Psyllid ID: psy11273

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730
MSTNTTQGSHSPDRWYFTKEQLENTPSRKCGYDAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQLEQLTEEFLAIFDKCPSKLKKRICSISSNQNSTLMAAFDGDSKKMSGLGNATFAPPHSTSGRVTDDKRRSEHNGPPPEYRKLMAGGRDMNSRSSTSSTAVPINSMPSANTNKPPAHVFQTSSSSRVPPPPPPHHHHSSAHVPKIKTEHPPMKVEPVMKEALLKQPPLIKQEPNVKQEPYIKSEPHSLLPLRKHEPINPRMMMNKPQSKPVIPHEVRKNGHDLPVPKPHPPPPPPPPPYMSAAKLPPPSHSDVITNVIKEVTYSKQMEKSSILNHKESSISHPPHLSMSIPQTKAPSIFSPEKNTSPVINKTPFKMKTPTPPSFSPIKISPSKSSEGLKAKLEPELVPVITKLGDDILTKPKILASEIISETKQEPHESHSQHPKKKKKHKEKDKDRDKKHKEKKKHKDDKHKDKRKDKHRESSHVDPAPIKITIPKDKIIEMPCSSNLKKIKMKDSFENPLKIRISKDFLSKDSKKRERDTDDSDYPSSKRMAS
ccccccccccccccccccHHHHHHccHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccHHcccccccccccccccccccccccccccccccccccccccHHHcccHHHHHcHHHccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccEEEEEcccccccHHHHcccccccccccccccccc
ccccccccccccccEEEcHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHcccHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHHHHHccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHcccHHHHHHHHcHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccHccHHHHHHHHHHHHHHccccEEEccccccccccEEccccccccccccccccccccccccccEEccccccccccccccccccHHHHHcccHHHHcccccccccHHccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccHHHHccccccccccccEEEEccccccEEEEEccccccccccccccccccccccccHccc
mstnttqgshspdrwyftkeqlentpsrkcgydaeKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQLclfknqppldprseaYQEQAQEIVVNENVLLQTLgfdvgiehphtyVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLAckwanweipqsnegrkwFWYIDKEVTQEQLEQLTEEFLAIFDKCPSKLKKRICSIssnqnstlmaafdgdskkmsglgnatfapphstsgrvtddkrrsehngpppeyrklmaggrdmnsrsstsstavpinsmpsantnkppahvfqtssssrvpppppphhhhssahvpkiktehppmkvepvmkeallkqpplikqepnvkqepyiksephsllplrkhepinprmmmnkpqskpviphevrknghdlpvpkphpppppppppymsaaklpppshsdvITNVIKEVTYSKQMEkssilnhkessishpphlsmsipqtkapsifspekntspvinktpfkmktptppsfspikispsksseglkaklepelVPVITKLgddiltkpkILASEIIsetkqepheshsqhpkkkkkhkekdkdRDKKHkekkkhkddkhkdkrkdkhresshvdpapikitipkdkiiempcssnlkkikmkdsfenplkiriskdflskdskkrerdtddsdypsskrmas
mstnttqgshspdrwyftkeQLENTPSRKCGYDAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQLEQLTEEFLAIFDKCPSKLKKRICSISSNQNSTLMAAFDGDSKKMSGLgnatfapphstsgrvtddkrrsehngpppeyrklmaggrdMNSRSSTSSTAVPINSMPSANTNKPPAHVFQTSSSSRVPPPPPPHHHHSSAHVPKIKTEHPPMKVEPVMKEALLkqpplikqepnvkqepyiksephsllpLRKHEPINPRMMMNKPQSKPVIPHEVRKNGHDLPVPKPHPPPPPPPPPYMSAAKLPPPSHSDVITNVIKEVTYSKQMEKSSILNHKESSISHPPHLSMSIPQTKAPSIFSPEKNTSPVINKTPFKMKTPTPPSFSPIKISPSKSSEGLKAKLEPELVPVItklgddiltkPKILASEIIsetkqepheshsqhpkkkkkhkekdkdrdkkhkekkkhkddkhkdkrkdkhresshvdpapikitipkdkiiempcssnlkkikmkdsfenplkiriskdflskdskkrerdtddsdypsskrmas
MSTNTTQGSHSPDRWYFTKEQLENTPSRKCGYDAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVtqeqleqlteeFLAIFDKCPSKLKKRICSISSNQNSTLMAAFDGDSKKMSGLGNATFAPPHSTSGRVTDDKRRSEHNGPPPEYRKLMAGGRDMNSRSSTSSTAVPINSMPSANTNKPPAHVFQTssssrvpppppphhhhssahvpKIKTEHPPMKVEPVMKEALLKQPPLIKQEPNVKQEPYIKSEPHSLLPLRKHEPINPRMMMNKPQSKPVIPHEVRKNGHDLpvpkphpppppppppymsaaklpppSHSDVITNVIKEVTYSKQMEKSSILNHKESSISHPPHLSMSIPQTKAPSIFSPEKNTSPVINktpfkmktptppsfspikispskssEGLKAKLEPELVPVITKLGDDILTKPKILASEIISETKQEPHESHSQHPkkkkkhkekdkdrdkkhkekkkhkddkhkdkrkdkhreSSHVDpapikitipkdkiiEMPCSSNLKKIKMKDSFENPLKIRISKDFLSKDSKKRERDTDDSDYPSSKRMAS
