Psyllid ID: psy11173

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Protein Sequence
MRERREEEEEEEEEEKTHTIWPGHNTCCIGKESMGKVYEDEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANSCNVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEALWGYADMG
Secondary Structure (PSIPRED)
cccccccccHHHHHHHccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccEEEEEEcccccccccccHHHHHcccccccHHHHHHHHHHHcccccEEHHHHHHHHHHHccccHHHHHHHHHHHHcccEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcHHEEcccccccccEEEEccHHHHHHHccccccccccccEccccEEEEcccccccccccEEEEEEEEEEccccccccHHHHHHHcHHHHHHHHHHHHHHcccccEEEccHHHHHHHHHHccHHHHHHHHHHHHcccEEEcccccccEccccccHHHcccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHcccc
Coil and Loop (DISEMBL)
mrerreeeeeeeeeekthtiwpghntccigkesmgkvyEDEIEFaninggkwtqgwnigldlahetdpenlLRVFVvphshndpgwkqtFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGqleivtggwvmtdeanscnvsdnsgstdvlthmmpfykeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeegeeeeeeeeeeEEEEEEALWGYADMG
Flexible Loop (DISEMBL)
mrerreeeeeeeeeekthtiwpghntcCIGKESMGKVYEDEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANScnvsdnsgstdvLTHMMPFYKeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeegeeeeeeeeeeeeeeeealwgyadmg
Low Complexity Region (SEG)
MrerreeeeeeeeeeKTHTIWPGHNTCCIGKESMGKVYEDEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANSCNVSDNSGSTDVLTHMMPFYKeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeegeeeeeeeeeeeeeeeeALWGYADMG
Disordered region (IsUnstruct)
******************TIWPGHNTCCIGKESMGKVYEDEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEAN*********************************************************************************************************************
Disordered Region (DISOPRED)
************************NTCCIGKESMGKVYEDEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANSCNVSDNSGSTDVLT***********************************************************************************************WGYADM*
Disordered Region (DISEMBL)
*******************IWPGHNTCCIGKESMGKVYEDEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANSCNVSDNSGSTDVLTHMMPFY************************************************************************************************
Disordered Region (DISPRO)
***********EEEEKTHTIWPGHNTCCIGKESMGKVYEDEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANSCNVSDNSGSTDVLTHMMPFYKE**********************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRERREEEEEEEEEEKTHTIWPGHNTCCIGKESMGKVYEDEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANSCNVSDNSGSTDVLTHMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxWGYADMG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	280	2.2.26 [Sep-21-2011]
P49641	1150	Alpha-mannosidase 2x OS=H	yes	N/A	0.435	0.106	0.540	1e-34
Q24451	1108	Alpha-mannosidase 2 OS=Dr	yes	N/A	0.442	0.111	0.528	5e-33
Q8BRK9	1152	Alpha-mannosidase 2x OS=M	yes	N/A	0.435	0.105	0.524	1e-32
Q16706	1144	Alpha-mannosidase 2 OS=Ho	no	N/A	0.432	0.105	0.537	5e-32
P28494	489	Alpha-mannosidase 2 (Frag	no	N/A	0.439	0.251	0.522	8e-32
P27046	1150	Alpha-mannosidase 2 OS=Mu	no	N/A	0.432	0.105	0.522	3e-31
O09159	1013	Lysosomal alpha-mannosida	no	N/A	0.357	0.098	0.423	6e-20
Q29451	999	Lysosomal alpha-mannosida	no	N/A	0.389	0.109	0.372	7e-19
O00754	1011	Lysosomal alpha-mannosida	no	N/A	0.364	0.100	0.389	7e-18
Q60HE9	1012	Lysosomal alpha-mannosida	N/A	N/A	0.364	0.100	0.389	7e-18

>sp|P49641|MA2A2_HUMAN Alpha-mannosidase 2x OS=Homo sapiens GN=MAN2A2 PE=2 SV=3

 Score =  147 bits (370), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 67/124 (54%), Positives = 92/124 (74%), Gaps = 2/124 (1%)

Query: 41  EIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTKS 100
           E+ F N++GG W QG++I  D  H+ D E+L +VFVVPHSHNDPGW +TF+ Y+   T+ 
Sbjct: 137 ELPFDNVDGGVWRQGFDISYD-PHDWDAEDL-QVFVVPHSHNDPGWIKTFDKYYTEQTQH 194

Query: 101 ILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTD 160
           IL++MV+KL E+ +R+F+WAE+S+ + WW  I+   +  VR LV +GQLEI TGGWVM D
Sbjct: 195 ILNSMVSKLQEDPRRRFLWAEVSFFAKWWDNINVQKRAAVRRLVGNGQLEIATGGWVMPD 254

Query: 161 EANS 164
           EANS
Sbjct: 255 EANS 258

Catalyzes the first committed step in the biosynthesis of complex N-glycans. It controls conversion of high mannose to complex N-glycans; the final hydrolytic step in the N-glycan maturation pathway.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 1EC: 4

>sp|Q24451|MAN2_DROME Alpha-mannosidase 2 OS=Drosophila melanogaster GN=alpha-Man-II PE=1 SV=2

 Score =  141 bits (355), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 66/125 (52%), Positives = 88/125 (70%), Gaps = 1/125 (0%)

Query: 40  DEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTK 99
           D + F +I+GG W QGWNI  D   + +  + L+VFVVPHSHNDPGW QTFE Y+ H TK
Sbjct: 113 DRMSFKDIDGGVWKQGWNIKYD-PLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTK 171

Query: 100 SILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMT 159
            IL   +  L +N + KFIWAE+SY + ++  + E+ K +++ +VK+GQLE VTGGWVM 
Sbjct: 172 HILSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMP 231

Query: 160 DEANS 164
           DEANS
Sbjct: 232 DEANS 236

Catalyzes the first committed step in the biosynthesis of complex N-glycans. It controls conversion of high mannose to complex N-glycans; the final hydrolytic step in the N-glycan maturation pathway.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 4

>sp|Q8BRK9|MA2A2_MOUSE Alpha-mannosidase 2x OS=Mus musculus GN=Man2a2 PE=2 SV=2

 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/124 (52%), Positives = 90/124 (72%), Gaps = 2/124 (1%)

Query: 41  EIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTKS 100
           ++ F N+ GG W QG++I     ++ D E+L +VFVVPHSHNDPGW +TF+ Y+   T+ 
Sbjct: 137 DLPFDNVEGGVWRQGFDISYS-PNDWDTEDL-QVFVVPHSHNDPGWIKTFDKYYTEQTQH 194

Query: 101 ILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTD 160
           IL++MV+KL E+ +R+F+WAE+S+ + WW  IS   +  VR LV +GQLEI TGGWVM D
Sbjct: 195 ILNSMVSKLQEDPRRRFLWAEVSFFAKWWDNISAQKRAAVRRLVGNGQLEIATGGWVMPD 254

Query: 161 EANS 164
           EANS
Sbjct: 255 EANS 258

Catalyzes the first committed step in the biosynthesis of complex N-glycans. It controls conversion of high mannose to complex N-glycans; the final hydrolytic step in the N-glycan maturation pathway.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 4

>sp|Q16706|MA2A1_HUMAN Alpha-mannosidase 2 OS=Homo sapiens GN=MAN2A1 PE=1 SV=2

 Score =  138 bits (347), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 72/134 (53%), Positives = 89/134 (66%), Gaps = 13/134 (9%)

Query: 34  MGKVYEDEIEFANINGGKWTQGWNIGLDLAHE-----TDPENLLRVFVVPHSHNDPGWKQ 88
           M  VY   I F N +GG W QG+    D+ +E     T+P   L+VFVVPHSHNDPGW +
Sbjct: 131 MLDVYS-LISFDNPDGGVWKQGF----DITYESNEWDTEP---LQVFVVPHSHNDPGWLK 182

Query: 89  TFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQ 148
           TF  YF   T+ I + MV KL E+ +RKFIW+E+SYLS WW  I    KD V+ L+++GQ
Sbjct: 183 TFNDYFRDKTQYIFNNMVLKLKEDSRRKFIWSEISYLSKWWDIIDIQKKDAVKSLIENGQ 242

Query: 149 LEIVTGGWVMTDEA 162
           LEIVTGGWVM DEA
Sbjct: 243 LEIVTGGWVMPDEA 256

Catalyzes the first committed step in the biosynthesis of complex N-glycans. It controls conversion of high mannose to complex N-glycans; the final hydrolytic step in the N-glycan maturation pathway.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 4

>sp|P28494|MA2A1_RAT Alpha-mannosidase 2 (Fragment) OS=Rattus norvegicus GN=Man2a1 PE=1 SV=1

 Score =  137 bits (345), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 71/136 (52%), Positives = 88/136 (64%), Gaps = 13/136 (9%)

Query: 34  MGKVYEDEIEFANINGGKWTQGWNIGLDLAHETD-----PENLLRVFVVPHSHNDPGWKQ 88
           M  VY D I F N +GG W QG     D+ +E D     P   L+VFVVPHSHNDPGW +
Sbjct: 97  MLDVY-DLIPFDNPDGGVWKQG----FDIKYEADEWDREP---LQVFVVPHSHNDPGWLK 148

Query: 89  TFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQ 148
           TF  YF   T+ I + MV KL E+  RKFIW+E+SYL+ WW  I    K+ V+ L+++GQ
Sbjct: 149 TFNDYFRDKTQYIFNNMVLKLKEDSSRKFIWSEISYLAKWWDIIDNPKKEAVKSLLQNGQ 208

Query: 149 LEIVTGGWVMTDEANS 164
           LEIVTGGWVM DEA +
Sbjct: 209 LEIVTGGWVMADEATT 224

Catalyzes the first committed step in the biosynthesis of complex N-glycans. It controls conversion of high mannose to complex N-glycans; the final hydrolytic step in the N-glycan maturation pathway.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 4

>sp|P27046|MA2A1_MOUSE Alpha-mannosidase 2 OS=Mus musculus GN=Man2a1 PE=1 SV=2

 Score =  135 bits (340), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/134 (52%), Positives = 88/134 (65%), Gaps = 13/134 (9%)

Query: 34  MGKVYEDEIEFANINGGKWTQGWNIGLDLAHETD-----PENLLRVFVVPHSHNDPGWKQ 88
           M  VY D I F N +GG W QG+    D+ +E D     P   L+VFVVPHSHNDPGW +
Sbjct: 130 MLDVY-DLIPFDNPDGGVWKQGF----DIKYEADEWDHEP---LQVFVVPHSHNDPGWLK 181

Query: 89  TFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQ 148
           TF  YF   T+ I + MV KL E+  RKF+W+E+SYL+ WW  I    K+ V+ L+++GQ
Sbjct: 182 TFNDYFRDKTQYIFNNMVLKLKEDSSRKFMWSEISYLAKWWDIIDIPKKEAVKSLLQNGQ 241

Query: 149 LEIVTGGWVMTDEA 162
           LEIVTGGWVM DEA
Sbjct: 242 LEIVTGGWVMPDEA 255

Catalyzes the first committed step in the biosynthesis of complex N-glycans. It controls conversion of high mannose to complex N-glycans; the final hydrolytic step in the N-glycan maturation pathway.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 4

>sp|O09159|MA2B1_MOUSE Lysosomal alpha-mannosidase OS=Mus musculus GN=Man2b1 PE=2 SV=4

 Score = 98.2 bits (243), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 69/111 (62%), Gaps = 11/111 (9%)

Query: 63  AHETDPEN---LLRVFVVPHSHNDPGWKQTFESYFV--------HSTKSILDTMVTKLLE 111
            ++T P     +L V ++PH+H+D GW +T + Y+          S + ILD++V+ LLE
Sbjct: 51  GYKTCPPTKPGMLNVHLLPHTHDDVGWLKTVDQYYYGILSDVQHASVQYILDSVVSSLLE 110

Query: 112 NEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEA 162
              R+FI+ EM++ S WWK  +  T+D VR LV+ G+LE V GGWVM DEA
Sbjct: 111 KPTRRFIYVEMAFFSRWWKQQTSATQDAVRNLVRQGRLEFVNGGWVMNDEA 161

Necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 4

>sp|Q29451|MA2B1_BOVIN Lysosomal alpha-mannosidase OS=Bos taurus GN=MAN2B1 PE=1 SV=3

 Score = 94.7 bits (234), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 68/118 (57%), Gaps = 9/118 (7%)

Query: 55  GWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFV--------HSTKSILDTMV 106
            W  G     +  P+ +L V +VPH+H+D GW +T + YF            + ILD+++
Sbjct: 48  AWAAGYKTCPKVKPD-MLNVHLVPHTHDDVGWLKTVDQYFYGIYNNIQPAGVQYILDSVI 106

Query: 107 TKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANS 164
           + LL N  R+FI+ E+++ S WW+  +  T+  VR LV+ G+LE   GGWVM DEA +
Sbjct: 107 SSLLANPTRRFIYVEIAFFSRWWRQQTNATQKIVRELVRQGRLEFANGGWVMNDEATT 164

Necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 4

>sp|O00754|MA2B1_HUMAN Lysosomal alpha-mannosidase OS=Homo sapiens GN=MAN2B1 PE=1 SV=3

 Score = 91.3 bits (225), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 70/113 (61%), Gaps = 11/113 (9%)

Query: 63  AHETDP---ENLLRVFVVPHSHNDPGWKQTFESYFV-------HS-TKSILDTMVTKLLE 111
            +ET P    N+L V ++PH+H+D GW +T + YF        H+  + ILD++++ LL 
Sbjct: 51  GYETCPTVQPNMLNVHLLPHTHDDVGWLKTVDQYFYGIKNDIQHAGVQYILDSVISALLA 110

Query: 112 NEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANS 164
           +  R+FI+ E+++ S WW   +  T++ VR LV+ G+LE   GGWVM DEA +
Sbjct: 111 DPTRRFIYVEIAFFSRWWHQQTNATQEVVRDLVRQGRLEFANGGWVMNDEAAT 163

Necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. Cleaves all known types of alpha-mannosidic linkages.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 4

>sp|Q60HE9|MA2B1_MACFA Lysosomal alpha-mannosidase OS=Macaca fascicularis GN=MAN2B1 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 69/113 (61%), Gaps = 11/113 (9%)

Query: 63  AHETDP---ENLLRVFVVPHSHNDPGWKQTFESYFV-------HS-TKSILDTMVTKLLE 111
            +ET P    N+L V +VPH+H+D GW +T + YF        H+  + ILD++++ LL 
Sbjct: 52  GYETCPTVQPNILNVHLVPHTHDDVGWLKTVDQYFYGIKNDIQHAGVQYILDSVISALLA 111

Query: 112 NEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANS 164
           +  R+FI+ E+++ S WW   +   ++ VR LV+ G+LE   GGWVM DEA +
Sbjct: 112 DPTRRFIYVEIAFFSRWWHQQTNAMREVVRDLVRQGRLEFANGGWVMNDEAAT 164

Necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover.

Macaca fascicularis (taxid: 9541)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
328720998	1112	PREDICTED: alpha-mannosidase 2-like [Acy	0.442	0.111	0.632	1e-40
307176273	1134	Alpha-mannosidase 2 [Camponotus floridan	0.439	0.108	0.580	2e-34
307192910	1130	Alpha-mannosidase 2 [Harpegnathos saltat	0.439	0.108	0.572	9e-34
242019146	1057	alpha-mannosidase, putative [Pediculus h	0.460	0.122	0.549	9e-34
332029722	1013	Alpha-mannosidase 2 [Acromyrmex echinati	0.439	0.121	0.564	1e-33
390335547	432	PREDICTED: alpha-mannosidase 2-like, par	0.457	0.296	0.557	1e-33
241998292	1029	alpha-mannosidase II, putative [Ixodes s	0.510	0.138	0.470	2e-33
320168525	1249	mannosidase 2 [Capsaspora owczarzaki ATC	0.446	0.100	0.543	2e-33
383854239	1134	PREDICTED: alpha-mannosidase 2-like [Meg	0.439	0.108	0.556	2e-33
357622223	1116	putative mannosidase alpha class 2a [Dan	0.542	0.136	0.490	3e-33

>gi|328720998|ref|XP_001946979.2| PREDICTED: alpha-mannosidase 2-like [Acyrthosiphon pisum]

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/125 (63%), Positives = 96/125 (76%), Gaps = 1/125 (0%)

Query: 40  DEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTK 99
           D+++F NI+GG W QGW++ +      +  N LRVFVVPHSHNDPGWK+TFE Y+   TK
Sbjct: 108 DKLQFDNIDGGAWKQGWDVKIT-KRRWNANNKLRVFVVPHSHNDPGWKRTFEEYYRSDTK 166

Query: 100 SILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMT 159
           +ILD MV KL E+ +RKFIWAEMSYLSLWW  I   TK KV+ L+ +GQLEIVTGGWVMT
Sbjct: 167 NILDNMVIKLSEDRRRKFIWAEMSYLSLWWNDIDHSTKTKVKKLIDNGQLEIVTGGWVMT 226

Query: 160 DEANS 164
           DEAN+
Sbjct: 227 DEANT 231

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176273|gb|EFN65904.1| Alpha-mannosidase 2 [Camponotus floridanus]

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/124 (58%), Positives = 91/124 (73%), Gaps = 1/124 (0%)

Query: 41  EIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTKS 100
           ++EF N +GG W QGWNI  D   +  P   L+VFVVPHSHNDPGW  TFE Y++  T+S
Sbjct: 127 QLEFDNPDGGVWKQGWNIIYD-EKQWHPNRKLKVFVVPHSHNDPGWLNTFEKYYIFQTRS 185

Query: 101 ILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTD 160
           IL+ MVTKL E+++RKFIWAE+S+  LWW   S+  +D+VR LV  GQLEIV+GGWVM D
Sbjct: 186 ILNNMVTKLSEDKRRKFIWAEISFFKLWWDDQSKVIRDEVRRLVHDGQLEIVSGGWVMPD 245

Query: 161 EANS 164
           E+ S
Sbjct: 246 ESVS 249

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192910|gb|EFN75938.1| Alpha-mannosidase 2 [Harpegnathos saltator]

 Score =  149 bits (377), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 71/124 (57%), Positives = 89/124 (71%), Gaps = 1/124 (0%)

Query: 41  EIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTKS 100
           ++EF N +GG W QGWNI  D   +  P   L+VFVVPHSHNDPGW  TFE Y+   T+S
Sbjct: 122 QLEFDNPDGGVWKQGWNIIYD-EKQWHPNRKLKVFVVPHSHNDPGWLNTFEKYYTFQTRS 180

Query: 101 ILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTD 160
           IL+ MVTKL E+ +RKFIWAE+S+  LWW   S+  +D+VR L+  GQLEIV+GGWVM D
Sbjct: 181 ILNNMVTKLGEDRRRKFIWAEISFFKLWWDDQSKTIRDEVRRLIHDGQLEIVSGGWVMPD 240

Query: 161 EANS 164
           E+ S
Sbjct: 241 ESVS 244

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019146|ref|XP_002430026.1| alpha-mannosidase, putative [Pediculus humanus corporis] gi|212515088|gb|EEB17288.1| alpha-mannosidase, putative [Pediculus humanus corporis]

 Score =  149 bits (377), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 99/131 (75%), Gaps = 2/131 (1%)

Query: 34  MGKVYEDEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESY 93
           M  +Y + ++F NI+GG W QGWNI +D  +  +  N L+VF+VPHSHNDPGW +TFE Y
Sbjct: 93  MLDIY-NVLKFDNIDGGVWKQGWNIEID-PNRWNSNNKLKVFIVPHSHNDPGWLKTFEDY 150

Query: 94  FVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVT 153
           +   T++IL+ M+ KL  + ++KFIWAE+SYLS WW  +SED ++KV+ +VK+ QLEIVT
Sbjct: 151 YKTETRNILNNMLKKLTADLEKKFIWAEISYLSRWWDELSEDDQEKVKRVVKNKQLEIVT 210

Query: 154 GGWVMTDEANS 164
           GGWVM DEAN+
Sbjct: 211 GGWVMNDEANT 221

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029722|gb|EGI69601.1| Alpha-mannosidase 2 [Acromyrmex echinatior]

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/124 (56%), Positives = 90/124 (72%), Gaps = 1/124 (0%)

Query: 41  EIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTKS 100
           ++EF N +GG W QGWNI  D   +  P   L++FVVPHSHNDPGW  TFE Y++  T+S
Sbjct: 7   QLEFDNPDGGVWKQGWNIMYD-EKQWHPNRKLKIFVVPHSHNDPGWLNTFEKYYMFQTRS 65

Query: 101 ILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTD 160
           IL+ MV KL E+ +RKFIWAE+S+  LWW   S++ KD+VR L+  GQLEIV+GGWVM D
Sbjct: 66  ILNNMVIKLSEDRRRKFIWAEISFFKLWWDDQSKEIKDEVRRLIHDGQLEIVSGGWVMPD 125

Query: 161 EANS 164
           E+ S
Sbjct: 126 ESVS 129

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390335547|ref|XP_794076.3| PREDICTED: alpha-mannosidase 2-like, partial [Strongylocentrotus purpuratus]

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 73/131 (55%), Positives = 94/131 (71%), Gaps = 3/131 (2%)

Query: 34  MGKVYEDEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESY 93
           M +VYE ++ F N NGG W QG++I  D  H    E+ L++FVVPHSHNDPGW +TF  Y
Sbjct: 164 MMQVYE-KLRFDNANGGVWKQGFDISYD--HNKWNEDPLKIFVVPHSHNDPGWIKTFTKY 220

Query: 94  FVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVT 153
           F   T  ILDTMV K+ E+ K  FIWAE+SYLS+WW+    + +  V+ LV+SG+LEIVT
Sbjct: 221 FTDQTSKILDTMVKKMEEHPKMTFIWAEISYLSMWWEKADNNKRQIVKKLVQSGRLEIVT 280

Query: 154 GGWVMTDEANS 164
           GGWVM+DEAN+
Sbjct: 281 GGWVMSDEANT 291

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|241998292|ref|XP_002433789.1| alpha-mannosidase II, putative [Ixodes scapularis] gi|215495548|gb|EEC05189.1| alpha-mannosidase II, putative [Ixodes scapularis]

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/170 (47%), Positives = 101/170 (59%), Gaps = 27/170 (15%)

Query: 16  KTHTIWPGHNT-----------CCIGK-------ESMGKVYEDEIEFANINGGKWTQGWN 57
           K H +W  HN            C  G         +M  +YE ++ F N NGG W QGW 
Sbjct: 60  KPHLLW-LHNATRQPVPTQPGDCAFGMLPPASTDYNMYDLYE-KLAFDNPNGGVWKQGW- 116

Query: 58  IGLDLAHETD---PENLLRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEK 114
              DL ++ D    +  LRVFVVPHSHNDPGW +TF+ Y+   TK ILD M  KL  N  
Sbjct: 117 ---DLQYQPDQWSRDRKLRVFVVPHSHNDPGWLKTFDKYYHDQTKKILDNMAVKLGVNAT 173

Query: 115 RKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANS 164
           R+FIWAE+SY S+W+  +SE+ K ++R  +K GQLEIVTGGWVM DEAN+
Sbjct: 174 RRFIWAEISYFSVWFDELSEEMKARIRGYIKRGQLEIVTGGWVMNDEANT 223

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|320168525|gb|EFW45424.1| mannosidase 2 [Capsaspora owczarzaki ATCC 30864]

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/127 (54%), Positives = 90/127 (70%), Gaps = 2/127 (1%)

Query: 38  YEDEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHS 97
           + + + F N++GG W QGW++    A E     L  ++VVPHSHNDPGW +TF++Y+   
Sbjct: 155 FIESMPFDNLDGGVWKQGWDVQYA-ASEVQTRKL-DIYVVPHSHNDPGWIKTFDAYYSQQ 212

Query: 98  TKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWV 157
           TKSILDT+V  L +N KRKFIWAEMSYL  WW   + D ++  R LV +GQLEIVTGGWV
Sbjct: 213 TKSILDTVVNMLSQNSKRKFIWAEMSYLQRWWDEQTSDRRELTRRLVDNGQLEIVTGGWV 272

Query: 158 MTDEANS 164
           M+DEAN+
Sbjct: 273 MSDEANA 279

Source: Capsaspora owczarzaki ATCC 30864

Species: Capsaspora owczarzaki

Genus: Capsaspora

Class: Ichthyosporea

Superkingdom: Eukaryota

>gi|383854239|ref|XP_003702629.1| PREDICTED: alpha-mannosidase 2-like [Megachile rotundata]

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/124 (55%), Positives = 90/124 (72%), Gaps = 1/124 (0%)

Query: 41  EIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTKS 100
           ++EF N++GG W QGW+I  D   +  P   L+VFVVPHSHNDPGW  TFE Y+   T++
Sbjct: 126 QLEFDNVDGGVWKQGWDITYD-EKQWHPNRKLKVFVVPHSHNDPGWLSTFEKYYTFQTRN 184

Query: 101 ILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTD 160
           IL+ MVTKL E+ +RKFIWAE+S+  LWW+  S+ T + VR L+  GQLEIV+GGWVM D
Sbjct: 185 ILNNMVTKLAEDRRRKFIWAEISFFQLWWEDQSKTTHNVVRRLIHDGQLEIVSGGWVMPD 244

Query: 161 EANS 164
           E+ S
Sbjct: 245 ESVS 248

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357622223|gb|EHJ73787.1| putative mannosidase alpha class 2a [Danaus plexippus]

 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 101/161 (62%), Gaps = 9/161 (5%)

Query: 8   EEEEEEEEKTHTIWPGHNTCCIGKESMGKVYEDEIEFANINGGKWTQGWNIGLDLAHETD 67
           +E     +K +   P   T       M  +Y D I F N++GG W QGWNI     ++  
Sbjct: 70  DEPPRMHKKINMSCPAIQTSAKSDIQMLSMY-DRIMFDNVDGGVWKQGWNIEYK-DNQWS 127

Query: 68  PENLLRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSL 127
            +N L+VF+VPHSHNDPGW +TFE+Y+   T++I   MV KL E   RKFIWAE+SYL+L
Sbjct: 128 SKNKLKVFIVPHSHNDPGWLKTFENYYKTQTRAIFTNMVEKLNEGVGRKFIWAEVSYLAL 187

Query: 128 WWKTISEDTKDKVRL----LVKSGQLEIVTGGWVMTDEANS 164
           WW   + D  DK +L    L+KSGQ+EIVTGGWVM DEANS
Sbjct: 188 WW---ASDATDKEKLAFQKLLKSGQIEIVTGGWVMNDEANS 225

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
UNIPROTKB|F6V049	1150	MAN2A2 "Uncharacterized protei	0.439	0.106	0.544	4.2e-37
UNIPROTKB|E2QT95	1153	MAN2A2 "Uncharacterized protei	0.439	0.106	0.544	4.2e-37
UNIPROTKB|H0YNG5	938	MAN2A2 "Mannosidase, alpha, cl	0.439	0.131	0.536	5e-37
RGD|3038	489	Man2a1 "mannosidase, alpha, cl	0.446	0.255	0.554	6.4e-37
UNIPROTKB|E1BGJ4	1150	MAN2A2 "Uncharacterized protei	0.439	0.106	0.544	1.1e-36
UNIPROTKB|P49641	1150	MAN2A2 "Alpha-mannosidase 2x"	0.439	0.106	0.536	1.1e-36
UNIPROTKB|F1RMI9	1150	MAN2A2 "Uncharacterized protei	0.439	0.106	0.52	1e-35
FB|FBgn0011740	1108	alpha-Man-II "alpha Mannosidas	0.460	0.116	0.519	2.4e-35
MGI|MGI:2150656	1152	Man2a2 "mannosidase 2, alpha 2	0.439	0.106	0.52	2.7e-35
RGD|1310238	1164	Man2a2 "mannosidase, alpha, cl	0.439	0.105	0.52	2.8e-35

UNIPROTKB|F6V049 MAN2A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 377 (137.8 bits), Expect = 4.2e-37, Sum P(2) = 4.2e-37
 Identities = 68/125 (54%), Positives = 94/125 (75%)

Query:    40 DEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTK 99
             +E+ F N++GG W QG++I     H+ D E+L +VFVVPHSHNDPGW +TF+ Y+   T+
Sbjct:   136 EELPFDNVDGGVWKQGFDISYS-PHDWDAEDL-QVFVVPHSHNDPGWIKTFDKYYTEQTQ 193

Query:   100 SILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMT 159
              IL++MV+KL E+ +R+F+WAE+S+ + WW+ I+   K  VR LV +GQLEIVTGGWVM 
Sbjct:   194 HILNSMVSKLQEDPRRRFLWAEVSFFAKWWENINAQKKAAVRRLVGNGQLEIVTGGWVMP 253

Query:   160 DEANS 164
             DEANS
Sbjct:   254 DEANS 258

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0004559 "alpha-mannosidase activity" evidence=IEA

UNIPROTKB|E2QT95 MAN2A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 377 (137.8 bits), Expect = 4.2e-37, Sum P(2) = 4.2e-37
 Identities = 68/125 (54%), Positives = 94/125 (75%)

Query:    40 DEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTK 99
             +E+ F N++GG W QG++I     H+ D E+L +VFVVPHSHNDPGW +TF+ Y+   T+
Sbjct:   136 EELPFDNVDGGVWKQGFDISYS-PHDWDAEDL-QVFVVPHSHNDPGWIKTFDKYYTEQTQ 193

Query:   100 SILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMT 159
              IL++MV+KL E+ +R+F+WAE+S+ + WW+ I+   K  VR LV +GQLEIVTGGWVM 
Sbjct:   194 HILNSMVSKLQEDPRRRFLWAEVSFFAKWWENINAQKKAAVRRLVGNGQLEIVTGGWVMP 253

Query:   160 DEANS 164
             DEANS
Sbjct:   254 DEANS 258

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0004559 "alpha-mannosidase activity" evidence=IEA

UNIPROTKB|H0YNG5 MAN2A2 "Mannosidase, alpha, class 2A, member 2, isoform CRA_d" [Homo sapiens (taxid:9606)]

 Score = 373 (136.4 bits), Expect = 5.0e-37, Sum P(2) = 5.0e-37
 Identities = 67/125 (53%), Positives = 93/125 (74%)

Query:    40 DEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTK 99
             +E+ F N++GG W QG++I  D  H+ D E+L +VFVVPHSHNDPGW +TF+ Y+   T+
Sbjct:   136 EELPFDNVDGGVWRQGFDISYD-PHDWDAEDL-QVFVVPHSHNDPGWIKTFDKYYTEQTQ 193

Query:   100 SILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMT 159
              IL++MV+KL E+ +R+F+WAE+S+ + WW  I+   +  VR LV +GQLEI TGGWVM 
Sbjct:   194 HILNSMVSKLQEDPRRRFLWAEVSFFAKWWDNINVQKRAAVRRLVGNGQLEIATGGWVMP 253

Query:   160 DEANS 164
             DEANS
Sbjct:   254 DEANS 258

GO:0004559 "alpha-mannosidase activity" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

RGD|3038 Man2a1 "mannosidase, alpha, class 2A, member 1" [Rattus norvegicus (taxid:10116)]

 Score = 354 (129.7 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
 Identities = 71/128 (55%), Positives = 89/128 (69%)

Query:    37 VYEDEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVH 96
             VY D I F N +GG W QG++I  + A E D E L +VFVVPHSHNDPGW +TF  YF  
Sbjct:   100 VY-DLIPFDNPDGGVWKQGFDIKYE-ADEWDREPL-QVFVVPHSHNDPGWLKTFNDYFRD 156

Query:    97 STKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGW 156
              T+ I + MV KL E+  RKFIW+E+SYL+ WW  I    K+ V+ L+++GQLEIVTGGW
Sbjct:   157 KTQYIFNNMVLKLKEDSSRKFIWSEISYLAKWWDIIDNPKKEAVKSLLQNGQLEIVTGGW 216

Query:   157 VMTDEANS 164
             VM DEA +
Sbjct:   217 VMADEATT 224

GO:0000139 "Golgi membrane" evidence=IEA;ISO

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001889 "liver development" evidence=ISO

GO:0004559 "alpha-mannosidase activity" evidence=IEA

GO:0004572 "mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0006486 "protein glycosylation" evidence=IEA

GO:0006491 "N-glycan processing" evidence=ISO

GO:0007005 "mitochondrion organization" evidence=ISO

GO:0007033 "vacuole organization" evidence=ISO

GO:0007585 "respiratory gaseous exchange" evidence=ISO

GO:0008152 "metabolic process" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015923 "mannosidase activity" evidence=ISO

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=ISO

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048286 "lung alveolus development" evidence=ISO

UNIPROTKB|E1BGJ4 MAN2A2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 373 (136.4 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
 Identities = 68/125 (54%), Positives = 91/125 (72%)

Query:    40 DEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTK 99
             +E+ F N++GG W QG++I     H+ D E+L +VFVVPHSHNDPGW +TF+ Y+   T+
Sbjct:   136 EELPFDNVDGGVWKQGFDISYS-PHDWDSEDL-QVFVVPHSHNDPGWLKTFDKYYTEQTQ 193

Query:   100 SILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMT 159
              IL+ MV+KL E+ +R+FIWAE+S+ + WW  IS   +  VR LV +GQLEI TGGWVM 
Sbjct:   194 HILNNMVSKLQEDPRRRFIWAEVSFFAKWWDNISAQKRAAVRRLVGNGQLEIATGGWVMP 253

Query:   160 DEANS 164
             DEANS
Sbjct:   254 DEANS 258

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0004559 "alpha-mannosidase activity" evidence=IEA

UNIPROTKB|P49641 MAN2A2 "Alpha-mannosidase 2x" [Homo sapiens (taxid:9606)]

 Score = 373 (136.4 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
 Identities = 67/125 (53%), Positives = 93/125 (74%)

Query:    40 DEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTK 99
             +E+ F N++GG W QG++I  D  H+ D E+L +VFVVPHSHNDPGW +TF+ Y+   T+
Sbjct:   136 EELPFDNVDGGVWRQGFDISYD-PHDWDAEDL-QVFVVPHSHNDPGWIKTFDKYYTEQTQ 193

Query:   100 SILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMT 159
              IL++MV+KL E+ +R+F+WAE+S+ + WW  I+   +  VR LV +GQLEI TGGWVM 
Sbjct:   194 HILNSMVSKLQEDPRRRFLWAEVSFFAKWWDNINVQKRAAVRRLVGNGQLEIATGGWVMP 253

Query:   160 DEANS 164
             DEANS
Sbjct:   254 DEANS 258

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=IEA

GO:0004572 "mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity" evidence=NAS

GO:0000139 "Golgi membrane" evidence=NAS;TAS

GO:0005975 "carbohydrate metabolic process" evidence=NAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1RMI9 MAN2A2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 364 (133.2 bits), Expect = 1.0e-35, Sum P(2) = 1.0e-35
 Identities = 65/125 (52%), Positives = 91/125 (72%)

Query:    40 DEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTK 99
             +E+ F N++GG W QG++I     H+ D E+L +VFVVPHSHNDPGW +TF+ Y+   T+
Sbjct:   136 EELPFDNLDGGVWKQGFDISYS-PHDWDTEDL-QVFVVPHSHNDPGWLKTFDKYYTEQTQ 193

Query:   100 SILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMT 159
              IL+ M++KL E+ +R+F+WAE+S+ + WW  I+   +  VR LV +GQLEI TGGWVM 
Sbjct:   194 HILNNMLSKLQEDPRRRFLWAEVSFFAKWWDNINAQKRAAVRRLVGNGQLEIATGGWVMP 253

Query:   160 DEANS 164
             DEANS
Sbjct:   254 DEANS 258

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0004559 "alpha-mannosidase activity" evidence=IEA

FB|FBgn0011740 alpha-Man-II "alpha Mannosidase II" [Drosophila melanogaster (taxid:7227)]

 Score = 357 (130.7 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
 Identities = 68/131 (51%), Positives = 92/131 (70%)

Query:    34 MGKVYEDEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESY 93
             M ++Y D + F +I+GG W QGWNI  D   + +  + L+VFVVPHSHNDPGW QTFE Y
Sbjct:   108 MLELY-DRMSFKDIDGGVWKQGWNIKYDPL-KYNAHHKLKVFVVPHSHNDPGWIQTFEEY 165

Query:    94 FVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVT 153
             + H TK IL   +  L +N + KFIWAE+SY + ++  + E+ K +++ +VK+GQLE VT
Sbjct:   166 YQHDTKHILSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVT 225

Query:   154 GGWVMTDEANS 164
             GGWVM DEANS
Sbjct:   226 GGWVMPDEANS 236

GO:0000139 "Golgi membrane" evidence=ISS;NAS

GO:0004572 "mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity" evidence=ISS;NAS

GO:0006486 "protein glycosylation" evidence=ISS

GO:0006487 "protein N-linked glycosylation" evidence=NAS

GO:0005783 "endoplasmic reticulum" evidence=NAS

GO:0005795 "Golgi stack" evidence=NAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0015923 "mannosidase activity" evidence=IDA

GO:0006517 "protein deglycosylation" evidence=IDA

GO:0035010 "encapsulation of foreign target" evidence=IMP

MGI|MGI:2150656 Man2a2 "mannosidase 2, alpha 2" [Mus musculus (taxid:10090)]

 Score = 360 (131.8 bits), Expect = 2.7e-35, Sum P(2) = 2.7e-35
 Identities = 65/125 (52%), Positives = 91/125 (72%)

Query:    40 DEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTK 99
             +++ F N+ GG W QG++I     ++ D E+L +VFVVPHSHNDPGW +TF+ Y+   T+
Sbjct:   136 EDLPFDNVEGGVWRQGFDISYS-PNDWDTEDL-QVFVVPHSHNDPGWIKTFDKYYTEQTQ 193

Query:   100 SILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMT 159
              IL++MV+KL E+ +R+F+WAE+S+ + WW  IS   +  VR LV +GQLEI TGGWVM 
Sbjct:   194 HILNSMVSKLQEDPRRRFLWAEVSFFAKWWDNISAQKRAAVRRLVGNGQLEIATGGWVMP 253

Query:   160 DEANS 164
             DEANS
Sbjct:   254 DEANS 258

GO:0003824 "catalytic activity" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0004559 "alpha-mannosidase activity" evidence=IEA

GO:0004572 "mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015923 "mannosidase activity" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=IDA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1310238 Man2a2 "mannosidase, alpha, class 2A, member 2" [Rattus norvegicus (taxid:10116)]

 Score = 360 (131.8 bits), Expect = 2.8e-35, Sum P(2) = 2.8e-35
 Identities = 65/125 (52%), Positives = 91/125 (72%)

Query:    40 DEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTK 99
             +++ F N+ GG W QG++I     ++ D E+L +VFVVPHSHNDPGW +TF+ Y+   T+
Sbjct:   136 EDLPFDNVEGGVWRQGFDISYS-PNDWDAEDL-QVFVVPHSHNDPGWIKTFDKYYTEQTQ 193

Query:   100 SILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMT 159
              IL++MV+KL E+ +R+F+WAE+S+ + WW  IS   +  VR LV +GQLEI TGGWVM 
Sbjct:   194 HILNSMVSKLQEDPRRRFLWAEVSFFAKWWDNISAQKRAAVRRLVGNGQLEIATGGWVMP 253

Query:   160 DEANS 164
             DEANS
Sbjct:   254 DEANS 258

GO:0004559 "alpha-mannosidase activity" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015923 "mannosidase activity" evidence=ISO

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=ISO

GO:0030246 "carbohydrate binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q24451	MAN2_DROME	3, ., 2, ., 1, ., 1, 1, 4	0.528	0.4428	0.1119	yes	N/A
Q8BRK9	MA2A2_MOUSE	3, ., 2, ., 1, ., 1, 1, 4	0.5241	0.4357	0.1059	yes	N/A
P49641	MA2A2_HUMAN	3, ., 2, ., 1, ., 1, 1, 4	0.5403	0.4357	0.1060	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	280
cd10809	340	cd10809, GH38N_AMII_GMII_SfManIII_like, N-terminal	3e-56
PLN02701	1050	PLN02701, PLN02701, alpha-mannosidase	2e-47
cd00451	258	cd00451, GH38N_AMII_euk, N-terminal catalytic doma	3e-43
cd11666	344	cd11666, GH38N_Man2A1, N-terminal catalytic domain	2e-39
cd11667	344	cd11667, GH38N_Man2A2, N-terminal catalytic domain	7e-39
cd10810	278	cd10810, GH38N_AMII_LAM_like, N-terminal catalytic	6e-36
pfam01074	269	pfam01074, Glyco_hydro_38, Glycosyl hydrolases fam	4e-30
cd10786	251	cd10786, GH38N_AMII_like, N-terminal catalytic dom	3e-25
cd10811	326	cd10811, GH38N_AMII_Epman_like, N-terminal catalyt	2e-19
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	8e-15
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-14
pfam04147	809	pfam04147, Nop14, Nop14-like family	4e-14
pfam04147	809	pfam04147, Nop14, Nop14-like family	5e-14
cd10785	203	cd10785, GH38-57_N_LamB_YdjC_SF, Catalytic domain	3e-13
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	9e-13
pfam04147	809	pfam04147, Nop14, Nop14-like family	5e-12
pfam04147	809	pfam04147, Nop14, Nop14-like family	8e-12
pfam04147	809	pfam04147, Nop14, Nop14-like family	8e-12
pfam04147	809	pfam04147, Nop14, Nop14-like family	1e-11
pfam04147	809	pfam04147, Nop14, Nop14-like family	1e-11
pfam05285	317	pfam05285, SDA1, SDA1	1e-11
pfam04147	809	pfam04147, Nop14, Nop14-like family	2e-11
pfam05285	317	pfam05285, SDA1, SDA1	2e-11
pfam05285	317	pfam05285, SDA1, SDA1	3e-11
pfam05285	317	pfam05285, SDA1, SDA1	3e-11
pfam05285	317	pfam05285, SDA1, SDA1	5e-11
pfam03344	715	pfam03344, Daxx, Daxx Family	5e-11
pfam05285	317	pfam05285, SDA1, SDA1	6e-11
pfam03344	715	pfam03344, Daxx, Daxx Family	6e-11
pfam03344	715	pfam03344, Daxx, Daxx Family	8e-11
pfam03344	715	pfam03344, Daxx, Daxx Family	1e-10
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	1e-10
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	1e-10
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-10
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-10
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-10
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	3e-10
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	3e-10
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	5e-10
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	5e-10
pfam03344	715	pfam03344, Daxx, Daxx Family	6e-10
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	6e-10
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	6e-10
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	7e-10
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	9e-10
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	1e-09
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	1e-09
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	1e-09
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	1e-09
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	1e-09
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	1e-09
pfam03985	431	pfam03985, Paf1, Paf1	1e-09
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-09
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-09
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-09
pfam03344	715	pfam03344, Daxx, Daxx Family	2e-09
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	2e-09
pfam02724	583	pfam02724, CDC45, CDC45-like protein	2e-09
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	2e-09
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-09
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-09
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-09
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	4e-09
pfam03985	431	pfam03985, Paf1, Paf1	5e-09
pfam03985	431	pfam03985, Paf1, Paf1	5e-09
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	6e-09
pfam04712	481	pfam04712, Radial_spoke, Radial spokehead-like pro	7e-09
pfam03985	431	pfam03985, Paf1, Paf1	8e-09
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	9e-09
pfam03985	431	pfam03985, Paf1, Paf1	9e-09
pfam03985	431	pfam03985, Paf1, Paf1	9e-09
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	1e-08
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	1e-08
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	1e-08
pfam03985	431	pfam03985, Paf1, Paf1	1e-08
pfam03985	431	pfam03985, Paf1, Paf1	1e-08
pfam03985	431	pfam03985, Paf1, Paf1	1e-08
pfam02724	583	pfam02724, CDC45, CDC45-like protein	1e-08
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-08
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-08
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-08
pfam03344	715	pfam03344, Daxx, Daxx Family	2e-08
pfam02724	583	pfam02724, CDC45, CDC45-like protein	2e-08
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-08
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-08
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-08
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-08
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	3e-08
pfam02724	583	pfam02724, CDC45, CDC45-like protein	3e-08
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	3e-08
COG4547	620	COG4547, CobT, Cobalamin biosynthesis protein CobT	3e-08
COG4547	620	COG4547, CobT, Cobalamin biosynthesis protein CobT	3e-08
COG4547	620	COG4547, CobT, Cobalamin biosynthesis protein CobT	3e-08
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	4e-08
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	4e-08
COG4547	620	COG4547, CobT, Cobalamin biosynthesis protein CobT	4e-08
TIGR01651	600	TIGR01651, CobT, cobaltochelatase, CobT subunit	4e-08
TIGR01651	600	TIGR01651, CobT, cobaltochelatase, CobT subunit	4e-08
pfam05758	832	pfam05758, Ycf1, Ycf1	4e-08
pfam03344	715	pfam03344, Daxx, Daxx Family	5e-08
pfam02724	583	pfam02724, CDC45, CDC45-like protein	5e-08
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	5e-08
pfam04931	784	pfam04931, DNA_pol_phi, DNA polymerase phi	5e-08
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	5e-08
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	5e-08
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	5e-08
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	6e-08
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	7e-08
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	7e-08
TIGR01651	600	TIGR01651, CobT, cobaltochelatase, CobT subunit	7e-08
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	8e-08
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	8e-08
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	9e-08
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	1e-07
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	1e-07
pfam03344	715	pfam03344, Daxx, Daxx Family	1e-07
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	1e-07
COG4547	620	COG4547, CobT, Cobalamin biosynthesis protein CobT	1e-07
TIGR01651	600	TIGR01651, CobT, cobaltochelatase, CobT subunit	1e-07
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	1e-07
TIGR01554	384	TIGR01554, major_cap_HK97, phage major capsid prot	1e-07
TIGR01554	384	TIGR01554, major_cap_HK97, phage major capsid prot	1e-07
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	1e-07
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	1e-07
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-07
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-07
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-07
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-07
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-07
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-07
pfam05285	317	pfam05285, SDA1, SDA1	2e-07
pfam03344	715	pfam03344, Daxx, Daxx Family	2e-07
pfam03344	715	pfam03344, Daxx, Daxx Family	2e-07
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	2e-07
pfam05758	832	pfam05758, Ycf1, Ycf1	2e-07
pfam05758	832	pfam05758, Ycf1, Ycf1	2e-07
pfam05758	832	pfam05758, Ycf1, Ycf1	2e-07
pfam05758	832	pfam05758, Ycf1, Ycf1	2e-07
pfam05758	832	pfam05758, Ycf1, Ycf1	2e-07
pfam05758	832	pfam05758, Ycf1, Ycf1	2e-07
pfam04931	784	pfam04931, DNA_pol_phi, DNA polymerase phi	2e-07
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	2e-07
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	2e-07
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	2e-07
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	2e-07
TIGR01554	384	TIGR01554, major_cap_HK97, phage major capsid prot	2e-07
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	2e-07
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	2e-07
COG5177	769	COG5177, COG5177, Uncharacterized conserved protei	2e-07
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	2e-07
pfam06213	282	pfam06213, CobT, Cobalamin biosynthesis protein Co	2e-07
COG5406	1001	COG5406, COG5406, Nucleosome binding factor SPN, S	2e-07
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-07
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-07
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-07
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-07
pfam05285	317	pfam05285, SDA1, SDA1	3e-07
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	3e-07
TIGR01651	600	TIGR01651, CobT, cobaltochelatase, CobT subunit	3e-07
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	3e-07
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	3e-07
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	3e-07
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	3e-07
pfam06213	282	pfam06213, CobT, Cobalamin biosynthesis protein Co	3e-07
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	3e-07
pfam05285	317	pfam05285, SDA1, SDA1	4e-07
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	4e-07
pfam05758	832	pfam05758, Ycf1, Ycf1	4e-07
pfam05758	832	pfam05758, Ycf1, Ycf1	4e-07
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	4e-07
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	4e-07
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	4e-07
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	4e-07
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	4e-07
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	4e-07
COG5177	769	COG5177, COG5177, Uncharacterized conserved protei	4e-07
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	4e-07
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	4e-07
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	4e-07
pfam03344	715	pfam03344, Daxx, Daxx Family	5e-07
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	5e-07
pfam05758	832	pfam05758, Ycf1, Ycf1	5e-07
pfam05758	832	pfam05758, Ycf1, Ycf1	5e-07
TIGR01554	384	TIGR01554, major_cap_HK97, phage major capsid prot	5e-07
TIGR01554	384	TIGR01554, major_cap_HK97, phage major capsid prot	5e-07
pfam06213	282	pfam06213, CobT, Cobalamin biosynthesis protein Co	5e-07
pfam06213	282	pfam06213, CobT, Cobalamin biosynthesis protein Co	5e-07
pfam06213	282	pfam06213, CobT, Cobalamin biosynthesis protein Co	5e-07
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	5e-07
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	6e-07
pfam03344	715	pfam03344, Daxx, Daxx Family	6e-07
pfam05758	832	pfam05758, Ycf1, Ycf1	6e-07
pfam05758	832	pfam05758, Ycf1, Ycf1	6e-07
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	6e-07
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	6e-07
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	6e-07
pfam06213	282	pfam06213, CobT, Cobalamin biosynthesis protein Co	6e-07
COG5406	1001	COG5406, COG5406, Nucleosome binding factor SPN, S	6e-07
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	6e-07
pfam05285	317	pfam05285, SDA1, SDA1	7e-07
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	7e-07
pfam06213	282	pfam06213, CobT, Cobalamin biosynthesis protein Co	7e-07
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	7e-07
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	7e-07
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	7e-07
pfam06213	282	pfam06213, CobT, Cobalamin biosynthesis protein Co	8e-07
COG5406	1001	COG5406, COG5406, Nucleosome binding factor SPN, S	8e-07
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	8e-07
PRK09202	470	PRK09202, nusA, transcription elongation factor Nu	8e-07
PRK05306	746	PRK05306, infB, translation initiation factor IF-2	8e-07
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	9e-07
pfam05758	832	pfam05758, Ycf1, Ycf1	9e-07
pfam04931	784	pfam04931, DNA_pol_phi, DNA polymerase phi	9e-07
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	9e-07
PRK05306	746	PRK05306, infB, translation initiation factor IF-2	9e-07
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	1e-06
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	1e-06
pfam05285	317	pfam05285, SDA1, SDA1	1e-06
pfam02724	583	pfam02724, CDC45, CDC45-like protein	1e-06
pfam05758	832	pfam05758, Ycf1, Ycf1	1e-06
pfam05758	832	pfam05758, Ycf1, Ycf1	1e-06
pfam05758	832	pfam05758, Ycf1, Ycf1	1e-06
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	1e-06
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	1e-06
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	1e-06
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	1e-06
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	1e-06
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	1e-06
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	1e-06
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	1e-06
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	1e-06
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	1e-06
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	1e-06
COG5177	769	COG5177, COG5177, Uncharacterized conserved protei	1e-06
COG5406	1001	COG5406, COG5406, Nucleosome binding factor SPN, S	1e-06
COG5406	1001	COG5406, COG5406, Nucleosome binding factor SPN, S	1e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	1e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	1e-06
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	1e-06
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	1e-06
PRK09202	470	PRK09202, nusA, transcription elongation factor Nu	1e-06
PLN03142	1033	PLN03142, PLN03142, Probable chromatin-remodeling	1e-06
pfam04889	241	pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont	1e-06
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	1e-06
pfam05285	317	pfam05285, SDA1, SDA1	2e-06
pfam05758	832	pfam05758, Ycf1, Ycf1	2e-06
pfam05758	832	pfam05758, Ycf1, Ycf1	2e-06
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	2e-06
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	2e-06
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	2e-06
pfam06213	282	pfam06213, CobT, Cobalamin biosynthesis protein Co	2e-06
pfam06213	282	pfam06213, CobT, Cobalamin biosynthesis protein Co	2e-06
COG5406	1001	COG5406, COG5406, Nucleosome binding factor SPN, S	2e-06
COG5406	1001	COG5406, COG5406, Nucleosome binding factor SPN, S	2e-06
COG5406	1001	COG5406, COG5406, Nucleosome binding factor SPN, S	2e-06
COG5406	1001	COG5406, COG5406, Nucleosome binding factor SPN, S	2e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	2e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	2e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	2e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	2e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	2e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	2e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	2e-06
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	2e-06
PRK09202	470	PRK09202, nusA, transcription elongation factor Nu	2e-06
PRK05306	746	PRK05306, infB, translation initiation factor IF-2	2e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-06
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	2e-06
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	2e-06
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	2e-06
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-06
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	3e-06
pfam02724	583	pfam02724, CDC45, CDC45-like protein	3e-06
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	3e-06
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	3e-06
pfam04931	784	pfam04931, DNA_pol_phi, DNA polymerase phi	3e-06
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	3e-06
pfam06213	282	pfam06213, CobT, Cobalamin biosynthesis protein Co	3e-06
COG5406	1001	COG5406, COG5406, Nucleosome binding factor SPN, S	3e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	3e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	3e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	3e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	3e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	3e-06
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	3e-06
PLN03142	1033	PLN03142, PLN03142, Probable chromatin-remodeling	3e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-06
pfam04615	728	pfam04615, Utp14, Utp14 protein	3e-06
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	3e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-06
pfam03344	715	pfam03344, Daxx, Daxx Family	4e-06
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	4e-06
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	4e-06
COG5406	1001	COG5406, COG5406, Nucleosome binding factor SPN, S	4e-06
COG5406	1001	COG5406, COG5406, Nucleosome binding factor SPN, S	4e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	4e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	4e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	4e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	4e-06
PRK09202	470	PRK09202, nusA, transcription elongation factor Nu	4e-06
pfam04889	241	pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont	4e-06
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	4e-06
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	4e-06
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	5e-06
TIGR01651	600	TIGR01651, CobT, cobaltochelatase, CobT subunit	5e-06
TIGR01554	384	TIGR01554, major_cap_HK97, phage major capsid prot	5e-06
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	5e-06
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	5e-06
COG5406	1001	COG5406, COG5406, Nucleosome binding factor SPN, S	5e-06
COG5406	1001	COG5406, COG5406, Nucleosome binding factor SPN, S	5e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	5e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	5e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	5e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	5e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	5e-06
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	5e-06
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	5e-06
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	5e-06
pfam03344	715	pfam03344, Daxx, Daxx Family	6e-06
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	6e-06
TIGR01554	384	TIGR01554, major_cap_HK97, phage major capsid prot	6e-06
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	6e-06
COG5406	1001	COG5406, COG5406, Nucleosome binding factor SPN, S	6e-06
COG5406	1001	COG5406, COG5406, Nucleosome binding factor SPN, S	6e-06
COG5406	1001	COG5406, COG5406, Nucleosome binding factor SPN, S	6e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	6e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	6e-06
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	6e-06
PLN03142	1033	PLN03142, PLN03142, Probable chromatin-remodeling	6e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-06
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	6e-06
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	6e-06
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	6e-06
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	7e-06
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	7e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	7e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-06
PRK12298	390	PRK12298, obgE, GTPase CgtA; Reviewed	7e-06
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	8e-06
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	8e-06
PRK05306	746	PRK05306, infB, translation initiation factor IF-2	8e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	8e-06
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	8e-06
pfam00183	529	pfam00183, HSP90, Hsp90 protein	8e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	9e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	9e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	9e-06
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	9e-06
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	9e-06
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	1e-05
TIGR01554	384	TIGR01554, major_cap_HK97, phage major capsid prot	1e-05
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	1e-05
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	1e-05
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	1e-05
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	1e-05
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	1e-05
PRK05306	746	PRK05306, infB, translation initiation factor IF-2	1e-05
pfam04889	241	pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont	1e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-05
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	1e-05
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	1e-05
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	1e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	1e-05
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	1e-05
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	1e-05
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	1e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	1e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	1e-05
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	1e-05
pfam09073	424	pfam09073, BUD22, BUD22	1e-05
PRK06007	542	PRK06007, fliF, flagellar MS-ring protein; Reviewe	1e-05
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	2e-05
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	2e-05
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	2e-05
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	2e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
pfam04615	728	pfam04615, Utp14, Utp14 protein	2e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	2e-05
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	2e-05
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	2e-05
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	2e-05
pfam00183	529	pfam00183, HSP90, Hsp90 protein	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	2e-05
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	2e-05
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	2e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	2e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	2e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	2e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	2e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	2e-05
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	2e-05
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	2e-05
pfam09073	424	pfam09073, BUD22, BUD22	2e-05
pfam09073	424	pfam09073, BUD22, BUD22	2e-05
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	2e-05
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	2e-05
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	3e-05
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	3e-05
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	3e-05
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	3e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-05
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	3e-05
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	3e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-05
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	3e-05
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	3e-05
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	3e-05
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	3e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	3e-05
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	3e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	3e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	3e-05
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	3e-05
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	3e-05
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	3e-05
pfam14153	185	pfam14153, Spore_coat_CotO, Spore coat protein Cot	3e-05
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	4e-05
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	4e-05
pfam04889	241	pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont	4e-05
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	4e-05
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	4e-05
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	4e-05
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	4e-05
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	4e-05
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	4e-05
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	4e-05
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	4e-05
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	4e-05
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	4e-05
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	4e-05
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	4e-05
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	4e-05
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	4e-05
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	4e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-05
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	4e-05
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	4e-05
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	4e-05
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	4e-05
pfam00183	529	pfam00183, HSP90, Hsp90 protein	4e-05
pfam00183	529	pfam00183, HSP90, Hsp90 protein	4e-05
pfam00183	529	pfam00183, HSP90, Hsp90 protein	4e-05
pfam00183	529	pfam00183, HSP90, Hsp90 protein	4e-05
pfam00183	529	pfam00183, HSP90, Hsp90 protein	4e-05
pfam00183	529	pfam00183, HSP90, Hsp90 protein	4e-05
pfam00183	529	pfam00183, HSP90, Hsp90 protein	4e-05
pfam00183	529	pfam00183, HSP90, Hsp90 protein	4e-05
pfam00183	529	pfam00183, HSP90, Hsp90 protein	4e-05
pfam00183	529	pfam00183, HSP90, Hsp90 protein	4e-05
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	4e-05
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	4e-05
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	4e-05
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	4e-05
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	4e-05
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	4e-05
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	4e-05
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	4e-05
PRK06007	542	PRK06007, fliF, flagellar MS-ring protein; Reviewe	4e-05
PRK06007	542	PRK06007, fliF, flagellar MS-ring protein; Reviewe	4e-05
PRK06007	542	PRK06007, fliF, flagellar MS-ring protein; Reviewe	4e-05
pfam06512	230	pfam06512, Na_trans_assoc, Sodium ion transport-as	4e-05
PRK12585	197	PRK12585, PRK12585, putative monovalent cation/H+	4e-05
PRK12585	197	PRK12585, PRK12585, putative monovalent cation/H+	4e-05
TIGR03779	410	TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative	4e-05
COG5167	776	COG5167, VID27, Protein involved in vacuole import	4e-05
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	5e-05
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	5e-05
COG5406	1001	COG5406, COG5406, Nucleosome binding factor SPN, S	5e-05
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	5e-05
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	5e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-05
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	5e-05
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	5e-05
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	5e-05
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	5e-05
pfam00183	529	pfam00183, HSP90, Hsp90 protein	5e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	5e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	5e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	5e-05
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	5e-05
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	5e-05
pfam09073	424	pfam09073, BUD22, BUD22	5e-05
PRK06007	542	PRK06007, fliF, flagellar MS-ring protein; Reviewe	5e-05
PRK06007	542	PRK06007, fliF, flagellar MS-ring protein; Reviewe	5e-05
PRK06007	542	PRK06007, fliF, flagellar MS-ring protein; Reviewe	5e-05
PRK12585	197	PRK12585, PRK12585, putative monovalent cation/H+	5e-05
PRK12585	197	PRK12585, PRK12585, putative monovalent cation/H+	5e-05
PRK12585	197	PRK12585, PRK12585, putative monovalent cation/H+	5e-05
pfam11719	397	pfam11719, Drc1-Sld2, DNA replication and checkpoi	5e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	5e-05
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	6e-05
pfam04931	784	pfam04931, DNA_pol_phi, DNA polymerase phi	6e-05
pfam04931	784	pfam04931, DNA_pol_phi, DNA polymerase phi	6e-05
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	6e-05
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	6e-05
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	6e-05
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	6e-05
PRK12298	390	PRK12298, obgE, GTPase CgtA; Reviewed	6e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	6e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	6e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	6e-05
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	6e-05
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	6e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	6e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	6e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	6e-05
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	6e-05
PRK06007	542	PRK06007, fliF, flagellar MS-ring protein; Reviewe	6e-05
PRK06007	542	PRK06007, fliF, flagellar MS-ring protein; Reviewe	6e-05
PRK06007	542	PRK06007, fliF, flagellar MS-ring protein; Reviewe	6e-05
COG5167	776	COG5167, VID27, Protein involved in vacuole import	6e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	6e-05
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	6e-05
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	7e-05
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	7e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	7e-05
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	7e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-05
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	7e-05
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	7e-05
PRK12298	390	PRK12298, obgE, GTPase CgtA; Reviewed	7e-05
pfam00183	529	pfam00183, HSP90, Hsp90 protein	7e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	7e-05
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	7e-05
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	7e-05
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	7e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	7e-05
pfam14153	185	pfam14153, Spore_coat_CotO, Spore coat protein Cot	7e-05
PRK09202	470	PRK09202, nusA, transcription elongation factor Nu	8e-05
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	8e-05
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	8e-05
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	8e-05
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	8e-05
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	8e-05
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	8e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	8e-05
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	8e-05
pfam14153	185	pfam14153, Spore_coat_CotO, Spore coat protein Cot	8e-05
pfam14153	185	pfam14153, Spore_coat_CotO, Spore coat protein Cot	8e-05
pfam09756	189	pfam09756, DDRGK, DDRGK domain	8e-05
PHA00435	306	PHA00435, PHA00435, capsid assembly protein	8e-05
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	9e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	9e-05
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	9e-05
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	9e-05
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	9e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	9e-05
pfam09073	424	pfam09073, BUD22, BUD22	9e-05
pfam14153	185	pfam14153, Spore_coat_CotO, Spore coat protein Cot	9e-05
PRK12585	197	PRK12585, PRK12585, putative monovalent cation/H+	9e-05
PRK12585	197	PRK12585, PRK12585, putative monovalent cation/H+	9e-05
PRK12585	197	PRK12585, PRK12585, putative monovalent cation/H+	9e-05
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	9e-05
pfam09756	189	pfam09756, DDRGK, DDRGK domain	9e-05
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	9e-05
pfam05285	317	pfam05285, SDA1, SDA1	1e-04
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	1e-04
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	1e-04
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	1e-04
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	1e-04
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	1e-04
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	1e-04
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	1e-04
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	1e-04
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	1e-04
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	1e-04
pfam00183	529	pfam00183, HSP90, Hsp90 protein	1e-04
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	1e-04
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	1e-04
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	1e-04
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	1e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	1e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	1e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	1e-04
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	1e-04
PRK06007	542	PRK06007, fliF, flagellar MS-ring protein; Reviewe	1e-04
PRK06007	542	PRK06007, fliF, flagellar MS-ring protein; Reviewe	1e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	1e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	1e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	1e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	1e-04
pfam14153	185	pfam14153, Spore_coat_CotO, Spore coat protein Cot	1e-04
pfam14153	185	pfam14153, Spore_coat_CotO, Spore coat protein Cot	1e-04
pfam14153	185	pfam14153, Spore_coat_CotO, Spore coat protein Cot	1e-04
pfam14153	185	pfam14153, Spore_coat_CotO, Spore coat protein Cot	1e-04
PRK12585	197	PRK12585, PRK12585, putative monovalent cation/H+	1e-04
TIGR03779	410	TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative	1e-04
COG5167	776	COG5167, VID27, Protein involved in vacuole import	1e-04
COG5167	776	COG5167, VID27, Protein involved in vacuole import	1e-04
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	1e-04
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	1e-04
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	1e-04
COG5593	821	COG5593, COG5593, Nucleic-acid-binding protein pos	1e-04
COG5163	591	COG5163, NOP7, Protein required for biogenesis of	1e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	1e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	1e-04
COG4547	620	COG4547, CobT, Cobalamin biosynthesis protein CobT	2e-04
pfam04931	784	pfam04931, DNA_pol_phi, DNA polymerase phi	2e-04
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	2e-04
pfam04889	241	pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont	2e-04
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	2e-04
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	2e-04
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	2e-04
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	2e-04
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	2e-04
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	2e-04
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	2e-04
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	2e-04
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	2e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	2e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	2e-04
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	2e-04
pfam09073	424	pfam09073, BUD22, BUD22	2e-04
PRK06007	542	PRK06007, fliF, flagellar MS-ring protein; Reviewe	2e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	2e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	2e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	2e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	2e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	2e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	2e-04
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	2e-04
pfam14153	185	pfam14153, Spore_coat_CotO, Spore coat protein Cot	2e-04
pfam14153	185	pfam14153, Spore_coat_CotO, Spore coat protein Cot	2e-04
pfam14153	185	pfam14153, Spore_coat_CotO, Spore coat protein Cot	2e-04
pfam06512	230	pfam06512, Na_trans_assoc, Sodium ion transport-as	2e-04
PRK12585	197	PRK12585, PRK12585, putative monovalent cation/H+	2e-04
PRK12585	197	PRK12585, PRK12585, putative monovalent cation/H+	2e-04
PRK12585	197	PRK12585, PRK12585, putative monovalent cation/H+	2e-04
PRK12585	197	PRK12585, PRK12585, putative monovalent cation/H+	2e-04
PRK12585	197	PRK12585, PRK12585, putative monovalent cation/H+	2e-04
PRK12585	197	PRK12585, PRK12585, putative monovalent cation/H+	2e-04
PRK12585	197	PRK12585, PRK12585, putative monovalent cation/H+	2e-04
COG5167	776	COG5167, VID27, Protein involved in vacuole import	2e-04
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	2e-04
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	2e-04
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	2e-04
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	2e-04
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	2e-04
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	2e-04
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	2e-04
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	2e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	2e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	2e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	2e-04
PRK04335	313	PRK04335, PRK04335, cell division protein ZipA; Pr	2e-04
PRK04335	313	PRK04335, PRK04335, cell division protein ZipA; Pr	2e-04
PRK14160	211	PRK14160, PRK14160, heat shock protein GrpE; Provi	2e-04
PRK14160	211	PRK14160, PRK14160, heat shock protein GrpE; Provi	2e-04
PRK14160	211	PRK14160, PRK14160, heat shock protein GrpE; Provi	2e-04
PRK14160	211	PRK14160, PRK14160, heat shock protein GrpE; Provi	2e-04
TIGR00600	1034	TIGR00600, rad2, DNA excision repair protein (rad2	2e-04
COG3064	387	COG3064, TolA, Membrane protein involved in colici	2e-04
PRK05658	619	PRK05658, PRK05658, RNA polymerase sigma factor Rp	2e-04
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	3e-04
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	3e-04
pfam04931	784	pfam04931, DNA_pol_phi, DNA polymerase phi	3e-04
COG5177	769	COG5177, COG5177, Uncharacterized conserved protei	3e-04
pfam04889	241	pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont	3e-04
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	3e-04
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	3e-04
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	3e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	3e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	3e-04
PRK06007	542	PRK06007, fliF, flagellar MS-ring protein; Reviewe	3e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	3e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	3e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	3e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	3e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	3e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	3e-04
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	3e-04
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	3e-04
pfam14153	185	pfam14153, Spore_coat_CotO, Spore coat protein Cot	3e-04
pfam06512	230	pfam06512, Na_trans_assoc, Sodium ion transport-as	3e-04
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	3e-04
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	3e-04
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	3e-04
pfam09756	189	pfam09756, DDRGK, DDRGK domain	3e-04
PHA00435	306	PHA00435, PHA00435, capsid assembly protein	3e-04
PHA00435	306	PHA00435, PHA00435, capsid assembly protein	3e-04
COG5593	821	COG5593, COG5593, Nucleic-acid-binding protein pos	3e-04
PRK14160	211	PRK14160, PRK14160, heat shock protein GrpE; Provi	3e-04
TIGR00600	1034	TIGR00600, rad2, DNA excision repair protein (rad2	3e-04
COG3064	387	COG3064, TolA, Membrane protein involved in colici	3e-04
COG3064	387	COG3064, TolA, Membrane protein involved in colici	3e-04
COG3064	387	COG3064, TolA, Membrane protein involved in colici	3e-04
pfam09731	493	pfam09731, Mitofilin, Mitochondrial inner membrane	3e-04
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	3e-04
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	3e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-04
PRK08493	819	PRK08493, PRK08493, NADH dehydrogenase subunit G;	3e-04
pfam05340	565	pfam05340, DUF740, Protein of unknown function (DU	3e-04
pfam00012	598	pfam00012, HSP70, Hsp70 protein	3e-04
PRK12903	925	PRK12903, secA, preprotein translocase subunit Sec	3e-04
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	4e-04
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	4e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-04
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	4e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	4e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	4e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	4e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	4e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	4e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	4e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	4e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	4e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	4e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	4e-04
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	4e-04
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	4e-04
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	4e-04
PHA00435	306	PHA00435, PHA00435, capsid assembly protein	4e-04
PHA00435	306	PHA00435, PHA00435, capsid assembly protein	4e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	4e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	4e-04
COG5593	821	COG5593, COG5593, Nucleic-acid-binding protein pos	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	4e-04
PRK14160	211	PRK14160, PRK14160, heat shock protein GrpE; Provi	4e-04
PRK14160	211	PRK14160, PRK14160, heat shock protein GrpE; Provi	4e-04
TIGR00600	1034	TIGR00600, rad2, DNA excision repair protein (rad2	4e-04
COG3064	387	COG3064, TolA, Membrane protein involved in colici	4e-04
PRK05658	619	PRK05658, PRK05658, RNA polymerase sigma factor Rp	4e-04
PRK05658	619	PRK05658, PRK05658, RNA polymerase sigma factor Rp	4e-04
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	4e-04
pfam00012	598	pfam00012, HSP70, Hsp70 protein	4e-04
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	4e-04
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	5e-04
pfam05758	832	pfam05758, Ycf1, Ycf1	5e-04
COG5177	769	COG5177, COG5177, Uncharacterized conserved protei	5e-04
COG5177	769	COG5177, COG5177, Uncharacterized conserved protei	5e-04
COG5177	769	COG5177, COG5177, Uncharacterized conserved protei	5e-04
pfam04615	728	pfam04615, Utp14, Utp14 protein	5e-04
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	5e-04
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	5e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	5e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	5e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	5e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	5e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	5e-04
pfam06512	230	pfam06512, Na_trans_assoc, Sodium ion transport-as	5e-04
pfam06512	230	pfam06512, Na_trans_assoc, Sodium ion transport-as	5e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	5e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	5e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	5e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	5e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	5e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	5e-04
PRK04335	313	PRK04335, PRK04335, cell division protein ZipA; Pr	5e-04
PRK14160	211	PRK14160, PRK14160, heat shock protein GrpE; Provi	5e-04
COG3064	387	COG3064, TolA, Membrane protein involved in colici	5e-04
COG3064	387	COG3064, TolA, Membrane protein involved in colici	5e-04
pfam09731	493	pfam09731, Mitofilin, Mitochondrial inner membrane	5e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-04
PRK08493	819	PRK08493, PRK08493, NADH dehydrogenase subunit G;	5e-04
pfam00012	598	pfam00012, HSP70, Hsp70 protein	5e-04
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	5e-04
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	5e-04
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	5e-04
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	5e-04
COG5192	1077	COG5192, BMS1, GTP-binding protein required for 40	5e-04
PTZ00254	249	PTZ00254, PTZ00254, 40S ribosomal protein SA; Prov	5e-04
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	6e-04
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	6e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-04
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	6e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	6e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	6e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	6e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	6e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	6e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	6e-04
pfam06512	230	pfam06512, Na_trans_assoc, Sodium ion transport-as	6e-04
pfam06512	230	pfam06512, Na_trans_assoc, Sodium ion transport-as	6e-04
TIGR03779	410	TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative	6e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	6e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	6e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	6e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	6e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	6e-04
PRK04335	313	PRK04335, PRK04335, cell division protein ZipA; Pr	6e-04
PRK05658	619	PRK05658, PRK05658, RNA polymerase sigma factor Rp	6e-04
COG5192	1077	COG5192, BMS1, GTP-binding protein required for 40	6e-04
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	6e-04
PRK14521	186	PRK14521, rpsP, 30S ribosomal protein S16; Provisi	6e-04
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	6e-04
pfam05262	489	pfam05262, Borrelia_P83, Borrelia P83/100 protein	6e-04
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	7e-04
COG5406	1001	COG5406, COG5406, Nucleosome binding factor SPN, S	7e-04
PLN03142	1033	PLN03142, PLN03142, Probable chromatin-remodeling	7e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	7e-04
pfam09073	424	pfam09073, BUD22, BUD22	7e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	7e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	7e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	7e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	7e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	7e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	7e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	7e-04
pfam06512	230	pfam06512, Na_trans_assoc, Sodium ion transport-as	7e-04
pfam09756	189	pfam09756, DDRGK, DDRGK domain	7e-04
PHA00435	306	PHA00435, PHA00435, capsid assembly protein	7e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	7e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	7e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	7e-04
COG5593	821	COG5593, COG5593, Nucleic-acid-binding protein pos	7e-04
PRK04335	313	PRK04335, PRK04335, cell division protein ZipA; Pr	7e-04
PRK04335	313	PRK04335, PRK04335, cell division protein ZipA; Pr	7e-04
TIGR00600	1034	TIGR00600, rad2, DNA excision repair protein (rad2	7e-04
COG3064	387	COG3064, TolA, Membrane protein involved in colici	7e-04
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	7e-04
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	7e-04
PRK14521	186	PRK14521, rpsP, 30S ribosomal protein S16; Provisi	7e-04
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	7e-04
COG5414	392	COG5414, COG5414, TATA-binding protein-associated	7e-04
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	7e-04
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	8e-04
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	8e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-04
PRK06007	542	PRK06007, fliF, flagellar MS-ring protein; Reviewe	8e-04
pfam06512	230	pfam06512, Na_trans_assoc, Sodium ion transport-as	8e-04
pfam06512	230	pfam06512, Na_trans_assoc, Sodium ion transport-as	8e-04
pfam09756	189	pfam09756, DDRGK, DDRGK domain	8e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	8e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-04
PRK08493	819	PRK08493, PRK08493, NADH dehydrogenase subunit G;	8e-04
pfam05340	565	pfam05340, DUF740, Protein of unknown function (DU	8e-04
PRK12903	925	PRK12903, secA, preprotein translocase subunit Sec	8e-04
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	8e-04
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	8e-04
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	8e-04
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	8e-04
COG5192	1077	COG5192, BMS1, GTP-binding protein required for 40	8e-04
pfam05262	489	pfam05262, Borrelia_P83, Borrelia P83/100 protein	8e-04
PRK06669	281	PRK06669, fliH, flagellar assembly protein H; Vali	8e-04
pfam04502	321	pfam04502, DUF572, Family of unknown function (DUF	8e-04
TIGR01651	600	TIGR01651, CobT, cobaltochelatase, CobT subunit	9e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	9e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	9e-04
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	9e-04
PRK14160	211	PRK14160, PRK14160, heat shock protein GrpE; Provi	9e-04
TIGR00600	1034	TIGR00600, rad2, DNA excision repair protein (rad2	9e-04
PRK08493	819	PRK08493, PRK08493, NADH dehydrogenase subunit G;	9e-04
PRK12903	925	PRK12903, secA, preprotein translocase subunit Sec	9e-04
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	9e-04
pfam03344	715	pfam03344, Daxx, Daxx Family	0.001
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	0.001
COG4547	620	COG4547, CobT, Cobalamin biosynthesis protein CobT	0.001
pfam06213	282	pfam06213, CobT, Cobalamin biosynthesis protein Co	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	0.001
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	0.001
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	0.001
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	0.001
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	0.001
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	0.001
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.001
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.001
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	0.001
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	0.001
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	0.001
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.001
pfam06512	230	pfam06512, Na_trans_assoc, Sodium ion transport-as	0.001
pfam06512	230	pfam06512, Na_trans_assoc, Sodium ion transport-as	0.001
pfam06512	230	pfam06512, Na_trans_assoc, Sodium ion transport-as	0.001
pfam06512	230	pfam06512, Na_trans_assoc, Sodium ion transport-as	0.001
TIGR03779	410	TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative	0.001
PHA00435	306	PHA00435, PHA00435, capsid assembly protein	0.001
PHA00435	306	PHA00435, PHA00435, capsid assembly protein	0.001
PHA00435	306	PHA00435, PHA00435, capsid assembly protein	0.001
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.001
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.001
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.001
COG5593	821	COG5593, COG5593, Nucleic-acid-binding protein pos	0.001
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	0.001
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	0.001
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	0.001
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	0.001
PRK04335	313	PRK04335, PRK04335, cell division protein ZipA; Pr	0.001
PRK04335	313	PRK04335, PRK04335, cell division protein ZipA; Pr	0.001
PRK14160	211	PRK14160, PRK14160, heat shock protein GrpE; Provi	0.001
TIGR00600	1034	TIGR00600, rad2, DNA excision repair protein (rad2	0.001
COG3064	387	COG3064, TolA, Membrane protein involved in colici	0.001
COG3064	387	COG3064, TolA, Membrane protein involved in colici	0.001
pfam09731	493	pfam09731, Mitofilin, Mitochondrial inner membrane	0.001
pfam09731	493	pfam09731, Mitofilin, Mitochondrial inner membrane	0.001
pfam09731	493	pfam09731, Mitofilin, Mitochondrial inner membrane	0.001
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	0.001
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	0.001
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	0.001
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	0.001
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	0.001
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	0.001
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	0.001
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	0.001
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	0.001
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	0.001
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	0.001
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	0.001
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	0.001
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	0.001
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
pfam05340	565	pfam05340, DUF740, Protein of unknown function (DU	0.001
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	0.001
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	0.001
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	0.001
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	0.001
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	0.001
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	0.001
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	0.001
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	0.001
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	0.001
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	0.001
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	0.001
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	0.001
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	0.001
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	0.001
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	0.001
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	0.001
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	0.001
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	0.001
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	0.001
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	0.001
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	0.001
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	0.001
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	0.001
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	0.001
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	0.001
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	0.001
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	0.001
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	0.001
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	0.001
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	0.001
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	0.001
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	0.001
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	0.001
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	0.001
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	0.001
COG5192	1077	COG5192, BMS1, GTP-binding protein required for 40	0.001
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	0.001
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	0.001
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	0.001
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	0.001
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	0.001
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	0.001
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	0.001
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	0.001
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	0.001
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	0.001
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	0.001
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	0.001
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	0.001
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	0.001
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	0.001
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	0.001
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	0.001
PRK14521	186	PRK14521, rpsP, 30S ribosomal protein S16; Provisi	0.001
PRK14521	186	PRK14521, rpsP, 30S ribosomal protein S16; Provisi	0.001
PRK14521	186	PRK14521, rpsP, 30S ribosomal protein S16; Provisi	0.001
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.001
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.001
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.001
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.001
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.001
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.001
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.001
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.001
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.001
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.001
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.001
COG5414	392	COG5414, COG5414, TATA-binding protein-associated	0.001
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	0.001
PLN02372	455	PLN02372, PLN02372, violaxanthin de-epoxidase	0.001
PLN02372	455	PLN02372, PLN02372, violaxanthin de-epoxidase	0.001
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.001
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.001
pfam09184	285	pfam09184, PPP4R2, PPP4R2	0.001
COG5137	279	COG5137, COG5137, Histone chaperone involved in ge	0.001
pfam14283	213	pfam14283, DUF4366, Domain of unknown function (DU	0.001
PRK05687	246	PRK05687, fliH, flagellar assembly protein H; Vali	0.001
cd10809	340	cd10809, GH38N_AMII_GMII_SfManIII_like, N-terminal	0.002
pfam03985	431	pfam03985, Paf1, Paf1	0.002
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	0.002
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.002
pfam06213	282	pfam06213, CobT, Cobalamin biosynthesis protein Co	0.002
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	0.002
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	0.002
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	0.002
pfam06512	230	pfam06512, Na_trans_assoc, Sodium ion transport-as	0.002
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.002
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.002
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.002
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.002
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	0.002
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	0.002
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	0.002
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	0.002
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	0.002
PRK14160	211	PRK14160, PRK14160, heat shock protein GrpE; Provi	0.002
PRK14160	211	PRK14160, PRK14160, heat shock protein GrpE; Provi	0.002
TIGR00600	1034	TIGR00600, rad2, DNA excision repair protein (rad2	0.002
TIGR00600	1034	TIGR00600, rad2, DNA excision repair protein (rad2	0.002
TIGR00600	1034	TIGR00600, rad2, DNA excision repair protein (rad2	0.002
COG3064	387	COG3064, TolA, Membrane protein involved in colici	0.002
COG3064	387	COG3064, TolA, Membrane protein involved in colici	0.002
pfam09731	493	pfam09731, Mitofilin, Mitochondrial inner membrane	0.002
pfam09731	493	pfam09731, Mitofilin, Mitochondrial inner membrane	0.002
pfam09731	493	pfam09731, Mitofilin, Mitochondrial inner membrane	0.002
pfam09731	493	pfam09731, Mitofilin, Mitochondrial inner membrane	0.002
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	0.002
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
PRK08493	819	PRK08493, PRK08493, NADH dehydrogenase subunit G;	0.002
PRK08493	819	PRK08493, PRK08493, NADH dehydrogenase subunit G;	0.002
pfam05340	565	pfam05340, DUF740, Protein of unknown function (DU	0.002
pfam05340	565	pfam05340, DUF740, Protein of unknown function (DU	0.002
pfam05340	565	pfam05340, DUF740, Protein of unknown function (DU	0.002
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	0.002
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	0.002
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	0.002
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	0.002
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	0.002
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	0.002
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	0.002
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	0.002
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	0.002
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	0.002
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	0.002
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	0.002
COG5192	1077	COG5192, BMS1, GTP-binding protein required for 40	0.002
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	0.002
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	0.002
PRK14521	186	PRK14521, rpsP, 30S ribosomal protein S16; Provisi	0.002
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.002
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.002
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.002
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.002
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.002
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.002
pfam05262	489	pfam05262, Borrelia_P83, Borrelia P83/100 protein	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.002
PRK06669	281	PRK06669, fliH, flagellar assembly protein H; Vali	0.002
PRK06669	281	PRK06669, fliH, flagellar assembly protein H; Vali	0.002
PLN02372	455	PLN02372, PLN02372, violaxanthin de-epoxidase	0.002
PLN02372	455	PLN02372, PLN02372, violaxanthin de-epoxidase	0.002
PLN02372	455	PLN02372, PLN02372, violaxanthin de-epoxidase	0.002
PLN02372	455	PLN02372, PLN02372, violaxanthin de-epoxidase	0.002
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.002
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.002
pfam14283	213	pfam14283, DUF4366, Domain of unknown function (DU	0.002
cd11486	635	cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporte	0.002
pfam04050	171	pfam04050, Upf2, Up-frameshift suppressor 2	0.002
pfam04050	171	pfam04050, Upf2, Up-frameshift suppressor 2	0.002
pfam04050	171	pfam04050, Upf2, Up-frameshift suppressor 2	0.002
pfam04050	171	pfam04050, Upf2, Up-frameshift suppressor 2	0.002
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.002
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
pfam07222	243	pfam07222, PBP_sp32, Proacrosin binding protein sp	0.002
pfam04111	356	pfam04111, APG6, Autophagy protein Apg6	0.002
cd02988	192	cd02988, Phd_like_VIAF, Phosducin (Phd)-like famil	0.002
pfam04006	613	pfam04006, Mpp10, Mpp10 protein	0.002
PLN02847	633	PLN02847, PLN02847, triacylglycerol lipase	0.002
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.002
cd10791	254	cd10791, GH38N_AMII_like_1, N-terminal catalytic d	0.002
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.002
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	0.003
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	0.003
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
pfam04615	728	pfam04615, Utp14, Utp14 protein	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	0.003
pfam09073	424	pfam09073, BUD22, BUD22	0.003
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.003
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.003
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	0.003
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	0.003
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	0.003
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	0.003
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	0.003
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	0.003
PRK04335	313	PRK04335, PRK04335, cell division protein ZipA; Pr	0.003
COG3064	387	COG3064, TolA, Membrane protein involved in colici	0.003
COG3064	387	COG3064, TolA, Membrane protein involved in colici	0.003
PRK05658	619	PRK05658, PRK05658, RNA polymerase sigma factor Rp	0.003
pfam09731	493	pfam09731, Mitofilin, Mitochondrial inner membrane	0.003
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	0.003
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	0.003
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	0.003
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	0.003
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
pfam00012	598	pfam00012, HSP70, Hsp70 protein	0.003
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	0.003
COG5192	1077	COG5192, BMS1, GTP-binding protein required for 40	0.003
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	0.003
PRK14521	186	PRK14521, rpsP, 30S ribosomal protein S16; Provisi	0.003
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.003
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.003
pfam05262	489	pfam05262, Borrelia_P83, Borrelia P83/100 protein	0.003
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	0.003
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	0.003
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	0.003
PRK06669	281	PRK06669, fliH, flagellar assembly protein H; Vali	0.003
pfam04502	321	pfam04502, DUF572, Family of unknown function (DUF	0.003
pfam04502	321	pfam04502, DUF572, Family of unknown function (DUF	0.003
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.003
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.003
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.003
pfam04050	171	pfam04050, Upf2, Up-frameshift suppressor 2	0.003
pfam04050	171	pfam04050, Upf2, Up-frameshift suppressor 2	0.003
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.003
cd02988	192	cd02988, Phd_like_VIAF, Phosducin (Phd)-like famil	0.003
pfam04006	613	pfam04006, Mpp10, Mpp10 protein	0.003
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.003
COG0576	193	COG0576, GrpE, Molecular chaperone GrpE (heat shoc	0.003
COG0576	193	COG0576, GrpE, Molecular chaperone GrpE (heat shoc	0.003
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	0.003
COG5019	373	COG5019, CDC3, Septin family protein [Cell divisio	0.003
COG4547	620	COG4547, CobT, Cobalamin biosynthesis protein CobT	0.004
pfam04889	241	pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont	0.004
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	0.004
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	0.004
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	0.004
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	0.004
COG5167	776	COG5167, VID27, Protein involved in vacuole import	0.004
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.004
COG5593	821	COG5593, COG5593, Nucleic-acid-binding protein pos	0.004
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	0.004
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	0.004
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	0.004
pfam03896	281	pfam03896, TRAP_alpha, Translocon-associated prote	0.004
TIGR00600	1034	TIGR00600, rad2, DNA excision repair protein (rad2	0.004
COG3064	387	COG3064, TolA, Membrane protein involved in colici	0.004
COG3064	387	COG3064, TolA, Membrane protein involved in colici	0.004
pfam11748	115	pfam11748, DUF3306, Protein of unknown function (D	0.004
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	0.004
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004
pfam05340	565	pfam05340, DUF740, Protein of unknown function (DU	0.004
pfam00012	598	pfam00012, HSP70, Hsp70 protein	0.004
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	0.004
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.004
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.004
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	0.004
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004
PLN02372	455	PLN02372, PLN02372, violaxanthin de-epoxidase	0.004
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.004
pfam09184	285	pfam09184, PPP4R2, PPP4R2	0.004
pfam09184	285	pfam09184, PPP4R2, PPP4R2	0.004
pfam09184	285	pfam09184, PPP4R2, PPP4R2	0.004
COG5137	279	COG5137, COG5137, Histone chaperone involved in ge	0.004
pfam14283	213	pfam14283, DUF4366, Domain of unknown function (DU	0.004
pfam04050	171	pfam04050, Upf2, Up-frameshift suppressor 2	0.004
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.004
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.004
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.004
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.004
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.004
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.004
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.004
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.004
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.004
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.004
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.004
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.004
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.004
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.004
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.004
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.004
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.004
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.004
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.004
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.004
pfam04006	613	pfam04006, Mpp10, Mpp10 protein	0.004
PLN02847	633	PLN02847, PLN02847, triacylglycerol lipase	0.004
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.004
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.004
COG0576	193	COG0576, GrpE, Molecular chaperone GrpE (heat shoc	0.004
COG0576	193	COG0576, GrpE, Molecular chaperone GrpE (heat shoc	0.004
COG0576	193	COG0576, GrpE, Molecular chaperone GrpE (heat shoc	0.004
COG0576	193	COG0576, GrpE, Molecular chaperone GrpE (heat shoc	0.004
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	0.004
PRK14906	1460	PRK14906, PRK14906, DNA-directed RNA polymerase su	0.004
pfam11831	363	pfam11831, Myb_Cef, pre-mRNA splicing factor compo	0.004

