-06  Score=44.68  Aligned_cols=27  Identities=30%  Similarity=0.624  Sum_probs=14.6

Q ss_pred             cccCCcCCccccccCHHHHHhH-hhhhcCCC
Q psy11068        243 NFKCTYDGCKLLFSTKSALKRH-NKSKHLNM  272 (292)
Q Consensus       243 ~~~C~~~~C~~~f~~~~~l~~H-~~~~H~~~  272 (292)
                      ||.|..  |++.|.+...|..| ++ .|+++
T Consensus         2 ~~~C~~--C~k~f~~~~~l~~H~~~-~H~~~   29 (30)
T 1paa_A            2 AYACGL--CNRAFTRRDLLIRHAQK-IHSGN   29 (30)
T ss_dssp             CSBCTT--TCCBCSSSHHHHHHHTT-TSCCC
T ss_pred             CcCCcc--cCcccCChHHHHHHHHH-HccCC
Confidence            455544  55555555555555 33 45544

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.03  E-value=1.6e-06  Score=44.66  Aligned_cols=29  Identities=34%  Similarity=0.528  Sum_probs=25.8

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhhhcCCCC
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNMR  273 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~  273 (292)
                      +||.|..  |++.|.+...|..|++ .|.+++
T Consensus         1 k~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPH--CDKKFNQVGNLKAHLK-IHIADG   29 (29)
T ss_dssp             CCCCCSS--CCCCCCTTTHHHHHHH-HHHSCC
T ss_pred             CCCcCCC--CCcccCCHHHHHHHHH-HhccCC
Confidence            5899987  9999999999999999 687764

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.29  E-value=6.6e-07  Score=46.66  Aligned_cols=28  Identities=32%  Similarity=0.615  Sum_probs=17.3

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      +||.|..  |++.|.+...|..|++ .|.++
T Consensus         2 k~~~C~~--C~k~f~~~~~l~~H~~-~h~~~   29 (30)
T 2lvr_A            2 KPYVCIH--CQRQFADPGALQRHVR-IHTGE   29 (30)
Confidence            4566655  6666666666666666 45544

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.29  E-value=6.7e-07  Score=46.65  Aligned_cols=28  Identities=32%  Similarity=0.706  Sum_probs=17.8

Q ss_pred             CCcccCCCcccccChhHHHHHHHHhcCCC
Q psy11068        213 EDLVCKGCGKQFKVPCRLREHYKAVHEST  241 (292)
Q Consensus       213 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~  241 (292)
                      +||.|..|++.|.....|..|++ +|.++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~-~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVR-IHTGE   29 (30)
Confidence            45666666666666666666666 56543

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.01  E-value=2.9e-06  Score=44.08  Aligned_cols=30  Identities=20%  Similarity=0.392  Sum_probs=25.7

Q ss_pred             CCcccCCCcccccChhHHHHHHHHhcCCCC
Q psy11068        213 EDLVCKGCGKQFKVPCRLREHYKAVHESTK  242 (292)
Q Consensus       213 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~  242 (292)
                      +||.|..|++.|.....|..|+..+|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            479999999999999999999433898764

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.16  E-value=1.3e-06  Score=43.89  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=11.2

Q ss_pred             cccCCcCCccccccCHHHHHhHhh
Q psy11068        243 NFKCTYDGCKLLFSTKSALKRHNK  266 (292)
Q Consensus       243 ~~~C~~~~C~~~f~~~~~l~~H~~  266 (292)
                      ||.|..  |++.|.+...|..|++
T Consensus         2 p~~C~~--C~k~f~~~~~l~~H~~   23 (26)
T 2lvu_A            2 PYVCER--CGKRFVQSSQLANHIR   23 (26)
Confidence            455544  5555555555555554

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.05  E-value=2.2e-06  Score=43.00  Aligned_cols=26  Identities=35%  Similarity=0.810  Sum_probs=23.5

Q ss_pred             CCcccCCCcccccChhHHHHHHHHhcC
Q psy11068        213 EDLVCKGCGKQFKVPCRLREHYKAVHE  239 (292)
Q Consensus       213 ~~~~C~~C~~~f~~~~~L~~H~~~~H~  239 (292)
                      +||.|..|++.|.....|..|++ +|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~-~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIR-HHD   26 (26)
Confidence            47999999999999999999988 673

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.80  E-value=1.1e-05  Score=41.39  Aligned_cols=27  Identities=30%  Similarity=0.726  Sum_probs=15.3

Q ss_pred             cccCCcCCccccccCHHHHHhHhhhhcC
Q psy11068        243 NFKCTYDGCKLLFSTKSALKRHNKSKHL  270 (292)
Q Consensus       243 ~~~C~~~~C~~~f~~~~~l~~H~~~~H~  270 (292)
                      ||.|..+.|++.|.+...|..|++ .|+
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~-~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKK-IHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHG-GGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHH-HhC
Confidence            566651126666666666666666 454

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.74  E-value=1.4e-05  Score=40.96  Aligned_cols=25  Identities=36%  Similarity=0.790  Sum_probs=13.1

Q ss_pred             CcccC--CCcccccChhHHHHHHHHhcC
Q psy11068        214 DLVCK--GCGKQFKVPCRLREHYKAVHE  239 (292)
Q Consensus       214 ~~~C~--~C~~~f~~~~~L~~H~~~~H~  239 (292)
                      +|.|.  .|++.|...+.|..|++ +|+
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~-~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKK-IHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHG-GGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHH-HhC
Confidence            45555  55555555555555544 443

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.65  E-value=0.0018  Score=49.07  Aligned_cols=82  Identities=16%  Similarity=0.293  Sum_probs=38.3

Q ss_pred             eeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHh
Q psy11068        184 YMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKR  263 (292)
Q Consensus       184 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~  263 (292)
                      ..|...+|+..+. ...|..|+..-  ..+++.|+.|+..+ .+..|..|.. ..-..++-.|++  |+..|.. ..|..
T Consensus        83 v~C~n~GC~~~~~-~~~l~~H~~~C--~~~~v~C~~C~~~~-~r~~l~~H~~-~~C~~r~~~C~~--C~~~~~~-~~l~~  154 (170)
T 3hcs_A           83 VKCPNEGCLHKME-LRHLEDHQAHC--EFALMDCPQCQRPF-QKFHINIHIL-KDCPRRQVSCDN--CAASMAF-EDKEI  154 (170)
T ss_dssp             EECCSTTCCCEEE-GGGHHHHHTTC--TTSEEECTTTCCEE-EGGGHHHHHH-HTCTTCEEECTT--TCCEEEG-GGHHH
T ss_pred             cCCCCCCCCceec-HhHHHHHHhcC--CceeeECCCCChHH-HHHHHHHHhh-hhCCCCCeECCC--CCCccCH-HHHHh
Confidence            3443334554433 33445554322  12345566666555 3445556654 344455555655  6655533 34556


Q ss_pred             HhhhhcCCCCc
Q psy11068        264 HNKSKHLNMRM  274 (292)
Q Consensus       264 H~~~~H~~~~~  274 (292)
                      |.. .+.|+.+
T Consensus       155 H~~-~~~~~~~  164 (170)
T 3hcs_A          155 HDQ-NCPLALE  164 (170)
T ss_dssp             HHT-TCCC---
T ss_pred             HHH-hCcChhh
Confidence            655 4555543

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.41  E-value=0.00084  Score=47.43  Aligned_cols=29  Identities=24%  Similarity=0.354  Sum_probs=21.8

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhh
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKS  267 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~  267 (292)
                      .|+|++||.|..  |++.|.+...|..|+++
T Consensus        44 d~tGekpfyC~~--C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           44 DLPGGGLHRCLA--CARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSGGGGCSEETT--TTEECSSHHHHHHHTTC
T ss_pred             cCCCCcceEccc--CcchhCCHHHHHHHHhh
Confidence            467777788866  88888888888877764

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.33  E-value=0.0012  Score=47.34  Aligned_cols=77  Identities=17%  Similarity=0.266  Sum_probs=42.7

Q ss_pred             CCceeCCCCCCCcccCCHHHHHHHH--HHhcCCCCCcccCC------CcccccChhHHHHHHHHhcCCCCcccCCcCCcc
Q psy11068        181 SAPYMCDYKGCGKSFYLMASLKSHQ--RVHVTNPEDLVCKG------CGKQFKVPCRLREHYKAVHESTKNFKCTYDGCK  252 (292)
Q Consensus       181 ~~~~~C~~~~C~~~f~~~~~l~~H~--~~h~~~~~~~~C~~------C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~  252 (292)
                      .+++.|.+  |+..|.+.+.+..|.  +.|....+.+.+..      =++.+....    +.. .+.+.+.|-|.+  |+
T Consensus        30 ~~~~~C~~--C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~C~~--C~  100 (127)
T 1zu1_A           30 FSDTQCKV--CSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEI-SDGEDRSKCCPV--CN  100 (127)
T ss_dssp             BCSSEETT--TTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCC-SSCCCTTTEETT--TT
T ss_pred             CCCCcCcC--CCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----ccc-ccCCCCCeEcCC--CC
Confidence            35567766  777777777777776  34421111222210      012222111    111 355667788877  88


Q ss_pred             ccccCHHHHHhHhh
Q psy11068        253 LLFSTKSALKRHNK  266 (292)
Q Consensus       253 ~~f~~~~~l~~H~~  266 (292)
                      +.|.+...|..|+.
T Consensus       101 ~~f~s~~~~~~H~~  114 (127)
T 1zu1_A          101 MTFSSPVVAESHYI  114 (127)
T ss_dssp             EECSSHHHHHHHHT
T ss_pred             CEeCCHHHHHHHHC
Confidence            88888888888875

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.08  E-value=0.0039  Score=35.22  Aligned_cols=22  Identities=36%  Similarity=0.686  Sum_probs=11.7

Q ss_pred             CcccCCCcccccChhHHHHHHH
Q psy11068        214 DLVCKGCGKQFKVPCRLREHYK  235 (292)
Q Consensus       214 ~~~C~~C~~~f~~~~~L~~H~~  235 (292)
                      +|.|+.|+..|.....|+.||+
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhhh
Confidence            4555555555555555555544

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.86  E-value=0.0032  Score=47.72  Aligned_cols=145  Identities=16%  Similarity=0.308  Sum_probs=89.5

Q ss_pred             CCcccccCCCCcccccChHHHHhHHhhccCCCccccccCCCCcccccccccchHHHHHhHhhcCCCCCCccCCCcccchh
Q psy11068         54 QQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKR  133 (292)
Q Consensus        54 ~~~~~C~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~c~c~~C~~~  133 (292)
                      ...|.|+|  |...+...               +.++        ||-.|=. .-+...+....     ..|+  .|...
T Consensus        16 ~~~~~C~I--C~~~~~~p---------------v~~~--------CgH~fC~-~Ci~~~~~~~~-----~~CP--~Cr~~   62 (170)
T 3hcs_A           16 ESKYECPI--CLMALREA---------------VQTP--------CGHRFCK-ACIIKSIRDAG-----HKCP--VDNEI   62 (170)
T ss_dssp             CGGGBCTT--TCSBCSSE---------------EECT--------TSCEEEH-HHHHHHHHHHC-----SBCT--TTCCB
T ss_pred             CCCCCCCC--CChhhcCc---------------EECC--------CCCHHHH-HHHHHHHHhCC-----CCCC--CCccC
Confidence            34689998  88777643               3332        6666643 23333333211     2454  78776


Q ss_pred             cCChH-----HHHHHHHhcCCCCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHh
Q psy11068        134 FTTLS-----NLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH  208 (292)
Q Consensus       134 f~~~~-----~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h  208 (292)
                      +....     .+.+-+    ......|...||+..+. ...|..|+..-.  -.+..|+.  |+..+ .+..|..|+...
T Consensus        63 ~~~~~~~~~~~~~~~i----~~l~v~C~n~GC~~~~~-~~~l~~H~~~C~--~~~v~C~~--C~~~~-~r~~l~~H~~~~  132 (170)
T 3hcs_A           63 LLENQLFPDNFAKREI----LSLMVKCPNEGCLHKME-LRHLEDHQAHCE--FALMDCPQ--CQRPF-QKFHINIHILKD  132 (170)
T ss_dssp             CCGGGCEECHHHHHHH----HTSEEECCSTTCCCEEE-GGGHHHHHTTCT--TSEEECTT--TCCEE-EGGGHHHHHHHT
T ss_pred             cchhhhhhhHHHHHHH----hhcccCCCCCCCCceec-HhHHHHHHhcCC--ceeeECCC--CChHH-HHHHHHHHhhhh
Confidence            65431     122222    23456676566988765 567788875433  56788965  99987 567889998755


Q ss_pred             cCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcc
Q psy11068        209 VTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNF  244 (292)
Q Consensus       209 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~  244 (292)
                       =..++..|..|+..+.. ..|..|.. +++|..++
T Consensus       133 -C~~r~~~C~~C~~~~~~-~~l~~H~~-~~~~~~~~  165 (170)
T 3hcs_A          133 -CPRRQVSCDNCAASMAF-EDKEIHDQ-NCPLALEH  165 (170)
T ss_dssp             -CTTCEEECTTTCCEEEG-GGHHHHHT-TCCC----
T ss_pred             -CCCCCeECCCCCCccCH-HHHHhHHH-hCcChhhh
Confidence             34577889999988865 57899987 88887654