***************YF*********************SCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQLCLFKN**************AQEIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQLEQLTEEFLAIFDKCPSKLKKRICSI************************************************************************************************************************************************************************************************************************************NVI***************************************************************************************LVPVITKLGDDILTKPKILA*********************************************************************I****II******************************************************
****T**GSHSPDRWYFTKEQLEN********DAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQLEQLTEEFLAIFDKC********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************ITIPKDKIIE*************DSFENPLKI*******************************
***********PDRWYFTKEQLENTPSRKCGYDAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQLEQLTEEFLAIFDKCPSKLKKRICSISSNQNSTLMAAFDGDSKKMSGLGNATFAPP******************PPPEYRKLMAG**************VPINSMPSANTNKP*****************************KIKTEHPPMKVEPVMKEALLKQPPLIKQEPNVKQEPYIKSEPHSLLPLRKHEPINPRMMMNKPQSKPVIPHEVRKNGHDLPVPKPHPPPPPPPPPYMSAAKLPPPSHSDVITNVIKEVTYSKQMEKSSILNHKESSISHPPHLSMSIPQTKAPSIFSPEKNTSPVINKTPFKMKTPTPPSFSPIKISPSKSSEGLKAKLEPELVPVITKLGDDILTKPKILASEIISE******************************************************VDPAPIKITIPKDKIIEMPCSSNLKKIKMKDSFENPLKIRISKDFLS***********************
************DRWYFTKEQLENTPSRKCGYDAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQLEQLTEEFLAIFDKCPSKLKKRIC*********************************************************************************************************************************************************************************************************KPHPPPPPPPPPYMSAAKLPPPSHSDVITNVIKEVTYSKQMEKSSILNHKESSISHPPHLSMSIPQTKAPSIFSP**N****I*KTPFKMKTPTPPSFSPIKISPSKSSEGLKAKLEPELVPVITKLGDDILT**K*****************************************************************PAPIKITIPKDKIIEMPCSSNLKKIKMKDSFENPLKIRISKD**************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSTNTTQGSHSPDRWYFTKEQLENTPSRKCGYDAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQLEQLTEEFLAIFDKCPSKLKKRICSISSNQNSTLMAAFDGDSKKMSGLGNATFAPPHSTSGRVTDDKRRSEHNGPPPEYRKLMAGGRDMNSRSSTSSTAVPINSMPSANTNKPPAHVFQTSSSSRVPPPPPPHHHHSSAHVPKIKTEHPPMKVEPVMKEALLKQPPLIKQEPNVKQEPYIKSEPHSLLPLRKHEPINPRMMMNKPQSKPVIPHEVRKNGHDLPVPKPHPPPPPPPPPYMSAAKLPPPSHSDVITNVIKEVTYSKQMEKSSILNHKESSISHPPHLSMSIPQTKAPSIFSPEKNTSPVINKTPFKMKTPTPPSFSPIKISPSKSSEGLKAKLEPELVPVITKLGDDILTKPKILASEIISETKQEPHESHSQHPKKKKKHKEKDKDRDKKHKEKKKHKDDKHKDKRKDKHRESSHVDPAPIKITIPKDKIIEMPCSSNLKKIKMKDSFENPLKIRISKDFLSKDSKKRERDTDDSDYPSSKRMAS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query730 2.2.26 [Sep-21-2011]
O96433 1097 Cyclin-T OS=Drosophila me yes N/A 0.331 0.220 0.689 1e-106
O60583730 Cyclin-T2 OS=Homo sapiens no N/A 0.342 0.342 0.68 1e-105
Q9QWV9724 Cyclin-T1 OS=Mus musculus yes N/A 0.334 0.337 0.688 1e-102
Q6T8E9727 Cyclin-T1 OS=Bos taurus G no N/A 0.334 0.335 0.688 1e-102
Q9XT26727 Cyclin-T1 OS=Equus caball no N/A 0.338 0.339 0.677 1e-102
O60563726 Cyclin-T1 OS=Homo sapiens no N/A 0.338 0.340 0.669 1e-100
Q8HXN7725 Cyclin-T1 OS=Pan troglody no N/A 0.338 0.340 0.669 1e-100
Q2QQS5543 Cyclin-T1-4 OS=Oryza sati yes N/A 0.336 0.453 0.352 2e-39
Q9FKE6579 Cyclin-T1-5 OS=Arabidopsi yes N/A 0.405 0.511 0.310 2e-38
Q2RAC5490 Cyclin-T1-3 OS=Oryza sati no N/A 0.330 0.491 0.336 4e-37
>sp|O96433|CCNT_DROME Cyclin-T OS=Drosophila melanogaster GN=CycT PE=1 SV=2 Back     alignment and function desciption
 Score =  387 bits (993), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 171/248 (68%), Positives = 205/248 (82%), Gaps = 6/248 (2%)