>gnl|CDD|212120 cd10809, GH38N_AMII_GMII_SfManIII_like, N-terminal catalytic domain of Golgi alpha-mannosidase II, Spodoptera frugiperda Sf9 alpha-mannosidase III, and similar proteins; glycoside hydrolase family 38 (GH38)

 Score =  183 bits (467), Expect = 3e-56
 Identities = 64/93 (68%), Positives = 73/93 (78%)

Query: 72  LRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKT 131
           L+VFVVPHSHNDPGW +TFE Y+   TK ILD MV KL +N K KFIWAE+S+L  WW  
Sbjct: 2   LKVFVVPHSHNDPGWIKTFEEYYQDQTKHILDNMVDKLSKNPKMKFIWAEISFLERWWDD 61

Query: 132 ISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANS 164
            S D K+ V+ LVK+GQLEIVTGGWVMTDEANS
Sbjct: 62  ASPDKKEAVKKLVKNGQLEIVTGGWVMTDEANS 94

This subfamily is represented by Golgi alpha-mannosidase II (GMII, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A1), a monomeric, membrane-anchored class II alpha-mannosidase existing in the Golgi apparatus of eukaryotes. GMII plays a key role in the N-glycosylation pathway. It catalyzes the hydrolysis of the terminal both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. GMII is activated by zinc or cobalt ions and is strongly inhibited by swainsonine. Inhibition of GMII provides a route to block cancer-induced changes in cell surface oligosaccharide structures. GMII has a pH optimum of 5.5-6.0, which is intermediate between those of acidic (lysosomal alpha-mannosidase) and neutral (ER/cytosolic alpha-mannosidase) enzymes. GMII is a retaining glycosyl hydrolase of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex; two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. This subfamily also includes human alpha-mannosidase 2x (MX, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A2). MX is enzymatically and functionally very similar to GMII, and is thought to also function in the N-glycosylation pathway. Also found in this subfamily is class II alpha-mannosidase encoded by Spodoptera frugiperda Sf9 cell. This alpha-mannosidase is an integral membrane glycoprotein localized in the Golgi apparatus. It shows high sequence homology with mammalian Golgi alpha-mannosidase II(GMII). It can hydrolyze p-nitrophenyl alpha-D-mannopyranoside (pNP-alpha-Man), and it is inhibited by swainsonine. However, the Sf9 enzyme is stimulated by cobalt and can hydrolyze (Man)5(GlcNAc)2 to (Man)3(GlcNAc)2, but it cannot hydrolyze GlcNAc(Man)5(GlcNAc)2, which is distinct from that of GMII. Thus, this enzyme has been designated as Sf9 alpha-mannosidase III (SfManIII). It probably functions in an alternate N-glycan processing pathway in Sf9 cells. Length = 340

>gnl|CDD|178304 PLN02701, PLN02701, alpha-mannosidase

 Score =  169 bits (429), Expect = 2e-47
 Identities = 69/125 (55%), Positives = 83/125 (66%), Gaps = 2/125 (1%)

Query: 40  DEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTK 99
           D IEF + +GG W QGW +      E D E L +VFVVPHSHNDPGW  T E Y+   ++
Sbjct: 10  DRIEFLDKDGGAWKQGWRVKYR-GDEWDREKL-KVFVVPHSHNDPGWILTVEEYYQEQSR 67

Query: 100 SILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMT 159
            ILDT+V  L ++ +RKFIW EMSYL  WW+  S   K+    LVK+GQLEIV GGWVM 
Sbjct: 68  HILDTIVESLSKDPRRKFIWEEMSYLERWWRDASPSKKEAFTKLVKNGQLEIVGGGWVMN 127

Query: 160 DEANS 164
           DEANS
Sbjct: 128 DEANS 132

Length = 1050

>gnl|CDD|212095 cd00451, GH38N_AMII_euk, N-terminal catalytic domain of eukaryotic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38)

 Score =  147 bits (374), Expect = 3e-43
 Identities = 48/93 (51%), Positives = 64/93 (68%)

Query: 72  LRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKT 131
           L V ++PHSH D GW +TF+ Y+    KSILD++V  L  + +RKFIWAE+ +L  WW+ 
Sbjct: 1   LNVHLIPHSHCDVGWLKTFDEYYNGDVKSILDSVVKALNNDPERKFIWAEIGFLERWWED 60

Query: 132 ISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANS 164
              DTK + + LVK+GQLE V GGWVM DEA +
Sbjct: 61  QGNDTKQQFKKLVKNGQLEFVGGGWVMNDEACT 93

The family corresponds to a group of eukaryotic class II alpha-mannosidases (AlphaMII), which contain Golgi alpha-mannosidases II (GMII), the major broad specificity lysosomal alpha-mannosidases (LAM, MAN2B1), the noval core-specific lysosomal alpha 1,6-mannosidases (Epman, MAN2B2), and similar proteins. GMII catalyzes the hydrolysis of the terminal both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2 (GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. LAM is a broad specificity exoglycosidase hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha 1,6-mannosidic linkages from numerous high mannose type oligosaccharides. Different from LAM, Epman can efficiently cleave only the alpha 1,6-linked mannose residue from (Man)3GlcNAc, but not (Man)3(GlcNAc)2 or other larger high mannose oligosaccharides, in the core of N-linked glycans. Members in this family are retaining glycosyl hydrolases of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex. Two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. Length = 258

>gnl|CDD|212131 cd11666, GH38N_Man2A1, N-terminal catalytic domain of Golgi alpha-mannosidase II and similar proteins; glycoside hydrolase family 38 (GH38)

 Score =  140 bits (353), Expect = 2e-39
 Identities = 56/93 (60%), Positives = 71/93 (76%)

Query: 72  LRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKT 131
           L+VFVVPHSHNDPGW +TF+ YF   T+ IL+ MV KL E+ +RKFIW+E+SY + WW  
Sbjct: 2   LQVFVVPHSHNDPGWLKTFDDYFRDQTQHILNNMVLKLKEDSRRKFIWSEISYFAKWWDI 61

Query: 132 ISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANS 164
           I    KD V+ L+++GQLEIVTGGWVM DEA +
Sbjct: 62  IDGQKKDAVKRLIENGQLEIVTGGWVMPDEATA 94

This subfamily is represented by Golgi alpha-mannosidase II (GMII, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A1), a monomeric, membrane-anchored class II alpha-mannosidase existing in the Golgi apparatus of eukaryotes. GMII plays a key role in the N-glycosylation pathway. It catalyzes the hydrolysis of the terminal of both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. GMII is activated by zinc or cobalt ions and is strongly inhibited by swainsonine. Inhibition of GMII provides a route to block cancer-induced changes in cell surface oligosaccharide structures. GMII has a pH optimum of 5.5-6.0, which is intermediate between those of acidic (lysosomal alpha-mannosidase) and neutral (ER/cytosolic alpha-mannosidase) enzymes. GMII is a retaining glycosyl hydrolase of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex; two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. Length = 344

>gnl|CDD|212132 cd11667, GH38N_Man2A2, N-terminal catalytic domain of Golgi alpha-mannosidase IIx, and similar proteins; glycoside hydrolase family 38 (GH38)

 Score =  138 bits (350), Expect = 7e-39
 Identities = 54/93 (58%), Positives = 71/93 (76%)

Query: 72  LRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKT 131
           L+VFVVPHSHNDPGW +TF+ Y+   T+ IL++MV KL E+ +R+FIW+E+S+ S WW  
Sbjct: 2   LQVFVVPHSHNDPGWIKTFDKYYYDQTQHILNSMVVKLQEDPRRRFIWSEISFFSKWWDN 61

Query: 132 ISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANS 164
           I+   +  VR LV +GQLE+ TGGWVM DEANS
Sbjct: 62  INAQKRAAVRRLVGNGQLEMATGGWVMPDEANS 94

This subfamily is represented by human alpha-mannosidase 2x (MX, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A2). MX is enzymatically and functionally very similar to GMII (found in another subfamily), and as an isoenzyme of GMII. It is thought to also function in the N-glycosylation pathway. MX specifically hydrolyzes the same oligosaccharide substrate as does MII. It specifically removes two mannosyl residues from GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine). Length = 344

>gnl|CDD|212121 cd10810, GH38N_AMII_LAM_like, N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38)

 Score =  129 bits (326), Expect = 6e-36
 Identities = 47/99 (47%), Positives = 67/99 (67%), Gaps = 8/99 (8%)

Query: 72  LRVFVVPHSHNDPGWKQTFESYFVHSTKS--------ILDTMVTKLLENEKRKFIWAEMS 123
           L V +VPH+H+D GW +T + Y+  S  S        ILD+++ +LL+N  RKFI+ E++
Sbjct: 1   LNVHLVPHTHDDVGWLKTVDQYYYGSNNSIQHAGVQYILDSVIEELLKNPDRKFIYVEIA 60

Query: 124 YLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEA 162
           + S WW+  SEDT+ KV+ LVK+GQLE + GGW M DEA
Sbjct: 61  FFSRWWREQSEDTRQKVKKLVKNGQLEFINGGWCMNDEA 99

The subfamily is represented by lysosomal alpha-mannosidase (LAM, Man2B1, EC 3.2.1.114), which is a broad specificity exoglycosidase hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha 1,6-mannosidic linkages from numerous high mannose type oligosaccharides. LAM is expressed in all tissues and in many species. In mammals, the absence of LAM can cause the autosomal recessive disease alpha-mannosidosis. LAM has an acidic pH optimum at 4.0-4.5. It is stimulated by zinc ion and is inhibited by cobalt ion and plant alkaloids, such as swainsonine (SW). LAM catalyzes hydrolysis by a double displacement mechanism in which a glycosyl-enzyme intermediate is formed and hydrolyzed via oxacarbenium ion-like transition states. A carboxylic acid in the active site acts as the catalytic nucleophile in the formation of the covalent intermediate while a second carboxylic acid acts as a general acid catalyst. The same residue is thought to assist in the hydrolysis (deglycosylation) step, this time acting as a general base. Length = 278

>gnl|CDD|216284 pfam01074, Glyco_hydro_38, Glycosyl hydrolases family 38 N-terminal domain

 Score =  113 bits (286), Expect = 4e-30
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 74  VFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTIS 133
           V +V HSH D GW  T +       +     ++  L    + +FI +E  +   WW+   
Sbjct: 2   VHLVGHSHIDVGWLWTVDET-RRKVQRTFSNVLKLLDRYPEFRFIQSEAQFYEWWWEDQP 60

Query: 134 EDTKDKVRLLVKSGQLEIVTGGWVMTDEANS 164
           E    K++ LV  G+LE V GGWV  DE   
Sbjct: 61  E-LFKKIKKLVAEGRLEPVGGGWVEPDENLP 90

Glycosyl hydrolases are key enzymes of carbohydrate metabolism. Length = 269

>gnl|CDD|212098 cd10786, GH38N_AMII_like, N-terminal catalytic domain of class II alpha-mannosidases and similar proteins; glycoside hydrolase family 38 (GH38)

 Score =  100 bits (251), Expect = 3e-25
 Identities = 39/91 (42%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 74  VFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTIS 133
           V +VPHSH D GW QTFE Y+  + K+ILD  +  L  N + KF+  E+  L  +W    
Sbjct: 2   VHLVPHSHYDVGWLQTFEQYYQINFKAILDKALRLLDANPEYKFLIEEVILLERYWDV-R 60

Query: 134 EDTKDKVRLLVKSGQLEIVTGGWVMTDEANS 164
            D K K++  V+SG+LEI  GG+VM D    
Sbjct: 61  PDLKAKLKQAVRSGRLEIAGGGYVMPDTNLP 91

Alpha-mannosidases (EC 3.2.1.24) are extensively found in eukaryotes and play important roles in the processing of newly formed N-glycans and in degradation of mature glycoproteins. A deficiency of this enzyme causes the lysosomal storage disease alpha-mannosidosis. Many bacterial and archaeal species also possess putative alpha-mannosidases, but their activity and specificity is largely unknown. Based on different functional characteristics and sequence homology, alpha-mannosidases have been organized into two classes (class I, belonging to glycoside hydrolase family 47, and class II, belonging to glycoside hydrolase family 38). Members of this family corresponds to class II alpha-mannosidases (alphaMII), which contain intermediate Golgi alpha-mannosidases II, acidic lysosomal alpha-mannosidases, animal sperm and epididymal alpha -mannosidases, neutral ER/cytosolic alpha-mannosidases, and some putative prokaryotic alpha-mannosidases. AlphaMII possess a-1,3, a-1,6, and a-1,2 hydrolytic activity, and catalyzes the degradation of N-linked oligosaccharides. The N-terminal catalytic domain of alphaMII adopts a structure consisting of parallel 7-stranded beta/alpha barrel. Members in this family are retaining glycosyl hydrolases of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex. Two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. Length = 251

>gnl|CDD|212122 cd10811, GH38N_AMII_Epman_like, N-terminal catalytic domain of mammalian core-specific lysosomal alpha 1,6-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38)

 Score = 85.7 bits (212), Expect = 2e-19
 Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 1/92 (1%)

Query: 72  LRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKT 131
           ++ FV+PHSH D GW  T +        ++  ++V +L+  ++R+FI  E  +  LWW  
Sbjct: 1   IQAFVIPHSHMDVGWVYTVQESMHAYAANVYTSVVEELMRGKQRRFIAVEQEFFRLWWDG 60

Query: 132 ISEDT-KDKVRLLVKSGQLEIVTGGWVMTDEA 162
           ++ D  K +VR L+  G+LE V GG VM DEA
Sbjct: 61  VATDKQKQQVRQLLSEGRLEFVIGGQVMHDEA 92

The subfamily is represented by a novel human core-specific lysosomal alpha 1,6-mannosidase (Epman, Man2B2) and similar proteins. Although it was previously named as epididymal alpha-mannosidase, Epman has a broadly distributed transcript expression profile. Different from the major broad specificity lysosomal alpha-mannosidases (LAM, MAN2B1), Epman is not associated with genetic alpha-mannosidosis that is caused by the absence of LAM. Furthermore, Epman has unique substrate specificity. It can efficiently cleave only the alpha 1,6-linked mannose residue from (Man)3GlcNAc, but not (Man)3(GlcNAc)2 or other larger high mannose oligosaccharides, in the core of N-linked glycans. In contrast, the major LAM can cleave all of the alpha-linked mannose residues from high mannose oligosaccharides except the core alpha 1,6-linked mannose residue. Moreover, it is suggested that the catalytic activity of Epman is dependent on prior action by di-N-acetyl-chitobiase (chitobiase), which indicates there is a functional cooperation between these two enzymes for the full and efficient catabolism of mammalian lysosomal N-glycan core structures. Epman has an acidic pH optimum. It is strongly stimulated by cobalt or zinc ions and strongly inhibited by furanose analogues swainsonine (SW) and 1,4-dideoxy-1,4-imino-d-mannitol (DIM). Length = 326

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 73.9 bits (181), Expect = 8e-15
 Identities = 40/88 (45%), Positives = 57/88 (64%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            E  E++E E + E + ++ E ++E  E+E   E + E +++E+  +     +  + EEE
Sbjct: 807 TEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEE 866

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           EEEEEEEEE EEEEEEEEEEEEE EE L
Sbjct: 867 EEEEEEEEEEEEEEEEEEEEEEENEEPL 894

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 72.3 bits (177), Expect = 3e-14
 Identities = 41/105 (39%), Positives = 61/105 (58%)

Query: 170 NSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 229
           + G+   + H       E++E E + E + ++ E ++E  E+E   E + E +++E+  +
Sbjct: 794 DEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVD 853

Query: 230 EEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEALW 274
                +  + EEEEEEEEEEEEEEE EEEEEEEEEE EE     W
Sbjct: 854 GGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEW 898

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 71.6 bits (176), Expect = 4e-14
 Identities = 34/86 (39%), Positives = 66/86 (76%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           +EEEE+ +E  ++ ++E E ++++     + EE+EEEEE+  ++E+EE+++++ EEEEE+
Sbjct: 289 DEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEED 348

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
            +  +EEE+ E+E+ ++E++EEEEEE
Sbjct: 349 VDLSDEEEDEEDEDSDDEDDEEEEEE 374

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 71.6 bits (176), Expect = 5e-14
 Identities = 37/97 (38%), Positives = 72/97 (74%), Gaps = 4/97 (4%)

Query: 180 MMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEE----EEEEEEEEEEEEEEEEEEEEEEEE 235
           M    +++EEEE+ +E  ++ ++E E ++++     + EE+EEEEE+  ++E+EE+++++
Sbjct: 282 MRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDD 341

Query: 236 EEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            EEEEE+ +  +EEE+EE+ + ++E++EEEEEEE+E 
Sbjct: 342 LEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEK 378

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|212097 cd10785, GH38-57_N_LamB_YdjC_SF, Catalytic domain of glycoside hydrolase (GH) families 38 and 57, lactam utilization protein LamB/YcsF family proteins, YdjC-family proteins, and similar proteins

 Score = 66.5 bits (162), Expect = 3e-13
 Identities = 30/87 (34%), Positives = 49/87 (56%)

Query: 75  FVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISE 134
           F+  HSHN   W QTFE ++  +TK+    ++     N +  F  A +SY +L++  + E
Sbjct: 1   FINAHSHNPYVWIQTFEEWYFEATKATYIPLLMHFHRNFEMSFNIAPISYEALFYHDLGE 60

Query: 135 DTKDKVRLLVKSGQLEIVTGGWVMTDE 161
           + K +++ + K+GQLEI T G    DE
Sbjct: 61  NIKLQMKSIQKNGQLEIGTHGATHPDE 87

The superfamily possesses strong sequence similarities across a wide range of all three kingdoms of life. It mainly includes four families, glycoside hydrolases family 38 (GH38), heat stable retaining glycoside hydrolases family 57 (GH57), lactam utilization protein LamB/YcsF family, and YdjC-family. The GH38 family corresponds to class II alpha-mannosidases (alphaMII, EC 3.2.1.24), which contain intermediate Golgi alpha-mannosidases II, acidic lysosomal alpha-mannosidases, animal sperm and epididymal alpha -mannosidases, neutral ER/cytosolic alpha-mannosidases, and some putative prokaryotic alpha-mannosidases. AlphaMII possess a-1,3, a-1,6, and a-1,2 hydrolytic activity, and catalyzes the degradation of N-linked oligosaccharides by employing a two-step mechanism involving the formation of a covalent glycosyl enzyme complex. GH57 is a purely prokaryotic family with the majority of thermostable enzymes from extremophiles (many of them are archaeal hyperthermophiles), which exhibit the enzyme specificities of alpha-amylase (EC 3.2.1.1), 4-alpha-glucanotransferase (EC 2.4.1.25), amylopullulanase (EC 3.2.1.1/41), and alpha-galactosidase (EC 3.2.1.22). This family also includes many hypothetical proteins with uncharacterized activity and specificity. GH57 cleaves alpha-glycosidic bond by employing a retaining mechanism, which involves a glycosyl-enzyme intermediate, allowing transglycosylation. Although the exact molecular function of LamB/YcsF family and YdjC-family remains unclear, they show high sequence and structure homology to the members of GH38 and GH57. Their catalytic domains adopt a similar parallel 7-stranded beta/alpha barrel, which is remotely related to catalytic NodB homology domain of the carbohydrate esterase 4 superfamily. Length = 203

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 68.1 bits (166), Expect = 9e-13
 Identities = 43/128 (33%), Positives = 67/128 (52%)

Query: 147 GQLEIVTGGWVMTDEANSCNVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEE 206
           G+++    G +  DE     V     +            E + ++ E ++E  E+E   E
Sbjct: 781 GEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAE 840

Query: 207 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEE 266
            + E +++E+  +     +  + EEEEEEEEEEEEEEEEEEEEEEEEE  EE    E  E
Sbjct: 841 NQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPE 900

Query: 267 EEEEEALW 274
             +++A++
Sbjct: 901 TRQKQAIY 908

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 65.4 bits (160), Expect = 5e-12
 Identities = 33/88 (37%), Positives = 65/88 (73%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           +E E ++++     + EE+EEEEE+  ++E+EE+++++ EEEEE+ +  +EEE+EE+E+ 
Sbjct: 304 DEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDS 363

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           ++E++EEEE EE+E+++++  E     L
Sbjct: 364 DDEDDEEEEEEEKEKKKKKSAESTRSEL 391

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 65.0 bits (159), Expect = 8e-12
 Identities = 32/87 (36%), Positives = 66/87 (75%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           ++E E ++++     + EE+EEEEE+  ++E+EE+++++ EEEEE+ +  +EEE+EE+E+
Sbjct: 303 DDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDED 362

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            ++E++EEE EEE+E+++++  E   +
Sbjct: 363 SDDEDDEEEEEEEKEKKKKKSAESTRS 389

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 65.0 bits (159), Expect = 8e-12
 Identities = 33/85 (38%), Positives = 63/85 (74%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
           F  ++++     + EE+EEEEE+  ++E+EE+++++ EEEEE+ +  +EEE+EE+E+ ++
Sbjct: 306 FEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDD 365

Query: 243 EEEEEEEEEEEEGEEEEEEEEEEEE 267
           E++EEEEEEE+E ++++  E    E
Sbjct: 366 EDDEEEEEEEKEKKKKKSAESTRSE 390

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 36/100 (36%), Positives = 67/100 (67%)

Query: 160 DEANSCNVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 219
           +E +S   +D+            F   + EE+EEEEE+  ++E+EE+++++ EEEEE+ +
Sbjct: 291 EEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVD 350

Query: 220 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEE 259
             +EEE+EE+E+ ++E++EEEEEEE+E+++++  E    E
Sbjct: 351 LSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSE 390

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 31/85 (36%), Positives = 64/85 (75%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
           ++ ++++     + EE+EEEEE+  ++E+EE+++++ EEEEE+ +  +EEE+EE+E+ ++
Sbjct: 306 FEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDD 365

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEE 268
           E++EEEEEEE+ +++++  E    E
Sbjct: 366 EDDEEEEEEEKEKKKKKSAESTRSE 390

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 36/88 (40%), Positives = 60/88 (68%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KE E+  E +++++EEEE E EE+E+ ++E E  + E ++E E  + E+EEE++E  ++ 
Sbjct: 86  KEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKA 145

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           +E+ +EE  E +EEE  EEEE E E+E 
Sbjct: 146 KEDSDEELSEEDEEEAAEEEEAEAEKEK 173

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 36/108 (33%), Positives = 64/108 (59%), Gaps = 13/108 (12%)

Query: 185 KEEEEEEEEEEE-------------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 231
           K EEE  +EE E               EEE++EEEE+ +E  ++ ++E E ++++     
Sbjct: 258 KTEEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLG 317

Query: 232 EEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEALWGYADM 279
           + EE+EEEEE+  ++E+EE++++  EEEEE+ +  +EEE+     +D 
Sbjct: 318 QGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDD 365

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 36/89 (40%), Positives = 63/89 (70%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
           +KEEE +++E E+  E +++++EEEE E EE+E+ ++E E  + E ++E E  + E+EEE
Sbjct: 78  WKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEE 137

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           ++E  ++ +E+ +EE  EE+EEE  EEE 
Sbjct: 138 KDEAAKKAKEDSDEELSEEDEEEAAEEEE 166

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 35/88 (39%), Positives = 60/88 (68%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K+E E+  E +++++EEEE E EE+E+ ++E E  + E ++E E  + E+EEE++E  ++
Sbjct: 85  KKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKK 144

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            +E+ +EE   E+EEE  EEEE E E+ 
Sbjct: 145 AKEDSDEELSEEDEEEAAEEEEAEAEKE 172

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 36/88 (40%), Positives = 61/88 (69%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K++E E+  E +++++EEEE E EE+E+ ++E E  + E ++E E  + E+EEE++E  +
Sbjct: 84  KKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAK 143

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           + +E+ +EE  EE+EEE  EEEE E E 
Sbjct: 144 KAKEDSDEELSEEDEEEAAEEEEAEAEK 171

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 61.6 bits (150), Expect = 5e-11
 Identities = 37/107 (34%), Positives = 66/107 (61%)

Query: 166 NVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 225
            V D     ++L       ++++E E+  E +++++EEEE E EE+E+ ++E E  + E 
Sbjct: 64  EVVDGIPGLELLEKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVES 123

Query: 226 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           ++E E  + E+EEE++E  ++ +E+ +EE  EE+EEE  EEEE E  
Sbjct: 124 DKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAE 170

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 62.6 bits (152), Expect = 5e-11
 Identities = 45/89 (50%), Positives = 53/89 (59%)

Query: 182 PFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
           P    +E EEEE  EEEEEEEEEEEEEE+E EEEE E+EEEEEE E +   EEE E   E
Sbjct: 432 PSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSE 491

Query: 242 EEEEEEEEEEEEEGEEEEEEEEEEEEEEE 270
            + + EE EE+ E    E        E +
Sbjct: 492 GDGDGEEPEEDAERRNSEMAGISRMSEGQ 520

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 61.6 bits (150), Expect = 6e-11
 Identities = 36/88 (40%), Positives = 61/88 (69%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           + E+  E +++++EEEE E EE+E+ ++E E  + E ++E E  + E+EEE++E  ++ +
Sbjct: 87  EAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAK 146

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E+ +EE  EE EEE  EEEE E E+E+A
Sbjct: 147 EDSDEELSEEDEEEAAEEEEAEAEKEKA 174

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 62.2 bits (151), Expect = 6e-11
 Identities = 45/80 (56%), Positives = 54/80 (67%)

Query: 200 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEE 259
           +E EEEE  EEEEEEEEEEEEEE+E EEEE E+EEEEEE E +   EEE E   EG+ + 
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDG 496

Query: 260 EEEEEEEEEEEEALWGYADM 279
           EE EE+ E     + G + M
Sbjct: 497 EEPEEDAERRNSEMAGISRM 516

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 61.9 bits (150), Expect = 8e-11
 Identities = 44/78 (56%), Positives = 51/78 (65%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEG 255
           +E EEEE  EEEEEEEEEEEEEE+E EEEE E+EEEEEE E +   EEE E   E + +G
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDG 496

Query: 256 EEEEEEEEEEEEEEEEAL 273
           EE EE+ E    E     
Sbjct: 497 EEPEEDAERRNSEMAGIS 514

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 61.5 bits (149), Expect = 1e-10
 Identities = 46/101 (45%), Positives = 57/101 (56%)

Query: 171 SGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 230
           + ST   +  M   + EEEE  EEEEEEEEEEEEEE+E EEEE E+EEEEEE E +   E
Sbjct: 424 ASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSE 483

Query: 231 EEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           EE E   E + + EE EE+ E    E        E ++   
Sbjct: 484 EEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSEGQQPRG 524

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 61.0 bits (148), Expect = 1e-10
 Identities = 30/79 (37%), Positives = 42/79 (53%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K+  E ++E E+ +  E   + EEEE  + E EE  E E+ E  EE+    E     E+E
Sbjct: 371 KDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDE 430

Query: 245 EEEEEEEEEEGEEEEEEEE 263
            E+E+E EE   EEEEE  
Sbjct: 431 FEDEDELEEAQPEEEEEAR 449

Length = 449

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 61.0 bits (148), Expect = 1e-10
 Identities = 28/74 (37%), Positives = 39/74 (52%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
           Y +E E+ +  E   + EEEE  + E EE  E E+ E  EE+    E     E+E E+E+
Sbjct: 376 YDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDED 435

Query: 244 EEEEEEEEEEEGEE 257
           E EE + EEEE   
Sbjct: 436 ELEEAQPEEEEEAR 449

Length = 449

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 60.8 bits (147), Expect = 2e-10
 Identities = 42/112 (37%), Positives = 59/112 (52%), Gaps = 27/112 (24%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           +E+E+E E +  E+ E + +E  E + E E E E  E++E E + E + ++ E ++E  E
Sbjct: 775 KEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGE 834

Query: 247 EE---------------------------EEEEEEGEEEEEEEEEEEEEEEE 271
           +E                           EEEEEE EEEEEEEEEEEEEEEE
Sbjct: 835 QELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEE 886

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 35/91 (38%), Positives = 64/91 (70%)

Query: 175 DVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 234
           ++   +  F +  EEE E     ++  ++ ++  E+ E++ EEE++E++++    +++EE
Sbjct: 383 ELAARLAAFLELTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEE 442

Query: 235 EEEEEEEEEEEEEEEEEEEEGEEEEEEEEEE 265
           EEEEE+E++EEE+EEEEEE  EE+EEEEE++
Sbjct: 443 EEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473

Length = 482

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 60.4 bits (146), Expect = 3e-10
 Identities = 38/98 (38%), Positives = 52/98 (53%)

Query: 134 EDTKDKVRLLVKSGQLEIVTGGWVMTDEANSCNVSDNSGSTDVLTHMMPFYKEEEEEEEE 193
           E  + KV    ++   E          +A+   V D +G  ++        K++E+  + 
Sbjct: 795 EGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDG 854

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 231
               +  + EEEEEEEEEEEEEEEEEEEEEEEEEE EE
Sbjct: 855 GGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 59.9 bits (146), Expect = 3e-10
 Identities = 35/83 (42%), Positives = 63/83 (75%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
            EEE E     ++  ++ ++  E+ E++ EEE++E++++    +++EEEEEEE+E++EEE
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454

Query: 250 EEEEEGEEEEEEEEEEEEEEEEA 272
           +EEEE E EEE+EEEEE+++++A
Sbjct: 455 KEEEEEEAEEEKEEEEEKKKKQA 477

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 59.5 bits (145), Expect = 3e-10
 Identities = 34/79 (43%), Positives = 59/79 (74%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
            EEE E     ++  ++ ++  E+ E++ EEE++E++++    +++EEEEEEE+E++EEE
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454

Query: 249 EEEEEEGEEEEEEEEEEEE 267
           +EEEEE  EEE+EEEEE++
Sbjct: 455 KEEEEEEAEEEKEEEEEKK 473

Length = 482

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 59.6 bits (144), Expect = 5e-10
 Identities = 39/86 (45%), Positives = 48/86 (55%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EE   E E+E E E + E E E E   E + E+E E E E +E + + E E EE E E E
Sbjct: 661 EESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGE 720

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
            E E  E+EGE E  EE EE E+E E
Sbjct: 721 TEAEGTEDEGEIETGEEGEEVEDEGE 746

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 59.2 bits (144), Expect = 5e-10
 Identities = 31/72 (43%), Positives = 57/72 (79%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
             ++  ++ ++  E+ E++ EEE++E++++    +++EEEEEEE+E++EEE+EEEEEE E
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463

Query: 245 EEEEEEEEEEGE 256
           EE+EEEEE++ +
Sbjct: 464 EEKEEEEEKKKK 475

Length = 482

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 59.2 bits (143), Expect = 6e-10
 Identities = 46/113 (40%), Positives = 60/113 (53%)

Query: 161 EANSCNVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 220
            + S + S  S ++     M     EEEE  EEEEEEEEEEEEEE+E EEEE E+EEEEE
Sbjct: 415 SSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEE 474

Query: 221 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E E +   EEE E   E + + EE EE+ E             E ++    ++
Sbjct: 475 EVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSEGQQPRGSSV 527

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 59.0 bits (143), Expect = 6e-10
 Identities = 28/76 (36%), Positives = 40/76 (52%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
            E ++E E+ +  E   + EEEE  + E EE  E E+ E  EE+    E     E+E E+
Sbjct: 374 AEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFED 433

Query: 251 EEEEGEEEEEEEEEEE 266
           E+E  E + EEEEE  
Sbjct: 434 EDELEEAQPEEEEEAR 449

Length = 449

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 59.2 bits (144), Expect = 6e-10
 Identities = 35/79 (44%), Positives = 60/79 (75%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
            EEE E     ++  ++ ++  E+ E++ EEE++E++++    +++EEEEEEE+E++EEE
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454

Query: 248 EEEEEEEGEEEEEEEEEEE 266
           +EEEEEE EEE+EEEEE++
Sbjct: 455 KEEEEEEAEEEKEEEEEKK 473

Length = 482

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 59.2 bits (143), Expect = 7e-10
 Identities = 38/86 (44%), Positives = 47/86 (54%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
             E E+E E E + E E E E   E + E+E E E E +E + + E E EE E E E E 
Sbjct: 664 GGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEA 723

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E  E+E E E  EE EE E+E E EA
Sbjct: 724 EGTEDEGEIETGEEGEEVEDEGEGEA 749

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 58.3 bits (141), Expect = 9e-10
 Identities = 29/76 (38%), Positives = 40/76 (52%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253
            E ++E E+ +  E   + EEEE  + E EE  E E+ E  EE+    E     E+E E+
Sbjct: 374 AEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFED 433

Query: 254 EGEEEEEEEEEEEEEE 269
           E E EE + EEEEE  
Sbjct: 434 EDELEEAQPEEEEEAR 449

Length = 449

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 58.9 bits (142), Expect = 1e-09
 Identities = 38/85 (44%), Positives = 47/85 (55%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           E E E + E E E E   E + E+E E E E +E + + E E EE E E E E E  E+E
Sbjct: 670 EGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDE 729

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEE 271
            E E  EEGEE E+E E E E + E
Sbjct: 730 GEIETGEEGEEVEDEGEGEAEGKHE 754

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 28/76 (36%), Positives = 40/76 (52%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
            E ++E E+ +  E   + EEEE  + E EE  E E+ E  EE+    E     E+E E+
Sbjct: 374 AEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFED 433

Query: 250 EEEEEGEEEEEEEEEE 265
           E+E E  + EEEEE  
Sbjct: 434 EDELEEAQPEEEEEAR 449

Length = 449

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 30/84 (35%), Positives = 46/84 (54%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
           +K + ++  E ++E E+ +  E   + EEEE  + E EE  E E+ E  EE+    E   
Sbjct: 366 WKIDIKDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYP 425

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEE 267
             E+E E+E+E EE + EEEEE  
Sbjct: 426 LPEDEFEDEDELEEAQPEEEEEAR 449

Length = 449

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 29/76 (38%), Positives = 40/76 (52%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEG 255
            E ++E E+ +  E   + EEEE  + E EE  E E+ E  EE+    E     E+E E 
Sbjct: 374 AEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFED 433

Query: 256 EEEEEEEEEEEEEEEE 271
           E+E EE + EEEEE  
Sbjct: 434 EDELEEAQPEEEEEAR 449

Length = 449

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 57.9 bits (140), Expect = 1e-09
 Identities = 30/75 (40%), Positives = 42/75 (56%)

Query: 198 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEE 257
            E ++E E+ +  E   + EEEE  + E EE  E E+ E  EE+    E     E+E E+
Sbjct: 374 AEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFED 433

Query: 258 EEEEEEEEEEEEEEA 272
           E+E EE + EEEEEA
Sbjct: 434 EDELEEAQPEEEEEA 448

Length = 449

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 57.9 bits (140), Expect = 1e-09
 Identities = 28/76 (36%), Positives = 40/76 (52%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254
            E ++E E+ +  E   + EEEE  + E EE  E E+ E  EE+    E     E+E E+
Sbjct: 374 AEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFED 433

Query: 255 GEEEEEEEEEEEEEEE 270
            +E EE + EEEEE  
Sbjct: 434 EDELEEAQPEEEEEAR 449

Length = 449

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 25/91 (27%), Positives = 46/91 (50%)

Query: 176 VLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 235
            +    P  KE +  ++     +  + EE +E+E+EEEE+  +E EEEE E+ EEE  + 
Sbjct: 341 NVKLRNPSTKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQS 400

Query: 236 EEEEEEEEEEEEEEEEEEEGEEEEEEEEEEE 266
            E+   E   +   + E + ++E   + + E
Sbjct: 401 REDGSSESSSDVGSDSESKADKESASDSDSE 431

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 58.1 bits (140), Expect = 2e-09
 Identities = 39/90 (43%), Positives = 47/90 (52%)

Query: 182 PFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
           P   E E  EE   E E+E E E + E E E E   E + E+E E E E +E + + E E
Sbjct: 652 PTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETE 711

Query: 242 EEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            EE E E E E EG E+E E E  EE EE 
Sbjct: 712 AEEVEHEGETEAEGTEDEGEIETGEEGEEV 741

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 57.7 bits (139), Expect = 2e-09
 Identities = 38/86 (44%), Positives = 47/86 (54%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           E E+E E E + E E E E   E + E+E E E E +E + + E E EE E E E E E 
Sbjct: 666 EAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEG 725

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEEA 272
            E+E E E  EE EE E+E E E E 
Sbjct: 726 TEDEGEIETGEEGEEVEDEGEGEAEG 751

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 57.7 bits (139), Expect = 2e-09
 Identities = 37/94 (39%), Positives = 48/94 (51%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            E+E E E + E E E E   E + E+E E E E +E + + E E EE E E E E E  
Sbjct: 667 AEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGT 726

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEALWGYAD 278
           E+E E E  E  EE E+E E E E +  +    D
Sbjct: 727 EDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGD 760

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 39/88 (44%), Positives = 49/88 (55%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +  EEEEEEEEEEEEEE+E EEEE E+EEEEEE E +   EEE E   E + + EE EE+
Sbjct: 443 ESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEED 502

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            E    E        E ++      +  
Sbjct: 503 AERRNSEMAGISRMSEGQQPRGSSVQPE 530

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 28/76 (36%), Positives = 40/76 (52%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
            E ++E E+ +  E   + EEEE  + E EE  E E+ E  EE+    E     E+E E+
Sbjct: 374 AEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFED 433

Query: 253 EEGEEEEEEEEEEEEE 268
           E+  EE + EEEEE  
Sbjct: 434 EDELEEAQPEEEEEAR 449

Length = 449

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 21/83 (25%), Positives = 49/83 (59%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254
            + EEE ++E   ++   + EE+++++EE +EE+EE  + E++E++++++++++    E 
Sbjct: 104 GDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRER 163

Query: 255 GEEEEEEEEEEEEEEEEALWGYA 277
             E      E EE+  E  + Y 
Sbjct: 164 SLERRRRRREWEEKRAELEFYYY 186

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 57.7 bits (139), Expect = 2e-09
 Identities = 27/92 (29%), Positives = 55/92 (59%)

Query: 188  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
            E  +E +EE + E++E  ++E+  EE    +E+ ++++  +  E++E+  E+  EE  +E
Sbjct: 4014 EAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQE 4073

Query: 248  EEEEEEEGEEEEEEEEEEEEEEEEALWGYADM 279
             EE  E+G + +EE E+ E  E++A+  +  M
Sbjct: 4074 NEESTEDGVKSDEELEQGEVPEDQAIDNHPKM 4105

Length = 4600

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 57.3 bits (138), Expect = 3e-09
 Identities = 39/91 (42%), Positives = 52/91 (57%)

Query: 181 MPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240
           +P  ++ E+E E E E +E + + E E EE E E E E E  E+E E E  EE EE E+E
Sbjct: 685 IPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDE 744

Query: 241 EEEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            E E E + E E EG+ +E E E E E E +
Sbjct: 745 GEGEAEGKHEVETEGDRKETEHEGETEAEGK 775

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 57.3 bits (138), Expect = 3e-09
 Identities = 38/86 (44%), Positives = 48/86 (55%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E E E E   E + E+E E E E +E + + E E EE E E E E E  E+E E E  EE
Sbjct: 678 ENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEE 737

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
            EE E+E EGE E + E E E + +E
Sbjct: 738 GEEVEDEGEGEAEGKHEVETEGDRKE 763

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 57.3 bits (138), Expect = 3e-09
 Identities = 39/85 (45%), Positives = 48/85 (56%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E E+E E E + E E E E   E + E+E E E E +E + + E E EE E E E E E 
Sbjct: 666 EAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEG 725

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEE 270
            E+E E E GEE EE E+E E E E
Sbjct: 726 TEDEGEIETGEEGEEVEDEGEGEAE 750

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 31/70 (44%), Positives = 50/70 (71%)

Query: 170 NSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 229
            S         +    E++ EEE++E++++    +++EEEEEEE+E++EEE+EEEEEE E
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463

Query: 230 EEEEEEEEEE 239
           EE+EEEEE++
Sbjct: 464 EEKEEEEEKK 473

Length = 482

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 56.3 bits (136), Expect = 5e-09
 Identities = 23/83 (27%), Positives = 44/83 (53%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
            +E +  ++     +  + EE +E+E+EEEE+  +E EEEE E+ EEE  +  E+   E 
Sbjct: 349 TKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSES 408

Query: 248 EEEEEEEGEEEEEEEEEEEEEEE 270
             +   + E + ++E   + + E
Sbjct: 409 SSDVGSDSESKADKESASDSDSE 431

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 55.9 bits (135), Expect = 5e-09
 Identities = 23/82 (28%), Positives = 45/82 (54%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
            +E +  ++     +  + EE +E+E+EEEE+  +E EEEE E+ EEE  +  E+   E 
Sbjct: 349 TKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSES 408

Query: 251 EEEEGEEEEEEEEEEEEEEEEA 272
             + G + E + ++E   + ++
Sbjct: 409 SSDVGSDSESKADKESASDSDS 430

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 56.5 bits (136), Expect = 6e-09
 Identities = 39/86 (45%), Positives = 51/86 (59%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           E +E + + E E EE E E E E E  E+E E E  EE EE E+E E E E + E E E 
Sbjct: 700 EAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEG 759

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEEA 272
           + +E E EGE E E +E+E+E E +A
Sbjct: 760 DRKETEHEGETEAEGKEDEDEGEIQA 785

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 40/92 (43%), Positives = 50/92 (54%), Gaps = 17/92 (18%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----------------E 225
            Y+ EEEEEEEEEEE  E +E EE  + E  E  E  +  +                   
Sbjct: 284 LYQLEEEEEEEEEEEPAERDELEENPDFEGLEVRELADSLDNWVHHVQHILPQGRCTWVN 343

Query: 226 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEE 257
            E+++EEEE+E+EEEEEEEEE EE E EEG  
Sbjct: 344 PEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375

This family includes the radial spoke head proteins RSP4 and RSP6 from Chlamydomonas reinhardtii, and several eukaryotic homologues, including mammalian RSHL1, the protein product of a familial ciliary dyskinesia candidate gene. Length = 481

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 55.5 bits (134), Expect = 8e-09
 Identities = 23/82 (28%), Positives = 43/82 (52%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           +E +  ++     +  + EE +E+E+EEEE+  +E EEEE E+ EEE  +  E+   E  
Sbjct: 350 KESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESS 409

Query: 246 EEEEEEEEEGEEEEEEEEEEEE 267
            +   + E   ++E   + + E
Sbjct: 410 SDVGSDSESKADKESASDSDSE 431

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 55.8 bits (134), Expect = 9e-09
 Identities = 38/93 (40%), Positives = 49/93 (52%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
             E + E+E E E E +E + + E E EE E E E E E  E+E E E  EE EE E+E 
Sbjct: 686 PAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEG 745

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEALWGYAD 278
           E E E + E E E + +E E E E EA     +
Sbjct: 746 EGEAEGKHEVETEGDRKETEHEGETEAEGKEDE 778

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 55.5 bits (134), Expect = 9e-09
 Identities = 22/82 (26%), Positives = 43/82 (52%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
            +E +  ++     +  + EE +E+E+EEEE+  +E EEEE E+ EEE  +  E+   E 
Sbjct: 349 TKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSES 408

Query: 250 EEEEEGEEEEEEEEEEEEEEEE 271
             +   + E + ++E   + + 
Sbjct: 409 SSDVGSDSESKADKESASDSDS 430

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 55.1 bits (133), Expect = 9e-09
 Identities = 23/83 (27%), Positives = 44/83 (53%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            +E +  ++     +  + EE +E+E+EEEE+  +E EEEE E+ EEE  +  E+   E 
Sbjct: 349 TKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSES 408

Query: 246 EEEEEEEEEGEEEEEEEEEEEEE 268
             +   + E + ++E   + + E
Sbjct: 409 SSDVGSDSESKADKESASDSDSE 431

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 38/85 (44%), Positives = 49/85 (57%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           E E E +E + + E E EE E E E E E  E+E E E  EE EE E+E E E E + E 
Sbjct: 696 EGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEV 755

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEE 271
           E E + +E E E E E E +E+E+E
Sbjct: 756 ETEGDRKETEHEGETEAEGKEDEDE 780

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 38/87 (43%), Positives = 48/87 (55%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E E   E + E+E E E E +E + + E E EE E E E E E  E+E E E  EE EE 
Sbjct: 682 EGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEV 741

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E+E E E EG+ E E E + +E E E 
Sbjct: 742 EDEGEGEAEGKHEVETEGDRKETEHEG 768

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 55.0 bits (132), Expect = 1e-08
 Identities = 36/87 (41%), Positives = 44/87 (50%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E E   E E E  EE   E E+E E E + E E E E   E + E+E E E E +E + +
Sbjct: 648 EGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHK 707

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            E E EE E E E E E  E+E E E 
Sbjct: 708 GETEAEEVEHEGETEAEGTEDEGEIET 734

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 23/83 (27%), Positives = 43/83 (51%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
            +E +  ++     +  + EE +E+E+EEEE+  +E EEEE E+ EEE  +  E+   E 
Sbjct: 349 TKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSES 408

Query: 249 EEEEEEGEEEEEEEEEEEEEEEE 271
             +     E + ++E   + + E
Sbjct: 409 SSDVGSDSESKADKESASDSDSE 431

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 22/83 (26%), Positives = 43/83 (51%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
            +E +  ++     +  + EE +E+E+EEEE+  +E EEEE E+ EEE  +  E+   E 
Sbjct: 349 TKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSES 408

Query: 247 EEEEEEEEGEEEEEEEEEEEEEE 269
             +   +   + ++E   + + E
Sbjct: 409 SSDVGSDSESKADKESASDSDSE 431

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 23/84 (27%), Positives = 42/84 (50%)

Query: 174 TDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 233
           +   + M    +   +  + EE +E+E+EEEE+  +E EEEE E+ EEE  +  E+   E
Sbjct: 348 STKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSE 407

Query: 234 EEEEEEEEEEEEEEEEEEEEEGEE 257
              +   + E + ++E   +   E
Sbjct: 408 SSSDVGSDSESKADKESASDSDSE 431

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 21/87 (24%), Positives = 50/87 (57%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
            + EEE ++E   ++   + EE+++++EE +EE+EE  + E++E++++++++++    E 
Sbjct: 104 GDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRER 163

Query: 248 EEEEEEEGEEEEEEEEEEEEEEEEALW 274
             E      E EE+  E E    +  +
Sbjct: 164 SLERRRRRREWEEKRAELEFYYYQGTY 190

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 36/87 (41%), Positives = 44/87 (50%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
             EE E   E E E  EE   E E+E E E + E E E E   E + E+E E E E +E 
Sbjct: 645 TGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEA 704

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           + + E E EE E E E E E  E+E E
Sbjct: 705 DHKGETEAEEVEHEGETEAEGTEDEGE 731

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 36/86 (41%), Positives = 43/86 (50%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E   E   EE E   E E E  EE   E E+E E E + E E E E   E + E+E E E
Sbjct: 639 EHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGE 698

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
            E +E + +GE E EE E E E E E
Sbjct: 699 IEAKEADHKGETEAEEVEHEGETEAE 724

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 38/87 (43%), Positives = 50/87 (57%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KE + + E E EE E E E E E  E+E E E  EE EE E+E E E E + E E E + 
Sbjct: 702 KEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDR 761

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           +E E E E E E +E+E+E E +  E+
Sbjct: 762 KETEHEGETEAEGKEDEDEGEIQAGED 788

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 40/88 (45%), Positives = 50/88 (56%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EEEEEEEEEE+E EEEE E+EEEEEE E +   EEE E   E + + EE EE+ E    E
Sbjct: 450 EEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSE 509

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
                   EG++      + E  +EE L
Sbjct: 510 MAGISRMSEGQQPRGSSVQPESPQEEPL 537

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 21/84 (25%), Positives = 49/84 (58%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
            + EEE ++E   ++   + EE+++++EE +EE+EE  + E++E++++++++++    E 
Sbjct: 104 GDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRER 163

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEE 270
             E      E EE+  E E    +
Sbjct: 164 SLERRRRRREWEEKRAELEFYYYQ 187

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 54.2 bits (130), Expect = 3e-08
 Identities = 38/95 (40%), Positives = 48/95 (50%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E E E   E + E+E E E E +E + + E E EE E E E E E  E+E E E  EE E
Sbjct: 680 ESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGE 739

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEALWGYADMG 280
           E E+E E E E + E E E + +E E        G
Sbjct: 740 EVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEG 774

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 54.2 bits (130), Expect = 3e-08
 Identities = 38/85 (44%), Positives = 49/85 (57%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           E E +E + + E E EE E E E E E  E+E E E  EE EE E+E E E E + E E 
Sbjct: 698 EIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVET 757

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEE 271
           E + +E E E E E E +E+E+E E
Sbjct: 758 EGDRKETEHEGETEAEGKEDEDEGE 782

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 54.2 bits (130), Expect = 3e-08
 Identities = 36/86 (41%), Positives = 49/86 (56%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E  E+E E E  EE EE E+E E E E + E E E + +E E E E E E +E+E+E E 
Sbjct: 724 EGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEI 783

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
           +  E+ E +G+E  E + E E E E 
Sbjct: 784 QAGEDGEMKGDEGAEGKVEHEGETEA 809

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 54.2 bits (130), Expect = 3e-08
 Identities = 37/93 (39%), Positives = 50/93 (53%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            EE E E E E E  E+E E E  EE EE E+E E E E + E E E + +E E E E E
Sbjct: 712 AEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETE 771

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEALWGYAD 278
            E +E+E+EGE +  E+ E + +E        +
Sbjct: 772 AEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHE 804

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 36/110 (32%), Positives = 62/110 (56%)

Query: 162 ANSCNVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 221
           A   + S      +VL  +   +K   E         E  EEE E     ++  ++ ++ 
Sbjct: 356 AEKLHTSKRKVRREVLPFLSIIFKHNPELAARLAAFLELTEEEIEFLTGSKKATKKIKKI 415

Query: 222 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            E+ E++ EEE++E++++    +++EEEEEEE+ ++EEE+EEEEEE EEE
Sbjct: 416 VEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEE 465

Length = 482

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 21/83 (25%), Positives = 49/83 (59%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           + EEE ++E   ++   + EE+++++EE +EE+EE  + E++E++++++++++    E  
Sbjct: 105 DIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERS 164

Query: 246 EEEEEEEEEGEEEEEEEEEEEEE 268
            E      E EE+  E E    +
Sbjct: 165 LERRRRRREWEEKRAELEFYYYQ 187

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 54.2 bits (130), Expect = 3e-08
 Identities = 23/88 (26%), Positives = 51/88 (57%)

Query: 186  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            E+E +  ++ + E+ + E  +E +EE + E++E  ++E+  EE    +E+ ++++  +  
Sbjct: 3997 EKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLA 4056

Query: 246  EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            E++E+  E+G EE  +E EE  E+    
Sbjct: 4057 EDDEKMNEDGFEENVQENEESTEDGVKS 4084

Length = 4600

>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 30/110 (27%), Positives = 53/110 (48%)

Query: 160 DEANSCNVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 219
           D        D+  +   +   M    +  EE  ++  EE+ +EE+ ++++ +  E+ E  
Sbjct: 191 DLDGLAAEIDDQQAFARVVRDMLGSMDMAEETGDDGIEEDADEEDGDDDQPDNNEDSEAG 250

Query: 220 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEE 269
            EE E  +E EE+E E  + E EE E +  E  E+ E +E +E+ E   E
Sbjct: 251 REESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTETPGE 300

Length = 620

>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 26/78 (33%), Positives = 45/78 (57%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
           EE  ++  EE+ +EE+ ++++ +  E+ E   EE E  +E EE+E E  + E EE E + 
Sbjct: 220 EETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDA 279

Query: 253 EEGEEEEEEEEEEEEEEE 270
            E  E+ E +E +E+ E 
Sbjct: 280 AEASEDSESDESDEDTET 297

Length = 620

>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 2/105 (1%)

Query: 157 VMTDEANSCNVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 216
            + D+     V  +   +  +        +  EE+ +EE+ ++++ +  E+ E   EE E
Sbjct: 198 EIDDQQAFARVVRDMLGSMDMAEETG--DDGIEEDADEEDGDDDQPDNNEDSEAGREESE 255

Query: 217 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEE 261
             +E EE+E E  + E EE E +  E  E+ E +E +E  E   E
Sbjct: 256 GSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTETPGE 300

Length = 620

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 53.8 bits (129), Expect = 4e-08
 Identities = 38/86 (44%), Positives = 50/86 (58%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           + + E E EE E E E E E  E+E E E  EE EE E+E E E E + E E E + +E 
Sbjct: 705 DHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKET 764

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
           E E E E EG+E+E+E E +  E+ E
Sbjct: 765 EHEGETEAEGKEDEDEGEIQAGEDGE 790

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 53.8 bits (129), Expect = 4e-08
 Identities = 36/85 (42%), Positives = 48/85 (56%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E +E + + E E EE E E E E E  E+E E E  EE EE E+E E E E + E E E 
Sbjct: 700 EAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEG 759

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEE 270
           + +E E E   E E +E+E+E E +
Sbjct: 760 DRKETEHEGETEAEGKEDEDEGEIQ 784

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
           EE  ++  EE+ +EE+ ++++ +  E+ E   EE E  +E EE+E E  + E EE E + 
Sbjct: 220 EETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDA 279

Query: 250 EEEEEGEEEEEEEEEEEEEEEEAL 273
            E  E  E +E +E+ E   E+A 
Sbjct: 280 AEASEDSESDESDEDTETPGEDAR 303

Length = 620

>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit

 Score = 53.8 bits (129), Expect = 4e-08
 Identities = 25/82 (30%), Positives = 46/82 (56%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           E  EE  ++ E E+EE+ ++++  E E+EE+ E E E +E    +E E  + E E  EEE
Sbjct: 198 ELAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEE 257

Query: 248 EEEEEEEGEEEEEEEEEEEEEE 269
             + +++   +E +++ E   E
Sbjct: 258 MVQSDQDDLPDESDDDSETPGE 279

This model describes Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit that functions in cobalamin biosynthesis. Cobalamin (vitamin B12) can be synthesized via several pathways, including an aerobic pathway (found in Pseudomonas denitrificans) and an anaerobic pathway (found in P. shermanii and Salmonella typhimurium). These pathways differ in the point of cobalt insertion during corrin ring formation. There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction. Confusion regarding the functions of enzymes found in the aerobic vs. anaerobic pathways has arisen because nonhomologous genes in these different pathways were given the same gene symbols. Thus, cobT in the aerobic pathway (P. denitrificans) is not a homolog of cobT in the anaerobic pathway (S. typhimurium). It should be noted that E. coli synthesizes cobalamin only when it is supplied with the precursor cobinamide, which is a complex intermediate. Additionally, all E. coli cobalamin synthesis genes (cobU, cobS and cobT) were named after their Salmonella typhimurium homologs which function in the anaerobic cobalamin synthesis pathway. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 600

>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit

 Score = 53.4 bits (128), Expect = 4e-08
 Identities = 24/79 (30%), Positives = 46/79 (58%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EE  ++ E E+EE+ ++++  E E+EE+ E E E +E    +E E  + E E  EEE  +
Sbjct: 201 EEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQ 260

Query: 246 EEEEEEEEEGEEEEEEEEE 264
            ++++  +E +++ E   E
Sbjct: 261 SDQDDLPDESDDDSETPGE 279

This model describes Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit that functions in cobalamin biosynthesis. Cobalamin (vitamin B12) can be synthesized via several pathways, including an aerobic pathway (found in Pseudomonas denitrificans) and an anaerobic pathway (found in P. shermanii and Salmonella typhimurium). These pathways differ in the point of cobalt insertion during corrin ring formation. There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction. Confusion regarding the functions of enzymes found in the aerobic vs. anaerobic pathways has arisen because nonhomologous genes in these different pathways were given the same gene symbols. Thus, cobT in the aerobic pathway (P. denitrificans) is not a homolog of cobT in the anaerobic pathway (S. typhimurium). It should be noted that E. coli synthesizes cobalamin only when it is supplied with the precursor cobinamide, which is a complex intermediate. Additionally, all E. coli cobalamin synthesis genes (cobU, cobS and cobT) were named after their Salmonella typhimurium homologs which function in the anaerobic cobalamin synthesis pathway. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 600

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 23/70 (32%), Positives = 41/70 (58%)

Query: 205 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEE 264
           +E  E EE EEE + E E   E +  ++E+E   EE+     EE+E+ ++ E+ ++ E  
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEIL 286

Query: 265 EEEEEEEALW 274
           +E+++EE  W
Sbjct: 287 KEKKDEELFW 296

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 53.4 bits (128), Expect = 5e-08
 Identities = 37/87 (42%), Positives = 47/87 (54%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EEEEEEEEEEE+E EEEE E+EEEEEE E +   EEE E   E + + EE EE+ E    
Sbjct: 449 EEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNS 508

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E          ++      + E  +E 
Sbjct: 509 EMAGISRMSEGQQPRGSSVQPESPQEE 535

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 21/87 (24%), Positives = 49/87 (56%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
           F   + EEE ++E   ++   + EE+++++EE +EE+EE  + E++E++++++++++   
Sbjct: 101 FDDGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIAT 160

Query: 243 EEEEEEEEEEEEGEEEEEEEEEEEEEE 269
            E   E        EE+  E E    +
Sbjct: 161 RERSLERRRRRREWEEKRAELEFYYYQ 187

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 53.8 bits (129), Expect = 5e-08
 Identities = 24/84 (28%), Positives = 50/84 (59%)

Query: 187  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
            E  +E +EE + E++E  ++E+  EE    +E+ ++++  +  E++E+  E+  EE  +E
Sbjct: 4014 EAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQE 4073

Query: 247  EEEEEEEEGEEEEEEEEEEEEEEE 270
             EE  E+  + +EE E+ E  E++
Sbjct: 4074 NEESTEDGVKSDEELEQGEVPEDQ 4097

Length = 4600

>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi

 Score = 53.7 bits (129), Expect = 5e-08
 Identities = 25/91 (27%), Positives = 50/91 (54%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
           F  EEE+E++ EE +++E+E E  E+ E E E + E+ EE+E+E++ E  E     ++  
Sbjct: 645 FEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAV 704

Query: 243 EEEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
                +     +  +  + E+EE  ++E+ +
Sbjct: 705 RRALPKVLNLPDALDGGDSEDEEGMDDEQMM 735

This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localised exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units. Length = 784

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 10/87 (11%), Positives = 62/87 (71%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
              +++++    ++ +   + +++++++++++ ++++ ++++++E+++E++++++ ++E+
Sbjct: 110 NALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDED 169

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           EE++E +E E   ++++   +E++ E 
Sbjct: 170 EEKKEAKELEKLSDDDDFVWDEDDSEA 196

Length = 509

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 53.1 bits (127), Expect = 5e-08
 Identities = 15/82 (18%), Positives = 26/82 (31%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
           E     EE  E + E E+  +   +     + + E      EE      E  +E E E  
Sbjct: 358 ESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVP 417

Query: 251 EEEEGEEEEEEEEEEEEEEEEA 272
           E+     +  + +E        
Sbjct: 418 EKAAPIPDPAKPDELAVAGPGD 439

Length = 460

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 53.1 bits (127), Expect = 5e-08
 Identities = 19/126 (15%), Positives = 37/126 (29%)

Query: 146 SGQLEIVTGGWVMTDEANSCNVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEE 205
            G  E      V            +  + + +  +     E     EE  E + E E+  
Sbjct: 318 VGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPG 377

Query: 206 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEE 265
           +   +     + + E      EE      E  +E E E  E+     +  + +E      
Sbjct: 378 DLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGP 437

Query: 266 EEEEEE 271
            ++  E
Sbjct: 438 GDDPAE 443

Length = 460

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 53.5 bits (128), Expect = 6e-08
 Identities = 25/104 (24%), Positives = 54/104 (51%)

Query: 166  NVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 225
             + +  G     + +     E  +E +EE + E++E  ++E+  EE    +E+ ++++  
Sbjct: 3994 KLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFS 4053

Query: 226  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEE 269
            +  E++E+  E+  EE  +E EE  E+    +EE E+ E  E++
Sbjct: 4054 DLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQ 4097

Length = 4600

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 53.1 bits (127), Expect = 7e-08
 Identities = 38/85 (44%), Positives = 48/85 (56%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
           +K E E EE E E E E E  E+E E E  EE EE E+E E E E + E E E + +E E
Sbjct: 706 HKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETE 765

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEE 268
            E E E E +E E+E E +  E+ E
Sbjct: 766 HEGETEAEGKEDEDEGEIQAGEDGE 790

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 53.1 bits (127), Expect = 7e-08
 Identities = 36/86 (41%), Positives = 50/86 (58%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E+E E E  EE EE E+E E E E + E E E + +E E E E E E +E+E+E E +  
Sbjct: 727 EDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAG 786

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
           E+ E + +EG E + E E E E  E+
Sbjct: 787 EDGEMKGDEGAEGKVEHEGETEAGEK 812

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit

 Score = 52.6 bits (126), Expect = 7e-08
 Identities = 25/83 (30%), Positives = 46/83 (55%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
           E  EE  ++ E E+EE+ ++++  E E+EE+ E E E +E    +E E  + E E  EEE
Sbjct: 198 ELAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEE 257

Query: 250 EEEEEGEEEEEEEEEEEEEEEEA 272
             + + ++  +E +++ E   E 
Sbjct: 258 MVQSDQDDLPDESDDDSETPGEG 280

This model describes Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit that functions in cobalamin biosynthesis. Cobalamin (vitamin B12) can be synthesized via several pathways, including an aerobic pathway (found in Pseudomonas denitrificans) and an anaerobic pathway (found in P. shermanii and Salmonella typhimurium). These pathways differ in the point of cobalt insertion during corrin ring formation. There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction. Confusion regarding the functions of enzymes found in the aerobic vs. anaerobic pathways has arisen because nonhomologous genes in these different pathways were given the same gene symbols. Thus, cobT in the aerobic pathway (P. denitrificans) is not a homolog of cobT in the anaerobic pathway (S. typhimurium). It should be noted that E. coli synthesizes cobalamin only when it is supplied with the precursor cobinamide, which is a complex intermediate. Additionally, all E. coli cobalamin synthesis genes (cobU, cobS and cobT) were named after their Salmonella typhimurium homologs which function in the anaerobic cobalamin synthesis pathway. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 600

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 12/89 (13%), Positives = 65/89 (73%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K   +++++    ++ +   + +++++++++++ ++++ ++++++E+++E++++++ ++E
Sbjct: 109 KNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDE 168

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           +EE++E +E  +  ++++   +E++ EAL
Sbjct: 169 DEEKKEAKELEKLSDDDDFVWDEDDSEAL 197

Length = 509

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 10/88 (11%), Positives = 64/88 (72%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K+   +++++    ++ +   + +++++++++++ ++++ ++++++E+++E++++++ ++
Sbjct: 108 KKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDD 167

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E+EE++E +E E+  ++++   +E++  
Sbjct: 168 EDEEKKEAKELEKLSDDDDFVWDEDDSE 195

Length = 509

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 52.7 bits (126), Expect = 9e-08
 Identities = 38/95 (40%), Positives = 50/95 (52%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            E EE E E E E E  E+E E E  EE EE E+E E E E + E E E + +E E E E
Sbjct: 710 TEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGE 769

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEALWGYADMG 280
            E E +E+E E E +  E+ E + +E   G  +  
Sbjct: 770 TEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHE 804

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 36/86 (41%), Positives = 49/86 (56%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E E E  E+E E E  EE EE E+E E E E + E E E + +E E E E E E +E+E+
Sbjct: 720 ETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDED 779

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
           E E +  E+GE + +E  E + E E 
Sbjct: 780 EGEIQAGEDGEMKGDEGAEGKVEHEG 805

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 36/92 (39%), Positives = 50/92 (54%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           E  EE EE E+E E E E + E E E + +E E E E E E +E+E+E E +  E+ E +
Sbjct: 733 ETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMK 792

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEEALWGYAD 278
            +E  E + E E E E  E++E E      AD
Sbjct: 793 GDEGAEGKVEHEGETEAGEKDEHEGQSETQAD 824

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 41/87 (47%), Positives = 50/87 (57%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
             EEEE  + +E E +       +  +      E      +E EEEE  EEEEEEEEEEE
Sbjct: 397 DTEEEERRKRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEE 456

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           EEE+E EEEEGE+EEEEEE E +   E
Sbjct: 457 EEEQESEEEEGEDEEEEEEVEADNGSE 483

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 22/88 (25%), Positives = 50/88 (56%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            + +EE + E++E  ++E+  EE    +E+ ++++  +  E++E+  E+  EE  +E EE 
Sbjct: 4018 ENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEES 4077

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
             E+  + +EE E+ E  E++  +   + 
Sbjct: 4078 TEDGVKSDEELEQGEVPEDQAIDNHPKM 4105

Length = 4600

>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 28/103 (27%), Positives = 50/103 (48%)

Query: 169 DNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 228
           D  G    +     F +   +     +  EE  ++  EE+ +EE+ ++++ +  E+ E  
Sbjct: 191 DLDGLAAEIDDQQAFARVVRDMLGSMDMAEETGDDGIEEDADEEDGDDDQPDNNEDSEAG 250

Query: 229 EEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            EE E  +E EE+E E  + E EE E +  E  E+ E +E +E
Sbjct: 251 REESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDE 293

Length = 620

>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 25/82 (30%), Positives = 47/82 (57%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E  EE  ++ E E+EE+ ++++  E E+EE+ E E E +E    +E E  + E E  EEE
Sbjct: 198 ELAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEE 257

Query: 246 EEEEEEEEEGEEEEEEEEEEEE 267
             + ++++  +E +++ E   E
Sbjct: 258 MVQSDQDDLPDESDDDSETPGE 279

This model describes Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit that functions in cobalamin biosynthesis. Cobalamin (vitamin B12) can be synthesized via several pathways, including an aerobic pathway (found in Pseudomonas denitrificans) and an anaerobic pathway (found in P. shermanii and Salmonella typhimurium). These pathways differ in the point of cobalt insertion during corrin ring formation. There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction. Confusion regarding the functions of enzymes found in the aerobic vs. anaerobic pathways has arisen because nonhomologous genes in these different pathways were given the same gene symbols. Thus, cobT in the aerobic pathway (P. denitrificans) is not a homolog of cobT in the anaerobic pathway (S. typhimurium). It should be noted that E. coli synthesizes cobalamin only when it is supplied with the precursor cobinamide, which is a complex intermediate. Additionally, all E. coli cobalamin synthesis genes (cobU, cobS and cobT) were named after their Salmonella typhimurium homologs which function in the anaerobic cobalamin synthesis pathway. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 600

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 11/88 (12%), Positives = 63/88 (71%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            ++++    ++ +   + +++++++++++ ++++ ++++++E+++E++++++ ++E+EE+
Sbjct: 113 DKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEK 172

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           +E +E E+   +++   +E++ E   +A
Sbjct: 173 KEAKELEKLSDDDDFVWDEDDSEALRQA 200

Length = 509

>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 29/88 (32%), Positives = 44/88 (50%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           +E  E   E  +E  +  E+E+  E EEE+ E +  +EE ++ + E +  EE  +E E +
Sbjct: 2   KELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAK 61

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
                E   GEEEEEE + E  E    L
Sbjct: 62  PAASGEGGGGEEEEEEAKAEAAEFRAYL 89

This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease [Mobile and extrachromosomal element functions, Prophage functions]. Length = 384

>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 28/88 (31%), Positives = 44/88 (50%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
            +E  E   E  +E  +  E+E+  E EEE+ E +  +EE ++ + E +  EE  +E E 
Sbjct: 1   LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEA 60

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEEALW 274
           +     E G  EEEEEE + E  E   +
Sbjct: 61  KPAASGEGGGGEEEEEEAKAEAAEFRAY 88

This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease [Mobile and extrachromosomal element functions, Prophage functions]. Length = 384

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 17/82 (20%), Positives = 47/82 (57%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
           EE+ +++E+++ EE ++++  E+E  ++ E+E    +E++++ EE  ++   ++++ EE 
Sbjct: 78  EEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEA 137

Query: 251 EEEEGEEEEEEEEEEEEEEEEA 272
             +     + + E E +    A
Sbjct: 138 AAKAAAAAKAKAEAEAKRAAAA 159

Length = 387

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 24/67 (35%), Positives = 48/67 (71%)

Query: 203 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEE 262
            EE+    +    ++++E+E+E++++EE++EEEEEEEEE +  ++E+EE+E GE+   E+
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEK 200

Query: 263 EEEEEEE 269
            E ++ +
Sbjct: 201 SEVDKTD 207

Length = 2849

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 35/86 (40%), Positives = 50/86 (58%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EE EE E+E E E E + E E E + +E E E E E E +E+E+E E +  E+ E + +E
Sbjct: 736 EEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDE 795

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
             E + E EGE E  E++E E + E 
Sbjct: 796 GAEGKVEHEGETEAGEKDEHEGQSET 821

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 40/114 (35%), Positives = 56/114 (49%), Gaps = 29/114 (25%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           E E E E E +E+E+E E +  E+ E + +E  E + E E E E  E++E E + E + +
Sbjct: 765 EHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQAD 824

Query: 247 EEEEEEEEGE-----------------------------EEEEEEEEEEEEEEE 271
           + E ++E GE                             EEEEEEEEEEEEEEE
Sbjct: 825 DTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEE 878

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 33/86 (38%), Positives = 48/86 (55%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            EE EE E+E E E E + E E E + +E E E E E E +E+E+E E +  E+ E + +
Sbjct: 735 GEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGD 794

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
           E  E + E   E E  E++E E + E
Sbjct: 795 EGAEGKVEHEGETEAGEKDEHEGQSE 820

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 32/95 (33%), Positives = 50/95 (52%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EE E+E E E E + E E E + +E E E E E E +E+E+E E +  E+ E + +E  E
Sbjct: 739 EEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAE 798

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEALWGYADMG 280
            + E E E    E++E E + E + +      + G
Sbjct: 799 GKVEHEGETEAGEKDEHEGQSETQADDTEVKDETG 833

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 34/84 (40%), Positives = 41/84 (48%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           E E   E   EE E   E E E  EE   E E+E E E + E E E E   E + E+E E
Sbjct: 637 EAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGE 696

Query: 248 EEEEEEEGEEEEEEEEEEEEEEEE 271
            E E +E + + E E EE E E E
Sbjct: 697 GEIEAKEADHKGETEAEEVEHEGE 720

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 35/84 (41%), Positives = 49/84 (58%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           E E  EE EE E+E E E E + E E E + +E E E E E E +E+E+E E +  E+ E
Sbjct: 731 EIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGE 790