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.61  E-value=0.0033  Score=44.42  Aligned_cols=31  Identities=19%  Similarity=0.273  Sum_probs=23.2

Q ss_pred             hhccCCCccccccCCCCcccccccccchHHHHHhHhhc
Q psy11068         79 LKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH  116 (292)
Q Consensus        79 ~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h  116 (292)
                      ..|+|+++|.|..       |++.|.+...|..|+++.
T Consensus        43 ed~tGekpfyC~~-------C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           43 PDLPGGGLHRCLA-------CARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSSGGGGCSEETT-------TTEECSSHHHHHHHTTCH
T ss_pred             ccCCCCcceEccc-------CcchhCCHHHHHHHHhhh
Confidence            3566777888887       888888888888887643

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=95.18  E-value=0.019  Score=30.38  Aligned_cols=27  Identities=33%  Similarity=0.698  Sum_probs=19.0

Q ss_pred             CcccCCCcccccChhHHHHHHHHhcCC
Q psy11068        214 DLVCKGCGKQFKVPCRLREHYKAVHES  240 (292)
Q Consensus       214 ~~~C~~C~~~f~~~~~L~~H~~~~H~~  240 (292)
                      .|.|+.|.+.|.+...|..|....|..
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            367777777777777777777766654

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.03  E-value=0.029  Score=40.05  Aligned_cols=81  Identities=20%  Similarity=0.279  Sum_probs=48.4

Q ss_pred             CcccccCCCCcccccChHHHHhHH--hhccCC-CccccccCCCCcccccccccchHHHHHhHhhcCCCCCCccCCCcccc
Q psy11068         55 QLWSCPIVNCNFTSVNLNTFKIHL--LKHFDK-RPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCN  131 (292)
Q Consensus        55 ~~~~C~~~~C~~~~~~~~~l~~H~--~~h~~~-~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~c~c~~C~  131 (292)
                      +++.|.+  |+..|.+...+..|.  +.|... +.+.+.. +...+.=++.+....    +...+.+. ..|.|.  +|+
T Consensus        31 ~~~~C~~--C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~-~~~~C~--~C~  100 (127)
T 1zu1_A           31 SDTQCKV--CSAVLISESQKLAHYQSRKHANKVRRYMAIN-QGEDSVPAKKFKAAP----AEISDGED-RSKCCP--VCN  100 (127)
T ss_dssp             CSSEETT--TTEECCSHHHHHHHHHCHHHHHHHHHHHHHT-TCCCCCSCCCCSCCS----SCCSSCCC-TTTEET--TTT
T ss_pred             CCCcCcC--CCCEeCCHHHHHHHHCcHHHHHHHHHHhccc-CcccCCCCCccCCCc----cccccCCC-CCeEcC--CCC
Confidence            3589998  999999999999998  455432 2333311 000000022222111    22223333 457777  999


Q ss_pred             hhcCChHHHHHHHH
Q psy11068        132 KRFTTLSNLKMHMV  145 (292)
Q Consensus       132 ~~f~~~~~l~~H~~  145 (292)
                      +.|.+...|..|..
T Consensus       101 ~~f~s~~~~~~H~~  114 (127)
T 1zu1_A          101 MTFSSPVVAESHYI  114 (127)
T ss_dssp             EECSSHHHHHHHHT
T ss_pred             CEeCCHHHHHHHHC
Confidence            99999999999975

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.66  E-value=0.021  Score=32.24  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=21.5

Q ss_pred             CcccCCcCCccccccCHHHHHhHhh
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNK  266 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~  266 (292)
                      .+|.|+-  |+..|.....|+.||+
T Consensus        11 ~~~~CPr--Cn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPR--CNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTT--TCCCCSSHHHHHHHHH
T ss_pred             CceeCCc--ccccccchHHHHhhhh
Confidence            6799977  9999999999999998

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=94.37  E-value=0.035  Score=29.30  Aligned_cols=28  Identities=21%  Similarity=0.381  Sum_probs=25.3

Q ss_pred             cccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        243 NFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       243 ~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      .|.|++  |.+.|.+...|..|....|..+
T Consensus         5 GFiCP~--C~~~l~s~~~L~~Hye~~H~~~   32 (34)
T 3mjh_B            5 GFICPQ--CMKSLGSADELFKHYEAVHDAG   32 (34)
T ss_dssp             EEECTT--TCCEESSHHHHHHHHHHHTSSS
T ss_pred             ccCCcH--HHHHcCCHHHHHHHHHhccccC
Confidence            599988  9999999999999999888754

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=88.22  E-value=0.35  Score=24.65  Aligned_cols=25  Identities=24%  Similarity=0.505  Sum_probs=18.8

Q ss_pred             cccCCCcccccChhHHHHHHHHhcC
Q psy11068        215 LVCKGCGKQFKVPCRLREHYKAVHE  239 (292)
Q Consensus       215 ~~C~~C~~~f~~~~~L~~H~~~~H~  239 (292)
                      -.|..|.+.|+.-.+|..|++..|.
T Consensus        10 qhcrfckkkysdvknlikhire~hd   34 (37)
T 2elu_A           10 QHCRFCKKKYSDVKNLIKHIRDAHD   34 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3488888888888888888876553

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=85.70  E-value=0.8  Score=24.22  Aligned_cols=22  Identities=18%  Similarity=0.344  Sum_probs=11.7

Q ss_pred             CcccCCCcccccChhHHHHHHH
Q psy11068        214 DLVCKGCGKQFKVPCRLREHYK  235 (292)
Q Consensus       214 ~~~C~~C~~~f~~~~~L~~H~~  235 (292)
                      ++.|..|+-+|.....+..|.+
T Consensus         8 ~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            8 KKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CSEETTTTEECSSHHHHHHHHH
T ss_pred             cCeeccccceehhhHHHhhhhe
Confidence            4455555555555555555543

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=83.89  E-value=0.95  Score=30.29  Aligned_cols=53  Identities=23%  Similarity=0.503  Sum_probs=37.9

Q ss_pred             CcccCCCcccccChhHHHHHHHHhcCCCCcccCC-cCCccccccCHHHHHhHhhhhcCCCCc
Q psy11068        214 DLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT-YDGCKLLFSTKSALKRHNKSKHLNMRM  274 (292)
Q Consensus       214 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~-~~~C~~~f~~~~~l~~H~~~~H~~~~~  274 (292)
                      .-.|+.|...+..-.        .+..+.-|.|+ +.+|.++|-+...|+.|+...|....+
T Consensus        37 ~k~Cp~C~~~V~rVe--------~~~~~~if~C~~~~~CkrtyLs~rdlqaHI~~~H~~~~~   90 (101)
T 3vk6_A           37 DKMCPGCSDPVQRIE--------QCTRGSLFMCSIVQGCKRTYLSQRDLQAHINHRHMRAGK   90 (101)
T ss_dssp             CCBCTTTCCBCSEEE--------EEEGGGCCCCCCCCCCCCCCSSHHHHHHHHHHHTTTSCC
T ss_pred             CCCCcCcCCeeeeeE--------EeccCCEEECCCCCCHHHHhcCHHHHHHHHHHHhhhcCC
Confidence            345888887766542        23345678888 678889998888899998877765544

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=83.30  E-value=0.73  Score=23.45  Aligned_cols=25  Identities=28%  Similarity=0.573  Sum_probs=21.7

Q ss_pred             ccCCcCCccccccCHHHHHhHhhhhcC
Q psy11068        244 FKCTYDGCKLLFSTKSALKRHNKSKHL  270 (292)
Q Consensus       244 ~~C~~~~C~~~f~~~~~l~~H~~~~H~  270 (292)
                      --|..  |.+.++.-.+|..|++..|.
T Consensus        10 qhcrf--ckkkysdvknlikhire~hd   34 (37)
T 2elu_A           10 QHCRF--CKKKYSDVKNLIKHIRDAHD   34 (37)
T ss_dssp             CEETT--TTEECSSHHHHHHHHHHTTC
T ss_pred             HHHHH--HHHHHHHHHHHHHHHHHhcC
Confidence            45877  99999999999999997774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	292
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	1e-05
d2glia3	30	g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo	2e-05
d2glia3	30	g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo	0.002
d1a1ia1	29	g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus)	3e-05
d1ubdc4	28	g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger	6e-05
d1ubdc4	28	g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger	0.001
d1zfda_	32	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	1e-04
d1zfda_	32	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	0.002
d1ubdc3	30	g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger	2e-04
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	7e-04
d1ncsa_	47	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	0.001
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.001
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.001
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	0.001
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	0.003
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	0.004

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (92), Expect = 1e-05
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
           P+MC +  CGK F     L+ H+R H
Sbjct: 2   PFMCTWSYCGKRFTRSDELQRHKRTH 27

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (90), Expect = 2e-05
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
           P+ C ++GC KS+  + +LK+H R H
Sbjct: 2   PHKCTFEGCRKSYSRLENLKTHLRSH 27

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (76), Expect = 0.002
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRH 147
           K + C  + C K ++ L NLK H+  H
Sbjct: 1   KPHKCTFEGCRKSYSRLENLKTHLRSH 27

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.1 bits (89), Expect = 3e-05
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
           PY C  + C + F   A L  H R+H
Sbjct: 2   PYACPVESCDRRFSRSADLTRHIRIH 27

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (87), Expect = 6e-05
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
           PY+C + GC K F    +LKSH   H
Sbjct: 2   PYVCPFDGCNKKFAQSTNLKSHILTH 27

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (77), Expect = 0.001
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRH 147
           + Y C    CNK+F   +NLK H++ H
Sbjct: 1   RPYVCPFDGCNKKFAQSTNLKSHILTH 27

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 32

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.5 bits (85), Expect = 1e-04
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
           PY CD+ GC K+F     L  H++ H
Sbjct: 3   PYSCDHPGCDKAFVRNHDLIRHKKSH 28

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 32

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.1 bits (76), Expect = 0.002
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRHGK 149
           + Y CD   C+K F    +L  H   H +
Sbjct: 2   RPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (83), Expect = 2e-04
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
           P+ C ++GCGK F L  +L++H R+H
Sbjct: 2   PFQCTFEGCGKRFSLDFNLRTHVRIH 27

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (79), Expect = 7e-04
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 184 YMCDYKGCGKSFYLMASLKSHQRVH 208
           + C    CGKSF     LK H ++H
Sbjct: 2   FSCPEPACGKSFNFKKHLKEHMKLH 26

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.1 bits (78), Expect = 0.001
 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 166 TMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 208
           ++ +Y   + +       + C + GC K+F    +++SH + H
Sbjct: 6   SIDKYVKEMPDK-----TFECLFPGCTKTFKRRYNIRSHIQTH 43

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYK 235
            Y C    CGKSF   +    H  +H+       C  CGK+FK+   L  H K
Sbjct: 3   LYPCQ---CGKSFTHKSQRDRHMSMHLGLRPY-GCGVCGKKFKMKHHLVGHMK 51

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (77), Expect = 0.001
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEH 177
           K YPC    C K FT  S    HM  H       C    CG+KF+       H+K H
Sbjct: 2   KLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIH 53

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (77), Expect = 0.001
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
           PY C    CGK+F   + L  HQRVH
Sbjct: 7   PYGCVE--CGKAFSRSSILVQHQRVH 30

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.2 bits (74), Expect = 0.003
 Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
           P+ C    C ++F     L +H R H
Sbjct: 3   PFQCRI--CMRNFSRSDHLTTHIRTH 26

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 32.2 bits (74), Expect = 0.004
 Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
            ++C+   C ++F     LK H R H
Sbjct: 2   SFVCEV--CTRAFARQEHLKRHYRSH 25

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	292
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.64
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.58
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.43
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.22
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.22
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.19
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.14
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.13
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.1
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.1
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.1
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.08
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.07
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.06
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.05
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.04
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.04
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.04
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.02
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.01
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.99
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.97
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.96
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.96
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.95
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.95
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.93
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.89
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.87
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.81
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.81
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.8
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.79
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.77
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.71
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.66
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.65
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.59
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.57
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.35
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.27
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	98.26
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.25
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.13
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.06
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	98.05
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.03
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.02
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.95
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.92
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.9
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.89
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.88
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.83
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.8
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.77
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.73
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.73
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.71
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.7
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.69
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.69
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.65
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.59
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.58
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.57
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.54
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.52
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.5
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.45
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.36
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.36
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.34
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.26
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.22
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.22
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.12
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.09
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.06
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.04
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.02
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.01
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.99
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.92
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.87
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.82
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.78
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.46
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.35
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.31
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.26
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.22
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	96.06
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	95.94
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	95.93
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.82
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.82
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.74
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.52
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.43
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.07
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.9
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.81
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	94.44
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.39
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.29
d1x3ca1	61	Zinc finger protein 292, ZNF292 {Human (Homo sapie	93.57
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	93.48
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	93.28
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	92.39
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	91.53
d1y0jb1	36	U-shaped transcription factor, different fingers {	90.14
d1y0jb1	36	U-shaped transcription factor, different fingers {	90.08
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	87.75
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	87.2
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	85.89
d2glia1	32	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	85.68
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	83.55
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	82.98
d2glia1	32	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	82.9
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	82.81
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	81.49