Query: 15  WYFTKEQLENTPSRKCGYDAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYV 74
           WYF+ +QL N+PSR+CG   + EL  RQ  A LIQ+MGQRLQV+QLCINTAIVYMHRFY 
Sbjct: 45  WYFSNDQLANSPSRRCGIKGDDELQYRQMTAYLIQEMGQRLQVSQLCINTAIVYMHRFYA 104

Query: 75  FHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQEQAQ 134
           FHSFT FHRNS+A+A+LFLAAKVEEQPRKLEHVIR A  CL    PP     + Y E AQ
Sbjct: 105 FHSFTHFHRNSMASASLFLAAKVEEQPRKLEHVIRAANKCL----PPTT--EQNYAELAQ 158

Query: 135 EIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQY 194
           E+V NENVLLQTLGFDV I+HPHT+VV+ C LV+A KDLAQTSYF+ASNSLHLT+MCLQY
Sbjct: 159 ELVFNENVLLQTLGFDVAIDHPHTHVVRTCQLVKACKDLAQTSYFLASNSLHLTSMCLQY 218

Query: 195 RSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQLEQLTEEFLAIFDKCPSK 254
           R TVVACFCI+LACKW+ WEIPQS EG+ WF+Y+DK V+ + L+QLT+EF+AI++K P++
Sbjct: 219 RPTVVACFCIYLACKWSRWEIPQSTEGKHWFYYVDKTVSLDLLKQLTDEFIAIYEKSPAR 278

Query: 255 LKKRICSI 262
           LK ++ SI
Sbjct: 279 LKSKLNSI 286
Regulatory subunit of the cyclin-dependent kinase pair (CDK9/cyclin T) complex, also called positive transcription elongation factor B (P-TEFb), which is proposed to facilitate the transition from abortive to production elongation by phosphorylating the CTD (carboxy-terminal domain) of the large subunit of RNA polymerase II (RNAP II).
Drosophila melanogaster (taxid: 7227)
>sp|O60583|CCNT2_HUMAN Cyclin-T2 OS=Homo sapiens GN=CCNT2 PE=1 SV=2 Back     alignment and function description
>sp|Q9QWV9|CCNT1_MOUSE Cyclin-T1 OS=Mus musculus GN=Ccnt1 PE=1 SV=3 Back     alignment and function description
>sp|Q6T8E9|CCNT1_BOVIN Cyclin-T1 OS=Bos taurus GN=CCNT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9XT26|CCNT1_HORSE Cyclin-T1 OS=Equus caballus GN=CCNT1 PE=1 SV=1 Back     alignment and function description
>sp|O60563|CCNT1_HUMAN Cyclin-T1 OS=Homo sapiens GN=CCNT1 PE=1 SV=1 Back     alignment and function description
>sp|Q8HXN7|CCNT1_PANTR Cyclin-T1 OS=Pan troglodytes GN=CCNT1 PE=2 SV=1 Back     alignment and function description
>sp|Q2QQS5|CCT14_ORYSJ Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKE6|CCT15_ARATH Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=2 SV=2 Back     alignment and function description
>sp|Q2RAC5|CCT13_ORYSJ Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query730
332020751 1558 Cyclin-T [Acromyrmex echinatior] 0.353 0.165 0.759 1e-126
307195850 1580 Cyclin-T [Harpegnathos saltator] 0.358 0.165 0.759 1e-126
345479861 1413 PREDICTED: hypothetical protein LOC10011 0.376 0.194 0.750 1e-124
242005329 1966 cyclin t, putative [Pediculus humanus co 0.349 0.129 0.789 1e-121
307165877 1431 Cyclin-T [Camponotus floridanus] 0.353 0.180 0.733 1e-121
427798979 1009 Putative cyclin t, partial [Rhipicephalu 0.341 0.246 0.763 1e-121
383854947 1413 PREDICTED: uncharacterized protein LOC10 0.417 0.215 0.669 1e-121
350422066 1424 PREDICTED: hypothetical protein LOC10074 0.502 0.257 0.576 1e-120
340724930 1421 PREDICTED: hypothetical protein LOC10064 0.408 0.209 0.669 1e-120
328776274 1427 PREDICTED: hypothetical protein LOC41017 0.510 0.261 0.575 1e-119
>gi|332020751|gb|EGI61155.1| Cyclin-T [Acromyrmex echinatior] Back     alignment and taxonomy information
 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 196/258 (75%), Positives = 231/258 (89%)

Query: 13  DRWYFTKEQLENTPSRKCGYDAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRF 72
           +RWYFT+EQL NTPSR+CG D +KELS RQQAAN IQDMGQRL V+QLCINTAIVYMHRF
Sbjct: 5   ERWYFTREQLANTPSRRCGIDGDKELSYRQQAANFIQDMGQRLVVSQLCINTAIVYMHRF 64

Query: 73  YVFHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQEQ 132
           YVFHS T FHRN+IA AA+FLAAKVEEQPRKLEHVI++A +CL ++QPP D RSE + EQ
Sbjct: 65  YVFHSLTHFHRNAIAVAAIFLAAKVEEQPRKLEHVIKMAHMCLHRDQPPPDVRSEQFLEQ 124

Query: 133 AQEIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCL 192
           AQ++V NENVLLQTLGFDV I+HPHT+VV+CC LV+ASKDLAQTSYFMASNSLHLTTMCL
Sbjct: 125 AQDLVFNENVLLQTLGFDVAIDHPHTHVVRCCQLVKASKDLAQTSYFMASNSLHLTTMCL 184

Query: 193 QYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQLEQLTEEFLAIFDKCP 252
           QY+ TVVACFCIHLACKW+NWEIPQS EGR+WFWY+D+ VT + L++LT+EFL IFDKCP
Sbjct: 185 QYKPTVVACFCIHLACKWSNWEIPQSTEGRQWFWYVDRTVTGDLLQELTDEFLHIFDKCP 244