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEE 270
            + +E  EG+ E E E E  E++E
Sbjct: 791 MKGDEGAEGKVEHEGETEAGEKDE 814

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 31/88 (35%), Positives = 56/88 (63%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
           Y EEE  +     E  E+ +EEE +++E E+  E +++++EEEE E EE+E+ ++E E  
Sbjct: 60  YGEEEVVDGIPGLELLEKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWI 119

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           + E ++E E    E+EEE++E  ++ +E
Sbjct: 120 DVESDKEIESSDSEDEEEKDEAAKKAKE 147

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 41/93 (44%), Positives = 53/93 (56%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EEEE  + +E E +       +  +      E      +E EEEE  EEEEEEEEEEEEE
Sbjct: 399 EEEERRKRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEE 458

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEALWGYAD 278
           E+E EEEE  +EEEEEE E +   EE + G ++
Sbjct: 459 EQESEEEEGEDEEEEEEVEADNGSEEEMEGSSE 491

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 40/89 (44%), Positives = 52/89 (58%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
           Y  ++++ EEEE  + +E E +       +  +      E      +E EEEE  EEEEE
Sbjct: 391 YAMKQDDTEEEERRKRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEE 450

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           EEEEEEEEE+E EEEE E+EEEEEE E  
Sbjct: 451 EEEEEEEEEQESEEEEGEDEEEEEEVEAD 479

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 26/103 (25%), Positives = 54/103 (52%)

Query: 169  DNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 228
            D S  +D+    M    E +EE + E++E  ++E+  EE    +E+ ++++  +  E++E
Sbjct: 4001 DVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDE 4060

Query: 229  EEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            +  E+  EE  +E EE  E+  + +E  E+ E  E++  +   
Sbjct: 4061 KMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHP 4103

Length = 4600

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 23/67 (34%), Positives = 40/67 (59%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KE  E EE EEE + E E   E +  ++E+E   EE+     EE+E+ ++ E+ ++ E  
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEIL 286

Query: 245 EEEEEEE 251
           +E+++EE
Sbjct: 287 KEKKDEE 293

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 23/69 (33%), Positives = 41/69 (59%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K +E  E EE EEE + E E   E +  ++E+E   EE+     EE+E+ ++ E+ ++ E
Sbjct: 225 KLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLE 284

Query: 245 EEEEEEEEE 253
             +E+++EE
Sbjct: 285 ILKEKKDEE 293

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 24/72 (33%), Positives = 43/72 (59%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
           F K+ +E  E EE EEE + E E   E +  ++E+E   EE+     EE+E+ ++ E+ +
Sbjct: 222 FTKKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLD 281

Query: 243 EEEEEEEEEEEE 254
           + E  +E+++EE
Sbjct: 282 KLEILKEKKDEE 293

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 23/73 (31%), Positives = 44/73 (60%)

Query: 182 PFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
           PF+ ++ +E  E EE EEE + E E   E +  ++E+E   EE+     EE+E+ ++ E+
Sbjct: 220 PFFTKKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTED 279

Query: 242 EEEEEEEEEEEEE 254
            ++ E  +E+++E
Sbjct: 280 LDKLEILKEKKDE 292

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 22/67 (32%), Positives = 39/67 (58%)

Query: 200 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEE 259
           +E  E EE EEE + E E   E +  ++E+E   EE+     EE+E+ ++ E+ +  E  
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEIL 286

Query: 260 EEEEEEE 266
           +E+++EE
Sbjct: 287 KEKKDEE 293

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 22/72 (30%), Positives = 40/72 (55%)

Query: 177 LTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 236
            T  +    E EE EEE + E E   E +  ++E+E   EE+     EE+E+ ++ E+ +
Sbjct: 222 FTKKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLD 281

Query: 237 EEEEEEEEEEEE 248
           + E  +E+++EE
Sbjct: 282 KLEILKEKKDEE 293

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 24/89 (26%), Positives = 46/89 (51%)

Query: 182 PFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
              +  E EEE+E++ EE +++E+E E  E+ E E E + E+ EE+E+E++ E  E    
Sbjct: 640 RHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVP 699

Query: 242 EEEEEEEEEEEEEGEEEEEEEEEEEEEEE 270
            ++       +     +  +  + E+EE 
Sbjct: 700 IDKAVRRALPKVLNLPDALDGGDSEDEEG 728

This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localised exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units. Length = 784

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 12/86 (13%), Positives = 60/86 (69%)

Query: 169 DNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 228
           +     D L ++       + +++++++++++ ++++ ++++++E+++E++++++ ++E+
Sbjct: 110 NALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDED 169

Query: 229 EEEEEEEEEEEEEEEEEEEEEEEEEE 254
           EE++E +E E+  ++++   +E++ E
Sbjct: 170 EEKKEAKELEKLSDDDDFVWDEDDSE 195

Length = 509

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 16/85 (18%), Positives = 28/85 (32%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           E     EE  E + E E+  +   +     + + E      EE      E  +E E E  
Sbjct: 358 ESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVP 417

Query: 248 EEEEEEEGEEEEEEEEEEEEEEEEA 272
           E+        + +E       ++ A
Sbjct: 418 EKAAPIPDPAKPDELAVAGPGDDPA 442

Length = 460

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 15/82 (18%), Positives = 29/82 (35%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EE  E + E E+  +   +     + + E      EE      E  +E E E  E+    
Sbjct: 364 EETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPI 423

Query: 246 EEEEEEEEEGEEEEEEEEEEEE 267
            +  + +E       ++  E +
Sbjct: 424 PDPAKPDELAVAGPGDDPAEPD 445

Length = 460

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 15/82 (18%), Positives = 29/82 (35%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           EE  E + E E+  +   +     + + E      EE      E  +E E E  E+    
Sbjct: 364 EETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPI 423

Query: 247 EEEEEEEEGEEEEEEEEEEEEE 268
            +  + +E       ++  E +
Sbjct: 424 PDPAKPDELAVAGPGDDPAEPD 445

Length = 460

>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 29/87 (33%), Positives = 44/87 (50%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            +E  E   E  +E  +  E+E+  E EEE+ E +  +EE ++ + E +  EE  +E E 
Sbjct: 1   LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEA 60

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           +     E  G EEEEEE + E  E  A
Sbjct: 61  KPAASGEGGGGEEEEEEAKAEAAEFRA 87

This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease [Mobile and extrachromosomal element functions, Prophage functions]. Length = 384

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 18/91 (19%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            EE+ +++E+++ EE ++++  E+E  ++ E+E    +E++++ EE  ++   ++++ EE
Sbjct: 77  AEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEE 136

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEE---EEEA 272
              +     + + E E +           EA
Sbjct: 137 AAAKAAAAAKAKAEAEAKRAAAAAKKAAAEA 167

Length = 387

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 51.6 bits (123), Expect = 2e-07
 Identities = 24/75 (32%), Positives = 49/75 (65%)

Query: 206 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEE 265
            EE+    +    ++++E+E+E++++EE++EEEEEEEEE +  ++E+EE E  E+   E+
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEK 200

Query: 266 EEEEEEALWGYADMG 280
            E ++   + + + G
Sbjct: 201 SEVDKTDCFKFIEAG 215

Length = 2849

>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function unknown]

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 27/91 (29%), Positives = 49/91 (53%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
           FY+ +  E+EEEE+ +  +EE      ++++ +E + EE   +EE   ++ E  EE   E
Sbjct: 387 FYQAKWAEDEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPE 446

Query: 243 EEEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           EEE +  E  +  +E+ E  +E E +  E+ 
Sbjct: 447 EEERQLREFRDMEKEDREFPDEAELQPSESA 477

Length = 769

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 33/87 (37%), Positives = 55/87 (63%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
            ++   +E+E ++ +++E  E EE +EEE+E    E++E++ + E+E+EE EEE EEE+E
Sbjct: 41  SDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDE 100

Query: 248 EEEEEEEGEEEEEEEEEEEEEEEEALW 274
           E  +E E E EE+ E   E+E     W
Sbjct: 101 ESSDENEKETEEKTESNVEKEITNPSW 127

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 20/76 (26%), Positives = 41/76 (53%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
           +  EE  +E E  + E+ E+E++ +E+E++++ EEEE    +   E+ +   EE E  E 
Sbjct: 207 DMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEM 266

Query: 253 EEGEEEEEEEEEEEEE 268
           E  E   ++  + ++ 
Sbjct: 267 EAAEASADDTPDSDDA 282

This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282

>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

 Score = 51.6 bits (123), Expect = 2e-07
 Identities = 23/71 (32%), Positives = 41/71 (57%)

Query: 202 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEE 261
            ++E +E EEE  E E   ++E +E +E+EE +E  E+  E+E E +  +EE+GE+ +E 
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDEL 986

Query: 262 EEEEEEEEEEA 272
           E +   +    
Sbjct: 987 ESKAAYDSRPG 997

Length = 1001

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 51.1 bits (122), Expect = 3e-07
 Identities = 36/88 (40%), Positives = 50/88 (56%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           + E E E E  E+E E E  EE EE E+E E E E + E E E + +E E E E E E +
Sbjct: 716 EHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGK 775

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E+E+E E + GE+ E + +E  E + E 
Sbjct: 776 EDEDEGEIQAGEDGEMKGDEGAEGKVEH 803

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 51.1 bits (122), Expect = 3e-07
 Identities = 35/85 (41%), Positives = 47/85 (55%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            E E E E E  E+E E E  EE EE E+E E E E + E E E + +E E E E E E 
Sbjct: 715 VEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEG 774

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEE 269
           +E+E+E E +  E+ E + +E  E 
Sbjct: 775 KEDEDEGEIQAGEDGEMKGDEGAEG 799

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 51.1 bits (122), Expect = 3e-07
 Identities = 35/86 (40%), Positives = 48/86 (55%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E E  EE EE E+E E E E + E E E + +E E E E E E +E+E+E E +  E+ E
Sbjct: 731 EIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGE 790

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
            + +E  E   E E E E  E++E E
Sbjct: 791 MKGDEGAEGKVEHEGETEAGEKDEHE 816

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 51.1 bits (122), Expect = 3e-07
 Identities = 34/87 (39%), Positives = 41/87 (47%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
             E   EE E   E E E  EE   E E+E E E + E E E E   E + E+E E E E
Sbjct: 641 TGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIE 700

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            +E + + E   EE E E E E E  E
Sbjct: 701 AKEADHKGETEAEEVEHEGETEAEGTE 727

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 30/72 (41%), Positives = 49/72 (68%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E EE+E+ ++E E  + E ++E E  + E+EEE++E  ++ +E+ +EE  EE+EEE  EE
Sbjct: 105 EVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEE 164

Query: 246 EEEEEEEEEGEE 257
           EE E E+E+  E
Sbjct: 165 EEAEAEKEKASE 176

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 51.5 bits (123), Expect = 3e-07
 Identities = 24/88 (27%), Positives = 50/88 (56%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            KEE + E++E  ++E+  EE    +E+ ++++  +  E++E+  E+  EE  +E EE  E
Sbjct: 4020 KEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTE 4079

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            +  + +EE E  E  E++  +   + +A
Sbjct: 4080 DGVKSDEELEQGEVPEDQAIDNHPKMDA 4107

Length = 4600

>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit

 Score = 51.1 bits (122), Expect = 3e-07
 Identities = 26/84 (30%), Positives = 47/84 (55%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
           E  EE  ++ E E+EE+ ++++  E E+EE+ E E E +E    +E E  + E E  EEE
Sbjct: 198 ELAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEE 257

Query: 249 EEEEEEGEEEEEEEEEEEEEEEEA 272
             + ++ +  +E +++ E   E A
Sbjct: 258 MVQSDQDDLPDESDDDSETPGEGA 281

This model describes Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit that functions in cobalamin biosynthesis. Cobalamin (vitamin B12) can be synthesized via several pathways, including an aerobic pathway (found in Pseudomonas denitrificans) and an anaerobic pathway (found in P. shermanii and Salmonella typhimurium). These pathways differ in the point of cobalt insertion during corrin ring formation. There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction. Confusion regarding the functions of enzymes found in the aerobic vs. anaerobic pathways has arisen because nonhomologous genes in these different pathways were given the same gene symbols. Thus, cobT in the aerobic pathway (P. denitrificans) is not a homolog of cobT in the anaerobic pathway (S. typhimurium). It should be noted that E. coli synthesizes cobalamin only when it is supplied with the precursor cobinamide, which is a complex intermediate. Additionally, all E. coli cobalamin synthesis genes (cobU, cobS and cobT) were named after their Salmonella typhimurium homologs which function in the anaerobic cobalamin synthesis pathway. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 600

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 11/87 (12%), Positives = 64/87 (73%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K E++   +++++    ++ +   + +++++++++++ ++++ ++++++E+++E++++++
Sbjct: 105 KAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDD 164

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            ++E+EE++E +E E+  ++++   +E
Sbjct: 165 VDDEDEEKKEAKELEKLSDDDDFVWDE 191

Length = 509

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 50.7 bits (121), Expect = 3e-07
 Identities = 20/117 (17%), Positives = 36/117 (30%)

Query: 162 ANSCNVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 221
           A    V+D   +  V+       +     EE  E + E E+  +   +     + + E  
Sbjct: 335 AEVAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAA 394

Query: 222 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEALWGYAD 278
               EE      E  +E E E  E+     +    +E       ++  E       D
Sbjct: 395 SAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPAEPDGIRRQD 451

Length = 460

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 17/88 (19%), Positives = 47/88 (53%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KE+++ EE ++++  E+E  ++ E+E    +E++++ EE  ++   ++++ EE   +   
Sbjct: 84  KEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAA 143

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
             + + E E        ++   E +++A
Sbjct: 144 AAKAKAEAEAKRAAAAAKKAAAEAKKKA 171

Length = 387

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 51.2 bits (122), Expect = 3e-07
 Identities = 24/67 (35%), Positives = 48/67 (71%)

Query: 204 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEE 263
            EE+    +    ++++E+E+E++++EE++EEEEEEEEE +  ++E+EE+EG E+   E+
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEK 200

Query: 264 EEEEEEE 270
            E ++ +
Sbjct: 201 SEVDKTD 207

Length = 2849

>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 20/76 (26%), Positives = 41/76 (53%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253
           +  EE  +E E  + E+ E+E++ +E+E++++ EEEE    +   E+ +   EE E  E 
Sbjct: 207 DMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEM 266

Query: 254 EGEEEEEEEEEEEEEE 269
           E  E   ++  + ++ 
Sbjct: 267 EAAEASADDTPDSDDA 282

This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 50.7 bits (121), Expect = 3e-07
 Identities = 12/88 (13%), Positives = 19/88 (21%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
               EE       E       E                  E    E       ++     
Sbjct: 108 SGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFL 167

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           +   E+  EE E    E E +     ++
Sbjct: 168 QPSHEDSPEEPEPPTSEPEPDSPGPPQS 195

Length = 413

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 27/78 (34%), Positives = 54/78 (69%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEG 255
           E+ +EEE +++E E+  E +++++EEEE E EE+E+ ++E E  + E ++E E  + E+ 
Sbjct: 76  EKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDE 135

Query: 256 EEEEEEEEEEEEEEEEAL 273
           EE++E  ++ +E+ +E L
Sbjct: 136 EEKDEAAKKAKEDSDEEL 153

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 23/59 (38%), Positives = 31/59 (52%)

Query: 182 PFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240
              +EE  + E EE  E E+ E  EE+    E     E+E E+E+E EE + EEEEE  
Sbjct: 391 QREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449

Length = 449

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 22/67 (32%), Positives = 39/67 (58%)

Query: 201 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEE 260
           +E  E EE EEE + E E   E +  ++E+E   EE+     EE+E+ ++ E+  + E  
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEIL 286

Query: 261 EEEEEEE 267
           +E+++EE
Sbjct: 287 KEKKDEE 293

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 22/71 (30%), Positives = 41/71 (57%)

Query: 206 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEE 265
           +E  E EE EEE + E E   E +  ++E+E   EE+     EE+E+ +  E+ ++ E  
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEIL 286

Query: 266 EEEEEEALWGY 276
           +E+++E L+ +
Sbjct: 287 KEKKDEELFWF 297

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 10/77 (12%), Positives = 58/77 (75%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
           Y ++ +   + +++++++++++ ++++ ++++++E+++E++++++ ++E+EE++E +E E
Sbjct: 120 YVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELE 179

Query: 244 EEEEEEEEEEEGEEEEE 260
           +  ++++   + ++ E 
Sbjct: 180 KLSDDDDFVWDEDDSEA 196

Length = 509

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 10/87 (11%), Positives = 63/87 (72%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            E++   +++++    ++ +   + +++++++++++ ++++ ++++++E+++E++++++ 
Sbjct: 106 AEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDV 165

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           ++E+EE++E  E E+  ++++   +E+
Sbjct: 166 DDEDEEKKEAKELEKLSDDDDFVWDED 192

Length = 509

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 10/75 (13%), Positives = 56/75 (74%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
              +   + +++++++++++ ++++ ++++++E+++E++++++ ++E+EE++E +E E+ 
Sbjct: 122 KDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKL 181

Query: 243 EEEEEEEEEEEEGEE 257
            ++++   +E++ E 
Sbjct: 182 SDDDDFVWDEDDSEA 196

Length = 509

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 10/94 (10%), Positives = 64/94 (68%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K+ E++   +++++    ++ +   + +++++++++++ ++++ ++++++E+++E+++++
Sbjct: 104 KKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDD 163

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEALWGYAD 278
           + ++E+EE++  +E E+  ++++   +     A 
Sbjct: 164 DVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEAL 197

Length = 509

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 9/94 (9%), Positives = 65/94 (69%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            E +  ++ E++   +++++    ++ +   + +++++++++++ ++++ ++++++E+++
Sbjct: 98  DELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDD 157

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEALWGYAD 278
           E++++++ ++ +EE++E +E E+  ++  + + +
Sbjct: 158 EDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDE 191

Length = 509

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 16/79 (20%), Positives = 46/79 (58%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254
           EE+ +++E+++ EE ++++  E+E  ++ E+E    +E++++ EE  ++   ++++ EE 
Sbjct: 78  EEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEA 137

Query: 255 GEEEEEEEEEEEEEEEEAL 273
             +     + + E E +  
Sbjct: 138 AAKAAAAAKAKAEAEAKRA 156

Length = 387

>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function unknown]

 Score = 50.8 bits (121), Expect = 4e-07
 Identities = 27/91 (29%), Positives = 48/91 (52%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
           +  +  E+EEEE+ +  +EE      ++++ +E + EE   +EE   ++ E  EE   EE
Sbjct: 388 YQAKWAEDEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEE 447

Query: 243 EEEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           EE +  E  + E E+ E  +E E +  E A+
Sbjct: 448 EERQLREFRDMEKEDREFPDEAELQPSESAI 478

Length = 769

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 32/84 (38%), Positives = 53/84 (63%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +   +E+E ++ +++E  E EE +EEE+E    E++E++ + E+E+EE EEE EEE+EE 
Sbjct: 43  QAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEES 102

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEE 268
            +E E+E EE  E   E+E     
Sbjct: 103 SDENEKETEEKTESNVEKEITNPS 126

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 49.0 bits (117), Expect = 4e-07
 Identities = 33/92 (35%), Positives = 56/92 (60%)

Query: 180 MMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 239
             P    ++   +E+E ++ +++E  E EE +EEE+E    E++E++ + E+E+EE EEE
Sbjct: 35  FFPSSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEE 94

Query: 240 EEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            EEE+EE  +E E+E EE+ E   E+E     
Sbjct: 95  NEEEDEESSDENEKETEEKTESNVEKEITNPS 126

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 50.4 bits (120), Expect = 4e-07
 Identities = 13/87 (14%), Positives = 19/87 (21%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EE       E       E                  E    E       ++     +   
Sbjct: 112 EELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSH 171

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E+  EE E    E E +     + E  
Sbjct: 172 EDSPEEPEPPTSEPEPDSPGPPQSETP 198

Length = 413

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 50.3 bits (120), Expect = 5e-07
 Identities = 35/86 (40%), Positives = 46/86 (53%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EEEEEEE+E EEEE E+EEEEEE E +   EEE E   E + + EE EE+ E    E   
Sbjct: 453 EEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAG 512

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
                E ++      + E  +EE  +
Sbjct: 513 ISRMSEGQQPRGSSVQPESPQEEPLQ 538

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 50.4 bits (120), Expect = 5e-07
 Identities = 21/88 (23%), Positives = 52/88 (59%)

Query: 186  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            E+ + +E+E +  ++ + E+ + E  +E +EE + E++E  ++E+  EE    +E+ +++
Sbjct: 3991 EDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQD 4050

Query: 246  EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            +  +  E++ +  E+  EE  +E EE+ 
Sbjct: 4051 DFSDLAEDDEKMNEDGFEENVQENEEST 4078

Length = 4600

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query: 202 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEE 261
           +E  E EE EEE + E E   E +  ++E+E   EE+     EE+E+ ++ E+ ++ E  
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEIL 286

Query: 262 EEEEEEE 268
           +E+++EE
Sbjct: 287 KEKKDEE 293

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 21/67 (31%), Positives = 39/67 (58%)

Query: 198 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEE 257
           +E  E EE EEE + E E   E +  ++E+E   EE+     EE+E+ ++ E+ ++    
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEIL 286

Query: 258 EEEEEEE 264
           +E+++EE
Sbjct: 287 KEKKDEE 293

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 27/86 (31%), Positives = 41/86 (47%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KE  E   E  +E  +  E+E+  E EEE+ E +  +EE ++ + E +  EE  +E E +
Sbjct: 2   KELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAK 61

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEE 270
                E     EEEEE + E  E   
Sbjct: 62  PAASGEGGGGEEEEEEAKAEAAEFRA 87

This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease [Mobile and extrachromosomal element functions, Prophage functions]. Length = 384

>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 26/88 (29%), Positives = 41/88 (46%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
            +E  E   E  +E  +  E+E+  E EEE+ E +  +EE ++ + E +  EE  +E E 
Sbjct: 1   LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEA 60

Query: 249 EEEEEEGEEEEEEEEEEEEEEEEALWGY 276
           +          EEEEEE + E      Y
Sbjct: 61  KPAASGEGGGGEEEEEEAKAEAAEFRAY 88

This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease [Mobile and extrachromosomal element functions, Prophage functions]. Length = 384

>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT

 Score = 49.4 bits (118), Expect = 5e-07
 Identities = 20/78 (25%), Positives = 40/78 (51%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
             +  EE  +E E  + E+ E+E++ +E+E++++ EEEE    +   E+ +   EE E  
Sbjct: 205 SMDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESG 264

Query: 245 EEEEEEEEEEGEEEEEEE 262
           E E  E   +   + ++ 
Sbjct: 265 EMEAAEASADDTPDSDDA 282

This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282

>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT

 Score = 49.4 bits (118), Expect = 5e-07
 Identities = 24/95 (25%), Positives = 46/95 (48%)

Query: 166 NVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 225
            V D      V+  M+      EE  +E E  + E+ E+E++ +E+E++++ EEEE    
Sbjct: 188 CVDDQQAFARVVRDMLSSMDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSS 247

Query: 226 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEE 260
           +   E+ +   EE E  E E  E   ++  + ++ 
Sbjct: 248 DSLSEDSDASSEEMESGEMEAAEASADDTPDSDDA 282

This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282

>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT

 Score = 49.4 bits (118), Expect = 5e-07
 Identities = 20/76 (26%), Positives = 41/76 (53%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
           +  EE  +E E  + E+ E+E++ +E+E++++ EEEE    +   E+ +   EE E  E 
Sbjct: 207 DMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEM 266

Query: 251 EEEEGEEEEEEEEEEE 266
           E  E   ++  + ++ 
Sbjct: 267 EAAEASADDTPDSDDA 282

This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 25/72 (34%), Positives = 46/72 (63%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           +++  + +E E++   +     E E+   E ++EEEE+EEEEEEE+E+E   +E  ++EE
Sbjct: 358 KQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEE 417

Query: 248 EEEEEEEGEEEE 259
            EE++ E + E+
Sbjct: 418 FEEDDVESKYED 429

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 50.4 bits (120), Expect = 6e-07
 Identities = 33/87 (37%), Positives = 49/87 (56%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E EE E+E E E E + E E E + +E E E E E E +E+E+E E +  E+ E + +E 
Sbjct: 737 EGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEG 796

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            E + E E   E  E++E E + E +A
Sbjct: 797 AEGKVEHEGETEAGEKDEHEGQSETQA 823

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 49.9 bits (119), Expect = 6e-07
 Identities = 35/88 (39%), Positives = 48/88 (54%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EEEEE+E EEEE E+EEEEEE E +   EEE E   E + + EE EE+ E    E     
Sbjct: 455 EEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGIS 514

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
              E ++  G   + E  +EE  + E++
Sbjct: 515 RMSEGQQPRGSSVQPESPQEEPLQPESM 542

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEG 255
           +E  E EE EEE + E E   E +  ++E+E   EE+     EE+E+ ++ E+ ++ E  
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEIL 286

Query: 256 EEEEEEE 262
           +E+++EE
Sbjct: 287 KEKKDEE 293

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query: 199 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEE 258
           +E  E EE EEE + E E   E +  ++E+E   EE+     EE+E+ ++ E+ ++ E  
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEIL 286

Query: 259 EEEEEEE 265
           +E+++EE
Sbjct: 287 KEKKDEE 293

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 9/94 (9%), Positives = 64/94 (68%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
             ++ E++   +++++    ++ +   + +++++++++++ ++++ ++++++E+++E+++
Sbjct: 102 SSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDD 161

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEALWGYAD 278
           +++ ++E+EE +E +E E+  ++++       ++
Sbjct: 162 DDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSE 195

Length = 509

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 12/94 (12%), Positives = 64/94 (68%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K+E +  ++ E++   +++++    ++ +   + +++++++++++ ++++ ++++++E++
Sbjct: 97  KDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDD 156

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEALWGYAD 278
           +E++++++ + E+EE++E +E E+  +      D
Sbjct: 157 DEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWD 190

Length = 509

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 49.8 bits (119), Expect = 6e-07
 Identities = 17/82 (20%), Positives = 47/82 (57%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
           EE+ +++E+++ EE ++++  E+E  ++ E+E    +E++++ EE  ++   ++++ EE 
Sbjct: 78  EEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEA 137

Query: 252 EEEGEEEEEEEEEEEEEEEEAL 273
             +     + + E E +   A 
Sbjct: 138 AAKAAAAAKAKAEAEAKRAAAA 159

Length = 387

>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT

 Score = 49.4 bits (118), Expect = 6e-07
 Identities = 21/74 (28%), Positives = 41/74 (55%)

Query: 198 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEE 257
           +  EE  +E E  + E+ E+E++ +E+E++++ EEEE    +   E+ +   EE E GE 
Sbjct: 207 DMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEM 266

Query: 258 EEEEEEEEEEEEEE 271
           E  E   ++  + +
Sbjct: 267 EAAEASADDTPDSD 280

This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282

>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

 Score = 50.0 bits (119), Expect = 6e-07
 Identities = 22/70 (31%), Positives = 40/70 (57%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            ++E +E EEE  E E   ++E +E +E+EE +E  E+  E+E E +  +EE+ E+ +E 
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDEL 986

Query: 246 EEEEEEEEEG 255
           E +   +   
Sbjct: 987 ESKAAYDSRP 996

Length = 1001

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 26/65 (40%), Positives = 42/65 (64%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KE E++   +     E E+   E ++EEEE+EEEEEEE+E+E   +E  ++EE EE++ E
Sbjct: 365 KETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVE 424

Query: 245 EEEEE 249
            + E+
Sbjct: 425 SKYED 429

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 29/86 (33%), Positives = 55/86 (63%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           EEE  +     E  E+ +EEE +++E E+  E +++++EEEE E EE+E+ ++E E  + 
Sbjct: 62  EEEVVDGIPGLELLEKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDV 121

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E ++E E  + E+EEE++E  ++ + 
Sbjct: 122 ESDKEIESSDSEDEEEKDEAAKKAKE 147

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 50.0 bits (119), Expect = 7e-07
 Identities = 26/137 (18%), Positives = 67/137 (48%), Gaps = 16/137 (11%)

Query: 159  TDEANSCNVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 218
            T++ ++   + N+ S  V         E+++ +E+E+EEE  ++   ++E + + +E   
Sbjct: 3919 TEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNS 3978

Query: 219  E----------------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEE 262
            +                +E+E +  ++ + E+ + E  +E +EE + E++E  ++E+  E
Sbjct: 3979 QPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLE 4038

Query: 263  EEEEEEEEEALWGYADM 279
            E    +E+     ++D+
Sbjct: 4039 ENNTLDEDIQQDDFSDL 4055

Length = 4600

>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT

 Score = 49.0 bits (117), Expect = 7e-07
 Identities = 20/76 (26%), Positives = 41/76 (53%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
           +  EE  +E E  + E+ E+E++ +E+E++++ EEEE    +   E+ +   EE E  E 
Sbjct: 207 DMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEM 266

Query: 250 EEEEEGEEEEEEEEEE 265
           E  E   ++  + ++ 
Sbjct: 267 EAAEASADDTPDSDDA 282

This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 49.6 bits (118), Expect = 7e-07
 Identities = 15/87 (17%), Positives = 28/87 (32%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
             ++     +   E+  EE E    E E +     + E        +   +E  E +   
Sbjct: 159 PNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPT 218

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            ++       +  E E+E  E E E  
Sbjct: 219 PQQAPSPNTQQAVEHEDEPTEPEREGP 245

Length = 413

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 26/71 (36%), Positives = 44/71 (61%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K  + +E E++   +     E E+   E ++EEEE+EEEEEEE+E+E   +E  ++EE E
Sbjct: 360 KWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFE 419

Query: 245 EEEEEEEEEEG 255
           E++ E + E+ 
Sbjct: 420 EDDVESKYEDS 430

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 49.8 bits (119), Expect = 7e-07
 Identities = 26/72 (36%), Positives = 46/72 (63%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
           + + +E E++   +     E E+   E ++EEEE+EEEEEEE+E+E   +E  ++EE EE
Sbjct: 361 WTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEE 420

Query: 244 EEEEEEEEEEEG 255
           ++ E + E+ +G
Sbjct: 421 DDVESKYEDSDG 432

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT

 Score = 49.0 bits (117), Expect = 8e-07
 Identities = 20/76 (26%), Positives = 41/76 (53%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
           +  EE  +E E  + E+ E+E++ +E+E++++ EEEE    +   E+ +   EE E  E 
Sbjct: 207 DMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEM 266

Query: 249 EEEEEEGEEEEEEEEE 264
           E  E   ++  + ++ 
Sbjct: 267 EAAEASADDTPDSDDA 282

This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282

>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

 Score = 49.6 bits (118), Expect = 8e-07
 Identities = 23/71 (32%), Positives = 42/71 (59%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           ++E +E EEE  E E   ++E +E +E+EE +E  E+  E+E E +  +EE+ E+ +E E
Sbjct: 928 DDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELE 987

Query: 246 EEEEEEEEEGE 256
            +   +   G+
Sbjct: 988 SKAAYDSRPGK 998

Length = 1001

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 49.6 bits (118), Expect = 8e-07
 Identities = 12/86 (13%), Positives = 16/86 (18%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
                     EE       E       E                  E    E       +
Sbjct: 102 SPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQ 161

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
           +     +   E+  EE E    E E 
Sbjct: 162 QPSSFLQPSHEDSPEEPEPPTSEPEP 187

Length = 413

>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated

 Score = 49.5 bits (119), Expect = 8e-07
 Identities = 23/82 (28%), Positives = 39/82 (47%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           EE  E E  +EE  EE  E  +E  E E   +EE+  ++    E  + E   +  E+  +
Sbjct: 389 EELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIK 448

Query: 247 EEEEEEEEGEEEEEEEEEEEEE 268
             E+  E+  +E  + E +EE+
Sbjct: 449 TLEDLAEQAVDELIDIEGDEEK 470

Length = 470

>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated

 Score = 49.5 bits (119), Expect = 8e-07
 Identities = 26/82 (31%), Positives = 34/82 (41%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
           EEEE  +EE + E EEE + E EE    E EEE + E       EE  E     E     
Sbjct: 39  EEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARP 98

Query: 251 EEEEGEEEEEEEEEEEEEEEEA 272
            E+E     E      + ++ A
Sbjct: 99  AEDEAARPAEAAARRPKAKKAA 120

Length = 746

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 49.6 bits (118), Expect = 9e-07
 Identities = 30/87 (34%), Positives = 48/87 (55%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            E+E E E E + E E E + +E E E E E E +E+E+E E +  E+ E + +E  E +
Sbjct: 741 VEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGK 800

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            E E E E   ++E E + E + ++ E
Sbjct: 801 VEHEGETEAGEKDEHEGQSETQADDTE 827

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 22/67 (32%), Positives = 39/67 (58%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
           +E  E EE EEE + E E   E +  ++E+E   EE+     EE+E+ ++ E+ ++ E  
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEIL 286

Query: 251 EEEEGEE 257
           +E++ EE
Sbjct: 287 KEKKDEE 293

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi

 Score = 49.5 bits (118), Expect = 9e-07
 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 12/99 (12%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K   ++  E EEE+E++ EE +++E+E E  E+ E E E + E+ EE+E+E++ E  E  
Sbjct: 638 KSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGV 697

Query: 245 EEEEEEEEEE------------GEEEEEEEEEEEEEEEE 271
              ++                 G + E+EE  ++E+   
Sbjct: 698 VPIDKAVRRALPKVLNLPDALDGGDSEDEEGMDDEQMMR 736

This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localised exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units. Length = 784

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 49.4 bits (118), Expect = 9e-07
 Identities = 27/83 (32%), Positives = 50/83 (60%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
           E   +++  + +E E++   +     E E+   E ++EEEE+EEEEEEE+E+E   +E  
Sbjct: 354 ETLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHS 413

Query: 251 EEEEGEEEEEEEEEEEEEEEEAL 273
           ++EE EE++ E + E+ +   +L
Sbjct: 414 DDEEFEEDDVESKYEDSDGNSSL 436

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated

 Score = 49.5 bits (119), Expect = 9e-07
 Identities = 25/86 (29%), Positives = 36/86 (41%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           EEEE  +EE + E EEE + E EE    E EEE + E       EE  E     E     
Sbjct: 39  EEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARP 98

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEEA 272
            E+E     E      + ++  +++ 
Sbjct: 99  AEDEAARPAEAAARRPKAKKAAKKKK 124

Length = 746

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 31/87 (35%), Positives = 50/87 (57%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +E E+E E E E + E E E + +E E E E E E +E+E+E E +  E+ E + +E  E
Sbjct: 739 EEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAE 798

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            + E E E E  E++E E + E + ++
Sbjct: 799 GKVEHEGETEAGEKDEHEGQSETQADD 825

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 31/82 (37%), Positives = 40/82 (48%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
           + +  E E   E   EE E   E E E  EE   E E+E E E + E E E E   E + 
Sbjct: 632 KGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKG 691

Query: 250 EEEEEGEEEEEEEEEEEEEEEE 271
           E+E EGE E +E + + E E E
Sbjct: 692 EQEGEGEIEAKEADHKGETEAE 713

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 29/86 (33%), Positives = 54/86 (62%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           EEE  +     E  E+ +EEE +++E E+  E +++++EEEE E EE+E+ ++E E  + 
Sbjct: 62  EEEVVDGIPGLELLEKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDV 121

Query: 248 EEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E ++E E  + E+EEE++E  ++   
Sbjct: 122 ESDKEIESSDSEDEEEKDEAAKKAKE 147

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 21/97 (21%), Positives = 49/97 (50%), Gaps = 5/97 (5%)

Query: 163 NSCNVSDNS-----GSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 217
           N  NV  +         D+   +    + ++   + EE+++++EE +EE+EE  + E++E
Sbjct: 88  NLDNVFGSDQVVIFDDGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDE 147

Query: 218 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254
           ++++++++++    E   E      E EE+  E E  
Sbjct: 148 DDDDDDDDDDIATRERSLERRRRRREWEEKRAELEFY 184

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 22/67 (32%), Positives = 39/67 (58%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254
           +E  E EE EEE + E E   E +  ++E+E   EE+     EE+E+ ++ E+ ++ E  
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEIL 286

Query: 255 GEEEEEE 261
            E+++EE
Sbjct: 287 KEKKDEE 293

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 21/67 (31%), Positives = 39/67 (58%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253
           +E  E EE EEE + E E   E +  ++E+E   EE+     EE+E+ ++ E+ ++ E  
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEIL 286

Query: 254 EGEEEEE 260
           + +++EE
Sbjct: 287 KEKKDEE 293

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 22/67 (32%), Positives = 39/67 (58%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
           +E  E EE EEE + E E   E +  ++E+E   EE+     EE+E+ ++ E+ ++ E  
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEIL 286

Query: 253 EEGEEEE 259
           +E ++EE
Sbjct: 287 KEKKDEE 293

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 12/88 (13%), Positives = 56/88 (63%)

Query: 161 EANSCNVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 220
           +       D +   D+         ++++++++ ++++ ++++++E+++E++++++ ++E
Sbjct: 109 KNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDE 168

Query: 221 EEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
           +EE++E +E E+  ++++   +E++ E 
Sbjct: 169 DEEKKEAKELEKLSDDDDFVWDEDDSEA 196

Length = 509

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 13/89 (14%), Positives = 29/89 (32%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E E+  +   +     + + E      EE      E  +E E E  E+     +  + +E
Sbjct: 372 EREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDE 431

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEALW 274
                  ++  E +    +++       W
Sbjct: 432 LAVAGPGDDPAEPDGIRRQDDFSSRRRRW 460

Length = 460

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 23/67 (34%), Positives = 47/67 (70%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            EE+    +    ++++E+E+E++++EE++EEEEEEEEE +  ++E+EE+E  E+   E+
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEK 200

Query: 246 EEEEEEE 252
            E ++ +
Sbjct: 201 SEVDKTD 207

Length = 2849

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 23/67 (34%), Positives = 47/67 (70%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
            EE+    +    ++++E+E+E++++EE++EEEEEEEEE +  ++E+EE+E  E+   E+
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEK 200

Query: 247 EEEEEEE 253
            E ++ +
Sbjct: 201 SEVDKTD 207

Length = 2849

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 23/67 (34%), Positives = 47/67 (70%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
            EE+    +    ++++E+E+E++++EE++EEEEEEEEE +  ++E+EE+E  E+   E+
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEK 200

Query: 248 EEEEEEE 254
            E ++ +
Sbjct: 201 SEVDKTD 207

Length = 2849

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 23/67 (34%), Positives = 47/67 (70%)

Query: 200 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEE 259
            EE+    +    ++++E+E+E++++EE++EEEEEEEEE +  ++E+EE+E  E+   E+
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEK 200

Query: 260 EEEEEEE 266
            E ++ +
Sbjct: 201 SEVDKTD 207

Length = 2849

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 23/67 (34%), Positives = 47/67 (70%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254
            EE+    +    ++++E+E+E++++EE++EEEEEEEEE +  ++E+EE+E  E+   E+
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEK 200

Query: 255 GEEEEEE 261
            E ++ +
Sbjct: 201 SEVDKTD 207

Length = 2849

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 23/67 (34%), Positives = 47/67 (70%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
            EE+    +    ++++E+E+E++++EE++EEEEEEEEE +  ++E+EE+E  E+   E+
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEK 200

Query: 253 EEGEEEE 259
            E ++ +
Sbjct: 201 SEVDKTD 207

Length = 2849

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 23/67 (34%), Positives = 47/67 (70%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
            EE+    +    ++++E+E+E++++EE++EEEEEEEEE +  ++E+EE+E  E+   E+
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEK 200

Query: 250 EEEEEGE 256
            E ++ +
Sbjct: 201 SEVDKTD 207

Length = 2849

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 23/67 (34%), Positives = 47/67 (70%)

Query: 199 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEE 258
            EE+    +    ++++E+E+E++++EE++EEEEEEEEE +  ++E+EE+E  E+   E+
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEK 200

Query: 259 EEEEEEE 265
            E ++ +
Sbjct: 201 SEVDKTD 207

Length = 2849

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 23/67 (34%), Positives = 47/67 (70%)

Query: 198 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEE 257
            EE+    +    ++++E+E+E++++EE++EEEEEEEEE +  ++E+EE+E  E+   E+
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEK 200

Query: 258 EEEEEEE 264
            E ++ +
Sbjct: 201 SEVDKTD 207

Length = 2849

>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function unknown]

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 28/91 (30%), Positives = 47/91 (51%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E+EEEE+ +  +EE      ++++ +E + EE   +EE   ++ E  EE   EEEE +  
Sbjct: 394 EDEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLR 453

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEALWGY 276
           E  + E+E+ E  +E E +  E   E    Y
Sbjct: 454 EFRDMEKEDREFPDEAELQPSESAIERYKEY 484

Length = 769

>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 22/69 (31%), Positives = 40/69 (57%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
            ++E +E EEE  E E   ++E +E +E+EE +E  E+  E+E E +  +EE+ E+ +E 
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDEL 986

Query: 251 EEEEGEEEE 259
           E +   +  
Sbjct: 987 ESKAAYDSR 995

Length = 1001

>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 22/69 (31%), Positives = 40/69 (57%)

Query: 199 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEE 258
            ++E +E EEE  E E   ++E +E +E+EE +E  E+  E+E E +  +EE+ E+ +E 
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDEL 986

Query: 259 EEEEEEEEE 267
           E +   +  
Sbjct: 987 ESKAAYDSR 995

Length = 1001

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 12/87 (13%), Positives = 17/87 (19%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
                 EE       E       E                  E    E       ++   
Sbjct: 106 SPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSS 165

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
             +   E+  EE E    E E +    
Sbjct: 166 FLQPSHEDSPEEPEPPTSEPEPDSPGP 192

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 14/87 (16%), Positives = 28/87 (32%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
                ++     +   E+  EE E    E E +     + E        +   +E  E +
Sbjct: 156 NPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQ 215

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
               ++      ++  E E+E  E E 
Sbjct: 216 SPTPQQAPSPNTQQAVEHEDEPTEPER 242

Length = 413

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 26/76 (34%), Positives = 47/76 (61%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E   +++  + +E E++   +     E E+   E ++EEEE+EEEEEEE+E+E   +E  
Sbjct: 354 ETLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHS 413

Query: 246 EEEEEEEEEGEEEEEE 261
           ++EE EE++ E + E+
Sbjct: 414 DDEEFEEDDVESKYED 429

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 25/72 (34%), Positives = 45/72 (62%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K++  + +E E++   +     E E+   E ++EEEE+EEEEEEE+E+E   +E  ++EE
Sbjct: 358 KQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEE 417

Query: 245 EEEEEEEEEEGE 256
            EE++ E +  +
Sbjct: 418 FEEDDVESKYED 429

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 24/87 (27%), Positives = 39/87 (44%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
            Y   EE  E E  +EE  EE  E  +E  E E   +EE+  ++    E  + E   +  
Sbjct: 384 AYVPVEELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLA 443

Query: 243 EEEEEEEEEEEEGEEEEEEEEEEEEEE 269
           E+  +  E+  E   +E  + E +EE+
Sbjct: 444 EKGIKTLEDLAEQAVDELIDIEGDEEK 470

Length = 470

>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 25/86 (29%), Positives = 51/86 (59%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           EEE+   +  EEE+EEE E        + +++E   E+E+E+EE++EE E   + E  + 
Sbjct: 1   EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKR 60

Query: 248 EEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E+   +E ++++++E ++  E++ A 
Sbjct: 61  EKARLKELKKQKKQEIQKILEQQNAA 86

Length = 1033

>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 26/91 (28%), Positives = 55/91 (60%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           + +E+++EE+E + +  EE+    + ++ +   + +  +++ ++++ E+E      E E+
Sbjct: 94  EGDEDDDEEDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDETAALLRELEK 153

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEALWG 275
            ++E  EE+E EEEE+  EEE+  EEE L G
Sbjct: 154 IKKERAEEKEREEEEKAAEEEKAREEEILTG 184

This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing. Length = 241

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 19/59 (32%), Positives = 36/59 (61%)

Query: 180 MMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 238
           M   ++E    ++EEEE EEE  +E E+E+  E + E +E+++ E  + + E+E+ + E
Sbjct: 84  MWKIFRELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 28/84 (33%), Positives = 51/84 (60%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
           EEE  +     E  E+ +EEE +++E E+  E +++++EEEE E EE+E+ ++E E  + 
Sbjct: 62  EEEVVDGIPGLELLEKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDV 121

Query: 251 EEEEGEEEEEEEEEEEEEEEEALW 274
           E ++  E  + E+EEE++E     
Sbjct: 122 ESDKEIESSDSEDEEEKDEAAKKA 145

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 22/67 (32%), Positives = 39/67 (58%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
           +E  E EE EEE + E E   E +  ++E+E   EE+     EE+E+ ++ E+ ++ E  
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEIL 286

Query: 252 EEEGEEE 258
           +E+ +EE
Sbjct: 287 KEKKDEE 293

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query: 197 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGE 256
           +E  E EE EEE + E E   E +  ++E+E   EE+     EE+E+ ++ E+ ++ E  
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEIL 286

Query: 257 EEEEEEE 263
           +E+++EE
Sbjct: 287 KEKKDEE 293

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 17/87 (19%), Positives = 45/87 (51%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EE ++++  E+E  ++ E+E    +E++++ EE  ++   ++++ EE   +     + + 
Sbjct: 90  EELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKA 149

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E E +      ++   E +++ E E A
Sbjct: 150 EAEAKRAAAAAKKAAAEAKKKAEAEAA 176

Length = 387

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 23/67 (34%), Positives = 46/67 (68%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEG 255
            EE+    +    ++++E+E+E++++EE++EEEEEEEEE +  ++E+EE+E  E+   E 
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEK 200

Query: 256 EEEEEEE 262
            E ++ +
Sbjct: 201 SEVDKTD 207

Length = 2849

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 23/67 (34%), Positives = 46/67 (68%)

Query: 201 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEE 260
            EE+    +    ++++E+E+E++++EE++EEEEEEEEE +  ++E+EE+E  E    E+
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEK 200

Query: 261 EEEEEEE 267
            E ++ +
Sbjct: 201 SEVDKTD 207

Length = 2849

>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 20/76 (26%), Positives = 41/76 (53%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEG 255
           +  EE  +E E  + E+ E+E++ +E+E++++ EEEE    +   E+ +   EE E  E 
Sbjct: 207 DMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEM 266

Query: 256 EEEEEEEEEEEEEEEE 271
           E  E   ++  + ++ 
Sbjct: 267 EAAEASADDTPDSDDA 282

This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282

>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 20/76 (26%), Positives = 40/76 (52%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           +  EE  +E E  + E+ E+E++ +E+E++++ EEEE    +   E+ +   EE E  E 
Sbjct: 207 DMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEM 266

Query: 248 EEEEEEEGEEEEEEEE 263
           E  E    +  + ++ 
Sbjct: 267 EAAEASADDTPDSDDA 282

This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282

>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 22/69 (31%), Positives = 40/69 (57%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
            ++E +E EEE  E E   ++E +E +E+EE +E  E+  E+E E +  +EE+ E+ +E 
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDEL 986

Query: 250 EEEEEGEEE 258
           E +   +  
Sbjct: 987 ESKAAYDSR 995

Length = 1001

>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 22/69 (31%), Positives = 40/69 (57%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253
            ++E +E EEE  E E   ++E +E +E+EE +E  E+  E+E E +  +EE+ E+ +E 
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDEL 986

Query: 254 EGEEEEEEE 262
           E +   +  
Sbjct: 987 ESKAAYDSR 995

Length = 1001

>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 23/72 (31%), Positives = 40/72 (55%)

Query: 180 MMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 239
           M+    E +E EEE  E E   ++E +E +E+EE +E  E+  E+E E +  +EE+ E+ 
Sbjct: 924 MVGSDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDW 983

Query: 240 EEEEEEEEEEEE 251
           +E E +   +  
Sbjct: 984 DELESKAAYDSR 995

Length = 1001

>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 22/69 (31%), Positives = 39/69 (56%)

Query: 200 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEE 259
            ++E +E EEE  E E   ++E +E +E+EE +E  E+  E+E E +  +EE+ E  +E 
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDEL 986

Query: 260 EEEEEEEEE 268
           E +   +  
Sbjct: 987 ESKAAYDSR 995

Length = 1001

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 11/85 (12%), Positives = 17/85 (20%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            E       E                  E    E       ++     +   E+  EE E
Sbjct: 120 PENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPE 179

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEE 270
               E E +     + E        
Sbjct: 180 PPTSEPEPDSPGPPQSETPTSSPPP 204

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 12/87 (13%), Positives = 20/87 (22%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E                  E    E       ++     +   E+  EE E    E E +
Sbjct: 129 ESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPD 188

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
                + E        +   +E  E  
Sbjct: 189 SPGPPQSETPTSSPPPQSPPDEPGEPQ 215

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 11/88 (12%), Positives = 16/88 (18%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            E             EE       E       E                  E    E   
Sbjct: 97  SESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHN 156

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
               ++     +   E+  EE E   + 
Sbjct: 157 PSPNQQPSSFLQPSHEDSPEEPEPPTSE 184

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 11/87 (12%), Positives = 19/87 (21%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
              E                  E    E       ++     +   E+  EE E    E 
Sbjct: 126 SSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEP 185

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E +     + E        +   +E  
Sbjct: 186 EPDSPGPPQSETPTSSPPPQSPPDEPG 212

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 11/87 (12%), Positives = 14/87 (16%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
                        EE       E       E                  E    E     
Sbjct: 99  SVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPS 158

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
             ++         E+  EE E    E 
Sbjct: 159 PNQQPSSFLQPSHEDSPEEPEPPTSEP 185

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 15/84 (17%), Positives = 27/84 (32%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
                +   E+  EE E    E E +     + E        +   +E  E +    ++ 
Sbjct: 163 PSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQA 222

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEE 270
                ++  E E+E  E E E   
Sbjct: 223 PSPNTQQAVEHEDEPTEPEREGPP 246

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 14/100 (14%), Positives = 23/100 (23%)

Query: 171 SGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 230
           SGS + L   +          E                  E    E       ++     
Sbjct: 108 SGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFL 167

Query: 231 EEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEE 270
           +   E+  EE E    E E +     + E        +  
Sbjct: 168 QPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSP 207

Length = 413

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 26/76 (34%), Positives = 46/76 (60%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           E   +++  + +E E++   +     E E+   E ++EEEE+EEEEEEE+E+E   +E  
Sbjct: 354 ETLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHS 413

Query: 247 EEEEEEEEGEEEEEEE 262
           ++EE EE+  E + E+
Sbjct: 414 DDEEFEEDDVESKYED 429

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 23/84 (27%), Positives = 39/84 (46%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
             EE  E E  +EE  EE  E  +E  E E   +EE+  ++    E  + E   +  E+ 
Sbjct: 387 PVEELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKG 446

Query: 248 EEEEEEEGEEEEEEEEEEEEEEEE 271
            +  E+  E+  +E  + E +EE+
Sbjct: 447 IKTLEDLAEQAVDELIDIEGDEEK 470

Length = 470

>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 24/87 (27%), Positives = 36/87 (41%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EEEE  +EE + E EEE + E EE    E EEE + E       EE  E     E     
Sbjct: 39  EEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARP 98

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            E+E            + ++  ++++ 
Sbjct: 99  AEDEAARPAEAAARRPKAKKAAKKKKG 125

Length = 746

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 32/88 (36%), Positives = 63/88 (71%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            K  EE ++ EE++++ EE ++ EE+E++  E  ++E EE ++ EE +++E EE+++ EE 
Sbjct: 1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            ++ EEE + + EE ++E EE++++ EEA
Sbjct: 1722 KKAEEENKIKAEEAKKEAEEDKKKAEEA 1749

Length = 2084

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 27/77 (35%), Positives = 57/77 (74%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
             EEEE+ +E+    E++ +E E E+ +EE+E++EEEEEEEEEE+E+ ++++++++++  
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDDDDYN 201

Query: 248 EEEEEEEGEEEEEEEEE 264
            E   + GE+++ +++E
Sbjct: 202 AENYFDNGEDDDYDDDE 218

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 27/78 (34%), Positives = 57/78 (73%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254
             EEEE+ +E+    E++ +E E E+ +EE+E++EEEEEEEEEE+E+ ++++++++++  
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDDDDYN 201

Query: 255 GEEEEEEEEEEEEEEEEA 272
            E   +  E+++ +++EA
Sbjct: 202 AENYFDNGEDDDYDDDEA 219

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 24/82 (29%), Positives = 54/82 (65%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
           ++E+E+++ ++  +EEE+EE+EEE+ +   + + ++  + + EE+E+ + E+EE+   E 
Sbjct: 25  DDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84

Query: 251 EEEEGEEEEEEEEEEEEEEEEA 272
           EE+  E+E  E+    + +EE+
Sbjct: 85  EEDTPEDELAEKLRLRKLQEES 106

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 48.1 bits (114), Expect = 3e-06
 Identities = 32/94 (34%), Positives = 41/94 (43%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           + +  E E   E   EE E   E E E  EE   E E+E E E + E E E E   E + 
Sbjct: 632 KGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKG 691

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEEALWGYADMG 280
           E+E E E   +E + + E E EE E        G
Sbjct: 692 EQEGEGEIEAKEADHKGETEAEEVEHEGETEAEG 725

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 22/65 (33%), Positives = 33/65 (50%)

Query: 210 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEE 269
            E ++E E+ +  E   + EEEE  + E EE  E E+ E  EE+    E     E+E E+
Sbjct: 374 AEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFED 433

Query: 270 EEALW 274
           E+ L 
Sbjct: 434 EDELE 438

Length = 449

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 18/72 (25%), Positives = 41/72 (56%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
               + EE+++++EE +EE+EE  + E++E++++++++++    E   E      E EE+
Sbjct: 118 DAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEK 177

Query: 245 EEEEEEEEEEGE 256
             E E    +G 
Sbjct: 178 RAELEFYYYQGT 189

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 19/84 (22%), Positives = 44/84 (52%)

Query: 186  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            ++E+  EE    +E+ ++++  +  E++E+  E+  EE  +E EE  E+  + +EE E+ 
Sbjct: 4032 QDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQG 4091

Query: 246  EEEEEEEEEGEEEEEEEEEEEEEE 269
            E  E++  +   + + +      E
Sbjct: 4092 EVPEDQAIDNHPKMDAKSTFASAE 4115

Length = 4600

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 23/87 (26%), Positives = 46/87 (52%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
             E E  + EEE ++ +EE  +  E+      E+  +E  EE+  E E++  E+     E 
Sbjct: 3874 SENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNES 3933

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            +   +E++ +  E+++ +E+E+EEE  
Sbjct: 3934 DLVSKEDDNKALEDKDRQEKEDEEEMS 3960

Length = 4600

>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 25/85 (29%), Positives = 46/85 (54%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
           E +   ++  E EEE+E++ EE +++E+E E  E+ E E E + E+ EE+E+E++ E  E
Sbjct: 636 ENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANE 695

Query: 251 EEEEGEEEEEEEEEEEEEEEEALWG 275
                ++       +     +AL G
Sbjct: 696 GVVPIDKAVRRALPKVLNLPDALDG 720

This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localised exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units. Length = 784

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 15/87 (17%), Positives = 43/87 (49%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E ++++  E+E  ++ E+E    +E++++ EE  ++   ++++ EE   +     + + E
Sbjct: 91  ELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAE 150

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            E +      ++   E +++ E E   
Sbjct: 151 AEAKRAAAAAKKAAAEAKKKAEAEAAK 177

Length = 387

>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 20/76 (26%), Positives = 41/76 (53%)

Query: 197 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGE 256
           +  EE  +E E  + E+ E+E++ +E+E++++ EEEE    +   E+ +   EE E    
Sbjct: 207 DMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEM 266

Query: 257 EEEEEEEEEEEEEEEA 272
           E  E   ++  + ++A
Sbjct: 267 EAAEASADDTPDSDDA 282

This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282

>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

 Score = 48.1 bits (114), Expect = 3e-06
 Identities = 22/69 (31%), Positives = 40/69 (57%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
            ++E +E EEE  E E   ++E +E +E+EE +E  E+  E+E E +  +EE+ E+ +E 
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDEL 986

Query: 252 EEEGEEEEE 260
           E +   +  
Sbjct: 987 ESKAAYDSR 995

Length = 1001

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 47.7 bits (113), Expect = 3e-06
 Identities = 11/88 (12%), Positives = 19/88 (21%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +       E                  E    E       ++     +   E+  EE E 
Sbjct: 121 ENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEP 180

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
              E E +  G  + E        +   
Sbjct: 181 PTSEPEPDSPGPPQSETPTSSPPPQSPP 208

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 47.7 bits (113), Expect = 3e-06
 Identities = 11/86 (12%), Positives = 20/86 (23%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
                           E    E       ++     +   E+  EE E    E E +   
Sbjct: 132 ASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPG 191

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
             + E        +   +E  E +  
Sbjct: 192 PPQSETPTSSPPPQSPPDEPGEPQSP 217

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 47.7 bits (113), Expect = 3e-06
 Identities = 15/86 (17%), Positives = 29/86 (33%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           ++     +   E+  EE E    E E +     + E        +   +E  E +    +
Sbjct: 161 QQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQ 220

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
           +      ++  E E+E  E E E   
Sbjct: 221 QAPSPNTQQAVEHEDEPTEPEREGPP 246

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 47.7 bits (113), Expect = 3e-06
 Identities = 11/87 (12%), Positives = 15/87 (17%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            E             EE       E       E                  E    E   
Sbjct: 97  SESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHN 156

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
               ++     +   E+  EE E    
Sbjct: 157 PSPNQQPSSFLQPSHEDSPEEPEPPTS 183

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 47.3 bits (112), Expect = 3e-06
 Identities = 11/87 (12%), Positives = 17/87 (19%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
                    EE       E       E                  E    E       ++
Sbjct: 103 PTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQ 162

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
                +    +  EE E    E E ++
Sbjct: 163 PSSFLQPSHEDSPEEPEPPTSEPEPDS 189

Length = 413

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 26/76 (34%), Positives = 46/76 (60%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           E   +++  + +E E++   +     E E+   E ++EEEE+EEEEEEE+E+E   +E  
Sbjct: 354 ETLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHS 413

Query: 248 EEEEEEEGEEEEEEEE 263
           ++EE EE + E + E+
Sbjct: 414 DDEEFEEDDVESKYED 429

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 25/87 (28%), Positives = 51/87 (58%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           EEE+   +  EEE+EEE E        + +++E   E+E+E+EE++EE E   + E  + 
Sbjct: 1   EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKR 60

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E+   +E  +++++E ++  E++  A+
Sbjct: 61  EKARLKELKKQKKQEIQKILEQQNAAI 87

Length = 1033

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 32/87 (36%), Positives = 64/87 (73%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            K EE++++ EE ++ EE+E++  E  ++E EE ++ EE +++E EE+++ EE ++ EEE 
Sbjct: 1669 KAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEEN 1728

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            + + EE ++E EE++++ EE +++EEE
Sbjct: 1729 KIKAEEAKKEAEEDKKKAEEAKKDEEE 1755

Length = 2084

>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 34/92 (36%), Positives = 53/92 (57%)

Query: 181 MPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240
           M F +  E  ++EE + E EE   E E EEE +EEE EE  ++     +   E  E+E E
Sbjct: 376 MKFMQRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAE 435

Query: 241 EEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            ++ ++E + E +E +E +EEEE E+EEE + 
Sbjct: 436 SKKLKKENKNEFKEKKESDEEEELEDEEEAKV 467

This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome. Length = 728

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 21/89 (23%), Positives = 28/89 (31%)

Query: 191  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
             E +    +E  E  E   E ++E  + EE  E  E    E E   +       E   E 
Sbjct: 932  TESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEV 991

Query: 251  EEEEGEEEEEEEEEEEEEEEEALWGYADM 279
            E     E E    +  E   E     A M
Sbjct: 992  ETVTAVEPEVAPAQVPEATVEHNHATAPM 1020

Length = 1068

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 39/89 (43%), Positives = 46/89 (51%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +E  EE E E EE EE  EE +E+ E  +EE EE E   EE E+   E EE +EE EE+ 
Sbjct: 308 RERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKL 367

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
               EE EE  E   EE  E E E  E  
Sbjct: 368 SALLEELEELFEALREELAELEAELAEIR 396

Length = 1163

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 32/85 (37%), Positives = 44/85 (51%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +EEE+E EEEE E+EEEEEE E +   EEE E   E + + EE EE+ E    E      
Sbjct: 456 EEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISR 515

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEE 269
             E ++      + E  +EE  + E
Sbjct: 516 MSEGQQPRGSSVQPESPQEEPLQPE 540

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 11/88 (12%), Positives = 65/88 (73%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K ++E +  ++ E++   +++++    ++ +   + +++++++++++ ++++ ++++++E
Sbjct: 95  KLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDE 154

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           +++E++++++ ++E+EE++E +E E+ +
Sbjct: 155 DDDEDDDDDDVDDEDEEKKEAKELEKLS 182

Length = 509

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 47.7 bits (113), Expect = 4e-06
 Identities = 23/63 (36%), Positives = 45/63 (71%)

Query: 180 MMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 239
           M P      ++++E+E+E++++EE++EEEEEEEEE +  ++E+EE+E  E+   E+ E +
Sbjct: 145 MSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVD 204

Query: 240 EEE 242
           + +
Sbjct: 205 KTD 207

Length = 2849

>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

 Score = 47.7 bits (113), Expect = 4e-06
 Identities = 22/69 (31%), Positives = 39/69 (56%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
            ++E +E EEE  E E   ++E +E +E+EE +E  E+  E+E E +  +EE+ E+ +E 
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDEL 986

Query: 249 EEEEEEGEE 257
           E +      
Sbjct: 987 ESKAAYDSR 995

Length = 1001

>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

 Score = 47.7 bits (113), Expect = 4e-06
 Identities = 22/69 (31%), Positives = 40/69 (57%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
            ++E +E EEE  E E   ++E +E +E+EE +E  E+  E+E E +  +EE+ E+ +E 
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDEL 986

Query: 248 EEEEEEEGE 256
           E +   +  
Sbjct: 987 ESKAAYDSR 995

Length = 1001

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 47.3 bits (112), Expect = 4e-06
 Identities = 11/87 (12%), Positives = 16/87 (18%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
             E       E                  E    E       ++     +   E+  EE 
Sbjct: 119 SPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEP 178

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E    E E       + E         
Sbjct: 179 EPPTSEPEPDSPGPPQSETPTSSPPPQ 205

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 47.3 bits (112), Expect = 4e-06
 Identities = 13/86 (15%), Positives = 27/86 (31%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E       ++     +   E+  EE E    E E +     + E        +   +E  
Sbjct: 153 ESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPG 212

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
           E +    ++      ++  E E+E  
Sbjct: 213 EPQSPTPQQAPSPNTQQAVEHEDEPT 238

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 47.3 bits (112), Expect = 4e-06
 Identities = 14/88 (15%), Positives = 18/88 (20%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           + E + E  EE    E+EE  +        E             EE       E      
Sbjct: 68  QTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSS 127

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            E                  E    E  
Sbjct: 128 PESPASHSPPPSPPSHPGPHEPAPPESH 155

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 47.3 bits (112), Expect = 4e-06
 Identities = 12/87 (13%), Positives = 22/87 (25%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
                       E    E       ++     +   E+  EE E    E E +     + 
Sbjct: 136 PPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQS 195

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E            +E  E +    ++A
Sbjct: 196 ETPTSSPPPQSPPDEPGEPQSPTPQQA 222

Length = 413

>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 22/86 (25%), Positives = 38/86 (44%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
               EE  E E  +EE  EE  E  +E  E E   +EE+  ++    E  + E   +  E
Sbjct: 385 YVPVEELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAE 444

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEE 270
           +  +  E+   +  +E  + E +EE+
Sbjct: 445 KGIKTLEDLAEQAVDELIDIEGDEEK 470

Length = 470

>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 23/90 (25%), Positives = 51/90 (56%)

Query: 182 PFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
               E +E+++EE+E + +  EE+    + ++ +   + +  +++ ++++ E+E      
Sbjct: 90  DASNEGDEDDDEEDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDETAALLR 149

Query: 242 EEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           E E+ ++E  EE+  EEEE+  EEE+  EE
Sbjct: 150 ELEKIKKERAEEKEREEEEKAAEEEKAREE 179

This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing. Length = 241

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 23/58 (39%), Positives = 45/58 (77%)

Query: 182 PFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 239
             + EEEE+ +E+    E++ +E E E+ +EE+E++EEEEEEEEEE+E+ ++++++++
Sbjct: 140 GLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 24/81 (29%), Positives = 53/81 (65%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           ++E+E+++ ++  +EEE+EE+EEE+ +   + + ++  + + EE+E+ + E+EE+   E 
Sbjct: 25  DDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84

Query: 246 EEEEEEEEEGEEEEEEEEEEE 266
           EE+  E+E  E+    + +EE
Sbjct: 85  EEDTPEDELAEKLRLRKLQEE 105

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 47.3 bits (112), Expect = 5e-06
 Identities = 23/106 (21%), Positives = 50/106 (47%), Gaps = 21/106 (19%)

Query: 186  EEEEEEEEEEEEEEEEEE---------------------EEEEEEEEEEEEEEEEEEEEE 224
             E E  + EEE ++ +EE                     EE+  E E++  E+     E 
Sbjct: 3874 SENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNES 3933

Query: 225  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEE 270
            +   +E++ +  E+++ +E+E+EEE  ++ G ++E + + +E   +
Sbjct: 3934 DLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQ 3979

Length = 4600

>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit

 Score = 47.2 bits (112), Expect = 5e-06
 Identities = 21/70 (30%), Positives = 41/70 (58%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           +EE+ ++++  E E+EE+ E E E +E    +E E  + E E  EEE  + ++++  +E 
Sbjct: 211 DEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDES 270

Query: 246 EEEEEEEEEG 255
           +++ E   EG
Sbjct: 271 DDDSETPGEG 280

This model describes Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit that functions in cobalamin biosynthesis. Cobalamin (vitamin B12) can be synthesized via several pathways, including an aerobic pathway (found in Pseudomonas denitrificans) and an anaerobic pathway (found in P. shermanii and Salmonella typhimurium). These pathways differ in the point of cobalt insertion during corrin ring formation. There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction. Confusion regarding the functions of enzymes found in the aerobic vs. anaerobic pathways has arisen because nonhomologous genes in these different pathways were given the same gene symbols. Thus, cobT in the aerobic pathway (P. denitrificans) is not a homolog of cobT in the anaerobic pathway (S. typhimurium). It should be noted that E. coli synthesizes cobalamin only when it is supplied with the precursor cobinamide, which is a complex intermediate. Additionally, all E. coli cobalamin synthesis genes (cobU, cobS and cobT) were named after their Salmonella typhimurium homologs which function in the anaerobic cobalamin synthesis pathway. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 600

>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 27/88 (30%), Positives = 42/88 (47%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KE  +  E+E+  E EEE+ E +  +EE ++ + E +  EE  +E E +     E    E
Sbjct: 13  KELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGE 72

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           EEEEE + E  E        ++   EE 
Sbjct: 73  EEEEEAKAEAAEFRAYLRGGDDALAEER 100

This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease [Mobile and extrachromosomal element functions, Prophage functions]. Length = 384

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 47.7 bits (113), Expect = 5e-06
 Identities = 22/67 (32%), Positives = 46/67 (68%)

Query: 197 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGE 256
            EE+    +    ++++E+E+E++++EE++EEEEEEEEE +  ++E+EE+E  E+    +
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEK 200

Query: 257 EEEEEEE 263
            E ++ +
Sbjct: 201 SEVDKTD 207

Length = 2849

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 47.3 bits (112), Expect = 5e-06
 Identities = 22/66 (33%), Positives = 47/66 (71%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +E+    +    ++++E+E+E++++EE++EEEEEEEEE +  ++E+EE+E  E+   E+ 
Sbjct: 142 EEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKS 201

Query: 245 EEEEEE 250
           E ++ +
Sbjct: 202 EVDKTD 207

Length = 2849

>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

 Score = 47.3 bits (112), Expect = 5e-06
 Identities = 22/69 (31%), Positives = 39/69 (56%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
            ++E +E EEE  E E   ++E +E +E+EE +E  E+  E+E E +  +EE+ E+ +E 
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDEL 986

Query: 253 EEGEEEEEE 261
           E     +  
Sbjct: 987 ESKAAYDSR 995

Length = 1001

>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

 Score = 47.3 bits (112), Expect = 5e-06
 Identities = 22/69 (31%), Positives = 39/69 (56%)

Query: 198 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEE 257
            ++E +E EEE  E E   ++E +E +E+EE +E  E+  E+E E +  +EE+ E+  E 
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDEL 986

Query: 258 EEEEEEEEE 266
           E +   +  
Sbjct: 987 ESKAAYDSR 995

Length = 1001

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 46.9 bits (111), Expect = 5e-06
 Identities = 11/87 (12%), Positives = 20/87 (22%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
                          E    E       ++     +   E+  EE E    E E +    
Sbjct: 133 SHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGP 192

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            + E        +   +E  E +    
Sbjct: 193 PQSETPTSSPPPQSPPDEPGEPQSPTP 219

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 46.9 bits (111), Expect = 5e-06
 Identities = 10/85 (11%), Positives = 13/85 (15%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
                E             EE       E       E                  E    
Sbjct: 93  SGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPP 152

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEE 270
           E       +      +   E+  EE
Sbjct: 153 ESHNPSPNQQPSSFLQPSHEDSPEE 177

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 46.9 bits (111), Expect = 5e-06
 Identities = 11/87 (12%), Positives = 22/87 (25%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
                    E    E       ++     +   E+  EE E    E E +     + E  
Sbjct: 139 SPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETP 198

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
                 +   +E  E +    ++    
Sbjct: 199 TSSPPPQSPPDEPGEPQSPTPQQAPSP 225

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 46.9 bits (111), Expect = 5e-06
 Identities = 11/87 (12%), Positives = 15/87 (17%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
              E             EE       E       E                  E    E 
Sbjct: 95  SGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPES 154

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
                 ++     +   E+  EE E  
Sbjct: 155 HNPSPNQQPSSFLQPSHEDSPEEPEPP 181

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 46.9 bits (111), Expect = 5e-06
 Identities = 11/86 (12%), Positives = 17/86 (19%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
                  E       E                  E    E       ++     +   E+
Sbjct: 114 LASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHED 173

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
             EE E    E E +     + E   
Sbjct: 174 SPEEPEPPTSEPEPDSPGPPQSETPT 199

Length = 413

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 25/76 (32%), Positives = 46/76 (60%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
           E   +++  + +E E++   +     E E+   E ++EEEE+EEEEEEE+E+E   +E  
Sbjct: 354 ETLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHS 413

Query: 249 EEEEEEGEEEEEEEEE 264
           ++EE E ++ E + E+
Sbjct: 414 DDEEFEEDDVESKYED 429

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 23/56 (41%), Positives = 44/56 (78%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240
             EEEE+ +E+    E++ +E E E+ +EE+E++EEEEEEEEEE+E+ ++++++++
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 24/81 (29%), Positives = 53/81 (65%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           ++E+E+++ ++  +EEE+EE+EEE+ +   + + ++  + + EE+E+ + E+EE+   E 
Sbjct: 25  DDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84

Query: 247 EEEEEEEEGEEEEEEEEEEEE 267
           EE+  E+E  E+    + +EE
Sbjct: 85  EEDTPEDELAEKLRLRKLQEE 105

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 31/90 (34%), Positives = 42/90 (46%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E+E EEEE E+EEEEEE E +   EEE E   E + + EE EE+ E    E        E
Sbjct: 459 EQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSE 518

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEALWG 275
            ++        E  +EE  + E  +    G
Sbjct: 519 GQQPRGSSVQPESPQEEPLQPESMDAESVG 548

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 47.3 bits (112), Expect = 6e-06
 Identities = 21/88 (23%), Positives = 46/88 (52%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            K+E  ++E+  EE    +E+ ++++  +  E++E+  E+  EE  +E EE  E+  + +E
Sbjct: 4027 KDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDE 4086

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            E E+ E  E+   +   + + +     A
Sbjct: 4087 ELEQGEVPEDQAIDNHPKMDAKSTFASA 4114

Length = 4600

>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 27/88 (30%), Positives = 43/88 (48%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            +  E+E+  E EEE+ E +  +EE ++ + E +  EE  +E E +     E    EEEE
Sbjct: 16  RKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGEEEE 75

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           EE + E  E        ++   EE +AL
Sbjct: 76  EEAKAEAAEFRAYLRGGDDALAEERKAL 103

This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease [Mobile and extrachromosomal element functions, Prophage functions]. Length = 384

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 45.9 bits (109), Expect = 6e-06
 Identities = 30/72 (41%), Positives = 46/72 (63%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +E  E EE +EEE+E    E++E++ + E+E+EE EEE EEE+EE  +E E+E EE+ E 
Sbjct: 57  QETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTES 116

Query: 245 EEEEEEEEEEGE 256
             E+E      +
Sbjct: 117 NVEKEITNPSWK 128

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

 Score = 47.3 bits (112), Expect = 6e-06
 Identities = 22/69 (31%), Positives = 40/69 (57%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEG 255
            ++E +E EEE  E E   ++E +E +E+EE +E  E+  E+E E +  +EE+ E+ +E 
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDEL 986

Query: 256 EEEEEEEEE 264
           E +   +  
Sbjct: 987 ESKAAYDSR 995

Length = 1001

>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

 Score = 46.9 bits (111), Expect = 6e-06
 Identities = 21/69 (30%), Positives = 39/69 (56%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254
            ++E +E EEE  E E   ++E +E +E+EE +E  E+  E+E E +  +EE+ E+ +E 
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDEL 986

Query: 255 GEEEEEEEE 263
             +   +  
Sbjct: 987 ESKAAYDSR 995

Length = 1001

>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

 Score = 46.9 bits (111), Expect = 6e-06
 Identities = 21/69 (30%), Positives = 39/69 (56%)

Query: 197 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGE 256
            ++E +E EEE  E E   ++E +E +E+EE +E  E+  E+E E +  +EE+ E+ +  
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDEL 986

Query: 257 EEEEEEEEE 265
           E +   +  
Sbjct: 987 ESKAAYDSR 995

Length = 1001

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 46.9 bits (111), Expect = 6e-06
 Identities = 14/93 (15%), Positives = 16/93 (17%)

Query: 178 THMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 237
            H       E  EE    E+EE  +        E             EE       E   
Sbjct: 65  GHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTS 124

Query: 238 EEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEE 270
               E                  E    E    
Sbjct: 125 GSSPESPASHSPPPSPPSHPGPHEPAPPESHNP 157

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 46.5 bits (110), Expect = 6e-06
 Identities = 13/87 (14%), Positives = 26/87 (29%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            E       ++     +   E+  EE E    E E +     + E        +   +E 
Sbjct: 152 PESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEP 211

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            E +    +       ++  E E+E  
Sbjct: 212 GEPQSPTPQQAPSPNTQQAVEHEDEPT 238

Length = 413

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 47.1 bits (112), Expect = 6e-06
 Identities = 25/76 (32%), Positives = 46/76 (60%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
           E   +++  + +E E++   +     E E+   E ++EEEE+EEEEEEE+E+E   +E  
Sbjct: 354 ETLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHS 413

Query: 250 EEEEEGEEEEEEEEEE 265
           ++EE  E++ E + E+
Sbjct: 414 DDEEFEEDDVESKYED 429

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional

 Score = 47.1 bits (112), Expect = 6e-06
 Identities = 24/83 (28%), Positives = 49/83 (59%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EEE+   +  EEE+EEE E        + +++E   E+E+E+EE++EE E   + E  + 
Sbjct: 1   EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKR 60

Query: 246 EEEEEEEEEGEEEEEEEEEEEEE 268
           E+   +E + ++++E ++  E++
Sbjct: 61  EKARLKELKKQKKQEIQKILEQQ 83

Length = 1033

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 47.1 bits (111), Expect = 6e-06
 Identities = 31/87 (35%), Positives = 61/87 (70%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            K+E EE+++ EE ++ EEE + +  EE ++ EE++++ EE ++ EE+E++  E  ++E E
Sbjct: 1640 KKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAE 1699

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            E ++ EE ++ E EE+++ EE ++ EE
Sbjct: 1700 EAKKAEELKKKEAEEKKKAEELKKAEE 1726

Length = 2084

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 45.9 bits (109), Expect = 6e-06
 Identities = 23/56 (41%), Positives = 44/56 (78%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
             EEEE+ +E+    E++ +E E E+ +EE+E++EEEEEEEEEE+E+ ++++++++
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 45.9 bits (109), Expect = 6e-06
 Identities = 23/56 (41%), Positives = 44/56 (78%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
             EEEE+ +E+    E++ +E E E+ +EE+E++EEEEEEEEEE+E+ ++++++++
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 32/83 (38%), Positives = 50/83 (60%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
             E    +E+E+E+E +   E  + EEE EE+E+E+ +  ++  E+E+E+EE E   E  
Sbjct: 259 SAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESP 318

Query: 245 EEEEEEEEEEGEEEEEEEEEEEE 267
            EEEE EE E     ++EEE+EE
Sbjct: 319 VEEEESEEPEPPPLPKKEEEKEE 341

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 46.9 bits (111), Expect = 7e-06
 Identities = 21/93 (22%), Positives = 48/93 (51%)

Query: 186  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            EE    +E+ ++++  +  E++E+  E+  EE  +E EE  E+  + +EE E+ E  E++
Sbjct: 4038 EENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQ 4097

Query: 246  EEEEEEEEEGEEEEEEEEEEEEEEEEALWGYAD 278
              +   + + +      E +EE  ++ + G  +
Sbjct: 4098 AIDNHPKMDAKSTFASAEADEENTDKGIVGENE 4130

Length = 4600

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 11/88 (12%), Positives = 64/88 (72%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K+ ++E +  ++ E++   +++++    ++ +   + +++++++++++ ++++ ++++++
Sbjct: 94  KKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDD 153

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E+++E+++++  ++E+EE++E +E E+ 
Sbjct: 154 EDDDEDDDDDDVDDEDEEKKEAKELEKL 181

Length = 509

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 47.1 bits (111), Expect = 7e-06
 Identities = 31/87 (35%), Positives = 61/87 (70%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            KE EE+++ EE ++ EEE + +  EE ++ EE++++ EE ++ EE+E++  E  ++E EE
Sbjct: 1641 KEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE 1700

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
             ++ EE +++  EE+++ EE ++ EEE
Sbjct: 1701 AKKAEELKKKEAEEKKKAEELKKAEEE 1727

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 47.1 bits (111), Expect = 7e-06
 Identities = 30/88 (34%), Positives = 61/88 (69%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            K EE + + EE ++ EEE+++ E+ +++E EE+++ EE ++ EEE + +  EE ++ EE+
Sbjct: 1614 KAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED 1673

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            +++ EE ++  E+E++  E  ++E EEA
Sbjct: 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEA 1701

Length = 2084

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 227 EEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEE 260
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 219
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 220
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 221
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 222
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 223
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 224
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 225
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 226
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 227
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 228
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 229
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 197 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 230
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 198 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 231
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 199 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 232
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 200 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 233
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 201 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 234
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 202 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 235
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 203 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 236
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 204 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 237
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 205 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 238
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 206 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 239
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 207 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 208 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 209 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 210 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 211 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 212 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 213 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 214 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 215 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 216 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 217 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 218 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 219 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 220 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 221 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 225 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEE 258
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed

 Score = 46.4 bits (111), Expect = 7e-06
 Identities = 20/66 (30%), Positives = 39/66 (59%)