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=6.1e-17  Score=97.54  Aligned_cols=53  Identities=28%  Similarity=0.521  Sum_probs=44.2

Q ss_pred             CCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhc
Q psy11068        212 PEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKH  269 (292)
Q Consensus       212 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H  269 (292)
                      ++||.| .||++|.....|..|++ +|++++||.|.+  ||++|.+.+.|..|++ .|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~-~Ht~ekpy~C~~--C~k~F~~~~~L~~H~r-~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMS-MHLGLRPYGCGV--CGKKFKMKHHLVGHMK-IH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHH-HHSCCCSEECTT--TSCEESSSHHHHHHHT-TT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhh-ccccccCCcCCC--cCCEecCHHHHHHHHh-cC
Confidence            478888 48888888888888877 888888888876  8888888888888887 45

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8e-16  Score=92.54  Aligned_cols=53  Identities=36%  Similarity=0.648  Sum_probs=45.8

Q ss_pred             CCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhc
Q psy11068        181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH  238 (292)
Q Consensus       181 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H  238 (292)
                      ++||.| .  ||+.|.....|..|+++| ++++||.|.+|+++|...+.|..|++ +|
T Consensus         1 EK~y~C-~--Cgk~F~~~~~l~~H~~~H-t~ekpy~C~~C~k~F~~~~~L~~H~r-~H   53 (53)
T d2csha1           1 DKLYPC-Q--CGKSFTHKSQRDRHMSMH-LGLRPYGCGVCGKKFKMKHHLVGHMK-IH   53 (53)
T ss_dssp             CCCEEC-T--TSCEESSHHHHHHHHHHH-SCCCSEECTTTSCEESSSHHHHHHHT-TT
T ss_pred             CcCCCC-C--CCCeECCHHHhHHHhhcc-ccccCCcCCCcCCEecCHHHHHHHHh-cC
Confidence            578999 4  999999999999999888 77789999999999999999999987 66

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.2e-14  Score=77.02  Aligned_cols=38  Identities=29%  Similarity=0.455  Sum_probs=25.7

Q ss_pred             CCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068        240 STKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL  279 (292)
Q Consensus       240 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  279 (292)
                      .++||+|..  ||++|.+.+.|.+|++.+|++++||.|++
T Consensus         2 ~~Kpy~C~~--Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQS--CGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSS--SCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCC--CCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            356777755  77777777777777654577777777753

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1e-13  Score=75.86  Aligned_cols=37  Identities=38%  Similarity=0.759  Sum_probs=31.1

Q ss_pred             CCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068        212 PEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY  248 (292)
Q Consensus       212 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  248 (292)
                      ++||+|.+||++|...+.|.+|++.+|++++||+|.+
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            5788888888888888888888876788888888853

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3e-12  Score=67.08  Aligned_cols=33  Identities=30%  Similarity=0.575  Sum_probs=26.3

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      +|++++||+|..  ||++|.+++.|..|++ .|+||
T Consensus         1 IHTgekpy~C~~--Cgk~F~~~~~L~~H~r-~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVE--CGKAFSRSSILVQHQR-VHTGE   33 (33)
T ss_dssp             TTTTCCCEECSS--SCCEESSHHHHHHHHH-GGGCS
T ss_pred             CcCCCCCeeCCC--CCCEeCchHHhHhhcc-ccCCC
Confidence            578888888866  8888888888888887 68775

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.9e-12  Score=68.75  Aligned_cols=34  Identities=35%  Similarity=0.622  Sum_probs=29.6

Q ss_pred             ccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCC
Q psy11068        244 FKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCP  278 (292)
Q Consensus       244 ~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~  278 (292)
                      |.|++++|+++|.++..|++|++ .|+|++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r-~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMK-LHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHH-HHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccC-eeCCCCCEeCC
Confidence            77887789999999999999998 69999999886

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.5e-12  Score=71.31  Aligned_cols=36  Identities=25%  Similarity=0.463  Sum_probs=28.9

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      |++ +|++++||+|..  ||++|.+.+.|..|++ .|+||
T Consensus         3 H~~-~Ht~ekpy~C~~--CgK~F~~~s~L~~H~r-~HtGE   38 (38)
T d2cota2           3 SEW-QQRERRRYKCDE--CGKSFSHSSDLSKHRR-THTGE   38 (38)
T ss_dssp             CCS-CCCCSCSSBCSS--SCCBCSCHHHHHHHHT-TTCCS
T ss_pred             cCc-ccCCCCCEecCC--CCceeeCHHHHHHhCc-cCCCC
Confidence            555 788888888866  8888888888888888 68876

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=6.2e-12  Score=68.77  Aligned_cols=37  Identities=22%  Similarity=0.429  Sum_probs=33.1

Q ss_pred             hHHhhccCCCccccccCCCCcccccccccchHHHHHhHhhcCCC
Q psy11068         76 IHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDED  119 (292)
Q Consensus        76 ~H~~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~  119 (292)
                      +|+++|++++||.|++       ||+.|...++|..|+++|+|+
T Consensus         2 rH~~~Ht~ekpy~C~~-------CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDE-------CGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSS-------SCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCC-------CCceeeCHHHHHHhCccCCCC
Confidence            5788999999999998       999999999999999999875

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.1e-11  Score=66.69  Aligned_cols=34  Identities=26%  Similarity=0.535  Sum_probs=28.3

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      +|+|++||+|++  |+++|++++.|.+|++..|.++
T Consensus         2 ~HTgekP~~C~~--C~k~F~~~~~L~~H~~~~H~~~   35 (36)
T d2ct1a2           2 THSGEKPYECYI--CHARFTQSGTMKMHILQKHTEN   35 (36)
T ss_dssp             CCSCCCSEECTT--TCCEESCHHHHHHHHHHHSSSS
T ss_pred             ccCCCCCEeCCC--CcccccchHHHHHHcccccCCC
Confidence            688999999977  9999999999999987567543

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.6e-11  Score=62.53  Aligned_cols=31  Identities=29%  Similarity=0.673  Sum_probs=27.8

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhhhcCCCC
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNMR  273 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~  273 (292)
                      +||.|++++|+++|++.+.|.+|++ +|+||+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r-~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKR-THTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHT-TTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcC-cccccC
Confidence            6899988889999999999999999 799885

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=1.2e-11  Score=67.16  Aligned_cols=35  Identities=29%  Similarity=0.499  Sum_probs=29.3

Q ss_pred             HHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCC
Q psy11068        233 HYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLN  271 (292)
Q Consensus       233 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~  271 (292)
                      |.| +|++++||+|..  |+++|.+++.|..|++ .|.+
T Consensus         2 h~R-~HTgeKPy~C~~--C~k~F~~~~~L~~H~r-~H~~   36 (37)
T d1p7aa_           2 STR-GSTGIKPFQCPD--CDRSFSRSDHLALHRK-RHML   36 (37)
T ss_dssp             CSS-TTCCSSSBCCTT--TCCCBSSHHHHHHHHG-GGTC
T ss_pred             CCC-ccCCccCeEeCC--CCCEecCHHHHHHHHh-cCcC
Confidence            445 799999999977  9999999999999988 6864

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.5e-11  Score=65.35  Aligned_cols=33  Identities=27%  Similarity=0.495  Sum_probs=27.9

Q ss_pred             hcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      +|+|++||+|.+  |+++|.+++.|..|++ .|.++
T Consensus         2 ~HTgekPy~C~~--C~k~F~~~~~L~~H~r-~H~~~   34 (36)
T d1x6ha2           2 THTGEKPYACSH--CDKTFRQKQLLDMHFK-RYHDP   34 (36)
T ss_dssp             TCCCCCCEECSS--SSCEESSHHHHHHHHH-HTTCS
T ss_pred             CCCCCCCEECCC--CCCCcCCHhHHHHhCc-ccCCC
Confidence            788999999977  9999999999999988 57665

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=3.9e-11  Score=63.66  Aligned_cols=32  Identities=31%  Similarity=0.552  Sum_probs=25.2

Q ss_pred             cCCCCcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        238 HESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       238 H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      |+|++||+|.+  |+++|.++..|.+|++ .|++.
T Consensus         2 ~TGekPy~C~~--C~k~F~~~~~L~~H~r-~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRI--CLSAFTTKANCARHLK-VHTDT   33 (35)
T ss_dssp             CSCCSCEECSS--SCCEESSHHHHHHHHG-GGTSC
T ss_pred             CCCCccccCCC--CCCcccChHHHHHHcc-ccCCc
Confidence            67888888877  8888888888888887 67764

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=4e-11  Score=61.11  Aligned_cols=30  Identities=37%  Similarity=0.718  Sum_probs=25.4

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      +||.|++++|+++|++++.|++|++ .|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r-~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLR-SHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHH-HTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcC-cCcCC
Confidence            5888888888888888888888888 68876

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.9e-11  Score=61.79  Aligned_cols=30  Identities=37%  Similarity=0.707  Sum_probs=26.3

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      +||.|++++|+++|++++.|.+|++ +|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r-~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVR-IHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHH-HHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCcccc-ccCCC
Confidence            6899988889999999999999998 68876

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.3e-11  Score=62.61  Aligned_cols=33  Identities=24%  Similarity=0.501  Sum_probs=29.8

Q ss_pred             hccCCCccccccCCCCcccccccccchHHHHHhHhhcCCC
Q psy11068         80 KHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDED  119 (292)
Q Consensus        80 ~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~  119 (292)
                      +|++++||+|..       |+++|...+.|..|+++|+++
T Consensus         1 IHTgekpy~C~~-------Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVE-------CGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSS-------SCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCC-------CCCEeCchHHhHhhccccCCC
Confidence            588999999998       999999999999999999875

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=4.3e-11  Score=64.88  Aligned_cols=35  Identities=23%  Similarity=0.324  Sum_probs=31.4

Q ss_pred             HHhhccCCCccccccCCCCcccccccccchHHHHHhHhhcCC
Q psy11068         77 HLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDE  118 (292)
Q Consensus        77 H~~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~  118 (292)
                      |.++|++++||+|.+       |++.|..+++|.+|+++|.+
T Consensus         2 h~R~HTgeKPy~C~~-------C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPD-------CDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTT-------TCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCC-------CCCEecCHHHHHHHHhcCcC
Confidence            678899999999998       99999999999999998864

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=2.9e-12  Score=73.35  Aligned_cols=42  Identities=24%  Similarity=0.546  Sum_probs=30.3

Q ss_pred             HHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCC
Q psy11068        229 RLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMR  273 (292)
Q Consensus       229 ~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~  273 (292)
                      .|.+|+  .|.+++||+|.+++|+++|.+++.|..|++ .|+||+
T Consensus         6 ~l~~h~--~h~gekpy~C~~~~C~k~F~~~~~L~~H~r-~Htgek   47 (47)
T d1ncsa_           6 SIDKYV--KEMPDKTFECLFPGCTKTFKRRYNIRSHIQ-THLEDR   47 (47)
T ss_dssp             SGGGSC--EEETTTEEECCCTTCCCEECSSSSHHHHHH-HHTTTC
T ss_pred             hhcchh--hccCCCCeECCcCCCCccccCchHHHhhcc-cccCCC
Confidence            445554  377788888866668888888888888887 687764

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.04  E-value=7.1e-11  Score=59.95  Aligned_cols=29  Identities=34%  Similarity=0.744  Sum_probs=20.2

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhhhcCCCC
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNMR  273 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~  273 (292)
                      +||.|++  |+++|.+++.|.+|++ .|+||+
T Consensus         1 kp~~C~~--C~k~F~~~~~L~~H~r-~HTgEK   29 (29)
T d2adra1           1 RSFVCEV--CTRAFARQEHLKRHYR-SHTNEK   29 (29)
T ss_dssp             CCBCCTT--TCCCBSCHHHHHHHHH-TTTSSC
T ss_pred             CcCCCCC--CCCCCCCchHcccccC-cccCCC
Confidence            4677766  7777777777777777 577764

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.02  E-value=8.1e-11  Score=59.73  Aligned_cols=29  Identities=31%  Similarity=0.725  Sum_probs=22.3

Q ss_pred             CCcccCCCcccccChhHHHHHHHHhcCCCC
Q psy11068        213 EDLVCKGCGKQFKVPCRLREHYKAVHESTK  242 (292)
Q Consensus       213 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~  242 (292)
                      +||.|++|+++|...+.|.+|++ +|+|++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r-~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYR-SHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHH-TTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccC-cccCCC
Confidence            47778888888888888888877 787764

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.2e-10  Score=62.33  Aligned_cols=26  Identities=42%  Similarity=0.977  Sum_probs=11.6

Q ss_pred             CcccccChhHHHHHHHHhcCCCCcccC
Q psy11068        220 CGKQFKVPCRLREHYKAVHESTKNFKC  246 (292)
Q Consensus       220 C~~~f~~~~~L~~H~~~~H~~~~~~~C  246 (292)
                      |+++|..+..|.+|++ +|++++||+|
T Consensus         9 C~k~F~~~~~L~~H~r-~Htgekpy~C   34 (36)
T d2dlka2           9 CGKSFNFKKHLKEHMK-LHSDTRDYIC   34 (36)
T ss_dssp             TCCEESSHHHHHHHHH-HHHTSCCCSC
T ss_pred             CCCeeCChhHhccccC-eeCCCCCEeC
Confidence            4444444444444444 3444444444