Query: 253 SKLKKRICSISSNQNSTL 270
           S+LK++I  IS+NQ+ ++
Sbjct: 245 SRLKRKIMIISANQSPSI 262

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307195850|gb|EFN77646.1| Cyclin-T [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|345479861|ref|XP_001603520.2| PREDICTED: hypothetical protein LOC100119802 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|242005329|ref|XP_002423522.1| cyclin t, putative [Pediculus humanus corporis] gi|212506636|gb|EEB10784.1| cyclin t, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|307165877|gb|EFN60232.1| Cyclin-T [Camponotus floridanus] Back     alignment and taxonomy information
>gi|427798979|gb|JAA64941.1| Putative cyclin t, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|383854947|ref|XP_003702981.1| PREDICTED: uncharacterized protein LOC100884066 [Megachile rotundata] Back     alignment and taxonomy information
>gi|350422066|ref|XP_003493045.1| PREDICTED: hypothetical protein LOC100740473 [Bombus impatiens] Back     alignment and taxonomy information
>gi|340724930|ref|XP_003400831.1| PREDICTED: hypothetical protein LOC100643058 [Bombus terrestris] Back     alignment and taxonomy information
>gi|328776274|ref|XP_393658.4| PREDICTED: hypothetical protein LOC410174 isoform 1 [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query730
FB|FBgn0025455 1097 CycT "Cyclin T" [Drosophila me 0.390 0.259 0.59 2.3e-100
UNIPROTKB|E2RNV5733 CCNT2 "Uncharacterized protein 0.460 0.458 0.533 2.1e-95
UNIPROTKB|F1NIJ9666 CCNT2 "Uncharacterized protein 0.460 0.504 0.531 1.8e-93
ZFIN|ZDB-GENE-030131-5779630 ccnt2a "cyclin T2a" [Danio rer 0.338 0.392 0.663 4.8e-93
UNIPROTKB|Q6T8E9727 CCNT1 "Cyclin-T1" [Bos taurus 0.334 0.335 0.663 3.8e-92
UNIPROTKB|E2RNV9678 CCNT2 "Uncharacterized protein 0.443 0.477 0.534 4.2e-91
RGD|1309205722 Ccnt2 "cyclin T2" [Rattus norv 0.342 0.346 0.656 1.7e-90
UNIPROTKB|O60583730 CCNT2 "Cyclin-T2" [Homo sapien 0.460 0.460 0.527 2.5e-90
UNIPROTKB|E1B6Z5731 CCNT2 "Uncharacterized protein 0.342 0.341 0.652 3.9e-89
UNIPROTKB|Q9XT26727 CCNT1 "Cyclin-T1" [Equus cabal 0.334 0.335 0.663 8e-89
FB|FBgn0025455 CycT "Cyclin T" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 896 (320.5 bits), Expect = 2.3e-100, Sum P(4) = 2.3e-100
 Identities = 177/300 (59%), Positives = 215/300 (71%)

Query:    15 WYFTKEQLENTPSRKCGYDAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYV 74
             WYF+ +QL N+PSR+CG   + EL  RQ  A LIQ+MGQRLQV+QLCINTAIVYMHRFY 
Sbjct:    45 WYFSNDQLANSPSRRCGIKGDDELQYRQMTAYLIQEMGQRLQVSQLCINTAIVYMHRFYA 104

Query:    75 FHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQEQAQ 134
             FHSFT FHRNS+A+A+LFLAAKVEEQPRKLEHVIR A  CL    PP   ++  Y E AQ
Sbjct:   105 FHSFTHFHRNSMASASLFLAAKVEEQPRKLEHVIRAANKCL----PPTTEQN--YAELAQ 158

Query:   135 EIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVRASKDLAQTSYFMASNSLHLTTMCLQY 194
             E+V NENVLLQTLGFDV I+HPHT+VV+ C LV+A KDLAQTSYF+ASNSLHLT+MCLQY
Sbjct:   159 ELVFNENVLLQTLGFDVAIDHPHTHVVRTCQLVKACKDLAQTSYFLASNSLHLTSMCLQY 218

Query:   195 RSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVXXXXXXXXXXXFLAIFDKCPSK 254
             R TVVACFCI+LACKW+ WEIPQS EG+ WF+Y+DK V           F+AI++K P++
Sbjct:   219 RPTVVACFCIYLACKWSRWEIPQSTEGKHWFYYVDKTVSLDLLKQLTDEFIAIYEKSPAR 278