Query: 172 GSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 231
           G  ++   +M F +E   EE EE E  E+ E   ++   E+ EE EEE++++ +++ +E+
Sbjct: 320 GVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDED 379

Query: 232 EEEEEE 237
           ++E  E
Sbjct: 380 DDEGVE 385

Length = 390

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 46.9 bits (111), Expect = 8e-06
 Identities = 22/90 (24%), Positives = 46/90 (51%)

Query: 182  PFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
            P   E+  EE    +E+ ++++  +  E++E+  E+  EE  +E EE  E+  + +EE E
Sbjct: 4030 PMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELE 4089

Query: 242  EEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            + E  E++  +   + + +      E +EE
Sbjct: 4090 QGEVPEDQAIDNHPKMDAKSTFASAEADEE 4119

Length = 4600

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 46.3 bits (110), Expect = 8e-06
 Identities = 15/88 (17%), Positives = 45/88 (51%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           ++++  E+E  ++ E+E    +E++++ EE  ++   ++++ EE   +     + + E E
Sbjct: 93  QQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAE 152

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            +      ++   E +++ E E  ++ A
Sbjct: 153 AKRAAAAAKKAAAEAKKKAEAEAAKKAA 180

Length = 387

>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated

 Score = 46.4 bits (111), Expect = 8e-06
 Identities = 22/88 (25%), Positives = 36/88 (40%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KEE + E EEE + E EE    E EEE + E       EE  E     E      E+E  
Sbjct: 45  KEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAA 104

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
              E        ++  ++++  + +++ 
Sbjct: 105 RPAEAAARRPKAKKAAKKKKGPKPKKKK 132

Length = 746

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 46.7 bits (110), Expect = 8e-06
 Identities = 32/88 (36%), Positives = 61/88 (69%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            K EE ++ EEE + +  EE ++ EE++++ EE ++ EE+E++  E  ++E EE ++ EE 
Sbjct: 1648 KAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEEL 1707

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            +++E EE+++ EE ++ EEE + + EEA
Sbjct: 1708 KKKEAEEKKKAEELKKAEEENKIKAEEA 1735

Length = 2084

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 24/81 (29%), Positives = 52/81 (64%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
           ++E+E+++ ++  +EEE+EE+EEE+ +   + + ++  + + EE+E+ + E+EE+   E 
Sbjct: 25  DDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84

Query: 249 EEEEEEGEEEEEEEEEEEEEE 269
           EE+  E E  E+    + +EE
Sbjct: 85  EEDTPEDELAEKLRLRKLQEE 105

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 46.3 bits (110), Expect = 8e-06
 Identities = 29/67 (43%), Positives = 49/67 (73%)

Query: 208 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEE 267
           E+E E+E  +EEEEEE+EE++EEEE+  ++EEE +EEEE+EE++++  + +E   E E  
Sbjct: 28  EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELL 87

Query: 268 EEEEALW 274
            + + +W
Sbjct: 88  NKTKPIW 94

Length = 529

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 46.1 bits (109), Expect = 9e-06
 Identities = 10/87 (11%), Positives = 13/87 (14%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
                 E             EE       E       E                  E   
Sbjct: 92  PSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAP 151

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            E        +     +   E+  EE 
Sbjct: 152 PESHNPSPNQQPSSFLQPSHEDSPEEP 178

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 46.1 bits (109), Expect = 9e-06
 Identities = 14/87 (16%), Positives = 19/87 (21%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           +   + E + E  EE    E+EE  +        E             EE       E  
Sbjct: 64  QGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENT 123

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
                E                  E A
Sbjct: 124 SGSSPESPASHSPPPSPPSHPGPHEPA 150

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 46.1 bits (109), Expect = 9e-06
 Identities = 10/86 (11%), Positives = 17/86 (19%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
                E       E                  E    E       ++     +   E+  
Sbjct: 116 SGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSP 175

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEEA 272
           EE E      E +     + E    +
Sbjct: 176 EEPEPPTSEPEPDSPGPPQSETPTSS 201

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 46.1 bits (109), Expect = 9e-06
 Identities = 13/85 (15%), Positives = 18/85 (21%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           E+   + E + E  EE    E+EE  +        E             EE       E 
Sbjct: 63  EQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPEN 122

Query: 248 EEEEEEEGEEEEEEEEEEEEEEEEA 272
                 E                  
Sbjct: 123 TSGSSPESPASHSPPPSPPSHPGPH 147

Length = 413

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 223 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEE 262
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 26/110 (23%), Positives = 54/110 (49%), Gaps = 9/110 (8%)

Query: 169  DNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---------EEEE 219
            D S + ++ + M    K+    E E  + EEE ++ +EE  +  E+          +E  
Sbjct: 3853 DESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPN 3912

Query: 220  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEE 269
            EE+  E E++  E+     E +   +E++ +  E+ + +E+E+EEE  ++
Sbjct: 3913 EEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDD 3962

Length = 4600

>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
             K  E+E+  E EEE+ E +  +EE ++ + E +  EE  +E E +     E    EEE
Sbjct: 15  LRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGEEE 74

Query: 243 EEEEEEEEEEEE-----GEEEEEEE 262
           EEE + E  E       G++   EE
Sbjct: 75  EEEAKAEAAEFRAYLRGGDDALAEE 99

This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease [Mobile and extrachromosomal element functions, Prophage functions]. Length = 384

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 30/77 (38%), Positives = 47/77 (61%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           + EE +EEE+E    E++E++ + E+E+EE EEE EEE+EE  +E E+E EE+ E   E+
Sbjct: 61  EIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEK 120

Query: 245 EEEEEEEEEEGEEEEEE 261
           E      +  G E+   
Sbjct: 121 EITNPSWKPVGTEQTGP 137

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 14/88 (15%), Positives = 20/88 (22%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
           +++ E + E  EE    E+EE  +        E             EE       E    
Sbjct: 66  HRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSG 125

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
              E                  E    E
Sbjct: 126 SSPESPASHSPPPSPPSHPGPHEPAPPE 153

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 14/86 (16%), Positives = 26/86 (30%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
                +   E+  EE E    E E +     + E        +   +E  E +    ++ 
Sbjct: 163 PSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQA 222

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
                ++    E+E  E E E     
Sbjct: 223 PSPNTQQAVEHEDEPTEPEREGPPFP 248

Length = 413

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 24/54 (44%), Positives = 37/54 (68%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 236
           F   E E+   E ++EEEE+EEEEEEE+E+E   +E  ++EE EE++ E + E+
Sbjct: 376 FSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYED 429

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 25/76 (32%), Positives = 44/76 (57%)

Query: 203 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEE 262
           E   +++  + +E E++   +     E E+   E ++EEEE+EEEEEEE+E+    +E  
Sbjct: 354 ETLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHS 413

Query: 263 EEEEEEEEEALWGYAD 278
           ++EE EE++    Y D
Sbjct: 414 DDEEFEEDDVESKYED 429

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 25/94 (26%), Positives = 39/94 (41%)

Query: 175 DVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 234
           +V +H     +EE  +EE + E EEE + E EE    E EEE + E       EE  E  
Sbjct: 30  EVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAA 89

Query: 235 EEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEE 268
              E      E+E     E      + ++  +++
Sbjct: 90  AAAEAAARPAEDEAARPAEAAARRPKAKKAAKKK 123

Length = 746

>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 22/87 (25%), Positives = 50/87 (57%)

Query: 182 PFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
              ++++EE+E + +  EE+    + ++ +   + +  +++ ++++ E+E      E E+
Sbjct: 94  EGDEDDDEEDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDETAALLRELEK 153

Query: 242 EEEEEEEEEEEEEGEEEEEEEEEEEEE 268
            ++E  EE+E EE E+  EEE+  EEE
Sbjct: 154 IKKERAEEKEREEEEKAAEEEKAREEE 180

This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing. Length = 241

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 46.7 bits (110), Expect = 1e-05
 Identities = 30/87 (34%), Positives = 63/87 (72%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            K+ EE++++ EE ++ EE+E++  E  ++E EE ++ EE +++E EE+++ EE ++ EEE
Sbjct: 1668 KKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEE 1727

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
             + + EE ++  EE++++ EE +++EE
Sbjct: 1728 NKIKAEEAKKEAEEDKKKAEEAKKDEE 1754

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 29/87 (33%), Positives = 62/87 (71%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
             ++ EE++++ EE ++ EE+E++  E  ++E EE ++ EE +++E EE+++ EE ++ EE
Sbjct: 1667 AKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEE 1726

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            E + + EE + E EE++++ EE +++E
Sbjct: 1727 ENKIKAEEAKKEAEEDKKKAEEAKKDE 1753

Length = 2084

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 23/81 (28%), Positives = 52/81 (64%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           ++E+E+++ ++  +EEE+EE+EEE+ +   + + ++  + + EE+E+ + E+EE+   E 
Sbjct: 25  DDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84

Query: 248 EEEEEEEGEEEEEEEEEEEEE 268
           EE+  E+   E+    + +EE
Sbjct: 85  EEDTPEDELAEKLRLRKLQEE 105

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 38/89 (42%), Positives = 44/89 (49%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            E E EE EE  EE +E+ E  +EE EE E   EE E+   E EE +EE EE+     EE
Sbjct: 314 LENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEE 373

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            EE  E   E   E E E  E   E E L
Sbjct: 374 LEELFEALREELAELEAELAEIRNELEEL 402

Length = 1163

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 23/34 (67%), Positives = 23/34 (67%)

Query: 224 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEE 257
               E EEEEEEEEE  EEEEEEEEEEE    EE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 23/34 (67%), Positives = 23/34 (67%)

Query: 229 EEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEE 262
               E EEEEEEEEE  EEEEEEEEE E   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 24/34 (70%), Positives = 24/34 (70%)

Query: 226 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEE 259
               E EEEEEEEEE  EEEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 176 VLTH---MMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 225
           VL      +P      +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 250 VLAPRATRLP---APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 21/79 (26%), Positives = 44/79 (55%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K   +++ +E + ++ ++E  EE+   +      + EE E++   E   + E E++E+ E
Sbjct: 262 KRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSE 321

Query: 245 EEEEEEEEEEGEEEEEEEE 263
           E EEE+ EEEG   ++ ++
Sbjct: 322 ESEEEKNEEEGGLSKKGKK 340

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 19/77 (24%), Positives = 56/77 (72%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
           +E EEE  EEE+++EE+++++++E+E++++++++E++E+E++++    ++   ++  E +
Sbjct: 43  KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNETD 102

Query: 252 EEEGEEEEEEEEEEEEE 268
            E G  + ++E ++  E
Sbjct: 103 NEAGFADSDDESDDGSE 119

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 24/82 (29%), Positives = 43/82 (52%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
           ++E  +EE E+E + E++ +E E  EE++ E+   E    +E  E   EE +++ EEE +
Sbjct: 195 HQELLQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESD 254

Query: 244 EEEEEEEEEEEGEEEEEEEEEE 265
           +E   E  E E E   +    +
Sbjct: 255 DESAWEGFESEYEPINKPVRPK 276

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 26/94 (27%), Positives = 57/94 (60%), Gaps = 5/94 (5%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K+E+E +++ E++ EE E++   E+  ++E E+    E+  ++ E+  ++ EE++++ EE
Sbjct: 64  KKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEE 123

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEE-----EEEAL 273
            + ++  E + + E E E++ +EE     EEEA 
Sbjct: 124 AKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAK 157

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 22/88 (25%), Positives = 51/88 (57%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            EE E++   E+  ++E E+    E+  ++ E+  ++ EE++++ EE + ++  E + + 
Sbjct: 77  AEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKA 136

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E E E++ +E  +++ EEE + +   EA
Sbjct: 137 EAEAEKKAKEEAKKQAEEEAKAKAAAEA 164

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 18/81 (22%), Positives = 49/81 (60%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
             EE +   +   ++ +E  +E  ++ ++  ++  E ++E +  EE E + +EE+ ++EE
Sbjct: 352 LYEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEE 411

Query: 244 EEEEEEEEEEEGEEEEEEEEE 264
            E++++E+ +E +E+ +++E 
Sbjct: 412 NEKKQKEQADEDKEKRQKDER 432

Length = 434

>gnl|CDD|220102 pfam09073, BUD22, BUD22

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 27/87 (31%), Positives = 51/87 (58%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K +++E +E  ++++EEE E E+E + EE  E++ ++EEEE+ + E+  + +    +  +
Sbjct: 157 KSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSD 216

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           EEE EE       E+  E E +E + E
Sbjct: 217 EEEGEEAPSINYNEDTSESESDESDSE 243

BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal. More recently it has been shown to be involved in ribosome biogenesis. Length = 424

>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 27/67 (40%), Positives = 37/67 (55%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +    EEE  EEE   EE   EE+EE   E E  ++EE EEE+ EEE + E+  +   E 
Sbjct: 463 RPLLPEEELAEEEAAAEEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRLREL 522

Query: 245 EEEEEEE 251
            +E+ EE
Sbjct: 523 AKEDPEE 529

Length = 542

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 20/95 (21%), Positives = 49/95 (51%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
             E E++  E+     E +   +E++ +  E+++ +E+E+EEE  ++   ++E + + +E 
Sbjct: 3917 LETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQEN 3976

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEEALWGYADM 279
              +   E E+ +  E+ + +E+E +        DM
Sbjct: 3977 NSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDM 4011

Length = 4600

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 10/72 (13%), Positives = 51/72 (70%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            ++++ ++++ ++++++E+++E++++++ ++E+EE++E +E E+  ++++   +E++ E 
Sbjct: 137 DDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEA 196

Query: 245 EEEEEEEEEEGE 256
             +  ++ +   
Sbjct: 197 LRQARKDAKLTA 208

Length = 509

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 19/93 (20%), Positives = 30/93 (32%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
            E  E  +E   E   +  + + E     EE  E + E E+  +   +     + + E  
Sbjct: 335 AEVAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAA 394

Query: 248 EEEEEEEGEEEEEEEEEEEEEEEEALWGYADMG 280
               EE      E  +E E E  E      D  
Sbjct: 395 SAAPEEPAALASEAHDETEPEVPEKAAPIPDPA 427

Length = 460

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 17/49 (34%), Positives = 32/49 (65%)

Query: 220 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEE 268
            ++EEEE EEE  +E E+E+  E + E +E+++ E  + + E+E+ + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 31/89 (34%), Positives = 62/89 (69%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            K + EE ++ EE + + EE ++ EEE+++ E+ +++E EE+++ EE ++ EEE + +  E
Sbjct: 1606 KMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAE 1665

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            E ++ EE+++  EE ++ EE+E++  EAL
Sbjct: 1666 EAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 30/87 (34%), Positives = 61/87 (70%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            K++E EE+++ EE ++ EEE + +  EE ++ EE++++ EE ++ EE+E++  E  ++E 
Sbjct: 1639 KKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEA 1698

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            EE ++ EE + +E EE+++ EE ++ E
Sbjct: 1699 EEAKKAEELKKKEAEEKKKAEELKKAE 1725

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 29/87 (33%), Positives = 61/87 (70%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            K EEE+++ E+ +++E EE+++ EE ++ EEE + +  EE ++ EE++++ EE ++ EE+
Sbjct: 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED 1686

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            E++  E  ++  EE ++ EE +++E E
Sbjct: 1687 EKKAAEALKKEAEEAKKAEELKKKEAE 1713

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 29/87 (33%), Positives = 61/87 (70%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            K+ EE + + EE ++ EEE+++ E+ +++E EE+++ EE ++ EEE + +  EE ++ EE
Sbjct: 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            ++++ EE ++ EE+E++  E  ++E E
Sbjct: 1673 DKKKAEEAKKAEEDEKKAAEALKKEAE 1699

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 30/86 (34%), Positives = 63/86 (73%)

Query: 186  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            EE++++ EE ++ EE+E++  E  ++E EE ++ EE +++E EE+++ EE ++ EEE + 
Sbjct: 1671 EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKI 1730

Query: 246  EEEEEEEEEGEEEEEEEEEEEEEEEE 271
            + EE ++E  E++++ EE +++EEE+
Sbjct: 1731 KAEEAKKEAEEDKKKAEEAKKDEEEK 1756

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 30/87 (34%), Positives = 62/87 (71%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            K E+ +++E EE+++ EE ++ EEE + +  EE ++ EE++++ EE ++ EE+E++  E 
Sbjct: 1634 KVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA 1693

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
             ++E EE ++ EE +++E EE+++ EE
Sbjct: 1694 LKKEAEEAKKAEELKKKEAEEKKKAEE 1720

Length = 2084

>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 10/97 (10%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-------- 236
           K   EE+E+E+ + EEE+E+++E++++ E      ++  + +E E++EE           
Sbjct: 321 KSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDDEENSGLLSMKFMQ 380

Query: 237 --EEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
             E  ++EE + E EE   E E EEE +EEE EE  +
Sbjct: 381 RAEARKKEENDAEIEELRRELEGEEESDEEENEEPSK 417

This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome. Length = 728

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 38/88 (43%), Positives = 45/88 (51%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           + EE E E EE EE  EE +E+ E  +EE EE E   EE E+   E EE +EE EE+   
Sbjct: 310 RLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSA 369

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
             EE EE  E   EE  E E E  E   
Sbjct: 370 LLEELEELFEALREELAELEAELAEIRN 397

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 38/90 (42%), Positives = 45/90 (50%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
             + E EE EE  EE +E+ E  +EE EE E   EE E+   E EE +EE EE+     E
Sbjct: 313 ELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLE 372

Query: 243 EEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E EE  E   EE  E E E  E   E EE 
Sbjct: 373 ELEELFEALREELAELEAELAEIRNELEEL 402

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 38/89 (42%), Positives = 44/89 (49%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            E E     E  EE E E EE EE  EE +E+ E  +EE EE E   EE E+   E EE 
Sbjct: 300 LEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEA 359

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           +EE EE+     EE EE  E   EE   L
Sbjct: 360 KEELEEKLSALLEELEELFEALREELAEL 388

Length = 1163

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 32/87 (36%), Positives = 51/87 (58%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +E EEE  + +   E+E  E    +E+E+E+E +   E  + EEE EE+E+E+ +  ++ 
Sbjct: 242 EESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKM 301

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            E+E+E+EE     E   EEEE EE E
Sbjct: 302 MEDEDEDEEMEIVPESPVEEEESEEPE 328

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 31/87 (35%), Positives = 51/87 (58%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KE++E  E   +EE EEE  + +   E+E  E    +E+E+E+E +   E  + EEE EE
Sbjct: 230 KEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEE 289

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           +E+E+ +  +   E+E+E+EE E   E
Sbjct: 290 KEKEKRKRLKKMMEDEDEDEEMEIVPE 316

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 33/86 (38%), Positives = 52/86 (60%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E+E  E    +E+E+E+E +   E  + EEE EE+E+E+ +  ++  E+E+E+EE E   
Sbjct: 256 EDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVP 315

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
           E   EEEE  E E     ++EEE+EE
Sbjct: 316 ESPVEEEESEEPEPPPLPKKEEEKEE 341

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 23/34 (67%), Positives = 23/34 (67%)

Query: 235 EEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEE 268
               E EEEEEEEEE  EEE EEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 30/65 (46%), Positives = 48/65 (73%)

Query: 182 PFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
           P Y   E+E E+E  +EEEEEE+EE++EEEE+  ++EEE +EEEE+EE++++ ++ +E  
Sbjct: 22  PIYLWVEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETT 81

Query: 242 EEEEE 246
            E E 
Sbjct: 82  TEWEL 86

Length = 529

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 220 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEE 259
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 221 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEE 260
              +  EEE        E++++  E+EEE+++ E    EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 228
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 229
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 230
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 231
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 232
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 233
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 234
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 235
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 197 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 236
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 198 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 237
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 199 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 238
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 200 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 239
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 201 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 202 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 203 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 204 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 205 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 206 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 207 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 208 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 209 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 210 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 211 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 212 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 213 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 214 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 215 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 19/85 (22%), Positives = 45/85 (52%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
             +++ +   +++ +E + ++ ++E  EE+   +      + EE E++   E   + E E
Sbjct: 256 DDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIE 315

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEE 268
           ++E+ EE EEE  EEE    ++ ++
Sbjct: 316 QDEDSEESEEEKNEEEGGLSKKGKK 340

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 19/85 (22%), Positives = 45/85 (52%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
              ++ +   +++ +E + ++ ++E  EE+   +      + EE E++   E   + E E
Sbjct: 256 DDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIE 315

Query: 243 EEEEEEEEEEEEGEEEEEEEEEEEE 267
           ++E+ EE EEE+ EEE    ++ ++
Sbjct: 316 QDEDSEESEEEKNEEEGGLSKKGKK 340

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 23/87 (26%), Positives = 53/87 (60%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E++ EE E++   E+  ++E E+    E+  ++ E+  ++ EE++++ EE + ++  E +
Sbjct: 74  EQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAK 133

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            + E E E+  +EE +++ EEE + +A
Sbjct: 134 AKAEAEAEKKAKEEAKKQAEEEAKAKA 160

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 19/84 (22%), Positives = 50/84 (59%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           +++   ++E+E +++ E++ EE E++   E+  ++E E+    E+  ++ E+  ++ EE+
Sbjct: 58  QKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEK 117

Query: 248 EEEEEEEGEEEEEEEEEEEEEEEE 271
           +++ EE   ++  E + + E E E
Sbjct: 118 QKQAEEAKAKQAAEAKAKAEAEAE 141

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 20/89 (22%), Positives = 54/89 (60%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            ++++   ++E+E +++ E++ EE E++   E+  ++E E+    E+  ++ E+  ++ E
Sbjct: 56  QQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAE 115

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E++++ EE +  +  E + + E E E++A
Sbjct: 116 EKQKQAEEAKAKQAAEAKAKAEAEAEKKA 144

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 23/88 (26%), Positives = 54/88 (61%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K+ E++ EE E++   E+  ++E E+    E+  ++ E+  ++ EE++++ EE + ++  
Sbjct: 71  KKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAA 130

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E + + E E  ++ +EE +++ EEE +A
Sbjct: 131 EAKAKAEAEAEKKAKEEAKKQAEEEAKA 158

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 21/88 (23%), Positives = 52/88 (59%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
              E+  ++ E+  ++ EE++++ EE + ++  E + + E E E++ +EE +++ EEE +
Sbjct: 98  AAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAK 157

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            +   E +++  E +++ E E + + EA
Sbjct: 158 AKAAAEAKKKAAEAKKKAEAEAKAKAEA 185

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 16/69 (23%), Positives = 46/69 (66%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           ++ +E  +E  ++ ++  ++  E ++E +  EE E + +EE+ ++EE E++++E+ +E++
Sbjct: 365 DKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDK 424

Query: 247 EEEEEEEEG 255
           E+ +++E  
Sbjct: 425 EKRQKDERK 433

Length = 434

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 16/70 (22%), Positives = 47/70 (67%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           ++ +E  +E  ++ ++  ++  E ++E +  EE E + +EE+ ++EE E++++E+ +E++
Sbjct: 365 DKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDK 424

Query: 246 EEEEEEEEEG 255
           E+ +++E + 
Sbjct: 425 EKRQKDERKK 434

Length = 434

>gnl|CDD|220102 pfam09073, BUD22, BUD22

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 26/88 (29%), Positives = 54/88 (61%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K +++ ++ +++E +E  ++++EEE E E+E + EE  E++ ++EEEE+ + E+  + + 
Sbjct: 150 KAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDG 209

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
              +  +EEEGEE       E+  E E+
Sbjct: 210 MLVDSSDEEEGEEAPSINYNEDTSESES 237

BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal. More recently it has been shown to be involved in ribosome biogenesis. Length = 424

>gnl|CDD|220102 pfam09073, BUD22, BUD22

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 26/89 (29%), Positives = 53/89 (59%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            K+ ++ +++E +E  ++++EEE E E+E + EE  E++ ++EEEE+ + E+  + +   
Sbjct: 152 KKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGML 211

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            +  +EEE EE       E+  E E +E+
Sbjct: 212 VDSSDEEEGEEAPSINYNEDTSESESDES 240

BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal. More recently it has been shown to be involved in ribosome biogenesis. Length = 424

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 52/141 (36%), Positives = 64/141 (45%)

Query: 130  KTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANSCNVSDNSGSTDVLTHMMPFYKEEEE 189
            + + E+ ++ +   V+    E +       DE N   V +N    D           EE 
Sbjct: 993  ENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEEN 1052

Query: 190  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
             EE  EE  EE +EE  EE EE  EE  EE  EE  EE  EE EE  EE  EE  EE  E
Sbjct: 1053 VEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAE 1112

Query: 250  EEEEEGEEEEEEEEEEEEEEE 270
            E  EE  EE ++E  EE  EE
Sbjct: 1113 ENAEENAEEYDDENPEEHNEE 1133

Length = 1136

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 32/89 (35%), Positives = 54/89 (60%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KE   E +EE  +   E E+E  E   E ++ E+   ++EE  + + E  E+ EEE E++
Sbjct: 56  KEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKK 115

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E+E E++++E E++EEE EE  EE+ + L
Sbjct: 116 EKELEQKQQELEKKEEELEELIEEQLQEL 144

Length = 520

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 20/117 (17%), Positives = 57/117 (48%), Gaps = 16/117 (13%)

Query: 168  SDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 227
             ++   T+  ++       E +   +E++ +  E+++ +E+E+EEE  ++   ++E + +
Sbjct: 3913 EEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPD 3972

Query: 228  EEEEEEE----------------EEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEE 268
             +E   +                +E+E +  ++ + E+ + E  +E +EE + E++E
Sbjct: 3973 IQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDE 4029

Length = 4600

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 10/88 (11%), Positives = 14/88 (15%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KEE  +        E             EE       E       E              
Sbjct: 84  KEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSH 143

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
               E    E       ++     +   
Sbjct: 144 PGPHEPAPPESHNPSPNQQPSSFLQPSH 171

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 16/95 (16%), Positives = 29/95 (30%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
              +   E+  EE E    E E +     + E        +   +E  E +    ++   
Sbjct: 165 SFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPS 224

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEALWGYADMG 280
              ++  E  +E  E E E           Y  +G
Sbjct: 225 PNTQQAVEHEDEPTEPEREGPPFPGHRSHSYTVVG 259

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 14/86 (16%), Positives = 19/86 (22%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E+   + E + E  EE    E+EE  +        E             EE       E 
Sbjct: 63  EQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPEN 122

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
                 E                  E
Sbjct: 123 TSGSSPESPASHSPPPSPPSHPGPHE 148

Length = 413

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 30/83 (36%), Positives = 61/83 (73%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            K EE ++ EE+E++  E  ++E EE ++ EE +++E EE+++ EE ++ EEE + + EE 
Sbjct: 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEA 1735

Query: 245  EEEEEEEEEEGEEEEEEEEEEEE 267
            ++E EE++++ EE +++EEE+++
Sbjct: 1736 KKEAEEDKKKAEEAKKDEEEKKK 1758

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 29/87 (33%), Positives = 61/87 (70%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            K+ EEE+++ E+ +++E EE+++ EE ++ EEE + +  EE ++ EE++++ EE ++ EE
Sbjct: 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE 1685

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            +E++  E  + E EE ++ EE +++E 
Sbjct: 1686 DEKKAAEALKKEAEEAKKAEELKKKEA 1712

Length = 2084

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 23/74 (31%), Positives = 50/74 (67%)

Query: 200 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEE 259
           ++E+E+++ ++  +EEE+EE+EEE+ +   + + ++  + + EE+E+ + E+EE+G  E 
Sbjct: 25  DDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84

Query: 260 EEEEEEEEEEEEAL 273
           EE+  E+E  E+  
Sbjct: 85  EEDTPEDELAEKLR 98

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 19/84 (22%), Positives = 28/84 (33%)

Query: 189  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
            E+ +   E +    +E  E  E   E ++E  + EE  E  E    E E   +       
Sbjct: 926  EQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVA 985

Query: 249  EEEEEEGEEEEEEEEEEEEEEEEA 272
            E   E       E E    +  EA
Sbjct: 986  EVAAEVETVTAVEPEVAPAQVPEA 1009

Length = 1068

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 38/89 (42%), Positives = 44/89 (49%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
                E  EE E E EE EE  EE +E+ E  +EE EE E   EE E+   E EE +EE 
Sbjct: 304 ISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEEL 363

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           EE+     EE EE  E   EE  E E  L
Sbjct: 364 EEKLSALLEELEELFEALREELAELEAEL 392

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 39/89 (43%), Positives = 45/89 (50%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            EE E E EE EE  EE +E+ E  +EE EE E   EE E+   E EE +EE EE+    
Sbjct: 311 LEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSAL 370

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            EE EE  E   EE  E E E  E    L
Sbjct: 371 LEELEELFEALREELAELEAELAEIRNEL 399

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 38/89 (42%), Positives = 45/89 (50%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            +E E E     E  EE E E EE EE  EE +E+ E  +EE EE E   EE E+   E 
Sbjct: 297 IEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAEL 356

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           EE +EE EE+     EE EE  E   EE 
Sbjct: 357 EEAKEELEEKLSALLEELEELFEALREEL 385

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 38/88 (43%), Positives = 45/88 (51%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EE +E+ E  +EE EE E   EE E+   E EE +EE EE+     EE EE  E   EE 
Sbjct: 326 EELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREEL 385

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            E E E  E   E EE + E E  EE L
Sbjct: 386 AELEAELAEIRNELEELKREIESLEERL 413

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 37/89 (41%), Positives = 45/89 (50%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            EE EE  EE +E+ E  +EE EE E   EE E+   E EE +EE EE+     EE EE 
Sbjct: 318 LEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEEL 377

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            E   EE  E E E  E   E EE +  +
Sbjct: 378 FEALREELAELEAELAEIRNELEELKREI 406

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 39/89 (43%), Positives = 45/89 (50%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            EE E E     E  EE E E EE EE  EE +E+ E  +EE EE E   EE E+   E 
Sbjct: 297 IEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAEL 356

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           EE +EE EE+     EE EE  E   E L
Sbjct: 357 EEAKEELEEKLSALLEELEELFEALREEL 385

Length = 1163

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 35/94 (37%), Positives = 54/94 (57%)

Query: 171 SGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 230
           SG  DV+           +E+E+E+E +   E  + EEE EE+E+E+ +  ++  E+E+E
Sbjct: 248 SGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDE 307

Query: 231 EEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEE 264
           +EE E   E   EEEE EE E     ++EEE+EE
Sbjct: 308 DEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEE 341

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 23/34 (67%), Positives = 23/34 (67%)

Query: 237 EEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEE 270
               E EEEEEEEEE  E EEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 23/34 (67%), Positives = 23/34 (67%)

Query: 233 EEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEE 266
               E EEEEEEEEE  EEEEE EEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 23/34 (67%), Positives = 23/34 (67%)

Query: 230 EEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEE 263
               E EEEEEEEEE  EEEEEEEE EE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 222 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEE 261
              +  EEE        E++++  E+EEE+++  +   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 21/89 (23%), Positives = 50/89 (56%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K+ +++++ +   +++ +E + ++ ++E  EE+   +      + EE E++   E   + 
Sbjct: 253 KKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKP 312

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E E++E+ EE EEE+ EEE    ++ + L
Sbjct: 313 EIEQDEDSEESEEEKNEEEGGLSKKGKKL 341

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 21/89 (23%), Positives = 53/89 (59%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K   ++E+E +++ E++ EE E++   E+  ++E E+    E+  ++ E+  ++ EE+++
Sbjct: 60  KPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQK 119

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           + EE + ++  E + + E E E++ +E  
Sbjct: 120 QAEEAKAKQAAEAKAKAEAEAEKKAKEEA 148

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 20/88 (22%), Positives = 51/88 (57%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            E+  ++E E+    E+  ++ E+  ++ EE++++ EE + ++  E + + E E E++ +
Sbjct: 86  AEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAK 145

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           EE +++ EEE + +   E +++  E + 
Sbjct: 146 EEAKKQAEEEAKAKAAAEAKKKAAEAKK 173

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 19/82 (23%), Positives = 50/82 (60%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K  EE +   +   ++ +E  +E  ++ ++  ++  E ++E +  EE E + +EE+ ++E
Sbjct: 351 KLYEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQE 410

Query: 245 EEEEEEEEEEGEEEEEEEEEEE 266
           E E++++E+  E++E+ +++E 
Sbjct: 411 ENEKKQKEQADEDKEKRQKDER 432

Length = 434

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 18/79 (22%), Positives = 49/79 (62%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
           EE +   +   ++ +E  +E  ++ ++  ++  E ++E +  EE E + +EE+ ++EE E
Sbjct: 354 EEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENE 413

Query: 250 EEEEEGEEEEEEEEEEEEE 268
           ++++E  +E++E+ +++E 
Sbjct: 414 KKQKEQADEDKEKRQKDER 432

Length = 434

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 18/90 (20%), Positives = 60/90 (66%)

Query: 182 PFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
           P Y  E  E +++++E  EE E+ ++E EE+++ + ++++ ++++++++++++++++++ 
Sbjct: 51  PIYDAEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKS 110

Query: 242 EEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           E+++E+E E++ E   +   E      E +
Sbjct: 111 EKKDEKEAEDKLEDLTKSYSETLSTLSELK 140

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 31/73 (42%), Positives = 51/73 (69%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K +E+EEE+E  +E  + +EEE++ E EE E+E+E  E E E+  E++E+EE  +EEE+E
Sbjct: 35  KADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKE 94

Query: 245 EEEEEEEEEEGEE 257
           EE E+ +++E   
Sbjct: 95  EEAEDVKQQEVFS 107

Bacillus spores are protected by a protein shell consisting of over 50 different polypeptides, known as the coat. This family of proteins has an important morphogenetic role in coat assembly, it is involved in the assembly of at least 5 different coat proteins including CotB, CotG, CotS, CotSA and CotW. It is likely to act at a late stage of coat assembly. Length = 185

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 44.6 bits (105), Expect = 4e-05
 Identities = 23/104 (22%), Positives = 50/104 (48%), Gaps = 17/104 (16%)

Query: 187  EEEEEEEEEEEEEEEEEE-----------------EEEEEEEEEEEEEEEEEEEEEEEEE 229
             E E  + EEE ++ +EE                 +E  EE+  E E++  E+     E 
Sbjct: 3874 SENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNES 3933

Query: 230  EEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            +   +E++ +  E+++ +E+E+EEE  ++   ++E + + +E  
Sbjct: 3934 DLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENN 3977

Length = 4600

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 9/88 (10%), Positives = 63/88 (71%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
             +++ ++E +  ++ E++   +++++    ++ +   + +++++++++++ ++++ +++
Sbjct: 91  PAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDD 150

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           +++E+++E++ +++ ++E+EE++E +E 
Sbjct: 151 DDDEDDDEDDDDDDVDDEDEEKKEAKEL 178

Length = 509

>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 23/110 (20%), Positives = 55/110 (50%)

Query: 161 EANSCNVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 220
           E    +  +N  + +            E +E+++EE+E + +  EE+    + ++ +   
Sbjct: 67  ERAHKSKKENKLAIEDADKSTNLDASNEGDEDDDEEDEIKRKRIEEDARNSDADDSDSSS 126

Query: 221 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEE 270
           + +  +++ ++++ E+E      E E+ ++E  E +E EEEE+  EEE+ 
Sbjct: 127 DSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKA 176

This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing. Length = 241

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 17/53 (32%), Positives = 33/53 (62%)

Query: 205 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEE 257
            ++EEEE EEE  +E E+E+  E + E +E+++ E  + + E+E+ + E  + 
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKP 146

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 17/49 (34%), Positives = 32/49 (65%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 239
            ++EEEE EEE  +E E+E+  E + E +E+++ E  + + E+E+ + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 17/49 (34%), Positives = 32/49 (65%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240
            ++EEEE EEE  +E E+E+  E + E +E+++ E  + + E+E+ + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 17/49 (34%), Positives = 32/49 (65%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
            ++EEEE EEE  +E E+E+  E + E +E+++ E  + + E+E+ + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 17/49 (34%), Positives = 32/49 (65%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
            ++EEEE EEE  +E E+E+  E + E +E+++ E  + + E+E+ + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 17/49 (34%), Positives = 32/49 (65%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            ++EEEE EEE  +E E+E+  E + E +E+++ E  + + E+E+ + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 17/49 (34%), Positives = 32/49 (65%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            ++EEEE EEE  +E E+E+  E + E +E+++ E  + + E+E+ + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 17/49 (34%), Positives = 32/49 (65%)

Query: 197 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            ++EEEE EEE  +E E+E+  E + E +E+++ E  + + E+E+ + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 17/49 (34%), Positives = 32/49 (65%)

Query: 198 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
            ++EEEE EEE  +E E+E+  E + E +E+++ E  + + E+E+ + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 17/49 (34%), Positives = 32/49 (65%)

Query: 199 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
            ++EEEE EEE  +E E+E+  E + E +E+++ E  + + E+E+ + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 17/49 (34%), Positives = 32/49 (65%)

Query: 200 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
            ++EEEE EEE  +E E+E+  E + E +E+++ E  + + E+E+ + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 17/49 (34%), Positives = 32/49 (65%)

Query: 201 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
            ++EEEE EEE  +E E+E+  E + E +E+++ E  + + E+E+ + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 17/49 (34%), Positives = 32/49 (65%)

Query: 202 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
            ++EEEE EEE  +E E+E+  E + E +E+++ E  + + E+E+ + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 17/49 (34%), Positives = 32/49 (65%)

Query: 203 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
            ++EEEE EEE  +E E+E+  E + E +E+++ E  + + E+E+ + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 17/49 (34%), Positives = 32/49 (65%)

Query: 204 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
            ++EEEE EEE  +E E+E+  E + E +E+++ E  + + E+E+ + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 30/86 (34%), Positives = 61/86 (70%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            K EE ++ EEE+++ E+ +++E EE+++ EE ++ EEE + +  EE ++ EE++++ EE 
Sbjct: 1621 KAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEE 270
            ++ EE+E++  E  ++E EE ++ EE
Sbjct: 1681 KKAEEDEKKAAEALKKEAEEAKKAEE 1706

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 31/87 (35%), Positives = 62/87 (71%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            K+ EE+E++  E  ++E EE ++ EE +++E EE+++ EE ++ EEE + + EE ++E E
Sbjct: 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAE 1740

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            E++++ EE + +EEE+++    ++EEE
Sbjct: 1741 EDKKKAEEAKKDEEEKKKIAHLKKEEE 1767

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 44.4 bits (104), Expect = 4e-05
 Identities = 30/85 (35%), Positives = 62/85 (72%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            K++ EE ++ EE+E++  E  ++E EE ++ EE +++E EE+++ EE ++ EEE + + E
Sbjct: 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAE 1733

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEE 269
            E ++E EE++ + EE +++EEE+++
Sbjct: 1734 EAKKEAEEDKKKAEEAKKDEEEKKK 1758

Length = 2084

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 23/75 (30%), Positives = 50/75 (66%)

Query: 199 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEE 258
           ++E+E+++ ++  +EEE+EE+EEE+ +   + + ++  + + EE+E+ + E+EE+   E 
Sbjct: 25  DDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84

Query: 259 EEEEEEEEEEEEEAL 273
           EE+  E+E  E+  L
Sbjct: 85  EEDTPEDELAEKLRL 99

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 19/87 (21%), Positives = 27/87 (31%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            EE    E    E       E+ +   E +    +E  E  E   E ++E  + EE  E 
Sbjct: 906 PEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAET 965

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            E    E E   +       E   E  
Sbjct: 966 AEVVVAEPEVVAQPAAPVVAEVAAEVE 992

Length = 1068

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 23/34 (67%), Positives = 23/34 (67%)

Query: 228 EEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEE 261
               E EEEEEEEEE  EEEEEEEEEE    EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 23/34 (67%), Positives = 23/34 (67%)

Query: 238 EEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
               E EEEEEEEEE   EEEEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 28/59 (47%), Positives = 46/59 (77%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           E+E E+E  +EEEEEE+EE++EEEE+  ++EEE +EEEE+EE++++ ++ +E   E E 
Sbjct: 28  EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86

Length = 529

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 28/59 (47%), Positives = 46/59 (77%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
           E+E E+E  +EEEEEE+EE++EEEE+  ++EEE +EEEE+EE++++ ++ +E   E E 
Sbjct: 28  EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86

Length = 529

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 28/59 (47%), Positives = 46/59 (77%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
           E+E E+E  +EEEEEE+EE++EEEE+  ++EEE +EEEE+EE++++ ++ +E   E E 
Sbjct: 28  EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86

Length = 529

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 28/59 (47%), Positives = 46/59 (77%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
           E+E E+E  +EEEEEE+EE++EEEE+  ++EEE +EEEE+EE++++ ++ +E   E E 
Sbjct: 28  EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86

Length = 529

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 28/59 (47%), Positives = 46/59 (77%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
           E+E E+E  +EEEEEE+EE++EEEE+  ++EEE +EEEE+EE++++ ++ +E   E E 
Sbjct: 28  EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86

Length = 529

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 28/59 (47%), Positives = 46/59 (77%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
           E+E E+E  +EEEEEE+EE++EEEE+  ++EEE +EEEE+EE++++ ++ +E   E E 
Sbjct: 28  EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86

Length = 529

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 28/59 (47%), Positives = 46/59 (77%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253
           E+E E+E  +EEEEEE+EE++EEEE+  ++EEE +EEEE+EE++++ ++ +E   E E 
Sbjct: 28  EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86

Length = 529

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 28/59 (47%), Positives = 46/59 (77%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254
           E+E E+E  +EEEEEE+EE++EEEE+  ++EEE +EEEE+EE++++ ++ +E   E E 
Sbjct: 28  EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86

Length = 529

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 28/59 (47%), Positives = 46/59 (77%)

Query: 206 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEE 264
           E+E E+E  +EEEEEE+EE++EEEE+  ++EEE +EEEE+EE++++ ++ +E   E E 
Sbjct: 28  EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86

Length = 529

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 28/59 (47%), Positives = 46/59 (77%)

Query: 202 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEE 260
           E+E E+E  +EEEEEE+EE++EEEE+  ++EEE +EEEE+EE++++ ++ +E   E E 
Sbjct: 28  EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86

Length = 529

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 18/86 (20%), Positives = 46/86 (53%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           +E  EE+   +      + EE E++   E   + E E++E+ EE EEE+ EEE    ++ 
Sbjct: 279 DEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKG 338

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
           ++ ++ + +    ++++ +  ++ ++
Sbjct: 339 KKLKKLKGKKNGLDKDDSDSGDDSDD 364

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 19/88 (21%), Positives = 46/88 (52%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
           Y  ++ ++E  EE+   +      + EE E++   E   + E E++E+ EE EEE+ EEE
Sbjct: 272 YDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEE 331

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
               ++ ++ +  + ++   ++++ +  
Sbjct: 332 GGLSKKGKKLKKLKGKKNGLDKDDSDSG 359

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 18/77 (23%), Positives = 55/77 (71%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
           +E EEE  EEE+++EE+++++++E+E++++++++E++E+E++++    ++   ++  E +
Sbjct: 43  KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNETD 102

Query: 250 EEEEEGEEEEEEEEEEE 266
            E    + ++E ++  E
Sbjct: 103 NEAGFADSDDESDDGSE 119

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 19/81 (23%), Positives = 56/81 (69%), Gaps = 3/81 (3%)

Query: 197 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGE 256
           +E EEE  EEE+++EE+++++++E+E++++++++E++E+E++++    ++   ++  E +
Sbjct: 43  KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNETD 102

Query: 257 EE---EEEEEEEEEEEEEALW 274
            E    + ++E ++  E   W
Sbjct: 103 NEAGFADSDDESDDGSEYVFW 123

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 25/79 (31%), Positives = 41/79 (51%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253
           E+ +E  +EE E+E + E++ +E E  EE++ E+   E    +E  E   EE +++ EEE
Sbjct: 193 EDHQELLQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEE 252

Query: 254 EGEEEEEEEEEEEEEEEEA 272
             +E   E  E E E    
Sbjct: 253 SDDESAWEGFESEYEPINK 271

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 24/90 (26%), Positives = 44/90 (48%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            E++ +E E  EE++ E+   E    +E  E   EE +++ EEE ++E   E  E E E 
Sbjct: 209 AEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEP 268

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEALW 274
             +    + + + +  +E+  +E E EA  
Sbjct: 269 INKPVRPKRKTKAQRNKEKRRKELEREAKE 298

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 18/79 (22%), Positives = 49/79 (62%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
           EE +   +   ++ +E  +E  ++ ++  ++  E ++E +  EE E + +EE+ ++EE E
Sbjct: 354 EEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENE 413

Query: 253 EEGEEEEEEEEEEEEEEEE 271
           ++ +E+ +E++E+ +++E 
Sbjct: 414 KKQKEQADEDKEKRQKDER 432

Length = 434

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 18/79 (22%), Positives = 49/79 (62%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
           EE +   +   ++ +E  +E  ++ ++  ++  E ++E +  EE E + +EE+ ++EE E
Sbjct: 354 EEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENE 413

Query: 252 EEEGEEEEEEEEEEEEEEE 270
           +++ E+ +E++E+ +++E 
Sbjct: 414 KKQKEQADEDKEKRQKDER 432

Length = 434

>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 27/68 (39%), Positives = 36/68 (52%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
                 EEE  EEE   EE   EE+EE   E E  ++EE EEE+ EEE + E+  +   E
Sbjct: 462 LRPLLPEEELAEEEAAAEEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRLRE 521

Query: 245 EEEEEEEE 252
             +E+ EE
Sbjct: 522 LAKEDPEE 529

Length = 542

>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 28/66 (42%), Positives = 37/66 (56%)

Query: 182 PFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
           P   EEE  EEE   EE   EE+EE   E E  ++EE EEE+ EEE + E+  +   E  
Sbjct: 464 PLLPEEELAEEEAAAEEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRLRELA 523

Query: 242 EEEEEE 247
           +E+ EE
Sbjct: 524 KEDPEE 529

Length = 542

>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 27/66 (40%), Positives = 36/66 (54%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEG 255
               EEE  EEE   EE   EE+EE   E E  ++EE EEE+ EEE + E+  +   E  
Sbjct: 464 PLLPEEELAEEEAAAEEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRLRELA 523

Query: 256 EEEEEE 261
           +E+ EE
Sbjct: 524 KEDPEE 529

Length = 542

>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 27/81 (33%), Positives = 40/81 (49%)

Query: 177 LTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 236
           LT  +P    E + E   +E+   E     +EE ++   E  + EE++    E    + E
Sbjct: 101 LTVSVPIASGESDLENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLE 160

Query: 237 EEEEEEEEEEEEEEEEEEGEE 257
             EEEEEE  EEEEE +E E+
Sbjct: 161 PPEEEEEEIAEEEEEVKEPED 181

Members of this family contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of pfam00520 and, less often, one copy of pfam00612. Length = 230

>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter subunit G; Reviewed

 Score = 43.1 bits (101), Expect = 4e-05
 Identities = 28/74 (37%), Positives = 48/74 (64%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           ++E+ E+  +E EE EE  E E  EE+ +E E++EE+E E EE+  EE+ ++ E E  E+
Sbjct: 124 RQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQ 183

Query: 245 EEEEEEEEEEGEEE 258
           +E E E +++  E+
Sbjct: 184 DESETESDDDKTEK 197

Length = 197

>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter subunit G; Reviewed

 Score = 43.1 bits (101), Expect = 4e-05
 Identities = 28/73 (38%), Positives = 48/73 (65%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
           +E+ E+  +E EE EE  E E  EE+ +E E++EE+E E EE+  EE+ ++ E E  E++
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQD 184

Query: 250 EEEEEGEEEEEEE 262
           E E E ++++ E+
Sbjct: 185 ESETESDDDKTEK 197

Length = 197

>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM protein

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 22/91 (24%), Positives = 34/91 (37%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
           F K ++E ++    +   +EE +E  E                +   E     E  + +E
Sbjct: 85  FEKSDKESQDYSSSDSGFDEEPDEPAETAGSLRPIRSSAAAYRDINRELGSFYEYPKTDE 144

Query: 243 EEEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E+E   E EE E     E     E EE+ AL
Sbjct: 145 EKELLREVEELESRLATEPSPAPELEEQLAL 175

Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage [Cellular processes, DNA transformation]. Length = 410

>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 19/75 (25%), Positives = 35/75 (46%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            EE E ++   +      E++ ++    E+ E E    EE E EEE E+ E+E +  +  
Sbjct: 343 NEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRI 402

Query: 245 EEEEEEEEEEGEEEE 259
            +++E E      +E
Sbjct: 403 CDDDELENHFRAADE 417

Length = 776

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 44.6 bits (105), Expect = 5e-05
 Identities = 22/117 (18%), Positives = 53/117 (45%), Gaps = 30/117 (25%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------------------EEEEEEEEE-- 224
            K+ +E+E+EEE  ++   ++E + + +E                     E+E +  ++  
Sbjct: 3948 KDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSD 4007

Query: 225  ----------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
                      E +EE + E++E  ++E+  EE    +E+  +++  +  E++E+  E
Sbjct: 4008 LEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNE 4064

Length = 4600

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 9/88 (10%), Positives = 62/88 (70%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K   +++ ++E +  ++ E++   +++++    ++ +   + +++++++++++ ++++ +
Sbjct: 89  KAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDID 148

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           +++++E+++E +++++ ++E+EE++E  
Sbjct: 149 DDDDDEDDDEDDDDDDVDDEDEEKKEAK 176

Length = 509

>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 22/70 (31%), Positives = 39/70 (55%)

Query: 211 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEE 270
            ++E +E EEE  E E   ++E +E +E+EE +E  E+  E+E   +  +EE+ E+ +E 
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDEL 986

Query: 271 EALWGYADMG 280
           E+   Y    
Sbjct: 987 ESKAAYDSRP 996

Length = 1001

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 17/49 (34%), Positives = 32/49 (65%)

Query: 217 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEE 265
            ++EEEE EEE  +E E+E+  E + E +E+++ E  + + E+E+ + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 19/88 (21%), Positives = 28/88 (31%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +E    E    E       E+ +   E +    +E  E  E   E ++E  + EE  E  
Sbjct: 907 EEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETA 966

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E    E E   +       E   E E  
Sbjct: 967 EVVVAEPEVVAQPAAPVVAEVAAEVETV 994

Length = 1068

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 36/88 (40%), Positives = 44/88 (50%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           + EE EE  EE +E+ E  +EE EE E   EE E+   E EE +EE EE+     EE EE
Sbjct: 317 ELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEE 376

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
             E   EE    E E  E   E EE + 
Sbjct: 377 LFEALREELAELEAELAEIRNELEELKR 404

Length = 1163

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 23/34 (67%), Positives = 23/34 (67%)

Query: 236 EEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEE 269
               E EEEEEEEEE  EE EEEEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 23/34 (67%), Positives = 23/34 (67%)

Query: 223 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGE 256
               E EEEEEEEEE  EEEEEEEEEEE   E E
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 23/34 (67%), Positives = 23/34 (67%)

Query: 231 EEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEE 264
               E EEEEEEEEE  EEEEEEE EEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 23/34 (67%), Positives = 23/34 (67%)

Query: 232 EEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEE 265
               E EEEEEEEEE  EEEEEE EEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 28/59 (47%), Positives = 46/59 (77%)

Query: 201 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEE 259
           E+E E+E  +EEEEEE+EE++EEEE+  ++EEE +EEEE+EE++++ ++ +E   E E 
Sbjct: 28  EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86

Length = 529

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 11/42 (26%), Positives = 22/42 (52%)

Query: 232 EEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
              +  EEE        E++++  E+EEE+++ E+   EE +
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEIV 301

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 224 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEE 263
              +  EEE        E++++  E+EEE++  E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 225 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEE 264
              +  EEE        E++++  E+EEE+ + E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 25/83 (30%), Positives = 43/83 (51%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
           E+ +E  +EE E+E + E++ +E E  EE++ E+   E    +E  E   EE +++ EEE
Sbjct: 193 EDHQELLQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEE 252

Query: 250 EEEEEGEEEEEEEEEEEEEEEEA 272
            ++E   E  E E E   +    
Sbjct: 253 SDDESAWEGFESEYEPINKPVRP 275

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 25/76 (32%), Positives = 42/76 (55%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
           E+ +E  +EE E+E + E++ +E E  EE++ E+   E    +E  E   EE +++ EEE
Sbjct: 193 EDHQELLQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEE 252

Query: 249 EEEEEEGEEEEEEEEE 264
            ++E   E  E E E 
Sbjct: 253 SDDESAWEGFESEYEP 268

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|220102 pfam09073, BUD22, BUD22

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 25/88 (28%), Positives = 52/88 (59%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            ++ +++E +E  ++++EEE E E+E + EE  E++ ++EEEE+ + E+  + +    + 
Sbjct: 155 TKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDS 214

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            +EEE EE       E+  E E +E ++
Sbjct: 215 SDEEEGEEAPSINYNEDTSESESDESDS 242

BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal. More recently it has been shown to be involved in ribosome biogenesis. Length = 424

>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 27/66 (40%), Positives = 36/66 (54%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
               EEE  EEE   EE   EE+EE   E E  ++EE EEE+ EEE + E+  +   E  
Sbjct: 464 PLLPEEELAEEEAAAEEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRLRELA 523

Query: 248 EEEEEE 253
           +E+ EE
Sbjct: 524 KEDPEE 529

Length = 542

>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 27/66 (40%), Positives = 36/66 (54%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
               EEE  EEE   EE   EE+EE   E E  ++EE EEE+ EEE + E+  +   E  
Sbjct: 464 PLLPEEELAEEEAAAEEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRLRELA 523

Query: 249 EEEEEE 254
           +E+ EE
Sbjct: 524 KEDPEE 529

Length = 542

>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 27/66 (40%), Positives = 36/66 (54%)

Query: 200 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEE 259
               EEE  EEE   EE   EE+EE   E E  ++EE EEE+ EEE + E+  +   E  
Sbjct: 464 PLLPEEELAEEEAAAEEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRLRELA 523

Query: 260 EEEEEE 265
           +E+ EE
Sbjct: 524 KEDPEE 529

Length = 542

>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter subunit G; Reviewed

 Score = 43.1 bits (101), Expect = 5e-05
 Identities = 28/73 (38%), Positives = 48/73 (65%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253
           +E+ E+  +E EE EE  E E  EE+ +E E++EE+E E EE+  EE+ ++ E E  E++
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQD 184

Query: 254 EGEEEEEEEEEEE 266
           E E E ++++ E+
Sbjct: 185 ESETESDDDKTEK 197

Length = 197

>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter subunit G; Reviewed

 Score = 42.7 bits (100), Expect = 5e-05
 Identities = 28/73 (38%), Positives = 48/73 (65%)

Query: 199 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEE 258
           +E+ E+  +E EE EE  E E  EE+ +E E++EE+E E EE+  EE+ ++ E E  E++
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQD 184

Query: 259 EEEEEEEEEEEEE 271
           E E E ++++ E+
Sbjct: 185 ESETESDDDKTEK 197

Length = 197

>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter subunit G; Reviewed

 Score = 42.7 bits (100), Expect = 5e-05
 Identities = 28/73 (38%), Positives = 48/73 (65%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
           +E+ E+  +E EE EE  E E  EE+ +E E++EE+E E EE+  EE+ ++ E E  E++
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQD 184

Query: 252 EEEGEEEEEEEEE 264
           E E E ++++ E+
Sbjct: 185 ESETESDDDKTEK 197

Length = 197

>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 26/115 (22%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------------------- 224
            +EEE  ++E +   E E EE      EEE  + +   +E                    
Sbjct: 240 VQEEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEPRRVFKKKGQKRTTRRVKMR 299

Query: 225 ----EEEEEEEEEEEEEEEEEEEEEEEEEEE---EEEGEEEEEEEEEEEEEEEEA 272
               +  +E    E +  EE  + +E+   E      G +E++E+E++EE +EE 
Sbjct: 300 PVRAKPSDEPSLPESDIHEEIPKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEV 354

Genome duplication is precisely regulated by cyclin-dependent kinases CDKs, which bring about the onset of S phase by activating replication origins and then prevent relicensing of origins until mitosis is completed. The optimum sequence motif for CDK phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found to have at least 11 potential phosphorylation sites. Drc1 is required for DNA synthesis and S-M replication checkpoint control. Drc1 associates with Cdc2 and is phosphorylated at the onset of S phase when Cdc2 is activated. Thus Cdc2 promotes DNA replication by phosphorylating Drc1 and regulating its association with Cut5. Sld2 and Sld3 represent the minimal set of S-CDK substrates required for DNA replication. Length = 397

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 24/46 (52%), Positives = 38/46 (82%)

Query: 212 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEE 257
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++EG++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 44.2 bits (104), Expect = 6e-05
 Identities = 18/78 (23%), Positives = 42/78 (53%)

Query: 190  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
            +E  EE+  E E++  E+     E +   +E++ +  E+++ +E+E+EEE  ++   ++E
Sbjct: 3909 DEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDE 3968

Query: 250  EEEEEGEEEEEEEEEEEE 267
             + +  E   +   E E+
Sbjct: 3969 IQPDIQENNSQPPPENED 3986

Length = 4600

>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 18/83 (21%), Positives = 38/83 (45%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           +E+E E  E+ E E E + E+ EE+E+E++ E  E     ++       +     +  + 
Sbjct: 661 DEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRALPKVLNLPDALDG 720

Query: 246 EEEEEEEEEGEEEEEEEEEEEEE 268
            + E+EE   +E+    +    +
Sbjct: 721 GDSEDEEGMDDEQMMRLDTYLAQ 743

This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localised exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units. Length = 784

>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 19/85 (22%), Positives = 42/85 (49%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           +++E+E E  E+ E E E + E+ EE+E+E++ E  E     ++       +     +  
Sbjct: 659 DDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRALPKVLNLPDAL 718

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEE 270
           +  + E+EEG ++E+    +    +
Sbjct: 719 DGGDSEDEEGMDDEQMMRLDTYLAQ 743

This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localised exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units. Length = 784

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 12/84 (14%), Positives = 49/84 (58%)

Query: 159 TDEANSCNVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 218
             + +   V D                ++ ++++ ++++++E+++E++++++ ++E+EE+
Sbjct: 113 DKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEK 172

Query: 219 EEEEEEEEEEEEEEEEEEEEEEEE 242
           +E +E E+  ++++   +E++ E 
Sbjct: 173 KEAKELEKLSDDDDFVWDEDDSEA 196

Length = 509

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 17/49 (34%), Positives = 31/49 (63%)

Query: 216 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEE 264
            ++EEEE EEE  +E E+E+  E + E +E+++ E  +   E+E+ + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 17/49 (34%), Positives = 31/49 (63%)

Query: 211 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEE 259
            ++EEEE EEE  +E E+E+  E + E +E+++ E  + + E+E  + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 19/83 (22%), Positives = 28/83 (33%)

Query: 188  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
            E+ +   E +    +E  E  E   E ++E  + EE  E  E    E E   +       
Sbjct: 926  EQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVA 985

Query: 248  EEEEEEEGEEEEEEEEEEEEEEE 270
            E   E E     E E    +  E
Sbjct: 986  EVAAEVETVTAVEPEVAPAQVPE 1008

Length = 1068

>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 19/53 (35%), Positives = 34/53 (64%)

Query: 205 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEE 257
           EE   EE EE E  E+ E   ++   E+ EE EEE++++ +++ +E+++EG E
Sbjct: 333 EENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGVE 385

Length = 390

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 219 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEE 258
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 229 EEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEE 268
              +  EEE        E++++  E+ EE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 218 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEE 257
              +  EEE        E++++  E+EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 43.8 bits (103), Expect = 6e-05
 Identities = 19/85 (22%), Positives = 46/85 (54%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
             ++E  EE+   +      + EE E++   E   + E E++E+ EE EEE+ EEE    
Sbjct: 276 DGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLS 335

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEE 269
           ++ ++ ++ +G++   ++++ +  +
Sbjct: 336 KKGKKLKKLKGKKNGLDKDDSDSGD 360

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 43.8 bits (103), Expect = 6e-05
 Identities = 19/80 (23%), Positives = 56/80 (70%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K  +E EEE  EEE+++EE+++++++E+E++++++++E++E+E++++    ++   ++  
Sbjct: 40  KLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGN 99

Query: 245 EEEEEEEEEEGEEEEEEEEE 264
           E + E    + ++E ++  E
Sbjct: 100 ETDNEAGFADSDDESDDGSE 119

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 23/88 (26%), Positives = 53/88 (60%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KE E+    E+  ++ E+  ++ EE++++ EE + ++  E + + E E E++ +EE +++
Sbjct: 92  KELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQ 151

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            EEE + +   E +++  E +++ E EA
Sbjct: 152 AEEEAKAKAAAEAKKKAAEAKKKAEAEA 179

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 20/88 (22%), Positives = 51/88 (57%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +  E+  ++E E+    E+  ++ E+  ++ EE++++ EE + ++  E + + E E E++
Sbjct: 84  RAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKK 143

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            +EE +++ E E + +   E +++  EA
Sbjct: 144 AKEEAKKQAEEEAKAKAAAEAKKKAAEA 171

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 22/88 (25%), Positives = 52/88 (59%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           ++ EE E++   E+  ++E E+    E+  ++ E+  ++ EE++++ EE + ++  E + 
Sbjct: 75  QQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKA 134

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           + E E E++  EE +++ EEE + +  A
Sbjct: 135 KAEAEAEKKAKEEAKKQAEEEAKAKAAA 162

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 18/79 (22%), Positives = 50/79 (63%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
           EE +   +   ++ +E  +E  ++ ++  ++  E ++E +  EE E + +EE+ ++EE E
Sbjct: 354 EEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENE 413

Query: 249 EEEEEEGEEEEEEEEEEEE 267
           ++++E+ +E++E+ +++E 
Sbjct: 414 KKQKEQADEDKEKRQKDER 432

Length = 434

>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 27/66 (40%), Positives = 36/66 (54%)

Query: 197 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGE 256
               EEE  EEE   EE   EE+EE   E E  ++EE EEE+ EEE + E+  +   E  
Sbjct: 464 PLLPEEELAEEEAAAEEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRLRELA 523

Query: 257 EEEEEE 262
           +E+ EE
Sbjct: 524 KEDPEE 529

Length = 542

>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 27/66 (40%), Positives = 36/66 (54%)

Query: 204 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEE 263
               EEE  EEE   EE   EE+EE   E E  ++EE EEE+ EEE + E+  +   E  
Sbjct: 464 PLLPEEELAEEEAAAEEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRLRELA 523

Query: 264 EEEEEE 269
           +E+ EE
Sbjct: 524 KEDPEE 529

Length = 542

>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 28/69 (40%), Positives = 36/69 (52%)

Query: 205 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEE 264
               EEE  EEE   EE   EE+EE   E E  ++EE EEE+ EEE + E   +   E  
Sbjct: 464 PLLPEEELAEEEAAAEEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRLRELA 523

Query: 265 EEEEEEEAL 273
           +E+ EE A 
Sbjct: 524 KEDPEEVAQ 532

Length = 542

>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

 Score = 43.8 bits (103), Expect = 6e-05
 Identities = 20/80 (25%), Positives = 37/80 (46%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
            E+   EE E ++   +      E++ ++    E+ E E    EE E EEE E+ E+E +
Sbjct: 338 NEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDEND 397

Query: 251 EEEEGEEEEEEEEEEEEEEE 270
             +   +++E E      +E
Sbjct: 398 HSKRICDDDELENHFRAADE 417

Length = 776

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 37/46 (80%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 230
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 37/46 (80%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 231
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 37/46 (80%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 232
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 37/46 (80%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 233
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 37/46 (80%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 234
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 37/46 (80%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 235
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 37/46 (80%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 236
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 37/46 (80%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 237
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 37/46 (80%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 238
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 37/46 (80%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 239
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 37/46 (80%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 37/46 (80%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 37/46 (80%)

Query: 197 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 37/46 (80%)

Query: 198 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 37/46 (80%)

Query: 199 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 37/46 (80%)

Query: 200 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 37/46 (80%)

Query: 201 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 37/46 (80%)

Query: 202 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 37/46 (80%)

Query: 203 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 37/46 (80%)

Query: 204 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 37/46 (80%)

Query: 205 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 37/46 (80%)

Query: 206 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 37/46 (80%)

Query: 207 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 37/46 (80%)

Query: 208 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 23/46 (50%), Positives = 37/46 (80%)

Query: 209 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 31/89 (34%), Positives = 42/89 (47%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KEEE   E+E  EEEE  E    E+  ++ EE  E  EEE  E + E EE + E E+ E 
Sbjct: 398 KEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLES 457

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E E    E   +  ++ E    +   E L
Sbjct: 458 ELERFRREVRDKVRKDREIRARDRRIERL 486

Length = 652

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 43.8 bits (103), Expect = 7e-05
 Identities = 23/80 (28%), Positives = 42/80 (52%)

Query: 188  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
            E++E+  E+  EE  +E EE  E+  + +EE E+ E  E++  +   + + +      E 
Sbjct: 4057 EDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFASAEA 4116

Query: 248  EEEEEEEGEEEEEEEEEEEE 267
            +EE  ++G   E EE  EE+
Sbjct: 4117 DEENTDKGIVGENEELGEED 4136

Length = 4600

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 43.4 bits (102), Expect = 7e-05
 Identities = 16/83 (19%), Positives = 28/83 (33%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
           F +   E+  EE E    E E +     + E        +   +E  E +    ++    
Sbjct: 166 FLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSP 225

Query: 243 EEEEEEEEEEEEGEEEEEEEEEE 265
             ++  E E+E  E E E     
Sbjct: 226 NTQQAVEHEDEPTEPEREGPPFP 248

Length = 413

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 44.0 bits (103), Expect = 7e-05
 Identities = 31/87 (35%), Positives = 62/87 (71%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            K EE+E++  E  ++E EE ++ EE +++E EE+++ EE ++ EEE + + EE ++E EE
Sbjct: 1682 KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            ++++ EE ++ EEE+++    ++EEE+
Sbjct: 1742 DKKKAEEAKKDEEEKKKIAHLKKEEEK 1768

Length = 2084

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 18/77 (23%), Positives = 25/77 (32%)

Query: 186  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
             E +    +E  E  E   E ++E  + EE  E  E    E E   +       E   E 
Sbjct: 932  TESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEV 991

Query: 246  EEEEEEEEEGEEEEEEE 262
            E     E E    +  E
Sbjct: 992  ETVTAVEPEVAPAQVPE 1008

Length = 1068

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 36/84 (42%), Positives = 42/84 (50%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KE+ E  +EE EE E   EE E+   E EE +EE EE+     EE EE  E   EE  E 
Sbjct: 329 KEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAEL 388

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEE 268
           E E  E   E EE + E E  EE 
Sbjct: 389 EAELAEIRNELEELKREIESLEER 412

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 36/89 (40%), Positives = 44/89 (49%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            +E  EE +E+ E  +EE EE E   EE E+   E EE +EE EE+     EE EE  E 
Sbjct: 321 LEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEA 380

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
             EE  E E E  E   E EE + E E  
Sbjct: 381 LREELAELEAELAEIRNELEELKREIESL 409

Length = 1163

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 43.3 bits (102), Expect = 7e-05
 Identities = 30/85 (35%), Positives = 51/85 (60%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K+E++E  E   +EE EEE  + +   E+E  E    +E+E+E+E +   E  + EEE E
Sbjct: 229 KKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETE 288

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEE 269
           E+E+E+ +   +  E+E+E+EE E 
Sbjct: 289 EKEKEKRKRLKKMMEDEDEDEEMEI 313

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 23/34 (67%), Positives = 23/34 (67%)

Query: 234 EEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEE 267
               E EEEEEEEEE  EEEE EEEEEE   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed

 Score = 43.3 bits (103), Expect = 7e-05
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 12/100 (12%)

Query: 187 EEEEEEEEEEEEEEEEEEEEE------------EEEEEEEEEEEEEEEEEEEEEEEEEEE 234
           +EEE EE  +   E    E              +E   +     EE   EE EE E  E+
Sbjct: 289 DEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENPREEAEEAEAPEK 348

Query: 235 EEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEALW 274
            E   ++   E+ EE EEE+ ++ +++ +E+++E  E ++
Sbjct: 349 VEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGVEVIY 388

Length = 390

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 28/59 (47%), Positives = 46/59 (77%)

Query: 203 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEE 261
           E+E E+E  +EEEEEE+EE++EEEE+  ++EEE +EEEE+EE++++ ++ +E   E E 
Sbjct: 28  EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86

Length = 529

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 227 EEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEE 266
              +  EEE        E++++  E+EE +++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 43.4 bits (102), Expect = 7e-05
 Identities = 19/87 (21%), Positives = 48/87 (55%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K++ +++++ +   +++ +E + ++ ++E  EE+   +      + EE E++   E   +
Sbjct: 252 KKKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAK 311

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            E E++E+ E  EEE+ EEE    ++ 
Sbjct: 312 PEIEQDEDSEESEEEKNEEEGGLSKKG 338

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 43.4 bits (102), Expect = 7e-05
 Identities = 18/77 (23%), Positives = 55/77 (71%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
           +E EEE  EEE+++EE+++++++E+E++++++++E++E+E++++    ++   ++  E +
Sbjct: 43  KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNETD 102

Query: 251 EEEEGEEEEEEEEEEEE 267
            E    + ++E ++  E
Sbjct: 103 NEAGFADSDDESDDGSE 119

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           E+ +E  +EE E+E + E++ +E E  EE++ E+   E    +E  E   EE +++ EEE
Sbjct: 193 EDHQELLQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEE 252

Query: 248 EEEEEEEGEEEEEEEEEEEEEEEE 271
            ++E      E E E   +    +
Sbjct: 253 SDDESAWEGFESEYEPINKPVRPK 276

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 43.3 bits (102), Expect = 7e-05
 Identities = 21/87 (24%), Positives = 52/87 (59%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E+    E+  ++ E+  ++ EE++++ EE + ++  E + + E E E++ +EE +++ EE
Sbjct: 95  EQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEE 154

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E + +   E +++  E +++ E E +A
Sbjct: 155 EAKAKAAAEAKKKAAEAKKKAEAEAKA 181

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO

 Score = 42.5 bits (100), Expect = 7e-05
 Identities = 30/72 (41%), Positives = 49/72 (68%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
            +E+EEE+E  +E  + +EEE++ E EE E+E+E  E E E+  E++E+EE  +EEE+EE
Sbjct: 36  ADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEE 95

Query: 250 EEEEEGEEEEEE 261
           E E+  ++E   
Sbjct: 96  EAEDVKQQEVFS 107

Bacillus spores are protected by a protein shell consisting of over 50 different polypeptides, known as the coat. This family of proteins has an important morphogenetic role in coat assembly, it is involved in the assembly of at least 5 different coat proteins including CotB, CotG, CotS, CotSA and CotW. It is likely to act at a late stage of coat assembly. Length = 185

>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated

 Score = 43.3 bits (103), Expect = 8e-05
 Identities = 25/91 (27%), Positives = 39/91 (42%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
           EE     EE      EE  E E  +EE  EE  E  +E  E E   +EE+  ++    E 
Sbjct: 374 EEGFSSLEELAYVPVEELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEG 433

Query: 249 EEEEEEGEEEEEEEEEEEEEEEEALWGYADM 279
            + E   +  E+  +  E+  E+A+    D+
Sbjct: 434 LDRELAFKLAEKGIKTLEDLAEQAVDELIDI 464

Length = 470

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 17/49 (34%), Positives = 31/49 (63%)

Query: 218 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEE 266
            ++EEEE EEE  +E E+E+  E + E +E+++ E    + E+E+ + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 22/99 (22%), Positives = 30/99 (30%), Gaps = 7/99 (7%)

Query: 181 MPFYKEEEEEEEEEEEEEEEEE-------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 233
            P    E + EE    E    E       E+ +   E +    +E  E  E   E ++E 
Sbjct: 897 EPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDET 956

Query: 234 EEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            + EE  E  E    E E           E   E E   
Sbjct: 957 ADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVT 995

Length = 1068

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 31/86 (36%), Positives = 50/86 (58%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
             +E+E+E+E +   E  + EEE EE+E+E+ +  ++  E+E+E+EE E   E   EEEE
Sbjct: 264 GLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEE 323

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
            EE E     ++EEE+EE     +  
Sbjct: 324 SEEPEPPPLPKKEEEKEEVTVSPDGG 349

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 6/94 (6%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------EEEEEEEEEEEEEEEEEEEEE 238
           KEE EEE  + +   E+E  E    +E+E+E+E        + EEE EE+E+E+ +  ++
Sbjct: 241 KEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKK 300

Query: 239 EEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
             E+E+E+EE E   E   EEEE EE E      
Sbjct: 301 MMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPK 334

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 32/89 (35%), Positives = 50/89 (56%)

Query: 182 PFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
           P   +E+E+E+E +   E  + EEE EE+E+E+ +  ++  E+E+E+EE E   E   EE
Sbjct: 262 PTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEE 321

Query: 242 EEEEEEEEEEEEEGEEEEEEEEEEEEEEE 270
           EE EE E     + EEE+EE     +   
Sbjct: 322 EESEEPEPPPLPKKEEEKEEVTVSPDGGR 350

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 30/93 (32%), Positives = 57/93 (61%)

Query: 179 HMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 238
            M  F+K++ +E++E++E  E   +EE EEE  + +   E+E  E    +E+E+E+E + 
Sbjct: 217 IMSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKP 276

Query: 239 EEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
             E  + EEE EE+E+ + +  ++  E+E+E+E
Sbjct: 277 SGERSDSEEETEEKEKEKRKRLKKMMEDEDEDE 309

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 228 EEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEE 267
              +  EEE        E++++  E+E E+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 43.2 bits (103), Expect = 8e-05
 Identities = 31/84 (36%), Positives = 52/84 (61%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KEE  +   E E+E  E   E ++ E+   ++EE  + + E  E+ EEE E++E+E E++
Sbjct: 63  KEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQK 122

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEE 268
           ++E E++EEE EE  EE+ +E E 
Sbjct: 123 QQELEKKEEELEELIEEQLQELER 146

Length = 520

>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO

 Score = 42.1 bits (99), Expect = 8e-05
 Identities = 30/74 (40%), Positives = 51/74 (68%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K+ +E+EEE+E  +E  + +EEE++ E EE E+E+E  E E E+  E++E+EE  +EEE+
Sbjct: 34  KKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEK 93

Query: 245 EEEEEEEEEEGEEE 258
           EEE E+ +++    
Sbjct: 94  EEEAEDVKQQEVFS 107

Bacillus spores are protected by a protein shell consisting of over 50 different polypeptides, known as the coat. This family of proteins has an important morphogenetic role in coat assembly, it is involved in the assembly of at least 5 different coat proteins including CotB, CotG, CotS, CotSA and CotW. It is likely to act at a late stage of coat assembly. Length = 185

>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO

 Score = 42.1 bits (99), Expect = 8e-05
 Identities = 31/82 (37%), Positives = 53/82 (64%)

Query: 198 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEE 257
            +E+EEE+E  +E  + +EEE++ E EE E+E+E  E E E+  E++E+EE  +EEE EE
Sbjct: 36  ADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEE 95

Query: 258 EEEEEEEEEEEEEEALWGYADM 279
           E E+ +++E    +    + +M
Sbjct: 96  EAEDVKQQEVFSFKRKKPFKEM 117

Bacillus spores are protected by a protein shell consisting of over 50 different polypeptides, known as the coat. This family of proteins has an important morphogenetic role in coat assembly, it is involved in the assembly of at least 5 different coat proteins including CotB, CotG, CotS, CotSA and CotW. It is likely to act at a late stage of coat assembly. Length = 185

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 38/89 (42%), Positives = 57/89 (64%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K+   ++ E EEEE EE ++ EE+ E E +EEEE EEE E+++EEEE +E EE+  +E+E
Sbjct: 14  KQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQE 73

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E E+ +     EEE  ++   +EE  E L
Sbjct: 74  EYEKLKSSFVVEEEGTDKLSADEESNELL 102

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein

 Score = 42.9 bits (101), Expect = 8e-05
 Identities = 34/86 (39%), Positives = 45/86 (52%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
            E E  ++     +   E++E   E    E+ EEEE EE EE+EEEE EEE EE E   +
Sbjct: 48  AEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGD 107

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEEA 272
             EE  E  E+ EE EE  +   E+A
Sbjct: 108 TPEELTEASEQLEEHEEGFQAMVEQA 133

Length = 306

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 16/87 (18%), Positives = 42/87 (48%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E+E    +E++++ EE  ++   ++++ EE   +     + + E E +      ++   E
Sbjct: 107 EKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAE 166

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            +++ E E  ++   E +++ E E  A
Sbjct: 167 AKKKAEAEAAKKAAAEAKKKAEAEAAA 193

Length = 387

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 231 EEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
              +  EEE        E++++   +EEE+++ E+   EE  L
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEIVL 302

Length = 584

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 43.4 bits (102), Expect = 9e-05
 Identities = 18/86 (20%), Positives = 46/86 (53%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           ++E  EE+   +      + EE E++   E   + E E++E+ EE EEE+ EEE    ++
Sbjct: 278 DDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKK 337

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
            ++ ++ +  +   ++++ +  ++ +
Sbjct: 338 GKKLKKLKGKKNGLDKDDSDSGDDSD 363

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 43.0 bits (101), Expect = 9e-05
 Identities = 18/86 (20%), Positives = 47/86 (54%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           ++ ++E  EE+   +      + EE E++   E   + E E++E+ EE EEE+ EEE   
Sbjct: 275 DDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGL 334

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
            ++ ++ ++ + ++   ++++ +  +
Sbjct: 335 SKKGKKLKKLKGKKNGLDKDDSDSGD 360

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 43.2 bits (102), Expect = 9e-05
 Identities = 24/78 (30%), Positives = 41/78 (52%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEG 255
           E+ +E  +EE E+E + E++ +E E  EE++ E+   E    +E  E   EE +++ EE 
Sbjct: 193 EDHQELLQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEE 252

Query: 256 EEEEEEEEEEEEEEEEAL 273
            ++E   E  E E E   
Sbjct: 253 SDDESAWEGFESEYEPIN 270

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 21/88 (23%), Positives = 52/88 (59%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K  ++ E+  ++ EE++++ EE + ++  E + + E E E++ +EE +++ EEE + +  
Sbjct: 102 KAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAA 161

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            E +++  E  ++ E E + + E + +A
Sbjct: 162 AEAKKKAAEAKKKAEAEAKAKAEAKAKA 189

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|220102 pfam09073, BUD22, BUD22

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 10/104 (9%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---- 240
           K + +++ ++ +++E +E  ++++EEE E E+E + EE  E++ ++EEEE+ + E+    
Sbjct: 148 KGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQY 207

Query: 241 ------EEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEALWGYAD 278
                   +EEE EE       E+  E E +E + E +      
Sbjct: 208 DGMLVDSSDEEEGEEAPSINYNEDTSESESDESDSEISESRSVS 251

BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal. More recently it has been shown to be involved in ribosome biogenesis. Length = 424

>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO

 Score = 42.1 bits (99), Expect = 9e-05
 Identities = 30/72 (41%), Positives = 50/72 (69%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
            +E+EEE+E  +E  + +EEE++ E EE E+E+E  E E E+  E++E+EE  +EEE+EE
Sbjct: 36  ADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEE 95

Query: 251 EEEEGEEEEEEE 262
           E E+ +++E   
Sbjct: 96  EAEDVKQQEVFS 107

Bacillus spores are protected by a protein shell consisting of over 50 different polypeptides, known as the coat. This family of proteins has an important morphogenetic role in coat assembly, it is involved in the assembly of at least 5 different coat proteins including CotB, CotG, CotS, CotSA and CotW. It is likely to act at a late stage of coat assembly. Length = 185