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1e-10  Score=62.91  Aligned_cols=34  Identities=24%  Similarity=0.431  Sum_probs=30.9

Q ss_pred             hhccCCCccccccCCCCcccccccccchHHHHHhHhhcCCC
Q psy11068         79 LKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDED  119 (292)
Q Consensus        79 ~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~  119 (292)
                      ++|+|++||+|.+       |+++|...+.|..|+++|+++
T Consensus         1 R~HTgekPy~C~~-------C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSH-------CDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSS-------SSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCC-------CCCCcCCHhHHHHhCcccCCC
Confidence            5799999999999       999999999999999999875

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.3e-10  Score=62.31  Aligned_cols=31  Identities=16%  Similarity=0.333  Sum_probs=19.8

Q ss_pred             CCCCCcccCCCcccccChhHHHHHHHHhcCC
Q psy11068        210 TNPEDLVCKGCGKQFKVPCRLREHYKAVHES  240 (292)
Q Consensus       210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~  240 (292)
                      +|++||+|++|++.|..+++|..|+++.|++
T Consensus         4 TgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           4 SGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             SCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            5666666666666666666666666545543

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.1e-10  Score=58.07  Aligned_cols=29  Identities=34%  Similarity=0.622  Sum_probs=16.3

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhhhcCCCC
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNMR  273 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~  273 (292)
                      +||.|++  |+++|.+++.|.+|++ .|+||+
T Consensus         1 Kpy~C~~--C~k~F~~~s~L~~H~r-~HtgeK   29 (29)
T d1sp1a_           1 KKFACPE--CPKRFMRSDHLSKHIK-THQNKK   29 (29)
T ss_dssp             CCSCCTT--TTCCCSCSHHHHHHHH-GGGCCC
T ss_pred             CCEECCc--CCCeecchHHhhhhcC-ccCCcC
Confidence            3555554  6666666666666655 455553

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=1.3e-10  Score=58.21  Aligned_cols=28  Identities=32%  Similarity=0.597  Sum_probs=14.8

Q ss_pred             CCcccCCcCCccccccCHHHHHhHhhhhcCC
Q psy11068        241 TKNFKCTYDGCKLLFSTKSALKRHNKSKHLN  271 (292)
Q Consensus       241 ~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~  271 (292)
                      |+||+|++  |+++|.+++.|.+|++ .|+|
T Consensus         1 EKPy~C~~--C~k~F~~~~~L~~H~r-~HTG   28 (28)
T d1a1ia2           1 QKPFQCRI--CMRNFSRSDHLTTHIR-THTG   28 (28)
T ss_dssp             CCCEECTT--TCCEESCHHHHHHHHH-HHHC
T ss_pred             CcCccCCC--CcCEecccccccccCC-CccC
Confidence            34555544  5555555555555555 4543

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.8e-10  Score=58.29  Aligned_cols=29  Identities=31%  Similarity=0.636  Sum_probs=27.4

Q ss_pred             CCcccCCCcccccChhHHHHHHHHhcCCCC
Q psy11068        213 EDLVCKGCGKQFKVPCRLREHYKAVHESTK  242 (292)
Q Consensus       213 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~  242 (292)
                      +||.|++|+++|..++.|.+|++ +|++++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r-~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIK-THQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHH-GGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcC-ccCCcC
Confidence            58999999999999999999999 999985

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=1.4e-10  Score=58.05  Aligned_cols=28  Identities=21%  Similarity=0.510  Sum_probs=26.3

Q ss_pred             CCCcccCCCcccccChhHHHHHHHHhcCC
Q psy11068        212 PEDLVCKGCGKQFKVPCRLREHYKAVHES  240 (292)
Q Consensus       212 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~~  240 (292)
                      ++||+|++|+++|..++.|..|++ +|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r-~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIR-THTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHH-HHHC
T ss_pred             CcCccCCCCcCEecccccccccCC-CccC
Confidence            589999999999999999999999 8976

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.93  E-value=2.9e-10  Score=60.23  Aligned_cols=32  Identities=34%  Similarity=0.776  Sum_probs=28.6

Q ss_pred             ccCCCccccccCCCCcccccccccchHHHHHhHhhcCCC
Q psy11068         81 HFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDED  119 (292)
Q Consensus        81 h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~  119 (292)
                      |+|++||+|.+       |++.|..+++|.+|+++|+..
T Consensus         2 ~TGekPy~C~~-------C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRI-------CLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSS-------SCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCC-------CCCcccChHHHHHHccccCCc
Confidence            68899999998       999999999999999998765

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=2.8e-10  Score=57.41  Aligned_cols=29  Identities=28%  Similarity=0.636  Sum_probs=25.6

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhhhcCC
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLN  271 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~  271 (292)
                      +||.|++++|+++|++.+.|.+|++ .|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r-~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIR-IHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTH-HHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcC-ccCC
Confidence            6899998899999999999999998 6875

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=6.3e-10  Score=57.49  Aligned_cols=31  Identities=29%  Similarity=0.620  Sum_probs=26.3

Q ss_pred             CCcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        241 TKNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       241 ~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      ++||.|++++|+++|++.+.|.+|++ .|+..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r-~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKK-SHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHG-GGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhh-hccCC
Confidence            57899988889999999999999998 68653

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=7.6e-10  Score=53.87  Aligned_cols=16  Identities=38%  Similarity=0.654  Sum_probs=6.3

Q ss_pred             ccccccCHHHHHhHhh
Q psy11068        251 CKLLFSTKSALKRHNK  266 (292)
Q Consensus       251 C~~~f~~~~~l~~H~~  266 (292)
                      ||++|..++.|..|++
T Consensus         8 CgK~F~~~s~L~~Hqr   23 (26)
T d1x6ea2           8 CGKAFSQNSGLINHQR   23 (26)
T ss_dssp             SCCEESSHHHHHHHHH
T ss_pred             CcCeeccCcccccCcc
Confidence            3333333333333333

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.6e-09  Score=55.63  Aligned_cols=26  Identities=42%  Similarity=0.957  Sum_probs=14.4

Q ss_pred             ceeCCCCCCCcccCCHHHHHHHHHHh
Q psy11068        183 PYMCDYKGCGKSFYLMASLKSHQRVH  208 (292)
Q Consensus       183 ~~~C~~~~C~~~f~~~~~l~~H~~~h  208 (292)
                      ||.|++++|++.|...+.|.+|+++|
T Consensus         2 pf~C~~~~C~k~F~~~~~L~~H~r~H   27 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSDELQRHKRTH   27 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTT
T ss_pred             cCCCcCCCCCcCcCChhHhhhhcCcc
Confidence            45555555555555555555555555

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=4.1e-10  Score=56.07  Aligned_cols=28  Identities=32%  Similarity=0.758  Sum_probs=23.5

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhhhcC
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKSKHL  270 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H~  270 (292)
                      +||.|++++|+++|++.+.|++|++ .|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r-~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHIL-THA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHH-HHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHh-hcc
Confidence            5888888888888888888888888 574

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.7e-09  Score=55.04  Aligned_cols=27  Identities=44%  Similarity=1.085  Sum_probs=15.9

Q ss_pred             CceeCCCCCCCcccCCHHHHHHHHHHh
Q psy11068        182 APYMCDYKGCGKSFYLMASLKSHQRVH  208 (292)
Q Consensus       182 ~~~~C~~~~C~~~f~~~~~l~~H~~~h  208 (292)
                      +||.|++++|+++|...+.|.+|+++|
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~H   27 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIH   27 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHH
T ss_pred             CCccCCCCCCCceECcHHHcCcccccc
Confidence            355565555666666666666666655

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.77  E-value=1.6e-10  Score=65.94  Aligned_cols=39  Identities=21%  Similarity=0.406  Sum_probs=22.8

Q ss_pred             HHHHHHHhcCCCCCcccCC--CcccccChhHHHHHHHHhcCCCC
Q psy11068        201 LKSHQRVHVTNPEDLVCKG--CGKQFKVPCRLREHYKAVHESTK  242 (292)
Q Consensus       201 l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~~  242 (292)
                      |.+|+. | .+++||.|.+  |+++|...+.|..|++ +|+|++
T Consensus         7 l~~h~~-h-~gekpy~C~~~~C~k~F~~~~~L~~H~r-~Htgek   47 (47)
T d1ncsa_           7 IDKYVK-E-MPDKTFECLFPGCTKTFKRRYNIRSHIQ-THLEDR   47 (47)
T ss_dssp             GGGSCE-E-ETTTEEECCCTTCCCEECSSSSHHHHHH-HHTTTC
T ss_pred             hcchhh-c-cCCCCeECCcCCCCccccCchHHHhhcc-cccCCC
Confidence            344443 3 5556666655  6666666666666666 566653

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=4.8e-09  Score=53.24  Aligned_cols=26  Identities=42%  Similarity=0.920  Sum_probs=14.2

Q ss_pred             ceeCCCCCCCcccCCHHHHHHHHHHh
Q psy11068        183 PYMCDYKGCGKSFYLMASLKSHQRVH  208 (292)
Q Consensus       183 ~~~C~~~~C~~~f~~~~~l~~H~~~h  208 (292)
                      ||.|.+++|+++|...+.|++|+++|
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~H   27 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRSH   27 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHT
T ss_pred             CeeCCCCCCCceECChhHhhhhcCcC
Confidence            45555555555555555555555555

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=4e-09  Score=51.24  Aligned_cols=26  Identities=31%  Similarity=0.652  Sum_probs=24.3

Q ss_pred             CCcccCCCcccccChhHHHHHHHHhcC
Q psy11068        213 EDLVCKGCGKQFKVPCRLREHYKAVHE  239 (292)
Q Consensus       213 ~~~~C~~C~~~f~~~~~L~~H~~~~H~  239 (292)
                      +||+|.+||++|...+.|..|++ +|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~Hqr-iHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQR-IHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH-HHH
T ss_pred             CCccCCCCcCeeccCcccccCcc-CCC
Confidence            69999999999999999999988 884

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.65  E-value=7.4e-09  Score=52.05  Aligned_cols=27  Identities=37%  Similarity=0.811  Sum_probs=17.8

Q ss_pred             CceeCCCCCCCcccCCHHHHHHHHHHh
Q psy11068        182 APYMCDYKGCGKSFYLMASLKSHQRVH  208 (292)
Q Consensus       182 ~~~~C~~~~C~~~f~~~~~l~~H~~~h  208 (292)
                      +||.|.+++|++.|...+.|.+|+++|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~H   27 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIH   27 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCcc
Confidence            456666666666666666666666666

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=7.8e-09  Score=51.34  Aligned_cols=27  Identities=44%  Similarity=0.928  Sum_probs=18.9

Q ss_pred             CceeCCCCCCCcccCCHHHHHHHHHHh
Q psy11068        182 APYMCDYKGCGKSFYLMASLKSHQRVH  208 (292)
Q Consensus       182 ~~~~C~~~~C~~~f~~~~~l~~H~~~h  208 (292)
                      +||.|++++|+++|...+.|++|+++|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            467777667777777777777777766

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=2.2e-08  Score=51.57  Aligned_cols=30  Identities=40%  Similarity=0.841  Sum_probs=19.7

Q ss_pred             CCccccccCCCCcccccccccchHHHHHhHhhcCC
Q psy11068         84 KRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDE  118 (292)
Q Consensus        84 ~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~  118 (292)
                      ++||.|.+.|     |++.|.+..+|.+|+++|+.
T Consensus         1 ErP~~C~~pg-----C~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPG-----CDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTT-----CCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCC-----CCCeeCCHHHHHHHhhhccC
Confidence            4566666644     77777777777777666654

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.3e-07  Score=45.69  Aligned_cols=28  Identities=32%  Similarity=0.738  Sum_probs=24.5

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhhhc
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKSKH  269 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H  269 (292)
                      +||.|.+++|++++...++|+.|++++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            5899998899999999999999998655

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=3.3e-07  Score=42.04  Aligned_cols=26  Identities=38%  Similarity=0.608  Sum_probs=19.3

Q ss_pred             cccCCcCCccccccCHHHHHhHhhhhcCC
Q psy11068        243 NFKCTYDGCKLLFSTKSALKRHNKSKHLN  271 (292)
Q Consensus       243 ~~~C~~~~C~~~f~~~~~l~~H~~~~H~~  271 (292)
                      |.+|++  |++.|+++..|+.||| .|+|
T Consensus         1 phkc~~--c~kcfsrkdklk~hmr-~htg   26 (26)
T d2dmda2           1 PHKCEV--CGKCFSRKDKLKTHMR-CHTG   26 (26)
T ss_dssp             CCCBTT--TTBCCCCHHHHHHHGG-GCCC
T ss_pred             CCccch--hhhHhcchhHHHHHhh-ccCC
Confidence            467766  8888888888888887 4754

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=98.26  E-value=2.3e-07  Score=43.87  Aligned_cols=27  Identities=44%  Similarity=0.801  Sum_probs=24.9

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhhhc
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKSKH  269 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H  269 (292)
                      .||+|+.++|+++|+..+.|++|.+ +|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhek-vh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEK-VH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHH-HH
T ss_pred             CCccCCccCccccccCHHHHhhhhh-cc
Confidence            5899999999999999999999998 56

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=4.4e-07  Score=43.80  Aligned_cols=28  Identities=32%  Similarity=0.692  Sum_probs=20.7

Q ss_pred             CceeCCCCCCCcccCCHHHHHHHHHHhc
Q psy11068        182 APYMCDYKGCGKSFYLMASLKSHQRVHV  209 (292)
Q Consensus       182 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~  209 (292)
                      +||.|.+++|++++...++|++|++.+|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            4677777777777777777777777654

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=1e-06  Score=41.86  Aligned_cols=27  Identities=41%  Similarity=0.710  Sum_probs=19.5

Q ss_pred             CCcccCCcCCccccccCHHHHHhHhhhhcC
Q psy11068        241 TKNFKCTYDGCKLLFSTKSALKRHNKSKHL  270 (292)
Q Consensus       241 ~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~  270 (292)
                      ++||.|.+  ||+.|.+....++|.+ .|.
T Consensus         1 EkPf~C~~--CgrkFArsderkRH~k-iH~   27 (28)
T d1a1ia3           1 EKPFACDI--CGRKFARSDERKRHTK-IHL   27 (28)
T ss_dssp             CCCEECTT--TCCEESSHHHHHHHHG-GGC
T ss_pred             CCCcccch--hhhhhhcchhhhhhhh-hcc
Confidence            46777766  7777777777777777 563

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.5e-06  Score=39.82  Aligned_cols=20  Identities=40%  Similarity=0.508  Sum_probs=12.3

Q ss_pred             ccccccchHHHHHhHhhcCC
Q psy11068         99 CMWGFFSKHKLLRHMTSHDE  118 (292)
Q Consensus        99 C~~~f~~~~~l~~H~~~h~~  118 (292)
                      |++.|.++..|..|++.|++
T Consensus         7 c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           7 CGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             TTBCCCCHHHHHHHGGGCCC
T ss_pred             hhhHhcchhHHHHHhhccCC
Confidence            66666666666666666553

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.5e-06  Score=41.34  Aligned_cols=29  Identities=38%  Similarity=0.726  Sum_probs=20.7

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      +||+|.+  |.......++|+.|+++.|..+
T Consensus         1 kpy~cqy--c~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQY--CEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSS--SSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccc--cccccccchhhhhhhhcccccC
Confidence            4677777  7777777777777777777655

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=5e-07  Score=43.98  Aligned_cols=31  Identities=32%  Similarity=0.615  Sum_probs=25.6

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      +||.|.+++|.|+|+..+....|..++|.+|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccCC
Confidence            5899988899999999999999974478654

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.3e-06  Score=43.12  Aligned_cols=29  Identities=24%  Similarity=0.528  Sum_probs=16.1

Q ss_pred             ccCCcCCccccccCHHHHHhHhhhhcCCCCcC
Q psy11068        244 FKCTYDGCKLLFSTKSALKRHNKSKHLNMRMF  275 (292)
Q Consensus       244 ~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~  275 (292)
                      ..|..  ||+.|.....|.+|.. .|++|+||
T Consensus         6 ~~ce~--cgk~frdvyhlnrhkl-shs~ekpy   34 (35)
T d2epra1           6 VACEI--CGKIFRDVYHLNRHKL-SHSGEKPY   34 (35)
T ss_dssp             EEETT--TTEEESSHHHHHHHGG-GSCSCCCC
T ss_pred             hhHHH--HHHHHHHHHHHHhhhc-ccCCCCCC
Confidence            44544  5555555555555555 35555555

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.95  E-value=4.7e-06  Score=39.28  Aligned_cols=27  Identities=48%  Similarity=0.957  Sum_probs=21.0

Q ss_pred             CceeCCCCCCCcccCCHHHHHHHHHHh
Q psy11068        182 APYMCDYKGCGKSFYLMASLKSHQRVH  208 (292)
Q Consensus       182 ~~~~C~~~~C~~~f~~~~~l~~H~~~h  208 (292)
                      .||.|+..+|++.|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            467787777888888888888887776

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2.5e-06  Score=39.91  Aligned_cols=24  Identities=42%  Similarity=0.839  Sum_probs=10.4

Q ss_pred             ccCCCcccccChhHHHHHHHHhcCC
Q psy11068        216 VCKGCGKQFKVPCRLREHYKAVHES  240 (292)
Q Consensus       216 ~C~~C~~~f~~~~~L~~H~~~~H~~  240 (292)
                      .|.+||++|...+.|++|.. +|++
T Consensus         4 vc~ecgkaf~essklkrh~l-vhtg   27 (28)
T d1ubdc2           4 VCAECGKAFVESSKLKRHQL-VHTG   27 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHGG-GTSC
T ss_pred             hHHHHhHHHHHHHHHHHHhh-cccC
Confidence            34444444444444444433 4443

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=3.3e-06  Score=40.05  Aligned_cols=27  Identities=30%  Similarity=0.624  Sum_probs=20.7

Q ss_pred             CCccccccCCCCcccccccccchHHHHHhHhhcC
Q psy11068         84 KRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHD  117 (292)
Q Consensus        84 ~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~  117 (292)
                      ++||.|++       ||+.|......++|.++|.
T Consensus         1 EkPf~C~~-------CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDI-------CGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTT-------TCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccch-------hhhhhhcchhhhhhhhhcc
Confidence            46788887       8888888888888877764

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=4.5e-06  Score=41.12  Aligned_cols=32  Identities=28%  Similarity=0.586  Sum_probs=29.0

Q ss_pred             CCcccCCCcccccChhHHHHHHHHhcCCCCccc
Q psy11068        213 EDLVCKGCGKQFKVPCRLREHYKAVHESTKNFK  245 (292)
Q Consensus       213 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~  245 (292)
                      +...|..||+.|...-.|.+|.. .|++++||.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhkl-shs~ekpys   35 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKL-SHSGEKPYS   35 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGG-GSCSCCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhc-ccCCCCCCC
Confidence            45789999999999999999976 999999984

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=5.3e-06  Score=38.98  Aligned_cols=28  Identities=29%  Similarity=0.536  Sum_probs=18.7

Q ss_pred             CCcccCCcCCccccccCHHHHHhHhhhhcCC
Q psy11068        241 TKNFKCTYDGCKLLFSTKSALKRHNKSKHLN  271 (292)
Q Consensus       241 ~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~  271 (292)
                      ++||+|..  |.++-...+.|..|++ .|+|
T Consensus         1 erpfkcql--csy~srnssqltvhlr-~htg   28 (29)
T d2dmda3           1 ERPFKCQI--CPYASRNSSQLTVHLR-SHTG   28 (29)
T ss_dssp             CCCEECSS--SSCEESSHHHHHHHHT-TCCS
T ss_pred             CCcceeee--cccccCCchheEEeee-cccC
Confidence            46677766  7776667777777776 4665

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=9e-06  Score=38.42  Aligned_cols=26  Identities=31%  Similarity=0.769  Sum_probs=11.9

Q ss_pred             cccCCCcccccChhHHHHHHHHhcCCC
Q psy11068        215 LVCKGCGKQFKVPCRLREHYKAVHEST  241 (292)
Q Consensus       215 ~~C~~C~~~f~~~~~L~~H~~~~H~~~  241 (292)
                      |.|+.|+.....++-|.+|++ .|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIR-sHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIR-THTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHH-HTSSC
T ss_pred             ccccccCcccCCHHHHHHHHH-HhcCC
Confidence            344444444444444444444 44443

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=6.5e-06  Score=38.65  Aligned_cols=27  Identities=19%  Similarity=0.393  Sum_probs=16.6

Q ss_pred             CCcccCCCcccccChhHHHHHHHHhcCC
Q psy11068        213 EDLVCKGCGKQFKVPCRLREHYKAVHES  240 (292)
Q Consensus       213 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~  240 (292)
                      +||+|..|...-...+.|..|++ .|+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr-~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLR-SHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHT-TCCS
T ss_pred             CcceeeecccccCCchheEEeee-cccC
Confidence            56666666666666666666665 5554

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.77  E-value=4.3e-06  Score=39.60  Aligned_cols=30  Identities=33%  Similarity=0.631  Sum_probs=25.9

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      +||.|.+++|.+.|.+-..|.+|.. .|+||
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~-thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSL-THTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHH-HHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhc-cccCC
Confidence            5889988899999999999999987 68775

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=8.9e-06  Score=39.09  Aligned_cols=28  Identities=32%  Similarity=0.623  Sum_probs=18.8

Q ss_pred             CCcccCCcCCccccccCHHHHHhHhhhhcCC
Q psy11068        241 TKNFKCTYDGCKLLFSTKSALKRHNKSKHLN  271 (292)
Q Consensus       241 ~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~  271 (292)
                      ++||.|++  |+..|.++..+..|.++ |.|
T Consensus         1 ekp~~cpi--c~qrfkrkdrmsyhvrs-hdg   28 (32)
T d2epqa1           1 EKPYSCPV--CGLRFKRKDRMSYHVRS-HDG   28 (32)
T ss_dssp             CCSSEETT--TTEECSCHHHHHHHHHH-HSC
T ss_pred             CCCcccch--HHHHhhccccceEeeec-ccC
Confidence            46777766  77777777777777773 544

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=1.9e-05  Score=37.50  Aligned_cols=29  Identities=21%  Similarity=0.375  Sum_probs=20.7

Q ss_pred             CCcccCCCcccccChhHHHHHHHHhcCCC
Q psy11068        213 EDLVCKGCGKQFKVPCRLREHYKAVHEST  241 (292)
Q Consensus       213 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~  241 (292)
                      +||+|..|.......++|..|+++.|+.+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            46777777777777777777777767654

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=1.1e-05  Score=38.70  Aligned_cols=29  Identities=31%  Similarity=0.740  Sum_probs=19.2

Q ss_pred             CCccccccCCCCcccccccccchHHHHHhHhhcCCC
Q psy11068         84 KRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDED  119 (292)
Q Consensus        84 ~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~  119 (292)
                      ++||.|++       |+..|..+..+..|.++|.|.
T Consensus         1 ekp~~cpi-------c~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPV-------CGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETT-------TTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccch-------HHHHhhccccceEeeecccCc
Confidence            35666666       777777777677776666654

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1.8e-05  Score=37.41  Aligned_cols=28  Identities=29%  Similarity=0.612  Sum_probs=25.3

Q ss_pred             cccCCcCCccccccCHHHHHhHhhhhcCCCC
Q psy11068        243 NFKCTYDGCKLLFSTKSALKRHNKSKHLNMR  273 (292)
Q Consensus       243 ~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~  273 (292)
                      .|.|++  |+......+.|+.|+| .|++++
T Consensus         1 kYvC~~--Cg~~C~KPSvL~KHIR-sHT~~R   28 (28)
T d1bboa1           1 KYICEE--CGIRAKKPSMLKKHIR-THTDVR   28 (28)
T ss_dssp             CCBCTT--TCCBCSSHHHHHHHHH-HTSSCC
T ss_pred             Cccccc--cCcccCCHHHHHHHHH-HhcCCC
Confidence            388988  9999999999999999 699874

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.69  E-value=7.5e-06  Score=38.74  Aligned_cols=30  Identities=43%  Similarity=0.795  Sum_probs=23.0

Q ss_pred             CccccccCCCCcccccccccchHHHHHhHhhcCCC
Q psy11068         85 RPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDED  119 (292)
Q Consensus        85 ~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~  119 (292)
                      +||.|..+|     |.+.|.+...|.+|..+|+++
T Consensus         1 ~pfpc~~eg-----c~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEG-----CEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSS-----CCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCccccc-----ccccchhhhhhhhhhccccCC
Confidence            467777766     888888888888888877764

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.3e-05  Score=41.25  Aligned_cols=30  Identities=37%  Similarity=0.637  Sum_probs=26.3

Q ss_pred             CCCcccCCcCCccccccCHHHHHhHhhhhcC
Q psy11068        240 STKNFKCTYDGCKLLFSTKSALKRHNKSKHL  270 (292)
Q Consensus       240 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~  270 (292)
                      .++||.|..++|+.+|.+...|..|.. .|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~-KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKH-KHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHH-HHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhh-hhe
Confidence            478999988999999999999999988 674

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.65  E-value=9.7e-06  Score=39.36  Aligned_cols=27  Identities=26%  Similarity=0.609  Sum_probs=15.4

Q ss_pred             cccCCcCCccccccCHHHHHhHhhhhcCC
Q psy11068        243 NFKCTYDGCKLLFSTKSALKRHNKSKHLN  271 (292)
Q Consensus       243 ~~~C~~~~C~~~f~~~~~l~~H~~~~H~~  271 (292)
                      ||.|.+  |++.|+++..|.+|....|.+
T Consensus         1 Pf~C~~--C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGL--CNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTT--TCCEESSHHHHHHHHTTTSCC
T ss_pred             Cccccc--ccchhhHHHHHHHHHHHHhcC
Confidence            455655  666666666666665545544

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=2.9e-05  Score=36.11  Aligned_cols=22  Identities=23%  Similarity=0.446  Sum_probs=10.6

Q ss_pred             CcccCCCcccccChhHHHHHHH
Q psy11068        214 DLVCKGCGKQFKVPCRLREHYK  235 (292)
Q Consensus       214 ~~~C~~C~~~f~~~~~L~~H~~  235 (292)
                      ||+|..|+.+-...++|.+|+|
T Consensus         3 p~kck~cdyaaadsssl~kh~r   24 (28)
T d2dmda1           3 PYKCKTCDYAAADSSSLNKHLR   24 (28)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CcccccccchhcchhhHhhhhh
Confidence            4444444444444444444444

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.58  E-value=2.5e-05  Score=35.85  Aligned_cols=26  Identities=38%  Similarity=0.654  Sum_probs=17.9

Q ss_pred             cCCcCCccccccCHHHHHhHhhhhcCCCC
Q psy11068        245 KCTYDGCKLLFSTKSALKRHNKSKHLNMR  273 (292)
Q Consensus       245 ~C~~~~C~~~f~~~~~l~~H~~~~H~~~~  273 (292)
                      +|+.  |.+.|.++..|+.|-| .|+||+
T Consensus         2 qcp~--c~k~f~skyylkvhnr-~htgek   27 (27)
T d2dlqa4           2 ECPT--CHKKFLSKYYLKVHNR-KHTGEK   27 (27)
T ss_dssp             CCTT--TCCCCSSHHHHHHHHH-HHSSCC
T ss_pred             cCcc--hHHHHHHhHhhhhccc-cccCCC
Confidence            4665  7777777777777776 577664

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.57  E-value=2.1e-05  Score=35.54  Aligned_cols=16  Identities=50%  Similarity=0.839  Sum_probs=8.0

Q ss_pred             ccccccCHHHHHhHhh
Q psy11068        251 CKLLFSTKSALKRHNK  266 (292)
Q Consensus       251 C~~~f~~~~~l~~H~~  266 (292)
                      |.++|.-++.|.+|.+
T Consensus         6 cersfveksalsrhqr   21 (26)
T d1znfa_           6 CERSFVEKSALSRHQR   21 (26)
T ss_dssp             SCCBCSSHHHHHHHGG
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            5555555555555544

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=3.7e-05  Score=35.85  Aligned_cols=27  Identities=33%  Similarity=0.473  Sum_probs=23.6

Q ss_pred             cccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        243 NFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       243 ~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      ...|..  ||++|.-.+.|++|.. +|++|
T Consensus         2 ~hvc~e--cgkaf~essklkrh~l-vhtge   28 (28)
T d1ubdc2           2 VHVCAE--CGKAFVESSKLKRHQL-VHTGE   28 (28)
T ss_dssp             CEECTT--TCCEESSHHHHHHHGG-GTSCC
T ss_pred             cchHHH--HhHHHHHHHHHHHHhh-cccCC
Confidence            356866  9999999999999998 89886

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=1.5e-05  Score=38.63  Aligned_cols=27  Identities=44%  Similarity=0.928  Sum_probs=17.4

Q ss_pred             CceeCCCCCCCcccCCHHHHHHHH-HHh
Q psy11068        182 APYMCDYKGCGKSFYLMASLKSHQ-RVH  208 (292)
Q Consensus       182 ~~~~C~~~~C~~~f~~~~~l~~H~-~~h  208 (292)
                      +||.|.+++|.+.|.+.+.-..|+ ++|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTH   28 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTH   28 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTT
T ss_pred             CCccccCCChhhhhcchhhhhhhccccc
Confidence            466666666666666666666665 444

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.50  E-value=3.3e-05  Score=37.47  Aligned_cols=27  Identities=22%  Similarity=0.412  Sum_probs=24.6

Q ss_pred             CcccCCCcccccChhHHHHHHHHhcCC
Q psy11068        214 DLVCKGCGKQFKVPCRLREHYKAVHES  240 (292)
Q Consensus       214 ~~~C~~C~~~f~~~~~L~~H~~~~H~~  240 (292)
                      ||.|.+|++.|+.+..|.+|.+..|.+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            799999999999999999998877854

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=6.2e-05  Score=38.70  Aligned_cols=28  Identities=32%  Similarity=0.772  Sum_probs=24.9

Q ss_pred             CCceeCCCCCCCcccCCHHHHHHHHHHh
Q psy11068        181 SAPYMCDYKGCGKSFYLMASLKSHQRVH  208 (292)
Q Consensus       181 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h  208 (292)
                      ++||.|..++|+..|.+...|..|...|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            7889998888999999999999988887

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=6.2e-05  Score=39.22  Aligned_cols=26  Identities=23%  Similarity=0.565  Sum_probs=23.0

Q ss_pred             CCCCcccCCcCCccccccCHHHHHhHhh
Q psy11068        239 ESTKNFKCTYDGCKLLFSTKSALKRHNK  266 (292)
Q Consensus       239 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~  266 (292)
                      +|.+||.|.+  |+|.|..+..+.+|..
T Consensus         1 TGiKPYeC~~--C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNI--CAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSS--SCCEESCHHHHHHHHH
T ss_pred             CCCCceeccc--hhhhhhhHHHHHHhhh
Confidence            4678999987  9999999999999975

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.36  E-value=9e-05  Score=33.97  Aligned_cols=26  Identities=31%  Similarity=0.558  Sum_probs=16.1

Q ss_pred             ccCCCcccccChhHHHHHHHHhcCCCC
Q psy11068        216 VCKGCGKQFKVPCRLREHYKAVHESTK  242 (292)
Q Consensus       216 ~C~~C~~~f~~~~~L~~H~~~~H~~~~  242 (292)
                      +|+.|.+.|.++-.|..|-+ .|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr-~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNR-KHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHH-HHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccc-cccCCC
Confidence            46666666666666666655 566553

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.34  E-value=9.6e-05  Score=33.31  Aligned_cols=24  Identities=29%  Similarity=0.584  Sum_probs=22.2

Q ss_pred             cccCCCcccccChhHHHHHHHHhcC
Q psy11068        215 LVCKGCGKQFKVPCRLREHYKAVHE  239 (292)
Q Consensus       215 ~~C~~C~~~f~~~~~L~~H~~~~H~  239 (292)
                      |+|..|.++|..++.|.+|++ +|.
T Consensus         1 ykcglcersfveksalsrhqr-vhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQR-VHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGG-GTC
T ss_pred             CcccchHHHHHHHHHHHHHHH-hhc
Confidence            789999999999999999988 885

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00011  Score=34.55  Aligned_cols=23  Identities=48%  Similarity=0.980  Sum_probs=15.3

Q ss_pred             cccCCcCCccccccCHHHHHhHhhh
Q psy11068        243 NFKCTYDGCKLLFSTKSALKRHNKS  267 (292)
Q Consensus       243 ~~~C~~~~C~~~f~~~~~l~~H~~~  267 (292)
                      ||.|..  |..+|.++.+|..||++
T Consensus         1 py~C~~--CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTY--CNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSS--SSCEESSHHHHHHHHHS
T ss_pred             Ccccce--eeeeEeeccchhHhhhh
Confidence            566665  66667777777666664

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00013  Score=33.82  Aligned_cols=26  Identities=31%  Similarity=0.620  Sum_probs=24.1

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhhhcC
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKSKHL  270 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H~  270 (292)
                      +||+|..  |.++-...+.|..|+| .|.
T Consensus         2 kp~kck~--cdyaaadsssl~kh~r-ihs   27 (28)
T d2dmda1           2 KPYKCKT--CDYAAADSSSLNKHLR-IHS   27 (28)
T ss_dssp             CSEECSS--SCCEESSHHHHHHHHH-HSC
T ss_pred             CCccccc--ccchhcchhhHhhhhh-ccc
Confidence            7999988  9999999999999999 685

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.22  E-value=9e-05  Score=35.59  Aligned_cols=30  Identities=23%  Similarity=0.555  Sum_probs=27.2

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~  272 (292)
                      +.|.|+.++|+..|+..+.|..|+- .|+||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLc-kHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLS-KHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHH-HHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhh-hhcCC
Confidence            5689998999999999999999998 79886

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00018  Score=33.94  Aligned_cols=26  Identities=38%  Similarity=0.733  Sum_probs=15.0

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhhhc
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKSKH  269 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H  269 (292)
                      +||+|.+  |..--.+.++|..|++..|
T Consensus         1 rPFkC~~--CsFDtkq~SnL~kH~kk~H   26 (29)
T d1x5wa2           1 RPFKCNY--CSFDTKQPSNLSKHMKKFH   26 (29)
T ss_dssp             CSEECSS--SSCEESSHHHHHHHHHHHH
T ss_pred             CCcccce--ecccccCcchHHHHHHHHc
Confidence            4566655  6655556666666665444

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.09  E-value=0.0002  Score=37.08  Aligned_cols=27  Identities=30%  Similarity=0.691  Sum_probs=14.2

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhhhcCC
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLN  271 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~  271 (292)
                      +.|+|.+  |++.|.+..+|--||+ .|..
T Consensus         4 r~~~C~~--C~k~F~s~qALGGH~~-~Hr~   30 (37)
T d1njqa_           4 RSYTCSF--CKREFRSAQALGGHMN-VHRR   30 (37)
T ss_dssp             SSEECTT--TCCEESSHHHHHHHHH-TTCC
T ss_pred             CccCCCC--CCCccCCcccccchHh-hhcc
Confidence            3455555  5555555555555555 3443

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.06  E-value=0.00027  Score=36.60  Aligned_cols=30  Identities=27%  Similarity=0.631  Sum_probs=26.6

Q ss_pred             CCCcccCCCcccccChhHHHHHHHHhcCCCC
Q psy11068        212 PEDLVCKGCGKQFKVPCRLREHYKAVHESTK  242 (292)
Q Consensus       212 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~  242 (292)
                      .+.|.|.+|++.|.+...|--|++ .|..++
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~-~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMN-VHRRDR   32 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHH-TTCCSC
T ss_pred             CCccCCCCCCCccCCcccccchHh-hhcchH
Confidence            357999999999999999999998 897665

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.00022  Score=32.08  Aligned_cols=23  Identities=30%  Similarity=0.618  Sum_probs=17.9

Q ss_pred             cccCCcCCccccccCHHHHHhHhhh
Q psy11068        243 NFKCTYDGCKLLFSTKSALKRHNKS  267 (292)
Q Consensus       243 ~~~C~~~~C~~~f~~~~~l~~H~~~  267 (292)
                      ||+|..  |...|.++..|+.||..
T Consensus         2 pykcss--csqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSS--CSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSS--SCCEESSHHHHHHHHHH
T ss_pred             CCcccH--HHHHHHHHHHHHHHHHh
Confidence            688876  88888888888888753

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.00022  Score=33.45  Aligned_cols=20  Identities=35%  Similarity=0.478  Sum_probs=8.9

Q ss_pred             ccccccchHHHHHhHhhcCC
Q psy11068         99 CMWGFFSKHKLLRHMTSHDE  118 (292)
Q Consensus        99 C~~~f~~~~~l~~H~~~h~~  118 (292)
                      |...|..+-.|+.||..|+|
T Consensus        10 cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3          10 CQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             SCCEESSHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHhheeeeecccC
Confidence            44444444444444444443

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00025  Score=33.34  Aligned_cols=25  Identities=36%  Similarity=0.857  Sum_probs=17.7

Q ss_pred             ccccccCCCCcccccccccchHHHHHhHhhcC
Q psy11068         86 PFKCKLTTANNTPCMWGFFSKHKLLRHMTSHD  117 (292)
Q Consensus        86 ~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~  117 (292)
                      ||.|..       |...|.++.+|..||++..
T Consensus         1 py~C~~-------CnF~FKTKGNLTKHmkSKa   25 (29)
T d1bboa2           1 PYHCTY-------CNFSFKTKGNLTKHMKSKA   25 (29)
T ss_dssp             CEECSS-------SSCEESSHHHHHHHHHSSS
T ss_pred             Ccccce-------eeeeEeeccchhHhhhhhh
Confidence            566766       7777777777777776543

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.0003  Score=33.20  Aligned_cols=27  Identities=30%  Similarity=0.546  Sum_probs=19.5

Q ss_pred             CCcccCCCcccccChhHHHHHHHHhcC
Q psy11068        213 EDLVCKGCGKQFKVPCRLREHYKAVHE  239 (292)
Q Consensus       213 ~~~~C~~C~~~f~~~~~L~~H~~~~H~  239 (292)
                      +||+|..|.......++|..|++..|.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            477777777777777777777776663

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00027  Score=35.52  Aligned_cols=29  Identities=28%  Similarity=0.627  Sum_probs=23.4

Q ss_pred             cccCCcCCccc---cccCHHHHHhHhhhhcCCC
Q psy11068        243 NFKCTYDGCKL---LFSTKSALKRHNKSKHLNM  272 (292)
Q Consensus       243 ~~~C~~~~C~~---~f~~~~~l~~H~~~~H~~~  272 (292)
                      .|.|...+|.+   .|..+..|..||| .|+||
T Consensus         2 ~y~C~W~~C~R~~~pf~a~YkLv~H~R-~HTgE   33 (33)
T d2glia2           2 EFVCHWGGCSRELRPFKAQYMLVVHMR-RHTGE   33 (33)
T ss_dssp             CCCCCBTTCTTTTCCCSSHHHHHHHTH-HHHCC
T ss_pred             CeEEECCCCCCCCCcchhHHHHHHHHh-hcCCC
Confidence            47787777875   4889999999999 79886

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.87  E-value=0.00045  Score=32.41  Aligned_cols=27  Identities=26%  Similarity=0.580  Sum_probs=14.9

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhhhcCC
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLN  271 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~  271 (292)
                      ..|.|..  |...|.++..|+.||- .|+|
T Consensus         3 qvftcs~--cqe~f~rrmelr~hmv-shtg   29 (30)
T d2dlqa3           3 QVFTCSV--CQETFRRRMELRLHMV-SHTG   29 (30)
T ss_dssp             CCEECSS--SCCEESSHHHHHHHHH-HHSS
T ss_pred             ceEEeHH--HHHHHHHHHhheeeee-cccC
Confidence            3455555  5555555555555555 3554

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.82  E-value=0.00043  Score=31.23  Aligned_cols=24  Identities=29%  Similarity=0.496  Sum_probs=16.9

Q ss_pred             cccCCCcccccChhHHHHHHHHhc
Q psy11068        215 LVCKGCGKQFKVPCRLREHYKAVH  238 (292)
Q Consensus       215 ~~C~~C~~~f~~~~~L~~H~~~~H  238 (292)
                      |.|++|-+.|..+.++..|.+.+|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            567777777777777777776555

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00045  Score=35.89  Aligned_cols=24  Identities=21%  Similarity=0.383  Sum_probs=19.2

Q ss_pred             CCCCcccCCCcccccChhHHHHHH
Q psy11068        211 NPEDLVCKGCGKQFKVPCRLREHY  234 (292)
Q Consensus       211 ~~~~~~C~~C~~~f~~~~~L~~H~  234 (292)
                      |-+||.|..|++.|-.+.++.+|.
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhh
Confidence            457888888888888888888884

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.00095  Score=33.46  Aligned_cols=28  Identities=14%  Similarity=0.323  Sum_probs=14.6

Q ss_pred             ccccCCCCcc---cccChHHHHhHHhhccCC
Q psy11068         57 WSCPIVNCNF---TSVNLNTFKIHLLKHFDK   84 (292)
Q Consensus        57 ~~C~~~~C~~---~~~~~~~l~~H~~~h~~~   84 (292)
                      |.|.+..|..   .|.....|..|++.|+||
T Consensus         3 y~C~W~~C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           3 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             eEEECCCCCCCCCcchhHHHHHHHHhhcCCC
Confidence            4555555533   355555555555555543

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0013  Score=30.34  Aligned_cols=24  Identities=21%  Similarity=0.437  Sum_probs=14.0

Q ss_pred             cccCCCcccccChhHHHHHHHHhc
Q psy11068        215 LVCKGCGKQFKVPCRLREHYKAVH  238 (292)
Q Consensus       215 ~~C~~C~~~f~~~~~L~~H~~~~H  238 (292)
                      |+|+.|+-....++.|+.|++..|
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTS
T ss_pred             ccCCcchhheeehhhhhHHhhhcc
Confidence            556666666666666666655444

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.31  E-value=0.0015  Score=29.25  Aligned_cols=22  Identities=27%  Similarity=0.539  Sum_probs=11.8

Q ss_pred             CcccCCCcccccChhHHHHHHH
Q psy11068        214 DLVCKGCGKQFKVPCRLREHYK  235 (292)
Q Consensus       214 ~~~C~~C~~~f~~~~~L~~H~~  235 (292)
                      ||+|.-|...|..+..|..|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555543

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.26  E-value=0.0015  Score=31.20  Aligned_cols=27  Identities=26%  Similarity=0.687  Sum_probs=18.5

Q ss_pred             CceeCCCCCCCcccCCHHHHHHHHHHh
Q psy11068        182 APYMCDYKGCGKSFYLMASLKSHQRVH  208 (292)
Q Consensus       182 ~~~~C~~~~C~~~f~~~~~l~~H~~~h  208 (292)
                      +.|.|.+++|+..|.....|..|+-.|
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckH   28 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKH   28 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHH
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhh
Confidence            346677777777777777777776666

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.22  E-value=0.0021  Score=30.19  Aligned_cols=29  Identities=48%  Similarity=0.870  Sum_probs=24.7

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhhhcC
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKSKHL  270 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H~  270 (292)
                      +.|+|..++|+..|.++..++.|..+.|.
T Consensus         1 knf~cdsd~cdl~fttkanmkkhfnrfhn   29 (31)
T d1tf3a3           1 KNFTCDSDGCDLRFTTKANMKKHFNRFHN   29 (31)
T ss_dssp             CCEECSSSSCCCEESSHHHHHHHHHHHTT
T ss_pred             CCccccCCCcceEEeehHHHHHHHhhhcc
Confidence            35889888999999999999999886663

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0039  Score=29.12  Aligned_cols=24  Identities=33%  Similarity=0.793  Sum_probs=16.5

Q ss_pred             eCCCCCCCcccCCHHHHHHHHHHh
Q psy11068        185 MCDYKGCGKSFYLMASLKSHQRVH  208 (292)
Q Consensus       185 ~C~~~~C~~~f~~~~~l~~H~~~h  208 (292)
                      .|++++||+.|.++..|..|.+..
T Consensus         2 ~cdf~gc~kifsnrqylnhh~kyq   25 (30)
T d2dlka1           2 PCDFPGCGRIFSNRQYLNHHKKYQ   25 (30)
T ss_dssp             ECSSTTTCCEESSHHHHHHHHHHG
T ss_pred             CCCCCCchhhhccHHHHHhHHHHH
Confidence            356667777777777777776654

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0031  Score=29.29  Aligned_cols=24  Identities=33%  Similarity=0.663  Sum_probs=19.2

Q ss_pred             eCCCCCCCcccCCHHHHHHHHHHh
Q psy11068        185 MCDYKGCGKSFYLMASLKSHQRVH  208 (292)
Q Consensus       185 ~C~~~~C~~~f~~~~~l~~H~~~h  208 (292)
                      .|+..+|++.|+..+.++.|+.+|
T Consensus         3 ~CphkgC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGG
T ss_pred             cCCcccHHHHhhchHHHHHHhhcc
Confidence            455567888888888888888877

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0039  Score=29.11  Aligned_cols=25  Identities=36%  Similarity=0.857  Sum_probs=19.3

Q ss_pred             cCCcCCccccccCHHHHHhHhhhhc
Q psy11068        245 KCTYDGCKLLFSTKSALKRHNKSKH  269 (292)
Q Consensus       245 ~C~~~~C~~~f~~~~~l~~H~~~~H  269 (292)
                      .|..++||+.|+++..|.-|.+-.|
T Consensus         2 ~cdf~gc~kifsnrqylnhh~kyqh   26 (30)
T d2dlka1           2 PCDFPGCGRIFSNRQYLNHHKKYQH   26 (30)
T ss_dssp             ECSSTTTCCEESSHHHHHHHHHHGG
T ss_pred             CCCCCCchhhhccHHHHHhHHHHHH
Confidence            3666789999998888888877544

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.82  E-value=0.005  Score=28.14  Aligned_cols=25  Identities=44%  Similarity=0.913  Sum_probs=18.8

Q ss_pred             eeCCCCCCCcccCCHHHHHHHHHHh
Q psy11068        184 YMCDYKGCGKSFYLMASLKSHQRVH  208 (292)
Q Consensus       184 ~~C~~~~C~~~f~~~~~l~~H~~~h  208 (292)
                      |.|.+.+|++.|.....|+.|+-+|
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~h   26 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSH   26 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeecc
Confidence            5666667888888877888777766

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0034  Score=28.96  Aligned_cols=26  Identities=31%  Similarity=0.634  Sum_probs=23.1

Q ss_pred             cccCCcCCccccccCHHHHHhHhhhhcC
Q psy11068        243 NFKCTYDGCKLLFSTKSALKRHNKSKHL  270 (292)
Q Consensus       243 ~~~C~~~~C~~~f~~~~~l~~H~~~~H~  270 (292)
                      .|+|+.  |+....+++.|+.|++..|+
T Consensus         2 k~qcph--c~tiiarksdlrvhlrnlhs   27 (28)
T d2ct1a1           2 KFHCPH--CDTVIARKSDLGVHLRKQHS   27 (28)
T ss_dssp             SEECSS--SSCEESSHHHHHHHHHHTSC
T ss_pred             CccCCc--chhheeehhhhhHHhhhccc
Confidence            489988  99999999999999997763

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.74  E-value=0.0039  Score=28.02  Aligned_cols=24  Identities=29%  Similarity=0.661  Sum_probs=22.0

Q ss_pred             ccCCcCCccccccCHHHHHhHhhhhc
Q psy11068        244 FKCTYDGCKLLFSTKSALKRHNKSKH  269 (292)
Q Consensus       244 ~~C~~~~C~~~f~~~~~l~~H~~~~H  269 (292)
                      |.|+.  |-+.|.++.++..|.+..|
T Consensus         2 ypcp~--cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPF--CFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTT--TCCEESCHHHHHHHHHHHT
T ss_pred             cCCch--hhHHhccccCceEEEEEec
Confidence            78988  9999999999999998766

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0041  Score=28.78  Aligned_cols=16  Identities=38%  Similarity=0.688  Sum_probs=7.3

Q ss_pred             ccccccCHHHHHhHhh
Q psy11068        251 CKLLFSTKSALKRHNK  266 (292)
Q Consensus       251 C~~~f~~~~~l~~H~~  266 (292)
                      |.++.+++..|+.|.|
T Consensus         8 csyscsskaalrvh~r   23 (28)
T d1x5wa1           8 CSYSCSSKAALRIHER   23 (28)
T ss_dssp             SSCEESSHHHHHHHHG
T ss_pred             cccccCcHHHHHHhhc
Confidence            4444444444444444

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.43  E-value=0.0053  Score=28.18  Aligned_cols=22  Identities=27%  Similarity=0.570  Sum_probs=19.1

Q ss_pred             cccCCcCCccccccCHHHHHhHhh
Q psy11068        243 NFKCTYDGCKLLFSTKSALKRHNK  266 (292)
Q Consensus       243 ~~~C~~~~C~~~f~~~~~l~~H~~  266 (292)
                      ||+|..  ||+.+.++.+|..|..
T Consensus         1 pf~c~k--cgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPK--CGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTT--TCCBCSSHHHHHHHHH
T ss_pred             CCcccc--chhhhhhHhHHHHHHH
Confidence            789976  9999999999998865

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.07  E-value=0.0065  Score=27.76  Aligned_cols=26  Identities=27%  Similarity=0.664  Sum_probs=19.6

Q ss_pred             ccCCcCCccccccCHHHHHhHhhhhcC
Q psy11068        244 FKCTYDGCKLLFSTKSALKRHNKSKHL  270 (292)
Q Consensus       244 ~~C~~~~C~~~f~~~~~l~~H~~~~H~  270 (292)
                      |.|-.++|+++|.....|+.|.- .|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf-~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQF-SHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHH-HHH
T ss_pred             eEEEecCchHHHhhccceEEEee-ccc
Confidence            56766778888888888888876 453

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.011  Score=27.32  Aligned_cols=24  Identities=25%  Similarity=0.477  Sum_probs=21.9

Q ss_pred             CcccCCCcccccChhHHHHHHHHhc
Q psy11068        214 DLVCKGCGKQFKVPCRLREHYKAVH  238 (292)
Q Consensus       214 ~~~C~~C~~~f~~~~~L~~H~~~~H  238 (292)
                      |-+|+.|..+.+++..|+.|.| +|
T Consensus         2 pekc~ecsyscsskaalrvh~r-ih   25 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHER-IH   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHG-GG
T ss_pred             CccCcccccccCcHHHHHHhhc-cc
Confidence            5689999999999999999988 77

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.81  E-value=0.0089  Score=27.40  Aligned_cols=22  Identities=41%  Similarity=0.854  Sum_probs=15.4

Q ss_pred             ccccccCCCCcccccccccchHHHHHhHh
Q psy11068         86 PFKCKLTTANNTPCMWGFFSKHKLLRHMT  114 (292)
Q Consensus        86 ~~~C~~~~~~~~~C~~~f~~~~~l~~H~~  114 (292)
                      ||+|..       ||+.+..+.+|..|..
T Consensus         1 pf~c~k-------cgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPK-------CGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTT-------TCCBCSSHHHHHHHHH
T ss_pred             CCcccc-------chhhhhhHhHHHHHHH
Confidence            466666       7777777777777754

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.012  Score=28.85  Aligned_cols=19  Identities=37%  Similarity=0.842  Sum_probs=9.1

Q ss_pred             cccCCCcccccChhHHHHH
Q psy11068        215 LVCKGCGKQFKVPCRLREH  233 (292)
Q Consensus       215 ~~C~~C~~~f~~~~~L~~H  233 (292)
                      |.|..|++.|..+..+.+|
T Consensus         5 fvcskcgktftrrntm~rh   23 (37)
T d1x6ha1           5 FVCSKCGKTFTRRNTMARH   23 (37)
T ss_dssp             EECSSSCCEESCHHHHHHH
T ss_pred             eeecccccchhcchHHHHH
Confidence            4444444444444444444

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.018  Score=26.68  Aligned_cols=24  Identities=33%  Similarity=0.812  Sum_probs=19.6

Q ss_pred             cCCcCCccccccCHHHHHhHhhhhc
Q psy11068        245 KCTYDGCKLLFSTKSALKRHNKSKH  269 (292)
Q Consensus       245 ~C~~~~C~~~f~~~~~l~~H~~~~H  269 (292)
                      .|+..+|.+.|...++++.|+- .|
T Consensus         3 ~CphkgC~K~Frd~saMRKHlh-tH   26 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLH-TH   26 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHG-GG
T ss_pred             cCCcccHHHHhhchHHHHHHhh-cc
Confidence            4666789999999999999987 56

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.014  Score=31.26  Aligned_cols=26  Identities=42%  Similarity=0.613  Sum_probs=20.6

Q ss_pred             CCcccCCCcccccChhHHHHHHHHhcC
Q psy11068        213 EDLVCKGCGKQFKVPCRLREHYKAVHE  239 (292)
Q Consensus       213 ~~~~C~~C~~~f~~~~~L~~H~~~~H~  239 (292)
                      ..|.|..|+|.|.....|+.|.. .|.
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEA-QHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEA-QHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHH-HHT
T ss_pred             ceeeccccccccCCHHHHhHhHH-hcC
Confidence            35788888888888888888866 664

>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 292, ZNF292
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.57  E-value=0.043  Score=30.01  Aligned_cols=34  Identities=21%  Similarity=0.440  Sum_probs=26.4

Q ss_pred             CCCcccCCcCCccccccCHHHHHhHhhhhcCCCC
Q psy11068        240 STKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMR  273 (292)
Q Consensus       240 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~  273 (292)
                      .-+||.|-..+|-.+|.-..+|.-|.+.+|...-
T Consensus        17 pyrpyrcvhqgc~aaftiq~nlilhy~avh~s~l   50 (61)
T d1x3ca1          17 PYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDL   50 (61)
T ss_dssp             SSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCC
T ss_pred             CCCceeeeccchhhhhhhhhhHHHHHHHHhhhcC
Confidence            4578888877888888888888888887776543

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.48  E-value=0.026  Score=27.65  Aligned_cols=24  Identities=25%  Similarity=0.683  Sum_probs=21.0

Q ss_pred             CcccCCcCCccccccCHHHHHhHhhh
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNKS  267 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~~  267 (292)
                      ..|.|..  |++.|.++..+.+|-..
T Consensus         3 ~afvcsk--cgktftrrntm~rha~n   26 (37)
T d1x6ha1           3 AAFVCSK--CGKTFTRRNTMARHADN   26 (37)
T ss_dssp             CCEECSS--SCCEESCHHHHHHHHHH
T ss_pred             ceeeecc--cccchhcchHHHHHhhh
Confidence            4589987  99999999999999763

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.28  E-value=0.031  Score=27.51  Aligned_cols=28  Identities=21%  Similarity=0.507  Sum_probs=19.1

Q ss_pred             CCCcccCCCcccccChhHHHHHHHHhcC
Q psy11068        212 PEDLVCKGCGKQFKVPCRLREHYKAVHE  239 (292)
Q Consensus       212 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~  239 (292)
                      +..|.|.+|.+.+..-+++.+|.-+.|.
T Consensus         6 ~~~yRC~~C~r~YTHISNFCRHyvtSHk   33 (37)
T d2drpa1           6 EHTYRCKVCSRVYTHISNFCRHYVTSHK   33 (37)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             CcEEEeehhhHHHHHHHHHHHHHHhhcc
Confidence            3457777777777777777777666663

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.39  E-value=0.057  Score=28.86  Aligned_cols=25  Identities=32%  Similarity=0.611  Sum_probs=22.5

Q ss_pred             CceeCCCCCCCcccCCHHHHHHHHHHh
Q psy11068        182 APYMCDYKGCGKSFYLMASLKSHQRVH  208 (292)
Q Consensus       182 ~~~~C~~~~C~~~f~~~~~l~~H~~~h  208 (292)
                      -.|.|..  |++.|.....|+.|...|
T Consensus         5 ~l~pCG~--CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           5 GILPCGL--CGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCCTT--TCCCCSCHHHHHHHHHHH
T ss_pred             ceeeccc--cccccCCHHHHhHhHHhc
Confidence            4588988  999999999999999988

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=91.53  E-value=0.08  Score=24.61  Aligned_cols=20  Identities=40%  Similarity=0.798  Sum_probs=8.2

Q ss_pred             eCCCCCCCcccCCHHHHHHH
Q psy11068        185 MCDYKGCGKSFYLMASLKSH  204 (292)
Q Consensus       185 ~C~~~~C~~~f~~~~~l~~H  204 (292)
                      .|+..+|+..|.++..++.|
T Consensus         4 ~cdsd~cdl~fttkanmkkh   23 (31)
T d1tf3a3           4 TCDSDGCDLRFTTKANMKKH   23 (31)
T ss_dssp             ECSSSSCCCEESSHHHHHHH
T ss_pred             cccCCCcceEEeehHHHHHH
Confidence            33333344444444444444

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.14  E-value=0.14  Score=24.78  Aligned_cols=23  Identities=35%  Similarity=0.701  Sum_probs=16.6

Q ss_pred             CcccCCcCCccccccCHHHHHhHhh
Q psy11068        242 KNFKCTYDGCKLLFSTKSALKRHNK  266 (292)
Q Consensus       242 ~~~~C~~~~C~~~f~~~~~l~~H~~  266 (292)
                      ..|.|.-  ||-+|++.+.|..|+.
T Consensus         7 arf~c~p--cgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLP--CGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTT--TCCBCSCHHHHHHHTT
T ss_pred             cceeccc--cceeecChhHHHhhhh
Confidence            4577766  7877887777777764

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.08  E-value=0.11  Score=25.14  Aligned_cols=21  Identities=33%  Similarity=0.781  Sum_probs=14.1

Q ss_pred             CcccCCCcccccChhHHHHHH
Q psy11068        214 DLVCKGCGKQFKVPCRLREHY  234 (292)
Q Consensus       214 ~~~C~~C~~~f~~~~~L~~H~  234 (292)
                      .|.|.-||-.|++.+.|..|+
T Consensus         8 rf~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHT
T ss_pred             ceeccccceeecChhHHHhhh
Confidence            466777777777777776663

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.75  E-value=0.099  Score=30.90  Aligned_cols=23  Identities=30%  Similarity=0.548  Sum_probs=15.7

Q ss_pred             cccCCcCCccccccCHHHHHhHhhh
Q psy11068        243 NFKCTYDGCKLLFSTKSALKRHNKS  267 (292)
Q Consensus       243 ~~~C~~~~C~~~f~~~~~l~~H~~~  267 (292)
                      .|-|..  |++.|.+...|..|+++
T Consensus        15 qfYCv~--C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          15 LHRCLA--CARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             CSEETT--TTEECSSHHHHHHHTTC
T ss_pred             EEeccc--ccCccCCHHHHHHHHcc
Confidence            366766  77777777777777664

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=87.20  E-value=0.29  Score=25.95  Aligned_cols=27  Identities=22%  Similarity=0.385  Sum_probs=16.5

Q ss_pred             CCCcccCCCcccccChhHHHHHHHHhc
Q psy11068        212 PEDLVCKGCGKQFKVPCRLREHYKAVH  238 (292)
Q Consensus       212 ~~~~~C~~C~~~f~~~~~L~~H~~~~H  238 (292)
                      +.|-.|+.|+.......+|++|+...|
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel~h   48 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            345566666666666666666665445

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.89  E-value=0.12  Score=30.54  Aligned_cols=16  Identities=25%  Similarity=0.488  Sum_probs=9.5

Q ss_pred             ccccccchHHHHHhHh
Q psy11068         99 CMWGFFSKHKLLRHMT  114 (292)
Q Consensus        99 C~~~f~~~~~l~~H~~  114 (292)
                      |++.|.+...|..|++
T Consensus        21 C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          21 CARYFIDSTNLKTHFR   36 (67)
T ss_dssp             TTEECSSHHHHHHHTT
T ss_pred             ccCccCCHHHHHHHHc
Confidence            6666666666666654

>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.68  E-value=0.38  Score=23.18  Aligned_cols=25  Identities=36%  Similarity=0.846  Sum_probs=20.0

Q ss_pred             CCcCCccccccCHHHHHhHhhhhcC
Q psy11068        246 CTYDGCKLLFSTKSALKRHNKSKHL  270 (292)
Q Consensus       246 C~~~~C~~~f~~~~~l~~H~~~~H~  270 (292)
                      |-+.+|+.-|.+...|..|+..-|.
T Consensus         4 ChW~~C~~eFdtQd~LV~HinndHI   28 (32)
T d2glia1           4 CRWDGCSQEFDSQEQLVHHINSEHI   28 (32)
T ss_dssp             CCBTTCCCBCSCHHHHHHHHHHHTS
T ss_pred             ccccccccccCCHHHHHHHcccccc
Confidence            5556799999999999999887664

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=83.55  E-value=0.47  Score=25.11  Aligned_cols=29  Identities=24%  Similarity=0.529  Sum_probs=25.5

Q ss_pred             CCCcccCCcCCccccccCHHHHHhHhhhhcC
Q psy11068        240 STKNFKCTYDGCKLLFSTKSALKRHNKSKHL  270 (292)
Q Consensus       240 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~  270 (292)
                      .+.|-.|++  |+....+..+|++|+.-.|.
T Consensus        21 s~qpatcpi--c~avirqsrnlrrhlel~hf   49 (54)
T d1yuja_          21 SEQPATCPI--CYAVIRQSRNLRRHLELRHF   49 (54)
T ss_dssp             TSCCEECTT--TCCEESSHHHHHHHHHHHTS
T ss_pred             ccCCCCCch--HHHHHHHHHHHHHHHHHHhh
Confidence            567899998  99999999999999986663

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.98  E-value=0.62  Score=21.52  Aligned_cols=14  Identities=43%  Similarity=0.840  Sum_probs=5.4

Q ss_pred             CCcccCCHHHHHHH
Q psy11068        191 CGKSFYLMASLKSH  204 (292)
Q Consensus       191 C~~~f~~~~~l~~H  204 (292)
                      ||+...+...++-|
T Consensus         8 cgkqlks~~gmkyh   21 (30)
T d2ctda2           8 CGKQLRSLAGMKYH   21 (30)
T ss_dssp             SCCCCSSHHHHHHH
T ss_pred             HHHHHhhccCceEE
Confidence            33333333333333

>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.90  E-value=0.57  Score=22.52  Aligned_cols=23  Identities=13%  Similarity=0.219  Sum_probs=17.4

Q ss_pred             cccCCCCcccccChHHHHhHHhh
Q psy11068         58 SCPIVNCNFTSVNLNTFKIHLLK   80 (292)
Q Consensus        58 ~C~~~~C~~~~~~~~~l~~H~~~   80 (292)
                      .|.+..|+..|.+...|..|+..
T Consensus         3 nChW~~C~~eFdtQd~LV~Hinn   25 (32)
T d2glia1           3 DCRWDGCSQEFDSQEQLVHHINS   25 (32)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHH
T ss_pred             cccccccccccCCHHHHHHHccc
Confidence            36666788888888888888763

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.81  E-value=0.66  Score=21.41  Aligned_cols=24  Identities=25%  Similarity=0.557  Sum_probs=13.9

Q ss_pred             ccCCcCCccccccCHHHHHhHhhhhc
Q psy11068        244 FKCTYDGCKLLFSTKSALKRHNKSKH  269 (292)
Q Consensus       244 ~~C~~~~C~~~f~~~~~l~~H~~~~H  269 (292)
                      |.|..  ||+...+..-++.|+-..|
T Consensus         3 ftc~h--cgkqlks~~gmkyhvmadh   26 (30)
T d2ctda2           3 FTCHH--CGKQLRSLAGMKYHVMANH   26 (30)
T ss_dssp             CCCSS--SCCCCSSHHHHHHHHHHHT
T ss_pred             eechh--HHHHHhhccCceEEEeecc
Confidence            55655  6666666666666654334

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=81.49  E-value=0.58  Score=22.81  Aligned_cols=30  Identities=20%  Similarity=0.552  Sum_probs=25.6

Q ss_pred             CCCcccCCcCCccccccCHHHHHhHhhhhcCC
Q psy11068        240 STKNFKCTYDGCKLLFSTKSALKRHNKSKHLN  271 (292)
Q Consensus       240 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~  271 (292)
                      ++..|.|.+  |.+.+..-+++-+|.-+.|..
T Consensus         5 g~~~yRC~~--C~r~YTHISNFCRHyvtSHk~   34 (37)
T d2drpa1           5 GEHTYRCKV--CSRVYTHISNFCRHYVTSHKR   34 (37)
T ss_dssp             ETTEEECTT--TCCEESSHHHHHHHHHHHSSS
T ss_pred             cCcEEEeeh--hhHHHHHHHHHHHHHHhhccc
Confidence            456799988  999999999999998876743