Query:   255 LKKRICSISS-NQNSTLMAAFDGDSKK--------MSGLGNATFAPPHSTSGRVTDDKRR 305
             LK ++ SI +  Q ++   A   D  K        M G  +    PP   +G  + D+ R
Sbjct:   279 LKSKLNSIKAIAQGASNRTANSKDKPKEDWKITEMMKGYHSNITTPPELLNGNDSRDRDR 338
GO:0008024 "positive transcription elongation factor complex b" evidence=TAS;IPI
GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=ISS
GO:0009408 "response to heat" evidence=IDA
GO:0005700 "polytene chromosome" evidence=IDA
GO:0005703 "polytene chromosome puff" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
GO:0008353 "RNA polymerase II carboxy-terminal domain kinase activity" evidence=TAS
GO:0006351 "transcription, DNA-dependent" evidence=IDA
GO:0007049 "cell cycle" evidence=IMP
GO:0008360 "regulation of cell shape" evidence=IMP
GO:0007015 "actin filament organization" evidence=IMP
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
GO:0019901 "protein kinase binding" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0032783 "ELL-EAF complex" evidence=IPI
UNIPROTKB|E2RNV5 CCNT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NIJ9 CCNT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5779 ccnt2a "cyclin T2a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q6T8E9 CCNT1 "Cyclin-T1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RNV9 CCNT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1309205 Ccnt2 "cyclin T2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O60583 CCNT2 "Cyclin-T2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1B6Z5 CCNT2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9XT26 CCNT1 "Cyclin-T1" [Equus caballus (taxid:9796)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query730
COG5333297 COG5333, CCL1, Cdk activating kinase (CAK)/RNA pol 2e-17
cd0004388 cd00043, CYCLIN, Cyclin box fold 2e-16
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 5e-16
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 5e-14
TIGR00569305 TIGR00569, ccl1, cyclin ccl1 5e-05
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 1e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 2e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 3e-04
>gnl|CDD|227640 COG5333, CCL1, Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information 
 Score = 82.9 bits (205), Expect = 2e-17
 Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 13/177 (7%)

Query: 35  EKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAALFLA 94
           EKEL+       LI D+  RL + Q  + TAI++  RFY+ +S  +    S+ T  ++LA
Sbjct: 39  EKELNLVIYYLKLIMDLCTRLNLPQTVLATAILFFSRFYLKNSVEEISLYSVVTTCVYLA 98

Query: 95  AKVEEQPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGIE 154
            KVE+ PR     I +               S       + I+  E  LL+ L FD+ + 
Sbjct: 99  CKVEDTPRD----ISIESFEARDLWSEEPKSSR------ERILEYEFELLEALDFDLHVH 148

Query: 155 HPHTYVVKCCHLVRA--SKDLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACK 209
           HP+ Y+      ++      L Q ++ + +++L  T +CL Y   ++A   + +AC+
Sbjct: 149 HPYKYLEGFLKDLQEKDKYKLLQIAWKIINDALR-TDLCLLYPPHIIALAALLIACE 204

Length = 297
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|129660 TIGR00569, ccl1, cyclin ccl1 Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 730
KOG0834|consensus323 100.0
KOG0794|consensus264 100.0
TIGR00569305 ccl1 cyclin ccl1. University). 100.0
KOG0835|consensus367 100.0
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.95
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.86
KOG2496|consensus325 99.85
KOG0656|consensus335 99.84
KOG0653|consensus391 99.77
KOG0655|consensus408 99.72
COG5024440 Cyclin [Cell division and chromosome partitioning] 99.71
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 99.65
KOG1598|consensus521 99.64
KOG1597|consensus308 99.6
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.6
KOG0654|consensus359 99.5
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.33
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.16
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 98.76
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 98.54
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.15
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.04
PRK00423310 tfb transcription initiation factor IIB; Reviewed 97.81
KOG4164|consensus497 97.75
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 97.71
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 97.38
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 96.25
KOG1597|consensus308 95.31
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 94.85
PF01857135 RB_B: Retinoblastoma-associated protein B domain; 91.99
PF10278178 Med19: Mediator of RNA pol II transcription subuni 90.15
KOG0835|consensus367 88.82
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 88.67
KOG1674|consensus218 88.24
TIGR00569305 ccl1 cyclin ccl1. University). 87.98
KOG1598|consensus521 87.54
PF10500225 SR-25: Nuclear RNA-splicing-associated protein; In 81.73
>KOG0834|consensus Back     alignment and domain information 
Probab=100.00  E-value=7.3e-45  Score=385.28  Aligned_cols=240  Identities=45%  Similarity=0.763  Sum_probs=223.8

Q ss_pred             CCCCCcccCHHHHh-cCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccchhhHHHH
Q psy11273         10 HSPDRWYFTKEQLE-NTPSRKCGYDAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIAT   88 (730)
Q Consensus        10 ~~~s~WLFT~EQLe-~TPSrrdGIs~e~El~lR~~avd~I~eVg~~LkLPq~TlaTAivyFhRFysrkSi~~~d~qLVAA   88 (730)
                      ..-..|+|++||++ ++||+++|++.+.|...|+.++.||+++|.+|++++.|++||++||||||+.+++..++++.||+
T Consensus         7 ~~~~~w~~s~e~~~~~tpSr~~g~~~~~E~~~r~~~~~fI~elg~~L~~~~~ti~tA~~~~hRFy~~~s~~~~~~~~vA~   86 (323)
T KOG0834|consen    7 GETSRWYFSKEQLEENTPSRRDGIDLKKELRLRQEGAKFIQELGVRLKMPQKTIATAIVIFHRFYMFHSFKKFDPYTVAA   86 (323)
T ss_pred             ccccccccCHHHHccCChhhccCCchhHHHHHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhhhhhcccccCcHHHHHH
Confidence            34579999999998 89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCCHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhc
Q psy11273         89 AALFLAAKVEEQPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVR  168 (730)
Q Consensus        89 ACLFLAcKvEEtprkLrDII~Va~~~l~r~~~~lD~~se~y~~~reeIL~mEr~ILqaL~FDL~V~~P~~FL~rflk~L~  168 (730)
                      +|||||||+||++++++||+.+++.++++..   .+..+.|+++++.|+.+|+.||++|+|||+|.|||.||.+|+..++
T Consensus        87 sclfLAgKvEetp~kl~dIi~~s~~~~~~~~---~~~~~~~~~~~~~Iv~~E~~lL~tl~Fdl~v~hPy~~ll~~~k~l~  163 (323)
T KOG0834|consen   87 SCLFLAGKVEETPRKLEDIIKVSYRYLNPKD---LELEEVYWELKERIVQLELLLLETLGFDLNVEHPYKYLLKYLKKLK  163 (323)
T ss_pred             HHHHHHhhcccCcccHHHHHHHHHHHcCccc---ccHHHHHHHHHHHHHHHHHHHHHHccCceeccCchHHHHHHHHHhh
Confidence            9999999999999999999999999887643   3556789999999999999999999999999999999999999988