>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter subunit G; Reviewed

 Score = 42.4 bits (99), Expect = 9e-05
 Identities = 28/73 (38%), Positives = 47/73 (64%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           +E+ E+  +E EE EE  E E  EE+ +E E++EE+E E EE+  EE+ ++ E E  E++
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQD 184

Query: 247 EEEEEEEEGEEEE 259
           E E E ++ + E+
Sbjct: 185 ESETESDDDKTEK 197

Length = 197

>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter subunit G; Reviewed

 Score = 42.4 bits (99), Expect = 9e-05
 Identities = 28/73 (38%), Positives = 47/73 (64%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
           +E+ E+  +E EE EE  E E  EE+ +E E++EE+E E EE+  EE+ ++ E E  E++
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQD 184

Query: 249 EEEEEEGEEEEEE 261
           E E E  +++ E+
Sbjct: 185 ESETESDDDKTEK 197

Length = 197

>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter subunit G; Reviewed

 Score = 42.4 bits (99), Expect = 9e-05
 Identities = 28/73 (38%), Positives = 47/73 (64%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEG 255
           +E+ E+  +E EE EE  E E  EE+ +E E++EE+E E EE+  EE+ ++ E E  E+ 
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQD 184

Query: 256 EEEEEEEEEEEEE 268
           E E E ++++ E+
Sbjct: 185 ESETESDDDKTEK 197

Length = 197

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 23/46 (50%), Positives = 36/46 (78%)

Query: 211 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGE 256
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++E  +
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 38/87 (43%), Positives = 58/87 (66%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +++ E EEEE EE ++ EE+ E E +EEEE EEE E+++EEEE +E EE+  +E+EE E+
Sbjct: 18  RQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEK 77

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            +     EEEG ++   +EE  E  E+
Sbjct: 78  LKSSFVVEEEGTDKLSADEESNELLED 104

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 25/87 (28%), Positives = 57/87 (65%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
             +E + E  +EEE+E+E+ +EE+++++E+ +EE ++ + +EE +E+   +E+E+E+E++
Sbjct: 94  PAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKK 153

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            EE  + EEE + E    +   ++  +
Sbjct: 154 VEEPRDREEEKKRERVRAKSRPKKPPK 180

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K      E  E++   EEE  +     E  E+ +EEE +++E E+  E +++++EEEE E
Sbjct: 46  KPASMGLEAGEKKGYGEEEVVDGIPGLELLEKWKEEERKKKEAEQGLESDDDDDEEEEWE 105

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            EE+E+ ++EGE  + E ++E E  + 
Sbjct: 106 VEEDEDSDDEGEWIDVESDKEIESSDS 132

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 22/80 (27%), Positives = 41/80 (51%)

Query: 186  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            E++E+  E+  EE  +E EE  E+  + +EE E+ E  E++  +   + + +      E 
Sbjct: 4057 EDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFASAEA 4116

Query: 246  EEEEEEEEEGEEEEEEEEEE 265
            +EE  ++    E EE  EE+
Sbjct: 4117 DEENTDKGIVGENEELGEED 4136

Length = 4600

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 22/80 (27%), Positives = 41/80 (51%)

Query: 191  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
            E++E+  E+  EE  +E EE  E+  + +EE E+ E  E++  +   + + +      E 
Sbjct: 4057 EDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFASAEA 4116

Query: 251  EEEEGEEEEEEEEEEEEEEE 270
            +EE  ++    E EE  EE+
Sbjct: 4117 DEENTDKGIVGENEELGEED 4136

Length = 4600

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 16/88 (18%), Positives = 41/88 (46%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KE    +E++++ EE  ++   ++++ EE   +     + + E E +      ++   E 
Sbjct: 108 KERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEA 167

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           +++ E E  +    E +++ E E   +A
Sbjct: 168 KKKAEAEAAKKAAAEAKKKAEAEAAAKA 195

Length = 387

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 17/51 (33%), Positives = 32/51 (62%)

Query: 222 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            ++EEEE EEE  +E E+E+  E + E +E+++ E  + + E+E+ + E  
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPK 144

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 17/49 (34%), Positives = 32/49 (65%)

Query: 219 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEE 267
            ++EEEE EEE  +E E+E+  E + E +E+++ E  + + E+E+ + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 19/87 (21%), Positives = 27/87 (31%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E    E       E+ +   E +    +E  E  E   E ++E  + EE  E  E    E
Sbjct: 913 ETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAE 972

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            E   +       E   E E     E 
Sbjct: 973 PEVVAQPAAPVVAEVAAEVETVTAVEP 999

Length = 1068

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 17/77 (22%), Positives = 24/77 (31%)

Query: 187  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
             E +    +E  E  E   E ++E  + EE  E  E    E E   +       E   E 
Sbjct: 932  TESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEV 991

Query: 247  EEEEEEEEGEEEEEEEE 263
            E     E      +  E
Sbjct: 992  ETVTAVEPEVAPAQVPE 1008

Length = 1068

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 21/100 (21%), Positives = 28/100 (28%), Gaps = 13/100 (13%)

Query: 186  EEEEEEEEEEEEEEEEEE-------------EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 232
              E + EE    E    E              E +    +E  E  E   E ++E  + E
Sbjct: 901  VAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIE 960

Query: 233  EEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            E  E  E    E E   +       E   E E     E  
Sbjct: 961  EAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPE 1000

Length = 1068

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 35/86 (40%), Positives = 43/86 (50%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           + +E+ E  +EE EE E   EE E+   E EE +EE EE+     EE EE  E   EE  
Sbjct: 327 ELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELA 386

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEE 270
           E E E  E   E EE + E E  EE 
Sbjct: 387 ELEAELAEIRNELEELKREIESLEER 412

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 41/88 (46%), Positives = 48/88 (54%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           +EE EE E E     E  EE E E EE EE  EE +E+ E  +EE EE E   EE E+  
Sbjct: 294 KEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLL 353

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            E EE +EE EE+     EE EE  EAL
Sbjct: 354 AELEEAKEELEEKLSALLEELEELFEAL 381

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 37/89 (41%), Positives = 42/89 (47%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            E  +EE EE E   EE E+   E EE +EE EE+     EE EE  E   EE  E E E
Sbjct: 332 IEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAE 391

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
             E   E EE + E E  EE  E   E L
Sbjct: 392 LAEIRNELEELKREIESLEERLERLSERL 420

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 36/88 (40%), Positives = 44/88 (50%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +E +E+ E  +EE EE E   EE E+   E EE +EE EE+     EE EE  E   EE 
Sbjct: 326 EELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREEL 385

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            E E E  E   E EE + E E  EE  
Sbjct: 386 AELEAELAEIRNELEELKREIESLEERL 413

Length = 1163

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 31/88 (35%), Positives = 54/88 (61%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KE++E++E  E   +EE EEE  + +   E+E  E    +E+E+E+E +   E  + EEE
Sbjct: 227 KEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEE 286

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            EE+E+E+ +  ++  E+E+E+EE E  
Sbjct: 287 TEEKEKEKRKRLKKMMEDEDEDEEMEIV 314

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 30/87 (34%), Positives = 54/87 (62%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K +E++E++E  E   +EE EEE  + +   E+E  E    +E+E+E+E +   E  + E
Sbjct: 225 KTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSE 284

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           EE EE+E+E+ +  ++  E+E+E+EE 
Sbjct: 285 EETEEKEKEKRKRLKKMMEDEDEDEEM 311

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 31/85 (36%), Positives = 49/85 (57%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           +E+E+E+E +   E  + EEE EE+E+E+ +  ++  E+E+E+EE E   E   EEEE E
Sbjct: 266 DEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESE 325

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEE 271
           E E      +EEE+EE     +   
Sbjct: 326 EPEPPPLPKKEEEKEEVTVSPDGGR 350

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 28/59 (47%), Positives = 46/59 (77%)

Query: 199 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEE 257
           E+E E+E  +EEEEEE+EE++EEEE+  ++EEE +EEEE+EE++++ ++ +E   E E 
Sbjct: 28  EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86

Length = 529

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 217 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGE 256
              +  EEE        E++++  E+EEE+++ E+    E
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 226 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEE 265
              +  EEE        E++++  E+EEE ++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 230 EEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEE 269
              +  EEE        E++++  E EEE+++ E+   EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299

Length = 584

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 18/85 (21%), Positives = 46/85 (54%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           ++E  EE+   +      + EE E++   E   + E E++E+ EE EEE+ EEE    ++
Sbjct: 278 DDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKK 337

Query: 248 EEEEEEEGEEEEEEEEEEEEEEEEA 272
            ++ ++   ++   ++++ +  +++
Sbjct: 338 GKKLKKLKGKKNGLDKDDSDSGDDS 362

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 19/87 (21%), Positives = 52/87 (59%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           ++  ++ E+  ++ EE++++ EE + ++  E + + E E E++ +EE +++ EEE + + 
Sbjct: 101 EKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKA 160

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
             E +++  E +++ E E + + E + 
Sbjct: 161 AAEAKKKAAEAKKKAEAEAKAKAEAKA 187

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 20/88 (22%), Positives = 52/88 (59%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +++   E+  ++E E+    E+  ++ E+  ++ EE++++ EE + ++  E + + E E 
Sbjct: 81  EKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEA 140

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E++ +EE ++  EEE + +   E +++A
Sbjct: 141 EKKAKEEAKKQAEEEAKAKAAAEAKKKA 168

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 22/88 (25%), Positives = 53/88 (60%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            E+  ++ EE++++ EE + ++  E + + E E E++ +EE +++ EEE + +   E ++
Sbjct: 107 AEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKK 166

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           +  E +++ E E + + E + + + EEA
Sbjct: 167 KAAEAKKKAEAEAKAKAEAKAKAKAEEA 194

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 17/79 (21%), Positives = 49/79 (62%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
           EE +   +   ++ +E  +E  ++ ++  ++  E ++E +  EE E + +EE+ ++EE E
Sbjct: 354 EEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENE 413

Query: 251 EEEEGEEEEEEEEEEEEEE 269
           ++++ + +E++E+ +++E 
Sbjct: 414 KKQKEQADEDKEKRQKDER 432

Length = 434

>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 27/66 (40%), Positives = 36/66 (54%)

Query: 199 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEE 258
               EEE  EEE   EE   EE+EE   E E  ++EE EEE+ EEE + E+  +   E  
Sbjct: 464 PLLPEEELAEEEAAAEEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRLRELA 523

Query: 259 EEEEEE 264
           +E+ EE
Sbjct: 524 KEDPEE 529

Length = 542

>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 26/66 (39%), Positives = 35/66 (53%)

Query: 198 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEE 257
               EEE  EEE   EE   EE+EE   E E  ++EE EEE+ EEE + E+  +      
Sbjct: 464 PLLPEEELAEEEAAAEEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRLRELA 523

Query: 258 EEEEEE 263
           +E+ EE
Sbjct: 524 KEDPEE 529

Length = 542

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 42/83 (50%), Positives = 46/83 (55%)

Query: 187  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
            EE  EE  EE +EE  EE EE  EE  EE  EE  EE  EE EE  EE  EE  EE  EE
Sbjct: 1054 EENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEE 1113

Query: 247  EEEEEEEEGEEEEEEEEEEEEEE 269
              EE  EE ++E  EE  EE +E
Sbjct: 1114 NAEENAEEYDDENPEEHNEEYDE 1136

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 46/88 (52%), Positives = 49/88 (55%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +E EE  EE +EE  EE EE  EE  EE  EE  EE +EE  EE EE  EE  EE  EE 
Sbjct: 1028 EEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEEN 1087

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
             EE  EE EE  EE  EE  EE  EE A
Sbjct: 1088 VEENVEEIEENVEENVEENAEENAEENA 1115

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 45/103 (43%), Positives = 53/103 (51%)

Query: 169  DNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 228
            D     +V  ++  + +E  EE EE  EE  EE  EE  EE +EE  EE EE  EE  EE
Sbjct: 1023 DEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEE 1082

Query: 229  EEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
              EE  EE  EE EE  EE  EE  E   EE  EE  EE ++E
Sbjct: 1083 NVEENVEENVEEIEENVEENVEENAEENAEENAEENAEEYDDE 1125

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 42/83 (50%), Positives = 45/83 (54%)

Query: 186  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            EE  EE  EE +EE  EE EE  EE  EE  EE  EE  EE EE  EE  EE  EE  EE
Sbjct: 1054 EENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEE 1113

Query: 246  EEEEEEEEEGEEEEEEEEEEEEE 268
              EE  EE  +E  EE  EE +E
Sbjct: 1114 NAEENAEEYDDENPEEHNEEYDE 1136

Length = 1136

>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 30/72 (41%), Positives = 50/72 (69%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253
            +E+EEE+E  +E  + +EEE++ E EE E+E+E  E E E+  E++E+EE  +EEE+EE
Sbjct: 36  ADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEE 95

Query: 254 EGEEEEEEEEEE 265
           E E+ +++E   
Sbjct: 96  EAEDVKQQEVFS 107

Bacillus spores are protected by a protein shell consisting of over 50 different polypeptides, known as the coat. This family of proteins has an important morphogenetic role in coat assembly, it is involved in the assembly of at least 5 different coat proteins including CotB, CotG, CotS, CotSA and CotW. It is likely to act at a late stage of coat assembly. Length = 185

>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 30/72 (41%), Positives = 49/72 (68%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
            +E+EEE+E  +E  + +EEE++ E EE E+E+E  E E E+  E++E+EE  +EEE+EE
Sbjct: 36  ADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEE 95

Query: 252 EEEGEEEEEEEE 263
           E E  +++E   
Sbjct: 96  EAEDVKQQEVFS 107

Bacillus spores are protected by a protein shell consisting of over 50 different polypeptides, known as the coat. This family of proteins has an important morphogenetic role in coat assembly, it is involved in the assembly of at least 5 different coat proteins including CotB, CotG, CotS, CotSA and CotW. It is likely to act at a late stage of coat assembly. Length = 185

>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 30/70 (42%), Positives = 48/70 (68%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            KEEE+E  +E  + +EEE++ E EE E+E+E  E E E+  E++E+EE  +EEE+EEE 
Sbjct: 38  EKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEA 97

Query: 244 EEEEEEEEEE 253
           E+ +++E   
Sbjct: 98  EDVKQQEVFS 107

Bacillus spores are protected by a protein shell consisting of over 50 different polypeptides, known as the coat. This family of proteins has an important morphogenetic role in coat assembly, it is involved in the assembly of at least 5 different coat proteins including CotB, CotG, CotS, CotSA and CotW. It is likely to act at a late stage of coat assembly. Length = 185

>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 31/82 (37%), Positives = 54/82 (65%)

Query: 179 HMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 238
           +M   +  ++ +E+EEE+E  +E  + +EEE++ E EE E+E+E  E E E+  E++E+E
Sbjct: 26  NMQKTFIIKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKE 85

Query: 239 EEEEEEEEEEEEEEEEGEEEEE 260
           E  +EEE+EEE E+ + +E   
Sbjct: 86  EIAQEEEKEEEAEDVKQQEVFS 107

Bacillus spores are protected by a protein shell consisting of over 50 different polypeptides, known as the coat. This family of proteins has an important morphogenetic role in coat assembly, it is involved in the assembly of at least 5 different coat proteins including CotB, CotG, CotS, CotSA and CotW. It is likely to act at a late stage of coat assembly. Length = 185

>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter subunit G; Reviewed

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 28/73 (38%), Positives = 47/73 (64%)

Query: 197 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGE 256
           +E+ E+  +E EE EE  E E  EE+ +E E++EE+E E EE+  EE+ ++ E E  E +
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQD 184

Query: 257 EEEEEEEEEEEEE 269
           E E E ++++ E+
Sbjct: 185 ESETESDDDKTEK 197

Length = 197

>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM protein

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 20/93 (21%), Positives = 33/93 (35%)

Query: 181 MPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240
           +    E+ ++E ++    +   +EE +E  E                +   E     E  
Sbjct: 81  LADSFEKSDKESQDYSSSDSGFDEEPDEPAETAGSLRPIRSSAAAYRDINRELGSFYEYP 140

Query: 241 EEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           + +EE+E   E EE E     E     E EE L
Sbjct: 141 KTDEEKELLREVEELESRLATEPSPAPELEEQL 173

Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage [Cellular processes, DNA transformation]. Length = 410

>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 21/91 (23%), Positives = 41/91 (45%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
            E+   EE E ++   +      E++ ++    E+ E E    EE E EEE E+ E+E +
Sbjct: 338 NEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDEND 397

Query: 248 EEEEEEEGEEEEEEEEEEEEEEEEALWGYAD 278
             +   + +E E      +E+    + G+ +
Sbjct: 398 HSKRICDDDELENHFRAADEKNSHLVVGFRN 428

Length = 776

>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 21/90 (23%), Positives = 40/90 (44%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
           ++    E+   EE E ++   +      E++ ++    E+ E E    EE E EEE E+ 
Sbjct: 333 WRNLNNEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDY 392

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E+E +  +    ++E E      +E+   L
Sbjct: 393 EDENDHSKRICDDDELENHFRAADEKNSHL 422

Length = 776

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 23/45 (51%), Positives = 35/45 (77%)

Query: 227 EEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            +EE+ EE  E+ EEEEEE++  E E+E EE+E+EEEEE+++E +
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGD 318

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 22/46 (47%), Positives = 36/46 (78%)

Query: 225 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEE 270
            +EE+ EE  E+ EEEEEE++  E E+E+E +E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 28/87 (32%), Positives = 41/87 (47%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
            + +EEE   E+E  EEEE  E    E+  ++ EE  E  EEE  E + E EE + E E+
Sbjct: 395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEK 454

Query: 248 EEEEEEEGEEEEEEEEEEEEEEEEALW 274
            E E E    E  ++  ++ E      
Sbjct: 455 LESELERFRREVRDKVRKDREIRARDR 481

Length = 652

>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 22/84 (26%), Positives = 48/84 (57%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E++ ++ E +  E++  +   ++E + +  ++E+ + E  +E ++EE  +E     + E+
Sbjct: 702 EDDSDDSELDFAEDDFSDSTSDDEPKLDAIDDEDAKSEGSQESDQEEGLDEIFYSFDGEQ 761

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEE 269
           +  +   E  EE+E  EEE+EEEE
Sbjct: 762 DNSDSFAESSEEDESSEEEKEEEE 785

Length = 821

>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 4/99 (4%)

Query: 179 HMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 238
           H+ PF   +  +        EE +   EE+     E+   E    EE+++++EE + ++E
Sbjct: 446 HLSPFASVDSYDPRASLMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKE 505

Query: 239 EEEEEE----EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            E E +     E  E +++  + + ++ + +EEEEE+ L
Sbjct: 506 LELEAQGIKYSETSEADKDVNKSKNKKRKVDEEEEEKKL 544

Length = 591

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 21/45 (46%), Positives = 28/45 (62%)

Query: 211 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEG 255
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE   G
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEAAAG 324

Length = 330

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 20/42 (47%), Positives = 30/42 (71%)

Query: 215 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGE 256
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EEGE
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 7/100 (7%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------ 239
           E   EE E  +E EE+E E  + E EE E +  E  E+ E +E +E+ E   E+      
Sbjct: 248 EAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTETPGEDARPATP 307

Query: 240 -EEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEALWGYAD 278
             E  EE + +    E +E    EE  +E E + L  + D
Sbjct: 308 FTELMEEVDYKVFTREFDEIVLAEELCDEAELDRLRAFLD 347

Length = 620

>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 22/68 (32%), Positives = 38/68 (55%)

Query: 213 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E +   ++  E EEE+E++ EE +++E+E E  E+ E E E   E+ EE+E+E++ E   
Sbjct: 636 ENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANE 695

Query: 273 LWGYADMG 280
                D  
Sbjct: 696 GVVPIDKA 703

This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localised exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units. Length = 784

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 8/89 (8%), Positives = 63/89 (70%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +   +++ ++E +  ++ E++   +++++    ++ +   + +++++++++++ ++++ 
Sbjct: 88  AKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDI 147

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           ++++++E+++ ++++++ ++E+EE++EA 
Sbjct: 148 DDDDDDEDDDEDDDDDDVDDEDEEKKEAK 176

Length = 509

>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 20/89 (22%), Positives = 47/89 (52%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
               +   E +E+++EE+E + +  EE+    + ++ +   + +  +++ ++++ E+E  
Sbjct: 86  STNLDASNEGDEDDDEEDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDETA 145

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
               E E+ + E  EE+E EEEE+  E  
Sbjct: 146 ALLRELEKIKKERAEEKEREEEEKAAEEE 174

This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing. Length = 241

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 17/49 (34%), Positives = 32/49 (65%)

Query: 215 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEE 263
            ++EEEE EEE  +E E+E+  E + E +E+++ E  + + E+E+ + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 17/49 (34%), Positives = 31/49 (63%)

Query: 213 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEE 261
            ++EEEE EEE  +E E+E+  E + E +E+++ E  + + E E+ + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 16/49 (32%), Positives = 31/49 (63%)

Query: 214 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEE 262
            ++EEEE EEE  +E E+E+  E + E +E+++ E  + +  +E+ + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 16/49 (32%), Positives = 31/49 (63%)

Query: 212 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEE 260
            ++EEEE EEE  +E E+E+  E + E +E+++ E  + + E+ + + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 17/76 (22%), Positives = 25/76 (32%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            + +    +E  E  E   E ++E  + EE  E  E    E E   +       E   E E
Sbjct: 933  ESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVE 992

Query: 245  EEEEEEEEEEGEEEEE 260
                 E E    +  E
Sbjct: 993  TVTAVEPEVAPAQVPE 1008

Length = 1068

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 18/73 (24%), Positives = 24/73 (32%)

Query: 186  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            +E  E  E   E ++E  + EE  E  E    E E   +       E   E E     E 
Sbjct: 940  QEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEP 999

Query: 246  EEEEEEEEEGEEE 258
            E    +  E   E
Sbjct: 1000 EVAPAQVPEATVE 1012

Length = 1068

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 37/90 (41%), Positives = 42/90 (46%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            KEE EE E   EE E+   E EE +EE EE+     EE EE  E   EE  E E E  E
Sbjct: 335 LKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAE 394

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
              E EE + E E  EE  E   E  E+  
Sbjct: 395 IRNELEELKREIESLEERLERLSERLEDLK 424

Length = 1163

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 31/89 (34%), Positives = 55/89 (61%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
           F K+ +E++E++E  E   +EE EEE  + +   E+E  E    +E+E+E+E +   E  
Sbjct: 222 FKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERS 281

Query: 243 EEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           + EEE EE+E+E  +  ++  E+E+E+EE
Sbjct: 282 DSEEETEEKEKEKRKRLKKMMEDEDEDEE 310

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 17/85 (20%), Positives = 45/85 (52%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
           Y  +      + EE E++   E   + E E++E+ EE EEE+ EEE    ++ ++ ++ +
Sbjct: 286 YISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLK 345

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEE 268
            ++   ++++    ++ ++ + + E
Sbjct: 346 GKKNGLDKDDSDSGDDSDDSDIDGE 370

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 20/87 (22%), Positives = 49/87 (56%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K +++ +++++ +   +++ +E + ++ ++E  EE+   +      + EE E++   E  
Sbjct: 250 KNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIP 309

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            + E E++E+ EE EEE+ EEE    +
Sbjct: 310 AKPEIEQDEDSEESEEEKNEEEGGLSK 336

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 18/87 (20%), Positives = 48/87 (55%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           + + ++ ++E  EE+   +      + EE E++   E   + E E++E+ EE EEE+ EE
Sbjct: 271 EYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEE 330

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           E    ++ ++ ++ + ++   ++++ +
Sbjct: 331 EGGLSKKGKKLKKLKGKKNGLDKDDSD 357

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 20/88 (22%), Positives = 50/88 (56%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           + EE E++   E+  ++E E+    E+  ++ E+  ++ EE++++ EE + ++  E + +
Sbjct: 76  QAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAK 135

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            E E E++ + E +++ EEE + +    
Sbjct: 136 AEAEAEKKAKEEAKKQAEEEAKAKAAAE 163

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 20/86 (23%), Positives = 50/86 (58%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
             E+  ++ E+  ++ EE++++ EE + ++  E + + E E E++ +EE +++ EEE + 
Sbjct: 99  AAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKA 158

Query: 248 EEEEEEEGEEEEEEEEEEEEEEEEAL 273
           +   E + +  E +++ E E + +A 
Sbjct: 159 KAAAEAKKKAAEAKKKAEAEAKAKAE 184

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 16/77 (20%), Positives = 47/77 (61%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEG 255
           EE +   +   ++ +E  +E  ++ ++  ++  E ++E +  EE E + +EE+ ++EE  
Sbjct: 354 EEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENE 413

Query: 256 EEEEEEEEEEEEEEEEA 272
           ++++E+ +E++E+ ++ 
Sbjct: 414 KKQKEQADEDKEKRQKD 430

Length = 434

>gnl|CDD|220102 pfam09073, BUD22, BUD22

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 26/90 (28%), Positives = 45/90 (50%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
             +++EEE E E+E + EE  E++ ++EEEE+ + E+  + +    +  +EEE EE    
Sbjct: 167 SDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDEEEGEEAPSI 226

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
              E+  E E  E + E  E     + E  
Sbjct: 227 NYNEDTSESESDESDSEISESRSVSDSEES 256

BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal. More recently it has been shown to be involved in ribosome biogenesis. Length = 424

>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 27/66 (40%), Positives = 36/66 (54%)

Query: 201 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEE 260
               EEE  EEE   EE   EE+EE   E E  ++EE EEE+ EEE + E+  +   E  
Sbjct: 464 PLLPEEELAEEEAAAEEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRLRELA 523

Query: 261 EEEEEE 266
           +E+ EE
Sbjct: 524 KEDPEE 529

Length = 542

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 45/86 (52%), Positives = 48/86 (55%)

Query: 186  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            EE  EE  EE  EE  EE  EE  EE  EE  EE +EE  EE EE  EE +EE  EE EE
Sbjct: 988  EENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEE 1047

Query: 246  EEEEEEEEEGEEEEEEEEEEEEEEEE 271
              EE  EE  EE  EE +EE  EE E
Sbjct: 1048 NAEENVEENIEENIEEYDEENVEEIE 1073

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 44/84 (52%), Positives = 46/84 (54%)

Query: 186  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE +EE  EE E
Sbjct: 972  EENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVE 1031

Query: 246  EEEEEEEEEGEEEEEEEEEEEEEE 269
            E  EE +EE  EE EE  EE  EE
Sbjct: 1032 ENVEEYDEENVEEIEENAEENVEE 1055

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 44/84 (52%), Positives = 46/84 (54%)

Query: 186  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE +EE  
Sbjct: 968  EENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENV 1027

Query: 246  EEEEEEEEEGEEEEEEEEEEEEEE 269
            EE EE  EE +EE  EE EE  EE
Sbjct: 1028 EEVEENVEEYDEENVEEIEENAEE 1051

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 45/86 (52%), Positives = 48/86 (55%)

Query: 186  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            EE  EE  EE  EE  EE  EE  EE  EE +EE  EE EE  EE +EE  EE EE  EE
Sbjct: 992  EENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEE 1051

Query: 246  EEEEEEEEEGEEEEEEEEEEEEEEEE 271
              EE  EE  EE +EE  EE EE  E
Sbjct: 1052 NVEENIEENIEEYDEENVEEIEENIE 1077

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 45/86 (52%), Positives = 48/86 (55%)

Query: 186  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            EE  EE  EE  EE  EE  EE +EE  EE EE  EE +EE  EE EE  EE  EE  EE
Sbjct: 1000 EENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEE 1059

Query: 246  EEEEEEEEEGEEEEEEEEEEEEEEEE 271
              EE +EE  EE EE  EE  EE  E
Sbjct: 1060 NIEEYDEENVEEIEENIEENIEENVE 1085

Length = 1136

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 31/87 (35%), Positives = 53/87 (60%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KE E  ++E   E +EE  +   E E+E  E   E ++ E+   ++EE  + + E  E+ 
Sbjct: 49  KEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKR 108

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           EEE E++E+E E++++E E++EEE EE
Sbjct: 109 EEELEKKEKELEQKQQELEKKEEELEE 135

Length = 520

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 15/71 (21%), Positives = 54/71 (76%)

Query: 203 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEE 262
            E  E +++++E  EE E+ ++E EE+++ + ++++ +++++++++++++++ ++ E+++
Sbjct: 55  AEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKD 114

Query: 263 EEEEEEEEEAL 273
           E+E E++ E L
Sbjct: 115 EKEAEDKLEDL 125

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 29/72 (40%), Positives = 49/72 (68%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254
            +E+EEE+E  +E  + +EEE++ E EE E+E+E  E E E+  E++E+EE  +EEE+EE
Sbjct: 36  ADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEE 95

Query: 255 GEEEEEEEEEEE 266
             E+ +++E   
Sbjct: 96  EAEDVKQQEVFS 107

Bacillus spores are protected by a protein shell consisting of over 50 different polypeptides, known as the coat. This family of proteins has an important morphogenetic role in coat assembly, it is involved in the assembly of at least 5 different coat proteins including CotB, CotG, CotS, CotSA and CotW. It is likely to act at a late stage of coat assembly. Length = 185

>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 29/72 (40%), Positives = 49/72 (68%)

Query: 197 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGE 256
            +E+EEE+E  +E  + +EEE++ E EE E+E+E  E E E+  E++E+EE  +EEE+ E
Sbjct: 36  ADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEE 95

Query: 257 EEEEEEEEEEEE 268
           E E+ +++E   
Sbjct: 96  EAEDVKQQEVFS 107

Bacillus spores are protected by a protein shell consisting of over 50 different polypeptides, known as the coat. This family of proteins has an important morphogenetic role in coat assembly, it is involved in the assembly of at least 5 different coat proteins including CotB, CotG, CotS, CotSA and CotW. It is likely to act at a late stage of coat assembly. Length = 185

>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 29/72 (40%), Positives = 49/72 (68%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
            +E+EEE+E  +E  + +EEE++ E EE E+E+E  E E E+  E++E+EE  +EEE+EE
Sbjct: 36  ADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEE 95

Query: 253 EEGEEEEEEEEE 264
           E  + +++E   
Sbjct: 96  EAEDVKQQEVFS 107

Bacillus spores are protected by a protein shell consisting of over 50 different polypeptides, known as the coat. This family of proteins has an important morphogenetic role in coat assembly, it is involved in the assembly of at least 5 different coat proteins including CotB, CotG, CotS, CotSA and CotW. It is likely to act at a late stage of coat assembly. Length = 185

>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 24/73 (32%), Positives = 36/73 (49%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
             E + E   +E+   E     +EE ++   E  + EE++    E    + E  EEEEEE
Sbjct: 109 SGESDLENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEE 168

Query: 248 EEEEEEEGEEEEE 260
             EEEEE +E E+
Sbjct: 169 IAEEEEEVKEPED 181

Members of this family contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of pfam00520 and, less often, one copy of pfam00612. Length = 230

>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter subunit G; Reviewed

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 27/71 (38%), Positives = 46/71 (64%)

Query: 202 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEE 261
           +E+ E+  +E EE EE  E E  EE+ +E E++EE+E E EE+  EE+ ++ E E  E++
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQD 184

Query: 262 EEEEEEEEEEA 272
           E E E ++++ 
Sbjct: 185 ESETESDDDKT 195

Length = 197

>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter subunit G; Reviewed

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 28/73 (38%), Positives = 47/73 (64%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           +E+ E+  +E EE EE  E E  EE+ +E E++EE+E E EE+  EE+ ++ E E  E++
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQD 184

Query: 248 EEEEEEEGEEEEE 260
           E E E + ++ E+
Sbjct: 185 ESETESDDDKTEK 197

Length = 197

>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter subunit G; Reviewed

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 30/93 (32%), Positives = 50/93 (53%)

Query: 160 DEANSCNVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 219
           D+  S    D      ++       K  +E EE EE  E E  EE+ +E E++EE+E E 
Sbjct: 105 DQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQERER 164

Query: 220 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
           EE+  EE+ ++ E E  E++E E E ++++ E+
Sbjct: 165 EEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197

Length = 197

>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter subunit G; Reviewed

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 27/73 (36%), Positives = 47/73 (64%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
           +E+ E+  +E EE EE  E E  EE+ +E E++EE+E E EE+  EE+ ++ E E  E++
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQD 184

Query: 251 EEEEGEEEEEEEE 263
           E E   ++++ E+
Sbjct: 185 ESETESDDDKTEK 197

Length = 197

>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter subunit G; Reviewed

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 27/73 (36%), Positives = 47/73 (64%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
           +E+ E+  +E EE EE  E E  EE+ +E E++EE+E E EE+  EE+ ++ E E  E++
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQD 184

Query: 253 EEGEEEEEEEEEE 265
           E   E ++++ E+
Sbjct: 185 ESETESDDDKTEK 197

Length = 197

>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter subunit G; Reviewed

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 27/73 (36%), Positives = 47/73 (64%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254
           +E+ E+  +E EE EE  E E  EE+ +E E++EE+E E EE+  EE+ ++ E E  E++
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQD 184

Query: 255 GEEEEEEEEEEEE 267
             E E ++++ E+
Sbjct: 185 ESETESDDDKTEK 197

Length = 197

>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter subunit G; Reviewed

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 27/73 (36%), Positives = 47/73 (64%)

Query: 198 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEE 257
           +E+ E+  +E EE EE  E E  EE+ +E E++EE+E E EE+  EE+ ++ E E   ++
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQD 184

Query: 258 EEEEEEEEEEEEE 270
           E E E ++++ E+
Sbjct: 185 ESETESDDDKTEK 197

Length = 197

>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 20/81 (24%), Positives = 37/81 (45%)

Query: 200 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEE 259
            E+   EE E ++   +      E++ ++    E+ E E    EE E EEE E+  +E +
Sbjct: 338 NEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDEND 397

Query: 260 EEEEEEEEEEEEALWGYADMG 280
             +   +++E E  +  AD  
Sbjct: 398 HSKRICDDDELENHFRAADEK 418

Length = 776

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 22/46 (47%), Positives = 36/46 (78%)

Query: 217 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEE 262
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEE +++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 22/46 (47%), Positives = 36/46 (78%)

Query: 220 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEE 265
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+E EEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 23/46 (50%), Positives = 36/46 (78%)

Query: 222 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEE 267
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 23/46 (50%), Positives = 36/46 (78%)

Query: 215 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEE 260
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+ +E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 22/46 (47%), Positives = 36/46 (78%)

Query: 218 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEE 263
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEE E+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 22/46 (47%), Positives = 36/46 (78%)

Query: 221 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEE 266
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+ EEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 23/46 (50%), Positives = 36/46 (78%)

Query: 224 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEE 269
            +EE+ EE  E+ EEEEEE++  E E+E+EE E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 22/46 (47%), Positives = 36/46 (78%)

Query: 219 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEE 264
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EE EE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 25/87 (28%), Positives = 58/87 (66%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +E + E  +EEE+E+E+ +EE+++++E+ +EE ++ + +EE +E+   +E+E+E+E++ 
Sbjct: 95  AKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKV 154

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           EE  + EEE+  E    +   ++  ++
Sbjct: 155 EEPRDREEEKKRERVRAKSRPKKPPKK 181

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 213 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGE 256
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE   
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEAAA 323

Length = 330

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query: 182 PFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 227
           PF   ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 27  PFASAQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|235285 PRK04335, PRK04335, cell division protein ZipA; Provisional

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 29/84 (34%), Positives = 44/84 (52%)

Query: 182 PFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
            F  E EEEE++ E+EE     + + + + E+ E + EE  +EE  EE E    +    E
Sbjct: 93  LFGGELEEEEDKFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEPEPVAAKVPMAE 152

Query: 242 EEEEEEEEEEEEEGEEEEEEEEEE 265
            + EEE E E +E EE + E E +
Sbjct: 153 VQPEEETEIEVDEPEEPKPEPELD 176

Length = 313

>gnl|CDD|235285 PRK04335, PRK04335, cell division protein ZipA; Provisional

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 28/82 (34%), Positives = 43/82 (52%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
             E EEEE++ E+EE     + + + + E+ E + EE  +EE  EE E    +    E +
Sbjct: 95  GGELEEEEDKFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEPEPVAAKVPMAEVQ 154

Query: 249 EEEEEEGEEEEEEEEEEEEEEE 270
            EEE E E +E EE + E E +
Sbjct: 155 PEEETEIEVDEPEEPKPEPELD 176

Length = 313

>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 30/80 (37%), Positives = 50/80 (62%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253
            E+E ++ + E  EE+  +E E +EE++ +EE+ E EE E+EE  E+ EE  E + EE +
Sbjct: 1   MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELK 60

Query: 254 EGEEEEEEEEEEEEEEEEAL 273
           +   + +EE ++ E E EAL
Sbjct: 61  DENNKLKEENKKLENELEAL 80

Length = 211

>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 29/79 (36%), Positives = 49/79 (62%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            E+E ++ + E  EE+  +E E +EE++ +EE+ E EE E+EE  E+ EE  E + EE +
Sbjct: 1   MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELK 60

Query: 246 EEEEEEEEEGEEEEEEEEE 264
           +E  + +EE ++ E E E 
Sbjct: 61  DENNKLKEENKKLENELEA 79

Length = 211

>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 29/79 (36%), Positives = 49/79 (62%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
            E+E ++ + E  EE+  +E E +EE++ +EE+ E EE E+EE  E+ EE  E + EE +
Sbjct: 1   MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELK 60

Query: 253 EEGEEEEEEEEEEEEEEEE 271
           +E  + +EE ++ E E E 
Sbjct: 61  DENNKLKEENKKLENELEA 79

Length = 211

>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 30/84 (35%), Positives = 52/84 (61%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
            E+E ++ + E  EE+  +E E +EE++ +EE+ E EE E+EE  E+ EE  E + EE +
Sbjct: 1   MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELK 60

Query: 250 EEEEEGEEEEEEEEEEEEEEEEAL 273
           +E  + +EE ++ E E E  ++ L
Sbjct: 61  DENNKLKEENKKLENELEALKDRL 84

Length = 211

>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2)

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 22/88 (25%), Positives = 40/88 (45%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
              E +   + +  +E EE  E +    E E  +E E+   +E EE+      EEE++ +
Sbjct: 668 STLELQVPSKSQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDAD 727

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           + + E ++   EE E  E     E+ +L
Sbjct: 728 DFKNEWQDISLEELEALEANLLAEQNSL 755

All proteins in this family for which functions are known are flap endonucleases that generate the 3' incision next to DNA damage as part of nucleotide excision repair. This family is related to many other flap endonuclease families including the fen1 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1034

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 20/83 (24%), Positives = 54/83 (65%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
           E++ +++EE+  EE + ++  E+E  ++ E+E  + +E++++ EE E++ + E++++EE+
Sbjct: 78  EQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQ 137

Query: 250 EEEEEGEEEEEEEEEEEEEEEEA 272
             +   E++++ E  + +   EA
Sbjct: 138 ARKAAAEQKKKAEAAKAKAAAEA 160

Length = 387

>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 18/80 (22%), Positives = 41/80 (51%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253
             +   EE+      E EE +++E+EEEEE+E ++    +E E  E+  E+ +   ++ +
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLEKFKALAKQYK 232

Query: 254 EGEEEEEEEEEEEEEEEEAL 273
           +  + +E++ E    + +  
Sbjct: 233 KLRKAQEKKVEGRLAQHKKY 252

Length = 619

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 20/77 (25%), Positives = 35/77 (45%)

Query: 198  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEE 257
             E+++ EE   EE+   + + +E E  E E +     ++    E E  + EEE ++  EE
Sbjct: 3832 NEDDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEE 3891

Query: 258  EEEEEEEEEEEEEEALW 274
              +  E+      E LW
Sbjct: 3892 VNDIPEDLSNSLNEKLW 3908

Length = 4600

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 23/84 (27%), Positives = 43/84 (51%)

Query: 192  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
            E++E+  E+  EE  +E EE  E+  + +EE E+ E  E++  +   + + +      E 
Sbjct: 4057 EDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFASAEA 4116

Query: 252  EEEGEEEEEEEEEEEEEEEEALWG 275
            +EE  ++    E EE  EE+ + G
Sbjct: 4117 DEENTDKGIVGENEELGEEDGVRG 4140

Length = 4600

>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 17/89 (19%), Positives = 41/89 (46%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
             + +++E+E E  E+ E E E + E+ EE+E+E++ E  E     ++       +    
Sbjct: 655 LEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRALPKVLNL 714

Query: 243 EEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            +  +  + E+E   ++E+    +    +
Sbjct: 715 PDALDGGDSEDEEGMDDEQMMRLDTYLAQ 743

This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localised exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units. Length = 784

>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function unknown]

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 22/88 (25%), Positives = 43/88 (48%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
            +    E+  ++    +     + +  E+EEEE+ +  +EE      ++++ +E + EE 
Sbjct: 367 GFLPGREQTSKKAAVPKGTSFYQAKWAEDEEEEDGQCNDEESTMSAIDDDDPKENDNEEV 426

Query: 243 EEEEEEEEEEEEGEEEEEEEEEEEEEEE 270
             +EE   ++ EG EE   EEEE +  E
Sbjct: 427 AGDEESAIDDNEGFEELSPEEEERQLRE 454

Length = 769

>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 20/89 (22%), Positives = 47/89 (52%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K    +   E +E+++EE+E + +  EE+    + ++ +   + +  +++ ++++ E+E 
Sbjct: 85  KSTNLDASNEGDEDDDEEDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDET 144

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
                E E+  +E  EE+E EEEE+    
Sbjct: 145 AALLRELEKIKKERAEEKEREEEEKAAEE 173

This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing. Length = 241

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 17/49 (34%), Positives = 32/49 (65%)

Query: 210 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEE 258
            ++EEEE EEE  +E E+E+  E + E +E+++ E  + + E+E+ + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 42/88 (47%), Positives = 49/88 (55%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            EE EE +EE  E +EE EE E E     E  EE E E EE EE  EE +E+ E  +EE 
Sbjct: 280 REELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEEL 339

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           EE E   EE E+   E EE +EE EE L
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKL 367

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 34/89 (38%), Positives = 42/89 (47%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            +   EE E+   E EE +EE EE+     EE EE  E   EE  E E E  E   E EE
Sbjct: 342 RETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEE 401

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            + E E  EE  E   E  E+ +EE +E 
Sbjct: 402 LKREIESLEERLERLSERLEDLKEELKEL 430

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 34/88 (38%), Positives = 42/88 (47%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           ++ E  +EE EE E   EE E+   E EE +EE EE+     EE EE  E   EE  E E
Sbjct: 330 EKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELE 389

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            E  E   E  E + E E  EE  E  +
Sbjct: 390 AELAEIRNELEELKREIESLEERLERLS 417

Length = 1163

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 30/94 (31%), Positives = 44/94 (46%)

Query: 160 DEANSCNVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 219
           DE+      D     D           EEE EE+E+E+ +  ++  E+E+E+EE E   E
Sbjct: 257 DESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPE 316

Query: 220 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253
              EEEE EE E     ++EEE+EE     +   
Sbjct: 317 SPVEEEESEEPEPPPLPKKEEEKEEVTVSPDGGR 350

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 20/31 (64%), Positives = 20/31 (64%)

Query: 243 EEEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
               E EEEEEE EE  EEEEEEEEEEE   
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTF 330

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 18/67 (26%), Positives = 50/67 (74%)

Query: 212 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           +E EEE  EEE+++EE+++++++E+E++++++++E++E+E+++     ++   ++  E +
Sbjct: 43  KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNETD 102

Query: 272 ALWGYAD 278
              G+AD
Sbjct: 103 NEAGFAD 109

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 20/88 (22%), Positives = 52/88 (59%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            E+  ++ E+  ++ EE++++ EE + ++  E + + E E E++ +EE +++ EEE + +
Sbjct: 100 AEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAK 159

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
              E +++    +++ E E + + E +A
Sbjct: 160 AAAEAKKKAAEAKKKAEAEAKAKAEAKA 187

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 16/84 (19%), Positives = 50/84 (59%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
            ++    +++++   ++E+E +++ E++ EE E++   E+  ++E E+    E+  ++ E
Sbjct: 49  AQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAE 108

Query: 249 EEEEEEGEEEEEEEEEEEEEEEEA 272
           +  ++  E++++ EE + ++  EA
Sbjct: 109 QAAKQAEEKQKQAEEAKAKQAAEA 132

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 27/66 (40%), Positives = 36/66 (54%)

Query: 203 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEE 262
               EEE  EEE   EE   EE+EE   E E  ++EE EEE+ EEE + E+  +   E  
Sbjct: 464 PLLPEEELAEEEAAAEEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRLRELA 523

Query: 263 EEEEEE 268
           +E+ EE
Sbjct: 524 KEDPEE 529

Length = 542

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 44/84 (52%), Positives = 46/84 (54%)

Query: 186  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE +EE  EE EE  E
Sbjct: 976  EENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVE 1035

Query: 246  EEEEEEEEEGEEEEEEEEEEEEEE 269
            E +EE  EE EE  EE  EE  EE
Sbjct: 1036 EYDEENVEEIEENAEENVEENIEE 1059

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 44/84 (52%), Positives = 46/84 (54%)

Query: 186  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE +
Sbjct: 964  EENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYD 1023

Query: 246  EEEEEEEEEGEEEEEEEEEEEEEE 269
            EE  EE EE  EE +EE  EE EE
Sbjct: 1024 EENVEEVEENVEEYDEENVEEIEE 1047

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 41.7 bits (97), Expect = 3e-04
 Identities = 45/86 (52%), Positives = 47/86 (54%)

Query: 186  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            EE  EE  EE  EE  EE  EE  EE +EE  EE EE  EE +EE  EE EE  EE  EE
Sbjct: 996  EENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEE 1055

Query: 246  EEEEEEEEEGEEEEEEEEEEEEEEEE 271
              EE  EE  EE  EE EE  EE  E
Sbjct: 1056 NIEENIEEYDEENVEEIEENIEENIE 1081

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 41.7 bits (97), Expect = 3e-04
 Identities = 44/86 (51%), Positives = 47/86 (54%)

Query: 186  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE +EE  EE EE  EE +E
Sbjct: 980  EENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDE 1039

Query: 246  EEEEEEEEEGEEEEEEEEEEEEEEEE 271
            E  EE EE  EE  EE  EE  EE +
Sbjct: 1040 ENVEEIEENAEENVEENIEENIEEYD 1065

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 41.7 bits (97), Expect = 3e-04
 Identities = 44/84 (52%), Positives = 47/84 (55%)

Query: 187  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
            EE  EE  EE  EE  EE  EE  EE  EE  EE  EE +EE  EE EE  EE +EE  E
Sbjct: 984  EENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVE 1043

Query: 247  EEEEEEEEGEEEEEEEEEEEEEEE 270
            E EE  EE  EE  EE  EE +EE
Sbjct: 1044 EIEENAEENVEENIEENIEEYDEE 1067

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 41.7 bits (97), Expect = 3e-04
 Identities = 41/83 (49%), Positives = 45/83 (54%)

Query: 188  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
            EE  EE  EE +EE  EE EE  EE  EE  EE  EE  EE EE  EE  EE  EE  EE
Sbjct: 1054 EENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEE 1113

Query: 248  EEEEEEEGEEEEEEEEEEEEEEE 270
              EE  E  ++E  EE  EE +E
Sbjct: 1114 NAEENAEEYDDENPEEHNEEYDE 1136

Length = 1136

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 14/77 (18%), Positives = 55/77 (71%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEG 255
            E  E +++++E  EE E+ ++E EE+++ + ++++ ++++++++++++++++++ E++ 
Sbjct: 55  AEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKD 114

Query: 256 EEEEEEEEEEEEEEEEA 272
           E+E E++ E+  +    
Sbjct: 115 EKEAEDKLEDLTKSYSE 131

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 15/79 (18%), Positives = 57/79 (72%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254
            E  E +++++E  EE E+ ++E EE+++ + ++++ ++++++++++++++++++ E+++
Sbjct: 55  AEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKD 114

Query: 255 GEEEEEEEEEEEEEEEEAL 273
            +E E++ E+  +   E L
Sbjct: 115 EKEAEDKLEDLTKSYSETL 133

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 29/72 (40%), Positives = 49/72 (68%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEG 255
            +E+EEE+E  +E  + +EEE++ E EE E+E+E  E E E+  E++E+EE  +EEE+E 
Sbjct: 36  ADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEE 95

Query: 256 EEEEEEEEEEEE 267
           E E+ +++E   
Sbjct: 96  EAEDVKQQEVFS 107

Bacillus spores are protected by a protein shell consisting of over 50 different polypeptides, known as the coat. This family of proteins has an important morphogenetic role in coat assembly, it is involved in the assembly of at least 5 different coat proteins including CotB, CotG, CotS, CotSA and CotW. It is likely to act at a late stage of coat assembly. Length = 185

>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 23/73 (31%), Positives = 35/73 (47%)

Query: 199 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEE 258
             E + E   +E+   E     +EE ++   E  + EE++    E    + E  EE EEE
Sbjct: 109 SGESDLENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEE 168

Query: 259 EEEEEEEEEEEEE 271
             EEEEE +E E+
Sbjct: 169 IAEEEEEVKEPED 181

Members of this family contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of pfam00520 and, less often, one copy of pfam00612. Length = 230

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 23/46 (50%), Positives = 36/46 (78%)

Query: 214 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEE 259
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE++ E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 23/46 (50%), Positives = 36/46 (78%)

Query: 216 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEE 261
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE ++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 22/46 (47%), Positives = 36/46 (78%)

Query: 213 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEE 258
            +EE+ EE  E+ EEEEEE++  E E+E+EE+E+EEEEE+++  ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 35/87 (40%), Positives = 55/87 (63%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            + EE++   ++ E EEEE EE ++ EE+ E E +EEEE EEE E+++EEEE +E EE+ 
Sbjct: 9   AKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQA 68

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            +E+EE E+       EEE  ++   +
Sbjct: 69  RKEQEEYEKLKSSFVVEEEGTDKLSAD 95

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 33/83 (39%), Positives = 43/83 (51%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E  E E  ++     +   E++E   E    E+ EEEE EE EE+EEEE EEE EE E  
Sbjct: 46  ELAEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPL 105

Query: 246 EEEEEEEEEGEEEEEEEEEEEEE 268
            +  EE  E  E+ EE EE  + 
Sbjct: 106 GDTPEELTEASEQLEEHEEGFQA 128

Length = 306

>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 33/80 (41%), Positives = 42/80 (52%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
           E  E E  ++     +   E++E   E    E+ EEEE EE EE+EEEE EEE EE E  
Sbjct: 46  ELAEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPL 105

Query: 253 EEGEEEEEEEEEEEEEEEEA 272
            +  EE  E  E+ EE EE 
Sbjct: 106 GDTPEELTEASEQLEEHEEG 125

Length = 306

>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 22/84 (26%), Positives = 48/84 (57%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           E++ ++ E +  E++  +   ++E + +  ++E+ + E  +E ++EE  +E     + E+
Sbjct: 702 EDDSDDSELDFAEDDFSDSTSDDEPKLDAIDDEDAKSEGSQESDQEEGLDEIFYSFDGEQ 761

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEE 270
           +  +   E  EE+E  EEE+EEEE
Sbjct: 762 DNSDSFAESSEEDESSEEEKEEEE 785

Length = 821

>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 29/77 (37%), Positives = 48/77 (62%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KE ++ + E  EE+  +E E +EE++ +EE+ E EE E+EE  E+ EE  E + EE ++E
Sbjct: 3   KECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDE 62

Query: 245 EEEEEEEEEEGEEEEEE 261
             + +EE ++ E E E 
Sbjct: 63  NNKLKEENKKLENELEA 79

Length = 211

>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2)

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 22/88 (25%), Positives = 39/88 (44%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
              E +      E +   + +  +E EE  E +    E E  +E E+   +E EE+    
Sbjct: 659 SFIEVDSVSSTLELQVPSKSQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVG 718

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
             EEE++ ++ + E ++   EE E  EA
Sbjct: 719 MIEEEKDADDFKNEWQDISLEELEALEA 746

All proteins in this family for which functions are known are flap endonucleases that generate the 3' incision next to DNA damage as part of nucleotide excision repair. This family is related to many other flap endonuclease families including the fen1 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1034

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 22/94 (23%), Positives = 57/94 (60%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K+ E++ +++EE+  EE + ++  E+E  ++ E+E  + +E++++ EE E++ + E++++
Sbjct: 75  KKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQ 134

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEALWGYAD 278
           EE+  +   E +++ E  + +   E   L   A+
Sbjct: 135 EEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAE 168

Length = 387

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 20/89 (22%), Positives = 52/89 (58%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KEE+  EE + ++  E+E  ++ E+E  + +E++++ EE E++ + E++++EE+  +   
Sbjct: 84  KEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAA 143

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E++++ E  + +   E  + +   E +  
Sbjct: 144 EQKKKAEAAKAKAAAEAAKLKAAAEAKKK 172

Length = 387

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 19/87 (21%), Positives = 56/87 (64%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           + ++   ++ E++ +++EE+  EE + ++  E+E  ++ E+E  + +E++++ EE E++ 
Sbjct: 68  QSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQA 127

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           + E++++EE   +   E++++ E  +A
Sbjct: 128 QLEQKQQEEQARKAAAEQKKKAEAAKA 154

Length = 387

>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 28/85 (32%), Positives = 44/85 (51%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            EEEEE E   +E+ EE   + EEE     E +E   E++   E E E+EE  ++ EE+ 
Sbjct: 184 AEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKL 243

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEE 269
            +E E + E  E++ + E   +  E
Sbjct: 244 RQELERQAEAHEQKLKNELALQAIE 268

Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 19/57 (33%), Positives = 23/57 (40%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
           K     EE  E  E  EEE          EEEEE E E+EE  EE +  + +     
Sbjct: 10  KLAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 28/84 (33%), Positives = 45/84 (53%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KEE  +   E E E +E   E +  E    + EE  + + E  +++EE  E++E+E   +
Sbjct: 57  KEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNK 116

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEE 268
           E+  +E+EEE EE   E+ EE E 
Sbjct: 117 EKNLDEKEEELEELIAEQREELER 140

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 34/88 (38%), Positives = 45/88 (51%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EEE E+  +E EE   +     ++    E E E+ EE   +  +E  E E E EE EE  
Sbjct: 711 EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL 770

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           EE EEE  E E E EE E + E+ +E L
Sbjct: 771 EEAEEELAEAEAEIEELEAQIEQLKEEL 798

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 23/81 (28%), Positives = 39/81 (48%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EEE   +  EE ++   +E      EE  E+  E+ E+  E +EE ++E  ++ ++  E 
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEV 503

Query: 246 EEEEEEEEEGEEEEEEEEEEE 266
           +     EE G  EE  E+ E 
Sbjct: 504 DTYLLLEELGINEETYEKLEA 524

Length = 819

>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740)

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 26/74 (35%), Positives = 41/74 (55%)

Query: 206 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEE 265
           +++EE         E + E  +    +   EEEEE E EE+EE  E+E G+  +E+ EEE
Sbjct: 111 DDDEENLPSSIAPPEIDPEPRKPIVPDLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEE 170

Query: 266 EEEEEEALWGYADM 279
           EEEE + +  + D+
Sbjct: 171 EEEELKTMKDFIDL 184

This family consists of several uncharacterized plant proteins of unknown function. Length = 565

>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 26/82 (31%), Positives = 47/82 (57%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           ++E E   ++ EE   E+++ +E  E + E EE     E+  +EE ++  E ++++ EE 
Sbjct: 503 DDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADKKKVEEA 562

Query: 248 EEEEEEEGEEEEEEEEEEEEEE 269
            E  +EE E E++EE E + EE
Sbjct: 563 IEWLKEELEGEDKEEIEAKTEE 584

Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598

>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 18/87 (20%), Positives = 44/87 (50%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
             EE E   EE++  ++E + E  E +E EEE +   E + E  E + + ++  +    +
Sbjct: 832 RPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKNEFVEFKNDPKKLNKLIIAK 891

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           +   +     +E +++E+  +++++ L
Sbjct: 892 DVLIKLVISSDEIKQDEKTTKKKKKDL 918

Length = 925

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 15/80 (18%), Positives = 28/80 (35%)

Query: 182 PFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
           P +++  EE E    E E +     + E        +   +E  E +    ++      +
Sbjct: 169 PSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQ 228

Query: 242 EEEEEEEEEEEEEGEEEEEE 261
           +  E E+E  E E E     
Sbjct: 229 QAVEHEDEPTEPEREGPPFP 248

Length = 413

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 16/49 (32%), Positives = 31/49 (63%)

Query: 221 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEE 269
            ++EEEE EEE  +E E+E+  E + E +E+++    + + E+E+ + E
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 30/88 (34%), Positives = 61/88 (69%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            + EE  +  EEE++ + EE ++ EE + + EE ++ EEE+++ E+ +++E EE+++ EE 
Sbjct: 1593 RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL 1652

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            ++ EEE + +  EE ++ EE++++ EEA
Sbjct: 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEA 1680

Length = 2084

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 16/85 (18%), Positives = 46/85 (54%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
           +  +      + EE E++   E   + E E++E+ EE EEE+ EEE    ++ ++ ++ +
Sbjct: 286 YISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLK 345

Query: 243 EEEEEEEEEEEEGEEEEEEEEEEEE 267
            ++   ++++ +  ++ ++ + + E
Sbjct: 346 GKKNGLDKDDSDSGDDSDDSDIDGE 370

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 17/88 (19%), Positives = 51/88 (57%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
              ++    +++++   ++E+E +++ E++ EE E++   E+  ++E E+    E+  ++
Sbjct: 47  AVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQ 106

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            E+  ++ EE +++ EE + ++  E +A
Sbjct: 107 AEQAAKQAEEKQKQAEEAKAKQAAEAKA 134

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 16/102 (15%), Positives = 55/102 (53%)

Query: 171 SGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 230
            G  +++  ++       ++    +++++   ++E+E +++ E++ EE E++   E+  +
Sbjct: 32  GGGGEIIQAVLVDPGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQ 91

Query: 231 EEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           +E E+    E+  ++ E+  ++ E ++++ EE + ++  E  
Sbjct: 92  KELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAK 133

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 41.7 bits (97), Expect = 4e-04
 Identities = 44/87 (50%), Positives = 47/87 (54%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +E  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE +
Sbjct: 964  EENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYD 1023

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            EE  EE EE  EE +EE  EE EE  E
Sbjct: 1024 EENVEEVEENVEEYDEENVEEIEENAE 1050

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 41.7 bits (97), Expect = 4e-04
 Identities = 44/84 (52%), Positives = 47/84 (55%)

Query: 186  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            EE  EE  EE  EE  EE  EE  EE  EE  EE  EE +EE  EE EE  EE +EE  E
Sbjct: 984  EENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVE 1043

Query: 246  EEEEEEEEEGEEEEEEEEEEEEEE 269
            E EE  EE  EE  EE  EE +EE
Sbjct: 1044 EIEENAEENVEENIEENIEEYDEE 1067

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 41.7 bits (97), Expect = 4e-04
 Identities = 43/90 (47%), Positives = 46/90 (51%)

Query: 181  MPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240
            +    EE  EE+ EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE 
Sbjct: 947  IEEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEEN 1006

Query: 241  EEEEEEEEEEEEEEGEEEEEEEEEEEEEEE 270
             EE  EE  EE  E  +EE  EE EE  EE
Sbjct: 1007 VEENVEENIEENVEEYDEENVEEVEENVEE 1036

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 41.7 bits (97), Expect = 4e-04
 Identities = 44/87 (50%), Positives = 47/87 (54%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +E  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE +EE  EE E
Sbjct: 972  EENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVE 1031

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            E  EE +EE  EE EE  EE  EE  E
Sbjct: 1032 ENVEEYDEENVEEIEENAEENVEENIE 1058

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 41.7 bits (97), Expect = 4e-04
 Identities = 44/86 (51%), Positives = 46/86 (53%)

Query: 187  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
            EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE +
Sbjct: 964  EENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYD 1023

Query: 247  EEEEEEEEGEEEEEEEEEEEEEEEEA 272
            EE  EE E   EE +EE  EE EE A
Sbjct: 1024 EENVEEVEENVEEYDEENVEEIEENA 1049

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 44/87 (50%), Positives = 47/87 (54%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +E  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  
Sbjct: 960  EENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENV 1019

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            EE +EE  EE EE  EE +EE  EE E
Sbjct: 1020 EEYDEENVEEVEENVEEYDEENVEEIE 1046

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 44/87 (50%), Positives = 46/87 (52%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +E  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE +EE  
Sbjct: 968  EENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENV 1027

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            EE EE  EE  EE  EE EE  EE  E
Sbjct: 1028 EEVEENVEEYDEENVEEIEENAEENVE 1054

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 43/85 (50%), Positives = 47/85 (55%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +E+ EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  
Sbjct: 956  EEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENI 1015

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEE 269
            EE  EE +EE  EE EE  EE +EE
Sbjct: 1016 EENVEEYDEENVEEVEENVEEYDEE 1040

Length = 1136

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 15/79 (18%), Positives = 56/79 (70%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253
            E  E +++++E  EE E+ ++E EE+++ + ++++ ++++++++++++++++++ E+++
Sbjct: 55  AEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKD 114

Query: 254 EGEEEEEEEEEEEEEEEEA 272
           E E E++ E+  +   E  
Sbjct: 115 EKEAEDKLEDLTKSYSETL 133

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 22/46 (47%), Positives = 36/46 (78%)

Query: 223 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEE 268
            +EE+ EE  E+ EEEEEE++  E E+E+EE+ +EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 22/46 (47%), Positives = 36/46 (78%)

Query: 226 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            +EE+ EE  E+ EEEEEE++  E E+E+ E+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 33/83 (39%), Positives = 43/83 (51%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           E  E E  ++     +   E++E   E    E+ EEEE EE EE+EEEE EEE EE E  
Sbjct: 46  ELAEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPL 105

Query: 248 EEEEEEEGEEEEEEEEEEEEEEE 270
            +  EE  E  E+ EE EE  + 
Sbjct: 106 GDTPEELTEASEQLEEHEEGFQA 128

Length = 306

>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 33/83 (39%), Positives = 43/83 (51%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
           E  E E  ++     +   E++E   E    E+ EEEE EE EE+EEEE EEE EE E  
Sbjct: 46  ELAEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPL 105

Query: 249 EEEEEEGEEEEEEEEEEEEEEEE 271
            +  EE  E  E+ EE EE  + 
Sbjct: 106 GDTPEELTEASEQLEEHEEGFQA 128

Length = 306

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 25/86 (29%), Positives = 60/86 (69%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KEEE+E+E+ +EE+++++E+ +EE ++ + +EE +E+   +E+E+E+E++ EE  + EEE
Sbjct: 104 KEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEE 163

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEE 270
           ++ E    +   ++  +++   +++E
Sbjct: 164 KKRERVRAKSRPKKPPKKKPPNKKKE 189

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 24/88 (27%), Positives = 60/88 (68%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +EEE+E+E+ +EE+++++E+ +EE ++ + +EE +E+   +E+E+E+E++ EE  + EE
Sbjct: 103 GKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREE 162

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E++ E    +   ++  +++   +++E 
Sbjct: 163 EKKRERVRAKSRPKKPPKKKPPNKKKEP 190

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 22/90 (24%), Positives = 50/90 (55%)

Query: 182 PFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
           P  +++ ++ E +  E++  +   ++E + +  ++E+ + E  +E ++EE  +E     +
Sbjct: 699 PDVEDDSDDSELDFAEDDFSDSTSDDEPKLDAIDDEDAKSEGSQESDQEEGLDEIFYSFD 758

Query: 242 EEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            E++  +   E   E+E  EEE+EEEE +E
Sbjct: 759 GEQDNSDSFAESSEEDESSEEEKEEEENKE 788

Length = 821

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 21/40 (52%), Positives = 26/40 (65%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 224
           K+  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 281 KDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/42 (47%), Positives = 27/42 (64%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 226
            +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 227
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 228
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 229
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 230
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 231
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 232
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 233
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 234
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 235
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 236
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 197 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 237
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 198 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 238
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 199 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 239
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 200 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 201 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 202 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 203 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 204 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 205 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 206 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 207 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 208 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 209 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 210 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 21/49 (42%), Positives = 29/49 (59%)

Query: 231 EEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEALWGYADM 279
           +++  +EE +E    + +    EE EEEEEEEEEEE  EEEA  G   +
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEAAAGLGAL 328

Length = 330

>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 29/79 (36%), Positives = 48/79 (60%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
            E+E ++ + E  EE+  +E E +EE++ +EE+ E EE E+EE  E+ EE  E + EE +
Sbjct: 1   MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELK 60

Query: 249 EEEEEEGEEEEEEEEEEEE 267
           +E  +  EE ++ E E E 
Sbjct: 61  DENNKLKEENKKLENELEA 79

Length = 211

>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 28/79 (35%), Positives = 48/79 (60%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
            E+E ++ + E  EE+  +E E +EE++ +EE+ E EE E+EE  E+ EE  E + EE +
Sbjct: 1   MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELK 60

Query: 248 EEEEEEEGEEEEEEEEEEE 266
           +E  + + E ++ E E E 
Sbjct: 61  DENNKLKEENKKLENELEA 79

Length = 211

>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2)

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 22/86 (25%), Positives = 37/86 (43%)

Query: 181 MPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240
           M     E E+EE E +    E +      E +   + +  +E EE  E +    E E  +
Sbjct: 642 MEVEPMESEKEESESDGSFIEVDSVSSTLELQVPSKSQPTDESEENAENKVASIEGEHRK 701

Query: 241 EEEEEEEEEEEEEEGEEEEEEEEEEE 266
           E E+   +E EE+      EEE++ +
Sbjct: 702 EIEDLLFDESEEDNIVGMIEEEKDAD 727

All proteins in this family for which functions are known are flap endonucleases that generate the 3' incision next to DNA damage as part of nucleotide excision repair. This family is related to many other flap endonuclease families including the fen1 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1034

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 19/88 (21%), Positives = 57/88 (64%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           ++   ++ E++ +++EE+  EE + ++  E+E  ++ E+E  + +E++++ EE E++ + 
Sbjct: 70  QQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQL 129

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E++++EE+  +   E++++ E  + +A 
Sbjct: 130 EQKQQEEQARKAAAEQKKKAEAAKAKAA 157

Length = 387

>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated

 Score = 41.3 bits (98), Expect = 4e-04
 Identities = 19/86 (22%), Positives = 45/86 (52%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
             +   EE+      E EE +++E+EEEEE+E ++    +E E  E+  E+ +   ++ +
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLEKFKALAKQYK 232

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
           +  + +E++ E    + ++  +  E+
Sbjct: 233 KLRKAQEKKVEGRLAQHKKYAKLREK 258

Length = 619

>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 20/87 (22%), Positives = 44/87 (50%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
             +   EE+      E EE +++E+EEEEE+E ++    +E E  E+  E+ +   ++ +
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLEKFKALAKQYK 232

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           +  + +E+  E    + ++  +  E L
Sbjct: 233 KLRKAQEKKVEGRLAQHKKYAKLREKL 259

Length = 619

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 29/89 (32%), Positives = 47/89 (52%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KE   E +EE  +   E E E +E   E +  E    + EE  + + E  +++EE  E++
Sbjct: 50  KEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKK 109

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E+E   +E+  +E+EEE EE   E+ E L
Sbjct: 110 EKELSNKEKNLDEKEEELEELIAEQREEL 138

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 27/88 (30%), Positives = 50/88 (56%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           ++E E   ++ EE   E+++ +E  E + E EE     E+  +EE ++  E ++++ EE 
Sbjct: 503 DDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADKKKVEEA 562

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            E  +EE EGE++EE E + EE ++   
Sbjct: 563 IEWLKEELEGEDKEEIEAKTEELQKVVQ 590

Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 32/67 (47%), Positives = 46/67 (68%)

Query: 200 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEE 259
           EEE EE+E        EEEE++EE E EEEEEEEE + + ++ E++E E ++EEEGE+E 
Sbjct: 19  EEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKEL 78

Query: 260 EEEEEEE 266
           + EE  +
Sbjct: 79  QREERLK 85

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 22/89 (24%), Positives = 41/89 (46%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
                E+++ EE   EE+   + + +E E  E E +     ++    E E  + EEE ++ 
Sbjct: 3829 NTLNEDDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDL 3888

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            +EE  +  E+      E+  +E  EE+ L
Sbjct: 3889 DEEVNDIPEDLSNSLNEKLWDEPNEEDLL 3917

Length = 4600

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 220 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEALWGYAD 278
           +E  E EE EEE + E E   E +  ++E+E   E +     EE+E+ ++ E L     
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEI 285

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function unknown]

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 25/98 (25%), Positives = 45/98 (45%)

Query: 172 GSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 231
           G T V      F    E+  ++    +     + +  E+EEEE+ +  +EE      +++
Sbjct: 357 GLTTVRIDDHGFLPGREQTSKKAAVPKGTSFYQAKWAEDEEEEDGQCNDEESTMSAIDDD 416

Query: 232 EEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEE 269
           + +E + EE   +EE   ++ E  EE   EEEE +  E
Sbjct: 417 DPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLRE 454

Length = 769

>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function unknown]

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 22/76 (28%), Positives = 39/76 (51%)

Query: 203 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEE 262
             E+EEEE+ +  +EE      ++++ +E + EE   +EE   ++ E  EE   EEEE +
Sbjct: 392 WAEDEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQ 451

Query: 263 EEEEEEEEEALWGYAD 278
             E  + E+    + D
Sbjct: 452 LREFRDMEKEDREFPD 467

Length = 769

>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function unknown]

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 22/67 (32%), Positives = 36/67 (53%)

Query: 213 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
             E+EEEE+ +  +EE      ++++ +E + EE   +EE   ++ E  EE   EEEE  
Sbjct: 392 WAEDEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQ 451

Query: 273 LWGYADM 279
           L  + DM
Sbjct: 452 LREFRDM 458

Length = 769

>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 35/95 (36%), Positives = 58/95 (61%), Gaps = 5/95 (5%)

Query: 185 KEEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 239
           + EEE +EEE EE  ++         E  E+E E ++ ++E + E +E++E +EEEE E+
Sbjct: 402 EGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELED 461

Query: 240 EEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEALW 274
           EEE + E+   +  +  E+ ++EEEEEE +EE  W
Sbjct: 462 EEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPW 496

This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome. Length = 728

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 18/86 (20%), Positives = 40/86 (46%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
              E  E  EE      + +++  E  E ++ E  E+   ++E+++    E +    +E+
Sbjct: 628 TRREGRENREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEK 687

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEEA 272
            + ++E +    EE+  +E E+EE  
Sbjct: 688 RQAQQEAKALNVEEQSVQETEQEERV 713

Length = 1068

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 18/86 (20%), Positives = 41/86 (47%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +   E  E  EE      + +++  E  E ++ E  E+   ++E+++    E +    +E
Sbjct: 627 RTRREGRENREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDE 686

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEE 270
           + + ++E +    EE+  +E E+EE 
Sbjct: 687 KRQAQQEAKALNVEEQSVQETEQEER 712

Length = 1068

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 36/88 (40%), Positives = 42/88 (47%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EE E   EE E+   E EE +EE EE+     EE EE  E   EE  E E E  E   E 
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNEL 399

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           EE + E E  EE  E   E  E+ +E L
Sbjct: 400 EELKREIESLEERLERLSERLEDLKEEL 427

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 35/88 (39%), Positives = 40/88 (45%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
             +EE EE E   EE E+   E EE +EE EE+     EE EE  E   EE  E E E  
Sbjct: 334 ALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELA 393

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E   E EE + E E  EE  E   E   
Sbjct: 394 EIRNELEELKREIESLEERLERLSERLE 421

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 36/89 (40%), Positives = 43/89 (48%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            EE E+   E EE +EE EE+     EE EE  E   EE  E E E  E   E EE + E
Sbjct: 346 LEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKRE 405

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            E  EE  E   E  E+ +EE +E E  L
Sbjct: 406 IESLEERLERLSERLEDLKEELKELEAEL 434

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 35/89 (39%), Positives = 43/89 (48%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            ++   E EE +EE EE+     EE EE  E   EE  E E E  E   E EE + E E 
Sbjct: 349 LEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIES 408

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            EE  E   E  E+ +EE +E E E EE 
Sbjct: 409 LEERLERLSERLEDLKEELKELEAELEEL 437

Length = 1163

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 44/87 (50%), Positives = 48/87 (55%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +E  EE  EE  EE  EE  EE  EE +EE  EE EE  EE +EE  EE EE  EE  EE
Sbjct: 996  EENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEE 1055

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
              EE  EE + E  EE EE  EE  EE
Sbjct: 1056 NIEENIEEYDEENVEEIEENIEENIEE 1082

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 43/86 (50%), Positives = 46/86 (53%)

Query: 188  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
            EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  
Sbjct: 960  EENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENV 1019

Query: 248  EEEEEEEGEEEEEEEEEEEEEEEEAL 273
            EE +EE  EE EE  EE +EE  E +
Sbjct: 1020 EEYDEENVEEVEENVEEYDEENVEEI 1045

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 40.9 bits (95), Expect = 5e-04
 Identities = 43/84 (51%), Positives = 45/84 (53%)

Query: 188  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
            EE  EE+ EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  
Sbjct: 952  EENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENV 1011

Query: 248  EEEEEEEGEEEEEEEEEEEEEEEE 271
            EE  EE  EE +EE  EE EE  E
Sbjct: 1012 EENIEENVEEYDEENVEEVEENVE 1035

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 40.9 bits (95), Expect = 5e-04
 Identities = 47/113 (41%), Positives = 56/113 (49%)

Query: 158  MTDEANSCNVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 217
            +  E N  N    + + +V  H+    +   EE+ EE  EE+ EE  EE  EE  EE  E
Sbjct: 917  IAHEINLINKELKNQNENVPEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVE 976

Query: 218  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEE 270
            E  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE +EE  EE
Sbjct: 977  ENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEE 1029

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 40.9 bits (95), Expect = 5e-04
 Identities = 43/84 (51%), Positives = 45/84 (53%)

Query: 187  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
            EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE +EE  EE EE  E
Sbjct: 976  EENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVE 1035

Query: 247  EEEEEEEEGEEEEEEEEEEEEEEE 270
            E +EE  E  EE  EE  EE  EE
Sbjct: 1036 EYDEENVEEIEENAEENVEENIEE 1059

Length = 1136

>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 24/73 (32%), Positives = 35/73 (47%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
             E + E   +E+   E     +EE ++   E  + EE++    E    + E  EEEEEE
Sbjct: 109 SGESDLENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEE 168

Query: 247 EEEEEEEEGEEEE 259
             EEEEE  E E+
Sbjct: 169 IAEEEEEVKEPED 181

Members of this family contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of pfam00520 and, less often, one copy of pfam00612. Length = 230

>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 23/73 (31%), Positives = 35/73 (47%)

Query: 198 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEE 257
             E + E   +E+   E     +EE ++   E  + EE++    E    + E  EEE EE
Sbjct: 109 SGESDLENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEE 168

Query: 258 EEEEEEEEEEEEE 270
             EEEEE +E E+
Sbjct: 169 IAEEEEEVKEPED 181

Members of this family contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of pfam00520 and, less often, one copy of pfam00612. Length = 230

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 23/87 (26%), Positives = 58/87 (66%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
             +EEE+E+E+ +EE+++++E+ +EE ++ + +EE +E+   +E+E+E+E++ EE  + E
Sbjct: 102 SGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDRE 161

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           EE++ E        ++  +++   +++
Sbjct: 162 EEKKRERVRAKSRPKKPPKKKPPNKKK 188

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 25/88 (28%), Positives = 57/88 (64%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
              + +  +E + E  +EEE+E+E+ +EE+++++E+ +EE ++ + +EE +E+   +E+E
Sbjct: 88  PAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKE 147

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           +E+E++ EE  + EEE++ E    +   
Sbjct: 148 KEKEKKVEEPRDREEEKKRERVRAKSRP 175

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 24/86 (27%), Positives = 57/86 (66%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            E  +EEE+E+E+ +EE+++++E+ +EE ++ + +EE +E+   +E+E+E+E++ EE  +
Sbjct: 100 NESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRD 159

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEE 270
            EEE++ E    +   ++  +++   
Sbjct: 160 REEEKKRERVRAKSRPKKPPKKKPPN 185

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 23/87 (26%), Positives = 57/87 (65%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            + E  +EEE+E+E+ +EE+++++E+ +EE ++ + +EE +E+   +E+E+E+E++ EE 
Sbjct: 98  PKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEP 157

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            + EEE++      +   ++  +++  
Sbjct: 158 RDREEEKKRERVRAKSRPKKPPKKKPP 184

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 25/87 (28%), Positives = 58/87 (66%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K E  +EEE+E+E+ +EE+++++E+ +EE ++ + +EE +E+   +E+E+E+E++ EE  
Sbjct: 99  KNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPR 158

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           + EEE++ E    +   ++  +++   
Sbjct: 159 DREEEKKRERVRAKSRPKKPPKKKPPN 185

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 24/87 (27%), Positives = 58/87 (66%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            + E  +EEE+E+E+ +EE+++++E+ +EE ++ + +EE +E+   +E+E+E+E++ EE 
Sbjct: 98  PKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEP 157

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            + EEE++ E    +   ++  +++  
Sbjct: 158 RDREEEKKRERVRAKSRPKKPPKKKPP 184

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 223 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEE 264
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 228
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 229
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 230
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 231
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 232
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 233
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 234
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 235
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 236
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 237
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 197 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 238
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 198 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 239
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 199 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 200 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 201 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 202 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 203 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 204 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 205 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 206 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 207 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 208 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 209 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 210 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 211 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 212 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 213 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 226 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEE 267
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|235285 PRK04335, PRK04335, cell division protein ZipA; Provisional

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 28/81 (34%), Positives = 42/81 (51%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
             E EEEE++ E+EE     + + + + E+ E + EE  +EE  EE E    +    E +
Sbjct: 95  GGELEEEEDKFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEPEPVAAKVPMAEVQ 154

Query: 251 EEEEGEEEEEEEEEEEEEEEE 271
            EEE E E +E EE + E E 
Sbjct: 155 PEEETEIEVDEPEEPKPEPEL 175

Length = 313

>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 28/78 (35%), Positives = 48/78 (61%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           ++E ++ + E  EE+  +E E +EE++ +EE+ E EE E+EE  E+ EE  E + EE ++
Sbjct: 2   EKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKD 61

Query: 245 EEEEEEEEEEGEEEEEEE 262
           E  + +EE +  E E E 
Sbjct: 62  ENNKLKEENKKLENELEA 79

Length = 211

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 19/89 (21%), Positives = 56/89 (62%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
           Y   + ++   ++ E++ +++EE+  EE + ++  E+E  ++ E+E  + +E++++ EE 
Sbjct: 64  YGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEA 123

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E++ + E++++ E+  +   E++++ E A
Sbjct: 124 EKQAQLEQKQQEEQARKAAAEQKKKAEAA 152

Length = 387

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 20/88 (22%), Positives = 51/88 (57%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K+EE+  EE + ++  E+E  ++ E+E  + +E++++ EE E++ + E++++EE+  +  
Sbjct: 83  KKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAA 142

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            E++++ E    +   E  + +   E  
Sbjct: 143 AEQKKKAEAAKAKAAAEAAKLKAAAEAK 170

Length = 387

>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 29/87 (33%), Positives = 45/87 (51%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            K EEEEE E   +E+ EE   + EEE     E +E   E++   E E E+EE  ++ EE
Sbjct: 182 LKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEE 241

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEE 270
           +  +E E + E  E++ + E   +  E
Sbjct: 242 KLRQELERQAEAHEQKLKNELALQAIE 268

Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 33/89 (37%), Positives = 44/89 (49%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            ++E EE EEE E+  +E EE   +     ++    E E E+ EE   +  +E  E E E
Sbjct: 703 LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            EE EE  EE  EE  E E E EE E + 
Sbjct: 763 IEELEERLEEAEEELAEAEAEIEELEAQI 791

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 21/78 (26%), Positives = 37/78 (47%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
           EEE   +  EE ++   +E      EE  E+  E+ E+  E +EE ++E  ++ ++  E 
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEV 503

Query: 253 EEGEEEEEEEEEEEEEEE 270
           +     EE    EE  E+
Sbjct: 504 DTYLLLEELGINEETYEK 521

Length = 819

>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 23/90 (25%), Positives = 45/90 (50%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KE++          ++E E   ++ EE   E+++ +E  E + E EE     E+  +EE 
Sbjct: 489 KEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLKEEG 548

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEALW 274
           ++  E ++++ EE  E  +EE E E++   
Sbjct: 549 DKLPEADKKKVEEAIEWLKEELEGEDKEEI 578

Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 14/49 (28%), Positives = 29/49 (59%)

Query: 212 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEE 260
           +             E E +EE+ E++++++E+E+E++EEE + G + EE
Sbjct: 31  DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 13/51 (25%), Positives = 28/51 (54%)

Query: 223 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           +             E E +EE+ E++++++E+ +E++EEE +   + EEA 
Sbjct: 31  DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEEAR 81

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254
           ++EEE+ + + EE EE+EEE E+ E+  +EE+EE EE EEE     +      +   +E 
Sbjct: 18  KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQET 77

Query: 255 GE 256
             
Sbjct: 78  IS 79

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 23/81 (28%), Positives = 33/81 (40%)

Query: 199 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEE 258
            +     +  E       EE E+ E E +  EE  +  E+   E EE   + EE   E +
Sbjct: 67  LDYLRSVKGLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELD 126

Query: 259 EEEEEEEEEEEEEALWGYADM 279
           EE E+ E+  EE     Y D 
Sbjct: 127 EELEDLEDLLEELEPLAYLDF 147

Length = 660

>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 27/83 (32%), Positives = 42/83 (50%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
           E EEE  +++E+   E+ E+EE   + E EE        E EE  +E + E E EE   +
Sbjct: 590 EGEEELIQDDEKGNFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETEREENARK 649

Query: 252 EEEGEEEEEEEEEEEEEEEEALW 274
           +EE     E EE  + E+++  W
Sbjct: 650 KEELRGNFELEERGDPEKKDVDW 672

Length = 1077

>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 15/44 (34%), Positives = 20/44 (45%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 226
           F+++ EE EE+EE   E    E+      E EE EE       E
Sbjct: 203 FWRDPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246

Length = 249

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 17/99 (17%), Positives = 45/99 (45%), Gaps = 13/99 (13%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-------------EEEEEEEEEEEEEE 231
           K+ E+E    +E++++ EE  ++   ++++ EE             E E +      ++ 
Sbjct: 104 KQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKA 163

Query: 232 EEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEE 270
             E +++ E E  ++   E +++ E E   +   E +++
Sbjct: 164 AAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKK 202

Length = 387

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 18/86 (20%), Positives = 39/86 (45%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
                E  E  EE      + +++  E  E ++ E  E+   ++E+++    E +    +
Sbjct: 626 NRTRREGRENREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRND 685

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
           E+ + ++E      EE+  +E E+EE
Sbjct: 686 EKRQAQQEAKALNVEEQSVQETEQEE 711

Length = 1068

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 36/91 (39%), Positives = 44/91 (48%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            +E +EE EE+     EE EE  E   EE  E E E  E   E EE + E E  EE  E 
Sbjct: 356 LEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLER 415

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEEALW 274
             E  E+ +EE +E E E EE + E EE   
Sbjct: 416 LSERLEDLKEELKELEAELEELQTELEELNE 446

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 36/88 (40%), Positives = 43/88 (48%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
             EE E+   E EE +EE EE+     EE EE  E   EE  E E E  E   E EE + 
Sbjct: 345 LLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKR 404

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E E  EE  E   E  E+ +EE +E EA
Sbjct: 405 EIESLEERLERLSERLEDLKEELKELEA 432

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 35/89 (39%), Positives = 43/89 (48%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +E   EE E+   E EE +EE EE+     EE EE  E   EE  E E E  E   E EE
Sbjct: 342 RETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEE 401

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            + E E  EE  E   E  E+ +EE + L
Sbjct: 402 LKREIESLEERLERLSERLEDLKEELKEL 430

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 36/89 (40%), Positives = 43/89 (48%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
             E EE +EE EE+     EE EE  E   EE  E E E  E   E EE + E E  EE 
Sbjct: 353 LAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEER 412

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            E   E  E+ +EE +E E E EE +  L
Sbjct: 413 LERLSERLEDLKEELKELEAELEELQTEL 441

Length = 1163

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 16/84 (19%), Positives = 46/84 (54%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
           +      + EE E++   E   + E E++E+ EE EEE+ EEE    ++ ++ ++ + ++
Sbjct: 289 DSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKK 348

Query: 249 EEEEEEGEEEEEEEEEEEEEEEEA 272
              +++  +  ++ ++ + + E++
Sbjct: 349 NGLDKDDSDSGDDSDDSDIDGEDS 372

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 43/85 (50%), Positives = 46/85 (54%)

Query: 186  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            EE+ EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  
Sbjct: 956  EEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENI 1015

Query: 246  EEEEEEEEEGEEEEEEEEEEEEEEE 270
            EE  EE +E   EE EE  EE +EE
Sbjct: 1016 EENVEEYDEENVEEVEENVEEYDEE 1040

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 43/85 (50%), Positives = 46/85 (54%)

Query: 187  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
            EE+ EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  
Sbjct: 956  EEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENI 1015

Query: 247  EEEEEEEEGEEEEEEEEEEEEEEEE 271
            EE  EE + E  EE EE  EE +EE
Sbjct: 1016 EENVEEYDEENVEEVEENVEEYDEE 1040

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 43/85 (50%), Positives = 45/85 (52%)

Query: 187  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
            EE  EE+ EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  
Sbjct: 952  EENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENV 1011

Query: 247  EEEEEEEEGEEEEEEEEEEEEEEEE 271
            EE  EE   E +EE  EE EE  EE
Sbjct: 1012 EENIEENVEEYDEENVEEVEENVEE 1036

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 41/83 (49%), Positives = 45/83 (54%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +E  EE  EE +EE  EE EE  EE  EE  EE  EE  EE EE  EE  EE  EE  EE
Sbjct: 1054 EENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEE 1113

Query: 245  EEEEEEEEEEGEEEEEEEEEEEE 267
              EE  EE + E  EE  EE +E
Sbjct: 1114 NAEENAEEYDDENPEEHNEEYDE 1136

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 43/87 (49%), Positives = 47/87 (54%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +E  EE+ EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  
Sbjct: 952  EENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENV 1011

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            EE  EE  EE +EE  EE EE  EE +
Sbjct: 1012 EENIEENVEEYDEENVEEVEENVEEYD 1038

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 43/84 (51%), Positives = 46/84 (54%)

Query: 188  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
            EE+ EE  EE+ EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  
Sbjct: 948  EEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENV 1007

Query: 248  EEEEEEEGEEEEEEEEEEEEEEEE 271
            EE  EE  EE  EE +EE  EE E
Sbjct: 1008 EENVEENIEENVEEYDEENVEEVE 1031

Length = 1136

>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 23/73 (31%), Positives = 35/73 (47%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
             E + E   +E+   E     +EE ++   E  + EE++    E    + E  EEEEEE
Sbjct: 109 SGESDLENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEE 168

Query: 251 EEEEGEEEEEEEE 263
             EE EE +E E+
Sbjct: 169 IAEEEEEVKEPED 181

Members of this family contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of pfam00520 and, less often, one copy of pfam00612. Length = 230

>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 24/73 (32%), Positives = 36/73 (49%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253
             E + E   +E+   E     +EE ++   E  + EE++    E    + E  EEEEEE
Sbjct: 109 SGESDLENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEE 168

Query: 254 EGEEEEEEEEEEE 266
             EEEEE +E E+
Sbjct: 169 IAEEEEEVKEPED 181

Members of this family contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of pfam00520 and, less often, one copy of pfam00612. Length = 230

>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM protein

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 20/96 (20%), Positives = 31/96 (32%)

Query: 168 SDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 227
           +D+   +D  +          +EE +E  E                +   E     E  +
Sbjct: 82  ADSFEKSDKESQDYSSSDSGFDEEPDEPAETAGSLRPIRSSAAAYRDINRELGSFYEYPK 141

Query: 228 EEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEE 263
            +EE+E   E EE E     E     E EE+    E
Sbjct: 142 TDEEKELLREVEELESRLATEPSPAPELEEQLALME 177

Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage [Cellular processes, DNA transformation]. Length = 410

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 25/87 (28%), Positives = 59/87 (67%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KE+E+ +EE+++++E+ +EE ++ + +EE +E+   +E+E+E+E++ EE  + EEE++ E
Sbjct: 108 KEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRE 167

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
               +   ++  +++   +++E  EEE
Sbjct: 168 RVRAKSRPKKPPKKKPPNKKKEPPEEE 194

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 23/88 (26%), Positives = 59/88 (67%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           ++E+ +EE+++++E+ +EE ++ + +EE +E+   +E+E+E+E++ EE  + EEE++ E 
Sbjct: 109 EKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRER 168

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
              +   ++  +++   +++E  EEE+ 
Sbjct: 169 VRAKSRPKKPPKKKPPNKKKEPPEEEKQ 196

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 20/43 (46%), Positives = 27/43 (62%)

Query: 230 EEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           +++  +EE +E    + +    EEE EEEEEEEEEE  EEE A
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEAA 322

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 220 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEE 260
           +++  +EE +E    + +    EEEEEEEEEEEEE   EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 224 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEE 265
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|235285 PRK04335, PRK04335, cell division protein ZipA; Provisional

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 28/82 (34%), Positives = 42/82 (51%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
             E EEEE++ E+EE     + + + + E+ E + EE  +EE  EE E    +    E +
Sbjct: 95  GGELEEEEDKFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEPEPVAAKVPMAEVQ 154

Query: 246 EEEEEEEEEGEEEEEEEEEEEE 267
            EEE E E  E EE + E E +
Sbjct: 155 PEEETEIEVDEPEEPKPEPELD 176

Length = 313

>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated

 Score = 40.5 bits (96), Expect = 6e-04
 Identities = 20/86 (23%), Positives = 47/86 (54%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
           + +   EE+      E EE +++E+EEEEE+E ++    +E E  E+  E+ +   ++ +
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLEKFKALAKQYK 232

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEE 269
           +  + +E++ EG   + ++  +  E+
Sbjct: 233 KLRKAQEKKVEGRLAQHKKYAKLREK 258

Length = 619

>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 27/80 (33%), Positives = 42/80 (52%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
           E EEE  +++E+   E+ E+EE   + E EE        E EE  +E + E E EE   +
Sbjct: 590 EGEEELIQDDEKGNFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETEREENARK 649

Query: 250 EEEEEGEEEEEEEEEEEEEE 269
           +EE  G  E EE  + E+++
Sbjct: 650 KEELRGNFELEERGDPEKKD 669

Length = 1077

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 31/66 (46%), Positives = 38/66 (57%)

Query: 213 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            EE+ E+ EEE EE E EE  E+E EEE  EEE E E  +EE  +  E E + +E EE  
Sbjct: 1   MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEERY 60

Query: 273 LWGYAD 278
           L   AD
Sbjct: 61  LRLQAD 66

Length = 191

>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 22/79 (27%), Positives = 37/79 (46%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
           EE+E +   ++++  + ++  ++   E E++  E   E   E++  E      EE    E
Sbjct: 108 EEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAE 167

Query: 249 EEEEEEGEEEEEEEEEEEE 267
           EEE EE   EE   EE  E
Sbjct: 168 EEEAEEAPAEEAPAEESAE 186

Length = 186

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 22/58 (37%), Positives = 39/58 (67%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
           K  EEEEE+  +  EEE +EE +E++EE+++EE E +  +   EE+ + EE+E +++ 
Sbjct: 263 KTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 16/89 (17%), Positives = 51/89 (57%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
           + ++  +++ +E  ++++E +   +  +    +E+++  E ++ E E+ + E ++ +EE 
Sbjct: 238 FAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEA 297

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            + ++ +  +  +E +  E+E E++E EA
Sbjct: 298 LKAKDHKAFDLKQESKASEKEAEDKELEA 326

This family consists of several Borrelia P83/P100 antigen proteins. Length = 489

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 14/88 (15%), Positives = 40/88 (45%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
             +E++++ EE  ++   ++++ EE   +     + + E E +      ++   E +++ 
Sbjct: 112 AAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKA 171

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E E  ++     +++ E E   +   EA
Sbjct: 172 EAEAAKKAAAEAKKKAEAEAAAKAAAEA 199

Length = 387

>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

 Score = 40.8 bits (95), Expect = 7e-04
 Identities = 20/70 (28%), Positives = 35/70 (50%)

Query: 172 GSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 231
           GS D          E E   ++E +E +E+EE +E  E+  E+E E +  +EE+ E+ +E
Sbjct: 926 GSDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDE 985

Query: 232 EEEEEEEEEE 241
            E +   +  
Sbjct: 986 LESKAAYDSR 995

Length = 1001

>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 20/70 (28%), Positives = 42/70 (60%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +  EEE+EEE E        + +++E   E+E+E+EE++EE E   + E  + E+   +E
Sbjct: 8   QANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKARLKE 67

Query: 245 EEEEEEEEEE 254
            ++++++E +
Sbjct: 68  LKKQKKQEIQ 77

Length = 1033

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 35/90 (38%), Positives = 43/90 (47%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            +E E+   E EE +EE EE+     EE EE  E   EE  E E E  E   E EE + E
Sbjct: 346 LEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKRE 405

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            E  EE  E   E  E+ +EE +E E E  
Sbjct: 406 IESLEERLERLSERLEDLKEELKELEAELE 435

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 38/90 (42%), Positives = 44/90 (48%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KEE EE+     EE EE  E   EE  E E E  E   E EE + E E  EE  E   E 
Sbjct: 360 KEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSER 419

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEALW 274
            E+ +EE +E E E EE + E EE  E L 
Sbjct: 420 LEDLKEELKELEAELEELQTELEELNEELE 449

Length = 1163

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 21/88 (23%), Positives = 53/88 (60%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            ++ EE++++ EE + ++  E + + E E E++ +EE +++ EEE + +   E +++  E
Sbjct: 111 AKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAE 170

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            +++ E E + + E + + + EE + +A
Sbjct: 171 AKKKAEAEAKAKAEAKAKAKAEEAKAKA 198

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|220102 pfam09073, BUD22, BUD22

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 22/86 (25%), Positives = 52/86 (60%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E + ++ + +++ ++ +++E +E  ++++EEE E E+E + EE  E++ ++EEEE+ + E
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSE 202

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
           +  + +    +  +EEE EE      
Sbjct: 203 DYSQYDGMLVDSSDEEEGEEAPSINY 228

BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal. More recently it has been shown to be involved in ribosome biogenesis. Length = 424

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 44/92 (47%), Positives = 49/92 (53%)

Query: 187  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
            EE+ EE  EE+ EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  
Sbjct: 948  EEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENV 1007

Query: 247  EEEEEEEEGEEEEEEEEEEEEEEEEALWGYAD 278
            EE  EE   E  EE +EE  EE EE +  Y +
Sbjct: 1008 EENVEENIEENVEEYDEENVEEVEENVEEYDE 1039

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 44/87 (50%), Positives = 48/87 (55%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +E  EE  EE  EE  EE  EE  EE  EE  EE +EE  EE EE  EE +EE  EE EE
Sbjct: 988  EENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEE 1047

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
              EE  EE   E  EE +EE  EE EE
Sbjct: 1048 NAEENVEENIEENIEEYDEENVEEIEE 1074

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 40.5 bits (94), Expect = 7e-04
 Identities = 44/88 (50%), Positives = 48/88 (54%)

Query: 186  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            EE  EE  EE  EE +EE  EE EE  EE +EE  EE EE  EE  EE  EE  EE +EE
Sbjct: 1008 EENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEE 1067

Query: 246  EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
              EE EE   E  EE  EE  EE  E +
Sbjct: 1068 NVEEIEENIEENIEENVEENVEENVEEI 1095

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 40.5 bits (94), Expect = 7e-04
 Identities = 44/87 (50%), Positives = 48/87 (55%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +E  EE  EE  EE  EE  EE  EE  EE +EE  EE EE  EE +EE  EE EE  EE
Sbjct: 992  EENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEE 1051

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
              EE  EE   E +EE  EE EE  EE
Sbjct: 1052 NVEENIEENIEEYDEENVEEIEENIEE 1078

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 40.5 bits (94), Expect = 7e-04
 Identities = 44/87 (50%), Positives = 48/87 (55%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +E  EE  EE  EE  EE +EE  EE EE  EE +EE  EE EE  EE  EE  EE  EE
Sbjct: 1004 EENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEE 1063

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
             +EE  EE E   EE  EE  EE  EE
Sbjct: 1064 YDEENVEEIEENIEENIEENVEENVEE 1090

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 40.5 bits (94), Expect = 7e-04
 Identities = 44/87 (50%), Positives = 48/87 (55%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +E  EE  EE  EE  EE  EE +EE  EE EE  EE +EE  EE EE  EE  EE  EE
Sbjct: 1000 EENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEE 1059

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
              EE +EE   E EE  EE  EE  EE
Sbjct: 1060 NIEEYDEENVEEIEENIEENIEENVEE 1086

Length = 1136

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 40.5 bits (96), Expect = 7e-04
 Identities = 29/89 (32%), Positives = 53/89 (59%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +E ++E E  ++E   E +EE  +   E E+E  E   E ++ E+   ++EE  + + E 
Sbjct: 45  EEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLEL 104

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            E+ EEE E+ E+E E++++E E++EE L
Sbjct: 105 LEKREEELEKKEKELEQKQQELEKKEEEL 133

Length = 520

>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 24/73 (32%), Positives = 36/73 (49%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254
             E + E   +E+   E     +EE ++   E  + EE++    E    + E  EEEEEE
Sbjct: 109 SGESDLENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEE 168

Query: 255 GEEEEEEEEEEEE 267
             EEEEE +E E+
Sbjct: 169 IAEEEEEVKEPED 181

Members of this family contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of pfam00520 and, less often, one copy of pfam00612. Length = 230

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 35/82 (42%), Positives = 53/82 (64%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            +EEE EE ++ EE+ E E +EEEE EEE E+++EEEE +E EE+  +E+EE E+ +   
Sbjct: 23  AEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSF 82

Query: 244 EEEEEEEEEEEGEEEEEEEEEE 265
             EEE  ++   +EE  E  E+
Sbjct: 83  VVEEEGTDKLSADEESNELLED 104

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 32/81 (39%), Positives = 41/81 (50%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            E E  ++     +   E++E   E    E+ EEEE EE EE+EEEE EEE EE E   +
Sbjct: 48  AEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGD 107

Query: 245 EEEEEEEEEEGEEEEEEEEEE 265
             EE  E  E  EE EE  + 
Sbjct: 108 TPEELTEASEQLEEHEEGFQA 128

Length = 306

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 23/87 (26%), Positives = 58/87 (66%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           ++E+E+ +EE+++++E+ +EE ++ + +EE +E+   +E+E+E+E++ EE  + EEE++ 
Sbjct: 107 EKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKR 166

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           E    +   +   +++   +++E  EE
Sbjct: 167 ERVRAKSRPKKPPKKKPPNKKKEPPEE 193

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 23/88 (26%), Positives = 58/88 (65%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           + +EE+++++E+ +EE ++ + +EE +E+   +E+E+E+E++ EE  + EEE++ E    
Sbjct: 112 QVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRA 171

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           +   ++  ++    +++E  EEE++ +A
Sbjct: 172 KSRPKKPPKKKPPNKKKEPPEEEKQRQA 199

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 25/83 (30%), Positives = 56/83 (67%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
            +E + E  +EEE+E+E+ +EE+++++E+ +EE ++ + +EE +E+   +E+E+E+E++ 
Sbjct: 95  AKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKV 154

Query: 250 EEEEEGEEEEEEEEEEEEEEEEA 272
           EE  + EEE++ E    +   + 
Sbjct: 155 EEPRDREEEKKRERVRAKSRPKK 177

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]

 Score = 40.8 bits (95), Expect = 7e-04
 Identities = 21/87 (24%), Positives = 49/87 (56%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           + + E++ ++ E +  E++  +   ++E + +  ++E+ + E  +E ++EE  +E     
Sbjct: 698 RPDVEDDSDDSELDFAEDDFSDSTSDDEPKLDAIDDEDAKSEGSQESDQEEGLDEIFYSF 757

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           + E++  +   E  EE+E  EEE+EEE
Sbjct: 758 DGEQDNSDSFAESSEEDESSEEEKEEE 784

Length = 821

>gnl|CDD|235285 PRK04335, PRK04335, cell division protein ZipA; Provisional

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 28/82 (34%), Positives = 43/82 (52%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
             E EEEE++ E+EE     + + + + E+ E + EE  +EE  EE E    +    E +
Sbjct: 95  GGELEEEEDKFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEPEPVAAKVPMAEVQ 154

Query: 247 EEEEEEEEGEEEEEEEEEEEEE 268
            EEE E E +E EE + E E +
Sbjct: 155 PEEETEIEVDEPEEPKPEPELD 176

Length = 313

>gnl|CDD|235285 PRK04335, PRK04335, cell division protein ZipA; Provisional

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 27/82 (32%), Positives = 42/82 (51%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
             E EEEE++ E+EE     + + + + E+ E + EE  +EE  EE E    +    E +
Sbjct: 95  GGELEEEEDKFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEPEPVAAKVPMAEVQ 154

Query: 248 EEEEEEEGEEEEEEEEEEEEEE 269
            EEE E   +E EE + E E +
Sbjct: 155 PEEETEIEVDEPEEPKPEPELD 176

Length = 313

>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2)

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 21/87 (24%), Positives = 43/87 (49%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K +  +E EE  E +    E E  +E E+   +E EE+      EEE++ ++ + E ++ 
Sbjct: 677 KSQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQDI 736

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
             EE E  E     E+   + ++++++
Sbjct: 737 SLEELEALEANLLAEQNSLKAQKQQQK 763

All proteins in this family for which functions are known are flap endonucleases that generate the 3' incision next to DNA damage as part of nucleotide excision repair. This family is related to many other flap endonuclease families including the fen1 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1034

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 21/88 (23%), Positives = 54/88 (61%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K++EE+  EE + ++  E+E  ++ E+E  + +E++++ EE E++ + E++++EE+  + 
Sbjct: 82  KKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKA 141

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
             E++++ E  + +   E  + +   EA
Sbjct: 142 AAEQKKKAEAAKAKAAAEAAKLKAAAEA 169

Length = 387

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 201 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEE 260
           ++EEE+ + + EE EE+EEE E+ E+  +EE+EE EE EEE     +      +   +E 
Sbjct: 18  KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQET 77

Query: 261 EE 262
             
Sbjct: 78  IS 79

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 205 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEE 264
           ++EEE+ + + EE EE+EEE E+ E+  +EE+EE EE EEE     +      +   +E 
Sbjct: 18  KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQET 77

Query: 265 EE 266
             
Sbjct: 78  IS 79

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional

 Score = 39.4 bits (92), Expect = 7e-04
 Identities = 20/70 (28%), Positives = 32/70 (45%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K+++  + ++  ++   E E++  E   E   E++  E      EE    EEEE EE   
Sbjct: 117 KKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPA 176

Query: 245 EEEEEEEEEE 254
           EE   EE  E
Sbjct: 177 EEAPAEESAE 186

Length = 186

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 39.8 bits (94), Expect = 7e-04
 Identities = 22/34 (64%), Positives = 24/34 (70%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 218
           ++    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 225 RQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor [Transcription]

 Score = 40.5 bits (94), Expect = 7e-04
 Identities = 33/113 (29%), Positives = 53/113 (46%)

Query: 157 VMTDEANSCNVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 216
           V+ DE         S   +              ++E++  EEE EE   EE+ +    E 
Sbjct: 225 VLKDEKELARQERVSSWENFKEEPGEPLSRPALKKEKQGAEEEGEEGMSEEDLDVGAAEI 284

Query: 217 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEE 269
           E +E  E ++E+++EE E  E  +EE + +  +E  EE EE++E EE E   E
Sbjct: 285 ENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTE 337

Length = 392

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 13/82 (15%), Positives = 38/82 (46%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
             E   EE + E E  EE+ +   E E   E    + +E+ + E++ ++ + + + + + 
Sbjct: 48  VLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKP 107

Query: 252 EEEGEEEEEEEEEEEEEEEEAL 273
           + + + + + ++   +   +A 
Sbjct: 108 KPKVKPQPKPKKPPSKTAAKAP 129

Length = 244

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 40.3 bits (94), Expect = 8e-04
 Identities = 13/82 (15%), Positives = 19/82 (23%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
               +     E+   + E + E  EE    E+EE  +        E             E
Sbjct: 53  TSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAE 112

Query: 250 EEEEEGEEEEEEEEEEEEEEEE 271
           E       E       E     
Sbjct: 113 ELASGLSPENTSGSSPESPASH 134

Length = 413

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 19/91 (20%), Positives = 30/91 (32%)

Query: 182 PFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
           P  + ++ + EE+ E EE + +    E       E        E   E  EE     E +
Sbjct: 846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQ 905

Query: 242 EEEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            EE    E    E       E+ +   E + 
Sbjct: 906 PEEVVVVETTHPEVIAAPVTEQPQVITESDV 936

Length = 1068

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 40/86 (46%), Positives = 47/86 (54%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EE + E EE  EE EE +EE  E +EE EE E E     E  EE E E EE EE  EE +
Sbjct: 270 EELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELK 329

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
           E+ E  +EE EE E   EE E+   E
Sbjct: 330 EKIEALKEELEERETLLEELEQLLAE 355

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 36/89 (40%), Positives = 43/89 (48%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            E+   E EE +EE EE+     EE EE  E   EE  E E E  E   E EE + E E 
Sbjct: 349 LEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIES 408

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            EE  E   E  E+ +EE +E E E E L
Sbjct: 409 LEERLERLSERLEDLKEELKELEAELEEL 437

Length = 1163

>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed

 Score = 40.2 bits (95), Expect = 8e-04
 Identities = 25/65 (38%), Positives = 37/65 (56%)

Query: 180 MMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 239
           ++P  +  EEE   EE   EE+EE   E E  ++EE EEE+ EEE + E+  +   E  +
Sbjct: 465 LLPEEELAEEEAAAEEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRLRELAK 524

Query: 240 EEEEE 244
           E+ EE
Sbjct: 525 EDPEE 529

Length = 542

>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 23/75 (30%), Positives = 35/75 (46%)

Query: 200 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEE 259
             E + E   +E+   E     +EE ++   E  + EE++    E    + E  E EEEE
Sbjct: 109 SGESDLENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEE 168

Query: 260 EEEEEEEEEEEEALW 274
             EEEEE +E E  +
Sbjct: 169 IAEEEEEVKEPEDCF 183

Members of this family contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of pfam00520 and, less often, one copy of pfam00612. Length = 230

>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 23/73 (31%), Positives = 35/73 (47%)

Query: 197 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGE 256
             E + E   +E+   E     +EE ++   E  + EE++    E    + E  EEEE E
Sbjct: 109 SGESDLENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEE 168

Query: 257 EEEEEEEEEEEEE 269
             EEEEE +E E+
Sbjct: 169 IAEEEEEVKEPED 181

Members of this family contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of pfam00520 and, less often, one copy of pfam00612. Length = 230

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 37/87 (42%), Positives = 56/87 (64%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            ++ E EEEE EE ++ EE+ E E +EEEE EEE E+++EEEE +E EE+  +E+EE E+
Sbjct: 18  RQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEK 77

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEE 270
            +     EEE  ++   +EE  E  E+
Sbjct: 78  LKSSFVVEEEGTDKLSADEESNELLED 104

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 39.8 bits (94), Expect = 8e-04
 Identities = 20/46 (43%), Positives = 27/46 (58%)

Query: 228 EEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           +++  +EE +E    + +    EEEEE EEEEEEEE  EEE    L
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEAAAGL 325

Length = 330

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 34/89 (38%), Positives = 46/89 (51%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            E++++   E     E + EE E + EE E + +E  EE  E EE+ EE +EE E  E E
Sbjct: 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE 359

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            EE E E EE E   EE EE+ E     +
Sbjct: 360 LEELEAELEELESRLEELEEQLETLRSKV 388

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 24/82 (29%), Positives = 40/82 (48%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
           EEE   +  EE ++   +E      EE  E+  E+ E+  E +EE ++E  ++ ++  E 
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEV 503

Query: 252 EEEGEEEEEEEEEEEEEEEEAL 273
           +     EE    EE  E+ EAL
Sbjct: 504 DTYLLLEELGINEETYEKLEAL 525

Length = 819

>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740)

 Score = 40.4 bits (94), Expect = 8e-04
 Identities = 27/79 (34%), Positives = 40/79 (50%)

Query: 173 STDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 232
           S DV +    +    +++EE         E + E  +    +   EEEEE E EE+EE  
Sbjct: 96  SCDVRSRSTLWSLFHDDDEENLPSSIAPPEIDPEPRKPIVPDLVLEEEEEVEMEEDEEYY 155

Query: 233 EEEEEEEEEEEEEEEEEEE 251
           E+E  +  +E+ EEEEEEE
Sbjct: 156 EKEPGKVVDEKSEEEEEEE 174

This family consists of several uncharacterized plant proteins of unknown function. Length = 565

>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 22/107 (20%), Positives = 46/107 (42%), Gaps = 17/107 (15%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
                 + EE     EE E   EE++  ++E + E  E +E EEE +   E + E  E +
Sbjct: 819 LKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKNEFVEFK 878

Query: 243 EEE-----------------EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            +                     +E +++ +  ++++++ E+ +EEA
Sbjct: 879 NDPKKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEKTDEEA 925

Length = 925

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 31/67 (46%), Positives = 44/67 (65%)

Query: 206 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEE 265
           EEE EE+E        EEEE++EE E EEEEEEEE + + ++ E++E E ++EEE E+E 
Sbjct: 19  EEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKEL 78

Query: 266 EEEEEEA 272
           + EE   
Sbjct: 79  QREERLK 85

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 31/67 (46%), Positives = 45/67 (67%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EEE EE+E        EEEE++EE E EEEEEEEE + + ++ E++E E ++EEE E+E 
Sbjct: 19  EEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKEL 78

Query: 246 EEEEEEE 252
           + EE  +
Sbjct: 79  QREERLK 85

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 31/67 (46%), Positives = 45/67 (67%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           EEE EE+E        EEEE++EE E EEEEEEEE + + ++ E++E E ++EEE E+E 
Sbjct: 19  EEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKEL 78

Query: 247 EEEEEEE 253
           + EE  +
Sbjct: 79  QREERLK 85

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 31/67 (46%), Positives = 45/67 (67%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           EEE EE+E        EEEE++EE E EEEEEEEE + + ++ E++E E ++EEE E+E 
Sbjct: 19  EEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKEL 78

Query: 248 EEEEEEE 254
           + EE  +
Sbjct: 79  QREERLK 85

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

 Score = 40.5 bits (94), Expect = 8e-04
 Identities = 27/100 (27%), Positives = 47/100 (47%)

Query: 172 GSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 231
            + D +       +++E+   E+ E+EE   + E EE        E EE  +E + E E 
Sbjct: 584 ATLDSIEGEEELIQDDEKGNFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETER 643

Query: 232 EEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           EE   ++EE     E EE  + E ++ +   EE+ + EE+
Sbjct: 644 EENARKKEELRGNFELEERGDPEKKDVDWYTEEKRKIEEQ 683

Length = 1077

>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein

 Score = 40.4 bits (94), Expect = 8e-04
 Identities = 17/88 (19%), Positives = 50/88 (56%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           ++E  ++++E +   +  +    +E+++  E ++ E E+ + E ++ +EE  + ++ +  
Sbjct: 247 RDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAF 306

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           + ++E +  E E E++E E +++ E  A
Sbjct: 307 DLKQESKASEKEAEDKELEAQKKREPVA 334

This family consists of several Borrelia P83/P100 antigen proteins. Length = 489

>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 34/92 (36%), Positives = 50/92 (54%)

Query: 182 PFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
             +K    +E+E   EEEEE+ E+  EE  +E +E  EE EE+  E  E  EEE +EE  
Sbjct: 25  YRFKVLSIKEKERLREEEEEQVEQLREEANDEAKEIIEEAEEDAFEIVEAAEEEAKEELL 84

Query: 242 EEEEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           ++ +E     E+   + E E+EE EEE E  +
Sbjct: 85  KKTDEASSIIEKLQMQIEREQEEWEEELERLI 116

Length = 281

>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572)

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 27/88 (30%), Positives = 46/88 (52%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           ++ +EE+EE  E+E EEE   +  ++ E    + + E E  E  EE +E +    + +  
Sbjct: 111 DKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLERLEELKELQSRRADVDVN 170

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
              E      ++EEEEEEEE+E   ++L
Sbjct: 171 SMLEALFRREKKEEEEEEEEDEALIKSL 198

Family of eukaryotic proteins with undetermined function. Length = 321

>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit

 Score = 40.3 bits (94), Expect = 9e-04
 Identities = 20/73 (27%), Positives = 34/73 (46%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            E E+EE+ E E E +E    +E E  + E E  EEE  + ++++  +E +++ E   E 
Sbjct: 221 TENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDSETPGEG 280

Query: 245 EEEEEEEEEEGEE 257
                     G E
Sbjct: 281 ARPARPFTSTGGE 293

This model describes Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit that functions in cobalamin biosynthesis. Cobalamin (vitamin B12) can be synthesized via several pathways, including an aerobic pathway (found in Pseudomonas denitrificans) and an anaerobic pathway (found in P. shermanii and Salmonella typhimurium). These pathways differ in the point of cobalt insertion during corrin ring formation. There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction. Confusion regarding the functions of enzymes found in the aerobic vs. anaerobic pathways has arisen because nonhomologous genes in these different pathways were given the same gene symbols. Thus, cobT in the aerobic pathway (P. denitrificans) is not a homolog of cobT in the anaerobic pathway (S. typhimurium). It should be noted that E. coli synthesizes cobalamin only when it is supplied with the precursor cobinamide, which is a complex intermediate. Additionally, all E. coli cobalamin synthesis genes (cobU, cobS and cobT) were named after their Salmonella typhimurium homologs which function in the anaerobic cobalamin synthesis pathway. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 600

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.5 bits (95), Expect = 9e-04
 Identities = 44/87 (50%), Positives = 53/87 (60%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EE + E    EEE E+ +   EE EEE EE EEE EE +E  EE EEE E  EE   + +
Sbjct: 719 EELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLK 778

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           EE EE EE+ +  +EE EE EEE EEA
Sbjct: 779 EEIEELEEKRQALQEELEELEEELEEA 805

Length = 1163

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 40.5 bits (94), Expect = 9e-04
 Identities = 44/87 (50%), Positives = 48/87 (55%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +E  EE  EE  EE +EE  EE EE  EE +EE  EE EE  EE  EE  EE  EE +EE
Sbjct: 1008 EENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEE 1067

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
              EE EE  E   EE  EE  EE  EE
Sbjct: 1068 NVEEIEENIEENIEENVEENVEENVEE 1094

Length = 1136

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 40.3 bits (94), Expect = 9e-04
 Identities = 26/96 (27%), Positives = 57/96 (59%)

Query: 176 VLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 235
           V          + +  +E + E  +EEE+E+E+ +EE+++++E+ +EE ++ + +EE +E
Sbjct: 80  VEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKE 139

Query: 236 EEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           +   +E+E+E+E++ EE    EEE++ E    +   
Sbjct: 140 KRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRP 175

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 39.8 bits (93), Expect = 9e-04
 Identities = 20/45 (44%), Positives = 30/45 (66%)

Query: 228 EEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            ++  E+EE E++  +E+EE+E   EE E E  EEEE+EE E +A
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEVKA 75

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional

 Score = 39.4 bits (92), Expect = 9e-04
 Identities = 26/77 (33%), Positives = 46/77 (59%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            + ++ + E  EE+  +E E +EE++ +EE+ E EE E+EE  E+ EE  E + EE ++E
Sbjct: 3   KECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDE 62

Query: 244 EEEEEEEEEEEGEEEEE 260
             + +EE ++   E E 
Sbjct: 63  NNKLKEENKKLENELEA 79

Length = 211

>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2)

 Score = 40.3 bits (94), Expect = 9e-04
 Identities = 21/88 (23%), Positives = 38/88 (43%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           +      E +   + +  +E EE  E +    E E  +E E+   +E EE+      EEE
Sbjct: 664 DSVSSTLELQVPSKSQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEE 723

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           ++ ++ + E ++   EE E  E    A 
Sbjct: 724 KDADDFKNEWQDISLEELEALEANLLAE 751

All proteins in this family for which functions are known are flap endonucleases that generate the 3' incision next to DNA damage as part of nucleotide excision repair. This family is related to many other flap endonuclease families including the fen1 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1034

>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated

 Score = 40.5 bits (95), Expect = 9e-04
 Identities = 23/83 (27%), Positives = 39/83 (46%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
           EEE   +  EE ++   +E      EE  E+  E+ E+  E +EE ++E  ++ ++  E 
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEV 503

Query: 251 EEEEGEEEEEEEEEEEEEEEEAL 273
           +     EE    EE  E+ E  L
Sbjct: 504 DTYLLLEELGINEETYEKLEALL 526

Length = 819

>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 3/117 (2%)

Query: 157 VMTDEANSCNVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 216
           V+    N+ N       T++L+         +  +  +E  ++  E EEE  +    + E
Sbjct: 771 VIVSLFNNPNAEKILIITEILSDG---INNSDINDRPQELIDQIIESEEERLKALRIQRE 827

Query: 217 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E     EE E   EE++  ++E + E  E +E EEE +   E + E  E + + + L
Sbjct: 828 EMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKNEFVEFKNDPKKL 884

Length = 925

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 12/46 (26%), Positives = 30/46 (65%)

Query: 212 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEE 257
           ++ ++EEEE    +E++++E++  + ++++EEE + E E     +E
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKE 268

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 11/100 (11%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEE-----------EEEEEEEEEEEEEEEEEEEEEEEEEE 233
           +EEE E+EEEEEE E +   EEE           EE EE+ E    E        E ++ 
Sbjct: 463 EEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSEGQQP 522

Query: 234 EEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
                + E  +EE  + E  + E   EE +EE   EE  L
Sbjct: 523 RGSSVQPESPQEEPLQPESMDAESVGEESDEELLAEESPL 562

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 11/106 (10%)

Query: 186  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            EE  +E EE  E+  + +EE E+ E  E++  +   + + +      E +EE  ++    
Sbjct: 4068 EENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFASAEADEENTDKGIVG 4127

Query: 246  EEEEEEEEEG-----------EEEEEEEEEEEEEEEEALWGYADMG 280
            E EE  EE+G           E+ +E+    +E   EA   Y  +G
Sbjct: 4128 ENEELGEEDGVRGNGTADGEFEQVQEDTSTPKEAMSEADRQYQSLG 4173

Length = 4600

>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 21/83 (25%), Positives = 44/83 (53%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
           E++  E+ +    E ++++       +     +  EE  ++  EE+ +EE+ ++++ +  
Sbjct: 185 EDKAGEDLDGLAAEIDDQQAFARVVRDMLGSMDMAEETGDDGIEEDADEEDGDDDQPDNN 244

Query: 250 EEEEEGEEEEEEEEEEEEEEEEA 272
           E+ E G EE E  +E EE+E EA
Sbjct: 245 EDSEAGREESEGSDESEEDEAEA 267

Length = 620

>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 17/63 (26%), Positives = 34/63 (53%)

Query: 218 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEALWGYA 277
           +  EE  +E E  + E+ E+E++ +E+E++++ EEEE    +   E+ +   EE   G  
Sbjct: 207 DMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEM 266

Query: 278 DMG 280
           +  
Sbjct: 267 EAA 269

This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 33/87 (37%), Positives = 62/87 (71%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            K+E EE+++ EE ++ EEE + + EE ++E EE++++ EE +++EEE+++    ++EEE+
Sbjct: 1709 KKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEK 1768

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            + EE  +E+E   EEE +EE+E+   E
Sbjct: 1769 KAEEIRKEKEAVIEEELDEEDEKRRME 1795

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 29/86 (33%), Positives = 58/86 (67%)

Query: 186  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            EE   EE  +  EEE++ + EE ++ EE + + EE ++ EEE+++ E+ +++E EE+++ 
Sbjct: 1590 EEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA 1649

Query: 246  EEEEEEEEEGEEEEEEEEEEEEEEEE 271
            EE ++ EEE + +  EE ++ EE+++
Sbjct: 1650 EELKKAEEENKIKAAEEAKKAEEDKK 1675

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.7 bits (92), Expect = 0.001
 Identities = 31/89 (34%), Positives = 62/89 (69%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            + EE ++ EE +++E EE+++ EE ++ EEE + + EE ++E EE++++ EE +++EEE+
Sbjct: 1697 EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEK 1756

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            ++    ++EE ++ EE  +E+E   EE L
Sbjct: 1757 KKIAHLKKEEEKKAEEIRKEKEAVIEEEL 1785

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.7 bits (92), Expect = 0.001
 Identities = 29/88 (32%), Positives = 59/88 (67%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +E   EE  +  EEE++ + EE ++ EE + + EE ++ EEE+++ E+ +++E EE+++ 
Sbjct: 1590 EEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA 1649

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            EE ++ EEE   +  EE ++ EE++++A
Sbjct: 1650 EELKKAEEENKIKAAEEAKKAEEDKKKA 1677

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.7 bits (92), Expect = 0.001
 Identities = 28/89 (31%), Positives = 57/89 (64%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
               EE  +  EEE++ + EE ++ EE + + EE ++ EEE+++ E+ +++E EE+++ EE
Sbjct: 1592 ARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEE 1651

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
             ++ EEE +    EE ++ EE++++ E  
Sbjct: 1652 LKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.7 bits (92), Expect = 0.001
 Identities = 30/84 (35%), Positives = 61/84 (72%)

Query: 186  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            ++E EE ++ EE +++E EE+++ EE ++ EEE + + EE ++E EE++++ EE +++EE
Sbjct: 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEE 1754

Query: 246  EEEEEEEEEGEEEEEEEEEEEEEE 269
            E+++    + EEE++ EE  +E+E
Sbjct: 1755 EKKKIAHLKKEEEKKAEEIRKEKE 1778

Length = 2084

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 22/72 (30%), Positives = 44/72 (61%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K+  +EEE+EE+EEE+ +   + + ++  + + EE+E+ + E+EE+   E EE+  E+E 
Sbjct: 34  KDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDEL 93

Query: 245 EEEEEEEEEEGE 256
            E+    + + E
Sbjct: 94  AEKLRLRKLQEE 105

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 18/86 (20%), Positives = 42/86 (48%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           E  E  EE      + +++  E  E ++ E  E+   ++E+++    E +    +E+ + 
Sbjct: 631 EGRENREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQA 690

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEEA 272
           ++E +    EE+  +E E+EE  ++ 
Sbjct: 691 QQEAKALNVEEQSVQETEQEERVQQV 716

Length = 1068

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 17/82 (20%), Positives = 41/82 (50%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E  EE      + +++  E  E ++ E  E+   ++E+++    E +    +E+ + ++E
Sbjct: 634 ENREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQE 693

Query: 246 EEEEEEEEEGEEEEEEEEEEEE 267
            +    EE+  +E E+EE  ++
Sbjct: 694 AKALNVEEQSVQETEQEERVQQ 715

Length = 1068

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 19/87 (21%), Positives = 29/87 (33%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           ++ + EE+ E EE + +    E       E        E   E  EE     E + EE  
Sbjct: 851 QDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVV 910

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
             E    E       E+ +   E + A
Sbjct: 911 VVETTHPEVIAAPVTEQPQVITESDVA 937

Length = 1068

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 33/88 (37%), Positives = 40/88 (45%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           + E   EE E+   E EE +EE EE+     EE EE  E   EE  E E E  E   E E
Sbjct: 341 ERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELE 400

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E + E E  E   E   E  E+ +EE  
Sbjct: 401 ELKREIESLEERLERLSERLEDLKEELK 428

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 48/90 (53%), Positives = 60/90 (66%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +E  E+E EE EEE EE EE+ +E EEE EE E+E EE +EE EE E E+EE E+E +E 
Sbjct: 823 RERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKEL 882

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEALW 274
           EEE+EE EEE  E E E  E +EE E+   
Sbjct: 883 EEEKEELEEELRELESELAELKEEIEKLRE 912

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 42/89 (47%), Positives = 50/89 (56%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           + E+E EE + E EE  EE EE +EE  E +EE EE E E     E  EE E E EE EE
Sbjct: 264 EAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEE 323

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
             EE +E+ E  +EE EE E   EE E L
Sbjct: 324 RLEELKEKIEALKEELEERETLLEELEQL 352

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 43/90 (47%), Positives = 50/90 (55%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
             K E    EEE E+ +   EE EEE EE EEE EE +E  EE EEE E  EE   + +E
Sbjct: 720 ELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKE 779

Query: 243 EEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E EE EE+ +   EE EE EEE EE E   
Sbjct: 780 EIEELEEKRQALQEELEELEEELEEAERRL 809

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 42/88 (47%), Positives = 52/88 (59%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E + EE + E    EEE E+ +   EE EEE EE EEE EE +E  EE EEE E  EE  
Sbjct: 715 ERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL 774

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            + +EE EE EE+ +  +EE EE EE L
Sbjct: 775 AKLKEEIEELEEKRQALQEELEELEEEL 802

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 46/85 (54%), Positives = 55/85 (64%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
             E E E  E+  E  E+E EE EEE EE EE+ +E EEE EE E+E EE +EE EE E 
Sbjct: 811 ALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEA 870

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEE 270
           E+EE E+E  E EEE+EE EEE  E
Sbjct: 871 EKEELEDELKELEEEKEELEEELRE 895

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 49/90 (54%), Positives = 60/90 (66%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
             E+E EE EEE EE EE+ +E EEE EE E+E EE +EE EE E E+EE E+E +E EE
Sbjct: 825 RLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEE 884

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E+EE EEE  E E E  E +EE E+  E L
Sbjct: 885 EKEELEEELRELESELAELKEEIEKLRERL 914

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 41/90 (45%), Positives = 48/90 (53%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KE EE + E EE  EE EE +EE  E +EE EE E E     E  EE E E EE EE  E
Sbjct: 267 KEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLE 326

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEALW 274
           E +E+ E  + E EE E   EE E+  A  
Sbjct: 327 ELKEKIEALKEELEERETLLEELEQLLAEL 356

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 35/87 (40%), Positives = 41/87 (47%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
              E EE +EE EE+     EE EE  E   EE  E E E  E   E EE + E E  EE
Sbjct: 352 LLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEE 411

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
             E   E  E  +EE +E E E EE +
Sbjct: 412 RLERLSERLEDLKEELKELEAELEELQ 438

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 39/89 (43%), Positives = 47/89 (52%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +EE  E +EE EE E E     E  EE E E EE EE  EE +E+ E  +EE EE E  
Sbjct: 286 LQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETL 345

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            EE E+   E EE +EE EE+     E L
Sbjct: 346 LEELEQLLAELEEAKEELEEKLSALLEEL 374

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 44/90 (48%), Positives = 53/90 (58%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            EE +EE EE E E+EE E+E +E EEE+EE EEE  E E E  E +EE E+  E  EE 
Sbjct: 858 LEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEEL 917

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEALW 274
           E + E  E E  E EEE EEE E+  E   
Sbjct: 918 EAKLERLEVELPELEEELEEEYEDTLETEL 947

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 38/88 (43%), Positives = 46/88 (52%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            +EE  E +EE EE E E     E  EE E E EE EE  EE +E+ E  +EE EE E  
Sbjct: 286 LQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETL 345

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            EE E+   E  E +EE EE+     EE
Sbjct: 346 LEELEQLLAELEEAKEELEEKLSALLEE 373

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 40/88 (45%), Positives = 49/88 (55%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E+  EE   + EE E + EE + E    EEE E+ +   EE EEE EE EEE EE +E  
Sbjct: 701 EDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERL 760

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           EE EEE E  EE   + +EE EE EE  
Sbjct: 761 EELEEELESLEEALAKLKEEIEELEEKR 788

Length = 1163

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 17/56 (30%), Positives = 43/56 (76%)

Query: 225 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEALWGYADMG 280
           +E EEE  EEE+++EE+++++++E+E++++ +++E++E+E++++        AD G
Sbjct: 43  KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDG 98

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 23/71 (32%), Positives = 42/71 (59%)

Query: 208 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEE 267
           E+ +E  +EE E+E + E++ +E E  EE++ E+   E    +E  EG  EE +++ EEE
Sbjct: 193 EDHQELLQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEE 252

Query: 268 EEEEALWGYAD 278
            ++E+ W   +
Sbjct: 253 SDDESAWEGFE 263

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 20/87 (22%), Positives = 41/87 (47%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
             K   E    +E  E   EE +++ EEE ++E   E  E E E   +    + + + + 
Sbjct: 224 LEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQR 283

Query: 243 EEEEEEEEEEEEGEEEEEEEEEEEEEE 269
            +E+  +E E E +EE++ +++  +  
Sbjct: 284 NKEKRRKELEREAKEEKQLKKKLAQLA 310

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 21/88 (23%), Positives = 53/88 (60%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +  ++ EE++++ EE + ++  E + + E E E++ +EE +++ EEE + +   E +++ 
Sbjct: 109 QAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKA 168

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            E +++ E E + + E + + + EE +A
Sbjct: 169 AEAKKKAEAEAKAKAEAKAKAKAEEAKA 196

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 23/95 (24%), Positives = 54/95 (56%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           + EE++++ EE + ++  E + + E E E++ +EE +++ EEE + +   E +++  E +
Sbjct: 113 QAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAK 172

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEALWGYADM 279
           ++ E E + + E + + + EE + + EA    A  
Sbjct: 173 KKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAA 207

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 40.2 bits (93), Expect = 0.001
 Identities = 43/84 (51%), Positives = 46/84 (54%)

Query: 188  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
            EE  EE  EE  EE  EE  EE  EE  EE  EE  EE +EE  EE EE  EE +EE  E
Sbjct: 984  EENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVE 1043

Query: 248  EEEEEEEGEEEEEEEEEEEEEEEE 271
            E EE  E   EE  EE  EE +EE
Sbjct: 1044 EIEENAEENVEENIEENIEEYDEE 1067

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 39.8 bits (92), Expect = 0.001
 Identities = 43/87 (49%), Positives = 47/87 (54%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +E  EE  EE  EE  EE  EE  EE  EE  EE  EE +EE  EE EE  EE +EE  E
Sbjct: 984  EENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVE 1043

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            E EE  EE   E  EE  EE +EE  E
Sbjct: 1044 EIEENAEENVEENIEENIEEYDEENVE 1070

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 39.8 bits (92), Expect = 0.001
 Identities = 43/87 (49%), Positives = 46/87 (52%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +E  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE  EE +EE  EE EE  E
Sbjct: 976  EENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVE 1035

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            E +EE  EE  E  EE  EE  EE  E
Sbjct: 1036 EYDEENVEEIEENAEENVEENIEENIE 1062

Length = 1136

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 40.1 bits (95), Expect = 0.001
 Identities = 30/89 (33%), Positives = 53/89 (59%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K+E E  ++E   E +EE  +   E E+E  E   E ++ E+   ++EE  + + E  E+
Sbjct: 48  KKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEK 107

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            EEE E++E+  E++++E E++EEE E L
Sbjct: 108 REEELEKKEKELEQKQQELEKKEEELEEL 136

Length = 520

>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 23/73 (31%), Positives = 35/73 (47%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
             E + E   +E+   E     +EE ++   E  + EE++    E    + E  EEEEEE
Sbjct: 109 SGESDLENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEE 168

Query: 250 EEEEEGEEEEEEE 262
             EEE E +E E+
Sbjct: 169 IAEEEEEVKEPED 181

Members of this family contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of pfam00520 and, less often, one copy of pfam00612. Length = 230

>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 23/73 (31%), Positives = 35/73 (47%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
             E + E   +E+   E     +EE ++   E  + EE++    E    + E  EEEEEE
Sbjct: 109 SGESDLENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEE 168

Query: 253 EEGEEEEEEEEEE 265
              EEEE +E E+
Sbjct: 169 IAEEEEEVKEPED 181

Members of this family contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of pfam00520 and, less often, one copy of pfam00612. Length = 230

>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 23/73 (31%), Positives = 35/73 (47%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
             E + E   +E+   E     +EE ++   E  + EE++    E    + E  EEEEEE
Sbjct: 109 SGESDLENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEE 168

Query: 249 EEEEEEGEEEEEE 261
             EEEE  +E E+
Sbjct: 169 IAEEEEEVKEPED 181

Members of this family contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of pfam00520 and, less often, one copy of pfam00612. Length = 230

>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 23/73 (31%), Positives = 35/73 (47%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
             E + E   +E+   E     +EE ++   E  + EE++    E    + E  EEEEEE
Sbjct: 109 SGESDLENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEE 168

Query: 252 EEEGEEEEEEEEE 264
             E EEE +E E+
Sbjct: 169 IAEEEEEVKEPED 181

Members of this family contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of pfam00520 and, less often, one copy of pfam00612. Length = 230

>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM protein

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 18/87 (20%), Positives = 30/87 (34%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           +E ++    +   +EE +E  E                +   E     E  + +EE+E  
Sbjct: 90  KESQDYSSSDSGFDEEPDEPAETAGSLRPIRSSAAAYRDINRELGSFYEYPKTDEEKELL 149

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            E EE E     E     E EE+   +
Sbjct: 150 REVEELESRLATEPSPAPELEEQLALM 176

Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage [Cellular processes, DNA transformation]. Length = 410

>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 42/114 (36%), Positives = 58/114 (50%), Gaps = 2/114 (1%)

Query: 160 DEANSCNVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 219
           D  ++  +++   S D   +  PF +++E   E    E+ EEEE EE EE+EEEE EEE 
Sbjct: 40  DGDDAIELAEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEES 99

Query: 220 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EEEEEEGEEEEEEEEEEEEEEEE 271
           EE E   +  EE  E  E+ EE EE  +   E+  E G   E     + E EEE
Sbjct: 100 EEFEPLGDTPEELTEASEQLEEHEEGFQAMVEQAVERGLSAETITRIQAEYEEE 153

Length = 306

>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 33/87 (37%), Positives = 44/87 (50%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            E  ++     +   E++E   E    E+ EEEE EE EE+EEEE EEE EE E   +  
Sbjct: 50  PETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTP 109

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           EE  E  E+ EE EE  +   E+  E 
Sbjct: 110 EELTEASEQLEEHEEGFQAMVEQAVER 136

Length = 306

>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 33/88 (37%), Positives = 44/88 (50%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E  ++     +   E++E   E    E+ EEEE EE EE+EEEE EEE EE E   +  E
Sbjct: 51  ETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPE 110

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E  E  E+  E EE  +   E+  E  L
Sbjct: 111 ELTEASEQLEEHEEGFQAMVEQAVERGL 138

Length = 306

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 23/87 (26%), Positives = 59/87 (67%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +  +EEE+E+E+ +EE+++++E+ +EE ++ + +EE +E+   +E+E+E+E++ EE  + 
Sbjct: 101 ESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDR 160

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           EEE++ E    +   ++  +++   ++
Sbjct: 161 EEEKKRERVRAKSRPKKPPKKKPPNKK 187

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 24/88 (27%), Positives = 56/88 (63%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +    + +  +E + E  +EEE+E+E+ +EE+++++E+ +EE ++ + +EE +E+   +
Sbjct: 85  SKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPK 144

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E+E+E+E++  E  + EEE++ E     
Sbjct: 145 EKEKEKEKKVEEPRDREEEKKRERVRAK 172

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 23/88 (26%), Positives = 57/88 (64%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KEE+++++E+ +EE ++ + +EE +E+   +E+E+E+E++ EE  + EEE++ E    + 
Sbjct: 114 KEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKS 173

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
             ++  +++   +++E  EEE++ +   
Sbjct: 174 RPKKPPKKKPPNKKKEPPEEEKQRQAAR 201

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 24/102 (23%), Positives = 54/102 (52%)

Query: 166 NVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 225
           +V D+S  +++      F     ++E + +  ++E+ + E  +E ++EE  +E     + 
Sbjct: 700 DVEDDSDDSELDFAEDDFSDSTSDDEPKLDAIDDEDAKSEGSQESDQEEGLDEIFYSFDG 759

Query: 226 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEE 267
           E++  +   E  EE+E  EEE+EEEE +E   +  ++++ + 
Sbjct: 760 EQDNSDSFAESSEEDESSEEEKEEEENKEVSAKRAKKKQRKN 801

Length = 821

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 219 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEE 259
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 20/40 (50%), Positives = 24/40 (60%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 223
               +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 281 KDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 225 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEE 266
            ++  E+EE E++  +E+EE+E   EE+E    EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 227 EEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEE 268
            ++  E+EE E++  +E+EE+E   EE+  E  EEEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|235285 PRK04335, PRK04335, cell division protein ZipA; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 27/82 (32%), Positives = 42/82 (51%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
             E EEEE++ E+EE     + + + + E+ E + EE  +EE  EE E    +    E +
Sbjct: 95  GGELEEEEDKFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEPEPVAAKVPMAEVQ 154

Query: 250 EEEEEGEEEEEEEEEEEEEEEE 271
            EEE   E +E EE + E E +
Sbjct: 155 PEEETEIEVDEPEEPKPEPELD 176

Length = 313

>gnl|CDD|235285 PRK04335, PRK04335, cell division protein ZipA; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 28/85 (32%), Positives = 44/85 (51%)

Query: 182 PFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
           P +  E EEEE++ E+EE     + + + + E+ E + EE  +EE  EE E    +    
Sbjct: 92  PLFGGELEEEEDKFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEPEPVAAKVPMA 151

Query: 242 EEEEEEEEEEEEEGEEEEEEEEEEE 266
           E + EEE E E +  EE + E E +
Sbjct: 152 EVQPEEETEIEVDEPEEPKPEPELD 176

Length = 313

>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 28/79 (35%), Positives = 47/79 (59%)

Query: 181 MPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240
           M    ++ + E  EE+  +E E +EE++ +EE+ E EE E+EE  E+ EE  E + EE +
Sbjct: 1   MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELK 60

Query: 241 EEEEEEEEEEEEEEGEEEE 259
           +E  + +EE ++ E E E 
Sbjct: 61  DENNKLKEENKKLENELEA 79

Length = 211

>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2)

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 21/89 (23%), Positives = 43/89 (48%)

Query: 182 PFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
           P   +  +E EE  E +    E E  +E E+   +E EE+      EEE++ ++ + E +
Sbjct: 675 PSKSQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQ 734

Query: 242 EEEEEEEEEEEEEGEEEEEEEEEEEEEEE 270
           +   EE E  E     E+   + ++++++
Sbjct: 735 DISLEELEALEANLLAEQNSLKAQKQQQK 763

All proteins in this family for which functions are known are flap endonucleases that generate the 3' incision next to DNA damage as part of nucleotide excision repair. This family is related to many other flap endonuclease families including the fen1 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1034

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 19/88 (21%), Positives = 56/88 (63%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           ++   ++ E++ +++EE+  EE + ++  E+E  ++ E+E  + +E++++ EE E++ + 
Sbjct: 70  QQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQL 129

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E++++EE+      E++++ E  + + A
Sbjct: 130 EQKQQEEQARKAAAEQKKKAEAAKAKAA 157

Length = 387

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 19/88 (21%), Positives = 51/88 (57%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K+  E+E  ++ E+E  + +E++++ EE E++ + E++++EE+  +   E++++ E  + 
Sbjct: 95  KQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKA 154

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           +   E  + +   E +++ EE  +  E 
Sbjct: 155 KAAAEAAKLKAAAEAKKKAEEAAKAAEE 182

Length = 387

>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 25/87 (28%), Positives = 43/87 (49%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
             +E E   +E+ EE   + EEE     E +E   E++   E E E+EE  ++ EE+  +
Sbjct: 186 EEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQ 245

Query: 243 EEEEEEEEEEEEGEEEEEEEEEEEEEE 269
           E E + E  E++ + E   +  E + E
Sbjct: 246 ELERQAEAHEQKLKNELALQAIELQRE 272

Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493

>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 26/90 (28%), Positives = 45/90 (50%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
             +E   + EEE     E +E   E++   E E E+EE  ++ EE+  +E E + E  E+
Sbjct: 197 KREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAHEQ 256

Query: 243 EEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           + + E   +  E + E  +E +E+ EEE  
Sbjct: 257 KLKNELALQAIELQREFNKEIKEKVEEERN 286

Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493

>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 27/83 (32%), Positives = 42/83 (50%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
           EEEEE E   +E+ EE   + EEE     E +E   E++   E E E+EE  ++ EE+  
Sbjct: 185 EEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLR 244

Query: 250 EEEEEGEEEEEEEEEEEEEEEEA 272
           +E E   E  E++ + E   +  
Sbjct: 245 QELERQAEAHEQKLKNELALQAI 267

Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 18/56 (32%), Positives = 22/56 (39%)

Query: 200 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEG 255
               EE  E  E  EEE          EEEEE E E+EE  EE +  + +      
Sbjct: 12  AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPGS 67

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 18/58 (31%), Positives = 24/58 (41%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
           ++     EE  E  E  EEE          EEEEE E E+EE  EE +  + +     
Sbjct: 9   RKLAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 18/55 (32%), Positives = 21/55 (38%)

Query: 208 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEE 262
               EE  E  E  EEE          EEEEE E E+EE  EE +    +     
Sbjct: 12  AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 18/55 (32%), Positives = 22/55 (40%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
               EE  E  E  EEE          EEEEE E E+EE  EE +  + +     
Sbjct: 12  AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 18/55 (32%), Positives = 22/55 (40%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
               EE  E  E  EEE          EEEEE E E+EE  EE +  + +     
Sbjct: 12  AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 18/55 (32%), Positives = 22/55 (40%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
               EE  E  E  EEE          EEEEE E E+EE  EE +  + +     
Sbjct: 12  AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 18/55 (32%), Positives = 22/55 (40%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
               EE  E  E  EEE          EEEEE E E+EE  EE +  + +     
Sbjct: 12  AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 18/55 (32%), Positives = 22/55 (40%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
               EE  E  E  EEE          EEEEE E E+EE  EE +  + +     
Sbjct: 12  AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 18/55 (32%), Positives = 22/55 (40%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
               EE  E  E  EEE          EEEEE E E+EE  EE +  + +     
Sbjct: 12  AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 18/55 (32%), Positives = 22/55 (40%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
               EE  E  E  EEE          EEEEE E E+EE  EE +  + +     
Sbjct: 12  AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 18/55 (32%), Positives = 22/55 (40%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
               EE  E  E  EEE          EEEEE E E+EE  EE +  + +     
Sbjct: 12  AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 18/55 (32%), Positives = 22/55 (40%)

Query: 197 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
               EE  E  E  EEE          EEEEE E E+EE  EE +  + +     
Sbjct: 12  AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 18/55 (32%), Positives = 22/55 (40%)

Query: 198 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
               EE  E  E  EEE          EEEEE E E+EE  EE +  + +     
Sbjct: 12  AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 18/55 (32%), Positives = 22/55 (40%)

Query: 199 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253
               EE  E  E  EEE          EEEEE E E+EE  EE +  + +     
Sbjct: 12  AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 18/55 (32%), Positives = 22/55 (40%)

Query: 216 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEE 270
               EE  E  E  EEE          EEEEE E E+EE  EE +  + +     
Sbjct: 12  AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 34/87 (39%), Positives = 44/87 (50%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EE EEE E+  +E EE   +     ++    E E E+ EE   +  +E  E E E EE E
Sbjct: 708 EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E  EE EEE  E E E EE E + E+ 
Sbjct: 768 ERLEEAEEELAEAEAEIEELEAQIEQL 794

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 33/88 (37%), Positives = 44/88 (50%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EE+  E E+   E  +E EE EEE E+  +E EE   +     ++    E E E+ EE  
Sbjct: 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            +  +E  E E E EE EE  EE EE L
Sbjct: 750 AQLSKELTELEAEIEELEERLEEAEEEL 777

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740)

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 24/64 (37%), Positives = 35/64 (54%)

Query: 204 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEE 263
           +++EE         E + E  +    +   EEEEE E EE+EE  E+E  +  +E+ EEE
Sbjct: 111 DDDEENLPSSIAPPEIDPEPRKPIVPDLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEE 170

Query: 264 EEEE 267
           EEEE
Sbjct: 171 EEEE 174

This family consists of several uncharacterized plant proteins of unknown function. Length = 565

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 31/67 (46%), Positives = 45/67 (67%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253
           EEE EE+E        EEEE++EE E EEEEEEEE + + ++ E++E E ++EEE E+E 
Sbjct: 19  EEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKEL 78

Query: 254 EGEEEEE 260
           + EE  +
Sbjct: 79  QREERLK 85

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 31/67 (46%), Positives = 44/67 (65%)

Query: 204 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEE 263
           EEE EE+E        EEEE++EE E EEEEEEEE + + ++ E++E E + EEE E+E 
Sbjct: 19  EEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKEL 78

Query: 264 EEEEEEE 270
           + EE  +
Sbjct: 79  QREERLK 85

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 31/67 (46%), Positives = 45/67 (67%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEG 255
           EEE EE+E        EEEE++EE E EEEEEEEE + + ++ E++E E ++EEE E+E 
Sbjct: 19  EEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKEL 78

Query: 256 EEEEEEE 262
           + EE  +
Sbjct: 79  QREERLK 85

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 32/66 (48%), Positives = 45/66 (68%)

Query: 208 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEE 267
           EEE EE+E        EEEE++EE E EEEEEEEE + + ++ E++E E ++EEE E+E 
Sbjct: 19  EEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKEL 78

Query: 268 EEEEAL 273
           + EE L
Sbjct: 79  QREERL 84

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 30/67 (44%), Positives = 44/67 (65%)

Query: 197 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGE 256
           EEE EE+E        EEEE++EE E EEEEEEEE + + ++ E++E E ++EEE E+  
Sbjct: 19  EEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKEL 78

Query: 257 EEEEEEE 263
           + EE  +
Sbjct: 79  QREERLK 85

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 13/51 (25%), Positives = 29/51 (56%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 234
           + +             E E +EE+ E++++++E+E+E++EEE +   + EE
Sbjct: 29  FIDPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 13/49 (26%), Positives = 28/49 (57%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 235
           +             E E +EE+ E++++++E+E+E++EEE +   + EE
Sbjct: 31  DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 13/49 (26%), Positives = 28/49 (57%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 236
           +             E E +EE+ E++++++E+E+E++EEE +   + EE
Sbjct: 31  DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 13/49 (26%), Positives = 28/49 (57%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 237
           +             E E +EE+ E++++++E+E+E++EEE +   + EE
Sbjct: 31  DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 13/49 (26%), Positives = 28/49 (57%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240
           +             E E +EE+ E++++++E+E+E++EEE +   + EE
Sbjct: 31  DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 13/49 (26%), Positives = 28/49 (57%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
           +             E E +EE+ E++++++E+E+E++EEE +   + EE
Sbjct: 31  DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 13/49 (26%), Positives = 28/49 (57%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
           +             E E +EE+ E++++++E+E+E++EEE +   + EE
Sbjct: 31  DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 13/49 (26%), Positives = 28/49 (57%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
           +             E E +EE+ E++++++E+E+E++EEE +   + EE
Sbjct: 31  DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 13/49 (26%), Positives = 28/49 (57%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +             E E +EE+ E++++++E+E+E++EEE +   + EE
Sbjct: 31  DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 13/49 (26%), Positives = 28/49 (57%)

Query: 197 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           +             E E +EE+ E++++++E+E+E++EEE +   + EE
Sbjct: 31  DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 13/49 (26%), Positives = 28/49 (57%)

Query: 198 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           +             E E +EE+ E++++++E+E+E++EEE +   + EE
Sbjct: 31  DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 13/49 (26%), Positives = 28/49 (57%)

Query: 199 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           +             E E +EE+ E++++++E+E+E++EEE +   + EE
Sbjct: 31  DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 13/49 (26%), Positives = 28/49 (57%)

Query: 200 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
           +             E E +EE+ E++++++E+E+E++EEE +   + EE
Sbjct: 31  DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 13/49 (26%), Positives = 28/49 (57%)

Query: 201 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
           +             E E +EE+ E++++++E+E+E++EEE +   + EE
Sbjct: 31  DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 22/43 (51%), Positives = 31/43 (72%)

Query: 230 EEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           ++EEE+ + + EE EE+EEE E+ E   +EE+EE EE EEE A
Sbjct: 18  KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETA 60

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 204 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEE 263
           ++EEE+ + + EE EE+EEE E+ E+  +EE+EE EE EEE     +      +   +E 
Sbjct: 18  KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQET 77

Query: 264 EE 265
             
Sbjct: 78  IS 79

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 208 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEE 267
           ++EEE+ + + EE EE+EEE E+ E+  +EE+EE EE EEE     +      +   +E 
Sbjct: 18  KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQET 77

Query: 268 EE 269
             
Sbjct: 78  IS 79

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 200 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEE 259
           ++EEE+ + + EE EE+EEE E+ E+  +EE+EE EE EEE     +      +   +E 
Sbjct: 18  KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQET 77

Query: 260 EE 261
             
Sbjct: 78  IS 79

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 210 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEE 269
           ++EEE+ + + EE EE+EEE E+ E+  +EE+EE EE EEE     +      +   +E 
Sbjct: 18  KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQET 77

Query: 270 EEA 272
              
Sbjct: 78  ISI 80

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           ++EEE+ + + EE EE+EEE E+ E+  +EE+EE EE EEE     +      +   +E 
Sbjct: 18  KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQET 77

Query: 246 EE 247
             
Sbjct: 78  IS 79

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           ++EEE+ + + EE EE+EEE E+ E+  +EE+EE EE EEE     +      +   +E 
Sbjct: 18  KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQET 77

Query: 247 EE 248
             
Sbjct: 78  IS 79

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           ++EEE+ + + EE EE+EEE E+ E+  +EE+EE EE EEE     +      +   +E 
Sbjct: 18  KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQET 77

Query: 248 EE 249
             
Sbjct: 78  IS 79

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
           ++EEE+ + + EE EE+EEE E+ E+  +EE+EE EE EEE     +      +   +E 
Sbjct: 18  KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQET 77

Query: 249 EE 250
             
Sbjct: 78  IS 79

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
           ++EEE+ + + EE EE+EEE E+ E+  +EE+EE EE EEE     +      +   +E 
Sbjct: 18  KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQET 77

Query: 250 EE 251
             
Sbjct: 78  IS 79

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
           ++EEE+ + + EE EE+EEE E+ E+  +EE+EE EE EEE     +      +   +E 
Sbjct: 18  KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQET 77

Query: 251 EE 252
             
Sbjct: 78  IS 79

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
           ++EEE+ + + EE EE+EEE E+ E+  +EE+EE EE EEE     +      +   +E 
Sbjct: 18  KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQET 77

Query: 252 EE 253
             
Sbjct: 78  IS 79

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
           ++EEE+ + + EE EE+EEE E+ E+  +EE+EE EE EEE     +      +   +E 
Sbjct: 18  KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQET 77

Query: 253 EE 254
             
Sbjct: 78  IS 79

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 209 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEE 268
           ++EEE+ + + EE EE+EEE E+ E+  +EE+EE EE EEE            +   +E 
Sbjct: 18  KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQET 77

Query: 269 EE 270
             
Sbjct: 78  IS 79

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 23/68 (33%), Positives = 31/68 (45%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            K  E       EE E+ E E +  EE  +  E+   E EE   + EE   E +EE E+ 
Sbjct: 73  VKGLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDL 132

Query: 244 EEEEEEEE 251
           E+  EE E
Sbjct: 133 EDLLEELE 140

Length = 660

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 22/74 (29%), Positives = 32/74 (43%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
            +     +  E       EE E+ E E +  EE  +  E+   E EE   + EE   E +
Sbjct: 67  LDYLRSVKGLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELD 126

Query: 250 EEEEEGEEEEEEEE 263
           EE E+ E+  EE E
Sbjct: 127 EELEDLEDLLEELE 140

Length = 660

>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

 Score = 39.7 bits (92), Expect = 0.001
 Identities = 26/89 (29%), Positives = 45/89 (50%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +EE  +++E+   E+ E+EE   + E EE        E EE  +E + E E EE   ++E
Sbjct: 592 EEELIQDDEKGNFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETEREENARKKE 651

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E     E EE  + E+++ +   EE+  +
Sbjct: 652 ELRGNFELEERGDPEKKDVDWYTEEKRKI 680

Length = 1077

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 28/58 (48%), Positives = 36/58 (62%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            EE+ E+ EEE EE E EE  E+E EEE  EEE E E  +EE+ +  E E + +E EE
Sbjct: 1   MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58

Length = 191

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 28/58 (48%), Positives = 36/58 (62%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            EE+ E+ EEE EE E EE  E+E EEE  EEE E E  +EE+ +  E E + +E EE
Sbjct: 1   MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58

Length = 191

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 28/58 (48%), Positives = 36/58 (62%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            EE+ E+ EEE EE E EE  E+E EEE  EEE E E  +EE+ +  E E + +E EE
Sbjct: 1   MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58

Length = 191

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 28/58 (48%), Positives = 36/58 (62%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
            EE+ E+ EEE EE E EE  E+E EEE  EEE E E  +EE+ +  E E + +E EE
Sbjct: 1   MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58

Length = 191

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 28/58 (48%), Positives = 36/58 (62%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
            EE+ E+ EEE EE E EE  E+E EEE  EEE E E  +EE+ +  E E + +E EE
Sbjct: 1   MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58

Length = 191

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 28/58 (48%), Positives = 36/58 (62%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
            EE+ E+ EEE EE E EE  E+E EEE  EEE E E  +EE+ +  E E + +E EE
Sbjct: 1   MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58

Length = 191

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 28/58 (48%), Positives = 36/58 (62%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
            EE+ E+ EEE EE E EE  E+E EEE  EEE E E  +EE+ +  E E + +E EE
Sbjct: 1   MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58

Length = 191

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 28/58 (48%), Positives = 36/58 (62%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
            EE+ E+ EEE EE E EE  E+E EEE  EEE E E  +EE+ +  E E + +E EE
Sbjct: 1   MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58

Length = 191

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 28/58 (48%), Positives = 36/58 (62%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
            EE+ E+ EEE EE E EE  E+E EEE  EEE E E  +EE+ +  E E + +E EE
Sbjct: 1   MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58

Length = 191

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 28/58 (48%), Positives = 36/58 (62%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
            EE+ E+ EEE EE E EE  E+E EEE  EEE E E  +EE+ +  E E + +E EE
Sbjct: 1   MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58

Length = 191

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 28/58 (48%), Positives = 36/58 (62%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253
            EE+ E+ EEE EE E EE  E+E EEE  EEE E E  +EE+ +  E E + +E EE
Sbjct: 1   MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58

Length = 191

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 28/58 (48%), Positives = 36/58 (62%)

Query: 197 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254
            EE+ E+ EEE EE E EE  E+E EEE  EEE E E  +EE+ +  E E + +E EE
Sbjct: 1   MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58

Length = 191

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 28/58 (48%), Positives = 36/58 (62%)

Query: 203 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEE 260
            EE+ E+ EEE EE E EE  E+E EEE  EEE E E  +EE+ +  E E + +E EE
Sbjct: 1   MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58

Length = 191

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 28/58 (48%), Positives = 36/58 (62%)

Query: 205 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEE 262
            EE+ E+ EEE EE E EE  E+E EEE  EEE E E  +EE+ +  E E + +E EE
Sbjct: 1   MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58

Length = 191

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 28/58 (48%), Positives = 36/58 (62%)

Query: 207 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEE 264
            EE+ E+ EEE EE E EE  E+E EEE  EEE E E  +EE+ +  E E + +E EE
Sbjct: 1   MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58

Length = 191

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 28/58 (48%), Positives = 36/58 (62%)

Query: 200 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEE 257
            EE+ E+ EEE EE E EE  E+E EEE  EEE E E  +EE+ +  E E + +E EE
Sbjct: 1   MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58

Length = 191

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 28/58 (48%), Positives = 36/58 (62%)

Query: 209 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEE 266
            EE+ E+ EEE EE E EE  E+E EEE  EEE E E  +EE+ +  E E + +E EE
Sbjct: 1   MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58

Length = 191

>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 22/79 (27%), Positives = 37/79 (46%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
           EE+E +   ++++  + ++  ++   E E++  E   E   E++  E      EE    E
Sbjct: 108 EEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAE 167

Query: 252 EEEGEEEEEEEEEEEEEEE 270
           EEE EE   EE   EE  E
Sbjct: 168 EEEAEEAPAEEAPAEESAE 186

Length = 186

>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 21/77 (27%), Positives = 35/77 (45%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KE +   ++++  + ++  ++   E E++  E   E   E++  E      EE    EEE
Sbjct: 110 KEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEE 169

Query: 245 EEEEEEEEEEGEEEEEE 261
           E EE   EE   EE  E
Sbjct: 170 EAEEAPAEEAPAEESAE 186

Length = 186

>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 22/81 (27%), Positives = 38/81 (46%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
           +KEE+E +   ++++  + ++  ++   E E++  E   E   E++  E      EE   
Sbjct: 106 WKEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAA 165

Query: 244 EEEEEEEEEEEGEEEEEEEEE 264
            EEEE EE    E   EE  E
Sbjct: 166 AEEEEAEEAPAEEAPAEESAE 186

Length = 186

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 22/61 (36%), Positives = 41/61 (67%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K ++  EEEEE+  +  EEE +EE +E++EE+++EE E +  +   EE+ + EE+E +++
Sbjct: 260 KVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQ 319

Query: 245 E 245
            
Sbjct: 320 A 320

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 21/55 (38%), Positives = 38/55 (69%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           EEEEE+  +  EEE +EE +E++EE+++EE E +  +   EE+ + EE+E +++ 
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 21/55 (38%), Positives = 38/55 (69%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           EEEEE+  +  EEE +EE +E++EE+++EE E +  +   EE+ + EE+E +++ 
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 21/55 (38%), Positives = 38/55 (69%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
           EEEEE+  +  EEE +EE +E++EE+++EE E +  +   EE+ + EE+E +++ 
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 21/55 (38%), Positives = 38/55 (69%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
           EEEEE+  +  EEE +EE +E++EE+++EE E +  +   EE+ + EE+E +++ 
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 21/55 (38%), Positives = 38/55 (69%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
           EEEEE+  +  EEE +EE +E++EE+++EE E +  +   EE+ + EE+E +++ 
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 21/55 (38%), Positives = 38/55 (69%)

Query: 197 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
           EEEEE+  +  EEE +EE +E++EE+++EE E +  +   EE+ + EE+E +++ 
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 21/55 (38%), Positives = 38/55 (69%)

Query: 198 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
           EEEEE+  +  EEE +EE +E++EE+++EE E +  +   EE+ + EE+E +++ 
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 21/55 (38%), Positives = 38/55 (69%)

Query: 199 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253
           EEEEE+  +  EEE +EE +E++EE+++EE E +  +   EE+ + EE+E +++ 
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 21/55 (38%), Positives = 38/55 (69%)

Query: 200 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254
           EEEEE+  +  EEE +EE +E++EE+++EE E +  +   EE+ + EE+E +++ 
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 21/55 (38%), Positives = 38/55 (69%)

Query: 217 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           EEEEE+  +  EEE +EE +E++EE+++EE E +  +   EE+ + EE+E +++ 
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor [Transcription]

 Score = 39.3 bits (91), Expect = 0.001
 Identities = 30/98 (30%), Positives = 49/98 (50%)

Query: 176 VLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 235
                     EE+ +    E E +E  E ++E+++EE E  E  +EE + +  +E  EE+
Sbjct: 264 AEEEGEEGMSEEDLDVGAAEIENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEK 323

Query: 236 EEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           EE++E EE E   E   +E  E E+  EE+  + E A 
Sbjct: 324 EEDDENEENERHTELLADELNELEKGIEEKRRQMESAT 361

Length = 392

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 12/81 (14%), Positives = 36/81 (44%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
             E   EE + E E  EE+ +   E E   E    + +E+ + E++ ++ + + + + + 
Sbjct: 48  VLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKP 107

Query: 251 EEEEGEEEEEEEEEEEEEEEE 271
           + +   + + ++   +   + 
Sbjct: 108 KPKVKPQPKPKKPPSKTAAKA 128

Length = 244

>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 29/87 (33%), Positives = 46/87 (52%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
             E    E  E++ EE E+   +E  + EEE E+E E+  +EEE   +    EE  +E E
Sbjct: 357 GPEPPLLERLEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELE 416

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           ++EE   +E  +EE+E  E+ + E  E
Sbjct: 417 QDEENFLKELSKEEKELLEKLKMEASE 443

Length = 455

>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 31/89 (34%), Positives = 49/89 (55%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
           E  E++ EE E+   +E  + EEE E+E E+  +EEE   +    EE  +E E++EE   
Sbjct: 364 ERLEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFL 423

Query: 250 EEEEEGEEEEEEEEEEEEEEEEALWGYAD 278
           +E  + E+E  E+ + E  E E L+G A 
Sbjct: 424 KELSKEEKELLEKLKMEASEVEKLFGRAL 452

Length = 455

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 29/88 (32%), Positives = 51/88 (57%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EE E E E++ EE E   +E E+ +EE EE++E+ +EEE++  EE E+E ++  +E ++E
Sbjct: 526 EELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKE 585

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            +E  +E    ++      +  E  EA 
Sbjct: 586 ADEIIKELRQLQKGGYASVKAHELIEAR 613

Length = 782

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 39.8 bits (94), Expect = 0.001
 Identities = 28/79 (35%), Positives = 49/79 (62%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
              E++E+  E     EE E E E++ EE E   +E E+ +EE EE++E+ +EEE++  E
Sbjct: 510 LIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLE 569

Query: 243 EEEEEEEEEEEEGEEEEEE 261
           E E+E ++  +E ++E +E
Sbjct: 570 EAEKEAQQAIKEAKKEADE 588

Length = 782

>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 26/91 (28%), Positives = 55/91 (60%)

Query: 168 SDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 227
            D+ G+      +    +++ +  EE  E+E  +    +++  +  + + ++ ++EE+++
Sbjct: 195 KDSLGNGSSTNGLPDSSQDKNKSLEEYYEKESSDAAASQDDGPKGSDVKNKKSDDEEDDD 254

Query: 228 EEEEEEEEEEEEEEEEEEEEEEEEEEEGEEE 258
           ++ +  EE+E +E+EEEEE EEEEEEE E+E
Sbjct: 255 QDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285

PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast, and may confer resistance in higher eukaryotes. Length = 285

>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 40/108 (37%), Positives = 51/108 (47%)

Query: 161 EANSCNVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 220
                 V DN    D      P    EEEE  EE +  EEEE+EE   +   E   E  E
Sbjct: 151 VTRFNIVWDNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEEVGSDSYGEGNRELNE 210

Query: 221 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEE 268
           EEEEE E  ++ E+  + E E  ++++ EEEE E E     E E EEE
Sbjct: 211 EEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEIEWEEE 258

Length = 279

>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366)

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 26/99 (26%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------------------- 235
           EEE+                 E    E E E E EEE E++                   
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKKSGMGPLLLVLAVALIGGGA 174

Query: 236 -------EEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEE 267
                  + +++E+   +++ +E + G+E+EEE++E   
Sbjct: 175 YYYFKFYKPKQQEKGAPDDDLDEYDYGDEDEEEDDEPPW 213

This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 227 and 387 amino acids in length. Length = 213

>gnl|CDD|235562 PRK05687, fliH, flagellar assembly protein H; Validated

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 24/92 (26%), Positives = 33/92 (35%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
           F    E    E      E  E EE  EEE     EEE E   ++  EE     + E   E
Sbjct: 24  FDPPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEEGFAAGKAEGRAE 83

Query: 243 EEEEEEEEEEEEGEEEEEEEEEEEEEEEEALW 274
             E   +E   +G E+   E + +   + A  
Sbjct: 84  GYEAGYQEGLAQGLEQGLAEGQAQAAPQAAQL 115

Length = 246

>gnl|CDD|212120 cd10809, GH38N_AMII_GMII_SfManIII_like, N-terminal catalytic domain of Golgi alpha-mannosidase II, Spodoptera frugiperda Sf9 alpha-mannosidase III, and similar proteins; glycoside hydrolase family 38 (GH38)

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 13/16 (81%), Positives = 15/16 (93%)

Query: 169 DNSGSTDVLTHMMPFY 184
           D +GSTD+LTHMMPFY
Sbjct: 173 DATGSTDILTHMMPFY 188

This subfamily is represented by Golgi alpha-mannosidase II (GMII, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A1), a monomeric, membrane-anchored class II alpha-mannosidase existing in the Golgi apparatus of eukaryotes. GMII plays a key role in the N-glycosylation pathway. It catalyzes the hydrolysis of the terminal both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. GMII is activated by zinc or cobalt ions and is strongly inhibited by swainsonine. Inhibition of GMII provides a route to block cancer-induced changes in cell surface oligosaccharide structures. GMII has a pH optimum of 5.5-6.0, which is intermediate between those of acidic (lysosomal alpha-mannosidase) and neutral (ER/cytosolic alpha-mannosidase) enzymes. GMII is a retaining glycosyl hydrolase of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex; two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. This subfamily also includes human alpha-mannosidase 2x (MX, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A2). MX is enzymatically and functionally very similar to GMII, and is thought to also function in the N-glycosylation pathway. Also found in this subfamily is class II alpha-mannosidase encoded by Spodoptera frugiperda Sf9 cell. This alpha-mannosidase is an integral membrane glycoprotein localized in the Golgi apparatus. It shows high sequence homology with mammalian Golgi alpha-mannosidase II(GMII). It can hydrolyze p-nitrophenyl alpha-D-mannopyranoside (pNP-alpha-Man), and it is inhibited by swainsonine. However, the Sf9 enzyme is stimulated by cobalt and can hydrolyze (Man)5(GlcNAc)2 to (Man)3(GlcNAc)2, but it cannot hydrolyze GlcNAc(Man)5(GlcNAc)2, which is distinct from that of GMII. Thus, this enzyme has been designated as Sf9 alpha-mannosidase III (SfManIII). It probably functions in an alternate N-glycan processing pathway in Sf9 cells. Length = 340

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 218 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            +E +  ++     +  + EE +E+E+EEEE+  +E  EEE E+ EEE  +  E  
Sbjct: 349 TKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDG 404

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 19/88 (21%), Positives = 35/88 (39%)

Query: 182  PFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
            P   +E+    E E           E+      E+++ EE   EE+   + + +E E  E
Sbjct: 3800 PDLPQEKSNSGELESGTGLGSGVGAEDITNTLNEDDDLEELANEEDTANQSDLDESEARE 3859

Query: 242  EEEEEEEEEEEEEGEEEEEEEEEEEEEE 269
             E +     ++    E E  + EEE ++
Sbjct: 3860 LESDMNGVTKDSVVSENENSDSEEENQD 3887

Length = 4600

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 7/87 (8%), Positives = 61/87 (70%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
             +   +++ ++E +  ++ E++   +++++    ++ +   + +++++++++++ ++++
Sbjct: 87  AAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDD 146

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            ++++++E++ E++++++ ++E+EE++
Sbjct: 147 IDDDDDDEDDDEDDDDDDVDDEDEEKK 173

Length = 509

>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 18/85 (21%), Positives = 40/85 (47%)

Query: 157 VMTDEANSCNVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 216
           V+ D  +S ++++  G             E++ +E+E++++ EEEE    +   E+ +  
Sbjct: 198 VVRDMLSSMDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDAS 257

Query: 217 EEEEEEEEEEEEEEEEEEEEEEEEE 241
            EE E  E E  E   ++  + ++ 
Sbjct: 258 SEEMESGEMEAAEASADDTPDSDDA 282

This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 14/80 (17%), Positives = 20/80 (25%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
               +     E+   + E + E  EE    E+EE  +        E             E
Sbjct: 53  TSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAE 112

Query: 253 EEGEEEEEEEEEEEEEEEEA 272
           E       E       E  A
Sbjct: 113 ELASGLSPENTSGSSPESPA 132

Length = 413

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.4 bits (91), Expect = 0.002
 Identities = 29/87 (33%), Positives = 57/87 (65%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            K EE   EE  +  EEE++ + EE ++ EE + + EE ++ EEE+++ E+ +++E EE++
Sbjct: 1588 KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            + EE ++ EE  + +  EE ++ EE++
Sbjct: 1648 KAEELKKAEEENKIKAAEEAKKAEEDK 1674

Length = 2084

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 17/80 (21%), Positives = 26/80 (32%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253
           ++ + EE+ E EE + +    E       E        E   E  EE     E + EE  
Sbjct: 851 QDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVV 910

Query: 254 EGEEEEEEEEEEEEEEEEAL 273
             E    E       E+  +
Sbjct: 911 VVETTHPEVIAAPVTEQPQV 930

Length = 1068

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 19/92 (20%), Positives = 27/92 (29%)

Query: 181 MPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240
            P   + EE+ E EE + +    E       E        E   E  EE     E + EE
Sbjct: 849 RPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEE 908

Query: 241 EEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
               E    E       E+ +   E +     
Sbjct: 909 VVVVETTHPEVIAAPVTEQPQVITESDVAVAQ 940

Length = 1068

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 14/70 (20%), Positives = 37/70 (52%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +++  E  E ++ E  E+   ++E+++    E +    +E+ + ++E +    EE+  +
Sbjct: 646 AQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQ 705

Query: 245 EEEEEEEEEE 254
           E E+EE  ++
Sbjct: 706 ETEQEERVQQ 715

Length = 1068

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 40/87 (45%), Positives = 51/87 (58%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           + + EE + E    EEE E+ +   EE EEE EE EEE EE +E  EE EEE E  EE  
Sbjct: 715 ERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL 774

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            + +EE EE  E+ +  +EE EE EEE
Sbjct: 775 AKLKEEIEELEEKRQALQEELEELEEE 801

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 44/93 (47%), Positives = 54/93 (58%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EE+ +  +EE EE EEE EE E   +  E E E  E+  E  E+E EE EEE EE EE+ 
Sbjct: 785 EEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKL 844

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEALWGYAD 278
           +E EEE EE E+E EE +EE EE E       D
Sbjct: 845 DELEEELEELEKELEELKEELEELEAEKEELED 877

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 38/89 (42%), Positives = 47/89 (52%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
              E+  EE   + EE E + EE + E    EEE E+ +   EE EEE EE EEE EE +
Sbjct: 698 RSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQ 757

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEALW 274
           E  EE EEE E  EE   + +EE EE   
Sbjct: 758 ERLEELEEELESLEEALAKLKEEIEELEE 786

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 46/88 (52%), Positives = 57/88 (64%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +  E E E  E+  E  E+E EE EEE EE EE+ +E EEE EE E+E EE +EE EE 
Sbjct: 809 LDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEEL 868

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E E+EE E+E +E EEE+EE EEE  E 
Sbjct: 869 EAEKEELEDELKELEEEKEELEEELREL 896

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 48/89 (53%), Positives = 58/89 (65%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            E E E  E+  E  E+E EE EEE EE EE+ +E EEE EE E+E EE +EE EE E E
Sbjct: 812 LERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAE 871

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           +EE E+E +E EEE+EE EEE  E E  L
Sbjct: 872 KEELEDELKELEEEKEELEEELRELESEL 900

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 46/88 (52%), Positives = 56/88 (63%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           +EE EE EEE EE E   +  E E E  E+  E  E+E EE EEE EE EE+ +E EEE 
Sbjct: 792 QEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEEL 851

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           EE E+E EE +EE EE E E+EE E+ L
Sbjct: 852 EELEKELEELKEELEELEAEKEELEDEL 879

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 39/88 (44%), Positives = 45/88 (51%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            EE EE  E   EE  E E E  E   E EE + E E  EE  E   E  E+ +EE +E 
Sbjct: 371 LEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKEL 430

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E E EE + E EE  EE EE EE+ EE 
Sbjct: 431 EAELEELQTELEELNEELEELEEQLEEL 458

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 40/87 (45%), Positives = 51/87 (58%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           ++ EE + E    EEE E+ +   EE EEE EE EEE EE +E  EE EEE E  EE   
Sbjct: 716 RQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA 775

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           + +EE EE E + +  +EE EE EEE 
Sbjct: 776 KLKEEIEELEEKRQALQEELEELEEEL 802

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 43/88 (48%), Positives = 52/88 (59%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           + E    EEE E+ +   EE EEE EE EEE EE +E  EE EEE E  EE   + +EE 
Sbjct: 722 KRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEI 781

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           EE EE+ +  +EE EE EEE EE E  L
Sbjct: 782 EELEEKRQALQEELEELEEELEEAERRL 809

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 44/89 (49%), Positives = 54/89 (60%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
             EE EE+ +  +EE EE EEE EE E   +  E E E  E+  E  E+E EE EEE EE
Sbjct: 780 EIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEE 839

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            EE+ +E EEE EE E+E EE +EE EE 
Sbjct: 840 LEEKLDELEEELEELEKELEELKEELEEL 868

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 46/87 (52%), Positives = 55/87 (63%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +EE EE EEE EE E   +  E E E  E+  E  E+E EE EEE EE EE+ +E EEE 
Sbjct: 792 QEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEEL 851

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           EE E+E EE  EE EE E E+EE E+E
Sbjct: 852 EELEKELEELKEELEELEAEKEELEDE 878

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 42/89 (47%), Positives = 51/89 (57%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           + EE + E    EEE E+ +   EE EEE EE EEE EE +E  EE EEE E  EE   +
Sbjct: 717 QLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAK 776

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            +EE EE EE  +  +EE EE EEE E  
Sbjct: 777 LKEEIEELEEKRQALQEELEELEEELEEA 805

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 37/86 (43%), Positives = 47/86 (54%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +  E+  EE   + EE E + EE + E    EEE E+ +   EE EEE EE EEE EE +
Sbjct: 698 RSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQ 757

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEE 270
           E  EE EEE    EE   + +EE EE
Sbjct: 758 ERLEELEEELESLEEALAKLKEEIEE 783

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 44/87 (50%), Positives = 54/87 (62%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +E E+E EE +EE EE E E+EE E+E +E EEE+EE EEE  E E E  E +EE E+  
Sbjct: 852 EELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLR 911

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           E  EE E +    E E  E EEE EEE
Sbjct: 912 ERLEELEAKLERLEVELPELEEELEEE 938

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 44/88 (50%), Positives = 55/88 (62%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           +EE EE EE+ +  +EE EE EEE EE E   +  E E E  E+  E  E+E EE EEE 
Sbjct: 778 KEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEI 837

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           EE EE+ +E EEE EE E+E EE +E L
Sbjct: 838 EELEEKLDELEEELEELEKELEELKEEL 865

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 38/87 (43%), Positives = 46/87 (52%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            +E + E EE  EE EE +EE  E +EE EE E E     E  EE E E EE EE  EE 
Sbjct: 269 IEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEEL 328

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEE 270
           +E+ E  +EE  E E   EE E+   E
Sbjct: 329 KEKIEALKEELEERETLLEELEQLLAE 355

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 47/95 (49%), Positives = 57/95 (60%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            E  E+  E  E+E EE EEE EE EE+ +E EEE EE E+E EE +EE EE E E+EE 
Sbjct: 816 LESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEEL 875

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEALWGYADM 279
           E+E +E EEE EE EEE  E E E  E       +
Sbjct: 876 EDELKELEEEKEELEEELRELESELAELKEEIEKL 910

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 46/88 (52%), Positives = 55/88 (62%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EEE EE E+E EE +EE EE E E+EE E+E +E EEE+EE EEE  E E E  E +EE 
Sbjct: 848 EEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEI 907

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E+  E  EE E + E  E E  E EE L
Sbjct: 908 EKLRERLEELEAKLERLEVELPELEEEL 935

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 42/89 (47%), Positives = 52/89 (58%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +    EEE E+ +   EE EEE EE EEE EE +E  EE EEE E  EE   + +EE EE
Sbjct: 724 ELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEE 783

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            EE+ +  +E  EE EEE EE E   +AL
Sbjct: 784 LEEKRQALQEELEELEEELEEAERRLDAL 812

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 42/88 (47%), Positives = 53/88 (60%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EE   + +EE EE EE+ +  +EE EE EEE EE E   +  E E E  E+  E  E+E 
Sbjct: 771 EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEI 830

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           EE EEE EE EE+ +E EEE EE E+ L
Sbjct: 831 EELEEEIEELEEKLDELEEELEELEKEL 858

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 44/89 (49%), Positives = 55/89 (61%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            ++  +EE EE EEE EE E   +  E E E  E+  E  E+E EE EEE EE EE+ +E
Sbjct: 787 KRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDE 846

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            EEE EE E+E EE +EE EE E E+EE 
Sbjct: 847 LEEELEELEKELEELKEELEELEAEKEEL 875

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 42/87 (48%), Positives = 51/87 (58%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            +E + E    EEE E+ +   EE EEE EE EEE EE +E  EE EEE E  EE   + 
Sbjct: 718 LEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKL 777

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEE 270
           +EE EE EE+    +EE EE EEE EE
Sbjct: 778 KEEIEELEEKRQALQEELEELEEELEE 804

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 44/89 (49%), Positives = 56/89 (62%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            +   +  E E E  E+  E  E+E EE EEE EE EE+ +E EEE EE E+E EE +EE
Sbjct: 805 AERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEE 864

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            EE E E+EE  +E +E EEE+EE EEE 
Sbjct: 865 LEELEAEKEELEDELKELEEEKEELEEEL 893

Length = 1163

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 19/88 (21%), Positives = 41/88 (46%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
             E    +E  E   EE +++ EEE ++E   E  E E E   +    + + + +  +E+
Sbjct: 228 APEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEK 287

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
             +E E E  EE++ +++  +    + +
Sbjct: 288 RRKELEREAKEEKQLKKKLAQLARLKEI 315

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 23/73 (31%), Positives = 35/73 (47%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEG 255
             E + E   +E+   E     +EE ++   E  + EE++    E    + E  EEEEE 
Sbjct: 109 SGESDLENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEE 168

Query: 256 EEEEEEEEEEEEE 268
             EEEEE +E E+
Sbjct: 169 IAEEEEEVKEPED 181

Members of this family contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of pfam00520 and, less often, one copy of pfam00612. Length = 230

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 23/87 (26%), Positives = 58/87 (66%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +E+E+E+ +EE+++++E+ +EE ++ + +EE +E+   +E+E+E+E++ EE  + EEE++
Sbjct: 106 EEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKK 165

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            E    +    +  +++   +++E  E
Sbjct: 166 RERVRAKSRPKKPPKKKPPNKKKEPPE 192

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 25/87 (28%), Positives = 56/87 (64%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
             +    + +  +E + E  +EEE+E+E+ +EE+++++E+ +EE ++ + +EE +E+   
Sbjct: 84  GSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPP 143

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           +E+E+E+E+  EE  + EEE++ E   
Sbjct: 144 KEKEKEKEKKVEEPRDREEEKKRERVR 170

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 26/88 (29%), Positives = 58/88 (65%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
             +    + +  +E + E  +EEE+E+E+ +EE+++++E+ +EE ++ + +EE +E+   
Sbjct: 84  GSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPP 143

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           +E+E+E+E++ EE  + EEE++ E   A
Sbjct: 144 KEKEKEKEKKVEEPRDREEEKKRERVRA 171

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 23/88 (26%), Positives = 58/88 (65%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +EE+++++E+ +EE ++ + +EE +E+   +E+E+E+E++ EE  + EEE++ E    +
Sbjct: 113 VKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAK 172

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
              ++  +++   +++E  EEE++ + A
Sbjct: 173 SRPKKPPKKKPPNKKKEPPEEEKQRQAA 200

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 218 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEE 258
           +++  +EE +E    + +    EEEEEEEEEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 226 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEE 266
           +++  +EE +E    + +    EEEEEEE EEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 217 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEE 257
           +++  +EE +E    + +    EEEEEEEEEEEEEE   EE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 167 VSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 220
           ++  +G     +       EE E++  +E+EE+E   EE+E E  EEEE+EE E
Sbjct: 19  LTFGNGKGPFASAQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 18/43 (41%), Positives = 29/43 (67%)

Query: 231 EEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+EE  +
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEV 73

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 26/71 (36%), Positives = 43/71 (60%)

Query: 180 MMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 239
           M    K+ + E  EE+  +E E +EE++ +EE+ E EE E+EE  E+ EE  E + EE +
Sbjct: 1   MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELK 60

Query: 240 EEEEEEEEEEE 250
           +E  + +EE +
Sbjct: 61  DENNKLKEENK 71

Length = 211

>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 27/78 (34%), Positives = 44/78 (56%)

Query: 180 MMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 239
                  + E  EE+  +E E +EE++ +EE+ E EE E+EE  E+ EE  E + EE ++
Sbjct: 2   EKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKD 61

Query: 240 EEEEEEEEEEEEEEEGEE 257
           E  + +EE ++ E E E 
Sbjct: 62  ENNKLKEENKKLENELEA 79

Length = 211

>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2)

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 20/102 (19%), Positives = 42/102 (41%)

Query: 167 VSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 226
            S         +      +E  E +    E E  +E E+   +E EE+      EEE++ 
Sbjct: 667 SSTLELQVPSKSQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDA 726

Query: 227 EEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEE 268
           ++ + E ++   EE E  E     E+   + ++++++    E
Sbjct: 727 DDFKNEWQDISLEELEALEANLLAEQNSLKAQKQQQKRIAAE 768

All proteins in this family for which functions are known are flap endonucleases that generate the 3' incision next to DNA damage as part of nucleotide excision repair. This family is related to many other flap endonuclease families including the fen1 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1034

>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2)

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 21/87 (24%), Positives = 40/87 (45%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            E EE  E +    E E  +E E+   +E EE+      EEE++ ++ + E ++   EE 
Sbjct: 682 DESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQDISLEEL 741

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           E  E     E    + ++++++    E
Sbjct: 742 EALEANLLAEQNSLKAQKQQQKRIAAE 768

All proteins in this family for which functions are known are flap endonucleases that generate the 3' incision next to DNA damage as part of nucleotide excision repair. This family is related to many other flap endonuclease families including the fen1 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1034

>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2)

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 21/85 (24%), Positives = 41/85 (48%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           E EE  E +    E E  +E E+   +E EE+      EEE++ ++ + E ++   EE E
Sbjct: 683 ESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQDISLEELE 742

Query: 248 EEEEEEEGEEEEEEEEEEEEEEEEA 272
             E     E+   + ++++++   A
Sbjct: 743 ALEANLLAEQNSLKAQKQQQKRIAA 767

All proteins in this family for which functions are known are flap endonucleases that generate the 3' incision next to DNA damage as part of nucleotide excision repair. This family is related to many other flap endonuclease families including the fen1 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1034

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 20/85 (23%), Positives = 51/85 (60%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           E+E  ++ E+E  + +E++++ EE E++ + E++++EE+  +   E++++ E  + +   
Sbjct: 99  EQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAA 158

Query: 248 EEEEEEEGEEEEEEEEEEEEEEEEA 272
           E  + +   E +++ EE  +  EEA
Sbjct: 159 EAAKLKAAAEAKKKAEEAAKAAEEA 183

Length = 387

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 19/88 (21%), Positives = 53/88 (60%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +E + ++  E+E  ++ E+E  + +E++++ EE E++ + E++++EE+  +   E++++ 
Sbjct: 90  EELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKA 149

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E  + +   E  + +   E +++ EE A
Sbjct: 150 EAAKAKAAAEAAKLKAAAEAKKKAEEAA 177

Length = 387

>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 27/81 (33%), Positives = 42/81 (51%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
           EEEEE E   +E+ EE   + EEE     E +E   E++   E E E+EE  ++ EE+  
Sbjct: 185 EEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLR 244

Query: 253 EEGEEEEEEEEEEEEEEEEAL 273
           +E E + E  E++ + E    
Sbjct: 245 QELERQAEAHEQKLKNELALQ 265

Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493

>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 28/83 (33%), Positives = 45/83 (54%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
           EEEEE E   +E+ EE   + EEE     E +E   E++   E E E+EE  ++ EE+  
Sbjct: 185 EEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLR 244

Query: 251 EEEEGEEEEEEEEEEEEEEEEAL 273
           +E E + E  E++ + E   +A+
Sbjct: 245 QELERQAEAHEQKLKNELALQAI 267

Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493

>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 25/87 (28%), Positives = 45/87 (51%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           +E+ EE   + EEE     E +E   E++   E E E+EE  ++ EE+  +E E + E  
Sbjct: 195 KEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAH 254

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E++ + E   +  E + E  +E +E +
Sbjct: 255 EQKLKNELALQAIELQREFNKEIKEKV 281

Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493

>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 27/84 (32%), Positives = 43/84 (51%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           EEEEE E   +E+ EE   + EEE     E +E   E++   E E E+EE  ++ EE+  
Sbjct: 185 EEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLR 244

Query: 248 EEEEEEEGEEEEEEEEEEEEEEEE 271
           +E E +    E++ + E   +  E
Sbjct: 245 QELERQAEAHEQKLKNELALQAIE 268

Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 18/55 (32%), Positives = 21/55 (38%)

Query: 211 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEE 265
               EE  E  E  EEE          EEEEE E E+EE  EE    + +     
Sbjct: 12  AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 18/55 (32%), Positives = 22/55 (40%)

Query: 204 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEE 258
               EE  E  E  EEE          EEEEE E E+EE  EE +  + +     
Sbjct: 12  AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 32/83 (38%), Positives = 40/83 (48%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
              E E E+ EE   +  +E  E E E EE EE  EE EEE  E E E EE E + E+ +
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795

Query: 246 EEEEEEEEEGEEEEEEEEEEEEE 268
           EE +   E  +E   E     EE
Sbjct: 796 EELKALREALDELRAELTLLNEE 818

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 33/88 (37%), Positives = 44/88 (50%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +++    E E E+ EE   +  +E  E E E EE EE  EE EEE  E E E EE E + 
Sbjct: 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E+ +EE +   E  +E   E     EEA
Sbjct: 792 EQLKEELKALREALDELRAELTLLNEEA 819

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 34/95 (35%), Positives = 45/95 (47%)

Query: 177 LTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 236
           L       +E     E + EE E + EE E + +E  EE  E EE+ EE +EE E  E E
Sbjct: 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE 359

Query: 237 EEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            EE E E EE E   EE  E+ E    +  + E +
Sbjct: 360 LEELEAELEELESRLEELEEQLETLRSKVAQLELQ 394

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 30/89 (33%), Positives = 41/89 (46%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
              +     ++    E E E+ EE   +  +E  E E E EE EE  EE EEE  E E E
Sbjct: 724 LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            EE E + E+ +EE +   E  +E    L
Sbjct: 784 IEELEAQIEQLKEELKALREALDELRAEL 812

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 33/89 (37%), Positives = 44/89 (49%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
             +E EE   +     ++    E E E+ EE   +  +E  E E E EE EE  EE EEE
Sbjct: 717 LRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEE 776

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
             E E E EE E + E+ +EE +   EAL
Sbjct: 777 LAEAEAEIEELEAQIEQLKEELKALREAL 805

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 34/86 (39%), Positives = 43/86 (50%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            E  +E EE EEE E+  +E EE   +     ++    E E E+ EE   +  +E  E E
Sbjct: 701 AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
            E EE EE  EE EEE  E E E EE
Sbjct: 761 AEIEELEERLEEAEEELAEAEAEIEE 786

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 33/86 (38%), Positives = 42/86 (48%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            E  +E EE EEE E+  +E EE   +     ++    E E E+ EE   +  +E  E E
Sbjct: 701 AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEE 270
            E EE EE   E EEE  E E E EE
Sbjct: 761 AEIEELEERLEEAEEELAEAEAEIEE 786

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 31/88 (35%), Positives = 41/88 (46%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            ++    E E E+ EE   +  +E  E E E EE EE  EE EEE  E E E EE E + 
Sbjct: 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E+ +EE +   E  +E   E     E  
Sbjct: 792 EQLKEELKALREALDELRAELTLLNEEA 819

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 34/87 (39%), Positives = 43/87 (49%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
            E  +E EE EEE E+  +E EE   +     ++    E E E+ EE   +  +E  E E
Sbjct: 701 AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            E EE EE  EE EEE  E E E E L
Sbjct: 761 AEIEELEERLEEAEEELAEAEAEIEEL 787

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 22/81 (27%), Positives = 38/81 (46%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           EEE   +  EE ++   +E      EE  E+  E+ E+  E +EE ++E  ++ ++  E 
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEV 503

Query: 247 EEEEEEEEGEEEEEEEEEEEE 267
           +     EE    EE  E+ E 
Sbjct: 504 DTYLLLEELGINEETYEKLEA 524

Length = 819

>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 22/83 (26%), Positives = 39/83 (46%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
           F +EE   +  EE ++   +E      EE  E+  E+ E+  E +EE ++E  ++ ++  
Sbjct: 442 FLEEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIP 501

Query: 243 EEEEEEEEEEEEGEEEEEEEEEE 265
           E +     EE    EE  E+ E 
Sbjct: 502 EVDTYLLLEELGINEETYEKLEA 524

Length = 819

>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740)

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 25/72 (34%), Positives = 39/72 (54%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
           F+ ++EE         E + E  +    +   EEEEE E EE+EE  E+E  +  +E+ E
Sbjct: 109 FHDDDEENLPSSIAPPEIDPEPRKPIVPDLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSE 168

Query: 243 EEEEEEEEEEEE 254
           EEEEEE +  ++
Sbjct: 169 EEEEEELKTMKD 180

This family consists of several uncharacterized plant proteins of unknown function. Length = 565

>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740)

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 24/70 (34%), Positives = 38/70 (54%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
           +++EE         E + E  +    +   EEEEE E EE+EE  E+E  +  +E+ EEE
Sbjct: 111 DDDEENLPSSIAPPEIDPEPRKPIVPDLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEE 170

Query: 251 EEEEGEEEEE 260
           EEEE +  ++
Sbjct: 171 EEEELKTMKD 180

This family consists of several uncharacterized plant proteins of unknown function. Length = 565

>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740)

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 24/70 (34%), Positives = 38/70 (54%)

Query: 199 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEE 258
           +++EE         E + E  +    +   EEEEE E EE+EE  E+E  +  +E+ EEE
Sbjct: 111 DDDEENLPSSIAPPEIDPEPRKPIVPDLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEE 170

Query: 259 EEEEEEEEEE 268
           EEEE +  ++
Sbjct: 171 EEEELKTMKD 180

This family consists of several uncharacterized plant proteins of unknown function. Length = 565

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 31/67 (46%), Positives = 44/67 (65%)

Query: 205 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEE 264
           EEE EE+E        EEEE++EE E EEEEEEEE + + ++ E++E E  +EEE E+E 
Sbjct: 19  EEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKEL 78

Query: 265 EEEEEEE 271
           + EE  +
Sbjct: 79  QREERLK 85

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 31/67 (46%), Positives = 44/67 (65%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254
           EEE EE+E        EEEE++EE E EEEEEEEE + + ++ E++E E ++EEE E+E 
Sbjct: 19  EEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKEL 78

Query: 255 GEEEEEE 261
             EE  +
Sbjct: 79  QREERLK 85

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 30/67 (44%), Positives = 44/67 (65%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
           EEE EE+E        EEEE++EE E EEEEEEEE + + ++ E++E E ++EEE E+E 
Sbjct: 19  EEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKEL 78

Query: 252 EEEGEEE 258
           + E   +
Sbjct: 79  QREERLK 85

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 31/67 (46%), Positives = 44/67 (65%)

Query: 198 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEE 257
           EEE EE+E        EEEE++EE E EEEEEEEE + + ++ E++E E ++EEE E E 
Sbjct: 19  EEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKEL 78

Query: 258 EEEEEEE 264
           + EE  +
Sbjct: 79  QREERLK 85

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 202 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEE 261
           ++EEE+ + + EE EE+EEE E+ E+  +EE+EE EE EEE     +          +E 
Sbjct: 18  KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQET 77

Query: 262 EE 263
             
Sbjct: 78  IS 79

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 26/76 (34%), Positives = 39/76 (51%)

Query: 171 SGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 230
            G+   L    P  K+EEE+ + + EE EE+EEE E+ E+  +EE+EE EE EEE     
Sbjct: 4   KGNAKKLKVRPPPTKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASS 63

Query: 231 EEEEEEEEEEEEEEEE 246
           +      +   +E   
Sbjct: 64  KAPSSSSKSSSQETIS 79

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 203 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEE 262
           ++EEE+ + + EE EE+EEE E+ E+  +EE+EE EE EEE     +      +   +E 
Sbjct: 18  KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQET 77

Query: 263 EE 264
             
Sbjct: 78  IS 79

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 198 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEE 257
           ++EEE+ + + EE EE+EEE E+ E+  +EE+EE EE EEE     +      +    E 
Sbjct: 18  KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQET 77

Query: 258 EE 259
             
Sbjct: 78  IS 79

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 24/89 (26%), Positives = 35/89 (39%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
            +     +  E       EE E+ E E +  EE  +  E+   E EE   + EE   E +
Sbjct: 67  LDYLRSVKGLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELD 126

Query: 248 EEEEEEEGEEEEEEEEEEEEEEEEALWGY 276
           EE E+ E   EE E     + +   L G 
Sbjct: 127 EELEDLEDLLEELEPLAYLDFDLSLLRGL 155

Length = 660

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 23/82 (28%), Positives = 33/82 (40%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEG 255
            +     +  E       EE E+ E E +  EE  +  E+   E EE   + EE   E  
Sbjct: 67  LDYLRSVKGLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELD 126

Query: 256 EEEEEEEEEEEEEEEEALWGYA 277
           EE E+ E+  EE E  A   + 
Sbjct: 127 EELEDLEDLLEELEPLAYLDFD 148

Length = 660

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 23/91 (25%), Positives = 33/91 (36%)

Query: 175 DVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 234
            V             E  +     +  E       EE E+ E E +  EE  +  E+   
Sbjct: 50  KVAEVAQISLSSLLSEVLDYLRSVKGLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSS 109

Query: 235 EEEEEEEEEEEEEEEEEEEEGEEEEEEEEEE 265
           E EE   + EE   E +EE  + E+  EE E
Sbjct: 110 EVEELTRKLEERLSELDEELEDLEDLLEELE 140

Length = 660

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 24/109 (22%), Positives = 39/109 (35%)

Query: 165 CNVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 224
            ++ +       L  +      +        E  +     +  E       EE E+ E E
Sbjct: 34  EDLEEGEKGLKELEKLKVAEVAQISLSSLLSEVLDYLRSVKGLEGRLFILPEEVEKLEAE 93

Query: 225 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            +  EE  +  E+   E EE   + EE     +EE E+ E+  EE E L
Sbjct: 94  LKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDLEDLLEELEPL 142

Length = 660

>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

 Score = 39.0 bits (90), Expect = 0.002
 Identities = 27/98 (27%), Positives = 47/98 (47%)

Query: 174 TDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 233
            D     +   +E  +++E+   E+ E+EE   + E EE        E EE  +E + E 
Sbjct: 582 KDATLDSIEGEEELIQDDEKGNFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYET 641

Query: 234 EEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           E EE   ++EE     E EE G+ E+++ +   EE+ +
Sbjct: 642 EREENARKKEELRGNFELEERGDPEKKDVDWYTEEKRK 679

Length = 1077

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 28/58 (48%), Positives = 35/58 (60%)

Query: 202 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEE 259
            EE+ E+ EEE EE E EE  E+E EEE  EEE E E  +EE+ +  E E +  E EE
Sbjct: 1   MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58

Length = 191

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 27/58 (46%), Positives = 35/58 (60%)

Query: 208 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEE 265
            EE+ E+ EEE EE E EE  E+E EEE  EEE E E  +EE+ +    E + +E EE
Sbjct: 1   MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58

Length = 191

>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 23/86 (26%), Positives = 41/86 (47%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           E + E + E  +EE+E +   ++++  + ++  ++   E E++  E   E   E++  E 
Sbjct: 96  EAQAEAKFEAWKEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEA 155

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEEA 272
                EE    EEEE EE   EE  A
Sbjct: 156 AAVAAEEAAAAEEEEAEEAPAEEAPA 181

Length = 186

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 21/55 (38%), Positives = 38/55 (69%)

Query: 210 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEE 264
           EEEEE+  +  EEE +EE +E++EE+++EE E +  +   EE+ + EE+E +++ 
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 21/55 (38%), Positives = 38/55 (69%)

Query: 205 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEE 259
           EEEEE+  +  EEE +EE +E++EE+++EE E +  +   EE+ + EE+E +++ 
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 21/55 (38%), Positives = 38/55 (69%)

Query: 216 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEE 270
           EEEEE+  +  EEE +EE +E++EE+++EE E +  +   EE+ + EE+E +++ 
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 21/55 (38%), Positives = 37/55 (67%)

Query: 207 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEE 261
           EEEEE+  +  EEE +EE +E++EE+++EE E +  +   EE+ + EE E +++ 
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 21/55 (38%), Positives = 37/55 (67%)

Query: 203 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEE 257
           EEEEE+  +  EEE +EE +E++EE+++EE E +  +   EE+ + EE+E + + 
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 21/55 (38%), Positives = 37/55 (67%)

Query: 211 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEE 265
           EEEEE+  +  EEE +EE +E++EE+++EE E +  +   EE+   EE+E +++ 
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 17/87 (19%), Positives = 51/87 (58%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K+ +E  ++++E +   +  +    +E+++  E ++ E E+ + E ++ +EE  + ++ +
Sbjct: 245 KQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHK 304

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
             + ++E +  E+E E++E E +++ E
Sbjct: 305 AFDLKQESKASEKEAEDKELEAQKKRE 331

This family consists of several Borrelia P83/P100 antigen proteins. Length = 489

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 219
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 220
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 221
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 222
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 223
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 224
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 225
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 226
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 227
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 228
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 197 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 229
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 198 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 230
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 199 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 231
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 200 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 232
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 201 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 233
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 202 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 234
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 203 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 235
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 204 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 236
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 205 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 237
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 206 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 238
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 207 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 239
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 208 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 209 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 210 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 211 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 212 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 213 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 214 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 215 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 216 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 217 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 218 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 219 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 220 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 221 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 222 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 38/94 (40%), Positives = 53/94 (56%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KE+E   EEEEE+ E+  EE  +E +E  EE EE+  E  E  EEE +EE  ++ +E   
Sbjct: 33  KEKERLREEEEEQVEQLREEANDEAKEIIEEAEEDAFEIVEAAEEEAKEELLKKTDEASS 92

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEALWGYAD 278
             E+ + + E E+EE EEE E   EE    GY +
Sbjct: 93  IIEKLQMQIEREQEEWEEELERLIEEAKAEGYEE 126

Length = 281

>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 34/86 (39%), Positives = 49/86 (56%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            +E+E   EEEEE+ E+  EE  +E +E  EE EE+  E  E  EEE +EE  ++ +E  
Sbjct: 32  IKEKERLREEEEEQVEQLREEANDEAKEIIEEAEEDAFEIVEAAEEEAKEELLKKTDEAS 91

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
              E+ + + E E+EE EEE E   E
Sbjct: 92  SIIEKLQMQIEREQEEWEEELERLIE 117

Length = 281

>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 27/77 (35%), Positives = 43/77 (55%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
           EE E+   +E  + EEE E+E E+  +EEE   +    EE  +E E++EE   +E  +EE
Sbjct: 371 EEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEE 430

Query: 249 EEEEEEGEEEEEEEEEE 265
           +E  E+ + E  E E+ 
Sbjct: 431 KELLEKLKMEASEVEKL 447

Length = 455

>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 29/84 (34%), Positives = 46/84 (54%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           E  E++ EE E+   +E  + EEE E+E E+  +EEE   +    EE  +E E++EE   
Sbjct: 364 ERLEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFL 423

Query: 248 EEEEEEEGEEEEEEEEEEEEEEEE 271
           +E  +EE E  E+ + E  E E+ 
Sbjct: 424 KELSKEEKELLEKLKMEASEVEKL 447

Length = 455

>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 28/80 (35%), Positives = 44/80 (55%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K+ EE E+   +E  + EEE E+E E+  +EEE   +    EE  +E E++EE   +E  
Sbjct: 368 KDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELS 427

Query: 245 EEEEEEEEEEGEEEEEEEEE 264
           +EE+E  E+   E  E E+ 
Sbjct: 428 KEEKELLEKLKMEASEVEKL 447

Length = 455

>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 28/88 (31%), Positives = 46/88 (52%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E++ EE E+   +E  + EEE E+E E+  +EEE   +    EE  +E E++EE   +E 
Sbjct: 367 EKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKEL 426

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            +EE+E  E  + E  E E+       +
Sbjct: 427 SKEEKELLEKLKMEASEVEKLFGRALPV 454

Length = 455

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 39.4 bits (93), Expect = 0.002
 Identities = 28/76 (36%), Positives = 49/76 (64%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
           E++E+  E     EE E E E++ EE E   +E E+ +EE EE++E+ +EEE++  EE E
Sbjct: 513 EDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAE 572

Query: 253 EEGEEEEEEEEEEEEE 268
           +E ++  +E ++E +E
Sbjct: 573 KEAQQAIKEAKKEADE 588

Length = 782

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 39.4 bits (93), Expect = 0.002
 Identities = 27/89 (30%), Positives = 50/89 (56%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            E E E++ EE E   +E E+ +EE EE++E+ +EEE++  EE E+E ++  +E ++E +
Sbjct: 528 LERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEAD 587

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E  +E  + +       +  E  E  + L
Sbjct: 588 EIIKELRQLQKGGYASVKAHELIEARKRL 616

Length = 782

>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366)

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 26/99 (26%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------------------- 226
           EEE+                 E    E E E E EEE E++                   
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKKSGMGPLLLVLAVALIGGGA 174

Query: 227 -------EEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEE 258
                  + +++E+   +++ +E +  +E+EEE++    
Sbjct: 175 YYYFKFYKPKQQEKGAPDDDLDEYDYGDEDEEEDDEPPW 213

This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 227 and 387 amino acids in length. Length = 213

>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute binding domain

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 12/71 (16%)

Query: 216 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------------EEEEEEEEEGEEEEEEEE 263
           EE  + + ++  E+E+E E E +EE ++              ++ +  +   EEE   + 
Sbjct: 542 EERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEEEEAALKM 601

Query: 264 EEEEEEEEALW 274
           +  +  E+ LW
Sbjct: 602 KMTDTSEKPLW 612

Human SGLT1 (hSGLT1) is a high-affinity/low-capacity glucose transporter, which can also transport galactose. In the transport mechanism, two Na+ ions first bind to the extracellular side of the transporter and induce a conformational change in the glucose binding site. This results in an increased affinity for glucose. A second conformational change in the transporter follows, bringing the Na+ and glucose binding sites to the inner surface of the membrane. Glucose is then released, followed by the Na+ ions. In the process, hSGLT1 is also able to transport water and urea and may be a major pathway for transport of these across the intestinal brush-border membrane. hSGLT1 is encoded by the SLC5A1 gene and expressed mostly in the intestine, but also in the trachea, kidney, heart, brain, testis, and prostate. The WHO/UNICEF oral rehydration solution (ORS) for the treatment of secretory diarrhea contains salt and glucose. The glucose, along with sodium ions, is transported by hSGLT1 and water is either co-transported along with these or follows by osmosis. Mutations in SGLT1 are associated with intestinal glucose galactose malabsorption (GGM). Up-regulation of intestinal SGLT1 may protect against enteric infections. SGLT1 is expressed in colorectal, head and neck, and prostate tumors. Epidermal growth factor receptor (EGFR) functions in cell survival by stabilizing SGLT1, and thereby maintaining intracellular glucose levels. SGLT1 is predicted to have 14 membrane-spanning regions. This subgroup belongs to the solute carrier 5 (SLC5)transporter family. Length = 635

>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 26/73 (35%), Positives = 44/73 (60%)

Query: 201 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEE 260
              E E ++ EE+EE  EE+E++E  +EEE +  ++E++EE + EEE+     + EE + 
Sbjct: 1   SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDP 60

Query: 261 EEEEEEEEEEEAL 273
           E E E + E E +
Sbjct: 61  EAEAEFDREFEKM 73

Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay. Length = 171

>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 27/71 (38%), Positives = 44/71 (61%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
              E E ++ EE+EE  EE+E++E  +EEE +  ++E++EE + EEE+     +EEE + 
Sbjct: 1   SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDP 60

Query: 250 EEEEEGEEEEE 260
           E E E + E E
Sbjct: 61  EAEAEFDREFE 71

Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay. Length = 171

>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 27/69 (39%), Positives = 44/69 (63%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            E E ++ EE+EE  EE+E++E  +EEE +  ++E++EE + EEE+     +EEE + E 
Sbjct: 3   SESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEA 62

Query: 246 EEEEEEEEE 254
           E E + E E
Sbjct: 63  EAEFDREFE 71

Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay. Length = 171

>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 26/69 (37%), Positives = 43/69 (62%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
              E E ++ EE+EE  EE+E++E  +EEE +  ++E++EE + EEE+     +EEE + 
Sbjct: 1   SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDP 60

Query: 246 EEEEEEEEE 254
           E E E + E
Sbjct: 61  EAEAEFDRE 69

Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay. Length = 171

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 205 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEE 260
            E E +        E  E EEE +E ++ + ++ EE ++  EE   +  E +  + 
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEELMFDAVEADLPDN 322

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 222 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            E E +        E  E EEE +E ++ + ++GEE ++  EE   +  EA 
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEELMFDAVEAD 318

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 28/90 (31%), Positives = 48/90 (53%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
             KE  E+E +E +E+  + +E+ +  E+E E    ++EE EEE EE E    + E    
Sbjct: 826 LEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG 885

Query: 243 EEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           + ++E +E E +  E E + EE E + E+ 
Sbjct: 886 DLKKERDELEAQLRELERKIEELEAQIEKK 915

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 19/78 (24%), Positives = 40/78 (51%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           +   E      EE  +         + +  + ++E+   + +E  +E + EE++ +EE+E
Sbjct: 166 QPWPERLHNNVEELLQSSLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQE 225

Query: 248 EEEEEEEGEEEEEEEEEE 265
           EEE EEE ++EE +  ++
Sbjct: 226 EEEVEEEAKQEEGQGTDD 243

This family consists of several mammalian specific proacrosin binding protein sp32 sequences. sp32 is a sperm specific protein which is known to bind with with 55- and 53-kDa proacrosins and the 49-kDa acrosin intermediate. The exact function of sp32 is unclear, it is thought however that the binding of sp32 to proacrosin may be involved in packaging the acrosin zymogen into the acrosomal matrix. Length = 243

>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 25/87 (28%), Positives = 45/87 (51%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
           YK+   + E +  E    E  + E +E ++EEE   +E EE E+E+++ + E  E +EE+
Sbjct: 48  YKQYLSKLESQNVEISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEK 107

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEE 270
           E+ E EE +   E    +    + E+ 
Sbjct: 108 EQLENEELQYLREYNLFDRNNLQLEDN 134

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway. Length = 356

>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 25/85 (29%), Positives = 41/85 (48%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
            +    +EEEEE  E   +E  E   E++  +E +EE +EEE++   EE   +   E + 
Sbjct: 15  PKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEEYRRKRLAEMKA 74

Query: 248 EEEEEEEGEEEEEEEEEEEEEEEEA 272
             E+ + GE  E  + +   E  EA
Sbjct: 75  LAEKSKFGEVYEISKPDYVREVTEA 99

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. Length = 192

>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 28/84 (33%), Positives = 51/84 (60%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
           + ++ E  E+  +  + + E+  ++EEEEEE+E  E+E  ++E+E +   E E   E+  
Sbjct: 93  KLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLS 152

Query: 249 EEEEEEGEEEEEEEEEEEEEEEEA 272
           ++E E+ EE++ EEEE  EE+E  
Sbjct: 153 DDETEDDEEKKMEEEEAGEEKESV 176

This family includes proteins related to Mpp10 (M phase phosphoprotein 10). The U3 small nucleolar ribonucleoprotein (snoRNP) is required for three cleavage events that generate the mature 18S rRNA from the pre-rRNA. In Saccharomyces cerevisiae, depletion of Mpp10, a U3 snoRNP-specific protein, halts 18S rRNA production and impairs cleavage at the three U3 snoRNP-dependent sites. Length = 613

>gnl|CDD|178439 PLN02847, PLN02847, triacylglycerol lipase

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 26/85 (30%), Positives = 39/85 (45%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 253
           E + E    +    ++EEEEE    E+       EEE  E E   E E+E + +E E + 
Sbjct: 457 EHKSESSSSDGSGHDDEEEEEPLLSEDRVITSSVEEEVTEGELWYELEKELQRQETEVDA 516

Query: 254 EGEEEEEEEEEEEEEEEEALWGYAD 278
           + +EEE    +E  EEE  L    +
Sbjct: 517 QAQEEEAAAAKEITEEENVLAKAVE 541

Length = 633

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 39/97 (40%), Positives = 56/97 (57%)

Query: 177 LTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 236
               +   +EE    EEE +EE E  EEE+   E+EE+ +EEE EE   E +EE++ E+ 
Sbjct: 793 KEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKL 852

Query: 237 EEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            EEE E  EEE  +EE   E   +EEE EE++ ++ L
Sbjct: 853 AEEELERLEEEITKEELLQELLLKEEELEEQKLKDEL 889

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|212103 cd10791, GH38N_AMII_like_1, N-terminal catalytic domain of mainly uncharacterized eukaryotic proteins similar to alpha-mannosidases; glycoside hydrolase family 38 (GH38)

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 18/115 (15%)

Query: 73  RVFVVPHSHNDPGWKQT---FESYFVHSTKSILDTMVTKLLEN--EKRKFIW-AEMSYL- 125
            V VV HSH D G+       + Y V      LD    +  +N  E  +F W  E ++L 
Sbjct: 1   TVHVVHHSHTDIGYTDLQEKVDRYHVDYIPQALDLA--EATKNYPEDARFRWTTESTWLV 58

Query: 126 SLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANSCNVSDNSGSTDVLTHM 180
             + K  S + ++++   V+ G++            A   N++      ++L   
Sbjct: 59  EEYLKCASPEQRERLEQAVRRGRIGW---------HALPLNITTELMDEELLRRG 104

The subfamily of mainly uncharacterized eukaryotic proteins shows sequence homology with class II alpha-mannosidases (AlphaAMIIs). AlphaAMIIs possess a-1,3, a-1,6, and a-1,2 hydrolytic activity, and catalyze the degradation of N-linked oligosaccharides. The N-terminal catalytic domain of alphaMII adopts a structure consisting of parallel 7-stranded beta/alpha barrel. This subfamily belongs to the GH38 family of retaining glycosyl hydrolases, which employ a two-step mechanism involving the formation of a covalent glycosyl enzyme complex; two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. Length = 254

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 38.9 bits (90), Expect = 0.002
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 163 NSCNVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 222
           NSC  +D         +  P    +  ++ EE  E+ + E E++  EE E E+E+E+E E
Sbjct: 560 NSCARTD--------LYFTPLASSKLAKKREEAVEKAKREAEQKAREEREREKEKEKERE 611

Query: 223 EEEEEEEE 230
            E E E E
Sbjct: 612 REREREAE 619

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 18/60 (30%), Positives = 26/60 (43%)

Query: 219 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEALWGYAD 278
            E ++E E+ +  E   + EEEE  + E EE  E E  E  EE+    E        + D
Sbjct: 374 AEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFED 433

Length = 449

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 16/88 (18%), Positives = 40/88 (45%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K+ EE   +     + + E E +      ++   E +++ E E  ++   E +++ E E 
Sbjct: 132 KQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEA 191

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
             +   E ++  E E +++   E +++A
Sbjct: 192 AAKAAAEAKKKAEAEAKKKAAAEAKKKA 219

Length = 387

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.0 bits (90), Expect = 0.003
 Identities = 29/87 (33%), Positives = 57/87 (65%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            K+ EE   EE  +  EEE++ + EE ++ EE + + EE ++ EEE+++ E+ +++E EE+
Sbjct: 1587 KKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEK 1646

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            ++ EE ++ E E + +  EE ++ EE+
Sbjct: 1647 KKAEELKKAEEENKIKAAEEAKKAEED 1673

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 38.6 bits (89), Expect = 0.003
 Identities = 31/87 (35%), Positives = 61/87 (70%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            + EE+++ EE ++ EEE + + EE ++E EE++++ EE +++EEE+++    ++EEE++ 
Sbjct: 1711 EAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKA 1770

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            EE  +E+E   EEE +EE+E+   E +
Sbjct: 1771 EEIRKEKEAVIEEELDEEDEKRRMEVD 1797

Length = 2084

>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 27/87 (31%), Positives = 46/87 (52%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K+  + +E E++EE       +  +  E  ++EE + E EE   E E EEE +EEE EE 
Sbjct: 356 KKLGKLKEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEELRRELEGEEESDEEENEEP 415

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            ++     + G E  E+E E ++ ++E
Sbjct: 416 SKKNVGRRKFGPENGEKEAESKKLKKE 442

This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome. Length = 728

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 44/88 (50%), Positives = 51/88 (57%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EEE    EEE EE +EE EE E+E EE + E EE  EE EE +EE  E +EE EE E E 
Sbjct: 245 EEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEI 304

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
               E  EE E E EE EE  EE +E +
Sbjct: 305 SLLRERLEELENELEELEERLEELKEKI 332

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 42/87 (48%), Positives = 49/87 (56%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            EE E+E EE + E EE  EE EE +EE  E +EE EE E E     E  EE E E EE 
Sbjct: 262 LEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEEL 321

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           EE  EE +E+ E  +EE EE E   EE
Sbjct: 322 EERLEELKEKIEALKEELEERETLLEE 348

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 45/87 (51%), Positives = 54/87 (62%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KE EE +EE EE E E+EE E+E +E EEE+EE EEE  E E E  E +EE E+  E  E
Sbjct: 856 KELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLE 915

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           E E + E  E E  E EEE EEE E+ 
Sbjct: 916 ELEAKLERLEVELPELEEELEEEYEDT 942

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 41/88 (46%), Positives = 51/88 (57%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EEE EE EEE EE +E  EE EEE E  EE   + +EE EE EE+ +  +EE EE EEE 
Sbjct: 743 EEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEEL 802

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           EE E   +  E E E  E+  E  E+ +
Sbjct: 803 EEAERRLDALERELESLEQRRERLEQEI 830

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 45/87 (51%), Positives = 54/87 (62%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E+E EE +EE EE E E+EE E+E +E EEE+EE EEE  E E E  E +EE E+  E  
Sbjct: 855 EKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           EE E + E  E E  E EEE EEE E 
Sbjct: 915 EELEAKLERLEVELPELEEELEEEYED 941

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 46/88 (52%), Positives = 57/88 (64%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E   +  E E E  E+  E  E+E EE EEE EE EE+ +E EEE EE E+E EE +EE 
Sbjct: 806 ERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEEL 865

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           EE E E+EE E+E +E EEE+EE EE L
Sbjct: 866 EELEAEKEELEDELKELEEEKEELEEEL 893

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 42/89 (47%), Positives = 52/89 (58%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            EEE E  EE   + +EE EE EE+ +  +EE EE EEE EE E   +  E E E  E+ 
Sbjct: 763 LEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQR 822

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            E  E+E EE EEE EE EE+ +E EE L
Sbjct: 823 RERLEQEIEELEEEIEELEEKLDELEEEL 851

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 44/89 (49%), Positives = 54/89 (60%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +E EEE EE E+E EE +EE EE E E+EE E+E +E EEE+EE EEE  E E E  E 
Sbjct: 844 LDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAEL 903

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           +EE E+  E  EE E + E  E E  E  
Sbjct: 904 KEEIEKLRERLEELEAKLERLEVELPELE 932

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 38/89 (42%), Positives = 43/89 (48%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
                EE EE  E   EE  E E E  E   E EE + E E  EE  E   E  E+ +EE
Sbjct: 367 LSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEE 426

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            +E E E EE + E EE  EE EE EE L
Sbjct: 427 LKELEAELEELQTELEELNEELEELEEQL 455

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 39/89 (43%), Positives = 50/89 (56%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
              + EE E + EE + E    EEE E+ +   EE EEE EE EEE EE +E  EE EEE
Sbjct: 707 LRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEE 766

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            E  EE   + +EE EE EE+ +  +E L
Sbjct: 767 LESLEEALAKLKEEIEELEEKRQALQEEL 795

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 43/88 (48%), Positives = 52/88 (59%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EEE E+ +   EE EEE EE EEE EE +E  EE EEE E  EE   + +EE EE EE+ 
Sbjct: 729 EEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKR 788

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           +  +EE EE EEE EE E   +  E  L
Sbjct: 789 QALQEELEELEEELEEAERRLDALEREL 816

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 44/86 (51%), Positives = 55/86 (63%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EE+ +E EEE EE E+E EE +EE EE E E+EE E+E +E EEE+EE EEE  E E E 
Sbjct: 841 EEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESEL 900

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
            E +EE E+  E  EE E + E  E 
Sbjct: 901 AELKEEIEKLRERLEELEAKLERLEV 926

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 42/87 (48%), Positives = 50/87 (57%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +EE EE E+E EE + E EE  EE EE +EE  E +EE EE E E     E  EE E E
Sbjct: 258 LQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENE 317

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            EE EE  EE +E+ E  +EE EE E 
Sbjct: 318 LEELEERLEELKEKIEALKEELEERET 344

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 45/88 (51%), Positives = 55/88 (62%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            EE EEE EE E   +  E E E  E+  E  E+E EE EEE EE EE+ +E EEE EE 
Sbjct: 795 LEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEEL 854

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E+E EE +EE EE E E+EE E+E +E 
Sbjct: 855 EKELEELKEELEELEAEKEELEDELKEL 882

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 37/88 (42%), Positives = 48/88 (54%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E + E+ EEE +  + E    E+  EE   + EE E + EE + E    EEE E+ +   
Sbjct: 680 EAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRL 739

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           EE EEE EE EEE EE +E  EE EE L
Sbjct: 740 EELEEELEELEEELEELQERLEELEEEL 767

Length = 1163

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 17/114 (14%)

Query: 176 VLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---------- 225
           V    +     E    +E  E   EE +++ EEE ++E   E  E E E           
Sbjct: 219 VEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRK 278

Query: 226 -------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
                  E+  +E E E +EE++ +++  +    +E  +E  ++E+    ++E 
Sbjct: 279 TKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQ 332

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|220102 pfam09073, BUD22, BUD22

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 22/88 (25%), Positives = 43/88 (48%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            + EE  E++ ++EEEE+ + E+  + +    +  +EEE EE       E+  E E +E 
Sbjct: 181 SKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDEEEGEEAPSINYNEDTSESESDES 240

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           + E  E     + EE     ++ +E++ 
Sbjct: 241 DSEISESRSVSDSEESSPPSKKPKEKKT 268

BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal. More recently it has been shown to be involved in ribosome biogenesis. Length = 424

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 38.6 bits (91), Expect = 0.003
 Identities = 28/81 (34%), Positives = 49/81 (60%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
            +K   E E+E  E   E ++ E+   ++EE  + + E  E+ EEE E++E+E E++++E
Sbjct: 66  IHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQE 125

Query: 243 EEEEEEEEEEEEGEEEEEEEE 263
            E++EEE EE   E+ +E E 
Sbjct: 126 LEKKEEELEELIEEQLQELER 146

Length = 520

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 22/88 (25%), Positives = 54/88 (61%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K++++E+ +EE ++ + +EE +E+   +E+E+E+E++ EE  + EEE++ E    +   +
Sbjct: 117 KKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPK 176

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           +  +++   + +E  EEE++ +   E  
Sbjct: 177 KPPKKKPPNKKKEPPEEEKQRQAAREAV 204

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 227 EEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEE 267
           +++  +EE +E    + +    EEEEEE EEEEEEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 22/51 (43%), Positives = 30/51 (58%)

Query: 225 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEALWG 275
           +++  +EE +E    + +    EEEEEEEE EEEEE  EEE      AL+G
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEAAAGLGALFG 330

Length = 330

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 221 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEE 262
            ++  E+EE E++  +E+EE+E   EE+E E  E EE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 19/42 (45%), Positives = 28/42 (66%)

Query: 218 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEE 259
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 217 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEE 258
            ++  E+EE E++  +E+EE+E   EE+E E  EEEE+ E E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 220 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEE 261
            ++  E+EE E++  +E+EE+E   EE+E E  EE E+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|235285 PRK04335, PRK04335, cell division protein ZipA; Provisional

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 27/95 (28%), Positives = 44/95 (46%)

Query: 166 NVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 225
           N   +    D L       +E++ E+EE     + + + + E+ E + EE  +EE  EE 
Sbjct: 82  NSFHDPLIDDPLFGGELEEEEDKFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEP 141

Query: 226 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEE 260
           E    +    E + EEE E E +E EE + E E +
Sbjct: 142 EPVAAKVPMAEVQPEEETEIEVDEPEEPKPEPELD 176

Length = 313

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 17/82 (20%), Positives = 51/82 (62%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
           ++    + ++   ++ E++ +++EE+  EE + ++  E+E  ++ E+E  + +E++++ E
Sbjct: 62  QQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAE 121

Query: 252 EEEGEEEEEEEEEEEEEEEEAL 273
           E E + + E++++EE+  + A 
Sbjct: 122 EAEKQAQLEQKQQEEQARKAAA 143

Length = 387

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 19/88 (21%), Positives = 51/88 (57%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            ++ E+E  + +E++++ EE E++ + E++++EE+  +   E++++ E  + +   E  +
Sbjct: 103 LKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAK 162

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            +   E +++ EE  +  EE + + E A
Sbjct: 163 LKAAAEAKKKAEEAAKAAEEAKAKAEAA 190

Length = 387

>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated

 Score = 38.6 bits (91), Expect = 0.003
 Identities = 19/71 (26%), Positives = 33/71 (46%)

Query: 181 MPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240
           +    E  +  E  E    E  +   +   EE+      E EE +++E+EEEEE+E ++ 
Sbjct: 149 IDAILEWYDRLENGERRLRELIDGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDS 208

Query: 241 EEEEEEEEEEE 251
              +E E  E+
Sbjct: 209 LAADESELPEK 219

Length = 619

>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 26/85 (30%), Positives = 43/85 (50%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           KE+ EE   + EEE     E +E   E++   E E E+EE  ++ EE+  +E E + E  
Sbjct: 195 KEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAH 254

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEE 269
           E++ + E      E + E  +E +E
Sbjct: 255 EQKLKNELALQAIELQREFNKEIKE 279

Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 18/55 (32%), Positives = 22/55 (40%)

Query: 212 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEE 266
               EE  E  E  EEE          EEEEE E E+EE  EE +  + +     
Sbjct: 12  AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 18/62 (29%), Positives = 23/62 (37%)

Query: 213 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
               EE  E  E  EEE          EEEEE E E+EE  E  +  + +      +  A
Sbjct: 12  AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPGSDFSA 71

Query: 273 LW 274
             
Sbjct: 72  FL 73

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 18/55 (32%), Positives = 22/55 (40%)

Query: 202 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGE 256
               EE  E  E  EEE          EEEEE E E+EE  EE +  + +     
Sbjct: 12  AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 18/55 (32%), Positives = 22/55 (40%)

Query: 207 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEE 261
               EE  E  E  EEE          EEEEE E E+EE  EE +  + +     
Sbjct: 12  AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 27/89 (30%), Positives = 46/89 (51%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            K+E   E +EE  +   E E E +E   E +  E    + EE  + + E  +++EE  E
Sbjct: 48  LKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLE 107

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           ++E+E   +E+  +E+EEE EE   E+  
Sbjct: 108 KKEKELSNKEKNLDEKEEELEELIAEQRE 136

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 34/87 (39%), Positives = 43/87 (49%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           EE EEE E+  +E EE   +     ++    E E E+ EE   +  +E  E E E EE E
Sbjct: 708 EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E  EE EE   E E E EE E + E L
Sbjct: 768 ERLEEAEEELAEAEAEIEELEAQIEQL 794

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 32/89 (35%), Positives = 44/89 (49%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            +EE E+  +E EE   +     ++    E E E+ EE   +  +E  E E E EE EE 
Sbjct: 710 LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            EE EEE  E   E EE E + E+ +EE 
Sbjct: 770 LEEAEEELAEAEAEIEELEAQIEQLKEEL 798

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 32/84 (38%), Positives = 39/84 (46%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
               E E E+ EE   +  +E  E E E EE EE  EE EEE  E E E EE E + E+ 
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEE 267
           +EE +   E   E   E     EE
Sbjct: 795 KEELKALREALDELRAELTLLNEE 818

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 33/86 (38%), Positives = 44/86 (51%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           ++ EE E + EE E + +E  EE  E EE+ EE +EE E  E E EE E E EE E   E
Sbjct: 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE 375

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEE 270
           E EE+ E    +  + E +      E
Sbjct: 376 ELEEQLETLRSKVAQLELQIASLNNE 401

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 25/82 (30%), Positives = 45/82 (54%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +E E   ++ EE   E+++ +E  E + E EE     E+  +EE ++  E ++++ EE 
Sbjct: 503 DDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADKKKVEEA 562

Query: 245 EEEEEEEEEEGEEEEEEEEEEE 266
            E  +EE E  ++EE E + EE
Sbjct: 563 IEWLKEELEGEDKEEIEAKTEE 584

Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 30/67 (44%), Positives = 44/67 (65%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 252
           EEE EE+E        EEEE++EE E EEEEEEEE + + ++ E++E E ++EEE E+E 
Sbjct: 19  EEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKEL 78

Query: 253 EEGEEEE 259
           +  E  +
Sbjct: 79  QREERLK 85

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

 Score = 39.0 bits (90), Expect = 0.003
 Identities = 27/102 (26%), Positives = 46/102 (45%)

Query: 170 NSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 229
             G  +++        E+ E+EE   + E EE        E EE  +E + E E EE   
Sbjct: 589 IEGEEELIQDDEKGNFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETEREENAR 648

Query: 230 EEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
           ++EE     E EE  + E+++ +   EE+ + EE+ +    E
Sbjct: 649 KKEELRGNFELEERGDPEKKDVDWYTEEKRKIEEQLKINRSE 690

Length = 1077

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 27/58 (46%), Positives = 34/58 (58%)

Query: 181 MPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 238
           M    E+ EEE EE E EE  E+E EEE  EEE E E  +EE+ +  E E + +E EE
Sbjct: 1   MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58

Length = 191

>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 23/90 (25%), Positives = 42/90 (46%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
           F + + E + E  +EE+E +   ++++  + ++  ++   E E++  E   E   E++  
Sbjct: 94  FTEAQAEAKFEAWKEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAA 153

Query: 243 EEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E      EE    EEEE EE   EE   E 
Sbjct: 154 EAAAVAAEEAAAAEEEEAEEAPAEEAPAEE 183

Length = 186

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 21/55 (38%), Positives = 37/55 (67%)

Query: 213 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEE 267
           EEEEE+  +  EEE +EE +E++EE+++EE E +  +   EE  + EE+E +++ 
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 21/55 (38%), Positives = 38/55 (69%)

Query: 212 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEE 266
           EEEEE+  +  EEE +EE +E++EE+++EE E +  +   EE+ + EE+E +++ 
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 16/94 (17%), Positives = 52/94 (55%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           +++ +E  ++++E +   +  +    +E+++  E ++ E E+ + E ++ +EE  + ++ 
Sbjct: 244 DKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDH 303

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEALWGYADM 279
           +  + ++E    E+E E++E E +++      D+
Sbjct: 304 KAFDLKQESKASEKEAEDKELEAQKKREPVAEDL 337

This family consists of several Borrelia P83/P100 antigen proteins. Length = 489

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 12/80 (15%), Positives = 36/80 (45%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E   EE + E E  EE+ +   E E   E    + +E+ + E++ ++ + + + + + + 
Sbjct: 50  EAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKP 109

Query: 246 EEEEEEEEEGEEEEEEEEEE 265
           + + + + +    +   +  
Sbjct: 110 KVKPQPKPKKPPSKTAAKAP 129

Length = 244

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 13/83 (15%), Positives = 38/83 (45%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K  E   EE + E E  EE+ +   E E   E    + +E+ + E++ ++ + + + + +
Sbjct: 47  KVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPK 106

Query: 245 EEEEEEEEEEGEEEEEEEEEEEE 267
            + + + + + ++   +   +  
Sbjct: 107 PKPKVKPQPKPKKPPSKTAAKAP 129

Length = 244

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 12/82 (14%), Positives = 37/82 (45%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
             E   EE + E E  EE+ +   E E   E    + +E+ + E++ ++ + + + + + 
Sbjct: 48  VLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKP 107

Query: 248 EEEEEEEGEEEEEEEEEEEEEE 269
           + + + + + ++   +   +  
Sbjct: 108 KPKVKPQPKPKKPPSKTAAKAP 129

Length = 244

>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 36/105 (34%), Positives = 55/105 (52%)

Query: 166 NVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 225
             S+      + TH +  Y+ +    +E+E   EEEEE+ E+  EE  +E +E  EE EE
Sbjct: 7   KRSNVINKEKLKTHEIQKYRFKVLSIKEKERLREEEEEQVEQLREEANDEAKEIIEEAEE 66

Query: 226 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEE 270
           +  E  E  EEE +EE  ++ +E     E  + + E E+EE EEE
Sbjct: 67  DAFEIVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEE 111

Length = 281

>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572)

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
             E ++ +EE+EE  E+E EEE   +  ++ E    + + E E  E  EE +E +    +
Sbjct: 107 NYEADKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLERLEELKELQSRRAD 166

Query: 251 EEEEG-----EEEEEEEEEEEEEEEEAL 273
            +           E++EEEEEEEE+EAL
Sbjct: 167 VDVNSMLEALFRREKKEEEEEEEEDEAL 194

Family of eukaryotic proteins with undetermined function. Length = 321

>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572)

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 28/90 (31%), Positives = 45/90 (50%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           + +EE+EE  E+E EEE   +  ++ E    + + E E  E  EE +E +    + +   
Sbjct: 112 KLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLERLEELKELQSRRADVDVNS 171

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEALWG 275
             E     E +EEEEEEEE+E   +   +G
Sbjct: 172 MLEALFRREKKEEEEEEEEDEALIKSLSFG 201

Family of eukaryotic proteins with undetermined function. Length = 321

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 230 EEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEE 269
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 25/88 (28%), Positives = 50/88 (56%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E++ EE E   +E E+ +EE EE++E+ +EEE++  EE E+E ++  +E ++E +E  +E
Sbjct: 533 EQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKE 592

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
             + ++      +  E  E  +   +A 
Sbjct: 593 LRQLQKGGYASVKAHELIEARKRLNKAN 620

Length = 782

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 29/81 (35%), Positives = 51/81 (62%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K+   E++E+  E     EE E E E++ EE E   +E E+ +EE EE++E+ +EEE++ 
Sbjct: 508 KKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKL 567

Query: 245 EEEEEEEEEEGEEEEEEEEEE 265
            EE E+E ++  +E ++E +E
Sbjct: 568 LEEAEKEAQQAIKEAKKEADE 588

Length = 782

>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 27/71 (38%), Positives = 44/71 (61%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEG 255
              E E ++ EE+EE  EE+E++E  +EEE +  ++E++EE + EEE+     +EEE + 
Sbjct: 1   SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDP 60

Query: 256 EEEEEEEEEEE 266
           E E E + E E
Sbjct: 61  EAEAEFDREFE 71

Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay. Length = 171

>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 27/71 (38%), Positives = 44/71 (61%)

Query: 198 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEE 257
              E E ++ EE+EE  EE+E++E  +EEE +  ++E++EE + EEE+     +EEE + 
Sbjct: 1   SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDP 60

Query: 258 EEEEEEEEEEE 268
           E E E + E E
Sbjct: 61  EAEAEFDREFE 71

Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay. Length = 171

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 216 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            E E +        E  E EEE +E ++ + ++ EE ++  EE   +  E +  +  L
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEELMFDAVEADLPDNIL 324

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 232
           K    +EEEEE  E   +E  E   E++  +E +EE +EEE++   EE
Sbjct: 16  KPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEE 63

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. Length = 192

>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 30/87 (34%), Positives = 54/87 (62%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           + ++ E  E+  +  + + E+  ++EEEEEE+E  E+E  ++E+E +   E E   E+  
Sbjct: 93  KLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLS 152

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           ++E E++EE + EEEE  EE+E  E+A
Sbjct: 153 DDETEDDEEKKMEEEEAGEEKESVEQA 179

This family includes proteins related to Mpp10 (M phase phosphoprotein 10). The U3 small nucleolar ribonucleoprotein (snoRNP) is required for three cleavage events that generate the mature 18S rRNA from the pre-rRNA. In Saccharomyces cerevisiae, depletion of Mpp10, a U3 snoRNP-specific protein, halts 18S rRNA production and impairs cleavage at the three U3 snoRNP-dependent sites. Length = 613

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 38/93 (40%), Positives = 58/93 (62%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +  EEE+   E+EE+ +EEE EE   E +EE++ E+  EEE E  EEE  +EE  +E   
Sbjct: 816 ELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLL 875

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEALWGYA 277
           +EEE EE++  +E E +EE+E+EE++E      
Sbjct: 876 KEEELEEQKLKDELESKEEKEKEEKKELEEESQ 908

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 35/78 (44%), Positives = 48/78 (61%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254
           ++E++ EE + EE EE E+ EEEE EEEE EEE E EEE++E  E E + EE +++    
Sbjct: 3   DKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRA 62

Query: 255 GEEEEEEEEEEEEEEEEA 272
             E E   +  E E EEA
Sbjct: 63  QAEFENLRKRTEREREEA 80

Length = 193

>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 34/77 (44%), Positives = 48/77 (62%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
           ++E++ EE + EE EE E+ EEEE EEEE EEE E EEE++E  E E + EE +++    
Sbjct: 3   DKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRA 62

Query: 252 EEEGEEEEEEEEEEEEE 268
           + E E   +  E E EE
Sbjct: 63  QAEFENLRKRTEREREE 79

Length = 193

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 23/91 (25%), Positives = 39/91 (42%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
              E E++      + E      +E  +  +  E+  E  E  E++E +   EE  +EE 
Sbjct: 293 SLNEFEQDAVPLLVDLERNGNRIKELADFGDYYEDIFEVVEVVEKQEGDVVTEESTDEES 352

Query: 243 EEEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E+E E +E   E   E E  E + ++  E L
Sbjct: 353 EDEVEIDESVIEEVAEMELLEVQVDDLAERL 383

Length = 388

>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 23/82 (28%), Positives = 42/82 (51%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
           Y+ E+    +   E   +E  E    EEE E +++  E+  E+E+  EE E+   EE +E
Sbjct: 287 YRTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKE 346

Query: 244 EEEEEEEEEEEGEEEEEEEEEE 265
              + EE +++ E+ E+  E+ 
Sbjct: 347 LNSKLEEIQKKLEDLEKRLEKL 368

Length = 373

>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 20/92 (21%), Positives = 47/92 (51%)

Query: 181 MPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240
           +  +++E E++  E+ +    E ++++       +     +  EE  ++  EE+ +EE+ 
Sbjct: 177 LDLWRDEIEDKAGEDLDGLAAEIDDQQAFARVVRDMLGSMDMAEETGDDGIEEDADEEDG 236

Query: 241 EEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           ++++ +  E+ E   EE E  +E EE+E E  
Sbjct: 237 DDDQPDNNEDSEAGREESEGSDESEEDEAEAT 268

Length = 620

>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 17/87 (19%), Positives = 46/87 (52%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
            E EE E   + ++E +   E+ ++    +   E +E+++EE+E + +  EE+    + +
Sbjct: 61  AELEEAERAHKSKKENKLAIEDADKSTNLDASNEGDEDDDEEDEIKRKRIEEDARNSDAD 120

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           + +   +    +++ ++++ E+E  AL
Sbjct: 121 DSDSSSDSDSSDDDSDDDDSEDETAAL 147

This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing. Length = 241

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 38.6 bits (89), Expect = 0.004
 Identities = 32/87 (36%), Positives = 63/87 (72%)

Query: 185  KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            +E +++E EE+++ EE ++ EEE + + EE ++E EE++++ EE +++EEE+++    ++
Sbjct: 1705 EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKK 1764

Query: 245  EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            EEE++ EE   E+E   EEE +EE+E+
Sbjct: 1765 EEEKKAEEIRKEKEAVIEEELDEEDEK 1791

Length = 2084

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 17/85 (20%), Positives = 41/85 (48%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E  E  EE      + +++  E  E ++ E  E+   ++E+++    E +    +E+ + 
Sbjct: 631 EGRENREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQA 690

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEE 270
           ++E +     E+  +E E+EE  ++
Sbjct: 691 QQEAKALNVEEQSVQETEQEERVQQ 715

Length = 1068

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 45/95 (47%), Positives = 56/95 (58%)

Query: 177 LTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 236
           L   +   KEE EE EE+ +  +EE EE EEE EE E   +  E E E  E+  E  E+E
Sbjct: 770 LEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQE 829

Query: 237 EEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            EE EEE EE EE+ +E  EE EE E+E EE +EE
Sbjct: 830 IEELEEEIEELEEKLDELEEELEELEKELEELKEE 864

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 38/89 (42%), Positives = 45/89 (50%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            EE  E   EE  E E E  E   E EE + E E  EE  E   E  E+ +EE +E E E
Sbjct: 374 LEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAE 433

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            EE + E EE  EE EE EE+ EE  + L
Sbjct: 434 LEELQTELEELNEELEELEEQLEELRDRL 462

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 39/89 (43%), Positives = 48/89 (53%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
             E+  EE   + EE E + EE + E    EEE E+ +   EE EEE EE EEE EE +E
Sbjct: 699 SLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQE 758

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
             EE EEE E  EE   + +EE EE E  
Sbjct: 759 RLEELEEELESLEEALAKLKEEIEELEEK 787

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 42/89 (47%), Positives = 51/89 (57%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           + +EE EE E+E EE + E EE  EE EE +EE  E +EE EE E E     E  EE E 
Sbjct: 257 ELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELEN 316

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E EE EE  E  +E+ E  +EE EE E L
Sbjct: 317 ELEELEERLEELKEKIEALKEELEERETL 345

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 41/88 (46%), Positives = 50/88 (56%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            EE +E  EE EEE E  EE   + +EE EE EE+ +  +EE EE EEE EE E   +  
Sbjct: 753 LEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDAL 812

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E E E  E+  E  E+E EE EEE EE 
Sbjct: 813 ERELESLEQRRERLEQEIEELEEEIEEL 840

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 43/87 (49%), Positives = 55/87 (63%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            +E E   +  E E E  E+  E  E+E EE EEE EE EE+ +E EEE EE E+E EE 
Sbjct: 802 LEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEEL 861

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEE 270
           +EE EE E E+ E E+E +E EEE+EE
Sbjct: 862 KEELEELEAEKEELEDELKELEEEKEE 888

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 45/87 (51%), Positives = 56/87 (64%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           +  E E E  E+  E  E+E EE EEE EE EE+ +E EEE EE E+E EE +EE EE E
Sbjct: 810 DALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELE 869

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEEAL 273
            E+EE E+  +E EEE+EE EEE   L
Sbjct: 870 AEKEELEDELKELEEEKEELEEELREL 896

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 45/88 (51%), Positives = 55/88 (62%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            EE E   +  E E E  E+  E  E+E EE EEE EE EE+ +E EEE EE E+E EE 
Sbjct: 802 LEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEEL 861

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           +EE EE E E EE E+E +E EEE+EE 
Sbjct: 862 KEELEELEAEKEELEDELKELEEEKEEL 889

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 47/88 (53%), Positives = 58/88 (65%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
             +E EE EEE EE EE+ +E EEE EE E+E EE +EE EE E E+EE E+E +E EEE
Sbjct: 826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEE 885

Query: 243 EEEEEEEEEEEEGEEEEEEEEEEEEEEE 270
           +EE EEE  E E E  E +EE E+  E 
Sbjct: 886 KEELEEELRELESELAELKEEIEKLRER 913

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 40/89 (44%), Positives = 49/89 (55%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E E+ +   EE EEE EE EEE EE +E  EE EEE E  EE   + +EE EE EE+ + 
Sbjct: 731 ELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQA 790

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEALW 274
            +EE EE E E EE E   +  E E    
Sbjct: 791 LQEELEELEEELEEAERRLDALERELESL 819

Length = 1163

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 9/39 (23%), Positives = 19/39 (48%)

Query: 240 EEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEALWGYAD 278
              +  EEE        E++++  E+EEE+++A     +
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALE 298

Length = 584

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 38.6 bits (89), Expect = 0.004
 Identities = 42/91 (46%), Positives = 48/91 (52%)

Query: 181  MPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240
            +P + +E  E   EE+ EE  EE+ EE  EE  EE  EE  EE  EE  EE  EE  EE 
Sbjct: 935  VPEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEEN 994

Query: 241  EEEEEEEEEEEEEEGEEEEEEEEEEEEEEEE 271
             EE  EE  EE  E   EE  EE  EE +EE
Sbjct: 995  VEENVEENIEENVEENVEENIEENVEEYDEE 1025

Length = 1136

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 38.6 bits (89), Expect = 0.004
 Identities = 37/73 (50%), Positives = 39/73 (53%)

Query: 184  YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            Y EE  EE EE  EE  EE  EE  EE  EE EE  EE  EE  EE  EE  EE  EE +
Sbjct: 1064 YDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEENAEENAEEYD 1123

Query: 244  EEEEEEEEEEEGE 256
            +E  EE  EE  E
Sbjct: 1124 DENPEEHNEEYDE 1136

Length = 1136

>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 16/67 (23%), Positives = 32/67 (47%)

Query: 179 HMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 238
           +++       E++ ++    E+ E E    EE E EEE E+ E+E +  +   +++E E 
Sbjct: 351 YILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELEN 410

Query: 239 EEEEEEE 245
                +E
Sbjct: 411 HFRAADE 417

Length = 776

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 22/88 (25%), Positives = 56/88 (63%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           ++++++E+ +EE ++ + +EE +E+   +E+E+E+E++ EE  + EEE++ E    +   
Sbjct: 116 EKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRP 175

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           ++  +++    ++E  EEE++ +   EA
Sbjct: 176 KKPPKKKPPNKKKEPPEEEKQRQAAREA 203

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]

 Score = 38.5 bits (89), Expect = 0.004
 Identities = 20/87 (22%), Positives = 47/87 (54%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           K   + E++ ++ E +  E++  +   ++E + +  ++E+ + E  +E ++EE  +E   
Sbjct: 696 KSRPDVEDDSDDSELDFAEDDFSDSTSDDEPKLDAIDDEDAKSEGSQESDQEEGLDEIFY 755

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
             + E++  +   E  EE+E  EEE+E
Sbjct: 756 SFDGEQDNSDSFAESSEEDESSEEEKE 782

Length = 821

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 222 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEE 262
           +++  +EE +E    + +    EEEEEEEEEEE EE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 37.5 bits (88), Expect = 0.004
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 223 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEE 263
           +++  +EE +E    + +    EEEEEEEEEE EEE  EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 222 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEE 263
            ++  E+EE E++  +E+EE+E   EE+E E   EEE+EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 219 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEE 260
            ++  E+EE E++  +E+EE+E   EE+E E  EEE +EE E
Sbjct: 31  AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72

The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281

>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2)

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 21/87 (24%), Positives = 39/87 (44%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E +   + +  +E EE  E +    E E  +E E+   +E EE+      EEE++ ++ +
Sbjct: 671 ELQVPSKSQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFK 730

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
            E ++   E  E  E     E+   +A
Sbjct: 731 NEWQDISLEELEALEANLLAEQNSLKA 757

All proteins in this family for which functions are known are flap endonucleases that generate the 3' incision next to DNA damage as part of nucleotide excision repair. This family is related to many other flap endonuclease families including the fen1 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1034

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 19/87 (21%), Positives = 47/87 (54%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           EE E++ + E++++EE+  +   E++++ E  + +   E  + +   E +++ EE  +  
Sbjct: 121 EEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAA 180

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           EE + + E    +++ E E +   E+A
Sbjct: 181 EEAKAKAEAAAAKKKAEAEAKAAAEKA 207

Length = 387

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 19/86 (22%), Positives = 49/86 (56%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           E++++ EE E++ + E++++EE+  +   E++++ E  + +   E  + +   E +++ E
Sbjct: 115 EQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAE 174

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E  +  EE + + E    +++ E EA
Sbjct: 175 EAAKAAEEAKAKAEAAAAKKKAEAEA 200

Length = 387

>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306)

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 18/55 (32%), Positives = 22/55 (40%)

Query: 203 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEE 257
               EE  E  E  EEE          EEEEE E E+EE  EE +  + +     
Sbjct: 12  AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66

This family of proteobacterial species proteins has no known function. Length = 115

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 27/86 (31%), Positives = 45/86 (52%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           E +EE  +   E E E +E   E +  E    + EE  + + E  +++EE  E++E+E  
Sbjct: 55  EAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELS 114

Query: 246 EEEEEEEEEGEEEEEEEEEEEEEEEE 271
            +E+  +E+ EE EE   E+ EE E 
Sbjct: 115 NKEKNLDEKEEELEELIAEQREELER 140

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 31/88 (35%), Positives = 35/88 (39%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            EE  E+ E    E EE EE  EE E E E    E    EE       E EE  EE  E 
Sbjct: 847 IEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELREL 906

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E +  E   E EE  E+  + E   E  
Sbjct: 907 ESKRSELRRELEELREKLAQLELRLEGL 934

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 34/90 (37%), Positives = 38/90 (42%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
             E   E+ EE+ EE  E+ E    E EE EE  EE E E E    E    EE       
Sbjct: 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRS 894

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E EE  EE  E E +  E   E EE  E L
Sbjct: 895 ELEELSEELRELESKRSELRRELEELREKL 924

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 31/89 (34%), Positives = 34/89 (38%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
             E  E  E      E   E+ EE+ EE  E+ E    E EE EE  EE E E E    E
Sbjct: 822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE 881

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
               EE       E EE  EE  E E   
Sbjct: 882 RASLEEALALLRSELEELSEELRELESKR 910

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 31/87 (35%), Positives = 42/87 (48%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           ++   E  +E EE EEE E+  +E EE   +     ++    E E E+ EE   +  +E 
Sbjct: 697 EKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
            E E E EE  E  EE EEE  E E E
Sbjct: 757 TELEAEIEELEERLEEAEEELAEAEAE 783

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 32/88 (36%), Positives = 42/88 (47%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           E+   E  +E EE EEE E+  +E EE   +     ++    E E E+ EE   +  +E 
Sbjct: 697 EKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEEALW 274
            E E E E  EE  EE EEE  E EA  
Sbjct: 757 TELEAEIEELEERLEEAEEELAEAEAEI 784

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 30/85 (35%), Positives = 40/85 (47%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
              ++    E E E+ EE   +  +E  E E E EE EE  EE EEE  E E E EE E 
Sbjct: 730 ALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA 789

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEE 271
           + E+ +EE +   E  +E   E   
Sbjct: 790 QIEQLKEELKALREALDELRAELTL 814

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 31/88 (35%), Positives = 42/88 (47%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            EE   +     ++    E E E+ EE   +  +E  E E E EE EE  EE EEE  E 
Sbjct: 721 LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA 780

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           E E EE E + E+ +EE +   E  +E 
Sbjct: 781 EAEIEELEAQIEQLKEELKALREALDEL 808

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740)

 Score = 38.1 bits (88), Expect = 0.004
 Identities = 24/70 (34%), Positives = 37/70 (52%)

Query: 200 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEE 259
           +++EE         E + E  +    +   EEEEE E EE+EE  E+E  +  +E  EEE
Sbjct: 111 DDDEENLPSSIAPPEIDPEPRKPIVPDLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEE 170

Query: 260 EEEEEEEEEE 269
           EEEE +  ++
Sbjct: 171 EEEELKTMKD 180

This family consists of several uncharacterized plant proteins of unknown function. Length = 565

>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 20/86 (23%), Positives = 43/86 (50%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
             +++   +E++          ++E E   ++ EE   E+++ +E  E + E EE     
Sbjct: 481 SAKDKGTGKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSL 540

Query: 248 EEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E+  +EEG++  E ++++ EE  E L
Sbjct: 541 EKSLKEEGDKLPEADKKKVEEAIEWL 566

Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 27/55 (49%), Positives = 34/55 (61%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 239
           K E+ EEE EE E EE  E+E EEE  EEE E E  +EE+ +  E E + +E EE
Sbjct: 4   KNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58

Length = 191

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 22/55 (40%), Positives = 39/55 (70%)

Query: 218 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           EEEEE+  +  EEE +EE +E++EE+++EE E +  +   EE+ + EE+E +++A
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 37.5 bits (88), Expect = 0.004
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 229 EEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEE 261
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score = 37.5 bits (88), Expect = 0.004
 Identities = 22/33 (66%), Positives = 23/33 (69%)

Query: 226 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEE 258
           +    E  EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258

Length = 258

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 12/82 (14%), Positives = 36/82 (43%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
             E   EE + E E  EE+ +   E E   E    + +E+ + E++ ++ + + + + + 
Sbjct: 48  VLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKP 107

Query: 249 EEEEEEGEEEEEEEEEEEEEEE 270
           + + +   + ++   +   +  
Sbjct: 108 KPKVKPQPKPKKPPSKTAAKAP 129

Length = 244

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 225
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 226
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 227
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 228
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 229
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 230
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 231
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 232
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 233
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 234
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 235
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 197 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 236
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 198 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 237
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 199 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 238
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 200 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 239
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 201 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 202 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 203 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 204 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 205 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 206 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 207 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 208 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 247
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 209 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 210 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 211 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 250
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 222 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEE 261
           ++ ++EEEE    +E++++E++  + ++++EEE + E E 
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
           E  E++ EE E+   +E  + EEE E+E E+  +EEE   +    EE  +E E++EE   
Sbjct: 364 ERLEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFL 423

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEE 270
           +E  +EE+   E+ + E  E E+ 
Sbjct: 424 KELSKEEKELLEKLKMEASEVEKL 447

Length = 455

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 27/76 (35%), Positives = 48/76 (63%)

Query: 197 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGE 256
           E++E+  E     EE E E E++ EE E   +E E+ +EE EE++E+ +EEE++  EE E
Sbjct: 513 EDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAE 572

Query: 257 EEEEEEEEEEEEEEEA 272
           +E ++  +E ++E + 
Sbjct: 573 KEAQQAIKEAKKEADE 588

Length = 782

>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 26/91 (28%), Positives = 56/91 (61%)

Query: 169 DNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 228
            +S      T+ +P   +++ +  EE  E+E  +    +++  +  + + ++ ++EE+++
Sbjct: 195 KDSLGNGSSTNGLPDSSQDKNKSLEEYYEKESSDAAASQDDGPKGSDVKNKKSDDEEDDD 254

Query: 229 EEEEEEEEEEEEEEEEEEEEEEEEEEGEEEE 259
           ++ +  EE+E +E+EEEEE EEEEEE +E+E
Sbjct: 255 QDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285

PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast, and may confer resistance in higher eukaryotes. Length = 285

>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 23/74 (31%), Positives = 50/74 (67%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEG 255
           +++ +  EE  E+E  +    +++  +  + + ++ ++EE+++++ +  EE+E +E+EE 
Sbjct: 212 QDKNKSLEEYYEKESSDAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEE 271

Query: 256 EEEEEEEEEEEEEE 269
           EE EEEEEEE+E+E
Sbjct: 272 EETEEEEEEEDEDE 285

PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast, and may confer resistance in higher eukaryotes. Length = 285

>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 23/74 (31%), Positives = 50/74 (67%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
           +++ +  EE  E+E  +    +++  +  + + ++ ++EE+++++ +  EE+E +E+EEE
Sbjct: 212 QDKNKSLEEYYEKESSDAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEE 271

Query: 252 EEEGEEEEEEEEEE 265
           EE  EEEEEE+E+E
Sbjct: 272 EETEEEEEEEDEDE 285

PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast, and may confer resistance in higher eukaryotes. Length = 285

>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 33/89 (37%), Positives = 46/89 (51%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
              + + + EEEE  EE +  EEEE+EE   +   E   E  EEEEEE E  ++ E+  +
Sbjct: 168 PPAQPDVDNEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVD 227

Query: 247 EEEEEEEEGEEEEEEEEEEEEEEEEALWG 275
            E E  ++ + EEEE EEE     E  W 
Sbjct: 228 YEGERIDKKQGEEEEMEEEVINLFEIEWE 256

Length = 279

>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366)

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 29/104 (27%)

Query: 180 MMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-------------- 225
           ++   +EE+                 E    E E E E EEE E++              
Sbjct: 110 LLALMEEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKKSGMGPLLLVLAVAL 169

Query: 226 ---------------EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254
                          ++E+   +++ +E +  +E+EEE++E   
Sbjct: 170 IGGGAYYYFKFYKPKQQEKGAPDDDLDEYDYGDEDEEEDDEPPW 213

This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 227 and 387 amino acids in length. Length = 213

>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 27/71 (38%), Positives = 44/71 (61%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 251
              E E ++ EE+EE  EE+E++E  +EEE +  ++E++EE + EEE+     +EEE + 
Sbjct: 1   SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDP 60

Query: 252 EEEGEEEEEEE 262
           E E E + E E
Sbjct: 61  EAEAEFDREFE 71

Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay. Length = 171

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 228
            E E +        E  E EEE +E ++ + ++ EE ++  EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 187 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 229
            E E +        E  E EEE +E ++ + ++ EE ++  EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 188 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 230
            E E +        E  E EEE +E ++ + ++ EE ++  EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 231
            E E +        E  E EEE +E ++ + ++ EE ++  EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 232
            E E +        E  E EEE +E ++ + ++ EE ++  EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 191 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 233
            E E +        E  E EEE +E ++ + ++ EE ++  EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 192 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 234
            E E +        E  E EEE +E ++ + ++ EE ++  EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 193 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 235
            E E +        E  E EEE +E ++ + ++ EE ++  EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 194 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 236
            E E +        E  E EEE +E ++ + ++ EE ++  EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 195 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 237
            E E +        E  E EEE +E ++ + ++ EE ++  EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 238
            E E +        E  E EEE +E ++ + ++ EE ++  EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 197 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 239
            E E +        E  E EEE +E ++ + ++ EE ++  EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 198 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 240
            E E +        E  E EEE +E ++ + ++ EE ++  EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 199 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 241
            E E +        E  E EEE +E ++ + ++ EE ++  EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 200 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
            E E +        E  E EEE +E ++ + ++ EE ++  EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 201 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
            E E +        E  E EEE +E ++ + ++ EE ++  EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 202 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
            E E +        E  E EEE +E ++ + ++ EE ++  EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 203 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
            E E +        E  E EEE +E ++ + ++ EE ++  EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 204 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 246
            E E +        E  E EEE +E ++ + ++ EE ++  EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 28/90 (31%), Positives = 50/90 (55%)

Query: 184 YKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 243
           Y E+E +E +E+  + +E+ +  E+E E    ++EE EEE EE E    + E    + ++
Sbjct: 830 YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKK 889

Query: 244 EEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           E +E E +  E E + EE E + E++ + L
Sbjct: 890 ERDELEAQLRELERKIEELEAQIEKKRKRL 919

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein

 Score = 38.4 bits (89), Expect = 0.004
 Identities = 31/92 (33%), Positives = 55/92 (59%)

Query: 179 HMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 238
           H+    K ++ E  E+  +  + + E+  ++EEEEEE+E  E+E  ++E+E +   E E 
Sbjct: 87  HIRVLAKLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESES 146

Query: 239 EEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEE 270
             E+  ++E E++EE+  EEEE  EE+E  E+
Sbjct: 147 SLEDLSDDETEDDEEKKMEEEEAGEEKESVEQ 178

This family includes proteins related to Mpp10 (M phase phosphoprotein 10). The U3 small nucleolar ribonucleoprotein (snoRNP) is required for three cleavage events that generate the mature 18S rRNA from the pre-rRNA. In Saccharomyces cerevisiae, depletion of Mpp10, a U3 snoRNP-specific protein, halts 18S rRNA production and impairs cleavage at the three U3 snoRNP-dependent sites. Length = 613

>gnl|CDD|178439 PLN02847, PLN02847, triacylglycerol lipase

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 30/111 (27%), Positives = 49/111 (44%)

Query: 144 VKSGQLEIVTGGWVMTDEANSCNVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEE 203
           V + + E +     +T   NS ++     +T  + H       +    ++EEEEE    E
Sbjct: 423 VANSKKEDLPEATHVTSSVNSESLVTEVKTTKSVEHKSESSSSDGSGHDDEEEEEPLLSE 482

Query: 204 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 254
           +       EEE  E E   E E+E + +E E + + +EEE    +E  EEE
Sbjct: 483 DRVITSSVEEEVTEGELWYELEKELQRQETEVDAQAQEEEAAAAKEITEEE 533

Length = 633

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 39/91 (42%), Positives = 60/91 (65%)

Query: 183 FYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 242
             +EE+   E+EE+ +EEE EE   E +EE++ E+  EEE E  EEE  +EE  +E   +
Sbjct: 817 LLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLK 876

Query: 243 EEEEEEEEEEEEGEEEEEEEEEEEEEEEEAL 273
           EEE EE++ ++E E +EE+E+EE++E EE  
Sbjct: 877 EEELEEQKLKDELESKEEKEKEEKKELEEES 907

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 39/87 (44%), Positives = 57/87 (65%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 244
           +E E  EEE+   E+EE+ +EEE EE   E +EE++ E+  EEE E  EEE  +EE  +E
Sbjct: 813 EEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQE 872

Query: 245 EEEEEEEEEEGEEEEEEEEEEEEEEEE 271
              +EEE EE + ++E E +EE+E+EE
Sbjct: 873 LLLKEEELEEQKLKDELESKEEKEKEE 899

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 34/77 (44%), Positives = 48/77 (62%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
           ++E++ EE + EE EE E+ EEEE EEEE EEE E EEE++E  E E + EE +++    
Sbjct: 3   DKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRA 62

Query: 249 EEEEEEGEEEEEEEEEE 265
           + E E   +  E E EE
Sbjct: 63  QAEFENLRKRTEREREE 79

Length = 193

>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 34/76 (44%), Positives = 47/76 (61%)

Query: 186 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 245
           +E++ EE + EE EE E+ EEEE EEEE EEE E EEE++E  E E + EE +++    +
Sbjct: 4   KEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRAQ 63

Query: 246 EEEEEEEEEGEEEEEE 261
            E E   +  E E EE
Sbjct: 64  AEFENLRKRTEREREE 79

Length = 193

>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 34/77 (44%), Positives = 48/77 (62%)

Query: 190 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 249
           ++E++ EE + EE EE E+ EEEE EEEE EEE E EEE++E  E E + EE +++    
Sbjct: 3   DKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRA 62

Query: 250 EEEEEGEEEEEEEEEEE 266
           + E E   +  E E EE
Sbjct: 63  QAEFENLRKRTEREREE 79

Length = 193

>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 35/82 (42%), Positives = 49/82 (59%)

Query: 196 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEG 255
           ++E++ EE + EE EE E+ EEEE EEEE EEE E EEE++E  E E + EE +++    
Sbjct: 3   DKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRA 62

Query: 256 EEEEEEEEEEEEEEEEALWGYA 277
           + E E   +  E E E    YA
Sbjct: 63  QAEFENLRKRTEREREEAKKYA 84

Length = 193

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 8/115 (6%)

Query: 170 NSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEE--------EEEEEEEEEEEEEEE 221
                 V    +P  K EE + E + E  E    ++          +E  +E EEE ++ 
Sbjct: 141 GFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKL 200

Query: 222 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEALWGY 276
             E  E EEE    E   E +EE EE E+E E   EE +E  ++  EE  AL+ Y
Sbjct: 201 GFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEY 255

Length = 646

>gnl|CDD|184899 PRK14906, PRK14906, DNA-directed RNA polymerase subunit beta'/alpha domain fusion protein; Provisional

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 19/85 (22%), Positives = 37/85 (43%)

Query: 189 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 248
           ++E  EE+ ++  +E   + EE + E +   E       +   E++E  ++  ++E    
Sbjct: 142 DKEAREEDADDLRDELAADLEELDAERDRLIEATRRLSVDYVPEDDEFVDDIGDDERLTA 201

Query: 249 EEEEEEGEEEEEEEEEEEEEEEEAL 273
           EE   E  +  EE  E +    EA 
Sbjct: 202 EEVRAEVADIYEEYNERKALRREAF 226

Length = 1460

>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 22/47 (46%), Positives = 29/47 (61%)

Query: 185 KEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 231
           K + E E E  EEEEEE EE EEE EE+  + +  +   EE +E+EE
Sbjct: 140 KPKNEFELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEE 186

This family is a region of the Myb-Related Cdc5p/Cef1 proteins, in fungi, and is part of the pre-mRNA splicing factor complex. Length = 363

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	280
PLN02701	1050	alpha-mannosidase	100.0
KOG1958|consensus	1129		100.0
KOG1959|consensus	996		100.0
PF01074	275	Glyco_hydro_38: Glycosyl hydrolases family 38 N-te	99.96
PRK09819	875	alpha-mannosidase; Provisional	99.91
KOG4342|consensus	1078		99.36
COG0383	943	AMS1 Alpha-mannosidase [Carbohydrate transport and	98.6
COG0383	943	AMS1 Alpha-mannosidase [Carbohydrate transport and	98.24
PF03065	360	Glyco_hydro_57: Glycosyl hydrolase family 57; Inte	93.84
PF12395	111	DUF3658: Protein of unknown function ; InterPro: I	81.62

>PLN02701 alpha-mannosidase

Probab=100.00  E-value=1.7e-49  Score=416.98  Aligned_cols=154  Identities=46%  Similarity=0.817  Sum_probs=146.5

Q ss_pred             ccchhhhhHHHHHHHhcCCCcccccceeeecCCCCCCCCCceEEEEecCccCCcchhccHHHHHHHHHHHHHHHHHHHHH
Q psy11173         31 KESMGKVYEDEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLL  110 (280)
Q Consensus        31 ~~~ml~~y~~~l~f~~~dgg~wkqG~~i~y~~~~~w~~~~~l~VHVVPHSH~D~GWLkT~eEYy~~~v~~ILdsVl~~L~  110 (280)
                      +|||+++| +.|+|+|+|||||||||+|+|+. ++|+ ..+++||||||||||+|||||+++||...+++||++||..|.
T Consensus         2 ~~~~~~~y-~~~~f~~~~gg~w~qg~~~~y~~-~~~~-~~~l~VhlVpHSH~D~gWl~T~~eyy~~~~~~ild~vv~~L~   78 (1050)
T PLN02701          2 DITTKDLY-DRIEFLDKDGGAWKQGWRVKYRG-DEWD-REKLKVFVVPHSHNDPGWILTVEEYYQEQSRHILDTIVESLS   78 (1050)
T ss_pred             ccchhhhh-hcCcccCCCCCeeccccceeecc-cccC-CcceEEEEeCCCCCCHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999 99999999999999999999999 9999 889999999999999999999999999999999999999999


Q ss_pred             hCCCCcEEeechHHHHHHHhccChHHHHHHHHHHHcCCceeeccccccccccccccccCC--------------CCCchh
Q psy11173        111 ENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANSCNVSDN--------------SGSTDV  176 (280)
Q Consensus       111 ~dp~rkFi~aEisff~~Ww~eq~pe~ke~VKkLVknGRLEfVgGGWVM~DEA~thYeS~~--------------~~Sid~  176 (280)
                      +||+|||+|++++||.+||++++|++|++||+||++|||+||||||||||+|++||.|++              +.-+++
T Consensus        79 ~dp~rkFi~~E~~fl~~Ww~~~~pe~~~~vk~LV~~GrLE~vgGgwvm~DEa~~~~esiI~Ql~~G~~~l~~~fG~~P~~  158 (1050)
T PLN02701         79 KDPRRKFIWEEMSYLERWWRDASPSKKEAFTKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGVAPKN  158 (1050)
T ss_pred             hCcCcceeeccHHHHHHHHHhcCHHHHHHHHHHHHcCCEEEECCceecccccccCHHHHHHHHHhhhHHHHhhcCCCCCc
Confidence            999999999999999999999999999999999999999999999999999999999972              222667


Q ss_pred             hhcccccCcch
Q psy11173        177 LTHMMPFYKEE  187 (280)
Q Consensus       177 ~~~~~~f~kee  187 (280)
                      +|+++||||..
T Consensus       159 ~W~iDpFGhs~  169 (1050)
T PLN02701        159 SWAIDPFGYSS  169 (1050)
T ss_pred             CccCCCCCCCH
Confidence            88889999875

>KOG1958|consensus

Probab=100.00  E-value=5.7e-47  Score=388.70  Aligned_cols=156  Identities=48%  Similarity=0.814  Sum_probs=145.3

Q ss_pred             ccccchhhhhHHHHHHHhcCCCcccccceeeecCCCCCCCCCceEEEEecCccCCcchhccHHHHHHHHHHHHHHHHHHH
Q psy11173         29 IGKESMGKVYEDEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTK  108 (280)
Q Consensus        29 ~~~~~ml~~y~~~l~f~~~dgg~wkqG~~i~y~~~~~w~~~~~l~VHVVPHSH~D~GWLkT~eEYy~~~v~~ILdsVl~~  108 (280)
                      ..++||+++| +.++|+|+|||||||||+|+|++ +.|+...+|+|+||||||+||||++||.+||+.++++||++++..
T Consensus       122 ~~d~qml~ly-d~~~f~~~dggvWkqG~~i~yd~-~~~~~~~~LkvfVvPHSHnDPGW~~Tf~~Yy~~~tr~Il~~~v~~  199 (1129)
T KOG1958|consen  122 NTDLQMLDLY-DRMPFLNPDGGVWKQGFKITYDP-KKWDKEPFLKVFVVPHSHNDPGWIKTFEEYYQRQTRHILNNMVNK  199 (1129)
T ss_pred             cchHHHHHHH-HhhhhhCCCcchhhcCceeecCh-hhcccccceEEEEeeccCCCcchhhhHHHHHHHHHHHHHHHHHHH
Confidence            3589999999 99999999999999999999999 999966669999999999999999999999999999999999999


Q ss_pred             HHhCCCCcEEeechHHHHHHHhccChHHHHHHHHHHHcCCceeeccccccccccccccccCC--------------CCCc
Q psy11173        109 LLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANSCNVSDN--------------SGST  174 (280)
Q Consensus       109 L~~dp~rkFi~aEisff~~Ww~eq~pe~ke~VKkLVknGRLEfVgGGWVM~DEA~thYeS~~--------------~~Si  174 (280)
                      |.++|++||||+||+||.+||+.++|++|.+||+||++||||||+|||||||+|++||.+++              +.-+
T Consensus       200 L~e~~~~~FIwaEiS~~~~ww~~~~~~kk~a~k~lv~~GqlEIvtGGWVMpDEAn~Hy~~~i~qliEGh~Wl~~~igv~P  279 (1129)
T KOG1958|consen  200 LSEDPRMKFIWAEISFLERWWDDASPTKKNAVKRLVKNGQLEIVTGGWVMPDEANSHYFAMIDQLIEGHQWLKNNIGVTP  279 (1129)
T ss_pred             hhhCcccchhhhhHHHHHHhhhhcChHHHHHHHHHHhcCcEEEEeCccccCcccchhHHHHHHHHhhhhhHHhccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999972              2335


Q ss_pred             hhhhcccccCcc
Q psy11173        175 DVLTHMMPFYKE  186 (280)
Q Consensus       175 d~~~~~~~f~ke  186 (280)
                      +.-|.++||+++
T Consensus       280 ~s~WaiDPFG~S  291 (1129)
T KOG1958|consen  280 QSGWAIDPFGYS  291 (1129)
T ss_pred             CcccccCCCCCC
Confidence            556667777765

>KOG1959|consensus

Probab=100.00  E-value=2.1e-40  Score=338.99  Aligned_cols=129  Identities=36%  Similarity=0.717  Sum_probs=122.3

Q ss_pred             ecCCCCCCCCCceEEEEecCccCCcchhccHHHHHH--------HHHHHHHHHHHHHHHhCCCCcEEeechHHHHHHHhc
Q psy11173         60 LDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFV--------HSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKT  131 (280)
Q Consensus        60 y~~~~~w~~~~~l~VHVVPHSH~D~GWLkT~eEYy~--------~~v~~ILdsVl~~L~~dp~rkFi~aEisff~~Ww~e  131 (280)
                      |.+|+... ++|+|||||||||+|+|||||+++||+        .-|++|||+||..|.+||+||||++|++||.+||..
T Consensus        26 y~t~~~~~-~~~invHlVPHSHDDVGWLKTVDQyy~G~~n~Iq~AgVqyIldSVV~eLl~dp~RRFI~VE~aFF~rWW~~  104 (996)
T KOG1959|consen   26 YNTCHKVV-PNMINVHLVPHSHDDVGWLKTVDQYYYGSKNKIQHAGVQYILDSVVEELLKDPNRRFIYVETAFFARWWNE  104 (996)
T ss_pred             cCCCcccc-CceeEEEecCCccCccceeeeehhheecCCcccchhhHHHHHHHHHHHHhcCCccceehhhHHHHHHHHHh
Confidence            58999999 889999999999999999999999998        459999999999999999999999999999999999


Q ss_pred             cChHHHHHHHHHHHcCCceeeccccccccccccccccCC--------------C--CCchhhhcccccCcchhh
Q psy11173        132 ISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANSCNVSDN--------------S--GSTDVLTHMMPFYKEEEE  189 (280)
Q Consensus       132 q~pe~ke~VKkLVknGRLEfVgGGWVM~DEA~thYeS~~--------------~--~Sid~~~~~~~f~keeee  189 (280)
                      |++.+|.+||+||++||||||||||||||+|++||.+++              +  +-+++.||++||+|+++-
T Consensus       105 qS~~~k~~Vk~LV~~GrLEFi~Ggw~MnDEA~~hY~dvIDQ~TlGlrfL~~tFG~cgrPrvgWqIDPFGHSreq  178 (996)
T KOG1959|consen  105 QSETQKEQVKKLVNEGRLEFIGGGWSMNDEATTHYQDVIDQFTLGLRFLKDTFGECGRPRVGWQIDPFGHSREQ  178 (996)
T ss_pred             cCHHHHHHHHHHHhcCCEEEecCeeeecchhhhhHHHHHHHHHHHHHHHHHHhcccCCcceeeeeCCCCcchHH
Confidence            999999999999999999999999999999999999974              2  558899999999999873

>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3

Probab=99.96  E-value=1.5e-29  Score=226.26  Aligned_cols=112  Identities=32%  Similarity=0.443  Sum_probs=89.8

Q ss_pred             EEEEecCccCCcchhccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEeechHHHHHHHhccChHHHHHHHHHHHcCCceee
Q psy11173         73 RVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIV  152 (280)
Q Consensus        73 ~VHVVPHSH~D~GWLkT~eEYy~~~v~~ILdsVl~~L~~dp~rkFi~aEisff~~Ww~eq~pe~ke~VKkLVknGRLEfV  152 (280)
                      +||||||||||+||++|+++|. .++.++|++|+..|.++|++||++.++++|.+||.. .|..+.++|+||++|||+||
T Consensus         1 ~v~~i~HsH~D~~W~~t~~~~~-~~~~~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~-~p~~~~~~~~lv~~Gri~~v   78 (275)
T PF01074_consen    1 TVHVIPHSHWDRGWLWTFEEYR-RYLVNILDSVLDLLEEDPDFRFIDGQTAYLEDYLED-APEEFKRIKKLVKEGRIEIV   78 (275)
T ss_dssp             EEEEEEEEB--SSSSS-HHHHH-HHHHHHHHHHHHHHHH-TT--EECTBCHHHHHHHHC-SGHHHHHHHHHHHTTSEEES
T ss_pred             CEEEccccccchhhcccHHHHH-HHHHHHHHHHHHHHHhCCcceEeechhHHHHHHHHh-CCHHHHHHHHHHHhceeEEe
Confidence            6999999999999999999995 678899999999999999999999999999877765 88999999999999999999


Q ss_pred             ccccccccccccccccCC--------------CCCchhhhcccccCcc
Q psy11173        153 TGGWVMTDEANSCNVSDN--------------SGSTDVLTHMMPFYKE  186 (280)
Q Consensus       153 gGGWVM~DEA~thYeS~~--------------~~Sid~~~~~~~f~ke  186 (280)
                      ||||||+|+++++++|++              +..+++++++++|++.
T Consensus        79 gg~~~~~D~~l~~~Eslirql~~G~~~~~~~fg~~~~~~~~~D~FG~~  126 (275)
T PF01074_consen   79 GGWYVQPDENLPSGESLIRQLLYGHKYLRKEFGVRPKVAWQPDSFGHS  126 (275)
T ss_dssp             SSBSS-B-SSSS-HHHHHHHHHHHHHHHHHHHTG--SEEEESSSSSB-
T ss_pred             CceeeeccccCCCHHHHHHHHhhhHHHHHHhcCCCCCeEEeCCCCCCc
Confidence            999999999999999972              3446677777788764

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.; GO: 0004559 alpha-mannosidase activity, 0005975 carbohydrate metabolic process; PDB: 2WYI_A 2WYH_A 1O7D_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....

>PRK09819 alpha-mannosidase; Provisional

Probab=99.91  E-value=6.1e-25  Score=227.24  Aligned_cols=114  Identities=21%  Similarity=0.280  Sum_probs=97.1

Q ss_pred             ceEEEEecCccCCcchhccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEee--chHHHHHHHhccChHHHHHHHHHHHcCC
Q psy11173         71 LLRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWA--EMSYLSLWWKTISEDTKDKVRLLVKSGQ  148 (280)
Q Consensus        71 ~l~VHVVPHSH~D~GWLkT~eEYy~~~v~~ILdsVl~~L~~dp~rkFi~a--Eisff~~Ww~eq~pe~ke~VKkLVknGR  148 (280)
                      +++||||||||||++||||++++.. ++.++|++||..|.++|+++|++.  .+++|..|| .+.|++|.+||+||++||
T Consensus         3 ~~~v~~v~HtH~D~~Wl~~~~~~~~-~~~~~~~~vl~lle~~p~~~f~~~d~q~~~l~~~~-~~~Pe~~~~ik~lV~~Gr   80 (875)
T PRK09819          3 KSKVHIVPHMHWDREWYFTTERSRI-LLVNNMEEILDRLEQDNDYKYYVLDGQTSLLEDYL-AVKPEDKERVKKLVQAGK   80 (875)
T ss_pred             ceEEEEeCCCCCChhhcCChHHhHH-HHHHHHHHHHHHHHhCCCcceEEEchhHHHHHHHH-HhChHHHHHHHHHHHcCC
Confidence            3679999999999999999999975 577899999999999999998753  456666555 789999999999999999


Q ss_pred             ceeeccccccccccccccccCC-------------CCCchhhhcccccCcch
Q psy11173        149 LEIVTGGWVMTDEANSCNVSDN-------------SGSTDVLTHMMPFYKEE  187 (280)
Q Consensus       149 LEfVgGGWVM~DEA~thYeS~~-------------~~Sid~~~~~~~f~kee  187 (280)
                      | ++||||||||+++++++|++             +....++|.+++|++.-
T Consensus        81 l-~~G~W~v~~D~~l~sgEsliRqll~G~~~~~~fG~~~~vgwlpD~FG~s~  131 (875)
T PRK09819         81 L-IIGPWYTQTDQLVVSGESIVRNLLYGIRDCREFGEPMKIGYLPDSFGQSG  131 (875)
T ss_pred             E-eECcEEeecccccCCHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCcH
Confidence            9 66666699999999999984             45566777888888753

>KOG4342|consensus

Probab=99.36  E-value=9.8e-13  Score=134.38  Aligned_cols=110  Identities=19%  Similarity=0.206  Sum_probs=96.9

Q ss_pred             CceEEEEecCccCCcchhccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEeechHHHHHHHhccChHHHHHHHHHHHcCCc
Q psy11173         70 NLLRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQL  149 (280)
Q Consensus        70 ~~l~VHVVPHSH~D~GWLkT~eEYy~~~v~~ILdsVl~~L~~dp~rkFi~aEisff~~Ww~eq~pe~ke~VKkLVknGRL  149 (280)
                      ..-+||.|+|-|+|.+|||+|-+... ++.+-..+.+..|..+|.++|+-+.. .-..|.+...|..+.+++.+|..||+
T Consensus       279 s~~nv~aiGhCHIDTAWLWPFaETrR-KivRSW~tq~~lMdR~PEy~FvcSQA-qQ~~WlkedhP~~f~kl~e~~~q~qF  356 (1078)
T KOG4342|consen  279 SQHNVHAIGHCHIDTAWLWPFAETRR-KIVRSWVTQLQLMDRNPEYIFVCSQA-QQLEWLKEDHPGLFSKLQEFACQGQF  356 (1078)
T ss_pred             cccceeeeccccccchhhcChHHHHH-HHHHHHHHHHhHHhhCcceeEehhhH-HHHHHHhhhChhHHHHHHHHHhcCce
Confidence            35679999999999999999999975 44456778899999999999997654 44459999999999999999999999


Q ss_pred             eeeccccccccccccccccCCCCCchhhhcccccCc
Q psy11173        150 EIVTGGWVMTDEANSCNVSDNSGSTDVLTHMMPFYK  185 (280)
Q Consensus       150 EfVgGGWVM~DEA~thYeS~~~~Sid~~~~~~~f~k  185 (280)
                      -.|||.||.+|.++|+++|+    ++||-.++.||-
T Consensus       357 ~pvGGtWVE~DtNiPsGEsl----vRQFl~GQ~FFl  388 (1078)
T KOG4342|consen  357 VPVGGTWVEMDTNIPSGESL----VRQFLQGQNFFL  388 (1078)
T ss_pred             eeccceEEecCCCCCChHHH----HHHHHhhhhHHH
Confidence            99999999999999999999    789988888763

>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]

Probab=98.60  E-value=1.2e-08  Score=108.29  Aligned_cols=95  Identities=20%  Similarity=0.208  Sum_probs=85.5

Q ss_pred             ceEEEEecCccCCcchhccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEeechHHHHHHHhccChHHHHHHHHHHHcCCce
Q psy11173         71 LLRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLE  150 (280)
Q Consensus        71 ~l~VHVVPHSH~D~GWLkT~eEYy~~~v~~ILdsVl~~L~~dp~rkFi~aEisff~~Ww~eq~pe~ke~VKkLVknGRLE  150 (280)
                      ..+|+.+.|+|.|..|+|++.+... .+...+.+++..|...|.++|+.+-+.++ .|.....|....+  ++|..|+++
T Consensus       197 g~~I~~~ghahid~aWlw~l~et~r-~a~ts~~~~~~l~D~~p~~~~~~s~~~~y-~~l~~d~p~l~~~--~~v~~~~~~  272 (943)
T COG0383         197 GNEIPAVGHAHIDTAWLWPLDETER-KASTSFSLVMNLMDHYPVQKFVQSAAALY-NWLKPDVPFLFSR--PAVEFEQWE  272 (943)
T ss_pred             cccccccchhhHHHHHhccHHHHHH-HHhhhhhheecccccChhhhhhhhHHHHH-HHhcCccHHHhhc--ccccccceE
Confidence            3449999999999999999999874 56678889999999999999999755544 4999999999998  999999999


Q ss_pred             eeccccccccccccccccC
Q psy11173        151 IVTGGWVMTDEANSCNVSD  169 (280)
Q Consensus       151 fVgGGWVM~DEA~thYeS~  169 (280)
                      +++|+||-+|+++++++|.
T Consensus       273 ~~~g~~ve~d~n~~sGEsl  291 (943)
T COG0383         273 IVGGMWVEEDLNTPSGESL  291 (943)
T ss_pred             EeecccccccCCccccchh
Confidence            9999999999999999997

>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]

Probab=98.24  E-value=1.1e-07  Score=101.18  Aligned_cols=97  Identities=23%  Similarity=0.281  Sum_probs=81.4

Q ss_pred             ceEEEEecCccCCcchhccHHHHHHHHHHHHHHHHHHHHHhCCCC-cEEeechHHHHHHHhccChHHHHHHHHHHHcCCc
Q psy11173         71 LLRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKR-KFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQL  149 (280)
Q Consensus        71 ~l~VHVVPHSH~D~GWLkT~eEYy~~~v~~ILdsVl~~L~~dp~r-kFi~aEisff~~Ww~eq~pe~ke~VKkLVknGRL  149 (280)
                      ++.+|+|+|||||++|+++.+.++...+ ..|++++..+.++|.. .|....+......+....|..+++|+.++..|+|
T Consensus         3 ~~~~~ii~~~~wdrew~~~~e~~~~~~~-~~~~~i~~~~~~~~~~~~~~~d~qt~~l~d~l~v~~~~~~~~~~~~~~~~l   81 (943)
T COG0383           3 KKKVHIISHSHWDREWYFTSESHRILLD-ELFEEIIELLQKDPEFAGFHLDGQTIWLDDYLAVPPELKDRVKLLIASGKL   81 (943)
T ss_pred             ccccccchhhhhhhhceeeccceEeech-hhhhhhhhccccCcccceecCccceeeeeeeEEecccchhhHHHHHhhcCc
Confidence            4567999999999999999999886544 4699999999999944 4555555555556777889999999999999999


Q ss_pred             eeeccccccccccccccccC
Q psy11173        150 EIVTGGWVMTDEANSCNVSD  169 (280)
Q Consensus       150 EfVgGGWVM~DEA~thYeS~  169 (280)
                       ++|.++.+.|.+.++..|.
T Consensus        82 -~ig~~~~~~~~~~~~~e~~  100 (943)
T COG0383          82 -GIGPWYTQTDTFILSGESN  100 (943)
T ss_pred             -cccCCCCeeEEEEeccccc
Confidence             7788999999999998884

>PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3

Probab=93.84  E-value=0.11  Score=49.22  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=18.9

Q ss_pred             HHHHHHHHHcCCceeecccccc
Q psy11173        137 KDKVRLLVKSGQLEIVTGGWVM  158 (280)
Q Consensus       137 ke~VKkLVknGRLEfVgGGWVM  158 (280)
                      -..+|+|++.|+++|++++|.-
T Consensus       113 i~~~~~l~~~G~iEll~~~~~h  134 (360)
T PF03065_consen  113 IEAFRELAERGQIELLTSPYYH  134 (360)
T ss_dssp             HHHHHHHHHTTSEEEEEE-TT-
T ss_pred             HHHHHHHHHCCCEEEEeCchHH
Confidence            8899999999999999999954

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 57 GH57 from CAZY comprises enzymes with two known activities; alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1 from EC).; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.

>PF12395 DUF3658: Protein of unknown function ; InterPro: IPR022123 This domain family is found in bacteria, and is approximately 110 amino acids in length

Probab=81.62  E-value=0.95  Score=36.94  Aligned_cols=68  Identities=18%  Similarity=0.223  Sum_probs=44.9

Q ss_pred             EEEecCccCCcchhccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEeechHHHHHHHhccChHHHHHHHHHHHcCCceeec
Q psy11173         74 VFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVT  153 (280)
Q Consensus        74 VHVVPHSH~D~GWLkT~eEYy~~~v~~ILdsVl~~L~~dp~rkFi~aEisff~~Ww~eq~pe~ke~VKkLVknGRLEfVg  153 (280)
                      |+=||=.|.|.--+.....-|. .+.+++-.|+..+.....            .||      ..-+|+.||+.|+|++.|
T Consensus        41 i~sv~ed~yD~~Il~~~~~~~~-~~arvIg~vl~~~~~~i~------------D~f------~~~Ri~~Li~~G~le~~g  101 (111)
T PF12395_consen   41 IVSVPEDYYDDFILEQAPDEFQ-KAARVIGEVLGHSDQGIG------------DWF------LEYRIRELISQGVLEIKG  101 (111)
T ss_pred             EEecChHHhhHHHHhcCCcccc-HHHHHHHHHHHhcCcCCC------------hHH------HHHHHHHHHHCCCEEEec
Confidence            5556777888887776655553 356677777777532211            122      234899999999999988


Q ss_pred             ccccccc
Q psy11173        154 GGWVMTD  160 (280)
Q Consensus       154 GGWVM~D  160 (280)
                      ..-.|.+
T Consensus       102 ~~~~mr~  108 (111)
T PF12395_consen  102 DPKDMRH  108 (111)
T ss_pred             CCCcccc
Confidence            6655543

The family is found in association with PF08874 from PFAM. There are two completely conserved residues (D and R) that may be functionally important.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	280
1ps3_A	1045	Golgi Alpha-mannosidase Ii In Complex With Kifunens		2e-34
3dx3_A	1045	Golgi Alpha-Mannosidase Ii In Complex With Mannosta		2e-34
3cv5_A	1045	Golgi Mannosidase Ii D204a Catalytic Nucleophile Mu		2e-34
1qwn_A	1045	Golgi Alpha-Mannosidase Ii Covalent Intermediate Co		2e-34
1qwu_A	1045	Golgi Alpha-Mannosidase Ii D341n Mutant Complex Wit		2e-34
1hxk_A	1015	Golgi Alpha-Mannosidase Ii In Complex With Deoxyman		2e-33
1hty_A	1015	Golgi Alpha-Mannosidase Ii Length = 1015		4e-33
1o7d_A	298	The Structure Of The Bovine Lysosomal A-Mannosidase		8e-19

>pdb|1PS3|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine Length = 1045

Iteration: 1
 Score =  142 bits (359), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/125 (52%), Positives = 88/125 (70%), Gaps = 1/125 (0%)
Query: 40  DEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTK 99
           D + F +I+GG W QGWNI  D   + +  + L+VFVVPHSHNDPGW QTFE Y+ H TK
Sbjct: 50  DRMSFKDIDGGVWKQGWNIKYD-PLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTK 108
Query: 100 SILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMT 159
            IL   +  L +N + KFIWAE+SY + ++  + E+ K +++ +VK+GQLE VTGGWVM 
Sbjct: 109 HILSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMP 168
Query: 160 DEANS 164
           DEANS
Sbjct: 169 DEANS 173

>pdb|3DX3|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin Analog (1r,2r, 3s,4r,5r)-5-Aminocyclopentane-1,2,3,4-Tetraol Length = 1045

Iteration: 1
 Score =  142 bits (358), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/125 (52%), Positives = 88/125 (70%), Gaps = 1/125 (0%)
Query: 40  DEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTK 99
           D + F +I+GG W QGWNI  D   + +  + L+VFVVPHSHNDPGW QTFE Y+ H TK
Sbjct: 50  DRMSFKDIDGGVWKQGWNIKYD-PLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTK 108
Query: 100 SILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMT 159
            IL   +  L +N + KFIWAE+SY + ++  + E+ K +++ +VK+GQLE VTGGWVM 
Sbjct: 109 HILSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMP 168
Query: 160 DEANS 164
           DEANS
Sbjct: 169 DEANS 173

>pdb|3CV5|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant Complex With 3alpha,6alpha-Mannopentaose Length = 1045

Iteration: 1
 Score =  142 bits (358), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/125 (52%), Positives = 88/125 (70%), Gaps = 1/125 (0%)
Query: 40  DEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTK 99
           D + F +I+GG W QGWNI  D   + +  + L+VFVVPHSHNDPGW QTFE Y+ H TK
Sbjct: 50  DRMSFKDIDGGVWKQGWNIKYD-PLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTK 108
Query: 100 SILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMT 159
            IL   +  L +N + KFIWAE+SY + ++  + E+ K +++ +VK+GQLE VTGGWVM 
Sbjct: 109 HILSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMP 168
Query: 160 DEANS 164
           DEANS
Sbjct: 169 DEANS 173

>pdb|1QWN|A Chain A, Golgi Alpha-Mannosidase Ii Covalent Intermediate Complex With 5- Fluoro-Gulosyl-Fluoride Length = 1045

Iteration: 1
 Score =  142 bits (358), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/125 (52%), Positives = 88/125 (70%), Gaps = 1/125 (0%)
Query: 40  DEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTK 99
           D + F +I+GG W QGWNI  D   + +  + L+VFVVPHSHNDPGW QTFE Y+ H TK
Sbjct: 50  DRMSFKDIDGGVWKQGWNIKYD-PLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTK 108
Query: 100 SILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMT 159
            IL   +  L +N + KFIWAE+SY + ++  + E+ K +++ +VK+GQLE VTGGWVM 
Sbjct: 109 HILSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMP 168
Query: 160 DEANS 164
           DEANS
Sbjct: 169 DEANS 173

>pdb|1QWU|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With 5-F-Guloside Length = 1045

Iteration: 1
 Score =  142 bits (358), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/125 (52%), Positives = 88/125 (70%), Gaps = 1/125 (0%)
Query: 40  DEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTK 99
           D + F +I+GG W QGWNI  D   + +  + L+VFVVPHSHNDPGW QTFE Y+ H TK
Sbjct: 50  DRMSFKDIDGGVWKQGWNIKYD-PLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTK 108
Query: 100 SILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMT 159
            IL   +  L +N + KFIWAE+SY + ++  + E+ K +++ +VK+GQLE VTGGWVM 
Sbjct: 109 HILSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMP 168
Query: 160 DEANS 164
           DEANS
Sbjct: 169 DEANS 173

>pdb|1HXK|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Deoxymannojirimicin Length = 1015

Iteration: 1
 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/125 (52%), Positives = 88/125 (70%), Gaps = 1/125 (0%)
Query: 40  DEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTK 99
           D + F +I+GG W QGWNI  D   + +  + L+VFVVPHSHNDPGW QTFE Y+ H TK
Sbjct: 20  DRMSFKDIDGGVWKQGWNIKYD-PLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTK 78
Query: 100 SILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMT 159
            IL   +  L +N + KFIWAE+SY + ++  + E+ K +++ +VK+GQLE VTGGWVM 
Sbjct: 79  HILSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMP 138
Query: 160 DEANS 164
           DEANS
Sbjct: 139 DEANS 143

>pdb|1HTY|A Chain A, Golgi Alpha-Mannosidase Ii Length = 1015

Iteration: 1
 Score =  138 bits (347), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 65/125 (52%), Positives = 85/125 (68%), Gaps = 1/125 (0%)
Query: 40  DEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTK 99
           D   F +I+GG W QGWNI  D   + +  + L+VFVVPHSHNDPGW QTFE Y+ H TK
Sbjct: 20  DRXSFKDIDGGVWKQGWNIKYD-PLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTK 78
Query: 100 SILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMT 159
            IL   +  L +N + KFIWAE+SY + ++  + E+ K + + +VK+GQLE VTGGWV  
Sbjct: 79  HILSNALRHLHDNPEXKFIWAEISYFARFYHDLGENKKLQXKSIVKNGQLEFVTGGWVXP 138
Query: 160 DEANS 164
           DEANS
Sbjct: 139 DEANS 143

>pdb|1O7D|A Chain A, The Structure Of The Bovine Lysosomal A-Mannosidase Suggests A Novel Mechanism For Low Ph Activation Length = 298

Iteration: 1
 Score = 90.5 bits (223), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 64/103 (62%), Gaps = 8/103 (7%)
Query: 70  NLLRVFVVPHSHNDPGWKQTFESYFV--------HSTKSILDTMVTKLLENEKRKFIWAE 121
           ++L V +VPH+H+D GW +T + YF            + ILD++++ LL N  R+FI+ E
Sbjct: 12  DMLNVHLVPHTHDDVGWLKTVDQYFYGIYNNIQPAGVQYILDSVISSLLANPTRRFIYVE 71
Query: 122 MSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANS 164
           +++ S WW+  +  T+  VR LV+ G+LE   GGWVM DEA +
Sbjct: 72  IAFFSRWWRQQTNATQKIVRELVRQGRLEFANGGWVMNDEATT 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	280
3bvx_A	1045	Alpha-mannosidase 2; family 38 glycoysl hydrolase,	100.0
1o7d_A	298	Lysosomal alpha-mannosidase; hydrolase, glycosyl h	100.0
2wyh_A	923	Alpha-mannosidase; hydrolase, glycosidase, glycosi	99.95
3lvt_A	899	Glycosyl hydrolase, family 38; PSI, MCSG, structur	99.94
1k1x_A	659	4-alpha-glucanotransferase; 2.40A {Thermococcus li	98.83
2b5d_X	528	Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2.	84.3

>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ...

Probab=100.00  E-value=1.2e-40  Score=347.09  Aligned_cols=156  Identities=45%  Similarity=0.796  Sum_probs=144.1

Q ss_pred             cccchhhhhHHHHHHHhcCCCcccccceeeecCCCCCCCCCceEEEEecCccCCcchhccHHHHHHHHHHHHHHHHHHHH
Q psy11173         30 GKESMGKVYEDEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKL  109 (280)
Q Consensus        30 ~~~~ml~~y~~~l~f~~~dgg~wkqG~~i~y~~~~~w~~~~~l~VHVVPHSH~D~GWLkT~eEYy~~~v~~ILdsVl~~L  109 (280)
                      .++||+++| +.|+|+|++||+|+|||+|.|.. +.|+...+++||||||||+|+|||||+++||...+++||++||..|
T Consensus        41 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~V~lV~HsH~D~gWl~t~~e~~~~~~~~~~~~vl~~L  118 (1045)
T 3bvx_A           41 VDVQMLELY-DRMSFKDIDGGVWKQGWNIKYDP-LKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHL  118 (1045)
T ss_dssp             CSEEHHHHH-HHCCCCCCCCSSSTTSCCCCCCG-GGSBTTBCEEEEEEEEEECCSSSSSCHHHHHHHTHHHHHHHHHHHH
T ss_pred             CCeeHHHHH-hcCCccCCCCccccccchhhhhc-cccCCCCceEEEEEecCCCCccccchHHHhhhHHHHHHHHHHHHHH
Confidence            589999999 99999999999999999999998 8899666999999999999999999999999878999999999999


Q ss_pred             HhCCCCcEEeechHHHHHHHhccChHHHHHHHHHHHcCCceeeccccccccccccccccCC--------------CCCch
Q psy11173        110 LENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANSCNVSDN--------------SGSTD  175 (280)
Q Consensus       110 ~~dp~rkFi~aEisff~~Ww~eq~pe~ke~VKkLVknGRLEfVgGGWVM~DEA~thYeS~~--------------~~Sid  175 (280)
                      .++|+|||+|++++||.+||+.++|+++++||+||++|||+||||||||||+|++||+|++              +..++
T Consensus       119 ~~~p~~~F~~~e~~~l~~w~~e~~Pe~~~~vk~lV~~Grle~~gG~Wv~~De~~~~~EslirQl~~G~~~~~~~FG~~~~  198 (1045)
T 3bvx_A          119 HDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPT  198 (1045)
T ss_dssp             HHCTTCCEEECCHHHHHHHHHHSCHHHHHHHHHHHHTTSEEESSCCSSCBCSSSCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             HHCCCcEEEEecHHHHHHHHHHCCHHHHHHHHHHHhCCCEEEECCccccccccCCCHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999972              33355


Q ss_pred             hhhcccccCcch
Q psy11173        176 VLTHMMPFYKEE  187 (280)
Q Consensus       176 ~~~~~~~f~kee  187 (280)
                      ++|+++||++.-
T Consensus       199 ~~W~pD~FG~s~  210 (1045)
T 3bvx_A          199 ASWAIAPFGHSP  210 (1045)
T ss_dssp             EEEECCSSSBCT
T ss_pred             eEEcCCCCCccH
Confidence            666677777653

>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1

Probab=100.00  E-value=1.3e-35  Score=273.58  Aligned_cols=127  Identities=35%  Similarity=0.712  Sum_probs=114.6

Q ss_pred             ecCCCCCCCCCceEEEEecCccCCcchhccHHHHHHH--------HHHHHHHHHHHHHHhCCCCcEEeechHHHHHHHhc
Q psy11173         60 LDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVH--------STKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKT  131 (280)
Q Consensus        60 y~~~~~w~~~~~l~VHVVPHSH~D~GWLkT~eEYy~~--------~v~~ILdsVl~~L~~dp~rkFi~aEisff~~Ww~e  131 (280)
                      |.+|+.|+ +.+++||||||||+|+|||+|+++||.+        .+++||++||..|.++|++||++++++||.+||+.
T Consensus         3 ~~~~~~~~-~~~~~v~~v~HsH~D~gWl~t~~e~~~~~~~~i~~~~~~~~~~~vl~~l~~~p~~~F~~~e~~~~~~w~~~   81 (298)
T 1o7d_A            3 YKTCPKVK-PDMLNVHLVPHTHDDVGWLKTVDQYFYGIYNNIQPAGVQYILDSVISSLLANPTRRFIYVEIAFFSRWWRQ   81 (298)
T ss_dssp             CTTCCCCC-SSSEEEEEEEBCBCCSSSSSCHHHHHHTCCTTTCCCCHHHHHHHHHHHHHHCTTCCEEECCHHHHHHHHHT
T ss_pred             CcCCCCCC-CCceEEEEeCCCCCcccccccHHHhhccccchhHHHHHHHHHHHHHHHHHHCCCCeEEEecchHhHHHHHh
Confidence            48999999 8899999999999999999999999963        58899999999999999999999999999999999


Q ss_pred             cChHHHHHHHHHHHcCCceeeccccccccccccccccCC--------------CCC--chhhhcccccCcch
Q psy11173        132 ISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANSCNVSDN--------------SGS--TDVLTHMMPFYKEE  187 (280)
Q Consensus       132 q~pe~ke~VKkLVknGRLEfVgGGWVM~DEA~thYeS~~--------------~~S--id~~~~~~~f~kee  187 (280)
                      ++|+.+++||+||++|||+||||||||||+|+++|+|++              +..  ++.+|++++|++..
T Consensus        82 ~~Pe~~~~vk~lV~~Grle~vgG~wve~D~~~~~~eslirQl~~G~~~~~~~fG~~~~~~~~W~pD~FG~s~  153 (298)
T 1o7d_A           82 QTNATQKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQMTLGLRFLEETFGSDGRPRVAWHIDPFGHSR  153 (298)
T ss_dssp             SCHHHHHHHHHHHHTTSEEESSCSSSCBCSSSCCHHHHHHHHHHHHHHHHHHHGGGGCCSEEEESSSSSCCH
T ss_pred             cCHHHHHHHHHHHHCCCEEEECceeeccccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCceeEeCCCCCccH
Confidence            999999999999999999999999999999999999972              222  55666677776653

>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A*

Probab=99.95  E-value=5.8e-29  Score=255.57  Aligned_cols=124  Identities=15%  Similarity=0.210  Sum_probs=106.3

Q ss_pred             ecCCCCCCCCCceEEEEecCccCCcchhccHHHHHHHHHHHHHHHHHHHHHhCCCCc-EEeechHHHHHHHhccChHHHH
Q psy11173         60 LDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRK-FIWAEMSYLSLWWKTISEDTKD  138 (280)
Q Consensus        60 y~~~~~w~~~~~l~VHVVPHSH~D~GWLkT~eEYy~~~v~~ILdsVl~~L~~dp~rk-Fi~aEisff~~Ww~eq~pe~ke  138 (280)
                      |..|+.-+ ..+++||||||||+|+|||||+++|+. ++++||++||..|.++|+++ |+|++++++.+||..++|++++
T Consensus        15 ~~~~~~~~-~~~~~v~~v~HsH~D~~Wl~t~~~~~~-~~~~~~~~vl~~l~~~p~~~~F~~~~q~~~~~~~~~~~p~~~~   92 (923)
T 2wyh_A           15 EVLFQGPA-MATKKVHIISHSHWDREWYMAYEQHHM-RLINLIDDLLEVFQTDPDFHSFHLDGQTIILDDYLKVRPEREP   92 (923)
T ss_dssp             HHHSCCCC-CCCEEEEEEEBCBCCSSSSSCHHHHHH-HHHHHHHHHHHHHHHCTTCCCEECTTBTHHHHHHHHHCGGGHH
T ss_pred             hhccCCCC-CCceEEEEEccCCCCcccccHHHHHHH-HHHHHHHHHHHHHHhCCCCceEEEeCCHHHHHHHHHHCHHHHH
Confidence            46667777 678999999999999999999999984 68899999999999999998 9998887777899999999999


Q ss_pred             HHHHHHHcCCceeeccccccccccccccccCC-------------CCCchhhhcccccCcc
Q psy11173        139 KVRLLVKSGQLEIVTGGWVMTDEANSCNVSDN-------------SGSTDVLTHMMPFYKE  186 (280)
Q Consensus       139 ~VKkLVknGRLEfVgGGWVM~DEA~thYeS~~-------------~~Sid~~~~~~~f~ke  186 (280)
                      +||+||++|||+| ||||||||+|++||+|++             +..++++|+++||++.
T Consensus        93 ~vk~lV~~Grlei-G~wYv~~D~~~~~~es~irq~~~G~~~~~~fG~~~~~~w~pD~FG~s  152 (923)
T 2wyh_A           93 EIRQAIASGKLRI-GPFYILQDDFLTSSESNVRNMLIGKEDCDRWGASVPLGYFPDTFGNM  152 (923)
T ss_dssp             HHHHHHHTTSEEC-CSBSSCBCSTTSCHHHHHHHHHHHHHHHHHHTCCCSSEEESSCSSBC
T ss_pred             HHHHHHHcCCEEE-eeeeeccccccCCHHHHHHHHHHHHHHHHHcCCCCceeEecCCCCcc
Confidence            9999999999997 544499999999999982             2334566666666664

>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.55A {Enterococcus faecalis}

Probab=99.94  E-value=4.6e-28  Score=249.25  Aligned_cols=114  Identities=15%  Similarity=0.239  Sum_probs=95.1

Q ss_pred             ceEEEEecCccCCcchhccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEeec-hHHHHHHHhccChHHHHHHHHHHHcCCc
Q psy11173         71 LLRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAE-MSYLSLWWKTISEDTKDKVRLLVKSGQL  149 (280)
Q Consensus        71 ~l~VHVVPHSH~D~GWLkT~eEYy~~~v~~ILdsVl~~L~~dp~rkFi~aE-isff~~Ww~eq~pe~ke~VKkLVknGRL  149 (280)
                      +.+||||||||||+|||||+++|+. ++.++|++||..|.++|+|+|++++ +.+|.+||..++|+.+.+||+||++|||
T Consensus         6 ~~~v~~v~HsH~D~~Wl~t~~e~~~-~~~~~~~~~l~~l~~~p~~~f~~~~~q~~~~~~~~~~~p~~~~~vk~lv~~Gr~   84 (899)
T 3lvt_A            6 KKKVYIVSHSHWDREWYLPYEEHHM-RLIELVDNVLDLIENDPEFNSFHLDGQTIILDDYLQVRPEKKEAVKKAVQAGKL   84 (899)
T ss_dssp             CEEEEEEEEECC----CCCHHHHHH-HHHHHHHHHHHHHHHCTTCCCEECTTBTHHHHHHHHHCGGGHHHHHHHHHTTSE
T ss_pred             cceEEEECCCCCChHhcCcHHHHHH-HHHHHHHHHHHHHHhCCCceEEEEcccHHHHHHHHhhCHHHHHHHHHHHHcCCE
Confidence            4689999999999999999999985 6888999999999999999999975 5678889999999999999999999999


Q ss_pred             eeeccccccccccccccccCC-------------CCCchhhhcccccCcc
Q psy11173        150 EIVTGGWVMTDEANSCNVSDN-------------SGSTDVLTHMMPFYKE  186 (280)
Q Consensus       150 EfVgGGWVM~DEA~thYeS~~-------------~~Sid~~~~~~~f~ke  186 (280)
                      + |||||||||++++||+|++             +..++++|++++|++.
T Consensus        85 e-igg~~v~~D~~~~~~es~irq~~~G~~~~~~fG~~~~~~w~~D~FG~s  133 (899)
T 3lvt_A           85 K-IGPFYILQDDFLISSESNVRNMLIGHLESQKWGAPVQLGYFPDTFGNM  133 (899)
T ss_dssp             E-CCSBSSCCCGGGSCHHHHHHHHHHHHHHHHHHTCCCCCEEESCCCT--
T ss_pred             E-ECchhccccccCCCHHHHHHHHHHHHHHHHHcCCCCceeEeCCCCCCc
Confidence            9 7999999999999999972             2335555666666654

>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP: a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A*

Probab=98.83  E-value=3.7e-09  Score=106.63  Aligned_cols=95  Identities=24%  Similarity=0.196  Sum_probs=79.9

Q ss_pred             ceEEEEecCccCCcch-hccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEeechHHHHHHHhccChHHHHHHHHHHHcCCc
Q psy11173         71 LLRVFVVPHSHNDPGW-KQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQL  149 (280)
Q Consensus        71 ~l~VHVVPHSH~D~GW-LkT~eEYy~~~v~~ILdsVl~~L~~dp~rkFi~aEisff~~Ww~eq~pe~ke~VKkLVknGRL  149 (280)
                      ++.|.+|.|+|.+++| .+.+.+    .+...+..++..|.+.|++||...=...+..|+....|....+||+|++.||+
T Consensus         3 ~~~l~lv~H~HqP~~~~~~~~e~----a~~~~Y~pll~ll~~~~~~k~~~~~s~~ll~~l~~~~p~l~~~ik~l~~~G~v   78 (659)
T 1k1x_A            3 RINFIFGIHNHQPLGNFGWVFEE----AYNRSYRPFMEILEEFPEMKVNVHFSGPLLEWIEENKPDYLDLLRSLIKRGQL   78 (659)
T ss_dssp             CEEEEEEEEECCCTTCCHHHHHH----HHHHTHHHHHHHHTTCTTCCEEEEECHHHHHHHHHHCHHHHHHHHHHHHTTCE
T ss_pred             ceEEEEEEEccCCCccCcHHHHH----HHHHHHHHHHHHHHhCCCcEEEEEccHHHHHHHHHHCHHHHHHHHHHHHCCCE
Confidence            3679999999999994 444432    35567888999999999999985556677778899999999999999999999


Q ss_pred             eeeccccccccccccccccC
Q psy11173        150 EIVTGGWVMTDEANSCNVSD  169 (280)
Q Consensus       150 EfVgGGWVM~DEA~thYeS~  169 (280)
                      +|+||+|+.|+.+++...+.
T Consensus        79 E~l~~~~~Hpi~~l~p~e~~   98 (659)
T 1k1x_A           79 EIVVAGFYEPVLAAIPKEDR   98 (659)
T ss_dssp             EEEBCCTTCCCGGGSCHHHH
T ss_pred             EEEccCcccccccCCCHHHH
Confidence            99999999999988776554

>2b5d_X Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2.20A {Thermotoga maritima} SCOP: a.8.3.3 c.6.2.4

Probab=84.30  E-value=3.3  Score=40.83  Aligned_cols=22  Identities=27%  Similarity=0.312  Sum_probs=18.9

Q ss_pred             HHHHHHHHHcCCceeecccccc
Q psy11173        137 KDKVRLLVKSGQLEIVTGGWVM  158 (280)
Q Consensus       137 ke~VKkLVknGRLEfVgGGWVM  158 (280)
                      -.++|+|++.|++||++++++-
T Consensus       125 i~~~r~L~~~G~vEll~~~y~H  146 (528)
T 2b5d_X          125 LEGFKKYQETGKLEIVTCNATH  146 (528)
T ss_dssp             HHHHHHHHHHTSEEEEEECTTC
T ss_pred             HHHHHHHHHCCCEEEEcCchhh
Confidence            3678999999999999998853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	280
d3bvua3	381	c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fru	3e-40
g1o7d.3	330	c.6.2.1 (A:51-342,B:347-384) Lysosomal alpha-manno	6e-29
d1k1xa3	310	c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-te	3e-11
d2es4d1	280	a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)	0.002
d1qvra2	387	c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus	0.003

>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 381

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: alpha-mannosidase
domain: Golgi alpha-mannosidase II
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  141 bits (356), Expect = 3e-40
 Identities = 68/133 (51%), Positives = 92/133 (69%), Gaps = 2/133 (1%)

Query: 33  SMGKVYEDEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFES 92
            M ++Y D + F +I+GG W QGWNI  D   + +  + L+VFVVPHSHNDPGW QTFE 
Sbjct: 14  QMLELY-DRMSFKDIDGGVWKQGWNIKYD-PLKYNAHHKLKVFVVPHSHNDPGWIQTFEE 71

Query: 93  YFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIV 152
           Y+ H TK IL   +  L +N + KFIWAE+SY + ++  + E+ K +++ +VK+GQLE V
Sbjct: 72  YYQHDTKHILSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFV 131

Query: 153 TGGWVMTDEANSC 165
           TGGWVM DEANS 
Sbjct: 132 TGGWVMPDEANSH 144

>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 310

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: 4-alpha-glucanotransferase, N-terminal domain
domain: 4-alpha-glucanotransferase, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 60.1 bits (145), Expect = 3e-11
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 72  LRVFVVPHSHNDPG-WKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWK 130
           +      H+H   G +   FE  +  S +  ++ +     E  + K        L  W +
Sbjct: 4   INFIFGIHNHQPLGNFGWVFEEAYNRSYRPFMEIL----EEFPEMKVNVHFSGPLLEWIE 59

Query: 131 TISEDTKDKVRLLVKSGQLEIVTGGWVMTDEA 162
               D  D +R L+K GQLEIV  G+     A
Sbjct: 60  ENKPDYLDLLRSLIKRGQLEIVVAGFYEPVLA 91

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Length = 387

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 24/117 (20%), Positives = 38/117 (32%)

Query: 156 WVMTDEANSCNVSDNSGSTDVLTHMMPFYKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 215
             +  E  +     +  S + L  +     +  EE  +   E E E E   +  E +   
Sbjct: 263 LQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRL 322

Query: 216 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEEEEEEA 272
           +E   E E  E + +     E    E  + E E E   E          E  EE+ A
Sbjct: 323 DEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIA 379

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	280
d3bvua3	381	Golgi alpha-mannosidase II {Fruit fly (Drosophila	100.0
g1o7d.3	330	Lysosomal alpha-mannosidase {Cow (Bos taurus) [Tax	100.0
d1k1xa3	310	4-alpha-glucanotransferase, N-terminal domain {Arc	99.62
d2b5dx2	404	Alpha-amylase AmyC {Thermotoga maritima [TaxId: 23	93.7
d1ufaa2	412	Hypothetical protein TT1467, N-terminal domain {Th	92.23

>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: alpha-mannosidase
domain: Golgi alpha-mannosidase II
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=6.8e-49  Score=371.22  Aligned_cols=158  Identities=44%  Similarity=0.774  Sum_probs=149.0

Q ss_pred             cccccchhhhhHHHHHHHhcCCCcccccceeeecCCCCCCCCCceEEEEecCccCCcchhccHHHHHHHHHHHHHHHHHH
Q psy11173         28 CIGKESMGKVYEDEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVT  107 (280)
Q Consensus        28 ~~~~~~ml~~y~~~l~f~~~dgg~wkqG~~i~y~~~~~w~~~~~l~VHVVPHSH~D~GWLkT~eEYy~~~v~~ILdsVl~  107 (280)
                      +..+|||++|| +.++|+|+|||+|||||+|+|.+ ++|+.+++|+||||||||+|+|||+|+++||...+++||++||.
T Consensus         9 ~~~~~~~~~~~-~~~~f~~~~~~~~~q~~~~~~~~-~~~~~~~kl~VhlV~HsH~D~gWl~t~~e~~~~~~~~il~~~l~   86 (381)
T d3bvua3           9 PNVDVQMLELY-DRMSFKDIDGGVWKQGWNIKYDP-LKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALR   86 (381)
T ss_dssp             CCCSEEHHHHH-HHCCCCCCCCSSSTTSCCCCCCG-GGCBTTBCEEEEEEEEEECCSSSSSCHHHHHHHTHHHHHHHHHH
T ss_pred             CccceehHHHH-hhccccCCCCCcccCCcceeech-hhcCcCCCcEEEEeCCCCCChhhcCcHHHHHHHHHHHHHHHHHH
Confidence            45689999999 99999999999999999999999 88997899999999999999999999999998889999999999


Q ss_pred             HHHhCCCCcEEeechHHHHHHHhccChHHHHHHHHHHHcCCceeeccccccccccccccccCC--------------CCC
Q psy11173        108 KLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANSCNVSDN--------------SGS  173 (280)
Q Consensus       108 ~L~~dp~rkFi~aEisff~~Ww~eq~pe~ke~VKkLVknGRLEfVgGGWVM~DEA~thYeS~~--------------~~S  173 (280)
                      +|.++|.+||+|++++||.+||..++|+++.+||+||++|||+||||||||||+|++||.|++              +..
T Consensus        87 ~l~~~p~~~F~~~~~~~~~~w~~~~~pe~~~~vk~lV~~GrlEivgg~wv~~De~~~~~es~Irql~~G~~~l~~~fG~~  166 (381)
T d3bvua3          87 HLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVT  166 (381)
T ss_dssp             HHHHCTTCCEEECCHHHHHHHHTTSCHHHHHHHHHHHHTTSEEESSCCSSCBCSSSCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHCCCCEEEEechHHHHHHHHHcCHHHHHHHHHHHHCCCEEEeCCeeecccccCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999999999999999999999972              445


Q ss_pred             chhhhcccccCcch
Q psy11173        174 TDVLTHMMPFYKEE  187 (280)
Q Consensus       174 id~~~~~~~f~kee  187 (280)
                      ++++|+++||+|.-
T Consensus       167 p~~~w~~D~FGhs~  180 (381)
T d3bvua3         167 PTASWAIAPFGHSP  180 (381)
T ss_dssp             CCEEEECSSSSBCT
T ss_pred             CceEEeeCCCCccH
Confidence            77888888888863

>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: 4-alpha-glucanotransferase, N-terminal domain
domain: 4-alpha-glucanotransferase, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.62  E-value=1.9e-16  Score=140.71  Aligned_cols=96  Identities=24%  Similarity=0.234  Sum_probs=86.4

Q ss_pred             CceEEEEecCccCCcc-hhccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEeechHHHHHHHhccChHHHHHHHHHHHcCC
Q psy11173         70 NLLRVFVVPHSHNDPG-WKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQ  148 (280)
Q Consensus        70 ~~l~VHVVPHSH~D~G-WLkT~eEYy~~~v~~ILdsVl~~L~~dp~rkFi~aEisff~~Ww~eq~pe~ke~VKkLVknGR  148 (280)
                      .+++|++|+|+|.++| |.+++.+++    ...+..++..|.++|++||++.-..+|..||...+|+...+||+||++||
T Consensus         2 ~k~~~~~v~H~H~p~g~~~~~~~~~~----~~~y~p~l~~l~~~~~~~~~~~~s~~ll~~~~~~~p~~~~~~~~l~~~G~   77 (310)
T d1k1xa3           2 ERINFIFGIHNHQPLGNFGWVFEEAY----NRSYRPFMEILEEFPEMKVNVHFSGPLLEWIEENKPDYLDLLRSLIKRGQ   77 (310)
T ss_dssp             CCEEEEEEEEECCCTTCCHHHHHHHH----HHTHHHHHHHHTTCTTCCEEEEECHHHHHHHHHHCHHHHHHHHHHHHTTC
T ss_pred             ceEEEEEEEeCCCCCCCChHHHHHHH----HHHHHHHHHHHHhCCCCeEEEEccHHHHHHHHHHCHHHHHHHHHHHHcCC
Confidence            4689999999999999 777777655    33566788999999999999998888999999999999999999999999


Q ss_pred             ceeeccccccccccccccccC
Q psy11173        149 LEIVTGGWVMTDEANSCNVSD  169 (280)
Q Consensus       149 LEfVgGGWVM~DEA~thYeS~  169 (280)
                      |+|+||||++++.++++..+.
T Consensus        78 iE~~~~~~~h~~~~l~~~~~~   98 (310)
T d1k1xa3          78 LEIVVAGFYEPVLAAIPKEDR   98 (310)
T ss_dssp             EEEEBCCTTCCCGGGSCHHHH
T ss_pred             cEEecCcccccchhhccHHHH
Confidence            999999999999999998776

>d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: AmyC N-terminal domain-like
domain: Alpha-amylase AmyC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.70  E-value=0.097  Score=47.41  Aligned_cols=26  Identities=23%  Similarity=0.281  Sum_probs=21.6

Q ss_pred             ChHHHHHHHHHHHcCCceeecccccc
Q psy11173        133 SEDTKDKVRLLVKSGQLEIVTGGWVM  158 (280)
Q Consensus       133 ~pe~ke~VKkLVknGRLEfVgGGWVM  158 (280)
                      .++.-.++|+|++.||+||++++|.-
T Consensus       121 ~~~vi~~~r~L~~~G~vEll~~~y~H  146 (404)
T d2b5dx2         121 DGNILEGFKKYQETGKLEIVTCNATH  146 (404)
T ss_dssp             TTCTHHHHHHHHHHTSEEEEEECTTC
T ss_pred             chHHHHHHHHHHHcCCeeEEeccchh
Confidence            44556788999999999999998854

>d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: AmyC N-terminal domain-like
domain: Hypothetical protein TT1467, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.23  E-value=0.17  Score=46.10  Aligned_cols=30  Identities=23%  Similarity=0.338  Sum_probs=25.0

Q ss_pred             HhccChHHHHHHHHHHHcCCceeecccccc
Q psy11173        129 WKTISEDTKDKVRLLVKSGQLEIVTGGWVM  158 (280)
Q Consensus       129 w~eq~pe~ke~VKkLVknGRLEfVgGGWVM  158 (280)
                      +....+..-.++|+|+++||+||++++|.-
T Consensus       117 ~~~~~~~~i~~~r~L~~~G~vEl~~~~y~H  146 (412)
T d1ufaa2         117 FQRLSGDLVAAFRKAEEGGQVELITSNATH  146 (412)
T ss_dssp             HHHTTTCHHHHHHHHHHHTSEEEEEECTTC
T ss_pred             HHHhhhhHHHHHHHHHHcCCeEEEeccchh
Confidence            345567778899999999999999999854