Q ss_pred             CCH----HHHHHHHHHHHccccccccccCCcHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccccCCCCHHHHHHHHHHH
Q psy11273        169 ASK----DLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQLEQLTEEF  244 (730)
Q Consensus       169 ~sk----eL~qlA~~ILnDSL~lT~LcL~y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww~~fd~~VT~EqLeeIi~EI  244 (730)
                      ...    .++++||.|++|++ .+.+||+|.|..||+|||+||+.+.|+.+|...+. .||..|+.+++.++|++++.++
T Consensus       164 ~~~~~~~~~a~~Aw~~~nD~~-~t~~cL~y~p~~IAva~i~lA~~~~~~~~~~~~~~-~w~~~~d~~vt~e~l~~i~~~~  241 (323)
T KOG0834|consen  164 ADENLKQPLAQAAWNFVNDSL-RTTLCLQYSPHSIAVACIHLAAKLLGVELPSDTDK-RWWREFDETVTNELLDDICHEF  241 (323)
T ss_pred             hhhhccccHHHHHHHHhchhh-eeeeeEeecCcEEEeehhhHHHHHcCCCCCCCccc-chhhhhcccCCHHHHHHHHHHH
Confidence            754    49999999999987 57799999999999999999999999988876655 8999999999999999999999


Q ss_pred             HHHHhcCChh
Q psy11273        245 LAIFDKCPSK  254 (730)
Q Consensus       245 L~LYe~~ps~  254 (730)
                      +++|+.+...
T Consensus       242 l~~y~~~~~~  251 (323)
T KOG0834|consen  242 LDLYEQTPQR  251 (323)
T ss_pred             HHHHhhcccc
Confidence            9999987644

>KOG0794|consensus Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG0835|consensus Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG2496|consensus Back     alignment and domain information
>KOG0656|consensus Back     alignment and domain information
>KOG0653|consensus Back     alignment and domain information
>KOG0655|consensus Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1598|consensus Back     alignment and domain information
>KOG1597|consensus Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0654|consensus Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG4164|consensus Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1597|consensus Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF01857 RB_B: Retinoblastoma-associated protein B domain; InterPro: IPR002719 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation Back     alignment and domain information
>PF10278 Med19: Mediator of RNA pol II transcription subunit 19 ; InterPro: IPR019403 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes Back     alignment and domain information
>KOG0835|consensus Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1674|consensus Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG1598|consensus Back     alignment and domain information
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query730
2ivx_A257 Crystal Structure Of Human Cyclin T2 At 1.8 A Resol 6e-98
2w2h_A264 Structural Basis Of Transcription Activation By The 8e-95
3mi9_B266 Crystal Structure Of Hiv-1 Tat Complexed With Human 6e-93
2pk2_A358 Cyclin Box Structure Of The P-Tefb Subunit Cyclin T 1e-92
3tnh_B259 Cdk9CYCLIN T IN COMPLEX WITH CAN508 Length = 259 2e-92
3blh_B260 Crystal Structure Of Human Cdk9CYCLINT1 Length = 26 3e-91
2i53_A258 Crystal Structure Of Cyclin K Length = 258 4e-30
3rgf_B285 Crystal Structure Of Human Cdk8CYCC Length = 285 3e-10
>pdb|2IVX|A Chain A, Crystal Structure Of Human Cyclin T2 At 1.8 A Resolution (Casp Target) Length = 257 Back     alignment and structure 
Iteration: 1

 Score =  355 bits (910), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 162/247 (65%), Positives = 199/247 (80%)
Query: 11  SPDRWYFTKEQLENTPSRKCGYDAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMH 70
           +  RW+FT+EQLENTPSR+CG +A+KELSCRQQAANLIQ+MGQRL V+QL INTAIVYMH
Sbjct: 1   ASSRWFFTREQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMH 60
Query: 71  RFYVFHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQ 130
           RFY+ HSFT+F++N I++ ALFLAAKVEEQ RKLEHVI+VA  CL   +P LD + +AY 
Sbjct: 61  RFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKCDAYL 120
Query: 131 EQAQEIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVRASKDLAQTSYFMASNSLHLTTM 190
           +Q +E+V+ E ++LQTLGF++ IEHPHT VVKC  LVRASKDLAQTSYFMA+NSLHLTT 
Sbjct: 121 QQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTF 180
Query: 191 CLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVXXXXXXXXXXXFLAIFDK 250
           CLQY+ TV+AC CIHLACKW+NWEIP S +G+ W+ Y+D  V           FL I +K
Sbjct: 181 CLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILEK 240
Query: 251 CPSKLKK 257
            P++LKK
Sbjct: 241 TPNRLKK 247
>pdb|2W2H|A Chain A, Structural Basis Of Transcription Activation By The Cyclin T1-Tat-Tar Rna Complex From Eiav Length = 264 Back     alignment and structure
>pdb|3MI9|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 266 Back     alignment and structure
>pdb|2PK2|A Chain A, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1 Derived From A Fusion Complex With Eiav Tat Length = 358 Back     alignment and structure
>pdb|3TNH|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508 Length = 259 Back     alignment and structure
>pdb|3BLH|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 Length = 260 Back     alignment and structure
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K Length = 258 Back     alignment and structure
>pdb|3RGF|B Chain B, Crystal Structure Of Human Cdk8CYCC Length = 285 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query730
2ivx_A257 Cyclin-T2; transcription regulation, cell division 3e-84
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 4e-81
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 3e-75
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 3e-58
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 3e-53
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 2e-50
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 8e-11
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 1e-07
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 2e-07
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 2e-06
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 4e-05
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 6e-05
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
 Score =  266 bits (681), Expect = 3e-84
 Identities = 168/247 (68%), Positives = 207/247 (83%)

Query: 11  SPDRWYFTKEQLENTPSRKCGYDAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMH 70
           +  RW+FT+EQLENTPSR+CG +A+KELSCRQQAANLIQ+MGQRL V+QL INTAIVYMH
Sbjct: 1   ASSRWFFTREQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMH 60

Query: 71  RFYVFHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQ 130
           RFY+ HSFT+F++N I++ ALFLAAKVEEQ RKLEHVI+VA  CL   +P LD + +AY 
Sbjct: 61  RFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKCDAYL 120

Query: 131 EQAQEIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVRASKDLAQTSYFMASNSLHLTTM 190
           +Q +E+V+ E ++LQTLGF++ IEHPHT VVKC  LVRASKDLAQTSYFMA+NSLHLTT 
Sbjct: 121 QQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTF 180

Query: 191 CLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQLEQLTEEFLAIFDK 250
           CLQY+ TV+AC CIHLACKW+NWEIP S +G+ W+ Y+D  VT E L++LT EFL I +K
Sbjct: 181 CLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILEK 240

Query: 251 CPSKLKK 257
            P++LKK
Sbjct: 241 TPNRLKK 247
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 285 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query730
2ivx_A257 Cyclin-T2; transcription regulation, cell division 100.0
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 100.0
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 100.0
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 100.0
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 99.97
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 99.97
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.97
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 99.97
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 99.97
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 99.96
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 99.96
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.94
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 99.94
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 99.94
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.9
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.82
1ais_B200 TFB TFIIB, protein (transcription initiation facto 98.06
1c9b_A207 General transcription factor IIB; protein-DNA comp 97.49
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 97.33
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 95.72
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 95.68
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 93.11
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 92.71
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 91.86
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 91.75
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 91.64
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 91.58
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 91.2
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 90.9
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 90.85
2ivx_A257 Cyclin-T2; transcription regulation, cell division 90.84
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 90.61
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 90.06
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 89.01
3h4c_A260 Transcription factor TFIIB-like; cyclin, transcrip 87.19
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 86.9
3m03_A95 ORC6, origin recognition complex subunit 6; helix 85.47
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
Probab=100.00  E-value=1.7e-48  Score=395.79  Aligned_cols=254  Identities=67%  Similarity=1.133  Sum_probs=236.7

Q ss_pred             CCCcccCHHHHhcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccchhhHHHHHHH
Q psy11273         12 PDRWYFTKEQLENTPSRKCGYDAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAAL   91 (730)
Q Consensus        12 ~s~WLFT~EQLe~TPSrrdGIs~e~El~lR~~avd~I~eVg~~LkLPq~TlaTAivyFhRFysrkSi~~~d~qLVAAACL   91 (730)
                      .++||||+|||+++||+.+|++.+.|..+|..+++||.++|..|+|++.|+++|++||||||.++++.++++++||+|||
T Consensus         2 ~~~w~~t~e~l~~~ps~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL   81 (257)
T 2ivx_A            2 SSRWFFTREQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTAL   81 (257)
T ss_dssp             CGGGSCCHHHHHSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHH
T ss_pred             CCCeeecHHHHHhChHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCCCCCHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhcCCH
Q psy11273         92 FLAAKVEEQPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGIEHPHTYVVKCCHLVRASK  171 (730)
Q Consensus        92 FLAcKvEEtprkLrDII~Va~~~l~r~~~~lD~~se~y~~~reeIL~mEr~ILqaL~FDL~V~~P~~FL~rflk~L~~sk  171 (730)
                      |||||+||++++++||+.+++.+.++..+.++..+..|.+.+++|+.||+.||++|+|+|.+++|+.||.+|++.++.+.
T Consensus        82 ~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~  161 (257)
T 2ivx_A           82 FLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASK  161 (257)
T ss_dssp             HHHHHHTTCCCCHHHHHHHHHHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCH
T ss_pred             HHHhccccCCcCHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCc
Confidence            99999999999999999999988887766677778899988999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccccccccccCCcHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHHhcC
Q psy11273        172 DLAQTSYFMASNSLHLTTMCLQYRSTVVACFCIHLACKWANWEIPQSNEGRKWFWYIDKEVTQEQLEQLTEEFLAIFDKC  251 (730)
Q Consensus       172 eL~qlA~~ILnDSL~lT~LcL~y~PS~IAAAAIyLAakllgi~iP~~~eg~~Ww~~fd~~VT~EqLeeIi~EIL~LYe~~  251 (730)
                      ++.+.||++++++++.+++|++|+|+.||+||||+|+.++|.++|+..++..||..|+.+++.++|++|+.+|+++|+.+
T Consensus       162 ~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~~~~~~~  241 (257)
T 2ivx_A          162 DLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILEKT  241 (257)
T ss_dssp             HHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHHHHHHhC
Confidence            99999999999987558889999999999999999999999999887667889999988999999999999999999999


Q ss_pred             ChhHHHHhhcccCCC
Q psy11273        252 PSKLKKRICSISSNQ  266 (730)
Q Consensus       252 ps~Lrkrl~e~s~tq  266 (730)
                      ++.|++ ++.+..+|
T Consensus       242 ~~~l~~-~~~~~~~~  255 (257)
T 2ivx_A          242 PNRLKK-IRNWRANQ  255 (257)
T ss_dssp             HHHHHH-HHHHHHHH
T ss_pred             hHHhhH-HHHhhhhc
Confidence            998874 55444443
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 730
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 5e-47
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 3e-42
d2ivxa2113 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapien 1e-38
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 2e-23
d2i53a2110 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens 2e-21
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 2e-08
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 4e-08
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 2e-07
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 4e-05
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 2e-04
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin-T2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  161 bits (408), Expect = 5e-47
 Identities = 95/143 (66%), Positives = 121/143 (84%)

Query: 11  SPDRWYFTKEQLENTPSRKCGYDAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMH 70
           +  RW+FT+EQLENTPSR+CG +A+KELSCRQQAANLIQ+MGQRL V+QL INTAIVYMH
Sbjct: 1   ASSRWFFTREQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMH 60

Query: 71  RFYVFHSFTQFHRNSIATAALFLAAKVEEQPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQ 130
           RFY+ HSFT+F++N I++ ALFLAAKVEEQ RKLEHVI+VA  CL   +P LD + +AY 
Sbjct: 61  RFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKCDAYL 120

Query: 131 EQAQEIVVNENVLLQTLGFDVGI 153
           +Q +E+V+ E ++LQTLGF++ I
Sbjct: 121 QQTRELVILETIMLQTLGFEITI 143
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 110 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query730
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.97
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.96
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.89
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.84
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.71
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.65
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.65
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 99.63
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 99.62
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.61
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 98.96
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 98.88
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 98.85
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 98.72
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 98.6
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 98.41
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 98.13
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 98.12
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.63
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.55
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 96.11
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 93.68
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 93.53
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 93.33
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 92.89
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 92.84
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 92.78
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 92.19
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 92.06
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 92.04
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin-T2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.2e-31  Score=245.30  Aligned_cols=142  Identities=67%  Similarity=1.099  Sum_probs=135.9

Q ss_pred             CCCcccCHHHHhcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccchhhHHHHHHH
Q psy11273         12 PDRWYFTKEQLENTPSRKCGYDAEKELSCRQQAANLIQDMGQRLQVTQLCINTAIVYMHRFYVFHSFTQFHRNSIATAAL   91 (730)
Q Consensus        12 ~s~WLFT~EQLe~TPSrrdGIs~e~El~lR~~avd~I~eVg~~LkLPq~TlaTAivyFhRFysrkSi~~~d~qLVAAACL   91 (730)
                      .++||||+++|+++||+.+||+.++|..+|..+++||.++|..|+|++.|+++|++||||||+++++..+++++||+|||
T Consensus         2 ~~~w~~t~~~l~~~pS~~~gi~~~~E~~~R~~~~~~i~~~~~~l~l~~~t~~~A~~l~~Rf~~~~s~~~~~~~~va~acl   81 (143)
T d2ivxa1           2 SSRWFFTREQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTAL   81 (143)
T ss_dssp             CGGGSCCHHHHHSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHH
T ss_pred             CCCCCCCHHHHHhCcccccCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCccccCHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCCCCCHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCcccc
Q psy11273         92 FLAAKVEEQPRKLEHVIRVAQLCLFKNQPPLDPRSEAYQEQAQEIVVNENVLLQTLGFDVGI  153 (730)
Q Consensus        92 FLAcKvEEtprkLrDII~Va~~~l~r~~~~lD~~se~y~~~reeIL~mEr~ILqaL~FDL~V  153 (730)
                      |||||+||+++++++++.+++.+.++.....+..++.|.+++++|+.||+.||++|||||+|
T Consensus        82 ~LA~K~eE~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~Fdl~V  143 (143)
T d2ivxa1          82 FLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITI  143 (143)
T ss_dssp             HHHHHHTTCCCCHHHHHHHHHHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred             HHHHHhccccccHHHHHHHHHHHhcccchhhhhchhhhHHHHHHHHHHHHHHHHHcCCeeeC
Confidence            99999999999999999999988887766677778899999999999999999999999975
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure