Psyllid ID: psy11352

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------
Protein Sequence
MNFHYKPSTLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRHPHISP
Secondary Structure (PSIPRED)
cccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHccccccccccccccccccccccccccccccccEEEEEEEEcccEEEcccccHEHHHHcccccEcccccccccccHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mnfhykpstlhflisdhcltsplsssipgssktkasgsgttggssnhsKLFATCFVCgkqlsnqynLRVHMETHqnafyacsscshvsrSRDALRKhvsyrhphisp
Flexible Loop (DISEMBL)
MNFHYKPSTLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRkhvsyrhphisp
Low Complexity Region (SEG)
MNFHYKPSTLHFLISDHCltsplsssipgssktkasgsgttggssnhskLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRHPHISP
Disordered region (IsUnstruct)
********TLHFLISDHCL*****************************KLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSH*********************
Disordered Region (DISOPRED)
*****************************************************CFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRK*****H*****
Disordered Region (DISEMBL)
MNFHYKPSTLHFLISDHCLTSPL*********************SNHSKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSS**********LRKHVS********
Disordered Region (DISPRO)
*******STLHFLIS*HC****************************HSKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRH*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNFHYKPSTLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRHPHISP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	107	2.2.26 [Sep-21-2011]
P57071	1507	PR domain zinc finger pro	yes	N/A	0.523	0.037	0.298	0.0004
Q91ZD1	312	Protein odd-skipped-relat	yes	N/A	0.738	0.253	0.325	0.0006
Q8N2R0	312	Protein odd-skipped-relat	no	N/A	0.738	0.253	0.325	0.0007

>sp|P57071|PRD15_HUMAN PR domain zinc finger protein 15 OS=Homo sapiens GN=PRDM15 PE=2 SV=4

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 46  NHSKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRH 102
            H +++  C +C K   N  NL  H+ +H +  + C  C+ +   +++L++HVSY+H
Sbjct: 733 EHKRVY-QCNICSKIFQNSSNLSRHVRSHGDKLFKCEECAKLFSRKESLKQHVSYKH 788

May be involved in transcriptional regulation.
Homo sapiens (taxid: 9606)

>sp|Q91ZD1|OSR2_MOUSE Protein odd-skipped-related 2 OS=Mus musculus GN=Osr2 PE=1 SV=1

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 1/80 (1%)

Query: 19  LTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQNAF 78
           L+  L S I G SK       + G   + +K    C  CG+  +  YNL +H  TH +  
Sbjct: 139 LSPGLGSPISGLSKLNPDRKPSRGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDER 198

Query: 79  -YACSSCSHVSRSRDALRKH 97
            Y C  C    R +D LR H
Sbjct: 199 PYTCDICHKAFRRQDHLRDH 218

Mus musculus (taxid: 10090)

>sp|Q8N2R0|OSR2_HUMAN Protein odd-skipped-related 2 OS=Homo sapiens GN=OSR2 PE=2 SV=2

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 1/80 (1%)

Query: 19  LTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQNAF 78
           L+  L S I G SK       + G   + +K    C  CG+  +  YNL +H  TH +  
Sbjct: 139 LSPGLGSPISGLSKLTPDRKPSRGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDER 198

Query: 79  -YACSSCSHVSRSRDALRKH 97
            Y C  C    R +D LR H
Sbjct: 199 PYTCDICHKAFRRQDHLRDH 218

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
193591953	324	PREDICTED: zinc finger protein 131-like	0.915	0.302	0.575	5e-23
307186839	341	Protein bric-a-brac 2 [Camponotus florid	0.626	0.196	0.753	3e-22
195377894	628	GJ13592 [Drosophila virilis] gi|19415488	0.644	0.109	0.710	3e-22
170054867	666	conserved hypothetical protein [Culex qu	0.523	0.084	0.821	4e-22
195020144	638	GH14679 [Drosophila grimshawi] gi|193898	0.532	0.089	0.824	4e-22
242003048	436	zinc finger protein and BTB domain-conta	0.532	0.130	0.842	5e-22
195129063	650	GI13789 [Drosophila mojavensis] gi|19392	0.532	0.087	0.824	5e-22
157130500	672	hypothetical protein AaeL_AAEL011779 [Ae	0.523	0.083	0.821	5e-22
194752385	653	GF10955 [Drosophila ananassae] gi|190625	0.532	0.087	0.824	5e-22
195590068	624	GD12665 [Drosophila simulans] gi|1941967	0.532	0.091	0.824	5e-22

>gi|193591953|ref|XP_001946753.1| PREDICTED: zinc finger protein 131-like isoform 1 [Acyrthosiphon pisum] gi|328715555|ref|XP_003245660.1| PREDICTED: zinc finger protein 131-like isoform 2 [Acyrthosiphon pisum] gi|328715558|ref|XP_003245661.1| PREDICTED: zinc finger protein 131-like isoform 3 [Acyrthosiphon pisum]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 67/99 (67%), Gaps = 1/99 (1%)

Query: 5   YKPSTLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQ 64
           +KPST    +S +   +P  + +      + S S      +  SKL+  CF+CGKQLSN 
Sbjct: 200 HKPSTSEINVS-YGEEAPTPTDLVQGPVVQGSQSDNIKSRTPVSKLYTMCFICGKQLSNH 258

Query: 65  YNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRHP 103
           YNLRVHMETHQNA YACS CSHVSRSRDALRKHVSYRHP
Sbjct: 259 YNLRVHMETHQNAQYACSVCSHVSRSRDALRKHVSYRHP 297

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186839|gb|EFN72256.1| Protein bric-a-brac 2 [Camponotus floridanus]

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/69 (75%), Positives = 58/69 (84%), Gaps = 2/69 (2%)

Query: 35  ASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDAL 94
           AS SG T  + N S +  TCF+CGKQLSNQYNLRVHMETH N+ Y+C+SCSHVSRSRDAL
Sbjct: 258 ASASGKTSQTYNKSSV--TCFICGKQLSNQYNLRVHMETHSNSSYSCTSCSHVSRSRDAL 315

Query: 95  RKHVSYRHP 103
           RKHVSYRHP
Sbjct: 316 RKHVSYRHP 324

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195377894|ref|XP_002047722.1| GJ13592 [Drosophila virilis] gi|194154880|gb|EDW70064.1| GJ13592 [Drosophila virilis]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/69 (71%), Positives = 56/69 (81%)

Query: 35  ASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDAL 94
           A    T     ++SKL+ATCF+C KQLSNQYNLRVH+ETHQN  YAC+ CSHVSRS+DAL
Sbjct: 447 AEKMPTANKPPSNSKLYATCFICHKQLSNQYNLRVHLETHQNVRYACNVCSHVSRSKDAL 506

Query: 95  RKHVSYRHP 103
           RKHVSYRHP
Sbjct: 507 RKHVSYRHP 515

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170054867|ref|XP_001863324.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167875011|gb|EDS38394.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 46/56 (82%), Positives = 52/56 (92%)

Query: 48  SKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRHP 103
           +KL+ATCF+C KQLSNQYNLRVH+ETHQN  YAC+ CSHVSRS+DALRKHVSYRHP
Sbjct: 436 TKLYATCFICNKQLSNQYNLRVHLETHQNVRYACTVCSHVSRSKDALRKHVSYRHP 491

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195020144|ref|XP_001985131.1| GH14679 [Drosophila grimshawi] gi|193898613|gb|EDV97479.1| GH14679 [Drosophila grimshawi]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 47/57 (82%), Positives = 53/57 (92%)

Query: 47  HSKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRHP 103
           +SKL+ATCF+C KQLSNQYNLRVH+ETHQN  YAC+ CSHVSRS+DALRKHVSYRHP
Sbjct: 458 NSKLYATCFICHKQLSNQYNLRVHLETHQNVRYACNVCSHVSRSKDALRKHVSYRHP 514

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242003048|ref|XP_002422590.1| zinc finger protein and BTB domain-containing protein, putative [Pediculus humanus corporis] gi|212505391|gb|EEB09852.1| zinc finger protein and BTB domain-containing protein, putative [Pediculus humanus corporis]

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/57 (84%), Positives = 52/57 (91%)

Query: 47  HSKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRHP 103
            SK+FATC VCGKQLSNQYNLRVH+ETHQN  YAC+ C+HVSRSRDALRKHVSYRHP
Sbjct: 336 QSKVFATCHVCGKQLSNQYNLRVHLETHQNVQYACTVCTHVSRSRDALRKHVSYRHP 392

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195129063|ref|XP_002008978.1| GI13789 [Drosophila mojavensis] gi|193920587|gb|EDW19454.1| GI13789 [Drosophila mojavensis]

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 47/57 (82%), Positives = 53/57 (92%)

Query: 47  HSKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRHP 103
           +SKL+ATCF+C KQLSNQYNLRVH+ETHQN  YAC+ CSHVSRS+DALRKHVSYRHP
Sbjct: 473 NSKLYATCFICHKQLSNQYNLRVHLETHQNVRYACNVCSHVSRSKDALRKHVSYRHP 529

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157130500|ref|XP_001661900.1| hypothetical protein AaeL_AAEL011779 [Aedes aegypti] gi|108871884|gb|EAT36109.1| AAEL011779-PA [Aedes aegypti]

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 46/56 (82%), Positives = 52/56 (92%)

Query: 48  SKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRHP 103
           +KL+ATCF+C KQLSNQYNLRVH+ETHQN  YAC+ CSHVSRS+DALRKHVSYRHP
Sbjct: 437 TKLYATCFICNKQLSNQYNLRVHLETHQNVRYACTVCSHVSRSKDALRKHVSYRHP 492

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194752385|ref|XP_001958503.1| GF10955 [Drosophila ananassae] gi|190625785|gb|EDV41309.1| GF10955 [Drosophila ananassae]

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 47/57 (82%), Positives = 53/57 (92%)

Query: 47  HSKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRHP 103
           +SKL+ATCF+C KQLSNQYNLRVH+ETHQN  YAC+ CSHVSRS+DALRKHVSYRHP
Sbjct: 476 NSKLYATCFICHKQLSNQYNLRVHLETHQNVRYACNVCSHVSRSKDALRKHVSYRHP 532

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195590068|ref|XP_002084769.1| GD12665 [Drosophila simulans] gi|194196778|gb|EDX10354.1| GD12665 [Drosophila simulans]

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 47/57 (82%), Positives = 53/57 (92%)

Query: 47  HSKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRHP 103
           +SKL+ATCF+C KQLSNQYNLRVH+ETHQN  YAC+ CSHVSRS+DALRKHVSYRHP
Sbjct: 443 NSKLYATCFICHKQLSNQYNLRVHLETHQNVRYACNVCSHVSRSKDALRKHVSYRHP 499

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
FB|FBgn0052121	648	CG32121 [Drosophila melanogast	0.504	0.083	0.833	3e-21
WB|WBGene00022592	386	ZC328.2 [Caenorhabditis elegan	0.504	0.139	0.4	1.2e-05
UNIPROTKB|Q4W8S1	478	ZNF298 "Zinc finger protein ZN	0.457	0.102	0.326	2.6e-05
UNIPROTKB|E9PGL3	555	PRDM15 "PR domain zinc finger	0.457	0.088	0.326	3.2e-05
FB|FBgn0030206	581	CG2889 [Drosophila melanogaste	0.457	0.084	0.408	4.4e-05
ZFIN|ZDB-GENE-080212-4	363	zgc:174311 "zgc:174311" [Danio	0.504	0.148	0.314	4.6e-05
UNIPROTKB|E1BEG7	1135	PRDM15 "Uncharacterized protei	0.457	0.043	0.326	4.8e-05
UNIPROTKB|G3N2K5	1238	PRDM15 "Uncharacterized protei	0.457	0.039	0.326	5.3e-05
ZFIN|ZDB-GENE-070927-11	358	gb:am422109 "expressed sequenc	0.514	0.153	0.309	5.9e-05
ZFIN|ZDB-GENE-080215-13	358	zgc:174700 "zgc:174700" [Danio	0.514	0.153	0.309	5.9e-05

FB|FBgn0052121 CG32121 [Drosophila melanogaster (taxid:7227)]

 Score = 258 (95.9 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 45/54 (83%), Positives = 50/54 (92%)

Query:    50 LFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRHP 103
             L+ATCF+C KQLSNQYNLRVH+ETHQN  YAC+ CSHVSRS+DALRKHVSYRHP
Sbjct:   470 LYATCFICHKQLSNQYNLRVHLETHQNVRYACNVCSHVSRSKDALRKHVSYRHP 523

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

WB|WBGene00022592 ZC328.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 110 (43.8 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query:    54 CFVCGKQLSNQYNLRVHMETHQNAF-YACSSCSHVSRSRDALRKHVSYRHPHISP 107
             C  CG+  S   +LR H  TH +   Y C  C++ +R RD L +H+S RH  I+P
Sbjct:   277 CEDCGRFFSRSDHLRTHRRTHTDEKPYHCCVCNYSARRRDVLTRHMSTRHQAIAP 331

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q4W8S1 ZNF298 "Zinc finger protein ZNF298d" [Homo sapiens (taxid:9606)]

 Score = 108 (43.1 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query:    54 CFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRH 102
             C +C K   N  NL  H+ +H +  + C  C+ +   +++L++HVSY+H
Sbjct:   354 CNICSKIFQNSSNLSRHVRSHGDKLFKCEECAKLFSRKESLKQHVSYKH 402

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E9PGL3 PRDM15 "PR domain zinc finger protein 15" [Homo sapiens (taxid:9606)]

 Score = 108 (43.1 bits), Expect = 3.2e-05, P = 3.2e-05
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query:    54 CFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRH 102
             C +C K   N  NL  H+ +H +  + C  C+ +   +++L++HVSY+H
Sbjct:   411 CNICSKIFQNSSNLSRHVRSHGDKLFKCEECAKLFSRKESLKQHVSYKH 459

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0030206 CG2889 [Drosophila melanogaster (taxid:7227)]

 Score = 107 (42.7 bits), Expect = 4.4e-05, P = 4.4e-05
 Identities = 20/49 (40%), Positives = 26/49 (53%)

Query:    54 CFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRH 102
             C +C   L N+++LR+H  TH +    C  C     SR ALR HV Y H
Sbjct:   454 CPICRVWLKNEHSLRLHRFTHDSTDTVCPHCGKTCTSRTALRGHVKYAH 502

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-080212-4 zgc:174311 "zgc:174311" [Danio rerio (taxid:7955)]

 Score = 93 (37.8 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query:    54 CFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRHPHISP 107
             C  CGK L+++ +++ HMETH    + CS C    + + +L  H+   +   SP
Sbjct:   308 CDQCGKSLTHKDSIKNHMETHSVECFRCSKCGKDFKHKRSLNTHMKLHNGEQSP 361

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BEG7 PRDM15 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 110 (43.8 bits), Expect = 4.8e-05, P = 4.8e-05
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query:    54 CFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRH 102
             C +C K   N  NL  H+ +H +  + C  C+ +   +++L++HVSY+H
Sbjct:   369 CSICSKVFQNSSNLSRHVRSHGDKLFKCEECAKLFSRKESLKQHVSYKH 417

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|G3N2K5 PRDM15 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 110 (43.8 bits), Expect = 5.3e-05, P = 5.3e-05
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query:    54 CFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRH 102
             C +C K   N  NL  H+ +H +  + C  C+ +   +++L++HVSY+H
Sbjct:   472 CSICSKVFQNSSNLSRHVRSHGDKLFKCEECAKLFSRKESLKQHVSYKH 520

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-070927-11 gb:am422109 "expressed sequence AM422109" [Danio rerio (taxid:7955)]

 Score = 103 (41.3 bits), Expect = 5.9e-05, P = 5.9e-05
 Identities = 17/55 (30%), Positives = 31/55 (56%)

Query:    53 TCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRHPHISP 107
             TC +CGK L+++Y+++ HM+TH    + C  C    + + +L  H+   +   SP
Sbjct:   302 TCDLCGKSLTHKYSIKNHMKTHSGERFICIECGKGFKHKRSLSNHMELHNGEQSP 356

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-080215-13 zgc:174700 "zgc:174700" [Danio rerio (taxid:7955)]

 Score = 103 (41.3 bits), Expect = 5.9e-05, P = 5.9e-05
 Identities = 17/55 (30%), Positives = 31/55 (56%)

Query:    53 TCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRHPHISP 107
             TC +CGK L+++Y+++ HM+TH    + C  C    + + +L  H+   +   SP
Sbjct:   302 TCDLCGKSLTHKYSIKNHMKTHSGERFICIECGKDFKHKRSLSNHMELHNGEQSP 356

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	107
KOG2462|consensus	279		99.88
KOG2462|consensus	279		99.87
KOG3623|consensus	1007		99.68
KOG3576|consensus	267		99.59
PHA00733	128	hypothetical protein	99.53
KOG3623|consensus	1007		99.49
KOG3576|consensus	267		99.48
PHA02768	55	hypothetical protein; Provisional	99.4
KOG1074|consensus	958		99.26
KOG3608|consensus	467		99.2
KOG1074|consensus	958		99.14
KOG3608|consensus	467		99.07
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	99.04
KOG3993|consensus	500		98.89
PHA00732	79	hypothetical protein	98.8
PHA00733	128	hypothetical protein	98.78
PHA00616	44	hypothetical protein	98.77
PHA00616	44	hypothetical protein	98.72
PLN03086	567	PRLI-interacting factor K; Provisional	98.72
PLN03086	567	PRLI-interacting factor K; Provisional	98.69
PHA02768	55	hypothetical protein; Provisional	98.56
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.54
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.44
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.35
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.32
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.28
PHA00732	79	hypothetical protein	98.18
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.08
KOG3993|consensus	500		98.07
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.04
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.0
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.83
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.78
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.73
smart00355	26	ZnF_C2H2 zinc finger.	97.72
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.72
smart00355	26	ZnF_C2H2 zinc finger.	97.7
PRK04860	160	hypothetical protein; Provisional	97.7
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.6
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.5
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.45
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.37
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.26
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.22
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.85
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.78
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	96.59
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	96.38
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	95.84
PRK04860	160	hypothetical protein; Provisional	95.61
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	95.55
KOG2186|consensus	276		95.11
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	94.68
KOG1146|consensus	1406		94.59
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	94.58
KOG2893|consensus	341		94.58
COG4049	65	Uncharacterized protein containing archaeal-type C	94.03
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	94.01
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	93.97
KOG4173|consensus	253		93.84
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	93.66
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	93.25
COG5048	467	FOG: Zn-finger [General function prediction only]	93.16
COG5048	467	FOG: Zn-finger [General function prediction only]	93.02
COG5236	493	Uncharacterized conserved protein, contains RING Z	92.03
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	91.89
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	91.76
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	91.74
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	91.68
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	91.47
PHA00626	59	hypothetical protein	91.47
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	91.47
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	91.33
COG1592	166	Rubrerythrin [Energy production and conversion]	90.71
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	90.39
smart00531	147	TFIIE Transcription initiation factor IIE.	90.09
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	90.05
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	89.69
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	89.52
PRK06266	178	transcription initiation factor E subunit alpha; V	89.51
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	89.36
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	89.22
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	89.18
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	89.09
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	89.06
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	89.05
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	88.17
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	87.66
KOG1146|consensus	1406		87.49
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	86.83
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	86.29
PF01096	39	TFIIS_C: Transcription factor S-II (TFIIS); InterP	86.22
COG3357	97	Predicted transcriptional regulator containing an	86.21
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	85.8
TIGR01206	54	lysW lysine biosynthesis protein LysW. This very s	85.71
KOG2186|consensus	276		85.3
PF01927	147	Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 T	84.78
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	84.14
PRK09678	72	DNA-binding transcriptional regulator; Provisional	83.42
KOG4167|consensus	907		83.2
PF14353	128	CpXC: CpXC protein	83.19
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	82.92
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	82.83
cd00730	50	rubredoxin Rubredoxin; nonheme iron binding domain	82.26
TIGR00244	147	transcriptional regulator NrdR. Members of this al	81.54
PF08790	28	zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IP	81.3
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	81.12
COG3677	129	Transposase and inactivated derivatives [DNA repli	80.93
COG1327	156	Predicted transcriptional regulator, consists of a	80.8

>KOG2462|consensus

Probab=99.88  E-value=1.3e-23  Score=128.00  Aligned_cols=77  Identities=27%  Similarity=0.379  Sum_probs=40.3

Q ss_pred             cccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccC
Q psy11352         12 FLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRS   90 (107)
Q Consensus        12 ~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~   90 (107)
                      +++|.+|   ++.|..+..|.-|   .++|+|+     +||.|+.|++.|...++|+.|+++|.+ |+|+|..|+|.|+.
T Consensus       187 ~c~C~iC---GKaFSRPWLLQGH---iRTHTGE-----KPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl  255 (279)
T KOG2462|consen  187 PCECGIC---GKAFSRPWLLQGH---IRTHTGE-----KPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFAL  255 (279)
T ss_pred             Ccccccc---cccccchHHhhcc---cccccCC-----CCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHH
Confidence            4455555   5555555555555   5555555     555555555555555555555555555 55555555555555


Q ss_pred             hHHHHHHHH
Q psy11352         91 RDALRKHVS   99 (107)
Q Consensus        91 ~~~l~~H~~   99 (107)
                      .+.|.+|..
T Consensus       256 ~SyLnKH~E  264 (279)
T KOG2462|consen  256 KSYLNKHSE  264 (279)
T ss_pred             HHHHHHhhh
Confidence            555555543

>KOG2462|consensus

Probab=99.87  E-value=2.5e-23  Score=126.85  Aligned_cols=87  Identities=22%  Similarity=0.374  Sum_probs=80.3

Q ss_pred             CCCcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCC
Q psy11352          7 PSTLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCS   85 (107)
Q Consensus         7 ~~~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~   85 (107)
                      -...+.+.|++|   ++.+.+...|+.|   .++|+..       ++|.+|||.|...=-|+.|+|+|+| |||.|+.|+
T Consensus       156 ~~s~ka~~C~~C---~K~YvSmpALkMH---irTH~l~-------c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~  222 (279)
T KOG2462|consen  156 LDSKKAFSCKYC---GKVYVSMPALKMH---IRTHTLP-------CECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCG  222 (279)
T ss_pred             ccccccccCCCC---CceeeehHHHhhH---hhccCCC-------cccccccccccchHHhhcccccccCCCCccCCccc
Confidence            344788999999   9999999999999   8888854       9999999999999999999999999 999999999


Q ss_pred             CcccChHHHHHHHHccCCCCCC
Q psy11352         86 HVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        86 ~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      ++|...++|+.||+| |.+.|+
T Consensus       223 kAFADRSNLRAHmQT-HS~~K~  243 (279)
T KOG2462|consen  223 KAFADRSNLRAHMQT-HSDVKK  243 (279)
T ss_pred             chhcchHHHHHHHHh-hcCCcc
Confidence            999999999999998 887764

>KOG3623|consensus

Probab=99.68  E-value=2.5e-18  Score=116.39  Aligned_cols=84  Identities=15%  Similarity=0.292  Sum_probs=78.6

Q ss_pred             cCCCCcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352          5 YKPSTLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus         5 ~~~~~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      ++....-.|.|+.|   .+.|...++|.+|   .-.|+|.     +||.|.+|.|.|..+..|..|+|.|.| |||+|+.
T Consensus       887 ~~kte~gmyaCDqC---DK~FqKqSSLaRH---KYEHsGq-----RPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdK  955 (1007)
T KOG3623|consen  887 HAKTEDGMYACDQC---DKAFQKQSSLARH---KYEHSGQ-----RPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDK  955 (1007)
T ss_pred             cccCccccchHHHH---HHHHHhhHHHHHh---hhhhcCC-----CCcccchhhHhhhhhhhhhhhhhhccCCCcchhhh
Confidence            33444668999999   9999999999999   8899999     999999999999999999999999999 9999999


Q ss_pred             CCCcccChHHHHHHHH
Q psy11352         84 CSHVSRSRDALRKHVS   99 (107)
Q Consensus        84 C~~~f~~~~~l~~H~~   99 (107)
                      |+|.|+..+...+||.
T Consensus       956 ClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  956 CLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             hhhhcccccchHhhhc
Confidence            9999999999999996

>KOG3576|consensus

Probab=99.59  E-value=1.9e-17  Score=97.69  Aligned_cols=82  Identities=21%  Similarity=0.370  Sum_probs=52.9

Q ss_pred             ccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCccc
Q psy11352         11 HFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSR   89 (107)
Q Consensus        11 ~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~   89 (107)
                      ..|.|..|   ++.|....-|.+|   +.-|...     +.+.|..||+.|.....|++|+++|+| +||+|..|+++|.
T Consensus       116 d~ftCrvC---gK~F~lQRmlnrh---~kch~~v-----kr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaft  184 (267)
T KOG3576|consen  116 DSFTCRVC---GKKFGLQRMLNRH---LKCHSDV-----KRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFT  184 (267)
T ss_pred             Ceeeeehh---hhhhhHHHHHHHH---hhhccHH-----HHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHH
Confidence            34666666   6666666666666   6666655     666666666666666666666666666 6666666666666


Q ss_pred             ChHHHHHHHHccCC
Q psy11352         90 SRDALRKHVSYRHP  103 (107)
Q Consensus        90 ~~~~l~~H~~~~H~  103 (107)
                      +.-.|..|.+.+|.
T Consensus       185 qrcsleshl~kvhg  198 (267)
T KOG3576|consen  185 QRCSLESHLKKVHG  198 (267)
T ss_pred             hhccHHHHHHHHcC
Confidence            66666666665453

>PHA00733 hypothetical protein

Probab=99.53  E-value=3.7e-15  Score=83.77  Aligned_cols=93  Identities=18%  Similarity=0.208  Sum_probs=72.5

Q ss_pred             ccccCCCCcccccCCCCCCCCCccCCCCCCCCCCC--CCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCCCcc
Q psy11352          2 NFHYKPSTLHFLISDHCLTSPLSSSIPGSSKTKAS--GSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQNAFY   79 (107)
Q Consensus         2 ~~h~~~~~~~~~~C~~C~~~~~~~~~~~~l~~h~~--~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~   79 (107)
                      .+|.=+...+++.|..|   ...|..+..|..+..  ......+.     .+|.|+.|++.|.....|..|++.+. .+|
T Consensus        30 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~l~~~~~~~~~-----kPy~C~~Cgk~Fss~s~L~~H~r~h~-~~~  100 (128)
T PHA00733         30 RYHSLTPEQKRLIRAVV---KTLIYNPQLLDESSYLYKLLTSKAV-----SPYVCPLCLMPFSSSVSLKQHIRYTE-HSK  100 (128)
T ss_pred             hhhcCChhhhhHHHHHH---hhhccChhhhcchHHHHhhcccCCC-----CCccCCCCCCcCCCHHHHHHHHhcCC-cCc
Confidence            34555667889999999   888887776665411  01112224     78999999999999999999998763 579


Q ss_pred             cCCCCCCcccChHHHHHHHHccCC
Q psy11352         80 ACSSCSHVSRSRDALRKHVSYRHP  103 (107)
Q Consensus        80 ~C~~C~~~f~~~~~l~~H~~~~H~  103 (107)
                      .|..|++.|.....|..|+...|.
T Consensus       101 ~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733        101 VCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             cCCCCCCccCCHHHHHHHHHHhcC
Confidence            999999999999999999986553

>KOG3623|consensus

Probab=99.49  E-value=9e-16  Score=104.31  Aligned_cols=84  Identities=14%  Similarity=0.234  Sum_probs=72.1

Q ss_pred             cccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCC--------CCCCCCeeeCCCCcccccchhhHHHHHhhhCC-Cccc
Q psy11352         10 LHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGS--------SNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYA   80 (107)
Q Consensus        10 ~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~--------~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~   80 (107)
                      +.-|.|..|   ..+|..+..|.+|   +..|...        .....+.|+|.+|||.|..+..|+.|+|+|.| |||.
T Consensus       238 e~nfsC~lC---sytFAyRtQLErh---m~~hkpg~dqa~sltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfe  311 (1007)
T KOG3623|consen  238 EPNFSCMLC---SYTFAYRTQLERH---MQLHKPGGDQAISLTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFE  311 (1007)
T ss_pred             CCCCcchhh---hhhhhhHHHHHHH---HHhhcCCCcccccccchhhhccccccccchhhhhHHHHHhhheeecCCCCcC
Confidence            456889999   9999999999988   6655432        11224679999999999999999999999999 9999


Q ss_pred             CCCCCCcccChHHHHHHHH
Q psy11352         81 CSSCSHVSRSRDALRKHVS   99 (107)
Q Consensus        81 C~~C~~~f~~~~~l~~H~~   99 (107)
                      |+.|+|.|+..+.+..||.
T Consensus       312 CpnCkKRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  312 CPNCKKRFSHSGSYSSHMS  330 (1007)
T ss_pred             CcccccccccCCccccccc
Confidence            9999999999999988875

>KOG3576|consensus

Probab=99.48  E-value=9.5e-15  Score=86.41  Aligned_cols=93  Identities=22%  Similarity=0.403  Sum_probs=81.8

Q ss_pred             CccccCCCC-cccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHh-hhC---
Q psy11352          1 MNFHYKPST-LHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHME-THQ---   75 (107)
Q Consensus         1 ~~~h~~~~~-~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~---   75 (107)
                      ||.|+|-.. ++.|.|..|   ++.|...-.|++|   .++|++.     +||+|..|++.|...-+|..|.+ +|.   
T Consensus       133 lnrh~kch~~vkr~lct~c---gkgfndtfdlkrh---~rthtgv-----rpykc~~c~kaftqrcsleshl~kvhgv~~  201 (267)
T KOG3576|consen  133 LNRHLKCHSDVKRHLCTFC---GKGFNDTFDLKRH---TRTHTGV-----RPYKCSLCEKAFTQRCSLESHLKKVHGVQH  201 (267)
T ss_pred             HHHHhhhccHHHHHHHhhc---cCcccchhhhhhh---hccccCc-----cccchhhhhHHHHhhccHHHHHHHHcCchH
Confidence            467888554 899999999   9999999999999   9999999     99999999999999999999976 342   


Q ss_pred             -------C-CcccCCCCCCcccChHHHHHHHHccCCC
Q psy11352         76 -------N-AFYACSSCSHVSRSRDALRKHVSYRHPH  104 (107)
Q Consensus        76 -------~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~  104 (107)
                             . |-|.|+.||.+-.....+..|++.+|..
T Consensus       202 ~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~  238 (267)
T KOG3576|consen  202 QYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPF  238 (267)
T ss_pred             HHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCC
Confidence                   2 5799999999988999999999987754

>PHA02768 hypothetical protein; Provisional

Probab=99.40  E-value=1.1e-13  Score=65.94  Aligned_cols=44  Identities=18%  Similarity=0.363  Sum_probs=40.6

Q ss_pred             eeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCCcccChHHHH
Q psy11352         51 FATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALR   95 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~~f~~~~~l~   95 (107)
                      .|+|+.||+.|.....|..|+++|+ ++|+|..|++.|.+.+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~-k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN-TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC-CcccCCcccceecccceeE
Confidence            4899999999999999999999999 7999999999999887764

>KOG1074|consensus

Probab=99.26  E-value=9e-13  Score=90.96  Aligned_cols=82  Identities=22%  Similarity=0.375  Sum_probs=75.9

Q ss_pred             cccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCCC-----cccCC--
Q psy11352         10 LHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQNA-----FYACS--   82 (107)
Q Consensus        10 ~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~k-----~~~C~--   82 (107)
                      ..|-.|-.|   .+....++.|+.|   .+.|+++     +||+|.+||+.|.++.+|+.|+.+|..+     ++.|+  
T Consensus       603 TdPNqCiiC---~rVlSC~saLqmH---yrtHtGE-----RPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~  671 (958)
T KOG1074|consen  603 TDPNQCIIC---LRVLSCPSALQMH---YRTHTGE-----RPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPST  671 (958)
T ss_pred             CCccceeee---eecccchhhhhhh---hhcccCc-----CccccccccchhccccchhhcccccccCccccccccCCch
Confidence            457889999   9999999999999   9999999     9999999999999999999999999852     68899  


Q ss_pred             -CCCCcccChHHHHHHHHccCC
Q psy11352         83 -SCSHVSRSRDALRKHVSYRHP  103 (107)
Q Consensus        83 -~C~~~f~~~~~l~~H~~~~H~  103 (107)
                       +|-+.|...-.|..|+++ |.
T Consensus       672 ~ic~~kftn~V~lpQhIri-H~  692 (958)
T KOG1074|consen  672 FICQKKFTNAVTLPQHIRI-HL  692 (958)
T ss_pred             hhhcccccccccccceEEe-ec
Confidence             999999999999999997 66

>KOG3608|consensus

Probab=99.20  E-value=4.9e-12  Score=80.44  Aligned_cols=83  Identities=19%  Similarity=0.318  Sum_probs=40.0

Q ss_pred             cccCCCCCCCCCccCCCCCCCCCCCCCCC-CCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCCCcccCCC--CCCcc
Q psy11352         12 FLISDHCLTSPLSSSIPGSSKTKASGSGT-TGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSS--CSHVS   88 (107)
Q Consensus        12 ~~~C~~C~~~~~~~~~~~~l~~h~~~~~~-~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~--C~~~f   88 (107)
                      -|+|+-|   .+.....++|..|   ++. |..+     ++|+|+.|++.|.+.+.|.+|..+|....|+|+.  |...|
T Consensus       263 ~ykCplC---dmtc~~~ssL~~H---~r~rHs~d-----kpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~  331 (467)
T KOG3608|consen  263 CYKCPLC---DMTCSSASSLTTH---IRYRHSKD-----KPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSV  331 (467)
T ss_pred             ccccccc---ccCCCChHHHHHH---HHhhhccC-----CCccccchhhhhccHHHHHHHHHhccccceecCCCCCcHHH
Confidence            3455555   5555555555544   322 2333     4555555555555555555555555443444544  44444


Q ss_pred             cChHHHHHHHHccCCCC
Q psy11352         89 RSRDALRKHVSYRHPHI  105 (107)
Q Consensus        89 ~~~~~l~~H~~~~H~~e  105 (107)
                      .+...+.+|++.+|.|.
T Consensus       332 r~~~q~~~H~~evhEg~  348 (467)
T KOG3608|consen  332 RTYTQMRRHFLEVHEGN  348 (467)
T ss_pred             HHHHHHHHHHHHhccCC
Confidence            44445555555444443

>KOG1074|consensus

Probab=99.14  E-value=2e-11  Score=84.55  Aligned_cols=55  Identities=31%  Similarity=0.518  Sum_probs=50.8

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPH  104 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~  104 (107)
                      ..+.|.+||+.|.....|..|+++|++ |||.|..|++.|....+|+.||.+|+..
T Consensus       878 n~h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~w~  933 (958)
T KOG1074|consen  878 NAHVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHMWV  933 (958)
T ss_pred             chhhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhcccccc
Confidence            347899999999999999999999999 9999999999999999999999985543

>KOG3608|consensus

Probab=99.07  E-value=6.1e-12  Score=80.02  Aligned_cols=78  Identities=19%  Similarity=0.289  Sum_probs=54.8

Q ss_pred             cccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhh-hCC-CcccCCCCCCccc
Q psy11352         12 FLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMET-HQN-AFYACSSCSHVSR   89 (107)
Q Consensus        12 ~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~-k~~~C~~C~~~f~   89 (107)
                      +|.|..|   .+.|.+...|..|   +..|.       ..|+|+.|+.+....++|..|++. |.. +||+|+.|.+.|.
T Consensus       237 ~fqC~~C---~KrFaTeklL~~H---v~rHv-------n~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~  303 (467)
T KOG3608|consen  237 SFQCAQC---FKRFATEKLLKSH---VVRHV-------NCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCV  303 (467)
T ss_pred             chHHHHH---HHHHhHHHHHHHH---HHHhh-------hcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhc
Confidence            4444444   4444444444444   33333       347888888888888888888875 666 8999999999888


Q ss_pred             ChHHHHHHHHccCC
Q psy11352         90 SRDALRKHVSYRHP  103 (107)
Q Consensus        90 ~~~~l~~H~~~~H~  103 (107)
                      +.+.|.+|..+ |.
T Consensus       304 ~esdL~kH~~~-HS  316 (467)
T KOG3608|consen  304 RESDLAKHVQV-HS  316 (467)
T ss_pred             cHHHHHHHHHh-cc
Confidence            88899998885 65

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=99.04  E-value=1.1e-10  Score=48.04  Aligned_cols=25  Identities=40%  Similarity=0.703  Sum_probs=22.6

Q ss_pred             hHHHHHhhhCC-CcccCCCCCCcccC
Q psy11352         66 NLRVHMETHQN-AFYACSSCSHVSRS   90 (107)
Q Consensus        66 ~l~~H~~~h~~-k~~~C~~C~~~f~~   90 (107)
                      +|..|+++|++ +||.|+.|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            47899999999 99999999999864

...

>KOG3993|consensus

Probab=98.89  E-value=1.8e-10  Score=74.78  Aligned_cols=84  Identities=20%  Similarity=0.222  Sum_probs=59.2

Q ss_pred             ccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhC--------C-C----
Q psy11352         11 HFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQ--------N-A----   77 (107)
Q Consensus        11 ~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--------~-k----   77 (107)
                      .-|+|.-|   -..|...-.|.+|   .-...-.     ..|.|++|+|+|+-..+|..|.++|.        + .    
T Consensus       266 GdyiCqLC---K~kYeD~F~LAQH---rC~RIV~-----vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~  334 (500)
T KOG3993|consen  266 GDYICQLC---KEKYEDAFALAQH---RCPRIVH-----VEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQ  334 (500)
T ss_pred             HHHHHHHH---HHhhhhHHHHhhc---cCCeeEE-----eeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhh
Confidence            34777777   7777777777777   3333333     45778888888887777877777763        1 1    


Q ss_pred             ---------------------cccCCCCCCcccChHHHHHHHHccCCCC
Q psy11352         78 ---------------------FYACSSCSHVSRSRDALRKHVSYRHPHI  105 (107)
Q Consensus        78 ---------------------~~~C~~C~~~f~~~~~l~~H~~~~H~~e  105 (107)
                                           -|.|..|++.|.+...|+.|+.+||..+
T Consensus       335 ~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~  383 (500)
T KOG3993|consen  335 AVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAP  383 (500)
T ss_pred             hhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccc
Confidence                                 2778899999999989999988766543

>PHA00732 hypothetical protein

Probab=98.80  E-value=4.1e-09  Score=54.50  Aligned_cols=45  Identities=24%  Similarity=0.563  Sum_probs=28.0

Q ss_pred             eeeCCCCcccccchhhHHHHHhh-hCCCcccCCCCCCcccChHHHHHHHHc
Q psy11352         51 FATCFVCGKQLSNQYNLRVHMET-HQNAFYACSSCSHVSRSRDALRKHVSY  100 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~~-h~~k~~~C~~C~~~f~~~~~l~~H~~~  100 (107)
                      +|.|+.|++.|.....|..|++. |.  ++.|+.|++.|.   .+..|.++
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~--~~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT--LTKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC--CCccCCCCCEeC---Chhhhhcc
Confidence            35677777777777777777663 43  346777777766   35556543

>PHA00733 hypothetical protein

Probab=98.78  E-value=2.6e-09  Score=60.23  Aligned_cols=59  Identities=22%  Similarity=0.257  Sum_probs=49.0

Q ss_pred             cCCCCcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352          5 YKPSTLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus         5 ~~~~~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      +.....+||.|+.|   ++.|.....|..|   +..+  .     .++.|+.|++.|.....|..|+....+
T Consensus        66 ~~~~~~kPy~C~~C---gk~Fss~s~L~~H---~r~h--~-----~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         66 LTSKAVSPYVCPLC---LMPFSSSVSLKQH---IRYT--E-----HSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             cccCCCCCccCCCC---CCcCCCHHHHHHH---HhcC--C-----cCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            33445789999999   9999999999999   6654  2     458999999999999999999876543

>PHA00616 hypothetical protein

Probab=98.77  E-value=3e-09  Score=48.50  Aligned_cols=33  Identities=12%  Similarity=0.281  Sum_probs=24.0

Q ss_pred             eeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         51 FATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      +|.|..||+.|...+.|..|++.|++ +++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            46777777777777777777777777 7776653

>PHA00616 hypothetical protein

Probab=98.72  E-value=4.4e-09  Score=47.95  Aligned_cols=29  Identities=17%  Similarity=0.432  Sum_probs=25.6

Q ss_pred             cccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         78 FYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      ||+|+.||+.|...++|..|++. |.|++|
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~-~hg~~~   29 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLS-VHKQNK   29 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHH-hcCCCc
Confidence            68999999999999999999996 667664

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.72  E-value=8e-09  Score=70.25  Aligned_cols=64  Identities=14%  Similarity=0.290  Sum_probs=37.4

Q ss_pred             cccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcc
Q psy11352         10 LHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVS   88 (107)
Q Consensus        10 ~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f   88 (107)
                      .+.+.|+.|   +..|. ...+..|   +..+.       +++.|+ ||+.+ ....|..|+.+|.. +++.|+.|++.|
T Consensus       451 ~~H~~C~~C---gk~f~-~s~LekH---~~~~H-------kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v  514 (567)
T PLN03086        451 KNHVHCEKC---GQAFQ-QGEMEKH---MKVFH-------EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMV  514 (567)
T ss_pred             ccCccCCCC---CCccc-hHHHHHH---HHhcC-------CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCcc
Confidence            445667777   66664 3445666   44432       346666 66544 44566666666666 666666666666


Q ss_pred             c
Q psy11352         89 R   89 (107)
Q Consensus        89 ~   89 (107)
                      .
T Consensus       515 ~  515 (567)
T PLN03086        515 Q  515 (567)
T ss_pred             c
Confidence            3

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.69  E-value=1.4e-08  Score=69.08  Aligned_cols=80  Identities=16%  Similarity=0.221  Sum_probs=64.0

Q ss_pred             ccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccc----------hhhHHHHHhhhCCCccc
Q psy11352         11 HFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSN----------QYNLRVHMETHQNAFYA   80 (107)
Q Consensus        11 ~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~----------~~~l~~H~~~h~~k~~~   80 (107)
                      +++.|+ |   +..+ ....|..|   ...+-+.     +++.|..|++.+..          ...|..|..+...+++.
T Consensus       477 kpv~Cp-C---g~~~-~R~~L~~H---~~thCp~-----Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~  543 (567)
T PLN03086        477 EPLQCP-C---GVVL-EKEQMVQH---QASTCPL-----RLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAP  543 (567)
T ss_pred             CCccCC-C---CCCc-chhHHHhh---hhccCCC-----CceeCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceE
Confidence            789999 9   7654 56888889   7778888     99999999998852          34788998886339999


Q ss_pred             CCCCCCcccChHHHHHHHHccCCC
Q psy11352         81 CSSCSHVSRSRDALRKHVSYRHPH  104 (107)
Q Consensus        81 C~~C~~~f~~~~~l~~H~~~~H~~  104 (107)
                      |..||+.|... .|..|+..+|..
T Consensus       544 C~~Cgk~Vrlr-dm~~H~~~~h~~  566 (567)
T PLN03086        544 CDSCGRSVMLK-EMDIHQIAVHQK  566 (567)
T ss_pred             ccccCCeeeeh-hHHHHHHHhhcC
Confidence            99999988765 578888877753

>PHA02768 hypothetical protein; Provisional

Probab=98.56  E-value=3.4e-09  Score=50.61  Aligned_cols=44  Identities=9%  Similarity=-0.182  Sum_probs=38.8

Q ss_pred             cccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHH
Q psy11352         12 FLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLR   68 (107)
Q Consensus        12 ~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~   68 (107)
                      -|.|+.|   ++.|.....|..|   ++.|.       ++++|..|++.|...+.|.
T Consensus         5 ~y~C~~C---GK~Fs~~~~L~~H---~r~H~-------k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPIC---GEIYIKRKSMITH---LRKHN-------TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchh---CCeeccHHHHHHH---HHhcC-------CcccCCcccceecccceeE
Confidence            5899999   9999999999999   98887       3589999999998877654

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.54  E-value=1.7e-07  Score=45.14  Aligned_cols=49  Identities=33%  Similarity=0.539  Sum_probs=38.9

Q ss_pred             eeeCCCCcccccchhhHHHHHhh-hCC--CcccCCCCCCcccChHHHHHHHHccC
Q psy11352         51 FATCFVCGKQLSNQYNLRVHMET-HQN--AFYACSSCSHVSRSRDALRKHVSYRH  102 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~~-h~~--k~~~C~~C~~~f~~~~~l~~H~~~~H  102 (107)
                      .|.|+.|++. .+...|..|... |..  +.+.|++|...+.  .+|..|+...|
T Consensus         2 ~f~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGKG-FSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCCc-cCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            4899999994 556789999765 554  6899999998654  48999998766

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.44  E-value=1.7e-07  Score=37.13  Aligned_cols=21  Identities=29%  Similarity=0.760  Sum_probs=11.3

Q ss_pred             ccCCCCCCcccChHHHHHHHH
Q psy11352         79 YACSSCSHVSRSRDALRKHVS   99 (107)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~   99 (107)
                      |.|+.|++.|.....|..|++
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~   21 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMR   21 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHh
Confidence            345555555555555555554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.35  E-value=3.2e-07  Score=36.47  Aligned_cols=24  Identities=33%  Similarity=0.779  Sum_probs=13.8

Q ss_pred             ccCCCCCCcccChHHHHHHHHccC
Q psy11352         79 YACSSCSHVSRSRDALRKHVSYRH  102 (107)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~~H  102 (107)
                      |.|+.|++.|.....|..|+.++|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            456666666666666666666543

...

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.32  E-value=2.1e-07  Score=36.90  Aligned_cols=23  Identities=43%  Similarity=0.868  Sum_probs=21.4

Q ss_pred             eeCCCCcccccchhhHHHHHhhh
Q psy11352         52 ATCFVCGKQLSNQYNLRVHMETH   74 (107)
Q Consensus        52 ~~C~~C~~~f~~~~~l~~H~~~h   74 (107)
                      |.|+.|++.|.+...|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            68999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.28  E-value=4.4e-07  Score=37.37  Aligned_cols=23  Identities=30%  Similarity=0.551  Sum_probs=15.0

Q ss_pred             cccCCCCCCcccChHHHHHHHHc
Q psy11352         78 FYACSSCSHVSRSRDALRKHVSY  100 (107)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~  100 (107)
                      ||.|..|++.|....+|..|++.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~   23 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRS   23 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCT
T ss_pred             CCCCCccCCccCChhHHHHHhHH
Confidence            45666666666666666666664

>PHA00732 hypothetical protein

Probab=98.18  E-value=3.9e-07  Score=47.17  Aligned_cols=48  Identities=17%  Similarity=0.276  Sum_probs=38.8

Q ss_pred             cccCCCCCCCCCccCCCCCCCCCCCCCCC-CCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         12 FLISDHCLTSPLSSSIPGSSKTKASGSGT-TGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        12 ~~~C~~C~~~~~~~~~~~~l~~h~~~~~~-~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ||.|+.|   ++.|.....|..|   +.. +.+        +.|+.|++.|.   .+..|......
T Consensus         1 py~C~~C---gk~F~s~s~Lk~H---~r~~H~~--------~~C~~CgKsF~---~l~~H~~~~~~   49 (79)
T PHA00732          1 MFKCPIC---GFTTVTLFALKQH---ARRNHTL--------TKCPVCNKSYR---RLNQHFYSQYD   49 (79)
T ss_pred             CccCCCC---CCccCCHHHHHHH---hhcccCC--------CccCCCCCEeC---ChhhhhcccCC
Confidence            6899999   9999999999999   763 432        47999999998   47788865554

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.08  E-value=2.7e-06  Score=34.95  Aligned_cols=25  Identities=36%  Similarity=0.513  Sum_probs=22.8

Q ss_pred             eeeCCCCcccccchhhHHHHHhhhC
Q psy11352         51 FATCFVCGKQLSNQYNLRVHMETHQ   75 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~~h~   75 (107)
                      +|.|+.|++.|.+...|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            5899999999999999999998765

>KOG3993|consensus

Probab=98.07  E-value=2.1e-06  Score=56.40  Aligned_cols=59  Identities=25%  Similarity=0.295  Sum_probs=47.3

Q ss_pred             ccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCC------------C----------------CCCCeeeCCCCccccc
Q psy11352         11 HFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSS------------N----------------HSKLFATCFVCGKQLS   62 (107)
Q Consensus        11 ~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~------------~----------------~~~~~~~C~~C~~~f~   62 (107)
                      --|+|++|   ++.|..+.+|..|   .+.|...+            .                ...-.|.|..|++.|.
T Consensus       294 vEYrCPEC---~KVFsCPANLASH---RRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFr  367 (500)
T KOG3993|consen  294 VEYRCPEC---DKVFSCPANLASH---RRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFR  367 (500)
T ss_pred             eeecCCcc---cccccCchhhhhh---hcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhH
Confidence            36999999   9999999999998   66653210            0                1123699999999999


Q ss_pred             chhhHHHHHhhhC
Q psy11352         63 NQYNLRVHMETHQ   75 (107)
Q Consensus        63 ~~~~l~~H~~~h~   75 (107)
                      +...|+.|+.+|.
T Consensus       368 RqAYLrKHqlthq  380 (500)
T KOG3993|consen  368 RQAYLRKHQLTHQ  380 (500)
T ss_pred             HHHHHHHhHHhhh
Confidence            9999999988775

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.04  E-value=6e-06  Score=32.63  Aligned_cols=23  Identities=43%  Similarity=0.863  Sum_probs=19.4

Q ss_pred             eeCCCCcccccchhhHHHHHhhh
Q psy11352         52 ATCFVCGKQLSNQYNLRVHMETH   74 (107)
Q Consensus        52 ~~C~~C~~~f~~~~~l~~H~~~h   74 (107)
                      |.|+.|++.|.+...|..|+..|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            68999999999999999999876

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.00  E-value=9.8e-08  Score=39.07  Aligned_cols=20  Identities=35%  Similarity=0.497  Sum_probs=15.3

Q ss_pred             CCCCCCCCCCCCCeeeCCCCccccc
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLS   62 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~   62 (107)
                      ++.|.++     ++|.|+.|++.|.
T Consensus         6 ~~~H~~~-----k~~~C~~C~k~F~   25 (26)
T PF13465_consen    6 MRTHTGE-----KPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHSSS-----SSEEESSSSEEES
T ss_pred             hhhcCCC-----CCCCCCCCcCeeC
Confidence            5667777     8888888888775

...

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.83  E-value=5e-06  Score=52.99  Aligned_cols=51  Identities=27%  Similarity=0.472  Sum_probs=41.9

Q ss_pred             CCeeeCC--CCcccccchhhHHHHHhh-h------------------CC-CcccCCCCCCcccChHHHHHHHH
Q psy11352         49 KLFATCF--VCGKQLSNQYNLRVHMET-H------------------QN-AFYACSSCSHVSRSRDALRKHVS   99 (107)
Q Consensus        49 ~~~~~C~--~C~~~f~~~~~l~~H~~~-h------------------~~-k~~~C~~C~~~f~~~~~l~~H~~   99 (107)
                      .+||+|+  .|.|.|.+...|+.|+.- |                  .. |||.|++|+|.+.....|+-|..
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            4899995  499999999889888752 2                  13 79999999999999999988875

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.78  E-value=4.6e-05  Score=35.69  Aligned_cols=29  Identities=34%  Similarity=0.518  Sum_probs=15.3

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-Cc
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AF   78 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~   78 (107)
                      .|..|++|+..+..+.+|.+|+.+..+ ||
T Consensus        23 ~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   23 QPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             --EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             CCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            566677777777777777777665554 44

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.73  E-value=2.3e-05  Score=41.94  Aligned_cols=72  Identities=21%  Similarity=0.230  Sum_probs=16.4

Q ss_pred             cCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCCcccChHH
Q psy11352         14 ISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDA   93 (107)
Q Consensus        14 ~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~~f~~~~~   93 (107)
                      +|..|   +..|.....+..|   +....+..    .+     ....+.....+..+...-....+.|..|++.|.....
T Consensus         1 ~C~~C---~~~f~~~~~l~~H---~~~~H~~~----~~-----~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~   65 (100)
T PF12756_consen    1 QCLFC---DESFSSVDDLLQH---MKKKHGFD----IP-----DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREA   65 (100)
T ss_dssp             ---------------------------------------------------------------SSEEBSSSS-EESSHHH
T ss_pred             Ccccc---ccccccccccccc---cccccccc----cc-----cccccccccccccccccccCCCCCCCccCCCCcCHHH
Confidence            48889   9999999999888   53322210    00     0001111222222222211235777777777777777


Q ss_pred             HHHHHHc
Q psy11352         94 LRKHVSY  100 (107)
Q Consensus        94 l~~H~~~  100 (107)
                      |..|++.
T Consensus        66 l~~Hm~~   72 (100)
T PF12756_consen   66 LQEHMRS   72 (100)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcC
Confidence            7777774

>smart00355 ZnF_C2H2 zinc finger

Probab=97.72  E-value=4.1e-05  Score=30.56  Aligned_cols=21  Identities=38%  Similarity=0.923  Sum_probs=13.9

Q ss_pred             ccCCCCCCcccChHHHHHHHH
Q psy11352         79 YACSSCSHVSRSRDALRKHVS   99 (107)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~   99 (107)
                      |.|..|++.|.....|..|++
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH
Confidence            456666666666666666666

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.72  E-value=1.4e-05  Score=51.08  Aligned_cols=59  Identities=15%  Similarity=0.067  Sum_probs=42.7

Q ss_pred             cccccCCC--CCCCCCccCCCCCCCCCCCCC----CCCC---CC----CCCCCCeeeCCCCcccccchhhHHHHH
Q psy11352         10 LHFLISDH--CLTSPLSSSIPGSSKTKASGS----GTTG---GS----SNHSKLFATCFVCGKQLSNQYNLRVHM   71 (107)
Q Consensus        10 ~~~~~C~~--C~~~~~~~~~~~~l~~h~~~~----~~~~---~~----~~~~~~~~~C~~C~~~f~~~~~l~~H~   71 (107)
                      .|||+|++  |   .+.++....|+.|....    ..+.   .+    =+...+||.|++|+|.|.+...|+.|.
T Consensus       347 ~KpykCpV~gC---~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr  418 (423)
T COG5189         347 GKPYKCPVEGC---NKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHR  418 (423)
T ss_pred             CceecCCCCCc---hhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecc
Confidence            48999976  9   99999999999883110    0111   01    113358999999999999988888775

>smart00355 ZnF_C2H2 zinc finger

Probab=97.70  E-value=3.2e-05  Score=30.89  Aligned_cols=24  Identities=38%  Similarity=0.688  Sum_probs=21.3

Q ss_pred             eeCCCCcccccchhhHHHHHhhhC
Q psy11352         52 ATCFVCGKQLSNQYNLRVHMETHQ   75 (107)
Q Consensus        52 ~~C~~C~~~f~~~~~l~~H~~~h~   75 (107)
                      |.|+.|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            579999999999999999998764

>PRK04860 hypothetical protein; Provisional

Probab=97.70  E-value=2.6e-05  Score=45.62  Aligned_cols=38  Identities=24%  Similarity=0.506  Sum_probs=32.9

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccCh
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSR   91 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~   91 (107)
                      -+|.|. |+.   ....+.+|.++|++ ++|.|..|+..|...
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            569998 987   56778999999999 999999999988654

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.60  E-value=3.4e-05  Score=36.10  Aligned_cols=27  Identities=33%  Similarity=0.580  Sum_probs=20.0

Q ss_pred             CcccCCCCCCcccChHHHHHHHHccCC
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSYRHP  103 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~~H~  103 (107)
                      .|-.|++|+..+.+..+|.+|+.+.|.
T Consensus        23 ~PatCP~C~a~~~~srnLrRHle~~H~   49 (54)
T PF09237_consen   23 QPATCPICGAVIRQSRNLRRHLEIRHF   49 (54)
T ss_dssp             --EE-TTT--EESSHHHHHHHHHHHTT
T ss_pred             CCCCCCcchhhccchhhHHHHHHHHhc
Confidence            799999999999999999999987553

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.50  E-value=5.4e-05  Score=30.08  Aligned_cols=23  Identities=30%  Similarity=0.810  Sum_probs=12.6

Q ss_pred             ccCCCCCCcccChHHHHHHHHccC
Q psy11352         79 YACSSCSHVSRSRDALRKHVSYRH  102 (107)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~~H  102 (107)
                      |+|+.|+.... ...|.+|++++|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            45666666555 666666666544

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.45  E-value=2e-05  Score=37.87  Aligned_cols=52  Identities=13%  Similarity=0.226  Sum_probs=35.0

Q ss_pred             cccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhC
Q psy11352         12 FLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQ   75 (107)
Q Consensus        12 ~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   75 (107)
                      .|.||.|   ++. .+...|..|...  .|..+    .+.+.|++|...+.  ..|..|+..+.
T Consensus         2 ~f~CP~C---~~~-~~~~~L~~H~~~--~H~~~----~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYC---GKG-FSESSLVEHCED--EHRSE----SKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCC---CCc-cCHHHHHHHHHh--HCcCC----CCCccCCCchhhhh--hHHHHHHHHhc
Confidence            4899999   884 445678888322  23322    14689999998654  48889987643

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.37  E-value=0.00015  Score=28.97  Aligned_cols=20  Identities=35%  Similarity=0.770  Sum_probs=9.7

Q ss_pred             eCCCCcccccchhhHHHHHh
Q psy11352         53 TCFVCGKQLSNQYNLRVHME   72 (107)
Q Consensus        53 ~C~~C~~~f~~~~~l~~H~~   72 (107)
                      .|+.|++.|.+...|..|++
T Consensus         2 ~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    2 YCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCcCCHHHHHHHHC
Confidence            44445555555444444443

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.26  E-value=0.00016  Score=28.89  Aligned_cols=22  Identities=27%  Similarity=0.665  Sum_probs=20.2

Q ss_pred             ccCCCCCCcccChHHHHHHHHc
Q psy11352         79 YACSSCSHVSRSRDALRKHVSY  100 (107)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~  100 (107)
                      |.|.+|++.|.....+..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            6799999999999999999874

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.22  E-value=0.00016  Score=29.58  Aligned_cols=22  Identities=23%  Similarity=0.653  Sum_probs=16.2

Q ss_pred             ccCCCCCCcccChHHHHHHHHc
Q psy11352         79 YACSSCSHVSRSRDALRKHVSY  100 (107)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~  100 (107)
                      |.|..|++.|.....+..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            5677788778777777777653

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.85  E-value=0.0012  Score=26.01  Aligned_cols=23  Identities=30%  Similarity=0.574  Sum_probs=17.8

Q ss_pred             eeCCCCcccccchhhHHHHHhhhC
Q psy11352         52 ATCFVCGKQLSNQYNLRVHMETHQ   75 (107)
Q Consensus        52 ~~C~~C~~~f~~~~~l~~H~~~h~   75 (107)
                      |.|+.|+.... ...|..|++.+.
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            68999999888 889999998753

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.78  E-value=0.00045  Score=28.20  Aligned_cols=22  Identities=32%  Similarity=0.611  Sum_probs=18.9

Q ss_pred             eeCCCCcccccchhhHHHHHhh
Q psy11352         52 ATCFVCGKQLSNQYNLRVHMET   73 (107)
Q Consensus        52 ~~C~~C~~~f~~~~~l~~H~~~   73 (107)
                      |.|..|++.|.+...+..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6799999999999999888764

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=96.59  E-value=0.0024  Score=25.61  Aligned_cols=19  Identities=32%  Similarity=0.602  Sum_probs=10.3

Q ss_pred             cCCCCCCcccChHHHHHHHH
Q psy11352         80 ACSSCSHVSRSRDALRKHVS   99 (107)
Q Consensus        80 ~C~~C~~~f~~~~~l~~H~~   99 (107)
                      .|+.||+.| ..+.|..|+.
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHH
Confidence            455666666 3444555554

>smart00451 ZnF_U1 U1-like zinc finger

Probab=96.38  E-value=0.0032  Score=27.06  Aligned_cols=22  Identities=14%  Similarity=0.342  Sum_probs=14.2

Q ss_pred             cccCCCCCCcccChHHHHHHHH
Q psy11352         78 FYACSSCSHVSRSRDALRKHVS   99 (107)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~   99 (107)
                      +|.|++|++.|.....+..|+.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            4567777777766666666654

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=95.84  E-value=0.0085  Score=25.70  Aligned_cols=22  Identities=14%  Similarity=0.466  Sum_probs=19.5

Q ss_pred             eeeCCCCcccccchhhHHHHHh
Q psy11352         51 FATCFVCGKQLSNQYNLRVHME   72 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~   72 (107)
                      +|.|+.|+..|.....+..|+.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            4889999999999999988875

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PRK04860 hypothetical protein; Provisional

Probab=95.61  E-value=0.0021  Score=37.75  Aligned_cols=40  Identities=15%  Similarity=0.231  Sum_probs=32.5

Q ss_pred             cccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccch
Q psy11352         10 LHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQ   64 (107)
Q Consensus        10 ~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~   64 (107)
                      .-+|.|. |   +.   ....+..|   .+++.+.     ++|.|..|+..|...
T Consensus       117 ~~~Y~C~-C---~~---~~~~~rrH---~ri~~g~-----~~YrC~~C~~~l~~~  156 (160)
T PRK04860        117 TFPYRCK-C---QE---HQLTVRRH---NRVVRGE-----AVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEEEcC-C---CC---eeCHHHHH---HHHhcCC-----ccEECCCCCceeEEe
Confidence            3579998 9   65   56667888   8888888     999999999988654

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=95.55  E-value=0.012  Score=25.13  Aligned_cols=24  Identities=29%  Similarity=0.663  Sum_probs=15.8

Q ss_pred             eeCCCCcccccchhhHHHHHhhhCCCcccCCCCCC
Q psy11352         52 ATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSH   86 (107)
Q Consensus        52 ~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~   86 (107)
                      |.|..||..+....           .++.|+.||.
T Consensus         2 ~~C~~CGy~y~~~~-----------~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGEE-----------APWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCCc-----------CCCcCcCCCC
Confidence            67777876654322           4778888874

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG2186|consensus

Probab=95.11  E-value=0.017  Score=36.17  Aligned_cols=25  Identities=20%  Similarity=0.571  Sum_probs=13.8

Q ss_pred             eeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         51 FATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      .|.|..|++.|.. .++..|...-++
T Consensus        29 ~fSCIDC~k~F~~-~sYknH~kCITE   53 (276)
T KOG2186|consen   29 YFSCIDCGKTFER-VSYKNHTKCITE   53 (276)
T ss_pred             eeEEeeccccccc-chhhhhhhhcch
Confidence            4666666666665 445555544443

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=94.68  E-value=0.05  Score=26.41  Aligned_cols=33  Identities=18%  Similarity=0.365  Sum_probs=22.3

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSH   86 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~   86 (107)
                      ..|.|+.||..-.....    .-.-.+.+|.|+.||.
T Consensus        26 v~F~CPnCGe~~I~Rc~----~CRk~g~~Y~Cp~CGF   58 (61)
T COG2888          26 VKFPCPNCGEVEIYRCA----KCRKLGNPYRCPKCGF   58 (61)
T ss_pred             eEeeCCCCCceeeehhh----hHHHcCCceECCCcCc
Confidence            67999999976544322    1122347999999984

>KOG1146|consensus

Probab=94.59  E-value=0.023  Score=43.01  Aligned_cols=51  Identities=24%  Similarity=0.415  Sum_probs=43.9

Q ss_pred             CeeeCCCCcccccchhhHHHHHhh-h------------------------CC-CcccCCCCCCcccChHHHHHHHHc
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMET-H------------------------QN-AFYACSSCSHVSRSRDALRKHVSY  100 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~-h------------------------~~-k~~~C~~C~~~f~~~~~l~~H~~~  100 (107)
                      +.+.|+.|+..|.....|-.|++. |                        .+ +||.|..|...++...+|..|+..
T Consensus       464 kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS  540 (1406)
T KOG1146|consen  464 KTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQS  540 (1406)
T ss_pred             ccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHHH
Confidence            678999999999999999999887 1                        12 589999999999999999999874

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=94.58  E-value=0.041  Score=29.11  Aligned_cols=25  Identities=24%  Similarity=0.470  Sum_probs=21.7

Q ss_pred             eeeCCCCcccccchhhHHHHHhhhC
Q psy11352         51 FATCFVCGKQLSNQYNLRVHMETHQ   75 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~~h~   75 (107)
                      .+.|..|++.|.+...|..|++.+.
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~   74 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKH   74 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCcc
Confidence            5999999999999999999998643

>KOG2893|consensus

Probab=94.58  E-value=0.0071  Score=37.63  Aligned_cols=41  Identities=22%  Similarity=0.537  Sum_probs=27.6

Q ss_pred             CCCCcccccchhhHHHHHhhhCCCcccCCCCCCcccChHHHHHH
Q psy11352         54 CFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKH   97 (107)
Q Consensus        54 C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~~f~~~~~l~~H   97 (107)
                      |..|++.|.....|.+|++.   |-|+|.+|.+...+...|..|
T Consensus        13 cwycnrefddekiliqhqka---khfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQKA---KHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeecccccchhhhhhhhhhh---ccceeeeehhhhccCCCceee
Confidence            77788888888888777642   667888887654444444333

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=94.03  E-value=0.037  Score=26.48  Aligned_cols=25  Identities=20%  Similarity=0.412  Sum_probs=22.0

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhh
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETH   74 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h   74 (107)
                      .-+.|+.||..|.....+.+|+..-
T Consensus        16 ~~lrCPRC~~~FR~~K~Y~RHVNKa   40 (65)
T COG4049          16 EFLRCPRCGMVFRRRKDYIRHVNKA   40 (65)
T ss_pred             eeeeCCchhHHHHHhHHHHHHhhHH
Confidence            7889999999999999999998643

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=94.01  E-value=0.066  Score=29.45  Aligned_cols=31  Identities=19%  Similarity=0.417  Sum_probs=21.6

Q ss_pred             eeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCCcccCh
Q psy11352         51 FATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSR   91 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~~f~~~   91 (107)
                      ...|+.||..|....          ..|..|+.||..|.-.
T Consensus         9 KR~Cp~CG~kFYDLn----------k~PivCP~CG~~~~~~   39 (108)
T PF09538_consen    9 KRTCPSCGAKFYDLN----------KDPIVCPKCGTEFPPE   39 (108)
T ss_pred             cccCCCCcchhccCC----------CCCccCCCCCCccCcc
Confidence            357888888876521          1588888888877655

The function of members of this family is unknown.

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=93.97  E-value=0.064  Score=23.09  Aligned_cols=25  Identities=28%  Similarity=0.482  Sum_probs=15.8

Q ss_pred             eeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCC
Q psy11352         51 FATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSH   86 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~   86 (107)
                      .|.|..||..+....           .|..|+.||.
T Consensus         2 ~~~C~~CG~i~~g~~-----------~p~~CP~Cg~   26 (34)
T cd00729           2 VWVCPVCGYIHEGEE-----------APEKCPICGA   26 (34)
T ss_pred             eEECCCCCCEeECCc-----------CCCcCcCCCC
Confidence            467888876643321           4677888874

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG4173|consensus

Probab=93.84  E-value=0.011  Score=35.93  Aligned_cols=80  Identities=16%  Similarity=0.326  Sum_probs=55.9

Q ss_pred             cccccCCC--CCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHh-hh---------CC-
Q psy11352         10 LHFLISDH--CLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHME-TH---------QN-   76 (107)
Q Consensus        10 ~~~~~C~~--C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h---------~~-   76 (107)
                      +..|.|+.  |   ...|........|   .....+        ..|..|.+.|.+...|..|+. .|         .| 
T Consensus        77 ~~~~~cqvagc---~~~~d~lD~~E~h---Y~~~h~--------~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~  142 (253)
T KOG4173|consen   77 VPAFACQVAGC---CQVFDALDDYEHH---YHTLHG--------NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQ  142 (253)
T ss_pred             cccccccccch---HHHHhhhhhHHHh---hhhccc--------chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCc
Confidence            44567766  5   5556655555555   322222        279999999999999998874 33         34 


Q ss_pred             CcccC--CCCCCcccChHHHHHHHHccCC
Q psy11352         77 AFYAC--SSCSHVSRSRDALRKHVSYRHP  103 (107)
Q Consensus        77 k~~~C--~~C~~~f~~~~~l~~H~~~~H~  103 (107)
                      --|+|  +.|+..|........|+-..|.
T Consensus       143 dMy~ClvEgCt~KFkT~r~RkdH~I~~Hk  171 (253)
T KOG4173|consen  143 DMYQCLVEGCTEKFKTSRDRKDHMIRMHK  171 (253)
T ss_pred             cHHHHHHHhhhhhhhhhhhhhhHHHHhcc
Confidence            35888  5699999999888999876563

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=93.66  E-value=0.058  Score=31.56  Aligned_cols=17  Identities=24%  Similarity=0.653  Sum_probs=13.2

Q ss_pred             eeeCCCCcccccchhhH
Q psy11352         51 FATCFVCGKQLSNQYNL   67 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l   67 (107)
                      .+.|+.||++|..-..+
T Consensus        28 ~~~c~~c~~~f~~~e~~   44 (154)
T PRK00464         28 RRECLACGKRFTTFERV   44 (154)
T ss_pred             eeeccccCCcceEeEec
Confidence            48999999999875443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=93.25  E-value=0.028  Score=34.66  Aligned_cols=13  Identities=15%  Similarity=0.621  Sum_probs=9.0

Q ss_pred             ccCCCCCCcccCh
Q psy11352         79 YACSSCSHVSRSR   91 (107)
Q Consensus        79 ~~C~~C~~~f~~~   91 (107)
                      ..|+.||.+|...
T Consensus        49 ~vCP~CgyA~~~~   61 (214)
T PF09986_consen   49 WVCPHCGYAAFEE   61 (214)
T ss_pred             EECCCCCCccccc
Confidence            5788888776543

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=93.16  E-value=0.025  Score=37.46  Aligned_cols=53  Identities=23%  Similarity=0.462  Sum_probs=32.8

Q ss_pred             eeeCCCCcccccchhhHHHHHh--hhCC---CcccCC--CCCCcccChHHHHHHHHccCCC
Q psy11352         51 FATCFVCGKQLSNQYNLRVHME--THQN---AFYACS--SCSHVSRSRDALRKHVSYRHPH  104 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~--~h~~---k~~~C~--~C~~~f~~~~~l~~H~~~~H~~  104 (107)
                      ++.|..|...|.....|..|.+  .|.+   +++.|+  .|++.|.+...+..|..+ |.+
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~  348 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILL-HTS  348 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCccc-ccC
Confidence            4566666666666666666666  5553   366666  566666666666666664 444

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=93.02  E-value=0.11  Score=34.47  Aligned_cols=64  Identities=22%  Similarity=0.240  Sum_probs=52.4

Q ss_pred             ccccCCCCCCCCCccCCCCCCCCCCCCCC--CCCCCCCCCCCeeeCC--CCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         11 HFLISDHCLTSPLSSSIPGSSKTKASGSG--TTGGSSNHSKLFATCF--VCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        11 ~~~~C~~C~~~~~~~~~~~~l~~h~~~~~--~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      .++.|..|   ...|.....+..|   ..  .+.++.   .+++.|+  .|++.|.+...+..|...|.+ .++.+..
T Consensus       288 ~~~~~~~~---~~~~s~~~~l~~~---~~~~~h~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (467)
T COG5048         288 LPIKSKQC---NISFSRSSPLTRH---LRSVNHSGES---LKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKL  356 (467)
T ss_pred             cCCCCccc---cCCcccccccccc---cccccccccc---CCceeeeccCCCccccccccccCCcccccCCCcccccc
Confidence            47899999   9999999999999   66  454442   3689998  899999999999999999998 6666643

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=92.03  E-value=0.21  Score=33.01  Aligned_cols=92  Identities=16%  Similarity=0.261  Sum_probs=52.4

Q ss_pred             ccccCCCCcccccCCCCCCCCCccC------CCCCCCCCCCCCCCCCCCCCCCCC-eeeCCCCcccccchhhHHHHHhhh
Q psy11352          2 NFHYKPSTLHFLISDHCLTSPLSSS------IPGSSKTKASGSGTTGGSSNHSKL-FATCFVCGKQLSNQYNLRVHMETH   74 (107)
Q Consensus         2 ~~h~~~~~~~~~~C~~C~~~~~~~~------~~~~l~~h~~~~~~~~~~~~~~~~-~~~C~~C~~~f~~~~~l~~H~~~h   74 (107)
                      +.|+|.... .+.|..|-+.-+.|.      ....|..|   ......+  .+=+ .-.|..|..-|..-..|..|++.-
T Consensus       170 k~H~K~~H~-~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H---~~~G~~e--~GFKGHP~C~FC~~~FYdDDEL~~HcR~~  243 (493)
T COG5236         170 KKHYKAQHG-FVLCSECIGNKKDFWNEIRLFRSSTLRDH---KNGGLEE--EGFKGHPLCIFCKIYFYDDDELRRHCRLR  243 (493)
T ss_pred             HHHHHhhcC-cEEhHhhhcCcccCccceeeeeccccccc---ccCCccc--cCcCCCchhhhccceecChHHHHHHHHhh
Confidence            445554443 456777744344443      33445555   2222111  1102 235999999999999999999875


Q ss_pred             CCCcccCCCCCC----cccChHHHHHHHH
Q psy11352         75 QNAFYACSSCSH----VSRSRDALRKHVS   99 (107)
Q Consensus        75 ~~k~~~C~~C~~----~f~~~~~l~~H~~   99 (107)
                      .++-+.|+.-+.    -|..-.+|-+|.+
T Consensus       244 HE~ChICD~v~p~~~QYFK~Y~~Le~HF~  272 (493)
T COG5236         244 HEACHICDMVGPIRYQYFKSYEDLEAHFR  272 (493)
T ss_pred             hhhhhhhhccCccchhhhhCHHHHHHHhh
Confidence            555555544332    2556666777765

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=91.89  E-value=0.078  Score=24.93  Aligned_cols=12  Identities=25%  Similarity=0.755  Sum_probs=6.9

Q ss_pred             eeCCCCcccccc
Q psy11352         52 ATCFVCGKQLSN   63 (107)
Q Consensus        52 ~~C~~C~~~f~~   63 (107)
                      |.|..||..|..
T Consensus         6 y~C~~Cg~~fe~   17 (52)
T TIGR02605         6 YRCTACGHRFEV   17 (52)
T ss_pred             EEeCCCCCEeEE
Confidence            556666665553

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>smart00614 ZnF_BED BED zinc finger

Probab=91.76  E-value=0.18  Score=23.60  Aligned_cols=8  Identities=38%  Similarity=0.800  Sum_probs=4.1

Q ss_pred             HHHHHHHH
Q psy11352         92 DALRKHVS   99 (107)
Q Consensus        92 ~~l~~H~~   99 (107)
                      ++|.+|++
T Consensus        37 s~L~rHl~   44 (50)
T smart00614       37 SNLRRHLR   44 (50)
T ss_pred             HHHHHHHH
Confidence            34555555

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=91.74  E-value=0.19  Score=21.95  Aligned_cols=33  Identities=18%  Similarity=0.307  Sum_probs=15.7

Q ss_pred             eeCCCCcccccchhhHHHHHhhhCCCcccCCCCCCcc
Q psy11352         52 ATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVS   88 (107)
Q Consensus        52 ~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~~f   88 (107)
                      ..|+.|+..|.-......    ..+....|+.|+..|
T Consensus         3 ~~CP~C~~~~~v~~~~~~----~~~~~v~C~~C~~~~   35 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQLG----ANGGKVRCGKCGHVW   35 (38)
T ss_pred             EECCCCCCEEEeCHHHcC----CCCCEEECCCCCCEE
Confidence            456666666554432210    011245666666554

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=91.68  E-value=0.09  Score=23.27  Aligned_cols=30  Identities=17%  Similarity=0.485  Sum_probs=15.4

Q ss_pred             eeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCC
Q psy11352         51 FATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSH   86 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~   86 (107)
                      .|.|..||..|.......      .+....|+.||.
T Consensus         5 ~y~C~~Cg~~fe~~~~~~------~~~~~~CP~Cg~   34 (41)
T smart00834        5 EYRCEDCGHTFEVLQKIS------DDPLATCPECGG   34 (41)
T ss_pred             EEEcCCCCCEEEEEEecC------CCCCCCCCCCCC
Confidence            366777776665433221      123445666664

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=91.47  E-value=0.2  Score=22.88  Aligned_cols=27  Identities=19%  Similarity=0.486  Sum_probs=16.5

Q ss_pred             eeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCCc
Q psy11352         51 FATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHV   87 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~~   87 (107)
                      .|.|..||..|...          .+.+..|+.||..
T Consensus         2 ~Y~C~~Cg~~~~~~----------~~~~irC~~CG~r   28 (44)
T smart00659        2 IYICGECGRENEIK----------SKDVVRCRECGYR   28 (44)
T ss_pred             EEECCCCCCEeecC----------CCCceECCCCCce
Confidence            36777777766543          1146677777743

present in RNA polymerase I, II and III

>PHA00626 hypothetical protein

Probab=91.47  E-value=0.22  Score=23.92  Aligned_cols=14  Identities=29%  Similarity=0.306  Sum_probs=10.4

Q ss_pred             CeeeCCCCcccccc
Q psy11352         50 LFATCFVCGKQLSN   63 (107)
Q Consensus        50 ~~~~C~~C~~~f~~   63 (107)
                      ..|.|..||..|..
T Consensus        22 nrYkCkdCGY~ft~   35 (59)
T PHA00626         22 DDYVCCDCGYNDSK   35 (59)
T ss_pred             cceEcCCCCCeech
Confidence            55888888877764

>TIGR00622 ssl1 transcription factor ssl1

Probab=91.47  E-value=0.23  Score=27.50  Aligned_cols=85  Identities=13%  Similarity=0.106  Sum_probs=47.6

Q ss_pred             ccccCCCCCCCCCccCCCCCCCCCCCCCCCCC--CC-C-CCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCC
Q psy11352         11 HFLISDHCLTSPLSSSIPGSSKTKASGSGTTG--GS-S-NHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCS   85 (107)
Q Consensus        11 ~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~--~~-~-~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~   85 (107)
                      -|-.|+.|   +.....+..|.+...-.-.-.  .+ + ......-.|-.|...|........  ..-.. ..|+|+.|.
T Consensus        14 LP~~CpiC---gLtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~--~~~~~~~~y~C~~C~   88 (112)
T TIGR00622        14 LPVECPIC---GLTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPF--DELKDSHRYVCAVCK   88 (112)
T ss_pred             CCCcCCcC---CCEEeccchHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCcccccc--cccccccceeCCCCC
Confidence            47789999   777666665553310000000  00 0 001112348889888876431110  00112 589999999


Q ss_pred             CcccChHHHHHHHHc
Q psy11352         86 HVSRSRDALRKHVSY  100 (107)
Q Consensus        86 ~~f~~~~~l~~H~~~  100 (107)
                      ..|-..-++-.|...
T Consensus        89 ~~FC~dCD~fiHe~L  103 (112)
T TIGR00622        89 NVFCVDCDVFVHESL  103 (112)
T ss_pred             Cccccccchhhhhhc
Confidence            999888888788774

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=91.33  E-value=0.14  Score=22.40  Aligned_cols=10  Identities=30%  Similarity=0.836  Sum_probs=4.8

Q ss_pred             eeCCCCcccc
Q psy11352         52 ATCFVCGKQL   61 (107)
Q Consensus        52 ~~C~~C~~~f   61 (107)
                      ..|..|+-.|
T Consensus        26 vrC~~C~~~f   35 (37)
T PF13719_consen   26 VRCPKCGHVF   35 (37)
T ss_pred             EECCCCCcEe
Confidence            4455554444

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=90.71  E-value=0.22  Score=29.56  Aligned_cols=25  Identities=28%  Similarity=0.511  Sum_probs=17.7

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSH   86 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~   86 (107)
                      +.|.|++||.++..            ..|-+|++||-
T Consensus       133 ~~~vC~vCGy~~~g------------e~P~~CPiCga  157 (166)
T COG1592         133 KVWVCPVCGYTHEG------------EAPEVCPICGA  157 (166)
T ss_pred             CEEEcCCCCCcccC------------CCCCcCCCCCC
Confidence            36889999865432            16888999983

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=90.39  E-value=0.18  Score=23.09  Aligned_cols=11  Identities=27%  Similarity=0.773  Sum_probs=5.5

Q ss_pred             eeeCCCCcccc
Q psy11352         51 FATCFVCGKQL   61 (107)
Q Consensus        51 ~~~C~~C~~~f   61 (107)
                      .|.|+.||..|
T Consensus         3 ~y~C~~CG~~~   13 (46)
T PRK00398          3 EYKCARCGREV   13 (46)
T ss_pred             EEECCCCCCEE
Confidence            34555555544

>smart00531 TFIIE Transcription initiation factor IIE

Probab=90.09  E-value=0.38  Score=27.88  Aligned_cols=37  Identities=11%  Similarity=0.382  Sum_probs=23.6

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCCccc
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSR   89 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~~f~   89 (107)
                      ..|.|+.|+..|.....+.. .  .....|.|+.||....
T Consensus        98 ~~Y~Cp~C~~~y~~~ea~~~-~--d~~~~f~Cp~Cg~~l~  134 (147)
T smart00531       98 AYYKCPNCQSKYTFLEANQL-L--DMDGTFTCPRCGEELE  134 (147)
T ss_pred             cEEECcCCCCEeeHHHHHHh-c--CCCCcEECCCCCCEEE
Confidence            67899999988875443221 0  1123489999987643

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=90.05  E-value=0.28  Score=21.33  Aligned_cols=13  Identities=23%  Similarity=0.388  Sum_probs=6.0

Q ss_pred             eCCCCcccccchh
Q psy11352         53 TCFVCGKQLSNQY   65 (107)
Q Consensus        53 ~C~~C~~~f~~~~   65 (107)
                      .|+.|+..|.-..
T Consensus         4 ~Cp~C~~~y~i~d   16 (36)
T PF13717_consen    4 TCPNCQAKYEIDD   16 (36)
T ss_pred             ECCCCCCEEeCCH
Confidence            4445554444443

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=89.69  E-value=0.4  Score=28.19  Aligned_cols=32  Identities=13%  Similarity=0.367  Sum_probs=24.3

Q ss_pred             CCeeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCCcc
Q psy11352         49 KLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVS   88 (107)
Q Consensus        49 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~~f   88 (107)
                      ..-|.|+.|+..|+....+.        --|.|+.||...
T Consensus       107 ~~~Y~Cp~c~~r~tf~eA~~--------~~F~Cp~Cg~~L  138 (158)
T TIGR00373       107 NMFFICPNMCVRFTFNEAME--------LNFTCPRCGAML  138 (158)
T ss_pred             CCeEECCCCCcEeeHHHHHH--------cCCcCCCCCCEe
Confidence            36788999998887766654        368999998654

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.52  E-value=0.25  Score=22.31  Aligned_cols=22  Identities=23%  Similarity=0.546  Sum_probs=9.0

Q ss_pred             cccCCCCCCcccCh----HHHHHHHH
Q psy11352         78 FYACSSCSHVSRSR----DALRKHVS   99 (107)
Q Consensus        78 ~~~C~~C~~~f~~~----~~l~~H~~   99 (107)
                      -..|..|++.+...    ++|.+|++
T Consensus        16 ~a~C~~C~~~~~~~~~~ts~l~~HL~   41 (45)
T PF02892_consen   16 KAKCKYCGKVIKYSSGGTSNLKRHLK   41 (45)
T ss_dssp             -EEETTTTEE-----SSTHHHHHHHH
T ss_pred             eEEeCCCCeEEeeCCCcHHHHHHhhh
Confidence            34555555544432    45555553

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=89.51  E-value=0.41  Score=28.76  Aligned_cols=32  Identities=16%  Similarity=0.451  Sum_probs=23.6

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCCccc
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSR   89 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~~f~   89 (107)
                      .-|.|+.|+..|.....+.        --|.|+.||....
T Consensus       116 ~~Y~Cp~C~~rytf~eA~~--------~~F~Cp~Cg~~L~  147 (178)
T PRK06266        116 MFFFCPNCHIRFTFDEAME--------YGFRCPQCGEMLE  147 (178)
T ss_pred             CEEECCCCCcEEeHHHHhh--------cCCcCCCCCCCCe
Confidence            6788999998887765542        3688999986543

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=89.36  E-value=0.14  Score=23.12  Aligned_cols=12  Identities=8%  Similarity=0.265  Sum_probs=7.0

Q ss_pred             ccCCCCCCCCCccCC
Q psy11352         13 LISDHCLTSPLSSSI   27 (107)
Q Consensus        13 ~~C~~C~~~~~~~~~   27 (107)
                      |.|+.|   +..|..
T Consensus         6 y~C~~C---g~~fe~   17 (42)
T PF09723_consen    6 YRCEEC---GHEFEV   17 (42)
T ss_pred             EEeCCC---CCEEEE
Confidence            566666   655544

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=89.22  E-value=0.28  Score=27.70  Aligned_cols=30  Identities=7%  Similarity=-0.002  Sum_probs=17.7

Q ss_pred             eeCCCCcccccchhhHHHHHhhhCCCcccCCCCCCcccCh
Q psy11352         52 ATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSR   91 (107)
Q Consensus        52 ~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~~f~~~   91 (107)
                      ..|+.||+.|....          ..|..|+.||..|...
T Consensus        10 r~Cp~cg~kFYDLn----------k~p~vcP~cg~~~~~~   39 (129)
T TIGR02300        10 RICPNTGSKFYDLN----------RRPAVSPYTGEQFPPE   39 (129)
T ss_pred             ccCCCcCccccccC----------CCCccCCCcCCccCcc
Confidence            46777777664411          0467777777666444

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=89.18  E-value=0.62  Score=22.68  Aligned_cols=32  Identities=22%  Similarity=0.550  Sum_probs=20.8

Q ss_pred             CeeeCCCCcccccchhhHHHHHhh-hCCCcccCCCCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMET-HQNAFYACSSCSH   86 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~k~~~C~~C~~   86 (107)
                      ..|.|+.||......-.     +- -.+.+|.|+.||.
T Consensus        24 ~~F~CPnCG~~~I~RC~-----~CRk~~~~Y~CP~CGF   56 (59)
T PRK14890         24 VKFLCPNCGEVIIYRCE-----KCRKQSNPYTCPKCGF   56 (59)
T ss_pred             CEeeCCCCCCeeEeech-----hHHhcCCceECCCCCC
Confidence            56999999986333211     11 1226999999984

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=89.09  E-value=0.55  Score=18.84  Aligned_cols=19  Identities=16%  Similarity=0.534  Sum_probs=12.0

Q ss_pred             cCCCCCCcccChHHHHHHHH
Q psy11352         80 ACSSCSHVSRSRDALRKHVS   99 (107)
Q Consensus        80 ~C~~C~~~f~~~~~l~~H~~   99 (107)
                      .|++|++.+ ....+..|..
T Consensus         3 ~CPiC~~~v-~~~~in~HLD   21 (26)
T smart00734        3 QCPVCFREV-PENLINSHLD   21 (26)
T ss_pred             cCCCCcCcc-cHHHHHHHHH
Confidence            577777766 4456666655

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=89.06  E-value=0.27  Score=21.95  Aligned_cols=13  Identities=31%  Similarity=0.859  Sum_probs=8.7

Q ss_pred             CeeeCCCCccccc
Q psy11352         50 LFATCFVCGKQLS   62 (107)
Q Consensus        50 ~~~~C~~C~~~f~   62 (107)
                      .-|.|..|+..|.
T Consensus        27 ~fy~C~~C~~~w~   39 (40)
T smart00440       27 VFYVCTKCGHRWR   39 (40)
T ss_pred             EEEEeCCCCCEeC
Confidence            4577877876653

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=89.05  E-value=0.31  Score=20.71  Aligned_cols=11  Identities=27%  Similarity=0.685  Sum_probs=5.9

Q ss_pred             CcccCCCCCCc
Q psy11352         77 AFYACSSCSHV   87 (107)
Q Consensus        77 k~~~C~~C~~~   87 (107)
                      .+..|+.||..
T Consensus        16 ~~irC~~CG~R   26 (32)
T PF03604_consen   16 DPIRCPECGHR   26 (32)
T ss_dssp             STSSBSSSS-S
T ss_pred             CcEECCcCCCe
Confidence            35566666643

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=88.17  E-value=0.29  Score=30.26  Aligned_cols=26  Identities=27%  Similarity=0.705  Sum_probs=19.8

Q ss_pred             cccCCCCCCcccChHHHHHHHHccCC
Q psy11352         78 FYACSSCSHVSRSRDALRKHVSYRHP  103 (107)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~~H~  103 (107)
                      .|.|.+|+|.|.-...+..|+...|.
T Consensus        77 K~~C~lc~KlFkg~eFV~KHI~nKH~  102 (214)
T PF04959_consen   77 KWRCPLCGKLFKGPEFVRKHIFNKHP  102 (214)
T ss_dssp             EEEE-SSS-EESSHHHHHHHHHHH-H
T ss_pred             EECCCCCCcccCChHHHHHHHhhcCH
Confidence            58899999999998889999887775

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=87.66  E-value=0.52  Score=24.83  Aligned_cols=11  Identities=18%  Similarity=0.688  Sum_probs=5.5

Q ss_pred             cccCCCCCCcc
Q psy11352         78 FYACSSCSHVS   88 (107)
Q Consensus        78 ~~~C~~C~~~f   88 (107)
                      -+.|..||..|
T Consensus        53 IW~C~kCg~~f   63 (89)
T COG1997          53 IWKCRKCGAKF   63 (89)
T ss_pred             eEEcCCCCCee
Confidence            44555555544

>KOG1146|consensus

Probab=87.49  E-value=0.33  Score=37.31  Aligned_cols=59  Identities=14%  Similarity=0.188  Sum_probs=46.0

Q ss_pred             CCcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCC--------------------CCCCCCeeeCCCCcccccchhhH
Q psy11352          8 STLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGS--------------------SNHSKLFATCFVCGKQLSNQYNL   67 (107)
Q Consensus         8 ~~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~--------------------~~~~~~~~~C~~C~~~f~~~~~l   67 (107)
                      +..+-|+|+.|   +..|.....|..|   ++....+                    .....++|.|..|...+.....|
T Consensus       461 S~~kt~~cpkc---~~~yk~a~~L~vh---mRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~L  534 (1406)
T KOG1146|consen  461 SFFKTLKCPKC---NWHYKLAQTLGVH---MRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNL  534 (1406)
T ss_pred             cccccccCCcc---chhhhhHHHhhhc---ccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHH
Confidence            33478999999   9999999999999   7662110                    11335789999999999999999


Q ss_pred             HHHHh
Q psy11352         68 RVHME   72 (107)
Q Consensus        68 ~~H~~   72 (107)
                      ..|+.
T Consensus       535 sihlq  539 (1406)
T KOG1146|consen  535 SIHLQ  539 (1406)
T ss_pred             HHHHH
Confidence            88875

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=86.83  E-value=0.48  Score=22.21  Aligned_cols=29  Identities=17%  Similarity=0.455  Sum_probs=19.5

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCCc
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHV   87 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~~   87 (107)
                      ..|.|..||+.|....         ......|+.||..
T Consensus         5 ~~Y~C~~Cg~~~~~~~---------~~~~irCp~Cg~r   33 (49)
T COG1996           5 MEYKCARCGREVELDQ---------ETRGIRCPYCGSR   33 (49)
T ss_pred             EEEEhhhcCCeeehhh---------ccCceeCCCCCcE
Confidence            5689999998882111         1157789999853

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=86.29  E-value=0.7  Score=26.39  Aligned_cols=13  Identities=23%  Similarity=0.608  Sum_probs=10.4

Q ss_pred             cCCCCCCcccChH
Q psy11352         80 ACSSCSHVSRSRD   92 (107)
Q Consensus        80 ~C~~C~~~f~~~~   92 (107)
                      .|+.|.-+|.+.+
T Consensus       123 vCPvCkTSFKss~  135 (140)
T PF05290_consen  123 VCPVCKTSFKSSS  135 (140)
T ss_pred             CCCcccccccccc
Confidence            6899988887664

>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.22  E-value=0.2  Score=22.25  Aligned_cols=12  Identities=42%  Similarity=1.021  Sum_probs=8.5

Q ss_pred             CeeeCCCCcccc
Q psy11352         50 LFATCFVCGKQL   61 (107)
Q Consensus        50 ~~~~C~~C~~~f   61 (107)
                      .-|.|..|+..|
T Consensus        27 ~fy~C~~C~~~w   38 (39)
T PF01096_consen   27 LFYVCCNCGHRW   38 (39)
T ss_dssp             EEEEESSSTEEE
T ss_pred             EEEEeCCCCCee
Confidence            457788888765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....

>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]

Probab=86.21  E-value=0.32  Score=25.79  Aligned_cols=27  Identities=22%  Similarity=0.525  Sum_probs=16.9

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCCCcccCCCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCS   85 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~   85 (107)
                      +|-.|..||..|.... +        .+|-.|+.|.
T Consensus        57 ~Pa~CkkCGfef~~~~-i--------k~pSRCP~CK   83 (97)
T COG3357          57 RPARCKKCGFEFRDDK-I--------KKPSRCPKCK   83 (97)
T ss_pred             cChhhcccCccccccc-c--------CCcccCCcch
Confidence            4567888888776511 1        1477777774

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=85.80  E-value=0.73  Score=25.18  Aligned_cols=24  Identities=38%  Similarity=0.862  Sum_probs=20.3

Q ss_pred             ccC----CCCCCcccChHHHHHHHHccC
Q psy11352         79 YAC----SSCSHVSRSRDALRKHVSYRH  102 (107)
Q Consensus        79 ~~C----~~C~~~f~~~~~l~~H~~~~H  102 (107)
                      |.|    ..|+..+.+...+.+|.+..|
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~H  108 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEH  108 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhc
Confidence            778    889888888889999988755

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>TIGR01206 lysW lysine biosynthesis protein LysW

Probab=85.71  E-value=1.2  Score=21.38  Aligned_cols=13  Identities=31%  Similarity=0.703  Sum_probs=9.4

Q ss_pred             CeeeCCCCccccc
Q psy11352         50 LFATCFVCGKQLS   62 (107)
Q Consensus        50 ~~~~C~~C~~~f~   62 (107)
                      ....|+.||..+.
T Consensus        21 eiV~Cp~CGaele   33 (54)
T TIGR01206        21 ELVICDECGAELE   33 (54)
T ss_pred             CEEeCCCCCCEEE
Confidence            3568999987654

This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.

>KOG2186|consensus

Probab=85.30  E-value=0.29  Score=30.91  Aligned_cols=48  Identities=27%  Similarity=0.674  Sum_probs=37.7

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCCcccChHHHHHHHH
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVS   99 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~~f~~~~~l~~H~~   99 (107)
                      ..|.|+.||....- ..+.+|+....+.-|.|.-|++.|.. .....|..
T Consensus         2 V~FtCnvCgEsvKK-p~vekH~srCrn~~fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    2 VFFTCNVCGESVKK-PQVEKHMSRCRNAYFSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             eEEehhhhhhhccc-cchHHHHHhccCCeeEEeeccccccc-chhhhhhh
Confidence            35899999987654 45777988888888999999999988 45566654

>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function

Probab=84.78  E-value=1.9  Score=24.97  Aligned_cols=18  Identities=22%  Similarity=0.700  Sum_probs=10.4

Q ss_pred             cccCCCCCCcccChHHHH
Q psy11352         78 FYACSSCSHVSRSRDALR   95 (107)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~   95 (107)
                      -+.|+.||+.|...+...
T Consensus       124 f~~C~~C~kiyW~GsH~~  141 (147)
T PF01927_consen  124 FWRCPGCGKIYWEGSHWR  141 (147)
T ss_pred             EEECCCCCCEecccccHH
Confidence            456666666666554443

The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=84.14  E-value=0.65  Score=18.67  Aligned_cols=10  Identities=20%  Similarity=0.461  Sum_probs=6.0

Q ss_pred             cCCCCCCccc
Q psy11352         80 ACSSCSHVSR   89 (107)
Q Consensus        80 ~C~~C~~~f~   89 (107)
                      .|+.||..|.
T Consensus        16 ~Cp~CG~~F~   25 (26)
T PF10571_consen   16 FCPHCGYDFE   25 (26)
T ss_pred             cCCCCCCCCc
Confidence            4666666653

Several members are annotated as putative helicases.

>PRK09678 DNA-binding transcriptional regulator; Provisional

Probab=83.42  E-value=0.73  Score=23.46  Aligned_cols=18  Identities=11%  Similarity=0.359  Sum_probs=13.7

Q ss_pred             CeeeCC--CCcccccchhhH
Q psy11352         50 LFATCF--VCGKQLSNQYNL   67 (107)
Q Consensus        50 ~~~~C~--~C~~~f~~~~~l   67 (107)
                      ..+.|.  .||.+|.....+
T Consensus        26 ~Y~qC~N~eCg~tF~t~es~   45 (72)
T PRK09678         26 RYHQCQNVNCSATFITYESV   45 (72)
T ss_pred             eeeecCCCCCCCEEEEEEEE
Confidence            668897  899998876554

>KOG4167|consensus

Probab=83.20  E-value=0.88  Score=33.17  Aligned_cols=26  Identities=31%  Similarity=0.478  Sum_probs=22.2

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQ   75 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~   75 (107)
                      -.|.|..|++.|..-.++..||++|.
T Consensus       791 giFpCreC~kvF~KiKSrNAHMK~Hr  816 (907)
T KOG4167|consen  791 GIFPCRECGKVFFKIKSRNAHMKTHR  816 (907)
T ss_pred             ceeehHHHHHHHHHHhhhhHHHHHHH
Confidence            46889999999988888888988875

>PF14353 CpXC: CpXC protein

Probab=83.19  E-value=0.38  Score=27.09  Aligned_cols=55  Identities=20%  Similarity=0.280  Sum_probs=28.0

Q ss_pred             ccCCCCCCCCCccCCCCCCCCCCCCCCCCCCC-CCCCCCeeeCCCCcccccchhhHHHH
Q psy11352         13 LISDHCLTSPLSSSIPGSSKTKASGSGTTGGS-SNHSKLFATCFVCGKQLSNQYNLRVH   70 (107)
Q Consensus        13 ~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~-~~~~~~~~~C~~C~~~f~~~~~l~~H   70 (107)
                      ..||.|   +..|.........++....-... -...=..+.|+.||..|.-...+..|
T Consensus         2 itCP~C---~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~p~lY~   57 (128)
T PF14353_consen    2 ITCPHC---GHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEYPLLYH   57 (128)
T ss_pred             cCCCCC---CCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCCCEEEE
Confidence            368888   77776655544431111000000 00111457888888887666555444

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=82.92  E-value=0.86  Score=26.05  Aligned_cols=24  Identities=33%  Similarity=0.843  Sum_probs=15.8

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ..-.|-+||+.|..   |.+|+..|.|
T Consensus        71 d~i~clecGk~~k~---LkrHL~~~~g   94 (132)
T PF05443_consen   71 DYIICLECGKKFKT---LKRHLRTHHG   94 (132)
T ss_dssp             S-EE-TBT--EESB---HHHHHHHTT-
T ss_pred             CeeEEccCCcccch---HHHHHHHccC
Confidence            45679999999876   6899999865

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=82.83  E-value=1.4  Score=24.10  Aligned_cols=27  Identities=19%  Similarity=0.258  Sum_probs=23.2

Q ss_pred             CeeeC----CCCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATC----FVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C----~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      .-|.|    ..|+....+...+..|.+.+.|
T Consensus        79 ~G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   79 DGYRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CCeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            45889    9999999999999999987543

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center

Probab=82.26  E-value=2  Score=20.19  Aligned_cols=6  Identities=17%  Similarity=0.357  Sum_probs=3.7

Q ss_pred             ccCCCC
Q psy11352         13 LISDHC   18 (107)
Q Consensus        13 ~~C~~C   18 (107)
                      |+|..|
T Consensus         2 y~C~~C    7 (50)
T cd00730           2 YECRIC    7 (50)
T ss_pred             cCCCCC
Confidence            556666

Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.

>TIGR00244 transcriptional regulator NrdR

Probab=81.54  E-value=1.2  Score=25.88  Aligned_cols=18  Identities=11%  Similarity=0.300  Sum_probs=13.1

Q ss_pred             CeeeCCCCcccccchhhH
Q psy11352         50 LFATCFVCGKQLSNQYNL   67 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l   67 (107)
                      ..-+|..||+.|.+-..+
T Consensus        27 RRReC~~C~~RFTTyErv   44 (147)
T TIGR00244        27 RRRECLECHERFTTFERA   44 (147)
T ss_pred             ecccCCccCCccceeeec
Confidence            345899999999875443

Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.

>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=81.30  E-value=0.75  Score=18.89  Aligned_cols=19  Identities=21%  Similarity=0.553  Sum_probs=9.7

Q ss_pred             eeCCCCcccccchhhHHHHH
Q psy11352         52 ATCFVCGKQLSNQYNLRVHM   71 (107)
Q Consensus        52 ~~C~~C~~~f~~~~~l~~H~   71 (107)
                      |.|-.|++.|. ....+.|.
T Consensus         1 ~sCiDC~~~F~-~~~y~~Ht   19 (28)
T PF08790_consen    1 FSCIDCSKDFD-GDSYKSHT   19 (28)
T ss_dssp             EEETTTTEEEE-GGGTTT--
T ss_pred             CeeecCCCCcC-cCCcCCCC
Confidence            45677777773 33444443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=81.12  E-value=1.6  Score=17.26  Aligned_cols=10  Identities=30%  Similarity=0.537  Sum_probs=6.5

Q ss_pred             CeeeCCCCcc
Q psy11352         50 LFATCFVCGK   59 (107)
Q Consensus        50 ~~~~C~~C~~   59 (107)
                      ..|.|+.||+
T Consensus        15 v~f~CPnCG~   24 (24)
T PF07754_consen   15 VPFPCPNCGF   24 (24)
T ss_pred             ceEeCCCCCC
Confidence            4577777763

It is likely to bind zinc via its four well-conserved cysteine residues.

>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=80.93  E-value=1.3  Score=25.22  Aligned_cols=15  Identities=20%  Similarity=0.479  Sum_probs=12.7

Q ss_pred             CeeeCCCCcccccch
Q psy11352         50 LFATCFVCGKQLSNQ   64 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~   64 (107)
                      ..|.|..|+++|...
T Consensus        52 qRyrC~~C~~tf~~~   66 (129)
T COG3677          52 QRYKCKSCGSTFTVE   66 (129)
T ss_pred             cccccCCcCcceeee
Confidence            679999999998764

>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]

Probab=80.80  E-value=1.3  Score=25.84  Aligned_cols=16  Identities=19%  Similarity=0.522  Sum_probs=12.3

Q ss_pred             CeeeCCCCcccccchh
Q psy11352         50 LFATCFVCGKQLSNQY   65 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~   65 (107)
                      ..-.|..|+..|.+-.
T Consensus        27 RRReC~~C~~RFTTfE   42 (156)
T COG1327          27 RRRECLECGERFTTFE   42 (156)
T ss_pred             hhhcccccccccchhh
Confidence            4468999999987743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	107
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-05

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 38.9 bits (91), Expect = 2e-05
 Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 4/59 (6%)

Query: 53  TCFVCGKQLSNQYNLRVHMETHQNAF----YACSSCSHVSRSRDALRKHVSYRHPHISP 107
            C +CG     + +L  H   H        + C  C       D++  H S  HP +  
Sbjct: 9   QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	107
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.91
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.9
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.89
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.89
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.88
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.87
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.85
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.85
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.85
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.85
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.85
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.84
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.84
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.83
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.83
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.82
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.82
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.82
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.81
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.8
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.8
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.8
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.8
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.79
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.79
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.79
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.78
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.77
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.77
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.77
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.76
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.76
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.76
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.76
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.76
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.76
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.75
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.75
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.75
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.74
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.74
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.74
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.74
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.74
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.73
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.71
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.67
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.65
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.65
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.65
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.64
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.64
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.64
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.63
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.63
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.63
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.62
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.61
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.61
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.6
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.6
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.58
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.57
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.57
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.57
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.55
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.55
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.55
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.53
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.51
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.5
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.5
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.49
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.49
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.49
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.49
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.49
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.49
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.49
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.49
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.49
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.49
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.49
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.49
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.48
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.48
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.48
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.48
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.48
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.48
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.48
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.48
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.48
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.48
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.48
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.48
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.48
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.47
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.47
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.47
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.47
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.47
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.47
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.47
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.47
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.47
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.47
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.47
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.47
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.47
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.47
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.47
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.46
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.46
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.46
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.46
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.46
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.46
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.46
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.45
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.45
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.45
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.44
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.44
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.44
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.44
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.44
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.43
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.43
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.43
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.43
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.41
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.41
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.4
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.4
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.39
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.38
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.38
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.38
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.38
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.38
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.38
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.37
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.37
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.37
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.37
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.36
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.36
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.36
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.36
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.36
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.36
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.35
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.35
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.35
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.35
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.35
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.35
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.35
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.35
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.35
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.35
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.34
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.34
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.34
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.33
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.33
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.33
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.33
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.33
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.33
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.32
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.32
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.32
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.32
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.32
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.32
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.32
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.32
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.31
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.31
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.31
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.31
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.31
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.31
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.31
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.31
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.3
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.3
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.3
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.3
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.3
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.29
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.29
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.29
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.29
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.29
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.29
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.29
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.29
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.29
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.29
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.29
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.29
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.28
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.28
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.28
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.28
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.28
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.27
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.27
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.27
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.27
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.26
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.26
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.26
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.25
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.25
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.25
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.24
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.24
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.24
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.23
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.2
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.2
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.19
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.19
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.17
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	99.16
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.16
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.15
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.15
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.11
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.1
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.09
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.09
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	99.09
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.08
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.08
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.07
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.07
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.07
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.05
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	99.04
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.03
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.03
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	99.02
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	99.0
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.99
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.97
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.96
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.96
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.96
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.95
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.95
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.94
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.93
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.93
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.93
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.92
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.92
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.91
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.42
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.89
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.89
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.89
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.86
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.86
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.84
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.83
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.83
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.81
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.81
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	98.3
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.8
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.8
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.8
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.8
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.79
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.79
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.77
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.74
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.74
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.74
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.73
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.73
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.72
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.69
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.69
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.68
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.68
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.68
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	98.11
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.65
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.65
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.62
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.62
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.59
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.58
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.58
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.56
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.56
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.96
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.55
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.54
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.94
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.51
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.85
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.46
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.46
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.36
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.69
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.39
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	97.14
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.82
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.73
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	96.47
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.25
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	95.91
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	95.11
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	94.4
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	94.27
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	94.26
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	93.82
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	93.77
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	93.63
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	92.49
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	92.42
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	92.15
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	90.97
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	90.69
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	90.67
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	90.0
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.8
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	89.69
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	89.28
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	88.1
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	87.19
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	86.84
2ct5_A	73	Zinc finger BED domain containing protein 1; DREF	86.76
2kn9_A	81	Rubredoxin; metalloprotein, ssgcid, structural gen	86.36
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	85.68
1e8j_A	52	Rubredoxin; iron-sulfur-protein, zinc-substitution	85.59
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	84.81
2kdx_A	119	HYPA, hydrogenase/urease nickel incorporation prot	84.71
1lko_A	191	Rubrerythrin all-iron(II) form; reduced form, DIIR	84.19
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	83.37
3cc2_Z	116	50S ribosomal protein L37AE, 50S ribosomal protein	83.0
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	82.58
2czr_A	226	TBP-interacting protein; tata-binding protein (TBP	80.5

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.91  E-value=1.6e-26  Score=130.48  Aligned_cols=86  Identities=16%  Similarity=0.169  Sum_probs=80.9

Q ss_pred             CCcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCC
Q psy11352          8 STLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSH   86 (107)
Q Consensus         8 ~~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~   86 (107)
                      .++++|.|++|   ++.|.....|..|   +..|.++     ++|.|+.|++.|.....|..|+++|++ +||.|++|++
T Consensus        18 ~Gek~y~C~~C---~k~F~~~~~L~~H---~~~H~~~-----k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k   86 (133)
T 2lt7_A           18 DGRVYYICIVC---KRSYVCLTSLRRH---FNIHSWE-----KKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGK   86 (133)
T ss_dssp             TTEEEEEETTT---CCEESCHHHHHHH---HHHHHCC-----SCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCC
T ss_pred             CCCcCeECCCC---CCCcCCHHHHHHH---HHHcCCC-----CCeeCCccCeecccccchhhhccccCCCccccCCCCCC
Confidence            45789999999   9999999999999   8899988     999999999999999999999999999 9999999999


Q ss_pred             cccChHHHHHHHHccCCC
Q psy11352         87 VSRSRDALRKHVSYRHPH  104 (107)
Q Consensus        87 ~f~~~~~l~~H~~~~H~~  104 (107)
                      .|...+.|..|++++|.+
T Consensus        87 ~F~~~~~L~~H~~~hh~~  104 (133)
T 2lt7_A           87 SFINYQFMSSHIKSVHSQ  104 (133)
T ss_dssp             EESSHHHHHHHHHHHTCC
T ss_pred             CcCCHHHHHHHhHHhcCC
Confidence            999999999999985543

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.90  E-value=6.7e-24  Score=104.35  Aligned_cols=56  Identities=21%  Similarity=0.431  Sum_probs=53.7

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      +||.|++||+.|.....|..|+++|++ +||.|++||+.|...++|..|+++ |+||+
T Consensus         3 Kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~-Htgep   59 (60)
T 4gzn_C            3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKV-HQNKP   59 (60)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGG-GSCC-
T ss_pred             CCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCc-cCCCC
Confidence            899999999999999999999999999 999999999999999999999996 99985

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.89  E-value=3.7e-24  Score=114.24  Aligned_cols=88  Identities=20%  Similarity=0.271  Sum_probs=82.0

Q ss_pred             CCCcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCC
Q psy11352          7 PSTLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCS   85 (107)
Q Consensus         7 ~~~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~   85 (107)
                      +...++|.|+.|   ++.|.....|..|   +..+.+.     ++|.|+.|++.|.....|..|+++|.+ ++|.|++|+
T Consensus         3 ~~~~~~~~C~~C---~~~f~~~~~l~~H---~~~h~~~-----~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   71 (96)
T 2dmd_A            3 SGSSGPHKCEVC---GKCFSRKDKLKTH---MRCHTGV-----KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICP   71 (96)
T ss_dssp             CCCCCCCCBTTT---TBCCCCHHHHHHH---GGGCCCC-----CSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSS
T ss_pred             CCCCcCeECCCC---CCccCCHHHHHHH---HHhcCCC-----CCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCC
Confidence            345789999999   9999999999999   8888888     899999999999999999999999998 999999999


Q ss_pred             CcccChHHHHHHHHccCCCCC
Q psy11352         86 HVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        86 ~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      +.|.....|..|+++ |.+++
T Consensus        72 ~~f~~~~~l~~H~~~-h~~~~   91 (96)
T 2dmd_A           72 YASRNSSQLTVHLRS-HTGDS   91 (96)
T ss_dssp             CEESSHHHHHHHHTT-CCSCC
T ss_pred             CccCCHHHHHHHHHH-hcCCC
Confidence            999999999999997 77765

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.89  E-value=3.3e-24  Score=116.35  Aligned_cols=87  Identities=22%  Similarity=0.259  Sum_probs=82.0

Q ss_pred             CcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCc
Q psy11352          9 TLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHV   87 (107)
Q Consensus         9 ~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~   87 (107)
                      ..++|.|+.|   ++.|.....|..|   +..+.+.     ++|.|++|++.|.....|..|+++|.+ ++|.|.+|++.
T Consensus        14 ~~~~~~C~~C---~~~f~~~~~l~~H---~~~h~~~-----~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   82 (106)
T 2ee8_A           14 TKKEFICKFC---GRHFTKSYNLLIH---ERTHTDE-----RPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKG   82 (106)
T ss_dssp             CCCCCBCSSS---CCBCSSHHHHHHH---HHHHCCS-----CCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCC
T ss_pred             CCcCeECCCC---CCccCCHHHHHHH---HHHcCCC-----CCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCc
Confidence            4789999999   9999999999999   8888888     899999999999999999999999999 99999999999


Q ss_pred             ccChHHHHHHHHccCCCCCC
Q psy11352         88 SRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        88 f~~~~~l~~H~~~~H~~ekp  107 (107)
                      |.....|..|+++ |.+++|
T Consensus        83 f~~~~~L~~H~~~-H~~~~~  101 (106)
T 2ee8_A           83 FCQSRTLAVHKTL-HMQTSS  101 (106)
T ss_dssp             CSSHHHHHHHHHH-TTSCCC
T ss_pred             ccCHHHHHHHHHH-hCCCCC
Confidence            9999999999996 888876

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.88  E-value=2.4e-24  Score=113.71  Aligned_cols=86  Identities=21%  Similarity=0.322  Sum_probs=77.9

Q ss_pred             cccccCC--CCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCC
Q psy11352         10 LHFLISD--HCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSH   86 (107)
Q Consensus        10 ~~~~~C~--~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~   86 (107)
                      +++|.|+  .|   ++.|.....|..|   +..+.+.     ++|.|+.|++.|.....|..|+++|.+ ++|.|+.|++
T Consensus         2 ~k~~~C~~~~C---~~~f~~~~~l~~H---~~~h~~~-----~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   70 (90)
T 1a1h_A            2 ERPYACPVESC---DRRFSQSGSLTRH---IRIHTGQ-----KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR   70 (90)
T ss_dssp             -CCEECCSSSC---CCEESSHHHHHHH---HHHHHCC-----CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCC
T ss_pred             CCceECCCCCC---CCccCCHHHHHHH---HHHhCCC-----CCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCc
Confidence            5799998  69   9999999999999   8888887     899999999999999999999999999 9999999999


Q ss_pred             cccChHHHHHHHHccCCCCCC
Q psy11352         87 VSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        87 ~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|...+.|..|+++ |+++++
T Consensus        71 ~f~~~~~l~~H~~~-H~~~k~   90 (90)
T 1a1h_A           71 KFARSDERKRHTKI-HLRQKD   90 (90)
T ss_dssp             EESSHHHHHHHHGG-GGC---
T ss_pred             hhCCHHHHHHHHHH-hcccCC
Confidence            99999999999996 888874

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.87  E-value=4.3e-23  Score=109.88  Aligned_cols=89  Identities=20%  Similarity=0.274  Sum_probs=82.0

Q ss_pred             CCCcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC---CcccCCC
Q psy11352          7 PSTLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN---AFYACSS   83 (107)
Q Consensus         7 ~~~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---k~~~C~~   83 (107)
                      +++.++|.|+.|   ++.|.....|..|   +..+.++     ++|.|+.|++.|.....|..|+++|.+   ++|.|+.
T Consensus         2 s~~~~~~~C~~C---~~~f~~~~~l~~H---~~~h~~~-----~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~   70 (95)
T 2yt9_A            2 SSGSSGVACEIC---GKIFRDVYHLNRH---KLSHSGE-----KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQS   70 (95)
T ss_dssp             CCCCSCEECSSS---CCEESSSHHHHHH---HHHSCSS-----CSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSS
T ss_pred             CCCCCCeECCCC---CCccCChHHHHHH---HHhcCCC-----CCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCC
Confidence            456889999999   9999999999999   8888888     899999999999999999999999986   6999999


Q ss_pred             CCCcccChHHHHHHHHccCCCCC
Q psy11352         84 CSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        84 C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      |++.|.....|..|++..|+++.
T Consensus        71 C~~~f~~~~~L~~H~~~~H~~~~   93 (95)
T 2yt9_A           71 CGKGFSRPDHLNGHIKQVHSGPS   93 (95)
T ss_dssp             SCCCBSSHHHHHHHHHHTSCCCS
T ss_pred             ccchhCCHHHHHHHHHHhcCCCC
Confidence            99999999999999975698864

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.85  E-value=1.9e-23  Score=108.42  Aligned_cols=81  Identities=17%  Similarity=0.238  Sum_probs=75.7

Q ss_pred             cccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccC
Q psy11352         12 FLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRS   90 (107)
Q Consensus        12 ~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~   90 (107)
                      ||.|+.|   ++.|.....|..|   +..+.+.     ++|.|+.|++.|.....|..|+++|.+ ++|.|+.|++.|..
T Consensus         1 ~~~C~~C---~~~f~~~~~l~~H---~~~h~~~-----~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   69 (82)
T 2kmk_A            1 SFDCKIC---GKSFKRSSTLSTH---LLIHSDT-----RPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQ   69 (82)
T ss_dssp             CEECSSS---CCEESSHHHHHHH---HHHHHTC-----CCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESS
T ss_pred             CccCCCC---cccccCchhHHHH---HHHcCCC-----CCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCC
Confidence            6899999   9999999999999   8888877     899999999999999999999999999 99999999999999


Q ss_pred             hHHHHHHHHccCCC
Q psy11352         91 RDALRKHVSYRHPH  104 (107)
Q Consensus        91 ~~~l~~H~~~~H~~  104 (107)
                      .+.|..|+++ |+|
T Consensus        70 ~~~l~~H~~~-H~g   82 (82)
T 2kmk_A           70 SSNLITHSRK-HTG   82 (82)
T ss_dssp             HHHHHHHHHH-HC-
T ss_pred             hHHHHHHHHh-hCC
Confidence            9999999997 654

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.85  E-value=3e-22  Score=111.11  Aligned_cols=87  Identities=23%  Similarity=0.327  Sum_probs=76.5

Q ss_pred             CcccccCCCCCCCCCccCCCCCCCCCCCCCC---CCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352          9 TLHFLISDHCLTSPLSSSIPGSSKTKASGSG---TTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus         9 ~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~---~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      ..++|.|+.|   ++.|.....|..|   +.   .+.++     ++|.|+.|++.|.....|..|+++|.+ +||.|++|
T Consensus        32 ~~~~~~C~~C---~~~f~~~~~l~~H---~~~~~~~~~~-----~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  100 (124)
T 2dlq_A           32 GEKPFECPKC---GKCYFRKENLLEH---EARNCMNRSE-----QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSC  100 (124)
T ss_dssp             SCCSCBCTTT---CCBCSSHHHHHHH---HHHCCCCSCC-----CCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSS
T ss_pred             CCCCeECCCC---CchhcCHHHHHHH---HhhhhcCCCC-----CCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCc
Confidence            3678999999   9999888888888   54   34555     889999999999999999999999998 99999999


Q ss_pred             CCcccChHHHHHHHHccCCCCC
Q psy11352         85 SHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        85 ~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      ++.|.....|..|++.+|.+++
T Consensus       101 ~~~f~~~~~l~~H~~~~H~~~~  122 (124)
T 2dlq_A          101 SQQFMQKKDLQSHMIKLHSGPS  122 (124)
T ss_dssp             CCEESSHHHHHHHHHHTSSCSS
T ss_pred             cchhCCHHHHHHHHHHHCCCCC
Confidence            9999999999999987798875

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.85  E-value=3.4e-23  Score=115.09  Aligned_cols=92  Identities=22%  Similarity=0.397  Sum_probs=79.0

Q ss_pred             ccCCCCcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCC--CcccccchhhHHHHHhhhCC-Cccc
Q psy11352          4 HYKPSTLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFV--CGKQLSNQYNLRVHMETHQN-AFYA   80 (107)
Q Consensus         4 h~~~~~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~-k~~~   80 (107)
                      |++....++|.|+.|   ++.|.....|..|   +..+.++     ++|.|..  |++.|.....|..|+++|.+ ++|.
T Consensus        26 H~~~h~~~~~~C~~C---~~~f~~~~~l~~H---~~~h~~~-----~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~   94 (124)
T 1ubd_C           26 HLHTHGPRVHVCAEC---GKAFVESSKLKRH---QLVHTGE-----KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV   94 (124)
T ss_dssp             HHGGGSCCCEECTTT---CCEESSHHHHHHH---GGGTSCC-----CCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCC
T ss_pred             HHHHcCCCCeECCCC---CchhCCHHHHHHH---HHHcCCC-----CCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceE
Confidence            444446789999999   9999999999999   8888888     8999975  99999999999999999999 9999


Q ss_pred             CC--CCCCcccChHHHHHHHHccCCCCCC
Q psy11352         81 CS--SCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        81 C~--~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      |+  .|++.|...+.|..|+++ |++++|
T Consensus        95 C~~~~C~~~f~~~~~L~~H~~~-H~~~k~  122 (124)
T 1ubd_C           95 CPFDGCNKKFAQSTNLKSHILT-HAKAKN  122 (124)
T ss_dssp             CCSTTCCCCCSSTTTTHHHHHH-HC----
T ss_pred             CCCCCCCCccCCHHHHHHHHHH-Hccccc
Confidence            95  599999999999999996 888775

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.85  E-value=4e-23  Score=122.32  Aligned_cols=86  Identities=28%  Similarity=0.373  Sum_probs=72.9

Q ss_pred             cccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcc
Q psy11352         10 LHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVS   88 (107)
Q Consensus        10 ~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f   88 (107)
                      .++|.|+.|   ++.|.....|..|   +..+.++     ++|.|+.|++.|.....|..|+++|.+ +||.|+.|++.|
T Consensus       103 ~~~~~C~~C---~~~f~~~~~l~~H---~~~h~~~-----~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f  171 (190)
T 2i13_A          103 EKPYACPEC---GKSFSQLAHLRAH---QRTHTGE-----KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSF  171 (190)
T ss_dssp             CCCEECTTT---CCEESSHHHHHHH---HHHHHCC-----CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred             CCCCcCCCC---CCccCCHHHHHHH---HHHhCCC-----CCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCcc
Confidence            568888888   8888888888888   7777777     889999999999999999999999998 899999999999


Q ss_pred             cChHHHHHHHHccCCCCCC
Q psy11352         89 RSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        89 ~~~~~l~~H~~~~H~~ekp  107 (107)
                      .....|..|+++ |+|++|
T Consensus       172 ~~~~~L~~H~~~-H~~~k~  189 (190)
T 2i13_A          172 SRRDALNVHQRT-HTGKKT  189 (190)
T ss_dssp             SSHHHHHHHHTT-C-----
T ss_pred             CCHHHHHHHHHh-cCCCCC
Confidence            999999999996 888886

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.85  E-value=9.4e-21  Score=99.10  Aligned_cols=58  Identities=21%  Similarity=0.441  Sum_probs=54.8

Q ss_pred             CCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         49 KLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        49 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      .++|.|++|++.|.....|..|+++|++ +||.|++|++.|...+.|.+|++..|++|.
T Consensus        26 ~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           26 AECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            3889999999999999999999999999 999999999999999999999876799885

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=5.8e-23  Score=112.92  Aligned_cols=94  Identities=11%  Similarity=-0.036  Sum_probs=80.1

Q ss_pred             CccccCCC-CcccccCCCCCCCCCccCCCCCCCCCCCCCCC--CCCCCCCCCCe-eeCCCCcccc--cchhhHHHHHhhh
Q psy11352          1 MNFHYKPS-TLHFLISDHCLTSPLSSSIPGSSKTKASGSGT--TGGSSNHSKLF-ATCFVCGKQL--SNQYNLRVHMETH   74 (107)
Q Consensus         1 ~~~h~~~~-~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~--~~~~~~~~~~~-~~C~~C~~~f--~~~~~l~~H~~~h   74 (107)
                      |..|++.. ..++|.|+.|   ++.|.....|..|   +..  +...     ++ +.|+.|++.|  .....|..|+++|
T Consensus         7 l~~H~~~H~~~~~~~C~~C---~k~f~~~~~L~~H---~~~~~h~~~-----~~~~~C~~C~~~f~f~~~~~l~~H~~~H   75 (115)
T 2dmi_A            7 GKLYGSIFTGASKFRCKDC---SAAYDTLVELTVH---MNETGHYRD-----DNHETDNNNPKRWSKPRKRSLLEMEGKE   75 (115)
T ss_dssp             CCCCCCCCCCCCSEEBSSS---SCEESSHHHHHHH---HHHTCCCBC-----SCCCCCCCCCSCCSSCCCCCCCCCCCSC
T ss_pred             hhhheeeeCCCCCEECCcc---CchhcCHHHHHHH---HHHhCcccc-----CCCccCCCCCcccccccHHHHHHHhhcc
Confidence            45666644 4889999999   9999999999999   665  4444     44 4599999999  8999999999999


Q ss_pred             CC-CcccCCCCCCcccChHHHHHHHHccCCCC
Q psy11352         75 QN-AFYACSSCSHVSRSRDALRKHVSYRHPHI  105 (107)
Q Consensus        75 ~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~e  105 (107)
                      .+ +||.|++|++.|...+.|..|++++|..+
T Consensus        76 ~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~  107 (115)
T 2dmi_A           76 DAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQ  107 (115)
T ss_dssp             CCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTT
T ss_pred             CCCcceECCCCCCccCCHHHHHHHHHHhCCcc
Confidence            99 99999999999999999999999866543

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.84  E-value=5.7e-23  Score=111.76  Aligned_cols=85  Identities=13%  Similarity=0.100  Sum_probs=77.9

Q ss_pred             CcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCc
Q psy11352          9 TLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHV   87 (107)
Q Consensus         9 ~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~   87 (107)
                      ..++|.|+.|   ++.|.....|..|   +..|  .     ++|.|++|++.|.....|..|+. |.+ +||.|++|++.
T Consensus        13 ~~~~~~C~~C---~~~f~~~~~l~~H---~~~H--~-----~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~   78 (107)
T 1wjp_A           13 NKEVYQCRLC---NAKLSSLLEQGSH---ERLC--R-----NAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRT   78 (107)
T ss_dssp             CCCCCBCTTT---CCBCSSHHHHHHH---HHHH--H-----HSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEE
T ss_pred             CCcCeECCCC---CCccCCHHHHHHH---HHHC--C-----CCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccch
Confidence            4789999999   9999999999999   7766  3     67999999999999999999995 998 99999999999


Q ss_pred             ccChHHHHHHHHccCCCCCC
Q psy11352         88 SRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        88 f~~~~~l~~H~~~~H~~ekp  107 (107)
                      |.....|..|++.+|++++|
T Consensus        79 f~~~~~L~~H~~~~H~~~~~   98 (107)
T 1wjp_A           79 FKSSFSIWRHQVEVHNQNNM   98 (107)
T ss_dssp             CSSHHHHHHHHHHTSCCCCC
T ss_pred             hCCHHHHHHHHHHHcCCCCC
Confidence            99999999999856999876

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.83  E-value=2.3e-22  Score=110.87  Aligned_cols=88  Identities=19%  Similarity=0.303  Sum_probs=64.9

Q ss_pred             CCcccccCCC--CCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCC--CCcccccchhhHHHHHhhhCC-CcccCC
Q psy11352          8 STLHFLISDH--CLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCF--VCGKQLSNQYNLRVHMETHQN-AFYACS   82 (107)
Q Consensus         8 ~~~~~~~C~~--C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~-k~~~C~   82 (107)
                      ++.++|.|+.  |   ++.|.....|..|   +..+.++     ++|.|+  .|++.|.....|..|+++|.+ ++|.|+
T Consensus         2 ~~~~~~~C~~~~C---~~~f~~~~~l~~H---~~~h~~~-----~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   70 (119)
T 2jp9_A            2 SEKRPFMCAYPGC---NKRYFKLSHLQMH---SRKHTGE-----KPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCK   70 (119)
T ss_dssp             CSSCCBCCCSTTS---CCCBSCHHHHHHH---HHHHHTT-----CCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECT
T ss_pred             CCCeeeeCCCCCC---cchhCCHHHHHHH---HHhhCCC-----CCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCC
Confidence            3466777775  7   7777777777777   6666666     677777  677777777777777777777 777777


Q ss_pred             CCCCcccChHHHHHHHHccCCCCCC
Q psy11352         83 SCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        83 ~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|++.|.....|..|+++ |.+++|
T Consensus        71 ~C~~~f~~~~~l~~H~~~-h~~~~~   94 (119)
T 2jp9_A           71 TCQRKFSRSDHLKTHTRT-HTGEKP   94 (119)
T ss_dssp             TTCCEESCHHHHHHHHHH-HHTCCC
T ss_pred             ccCchhCCHHHHHHHHHH-hcCCCC
Confidence            777777777777777775 666654

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.83  E-value=3.7e-22  Score=108.92  Aligned_cols=83  Identities=24%  Similarity=0.336  Sum_probs=78.0

Q ss_pred             CCcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCC
Q psy11352          8 STLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSH   86 (107)
Q Consensus         8 ~~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~   86 (107)
                      .+.++|.| .|   ++.|.....|..|   +..+.+.     ++|.|+.|++.|.....|..|+++|.+ ++|.|++|++
T Consensus         6 ~~~k~~~C-~C---~~~f~~~~~l~~H---~~~h~~~-----~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   73 (110)
T 2csh_A            6 SGDKLYPC-QC---GKSFTHKSQRDRH---MSMHLGL-----RPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK   73 (110)
T ss_dssp             CCCCCEEC-TT---SCEESSHHHHHHH---HHHHSCC-----CSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCC
T ss_pred             CCCCCEec-cC---CCccCCHHHHHHH---HHHcCCC-----cCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcc
Confidence            45789999 99   9999999999999   8888888     899999999999999999999999999 9999999999


Q ss_pred             cccChHHHHHHHHccC
Q psy11352         87 VSRSRDALRKHVSYRH  102 (107)
Q Consensus        87 ~f~~~~~l~~H~~~~H  102 (107)
                      .|.....|..|++++|
T Consensus        74 ~f~~~~~l~~H~~~~~   89 (110)
T 2csh_A           74 RFMWRDSFHRHVTSCT   89 (110)
T ss_dssp             EESCHHHHHHHHHHHH
T ss_pred             hhcCHHHHHHHHHHcc
Confidence            9999999999999754

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.82  E-value=6.1e-20  Score=94.29  Aligned_cols=70  Identities=23%  Similarity=0.507  Sum_probs=64.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHh-hhCC--CcccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         30 SSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHME-THQN--AFYACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        30 ~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~--k~~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      ++..|   +++|.++     ++|.|++|++.|.....|..|++ .|.+  ++|.|+.|++.|.....|..|++++|..+.
T Consensus         2 s~~~H---~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~   73 (77)
T 2ct1_A            2 SSGSS---GRTHSGE-----KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSG   73 (77)
T ss_dssp             CCCCC---CCCCSCC-----CSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSC
T ss_pred             CCCcc---ccccCCC-----CCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            56788   8899998     99999999999999999999997 6775  699999999999999999999999899887


Q ss_pred             C
Q psy11352        107 P  107 (107)
Q Consensus       107 p  107 (107)
                      |
T Consensus        74 p   74 (77)
T 2ct1_A           74 P   74 (77)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=1.3e-21  Score=108.51  Aligned_cols=88  Identities=24%  Similarity=0.272  Sum_probs=80.6

Q ss_pred             CCcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhh---hCC-CcccCCC
Q psy11352          8 STLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMET---HQN-AFYACSS   83 (107)
Q Consensus         8 ~~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~---h~~-k~~~C~~   83 (107)
                      ++.++|.|+.|   ++.|.....|..|   +..+.++     ++|.|+.|++.|.....|..|+..   +.+ ++|.|++
T Consensus         3 ~~~~~~~C~~C---~~~f~~~~~l~~H---~~~h~~~-----~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~   71 (124)
T 2dlq_A            3 SGSSGVECPTC---HKKFLSKYYLKVH---NRKHTGE-----KPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV   71 (124)
T ss_dssp             CCCSSCCCTTT---CCCCSSHHHHHHH---HHHHSSC-----CSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSS
T ss_pred             CCCCCCCCCCC---CCcCCCHHHHHHH---HHhCCCC-----CCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCC
Confidence            45789999999   9999999999999   8888888     899999999999999999999986   456 8999999


Q ss_pred             CCCcccChHHHHHHHHccCCCCCC
Q psy11352         84 CSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        84 C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      |++.|.....|..|+++ |.+++|
T Consensus        72 C~~~f~~~~~l~~H~~~-h~~~~~   94 (124)
T 2dlq_A           72 CQETFRRRMELRLHMVS-HTGEMP   94 (124)
T ss_dssp             SCCEESSHHHHHHHHHH-HSSSCS
T ss_pred             CCCccCCHHHHHHHHHH-cCCCCC
Confidence            99999999999999996 888775

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.82  E-value=6.4e-22  Score=113.75  Aligned_cols=83  Identities=19%  Similarity=0.241  Sum_probs=72.4

Q ss_pred             ccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCC--CcccccchhhHHHHHhhhCC-CcccCCC--CCCc
Q psy11352         13 LISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFV--CGKQLSNQYNLRVHMETHQN-AFYACSS--CSHV   87 (107)
Q Consensus        13 ~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~-k~~~C~~--C~~~   87 (107)
                      |.|+.|   ++.|.....|..|   +..+.++     ++|.|..  |++.|.....|..|+++|.+ +||.|..  |++.
T Consensus        63 ~~C~~C---~~~f~~~~~l~~H---~~~h~~~-----~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~  131 (155)
T 2rpc_A           63 EECPRE---GKSFKAKYKLVNH---IRVHTGE-----KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRR  131 (155)
T ss_dssp             TTCTTS---SCCCSSHHHHHHH---THHHHCC-----CSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCC
T ss_pred             cCCCCc---ccccCCHHHHHHH---HHhcCCC-----CcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCc
Confidence            788888   8888888888888   7777777     8899987  99999999999999999998 8999986  9999


Q ss_pred             ccChHHHHHHHHccCCCCCC
Q psy11352         88 SRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        88 f~~~~~l~~H~~~~H~~ekp  107 (107)
                      |.....|..|+++ |++++|
T Consensus       132 f~~~~~L~~H~~~-H~~~k~  150 (155)
T 2rpc_A          132 FANSSDRKKHMHV-HTSDKS  150 (155)
T ss_dssp             BSSHHHHHHSSTT-TTSCCC
T ss_pred             cCCHHHHHHHHHH-hcCCCC
Confidence            9999999999985 888876

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.81  E-value=5.7e-21  Score=100.43  Aligned_cols=81  Identities=21%  Similarity=0.317  Sum_probs=76.2

Q ss_pred             cccccCCC--CCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCC--CCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         10 LHFLISDH--CLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCF--VCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        10 ~~~~~C~~--C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      ..+|.|+.  |   ++.|.....|..|   +..+.+.     ++|.|+  .|++.|.....|..|+++|.+ ++|.|+.|
T Consensus         3 ~~~~~C~~~~C---~~~f~~~~~l~~H---~~~h~~~-----~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   71 (89)
T 2wbs_A            3 TATHTCDYAGC---GKTYTKSSHLKAH---LRTHTGE-----KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC   71 (89)
T ss_dssp             CCCEECCSTTT---CCEESSHHHHHHH---HTTSCSS-----CCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSS
T ss_pred             CCCeeCCCCCC---CCcCCCHHHHHHH---HHhcCCC-----CCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCC
Confidence            56899999  9   9999999999999   8888888     899997  699999999999999999999 99999999


Q ss_pred             CCcccChHHHHHHHHccC
Q psy11352         85 SHVSRSRDALRKHVSYRH  102 (107)
Q Consensus        85 ~~~f~~~~~l~~H~~~~H  102 (107)
                      ++.|...+.|..|+++ |
T Consensus        72 ~~~f~~~~~l~~H~~~-H   88 (89)
T 2wbs_A           72 DRAFSRSDHLALHMKR-H   88 (89)
T ss_dssp             SCEESSHHHHHHHGGG-G
T ss_pred             CcccCCHHHHHHHHHh-h
Confidence            9999999999999996 5

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.80  E-value=5.2e-21  Score=102.57  Aligned_cols=84  Identities=19%  Similarity=0.300  Sum_probs=77.5

Q ss_pred             CcccccCCC--CCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCC--CCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352          9 TLHFLISDH--CLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCF--VCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus         9 ~~~~~~C~~--C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      ..++|.|+.  |   ++.|.....|..|   +..+.+.     ++|.|.  .|++.|.....|..|+++|.+ ++|.|++
T Consensus        12 ~~~~~~C~~~~C---~~~f~~~~~l~~H---~~~h~~~-----~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   80 (100)
T 2ebt_A           12 KRRIHYCDYPGC---TKVYTKSSHLKAH---LRTHTGE-----KPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV   80 (100)
T ss_dssp             SCCCEECCSSSC---CCEESCHHHHHHH---HHHHSCC-----CCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSS
T ss_pred             cCcceEcCCCCC---CCcccCHHHHHHH---HHHhCCC-----CCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCC
Confidence            467899996  9   9999999999999   8888888     899996  699999999999999999999 9999999


Q ss_pred             CCCcccChHHHHHHHHccCCC
Q psy11352         84 CSHVSRSRDALRKHVSYRHPH  104 (107)
Q Consensus        84 C~~~f~~~~~l~~H~~~~H~~  104 (107)
                      |++.|.....|..|+++ |++
T Consensus        81 C~~~f~~~~~l~~H~~~-H~~  100 (100)
T 2ebt_A           81 CNRSFSRSDHLALHMKR-HQN  100 (100)
T ss_dssp             SCCBCSSHHHHHHHHHH-HCC
T ss_pred             CcCccCCHHHHHHHHHH-hCC
Confidence            99999999999999997 653

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.80  E-value=8.5e-21  Score=112.28  Aligned_cols=87  Identities=26%  Similarity=0.370  Sum_probs=54.1

Q ss_pred             CcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCc
Q psy11352          9 TLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHV   87 (107)
Q Consensus         9 ~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~   87 (107)
                      +.++|.|+.|   ++.|.....|..|   +..+.+.     ++|.|+.|++.|.....|..|+++|.+ ++|.|+.|++.
T Consensus        18 ~~~~~~C~~C---~~~f~~~~~l~~H---~~~h~~~-----~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   86 (190)
T 2i13_A           18 GEKPYACPEC---GKSFSRSDHLAEH---QRTHTGE-----KPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKS   86 (190)
T ss_dssp             ----------------CCSSHHHHHG---GGCC--------CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCE
T ss_pred             CCCCCcCCCC---ccccCCHHHHHHH---HHHcCCC-----CCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCc
Confidence            4678888888   8888888888888   7777776     777888888888777778788777777 77777777777


Q ss_pred             ccChHHHHHHHHccCCCCCC
Q psy11352         88 SRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        88 f~~~~~l~~H~~~~H~~ekp  107 (107)
                      |.....|..|+++ |.+++|
T Consensus        87 f~~~~~l~~H~~~-h~~~~~  105 (190)
T 2i13_A           87 FSQRANLRAHQRT-HTGEKP  105 (190)
T ss_dssp             ESCHHHHHHHHHH-HHTCCC
T ss_pred             cCCHHHHHHHHHh-cCCCCC
Confidence            7777777777775 555543

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.80  E-value=6.2e-21  Score=105.93  Aligned_cols=85  Identities=21%  Similarity=0.324  Sum_probs=76.7

Q ss_pred             cccccCC--CCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC--C
Q psy11352         10 LHFLISD--HCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS--C   84 (107)
Q Consensus        10 ~~~~~C~--~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~--C   84 (107)
                      .++|.|+  .|   ++.|.....|..|   +..+ +.     ++|.|+.|++.|.....|..|+++|.+ ++|.|..  |
T Consensus         3 ~~~~~C~~~~C---~~~f~~~~~l~~H---~~~h-~~-----~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C   70 (124)
T 1ubd_C            3 PRTIACPHKGC---TKMFRDNSAMRKH---LHTH-GP-----RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC   70 (124)
T ss_dssp             --CEECCSTTC---CCEESSHHHHHHH---HGGG-SC-----CCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTC
T ss_pred             CCcccCCCCCC---cCccCCHHHHHHH---HHHc-CC-----CCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCC
Confidence            5689999  89   9999999999999   7777 56     889999999999999999999999999 9999986  9


Q ss_pred             CCcccChHHHHHHHHccCCCCCC
Q psy11352         85 SHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        85 ~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      ++.|.....|..|+++ |.+++|
T Consensus        71 ~~~f~~~~~l~~H~~~-h~~~~~   92 (124)
T 1ubd_C           71 GKRFSLDFNLRTHVRI-HTGDRP   92 (124)
T ss_dssp             CCEESCHHHHHHHHHH-HHCCCC
T ss_pred             cCccCCHHHHHHHHHH-hCCCCc
Confidence            9999999999999996 777765

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.80  E-value=1.5e-19  Score=92.21  Aligned_cols=57  Identities=23%  Similarity=0.371  Sum_probs=55.1

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      ++|.|+.|++.|.....|..|+++|.+ ++|.|.+|++.|.....|.+|+++ |++++|
T Consensus        16 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~kp   73 (74)
T 2lce_A           16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI-HSGEKP   73 (74)
T ss_dssp             CSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHH-HCCSCC
T ss_pred             CCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHh-cCCCCC
Confidence            889999999999999999999999999 999999999999999999999996 999987

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=2.6e-20  Score=99.87  Aligned_cols=77  Identities=22%  Similarity=0.266  Sum_probs=68.4

Q ss_pred             CCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCccccc-chhhHHHHHhhhCC--CcccCCCCCCcccChHHHHHHH
Q psy11352         22 PLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLS-NQYNLRVHMETHQN--AFYACSSCSHVSRSRDALRKHV   98 (107)
Q Consensus        22 ~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~-~~~~l~~H~~~h~~--k~~~C~~C~~~f~~~~~l~~H~   98 (107)
                      ..++.....+..|   +..+.++     ++|.|++|++.|. ....|..|+++|.+  ++|.|.+|++.|.....|.+|+
T Consensus         3 s~s~~~~~~~~~h---~~~h~~~-----~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~   74 (98)
T 2gqj_A            3 SGSSGPGGPEEQW---QRAIHER-----GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHT   74 (98)
T ss_dssp             CCCCCCCCSCSHH---HHTTTTT-----SCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHH
T ss_pred             CCCCCCCCcHHHH---HHHhccC-----CCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHH
Confidence            4456667778888   8888888     9999999999999 99999999999886  7999999999999999999999


Q ss_pred             HccCCCCCC
Q psy11352         99 SYRHPHISP  107 (107)
Q Consensus        99 ~~~H~~ekp  107 (107)
                      ++ |.+++|
T Consensus        75 ~~-h~~~kp   82 (98)
T 2gqj_A           75 MA-EHSAKP   82 (98)
T ss_dssp             HH-HSCSCS
T ss_pred             HH-HcCCCC
Confidence            97 667765

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.79  E-value=4e-19  Score=91.21  Aligned_cols=57  Identities=30%  Similarity=0.482  Sum_probs=54.9

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      ++|.|++|++.|.....|..|+++|.+ +||.|++|++.|.....|..|+++ |++++|
T Consensus        17 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~-H~~~~p   74 (77)
T 2cot_A           17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV-HTGSGP   74 (77)
T ss_dssp             CSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGG-SCCCCC
T ss_pred             CCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHH-hCCCCC
Confidence            899999999999999999999999999 999999999999999999999996 999987

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.79  E-value=6.3e-21  Score=105.10  Aligned_cols=81  Identities=22%  Similarity=0.345  Sum_probs=76.4

Q ss_pred             CcccccCC--CCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccC--CC
Q psy11352          9 TLHFLISD--HCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYAC--SS   83 (107)
Q Consensus         9 ~~~~~~C~--~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C--~~   83 (107)
                      ..++|.|+  .|   ++.|.....|..|   +..+.++     ++|.|+.|++.|.....|..|+++|.+ ++|.|  +.
T Consensus        33 ~~~~~~C~~~~C---~~~f~~~~~l~~H---~~~h~~~-----~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~  101 (119)
T 2jp9_A           33 GEKPYQCDFKDC---ERRFSRSDQLKRH---QRRHTGV-----KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPS  101 (119)
T ss_dssp             TTCCEECCSTTC---CCEESSHHHHHHH---HHHHHCC-----CCEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTT
T ss_pred             CCCCccCCCCCC---cCccCCHHHHHHH---HHHcCCC-----CCccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCC
Confidence            36799999  79   9999999999999   8888888     899999999999999999999999999 99999  89


Q ss_pred             CCCcccChHHHHHHHHc
Q psy11352         84 CSHVSRSRDALRKHVSY  100 (107)
Q Consensus        84 C~~~f~~~~~l~~H~~~  100 (107)
                      |++.|...+.|..|+++
T Consensus       102 C~~~f~~~~~L~~H~~~  118 (119)
T 2jp9_A          102 CQKKFARSDELVRHHNM  118 (119)
T ss_dssp             CCCEESSHHHHHHHHHT
T ss_pred             CccccCCHHHHHHHHhc
Confidence            99999999999999996

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.78  E-value=3e-19  Score=90.15  Aligned_cols=57  Identities=23%  Similarity=0.363  Sum_probs=53.9

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      ++|.|+.|++.|.....|..|+++|.+ ++|.|++|++.|.....|..|+++ |.+++|
T Consensus         8 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~-h~~~~p   65 (70)
T 1x5w_A            8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK-FHGDMS   65 (70)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHH-HHSSSC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHH-HhCCCC
Confidence            899999999999999999999999999 999999999999999999999997 667765

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.77  E-value=6.1e-19  Score=89.46  Aligned_cols=63  Identities=27%  Similarity=0.428  Sum_probs=57.4

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      .++|.++     ++|.|++|++.|.....|..|+++|.+ +||.|++|++.|.....|..|+++ |+++.
T Consensus         6 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~-H~~~~   69 (72)
T 1x6e_A            6 SGIHSGE-----KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI-HTSGP   69 (72)
T ss_dssp             CCTTTTC-----CCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHH-HHSSS
T ss_pred             CcccCCC-----CCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHh-cCCCC
Confidence            4566777     999999999999999999999999998 999999999999999999999997 66654

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.77  E-value=2.2e-22  Score=105.93  Aligned_cols=82  Identities=13%  Similarity=0.140  Sum_probs=76.3

Q ss_pred             cccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCCccc
Q psy11352         10 LHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSR   89 (107)
Q Consensus        10 ~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~~f~   89 (107)
                      ++||.|+.|   ++.|.....|..|   +..+.++     ++|.|+.|++.|.....|..|+++|.+.+|.|+.|++.|.
T Consensus         1 ek~~~C~~C---~k~f~~~~~L~~H---~~~H~~~-----~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~   69 (88)
T 1llm_C            1 MKPFQCRIC---MRNFSRSDHLTTH---IRTHTGE-----KPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLS   69 (88)
T ss_dssp             CCCEECTTT---CCEESCHHHHHHH---HHHHHCC-----CCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCC---CCccCCHHHHHHH---HHHcCCC-----CCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            478999999   9999999999999   8888888     8999999999999999999999999888999999999999


Q ss_pred             ChHHHHHHHHccC
Q psy11352         90 SRDALRKHVSYRH  102 (107)
Q Consensus        90 ~~~~l~~H~~~~H  102 (107)
                      ....|..|++.+|
T Consensus        70 ~~~~L~~H~~~~h   82 (88)
T 1llm_C           70 KNYHLENEVARLK   82 (88)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHH
Confidence            9999999998655

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=1.2e-20  Score=108.20  Aligned_cols=80  Identities=29%  Similarity=0.339  Sum_probs=46.5

Q ss_pred             cccccCCC--CCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCC--CcccccchhhHHHHH-hhhCC-CcccCCC
Q psy11352         10 LHFLISDH--CLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFV--CGKQLSNQYNLRVHM-ETHQN-AFYACSS   83 (107)
Q Consensus        10 ~~~~~C~~--C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~-~~h~~-k~~~C~~   83 (107)
                      .++|.|+.  |   ++.|.....|..|   +..+.++     ++|.|+.  |++.|.+...|..|+ ++|.+ ++|.|+.
T Consensus        65 ~~~~~C~~~~C---~~~f~~~~~l~~H---~~~h~~~-----~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  133 (155)
T 2gli_A           65 EKPHKCTFEGC---RKSYSRLENLKTH---LRSHTGE-----KPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKL  133 (155)
T ss_dssp             CCCCCCCSTTC---CCCCSSHHHHHHH---HHHTTTC-----CCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCS
T ss_pred             CCCccCCCCCC---CCcccCHHHHHHH---HHHcCCC-----CCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCC
Confidence            34555553  5   5555555555555   5555555     5566655  666666666666665 45555 5666655


Q ss_pred             --CCCcccChHHHHHHHHc
Q psy11352         84 --CSHVSRSRDALRKHVSY  100 (107)
Q Consensus        84 --C~~~f~~~~~l~~H~~~  100 (107)
                        |++.|...+.|..|+++
T Consensus       134 ~~C~~~f~~~~~L~~H~~~  152 (155)
T 2gli_A          134 PGCTKRYTDPSSLRKHVKT  152 (155)
T ss_dssp             TTTCCEESSHHHHHHHHHH
T ss_pred             CCCccccCCHHHHHHHHHh
Confidence              66666666666666654

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.76  E-value=1.1e-19  Score=104.31  Aligned_cols=92  Identities=18%  Similarity=0.285  Sum_probs=78.1

Q ss_pred             CcccccCCCCCCCCCccCCCCCCCCCCCCCCC-CCCCCCC---CCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352          9 TLHFLISDHCLTSPLSSSIPGSSKTKASGSGT-TGGSSNH---SKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus         9 ~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~-~~~~~~~---~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      ...+|.|+.|   ++.|.....|..|   +.. |.+....   ....|.|+.|++.|.....|..|+++|.+ ++|.|..
T Consensus        22 ~~~~~~C~~C---~~~f~~~~~L~~H---~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   95 (155)
T 2rpc_A           22 AQLSRPKKSC---DRTFSTMHELVTH---VTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPF   95 (155)
T ss_dssp             TCCSSSCCCC---CCCBSSHHHHHHH---HHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSC
T ss_pred             hhcccccccC---CcccCCHHHHHHH---HHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCc
Confidence            3568999999   9999999999999   665 5544110   11237899999999999999999999999 9999998


Q ss_pred             --CCCcccChHHHHHHHHccCCCCCC
Q psy11352         84 --CSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        84 --C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                        |++.|.....|..|+++ |.+++|
T Consensus        96 ~~C~~~f~~~~~L~~H~~~-h~~~~~  120 (155)
T 2rpc_A           96 PGCGKIFARSENLKIHKRT-HTGEKP  120 (155)
T ss_dssp             TTTCCEESCHHHHHHHHTT-TCSSCS
T ss_pred             CCCCCccCCHHHHHHHHHh-hCCCCC
Confidence              99999999999999996 888875

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.76  E-value=1.3e-19  Score=107.10  Aligned_cols=83  Identities=22%  Similarity=0.338  Sum_probs=51.4

Q ss_pred             cccccCC--CCCCCCCccCCCCCCCCCCCCC-CCC-CCCCCCCCCeeeC--CCCcccccchhhHHHHHhhhCC-CcccCC
Q psy11352         10 LHFLISD--HCLTSPLSSSIPGSSKTKASGS-GTT-GGSSNHSKLFATC--FVCGKQLSNQYNLRVHMETHQN-AFYACS   82 (107)
Q Consensus        10 ~~~~~C~--~C~~~~~~~~~~~~l~~h~~~~-~~~-~~~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~-k~~~C~   82 (107)
                      .++|.|+  .|   ++.|.....|..|   + ..+ .+.     .+|.|  +.|++.|.....|..|+++|++ +||.|+
T Consensus        70 ~~~~~C~~~~C---~~~f~~~~~l~~H---~~~~h~~~~-----~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~  138 (190)
T 1tf6_A           70 EKNFTCDSDGC---DLRFTTKANMKKH---FNRFHNIKI-----CVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP  138 (190)
T ss_dssp             CCCEECCSSSC---CCEESCHHHHHHH---HHTTSSTTT-----SCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCC
T ss_pred             CCceeCCCCCC---CCccCCHHHHHHH---HHHhcCCCc-----ceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCC
Confidence            4556665  56   6666666555555   4 333 233     55666  6677777776677777666666 667776


Q ss_pred             C--CCCcccChHHHHHHHHccCCC
Q psy11352         83 S--CSHVSRSRDALRKHVSYRHPH  104 (107)
Q Consensus        83 ~--C~~~f~~~~~l~~H~~~~H~~  104 (107)
                      .  |++.|...+.|..|+++ |++
T Consensus       139 ~~~C~k~F~~~~~L~~H~~~-H~~  161 (190)
T 1tf6_A          139 HEGCDKRFSLPSRLKRHEKV-HAG  161 (190)
T ss_dssp             SSSCCCBCSSHHHHHHHHTS-SCS
T ss_pred             CCCCCchhcCHHHHHHHHHH-hCC
Confidence            5  77777777777777664 544

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.76  E-value=3.6e-20  Score=106.30  Aligned_cols=92  Identities=18%  Similarity=0.245  Sum_probs=76.1

Q ss_pred             CCcccccCCCC--CCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCC--CcccccchhhHHHHHhhhCC-CcccCC
Q psy11352          8 STLHFLISDHC--LTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFV--CGKQLSNQYNLRVHMETHQN-AFYACS   82 (107)
Q Consensus         8 ~~~~~~~C~~C--~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~-k~~~C~   82 (107)
                      ...++|.|+.|  +.-++.|.....|..|   +..+.++     ++|.|+.  |++.|.....|..|+++|.+ ++|.|+
T Consensus        30 ~~~~~~~C~~c~C~~c~~~f~~~~~l~~H---~~~h~~~-----~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  101 (155)
T 2gli_A           30 GERKEFVCHWGGCSRELRPFKAQYMLVVH---MRRHTGE-----KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE  101 (155)
T ss_dssp             SCSSCCCCCBTTCTTTTCCCSSHHHHHHH---THHHHCC-----CCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECC
T ss_pred             CCCcceeCCCCCccchhhhhhhHHHHHHH---HHhcCCC-----CCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCC
Confidence            44678888753  1114889888889999   8888887     8899975  99999999999999999998 899999


Q ss_pred             C--CCCcccChHHHHHHHHccCCCCCC
Q psy11352         83 S--CSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        83 ~--C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .  |++.|...+.|..|++..|++++|
T Consensus       102 ~~~C~~~f~~~~~L~~H~~~~H~~~~~  128 (155)
T 2gli_A          102 HEGCSKAFSNASDRAKHQNRTHSNEKP  128 (155)
T ss_dssp             STTCCCEESSSSTTHHHHHHTTCSCCC
T ss_pred             CCCCCCccCCHHHHHHHHHHhcCCCCC
Confidence            8  999999999999998335888875

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=2.1e-18  Score=88.65  Aligned_cols=58  Identities=22%  Similarity=0.391  Sum_probs=54.4

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhC---C-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQ---N-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~---~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      ++|.|++|++.|.....|..|+++|.   + ++|.|.+|++.|.....|..|++.+|.+++|
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~   67 (78)
T 2d9h_A            6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL   67 (78)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSS
T ss_pred             cCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            89999999999999999999999998   3 7999999999999999999999778998875

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.76  E-value=1.8e-19  Score=101.52  Aligned_cols=64  Identities=23%  Similarity=0.377  Sum_probs=59.4

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      ..++.|+     ++|.|++|++.|.....|..|+++|++ +||.|++|++.|...+.|..|+++ |++|+|
T Consensus        14 ~~~h~Ge-----k~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~   78 (133)
T 2lt7_A           14 ELIVDGR-----VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH-HTGERR   78 (133)
T ss_dssp             EEEETTE-----EEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHH-HHTCCC
T ss_pred             eeecCCC-----cCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccc-cCCCcc
Confidence            4456677     999999999999999999999999999 999999999999999999999996 999886

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.76  E-value=2e-18  Score=93.07  Aligned_cols=57  Identities=26%  Similarity=0.495  Sum_probs=51.7

Q ss_pred             CeeeCCCCcccccchhhHHHHHh-hh---CC-CcccCCCCCCcccChHHHHHH-HHccCCCCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHME-TH---QN-AFYACSSCSHVSRSRDALRKH-VSYRHPHISP  107 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~-~h---~~-k~~~C~~C~~~f~~~~~l~~H-~~~~H~~ekp  107 (107)
                      ++|.|+.|++.|.....|..|++ +|   .+ +||.|.+||+.|...+.|..| +++ |++|+|
T Consensus        17 kpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~-Htgekp   79 (102)
T 2ghf_A           17 GGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKY-HPGEEN   79 (102)
T ss_dssp             SSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHT-STTCCC
T ss_pred             cCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHh-cCCCCC
Confidence            89999999999999999999997 58   56 899999999999999999999 775 999987

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.75  E-value=2.2e-18  Score=83.52  Aligned_cols=55  Identities=25%  Similarity=0.515  Sum_probs=51.7

Q ss_pred             eeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         51 FATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      +|.|+.|++.|.....|..|+++|.+ +||.|+.|++.|...+.|..|+++ |.+++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS-KAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHS-SSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHH-hcccC
Confidence            58999999999999999999999999 999999999999999999999997 76665

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.75  E-value=5.2e-20  Score=95.85  Aligned_cols=78  Identities=24%  Similarity=0.407  Sum_probs=73.1

Q ss_pred             cccC--CCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCC--CcccccchhhHHHHHhhhCCCcccCCC---C
Q psy11352         12 FLIS--DHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFV--CGKQLSNQYNLRVHMETHQNAFYACSS---C   84 (107)
Q Consensus        12 ~~~C--~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~k~~~C~~---C   84 (107)
                      ||.|  +.|   ++.|.....|..|   +..+.++     ++|.|+.  |++.|.....|..|+++|.+  |.|..   |
T Consensus         1 p~~C~~~~C---~~~f~~~~~l~~H---~~~h~~~-----~~~~C~~~~C~~~f~~~~~l~~H~~~h~~--~~C~~~~~C   67 (85)
T 2j7j_A            1 MYVCHFENC---GKAFKKHNQLKVH---QFSHTQQ-----LPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSC   67 (85)
T ss_dssp             CEECCSTTC---CCEESSHHHHHHH---HHHHHTT-----CCEECCSTTCCCEESSHHHHHHHHHHHHS--EECCSCSSC
T ss_pred             CccCCCCCC---CcccCCHHHHHHH---HHHhCCC-----CCeeCCCCCCcCccCCHHHHHHHHHHhCC--CCCCCCCCC
Confidence            6899  999   9999999999999   8888888     8999988  99999999999999999998  99999   9


Q ss_pred             CCcccChHHHHHHHHccC
Q psy11352         85 SHVSRSRDALRKHVSYRH  102 (107)
Q Consensus        85 ~~~f~~~~~l~~H~~~~H  102 (107)
                      ++.|...+.|..|++++|
T Consensus        68 ~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           68 SFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             CCEESSHHHHHHHHHHCC
T ss_pred             CCccCCHHHHHHHHHhcC
Confidence            999999999999999754

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.75  E-value=2e-20  Score=91.82  Aligned_cols=58  Identities=19%  Similarity=0.261  Sum_probs=55.1

Q ss_pred             cccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCCCc
Q psy11352         10 LHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQNAF   78 (107)
Q Consensus        10 ~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~k~   78 (107)
                      ++||.|++|   ++.|.....|..|   +++|+++     ++|.|++||+.|.....|..|+++|+|+|
T Consensus         2 EKpy~C~~C---~k~F~~~~~L~~H---~~~Ht~e-----kp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFC---GKTYRDASGLSRH---RRAHLGY-----RPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTT---CCEESSHHHHHHH---HHHHHTC-----CCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCC---CCEeCCHHHHHHH---HHHhCCC-----cCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            689999999   9999999999999   9999999     99999999999999999999999999854

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.74  E-value=1.3e-17  Score=86.92  Aligned_cols=69  Identities=22%  Similarity=0.390  Sum_probs=59.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-----CcccCCCCCCcccChHHHHHHHHccCCC
Q psy11352         30 SSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-----AFYACSSCSHVSRSRDALRKHVSYRHPH  104 (107)
Q Consensus        30 ~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-----k~~~C~~C~~~f~~~~~l~~H~~~~H~~  104 (107)
                      ++..|   +++|.++     ++|.|+.|++.|.....|..|++.|.+     ++|.|..|++.|.....|..|+++ |.+
T Consensus         2 s~~~H---~~~H~~~-----k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~-h~~   72 (86)
T 1x6h_A            2 SSGSS---GRTHTGE-----KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN-CAG   72 (86)
T ss_dssp             TTTCC---STTCCCC-----CCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHH-CCC
T ss_pred             Ccccc---cceecCC-----CCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHH-ccC
Confidence            56778   8888888     999999999999999999999987654     479999999999999999999996 777


Q ss_pred             CCC
Q psy11352        105 ISP  107 (107)
Q Consensus       105 ekp  107 (107)
                      ++|
T Consensus        73 ~~~   75 (86)
T 1x6h_A           73 PDG   75 (86)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            654

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.74  E-value=1.7e-19  Score=92.90  Aligned_cols=72  Identities=21%  Similarity=0.212  Sum_probs=58.1

Q ss_pred             CCCcccccCCC--CCCCCCccCCCCCCCCCCCCCC-CCCCCCCCCCCeeeCCC--CcccccchhhHHHHHhhhCC-Cccc
Q psy11352          7 PSTLHFLISDH--CLTSPLSSSIPGSSKTKASGSG-TTGGSSNHSKLFATCFV--CGKQLSNQYNLRVHMETHQN-AFYA   80 (107)
Q Consensus         7 ~~~~~~~~C~~--C~~~~~~~~~~~~l~~h~~~~~-~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~-k~~~   80 (107)
                      ++..++|.|+.  |   ++.|.....|..|   +. .|.++     ++|.|+.  |++.|.....|..|+++|++ +||.
T Consensus         2 s~~~~~~~C~~~~C---~~~f~~~~~L~~H---~~~~H~~~-----~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~   70 (79)
T 2dlk_A            2 SSGSSGMPCDFPGC---GRIFSNRQYLNHH---KKYQHIHQ-----KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYI   70 (79)
T ss_dssp             CSCCSSEECSSTTT---CCEESSHHHHHHH---HHHGGGSC-----CCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCS
T ss_pred             CCCCCCccCCCCCC---cCccCCHHHHHHH---HHHHhCCC-----CCeECCCCCCcCccCCHHHHHHHHHHhCCCCCee
Confidence            44567788876  8   8888888888888   76 57777     7888887  88888888888888888887 8888


Q ss_pred             CCCCCCccc
Q psy11352         81 CSSCSHVSR   89 (107)
Q Consensus        81 C~~C~~~f~   89 (107)
                      |++|++.|.
T Consensus        71 C~~C~k~F~   79 (79)
T 2dlk_A           71 CEFSGPSSG   79 (79)
T ss_dssp             CCSSSCCCC
T ss_pred             CCCCCCCCC
Confidence            888888773

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.74  E-value=4.3e-19  Score=94.86  Aligned_cols=55  Identities=22%  Similarity=0.441  Sum_probs=51.5

Q ss_pred             CeeeCCCCcccc-cchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHH-HHccCCCCC
Q psy11352         50 LFATCFVCGKQL-SNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKH-VSYRHPHIS  106 (107)
Q Consensus        50 ~~~~C~~C~~~f-~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H-~~~~H~~ek  106 (107)
                      ++|.|+.|++.| .....|..|+++| + +||.|.+|++.|...+.|..| +++ |+++.
T Consensus        33 ~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~-H~~~p   90 (96)
T 2ctd_A           33 GSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMAN-HNSLP   90 (96)
T ss_dssp             SCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHH-TCCCS
T ss_pred             CCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHh-cCCCC
Confidence            889999999999 9999999999999 8 999999999999999999999 775 88653

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.74  E-value=8.3e-19  Score=103.69  Aligned_cols=87  Identities=20%  Similarity=0.331  Sum_probs=69.3

Q ss_pred             CcccccC--CCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCC--CCcccccchhhHHHHH-hhhC-C-CcccC
Q psy11352          9 TLHFLIS--DHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCF--VCGKQLSNQYNLRVHM-ETHQ-N-AFYAC   81 (107)
Q Consensus         9 ~~~~~~C--~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~-~~h~-~-k~~~C   81 (107)
                      ..++|.|  +.|   ++.|.....|..|   +..+.++     ++|.|+  .|++.|.+...|..|+ +.|. + ++|.|
T Consensus        39 ~~~~~~C~~~~C---~~~f~~~~~l~~H---~~~h~~~-----~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C  107 (190)
T 1tf6_A           39 GEKPFPCKEEGC---EKGFTSLHHLTRH---SLTHTGE-----KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVC  107 (190)
T ss_dssp             CCCSSCCSSTTC---CCCCSSHHHHHHH---HTTTTTC-----CCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEE
T ss_pred             CCCCccCCCCCC---ChhhCCHHHHHHH---HHHccCC-----CceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeC
Confidence            3567888  778   8888888888888   7777777     788888  7888888888888888 5663 4 68888


Q ss_pred             --CCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         82 --SSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        82 --~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                        +.|++.|.....|..|+++ |++++|
T Consensus       108 ~~~~C~k~f~~~~~L~~H~~~-H~~~~~  134 (190)
T 1tf6_A          108 HFENCGKAFKKHNQLKVHQFS-HTQQLP  134 (190)
T ss_dssp             CSSSSCEECSSHHHHHHHHGG-GSSSCS
T ss_pred             CCCCCccccCCHHHHHHHHHH-hCCCCC
Confidence              7788888888888888885 777765

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.74  E-value=4.2e-18  Score=83.37  Aligned_cols=57  Identities=28%  Similarity=0.477  Sum_probs=52.4

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      ++|.|+.|++.|.....|..|+++|++ +||.|+.|++.|...+.|..|++..|+++.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~   58 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL   58 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCSS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCcC
Confidence            479999999999999999999999999 999999999999999999999854688763

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.73  E-value=2.7e-18  Score=83.23  Aligned_cols=53  Identities=30%  Similarity=0.639  Sum_probs=49.3

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHHHHccC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRH  102 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H  102 (107)
                      ++|.|+.|++.|.....|..|+++|.+ +||.|+.|++.|.....|..|++++|
T Consensus         3 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            3 SSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             --CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            789999999999999999999999998 99999999999999999999999865

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=7.3e-18  Score=83.97  Aligned_cols=53  Identities=28%  Similarity=0.499  Sum_probs=50.1

Q ss_pred             CeeeCCCCcccccchhhHHHHHhh-h-CC-CcccCCCCCCcccChHHHHHHHHccC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMET-H-QN-AFYACSSCSHVSRSRDALRKHVSYRH  102 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~-h-~~-k~~~C~~C~~~f~~~~~l~~H~~~~H  102 (107)
                      ++|.|+.|++.|.....|..|++. | .+ +||.|+.|++.|...+.|..|++++|
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H   64 (66)
T 2drp_A            9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH   64 (66)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHc
Confidence            899999999999999999999998 7 47 99999999999999999999999865

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=1.2e-17  Score=85.57  Aligned_cols=64  Identities=20%  Similarity=0.186  Sum_probs=59.9

Q ss_pred             CCCcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccC
Q psy11352          7 PSTLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYAC   81 (107)
Q Consensus         7 ~~~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C   81 (107)
                      ....++|.|+.|   ++.|.....|..|   +..|.++     ++|.|++|++.|.....|..|+++|++ +||.|
T Consensus        13 ~~~~~~~~C~~C---~~~f~~~~~l~~H---~~~h~~~-----~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           13 QRERRRYKCDEC---GKSFSHSSDLSKH---RRTHTGE-----KPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCSCSSBCSSS---CCBCSCHHHHHHH---HTTTCCS-----CSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCCEECCCC---CcccCCHHHHHHH---HHHcCCC-----cCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            345789999999   9999999999999   8889988     999999999999999999999999999 99987

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=3.1e-16  Score=79.43  Aligned_cols=53  Identities=23%  Similarity=0.444  Sum_probs=50.2

Q ss_pred             CeeeCC--CCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCC
Q psy11352         50 LFATCF--VCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHP  103 (107)
Q Consensus        50 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~  103 (107)
                      ++|.|+  .|++.|.....|..|+++|.+ ++|.|+.|++.|...+.|..|+++ |+
T Consensus        18 ~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-Ht   73 (73)
T 1f2i_G           18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HT   73 (73)
T ss_dssp             CCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTT-CC
T ss_pred             CccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHh-cC
Confidence            889997  699999999999999999999 999999999999999999999996 64

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.65  E-value=1.3e-15  Score=82.19  Aligned_cols=58  Identities=34%  Similarity=0.670  Sum_probs=54.6

Q ss_pred             CCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         49 KLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        49 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +++|.|+.|++.|.....|..|+++|.+ ++|.|.+|++.|.....|..|+++ |.+++|
T Consensus        15 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~   73 (106)
T 2ee8_A           15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYI-HSKEKP   73 (106)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGG-SCCCCT
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHH-hCCCCC
Confidence            4789999999999999999999999999 999999999999999999999996 888775

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=3.2e-16  Score=78.08  Aligned_cols=55  Identities=18%  Similarity=0.264  Sum_probs=51.2

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-CcccCC-CCCCcccChHHHHHHHHccCCCCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AFYACS-SCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~-~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      ++|.|+.|++.|. ...|..|+++ ++ +||.|+ .|++.|...+.|..|+++ |..++|
T Consensus         9 ~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~-hc~~~~   65 (66)
T 2eod_A            9 RTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKD-SCNTAL   65 (66)
T ss_dssp             CEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHT-TSSSCC
T ss_pred             CCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHh-hcccCc
Confidence            8999999999999 9999999999 88 999999 999999999999999996 776654

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.64  E-value=4.6e-16  Score=82.57  Aligned_cols=57  Identities=32%  Similarity=0.602  Sum_probs=54.2

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      ++|.|+.|++.|.....|..|+++|.+ ++|.|+.|++.|.....|..|+++ |.+++|
T Consensus         7 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~   64 (96)
T 2dmd_A            7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDERP   64 (96)
T ss_dssp             CCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHH-SCCCCC
T ss_pred             cCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHH-hCCCCC
Confidence            889999999999999999999999999 999999999999999999999996 888765

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=6.3e-16  Score=84.01  Aligned_cols=61  Identities=26%  Similarity=0.564  Sum_probs=55.9

Q ss_pred             CCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         40 TTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        40 ~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .+.++     ++|.| .|++.|.....|..|+++|.+ ++|.|..|++.|.....|..|+++ |.+++|
T Consensus         4 ~h~~~-----k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~   65 (110)
T 2csh_A            4 GSSGD-----KLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTGIKP   65 (110)
T ss_dssp             CCCCC-----CCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTT-TCCCCC
T ss_pred             CCCCC-----CCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHH-cCCCCC
Confidence            45566     89999 999999999999999999999 999999999999999999999996 888765

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.64  E-value=3.8e-19  Score=99.39  Aligned_cols=82  Identities=17%  Similarity=0.158  Sum_probs=64.0

Q ss_pred             cccccCCCCCCCCCccC------CCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCCCcccCCC
Q psy11352         10 LHFLISDHCLTSPLSSS------IPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSS   83 (107)
Q Consensus        10 ~~~~~C~~C~~~~~~~~------~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~   83 (107)
                      .+.+.|+.|   ...|.      ....|..|   + .+.++     ++|.|+.|++.|.....|..|+++| .+||.|+.
T Consensus        39 ~~~~~c~~~---~~~~~~~~~~~~~~~l~~h---~-~h~~~-----~~~~C~~C~k~f~~~~~l~~H~~~H-~~~~~C~~  105 (129)
T 2wbt_A           39 QKRLIRAIV---KTLIHNPQLLDESSYLYRL---L-ASKAI-----SQFVCPLCLMPFSSSVSLKQHIRYT-EHTKVCPV  105 (129)
T ss_dssp             HHHHHHHHH---HHHHHCGGGTTTHHHHHHH---H-HHHHH-----CSEECTTTCCEESSHHHHHHHHHHT-CCCCBCTT
T ss_pred             hCcccchhh---hcccCCCcccCCHHHHHHH---H-HhCCC-----CCeECCCCCcccCCHhHHHHHHHHC-CCCCCCCC
Confidence            445566665   44443      33334444   3 34555     8999999999999999999999999 88999999


Q ss_pred             CCCcccChHHHHHHHHccCCCC
Q psy11352         84 CSHVSRSRDALRKHVSYRHPHI  105 (107)
Q Consensus        84 C~~~f~~~~~l~~H~~~~H~~e  105 (107)
                      |++.|...+.|..|+++ |.++
T Consensus       106 C~k~f~~~~~l~~H~~~-h~~~  126 (129)
T 2wbt_A          106 CKKEFTSTDSALDHVCK-KHNI  126 (129)
T ss_dssp             TCCBCSSHHHHHHHHHH-TTCC
T ss_pred             CCcccCCHHHHHHHHHH-HCCc
Confidence            99999999999999997 5554

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=1.5e-16  Score=87.09  Aligned_cols=72  Identities=15%  Similarity=0.084  Sum_probs=63.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhh--hCC-Cc-ccCCCCCCcc--cChHHHHHHHHc
Q psy11352         27 IPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMET--HQN-AF-YACSSCSHVS--RSRDALRKHVSY  100 (107)
Q Consensus        27 ~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~-k~-~~C~~C~~~f--~~~~~l~~H~~~  100 (107)
                      +...|..|   ++.+.++     ++|.|++|++.|.....|..|+++  |.+ ++ +.|+.|++.|  .....|..|+++
T Consensus         3 s~~~l~~H---~~~H~~~-----~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~   74 (115)
T 2dmi_A            3 SGSSGKLY---GSIFTGA-----SKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGK   74 (115)
T ss_dssp             CCCCCCCC---CCCCCCC-----CSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCS
T ss_pred             cchhhhhh---eeeeCCC-----CCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhc
Confidence            35678899   8889988     999999999999999999999998  766 55 4599999999  899999999996


Q ss_pred             cCCCCCC
Q psy11352        101 RHPHISP  107 (107)
Q Consensus       101 ~H~~ekp  107 (107)
                       |++++|
T Consensus        75 -H~~~~~   80 (115)
T 2dmi_A           75 -EDAQKV   80 (115)
T ss_dssp             -CCCCSS
T ss_pred             -cCCCcc
Confidence             888876

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.63  E-value=4.1e-16  Score=81.74  Aligned_cols=53  Identities=25%  Similarity=0.498  Sum_probs=50.8

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHHHHccC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRH  102 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H  102 (107)
                      ++|.|+.|++.|.....|..|+++|.+ +||.|+.|++.|...+.|..|++++|
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~   55 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH   55 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhC
Confidence            689999999999999999999999999 99999999999999999999999755

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=1e-17  Score=90.26  Aligned_cols=68  Identities=9%  Similarity=0.014  Sum_probs=60.6

Q ss_pred             CCCcccccCCCCCCCCCccCCCCCCCCCCCCCC-CC---CCCCCCCCCeeeCCCCcccccchhhHHHH-HhhhCC-Cccc
Q psy11352          7 PSTLHFLISDHCLTSPLSSSIPGSSKTKASGSG-TT---GGSSNHSKLFATCFVCGKQLSNQYNLRVH-METHQN-AFYA   80 (107)
Q Consensus         7 ~~~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~-~~---~~~~~~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~-k~~~   80 (107)
                      ..+++||.|+.|   ++.|.....|..|   +. .+   .++     ++|.|++||+.|.....|..| +++|++ +||.
T Consensus        13 ~~gekpy~C~~C---gk~F~~~~~L~~H---~r~~H~~~~~e-----kpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~   81 (102)
T 2ghf_A           13 KKVEGGYECKYC---TFQTPDLNMFTFH---VDSEHPNVVLN-----SSYVCVECNFLTKRYDALSEHNLKYHPGEENFK   81 (102)
T ss_dssp             CCCCSSEECSSC---SCEESCHHHHHHH---HHHHCSSCCCS-----CCEEETTTTEEESSTHHHHTHHHHTSTTCCCEE
T ss_pred             CCCCcCcCCCCC---CCccCCHHHHHHH---HHhhCCCCCCC-----CCcCCCCCCcccCCHHHHHHHHHHhcCCCCCee
Confidence            445899999999   9999999999999   76 36   456     899999999999999999999 899999 9999


Q ss_pred             CCCCC
Q psy11352         81 CSSCS   85 (107)
Q Consensus        81 C~~C~   85 (107)
                      |.++.
T Consensus        82 C~~~~   86 (102)
T 2ghf_A           82 LTMVK   86 (102)
T ss_dssp             EEECC
T ss_pred             CCccc
Confidence            98754

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=5.7e-16  Score=79.48  Aligned_cols=57  Identities=23%  Similarity=0.483  Sum_probs=53.0

Q ss_pred             CeeeCCC--CcccccchhhHHHHHh-hhCC-CcccCCC--CCCcccChHHHHHHHHccCCCCCC
Q psy11352         50 LFATCFV--CGKQLSNQYNLRVHME-THQN-AFYACSS--CSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        50 ~~~~C~~--C~~~f~~~~~l~~H~~-~h~~-k~~~C~~--C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      ++|.|..  |++.|.....|..|++ .|.+ ++|.|+.  |++.|.....|..|+++ |++++|
T Consensus         6 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~~~   68 (79)
T 2dlk_A            6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL-HSDTRD   68 (79)
T ss_dssp             SSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHH-HHTSCC
T ss_pred             CCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHH-hCCCCC
Confidence            7899986  9999999999999999 7998 9999999  99999999999999996 888876

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.61  E-value=1.4e-15  Score=80.51  Aligned_cols=56  Identities=27%  Similarity=0.520  Sum_probs=52.3

Q ss_pred             CCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCC
Q psy11352         49 KLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHI  105 (107)
Q Consensus        49 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~e  105 (107)
                      .++|.|+.|++.|.....|..|+++|.+ ++|.|+.|++.|.....|..|+++ |.++
T Consensus         5 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~   61 (95)
T 2yt9_A            5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGS   61 (95)
T ss_dssp             CSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHH-HCCC
T ss_pred             CCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHH-hcCC
Confidence            3889999999999999999999999998 999999999999999999999997 5554

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=1.1e-16  Score=83.33  Aligned_cols=80  Identities=10%  Similarity=0.063  Sum_probs=65.5

Q ss_pred             ccccCCC-CcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-Ccc
Q psy11352          2 NFHYKPS-TLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFY   79 (107)
Q Consensus         2 ~~h~~~~-~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~   79 (107)
                      .-|++.. ..++|.|+.|   ++.|.....|..|   +..+.... ...++|.|+.|++.|.....|..|+++|.+ +++
T Consensus         4 ~~H~~~H~~~k~~~C~~C---~~~f~~~~~l~~H---~~~~~~~~-~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~   76 (86)
T 1x6h_A            4 GSSGRTHTGEKPYACSHC---DKTFRQKQLLDMH---FKRYHDPN-FVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGV   76 (86)
T ss_dssp             TCCSTTCCCCCCEECSSS---SCEESSHHHHHHH---HHHTTCSS-CCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSC
T ss_pred             ccccceecCCCCCcCCCC---CCccCCHHHHHHH---HHHhcCCc-CCCcceECCCCCChhCCHHHHHHHHHHccCCCCc
Confidence            4466644 4889999999   9999999999999   65443320 112579999999999999999999999999 999


Q ss_pred             cCCCCCCcc
Q psy11352         80 ACSSCSHVS   88 (107)
Q Consensus        80 ~C~~C~~~f   88 (107)
                      .|..|+..|
T Consensus        77 ~~~~~~~~~   85 (86)
T 1x6h_A           77 EGENSGPSS   85 (86)
T ss_dssp             CCCCCCCCC
T ss_pred             ccCCCCCCC
Confidence            999999875

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=4.1e-15  Score=78.74  Aligned_cols=57  Identities=18%  Similarity=0.236  Sum_probs=52.5

Q ss_pred             CeeeCCCCcccccchhhHHHHHhh-hCC-Cc--------ccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMET-HQN-AF--------YACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~-k~--------~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      ..+.|+.|++.|.....|..|+++ |.+ ++        |.|..|++.|.....|..|+++ |++++|
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   90 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV-HTGEKS   90 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHH-HHTCCC
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHh-cCCCCC
Confidence            447899999999999999999998 888 66        9999999999999999999996 999886

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.60  E-value=6.5e-16  Score=79.67  Aligned_cols=56  Identities=25%  Similarity=0.550  Sum_probs=52.4

Q ss_pred             eeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         51 FATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|.|+.|++.|.....|..|+++|.+ ++|.|+.|++.|.....|..|+++ |.+++|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~   57 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTGEKP   57 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHH-HHTCCC
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHH-hcCCCC
Confidence            58999999999999999999999998 999999999999999999999996 777765

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.58  E-value=1.2e-16  Score=81.29  Aligned_cols=61  Identities=23%  Similarity=0.368  Sum_probs=57.0

Q ss_pred             CCcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-Ccc
Q psy11352          8 STLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFY   79 (107)
Q Consensus         8 ~~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~   79 (107)
                      ...++|.|+.|   ++.|.....|..|   +..|.++     ++|.|+.|++.|.....|..|+++|++ +||
T Consensus        13 ~~~~~~~C~~C---~k~f~~~~~l~~H---~~~H~~~-----~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           13 HSDKPYKCDRC---QASFRYKGNLASH---KTVHTGE-----KPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCSBCCTTS---SCCBSCHHHHHHH---HHHHCCC-----CSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             CCCCCeECCCC---CceeCCHHHHHHH---HHHcCCC-----CCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            45789999999   9999999999999   8889888     999999999999999999999999998 876

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.57  E-value=2e-15  Score=79.13  Aligned_cols=57  Identities=23%  Similarity=0.429  Sum_probs=53.1

Q ss_pred             CeeeCC--CCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         50 LFATCF--VCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        50 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      ++|.|+  .|++.|.....|..|+++|.+ ++|.|..|++.|.....|..|+++ |.+++|
T Consensus         3 k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~   62 (90)
T 1a1h_A            3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKP   62 (90)
T ss_dssp             CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHH-HHCCCC
T ss_pred             CceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHH-cCCCCC
Confidence            789998  699999999999999999998 999999999999999999999996 777765

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.57  E-value=1.1e-14  Score=73.42  Aligned_cols=51  Identities=27%  Similarity=0.475  Sum_probs=48.4

Q ss_pred             CeeeCCC--CcccccchhhHHHHHhhhCC-CcccCCC--CCCcccChHHHHHHHHc
Q psy11352         50 LFATCFV--CGKQLSNQYNLRVHMETHQN-AFYACSS--CSHVSRSRDALRKHVSY  100 (107)
Q Consensus        50 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~-k~~~C~~--C~~~f~~~~~l~~H~~~  100 (107)
                      ++|.|..  |++.|.....|..|+++|++ +||.|.+  |++.|.....|.+|+++
T Consensus        16 ~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred             CceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhc
Confidence            7899988  99999999999999999999 9999965  99999999999999986

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=1.9e-16  Score=80.05  Aligned_cols=65  Identities=12%  Similarity=0.002  Sum_probs=44.0

Q ss_pred             ccccCCC-CcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-Ccc
Q psy11352          2 NFHYKPS-TLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFY   79 (107)
Q Consensus         2 ~~h~~~~-~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~   79 (107)
                      ..|++.. +.++|.|+.|   ++.|.....|..          +     ++|.|+.|++.|.....|..|+++|++ +||
T Consensus         7 ~~H~~~h~~~~~~~C~~C---~k~f~~~~~l~~----------~-----~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~   68 (73)
T 2ctu_A            7 GKRQKIHLGDRSQKCSKC---GIIFIRRSTLSR----------R-----KTPMCEKCRKDSCQEAALNKDEGNESGKKTS   68 (73)
T ss_dssp             CCCCCCCCCCSEEECSSS---CCEEECCCCCCC----------S-----SSCCCHHHHHTCSCCCSSCCCSSCCCCCCCS
T ss_pred             HHHHHHhCCCCCeeCCcc---cchhCCHHHhCc----------C-----CCCCCCCCChhhcCHHHHHHHHHhhcCCCCC
Confidence            3455533 3667777777   777777666543          3     567777777777777777777777777 777


Q ss_pred             cCCCC
Q psy11352         80 ACSSC   84 (107)
Q Consensus        80 ~C~~C   84 (107)
                      .|++|
T Consensus        69 ~C~~C   73 (73)
T 2ctu_A           69 GPSSG   73 (73)
T ss_dssp             SCCCC
T ss_pred             CCCCC
Confidence            77765

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.55  E-value=7.4e-15  Score=79.44  Aligned_cols=62  Identities=18%  Similarity=0.223  Sum_probs=55.7

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +..+.++     ++|.|++|++.|.....|..|+++|. ++|.|.+|++.|.....|..|+.  |++++|
T Consensus         8 ~~~h~~~-----~~~~C~~C~~~f~~~~~l~~H~~~H~-~~~~C~~C~~~f~~~~~l~~H~~--H~~~~~   69 (107)
T 1wjp_A            8 ASPVENK-----EVYQCRLCNAKLSSLLEQGSHERLCR-NAAVCPYCSLRFFSPELKQEHES--KCEYKK   69 (107)
T ss_dssp             CCCCCCC-----CCCBCTTTCCBCSSHHHHHHHHHHHH-HSBCCTTTCCCBSSHHHHHHHHH--HCSTGG
T ss_pred             CcccCCC-----cCeECCCCCCccCCHHHHHHHHHHCC-CCccCCCCCCccCCHHHHHHHHH--cCCCCC
Confidence            5566777     89999999999999999999999985 69999999999999999999994  888765

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=1.3e-16  Score=80.65  Aligned_cols=66  Identities=21%  Similarity=0.257  Sum_probs=59.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         27 IPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        27 ~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      ....|..|   +..|.++     ++|.|++|++.|.....|..      +++|.|+.|++.|...+.|..|+++ |++++
T Consensus         2 ~~~~l~~H---~~~h~~~-----~~~~C~~C~k~f~~~~~l~~------~~~~~C~~C~~~f~~~~~l~~H~~~-H~~~~   66 (73)
T 2ctu_A            2 SSGSSGKR---QKIHLGD-----RSQKCSKCGIIFIRRSTLSR------RKTPMCEKCRKDSCQEAALNKDEGN-ESGKK   66 (73)
T ss_dssp             CCCSCCCC---CCCCCCC-----SEEECSSSCCEEECCCCCCC------SSSCCCHHHHHTCSCCCSSCCCSSC-CCCCC
T ss_pred             cchhHHHH---HHHhCCC-----CCeeCCcccchhCCHHHhCc------CCCCCCCCCChhhcCHHHHHHHHHh-hcCCC
Confidence            35678889   8889988     99999999999999988876      6899999999999999999999996 88887


Q ss_pred             C
Q psy11352        107 P  107 (107)
Q Consensus       107 p  107 (107)
                      |
T Consensus        67 ~   67 (73)
T 2ctu_A           67 T   67 (73)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.55  E-value=1.2e-14  Score=69.52  Aligned_cols=41  Identities=24%  Similarity=0.330  Sum_probs=39.2

Q ss_pred             CeeeCCCCcccccchhhHHHHHh-hhCC-CcccCCCCCCcccC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHME-THQN-AFYACSSCSHVSRS   90 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~-~h~~-k~~~C~~C~~~f~~   90 (107)
                      ++|.|++|++.|.....|..|++ +|.+ +||.|++|++.|.+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A           11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            89999999999999999999997 8999 99999999999976

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.53  E-value=2.4e-15  Score=72.07  Aligned_cols=49  Identities=20%  Similarity=0.308  Sum_probs=39.8

Q ss_pred             cccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         58 GKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        58 ~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      ++.|.....|..|+++|++ +||.|..|++.|...+.|..|+++ |++|+|
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~kp   52 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLEL-RHFAKP   52 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHH-HTTTSC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHH-hccCCC
Confidence            3567777778888888888 888888888888888888888885 888876

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.51  E-value=7.7e-14  Score=74.32  Aligned_cols=59  Identities=25%  Similarity=0.515  Sum_probs=53.6

Q ss_pred             CCCeeeCCC--CcccccchhhHHHHHhhhCC-CcccCC--CCCCcccChHHHHHHHHccCCCCCC
Q psy11352         48 SKLFATCFV--CGKQLSNQYNLRVHMETHQN-AFYACS--SCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        48 ~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~-k~~~C~--~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      ..++|.|..  |++.|.....|..|+++|.+ ++|.|.  .|++.|.....|..|+++ |.+++|
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~   75 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKP   75 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHH-HTSCCS
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHH-hCCCCC
Confidence            347899986  99999999999999999998 999996  699999999999999996 888775

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=4.8e-14  Score=65.15  Aligned_cols=42  Identities=31%  Similarity=0.400  Sum_probs=38.9

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      ++.|.++     ++|.|++|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            4 GSSGTGE-----KPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCSSC-----CSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             cCCcCCC-----CCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            6778888     999999999999999999999999999 99999987

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=1.6e-15  Score=76.22  Aligned_cols=61  Identities=18%  Similarity=0.150  Sum_probs=56.3

Q ss_pred             CCcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-Ccc
Q psy11352          8 STLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFY   79 (107)
Q Consensus         8 ~~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~   79 (107)
                      ...++|.|+.|   ++.|.....|..|   +..|.++     ++|.|++|++.|.....|..|+++|.+ +|.
T Consensus         5 ~~~~~~~C~~C---~k~f~~~~~L~~H---~~~H~~~-----~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            5 SSGHPEKCSEC---SYSCSSKAALRIH---ERIHCTD-----RPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             CCCCSEECSSS---SCEESSHHHHHHH---HGGGCCS-----CSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCeECCCC---CcccCCHHHHHHH---HHHcCCC-----CCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            45789999999   9999999999999   8889888     899999999999999999999999987 653

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=5.6e-14  Score=64.93  Aligned_cols=42  Identities=31%  Similarity=0.408  Sum_probs=38.9

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            4 GSSGTGE-----NPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSS-----CCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCC-----cCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            6777777     999999999999999999999999999 99999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=6.1e-14  Score=64.76  Aligned_cols=42  Identities=24%  Similarity=0.244  Sum_probs=38.9

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..|.++     ++|.|++|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            4 GSSGSGE-----KPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCTTCCC-----CSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCC-----CCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6778888     899999999999999999999999999 99999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.49  E-value=4.9e-14  Score=65.09  Aligned_cols=42  Identities=26%  Similarity=0.259  Sum_probs=38.7

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            4 GSSGTGV-----KPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCSCCC-----CSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccCCCCC-----CceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6777887     899999999999999999999999999 99999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=5.1e-14  Score=65.11  Aligned_cols=42  Identities=19%  Similarity=0.288  Sum_probs=38.8

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..+.++     ++|.|++|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~H~~~-----~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            4 GSSGSST-----KSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCS-----CSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             cCCCCCC-----CCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6777777     899999999999999999999999999 99999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=4.3e-14  Score=65.37  Aligned_cols=42  Identities=24%  Similarity=0.309  Sum_probs=39.1

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            4 GSSGSGE-----RPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCSCC-----CCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCC-----CCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            7778888     999999999999999999999999999 99999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.49  E-value=5e-14  Score=65.12  Aligned_cols=42  Identities=26%  Similarity=0.286  Sum_probs=38.5

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            4 GSSGTGE-----KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSS-----CSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCccCCC-----CceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6777777     899999999999999999999999999 99999887

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=6.1e-14  Score=64.77  Aligned_cols=42  Identities=24%  Similarity=0.266  Sum_probs=39.0

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      ++.|.++     ++|.|+.|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            4 GSSGTGE-----RPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCC-----CSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             cCCcCCC-----CCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6777888     999999999999999999999999999 99999987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=5e-14  Score=65.11  Aligned_cols=42  Identities=24%  Similarity=0.269  Sum_probs=38.3

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            4 GSSGTGK-----KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCC-----SSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CcCCCCC-----cCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            6677777     899999999999999999999999999 99999887

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.49  E-value=3.2e-14  Score=74.29  Aligned_cols=57  Identities=30%  Similarity=0.566  Sum_probs=52.9

Q ss_pred             CeeeCCC--CcccccchhhHHHHHhhhCC-CcccCC--CCCCcccChHHHHHHHHccCCCCCC
Q psy11352         50 LFATCFV--CGKQLSNQYNLRVHMETHQN-AFYACS--SCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        50 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~-k~~~C~--~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .+|.|+.  |++.|.....|..|+++|.+ ++|.|+  .|++.|.....|..|+++ |.+++|
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~   65 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRP   65 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHH-HHCCCC
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHH-cCCCCC
Confidence            6799999  99999999999999999999 999997  699999999999999996 888765

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=6.1e-14  Score=64.80  Aligned_cols=42  Identities=26%  Similarity=0.293  Sum_probs=38.2

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..|.++     ++|.|+.|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            4 GSSGTGE-----KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SCTTSSC-----CSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             ccCCCCC-----cCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6777777     899999999999999999999999998 99999876

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=5.9e-14  Score=64.84  Aligned_cols=42  Identities=24%  Similarity=0.298  Sum_probs=38.9

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..|.++     ++|.|+.|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~H~~~-----~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            4 GSSGSGE-----KPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSS-----CSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             cccCCCC-----CCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            6777777     999999999999999999999999999 99999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=6.1e-14  Score=64.80  Aligned_cols=42  Identities=26%  Similarity=0.404  Sum_probs=38.5

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            4 GSSGTGE-----KPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCSSCC-----CSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCC-----cCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6677777     899999999999999999999999999 99999887

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=4.8e-14  Score=65.17  Aligned_cols=42  Identities=26%  Similarity=0.242  Sum_probs=38.9

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..+.++     ++|.|++|++.|.....|..|+++|++ +||.|+.|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            4 GSSGTGV-----KPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCC-----CSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             ccccCCC-----cCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6778888     999999999999999999999999999 99999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.48  E-value=5.4e-14  Score=65.00  Aligned_cols=42  Identities=24%  Similarity=0.237  Sum_probs=38.4

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      ++.|.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            4 GSSGMGE-----KTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCC-----CCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             cCccCCC-----cCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            6777777     899999999999999999999999998 99999887

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.48  E-value=6.3e-14  Score=64.74  Aligned_cols=42  Identities=26%  Similarity=0.302  Sum_probs=38.7

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            4 GSSGTGE-----KRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCTTS-----CCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             ccCCCCC-----cCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6777777     999999999999999999999999999 99999887

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=7e-14  Score=64.56  Aligned_cols=42  Identities=26%  Similarity=0.351  Sum_probs=38.6

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            4 GSSGTGE-----KPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCC-----CSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cccCCCC-----CCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6777787     899999999999999999999999999 99999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=6.8e-14  Score=64.60  Aligned_cols=42  Identities=26%  Similarity=0.375  Sum_probs=38.7

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..|.++     ++|.|++|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~H~~~-----~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            4 GSSGTGE-----KPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCSSC-----CSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCC-----CCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6777777     899999999999999999999999999 99999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=6.3e-14  Score=64.79  Aligned_cols=42  Identities=24%  Similarity=0.366  Sum_probs=38.4

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      ++.|.++     ++|.|+.|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            4 GSSGTGG-----KHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSSSS-----CCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccCCC-----CCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6677777     899999999999999999999999999 99999887

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=7.1e-14  Score=63.99  Aligned_cols=42  Identities=31%  Similarity=0.330  Sum_probs=38.3

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      ++.+.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.|
T Consensus         2 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            2 SSGSSGE-----KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCSSC-----CCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCcCCC-----cCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5667777     899999999999999999999999999 99999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=5.4e-14  Score=64.97  Aligned_cols=42  Identities=29%  Similarity=0.371  Sum_probs=38.9

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..|.++     ++|.|+.|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            4 GSSGTGE-----RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSCC-----CSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCC-----CCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6778888     999999999999999999999999999 99999987

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.48  E-value=2.6e-14  Score=73.97  Aligned_cols=53  Identities=26%  Similarity=0.536  Sum_probs=49.3

Q ss_pred             eeeC--CCCcccccchhhHHHHHhhhCC-CcccCCC--CCCcccChHHHHHHHHccCCC
Q psy11352         51 FATC--FVCGKQLSNQYNLRVHMETHQN-AFYACSS--CSHVSRSRDALRKHVSYRHPH  104 (107)
Q Consensus        51 ~~~C--~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~--C~~~f~~~~~l~~H~~~~H~~  104 (107)
                      +|.|  +.|++.|.....|..|+++|.+ +||.|+.  |++.|.....|..|+++ |++
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~   58 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAG   58 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHH-HHS
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHH-hCC
Confidence            5899  9999999999999999999999 9999988  99999999999999997 543

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=5.4e-14  Score=64.94  Aligned_cols=42  Identities=24%  Similarity=0.283  Sum_probs=38.6

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..+.++     ++|.|++|++.|.....|..|+++|++ +||.|+.|
T Consensus         4 ~~~H~~~-----~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            4 GSSGTGE-----KPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             SSCCCCC-----CSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCC-----CCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6677777     899999999999999999999999999 99999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=6.4e-14  Score=64.74  Aligned_cols=42  Identities=24%  Similarity=0.296  Sum_probs=38.0

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..|.++     ++|.|++|++.|.....|..|+++|++ +||.|+.|
T Consensus         4 ~~~H~~~-----~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            4 GSSGTGE-----KPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSS-----CSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCC-----CCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6677777     899999999999999999999999998 99999887

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=8.2e-14  Score=64.35  Aligned_cols=42  Identities=24%  Similarity=0.298  Sum_probs=38.9

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      ++.|.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            4 GSSGSGE-----KPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCSCCC-----CSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             ccccCCC-----cCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            6777777     899999999999999999999999999 99999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=7.3e-14  Score=64.53  Aligned_cols=42  Identities=24%  Similarity=0.258  Sum_probs=38.6

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      ++.|.++     ++|.|++|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            4 GSSGTGE-----KPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCS-----SSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             ccCCCCC-----CCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            6677777     899999999999999999999999999 99999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=6e-14  Score=64.79  Aligned_cols=42  Identities=26%  Similarity=0.286  Sum_probs=38.2

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      ++.|.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            4 GSSGTGE-----KLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCC-----CCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             cccCCCC-----CCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            6777777     899999999999999999999999998 99999887

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=7e-14  Score=64.60  Aligned_cols=42  Identities=24%  Similarity=0.267  Sum_probs=38.4

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            4 GSSGTGE-----KPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCC-----CCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CcCCCCC-----CCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6677777     899999999999999999999999998 99999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=5.6e-14  Score=64.92  Aligned_cols=42  Identities=24%  Similarity=0.284  Sum_probs=39.1

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            4 GSSGTGE-----KPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCC-----SSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCCCCC-----CCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6778888     999999999999999999999999999 99999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.47  E-value=7.4e-14  Score=64.54  Aligned_cols=42  Identities=29%  Similarity=0.358  Sum_probs=38.9

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      ++.|.++     ++|.|+.|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            4 GSSGTGE-----KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCC-----CSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCC-----CCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6777888     899999999999999999999999999 99999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=7e-14  Score=64.59  Aligned_cols=42  Identities=24%  Similarity=0.332  Sum_probs=38.8

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..+.++     ++|.|++|++.|.....|..|+++|++ +||.|+.|
T Consensus         4 ~~~H~~~-----~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            4 GSSGSGE-----KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             TTCCCCC-----CSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             ccCCCCC-----CCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6778888     899999999999999999999999999 99999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.47  E-value=9.4e-14  Score=64.12  Aligned_cols=42  Identities=24%  Similarity=0.218  Sum_probs=38.8

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      ++.|.++     ++|.|+.|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            4 GSSGTGE-----KPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCC-----CSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCC-----cCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            6777888     899999999999999999999999999 99999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=8.3e-14  Score=64.31  Aligned_cols=42  Identities=29%  Similarity=0.384  Sum_probs=38.6

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.|
T Consensus         4 ~~~H~~~-----~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            4 GSSGSGE-----KSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCC-----SSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             cccCCCC-----CCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6777777     899999999999999999999999999 99999887

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=6.9e-14  Score=64.58  Aligned_cols=42  Identities=29%  Similarity=0.308  Sum_probs=37.9

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..|.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.|
T Consensus         4 ~~~H~~~-----~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            4 GSSGTGE-----KPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCSCCCC-----CSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             ccccCCC-----CCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6677777     899999999999999999999999998 99999887

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=8.6e-14  Score=64.29  Aligned_cols=42  Identities=24%  Similarity=0.241  Sum_probs=38.6

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..+.++     ++|.|++|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            4 GSSGTGE-----KPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSCC-----CSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCC-----cCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6677777     899999999999999999999999999 99999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.47  E-value=1e-13  Score=64.05  Aligned_cols=42  Identities=26%  Similarity=0.288  Sum_probs=38.8

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      ++.+.++     ++|.|++|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~h~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            4 GSSGAGV-----NPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CCSSCCC-----CSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCC-----CCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6677777     899999999999999999999999999 99999987

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=6e-14  Score=64.82  Aligned_cols=42  Identities=24%  Similarity=0.285  Sum_probs=38.7

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..+.++     ++|.|++|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~H~~~-----~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            4 GSSGTGE-----KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSC-----CSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCC-----CCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6677777     899999999999999999999999999 99999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=7.8e-14  Score=64.43  Aligned_cols=42  Identities=29%  Similarity=0.324  Sum_probs=39.0

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      ++.|.++     ++|.|+.|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~H~~~-----~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            4 GSSGSGE-----KPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCSS-----CCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCccCCC-----cCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            6677878     999999999999999999999999999 99999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=8.6e-14  Score=64.31  Aligned_cols=42  Identities=24%  Similarity=0.267  Sum_probs=38.6

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      ++.+.++     ++|.|+.|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~h~~~-----k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            4 GSSGSVE-----KPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CSCCCCC-----SSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCC-----CCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6677777     899999999999999999999999999 99999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=1.1e-13  Score=63.92  Aligned_cols=42  Identities=21%  Similarity=0.234  Sum_probs=38.6

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      ++.+.++     ++|.|++|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            4 GSSGSGE-----KPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCCC-----CSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCC-----CCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            6677777     899999999999999999999999999 99999987

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.47  E-value=8.2e-14  Score=65.00  Aligned_cols=37  Identities=27%  Similarity=0.508  Sum_probs=35.8

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSH   86 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~   86 (107)
                      ++|.|++|++.|.....|..|+++|++ +||.|++|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A           11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             cCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            899999999999999999999999999 9999999986

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.1e-13  Score=63.86  Aligned_cols=42  Identities=19%  Similarity=0.146  Sum_probs=38.7

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..+.++     ++|.|++|++.|.....|..|+++|++ +||.|+.|
T Consensus         4 ~~~H~~~-----~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            4 GSSGSRE-----KSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             SCCSSCC-----CCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             ccccCCC-----CCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6677777     899999999999999999999999999 99999987

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=2.6e-15  Score=75.87  Aligned_cols=58  Identities=19%  Similarity=0.190  Sum_probs=54.4

Q ss_pred             CcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCCC
Q psy11352          9 TLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQNA   77 (107)
Q Consensus         9 ~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~k   77 (107)
                      ..++|.|+.|   ++.|.....|..|   +..+.++     ++|.|++|++.|.....|..|+++|++.
T Consensus        11 ~~k~~~C~~C---~k~f~~~~~L~~H---~~~h~~~-----~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A           11 GEKPYGCVEC---GKAFSRSSILVQH---QRVHTGE-----KPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             TCCCEECSSS---CCEESSHHHHHHH---HHGGGCS-----CCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             CCCCccCCCC---CCccCCHHHHHHH---HHhcCCC-----CCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            4789999999   9999999999999   8888888     9999999999999999999999999873

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=8.2e-14  Score=64.35  Aligned_cols=42  Identities=26%  Similarity=0.348  Sum_probs=38.1

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      ++.|.++     ++|.|++|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            4 GSSGTGE-----KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCC-----CSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCcCCC-----CCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6677777     899999999999999999999999998 99999887

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1.2e-13  Score=63.85  Aligned_cols=42  Identities=26%  Similarity=0.339  Sum_probs=37.7

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..|.++     ++|.|+.|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            4 GSSGTGE-----KPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSSCC-----CSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCC-----CCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6677777     899999999999999999999999998 99999875

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1.2e-13  Score=63.82  Aligned_cols=42  Identities=24%  Similarity=0.395  Sum_probs=39.0

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      ++.+.++     ++|.|++|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~h~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            4 GSSGSGE-----KPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCSC-----CSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCC-----CCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            6677777     999999999999999999999999999 99999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1e-13  Score=64.02  Aligned_cols=42  Identities=31%  Similarity=0.388  Sum_probs=37.9

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..+.++     ++|.|++|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            4 GSSGAGE-----KPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             SSCSSCC-----CSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CcCcCCC-----CCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            6677777     899999999999999999999999998 99999887

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=7.3e-14  Score=64.49  Aligned_cols=42  Identities=26%  Similarity=0.292  Sum_probs=37.7

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      ++.+.++     ++|.|++|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            4 GSSGTGE-----KPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSSC-----CTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CcCCCCC-----cCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6677777     889999999999999999999999998 89999887

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=2.9e-15  Score=79.91  Aligned_cols=58  Identities=21%  Similarity=0.272  Sum_probs=53.8

Q ss_pred             cccccCCCCCCCCCcc-CCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHH-HhhhCCCcc
Q psy11352         10 LHFLISDHCLTSPLSS-SIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVH-METHQNAFY   79 (107)
Q Consensus        10 ~~~~~C~~C~~~~~~~-~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~k~~   79 (107)
                      .++|.|+.|   ++.| .....|..|   +..| ++     ++|.|++|++.|.....|..| +++|+++||
T Consensus        32 ~~~~~C~~C---~k~F~~~~~~L~~H---~~~h-~~-----k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           32 KGSVSCPTC---QAVGRKTIEGLKKH---MENC-KQ-----EMFTCHHCGKQLRSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             TSCEECTTT---CSCEESSHHHHHHH---HHHH-CC-----CCCCCSSSCCCCSSHHHHHHHHHHHTCCCSS
T ss_pred             CCCcCCCCC---CCCcccCHHHHHHH---HHHH-CC-----CCeECCCCCCeeCCHHHHHHHhHHhcCCCCC
Confidence            678999999   9999 999999999   8888 88     999999999999999999999 899988654

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.45  E-value=5.2e-15  Score=71.40  Aligned_cols=54  Identities=20%  Similarity=0.309  Sum_probs=51.3

Q ss_pred             cccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         12 FLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        12 ~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ||.|+.|   ++.|.....|..|   +..+.++     ++|.|+.|++.|.....|..|+++|.+
T Consensus         1 p~~C~~C---~~~f~~~~~l~~H---~~~h~~~-----~~~~C~~C~~~f~~~~~l~~H~~~h~~   54 (57)
T 1bbo_A            1 KYICEEC---GIRXKKPSMLKKH---IRTHTDV-----RPYHCTYCNFSFKTKGNLTKHMKSKAH   54 (57)
T ss_dssp             CCBCTTT---CCBCSSHHHHHHH---HHHTSSC-----CCEECSSSSCEESSHHHHHHHHHSSSS
T ss_pred             CCcCCCC---cCcCCCHHHHHHH---HHhcCCC-----CCccCCCCCchhcCHHHHHHHHHHhcc
Confidence            6899999   9999999999999   8888888     999999999999999999999999886

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=1e-13  Score=64.00  Aligned_cols=42  Identities=26%  Similarity=0.388  Sum_probs=38.6

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      ++.+.++     ++|.|++|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~h~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            4 GSSGTGE-----KPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCSSC-----CSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CcCCCCC-----CCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            6677777     899999999999999999999999999 99999987

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.44  E-value=7.3e-15  Score=76.64  Aligned_cols=57  Identities=14%  Similarity=0.215  Sum_probs=52.6

Q ss_pred             CcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHH-hhhCC
Q psy11352          9 TLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHM-ETHQN   76 (107)
Q Consensus         9 ~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~   76 (107)
                      ..++|.|++|   ++.|.....|..|   ++.|.++     ++|.|++|++.|.....|..|+ ++|.+
T Consensus        25 ~~~~h~C~~C---gk~F~~~~~L~~H---~~~H~~~-----k~~~C~~C~k~F~~~~~L~~H~~~~H~~   82 (85)
T 2lv2_A           25 SAECHLCPVC---GESFASKGAQERH---LRLLHAA-----QVFPCKYCPATFYSSPGLTRHINKCHPS   82 (85)
T ss_dssp             CCTTEECTTS---CCEESSHHHHHHH---HHTTSCS-----SSEECTTSSCEESSHHHHHHHHHTTCTT
T ss_pred             CCCCEECCCC---CCCcCcHHHHhhh---hhhccCC-----CccCCCCCCCEeCCHHHHHHhCcccCcC
Confidence            3678999999   9999999999999   9999999     9999999999999999999997 46765

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.44  E-value=1.3e-13  Score=63.43  Aligned_cols=42  Identities=19%  Similarity=0.356  Sum_probs=38.2

Q ss_pred             CCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCC
Q psy11352         39 GTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCS   85 (107)
Q Consensus        39 ~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~   85 (107)
                      ..|.++     ++|.|++|++.|.....|..|+++|++ ++|.|+.||
T Consensus         3 ~~h~~~-----k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGE-----KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSC-----CSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCcCCC-----CCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            345666     899999999999999999999999999 999999996

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.44  E-value=3.5e-14  Score=69.85  Aligned_cols=54  Identities=11%  Similarity=0.212  Sum_probs=46.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHH
Q psy11352         31 SKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALR   95 (107)
Q Consensus        31 l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~   95 (107)
                      |..|   +..|.++     ++|.|+.|++.|.....|.   ++|.+ +||.|+.||+.|....++.
T Consensus         2 L~~h---~~~H~~~-----k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            2 IETD---ERDSTNR-----ASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCC---SSSCCSS-----SEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCS
T ss_pred             hhhH---HHHcCCC-----CCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcccc
Confidence            4567   7788888     9999999999999988876   78998 9999999999998876654

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.44  E-value=2.7e-15  Score=72.43  Aligned_cols=56  Identities=18%  Similarity=0.135  Sum_probs=49.6

Q ss_pred             cccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         10 LHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        10 ~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      .++|.|+.|   ++.|.....|..|   +..+.++     ++|.|+.|++.|.....|..|+++|.+
T Consensus         2 ~~~~~C~~C---~~~f~~~~~l~~H---~~~h~~~-----~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            2 SSSRECSYC---GKFFRSNYYLNIH---LRTHTGE-----KPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ---CBCTTT---CCBCSCHHHHHHH---HHHHHCC-----CCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCccCCCC---cchhCChHHHHHH---HHHcCCC-----CCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            579999999   9999999999999   8888888     999999999999999999999998763

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=1.1e-13  Score=63.98  Aligned_cols=42  Identities=21%  Similarity=0.290  Sum_probs=38.5

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      ++.+.++     ++|.|+.|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~h~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            4 GSSGTGE-----KPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CCCCSSC-----CSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CcCCCCC-----CCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6677777     899999999999999999999999998 99999987

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=2e-13  Score=63.26  Aligned_cols=42  Identities=24%  Similarity=0.272  Sum_probs=38.3

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHh-hhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHME-THQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~-k~~~C~~C   84 (107)
                      ++.|.++     ++|.|+.|++.|.....|..|++ +|++ +||.|+.|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            4 GSSGTGK-----KPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCC-----CSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccCCC-----CCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            6777777     89999999999999999999999 9998 99999887

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=1.2e-14  Score=76.97  Aligned_cols=62  Identities=19%  Similarity=0.139  Sum_probs=54.8

Q ss_pred             ccccCCCCCCCCCccCCCCCCCCCCCCCCC-CCCCCCCCCCe--------eeCCCCcccccchhhHHHHHhhhCC-Cccc
Q psy11352         11 HFLISDHCLTSPLSSSIPGSSKTKASGSGT-TGGSSNHSKLF--------ATCFVCGKQLSNQYNLRVHMETHQN-AFYA   80 (107)
Q Consensus        11 ~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~-~~~~~~~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~   80 (107)
                      ..|.|+.|   ++.|.....|..|   +.. |.+.     ++        |.|+.|++.|.....|..|+++|++ +||.
T Consensus        24 ~~~~C~~C---~k~f~~~~~L~~H---~~~~H~~~-----~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   92 (95)
T 2ej4_A           24 LSRPKKSC---DRTFSTMHELVTH---VTMEHVGG-----PEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGP   92 (95)
T ss_dssp             SSSSCCCC---CCCCSSHHHHHHH---HHHTTTCC-----TTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCS
T ss_pred             CCCccccc---ccccCCHHHHHHH---HHHhccCC-----CCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCC
Confidence            34679999   9999999999999   775 7766     44        8999999999999999999999999 9999


Q ss_pred             CCC
Q psy11352         81 CSS   83 (107)
Q Consensus        81 C~~   83 (107)
                      |+.
T Consensus        93 C~~   95 (95)
T 2ej4_A           93 SSG   95 (95)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            963

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=2.5e-13  Score=62.65  Aligned_cols=42  Identities=26%  Similarity=0.266  Sum_probs=38.3

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~h~~~-----~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGE-----KPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSTTC-----CSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCC-----CCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            5567777     899999999999999999999999999 99999987

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=3.4e-13  Score=62.23  Aligned_cols=42  Identities=24%  Similarity=0.339  Sum_probs=38.2

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      +..|.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            4 GSSGSGE-----KPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCC-----CSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCC-----CCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6677777     899999999999999999999999999 99999865

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=2.3e-15  Score=80.43  Aligned_cols=63  Identities=13%  Similarity=0.109  Sum_probs=57.0

Q ss_pred             CcccccCCCCCCCCCccC-CCCCCCCCCCCCCCCCC-CCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCC
Q psy11352          9 TLHFLISDHCLTSPLSSS-IPGSSKTKASGSGTTGG-SSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACS   82 (107)
Q Consensus         9 ~~~~~~C~~C~~~~~~~~-~~~~l~~h~~~~~~~~~-~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~   82 (107)
                      ..++|.|+.|   ++.|. ....|..|   +..|.+ +     ++|.|++|++.|.....|..|+++|++ +|+...
T Consensus        21 ~~~~~~C~~C---~k~f~~~~~~L~~H---~~~h~~~~-----~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~~~   86 (98)
T 2gqj_A           21 ERGEAVCPTC---NVVTRKTLVGLKKH---MEVCQKLQ-----DALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDAE   86 (98)
T ss_dssp             TTSCCCCTTT---CCCCSSCSHHHHHH---HHHHHHHH-----HHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSCCC
T ss_pred             cCCCcCCCCC---CCChhhhHHHHHHH---HHHHcCCC-----CCEECCCCCCccCCHHHHHHHHHHHcCCCCCCCC
Confidence            4789999999   99999 99999999   888877 7     899999999999999999999999998 775543

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=1.6e-14  Score=70.38  Aligned_cols=55  Identities=13%  Similarity=0.210  Sum_probs=51.2

Q ss_pred             ccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHH-hhhCC
Q psy11352         11 HFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHM-ETHQN   76 (107)
Q Consensus        11 ~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~   76 (107)
                      +||.|+.|   ++.|.....|..|   +..+.++     ++|.|+.|++.|.....|..|+ ++|.+
T Consensus         1 k~~~C~~C---~~~f~~~~~l~~H---~~~h~~~-----~~~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            1 RSFVCEVC---TRAFARQEHLKRH---YRSHTNE-----KPYPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CCBCCTTT---CCCBSCHHHHHHH---HHTTTSS-----CSEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcCcCCCC---ccccCCHHHHHHH---HHHhCCC-----CCccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            58999999   9999999999999   8889888     9999999999999999999997 67876

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=1.4e-13  Score=63.57  Aligned_cols=42  Identities=31%  Similarity=0.377  Sum_probs=38.2

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      ++.|.++     ++|.|++|++.|.....|..|+++|++ +||.|++|
T Consensus         4 ~~~h~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGE-----KPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCC-----CTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCC-----CCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5567777     899999999999999999999999998 99999987

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.40  E-value=6.2e-13  Score=61.35  Aligned_cols=41  Identities=27%  Similarity=0.311  Sum_probs=37.0

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      +..|.++     ++|.|+.|++.|.....|..|+++|++ +||.|++
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            4 GSSGTGE-----KPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCC-----CSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCC-----CCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6777777     899999999999999999999999998 9999874

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=6.8e-13  Score=61.18  Aligned_cols=41  Identities=27%  Similarity=0.348  Sum_probs=36.8

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      ++.|.++     ++|.|+.|++.|.....|..|+++|++ +||.|++
T Consensus         4 ~~~H~~~-----~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            4 GSSGTGE-----KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSC-----CSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCC-----cCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6677777     899999999999999999999999998 9999874

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=8.3e-13  Score=60.85  Aligned_cols=41  Identities=27%  Similarity=0.365  Sum_probs=36.6

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|++
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            4 GSSGTGE-----KPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCC-----CCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             cCCCCCC-----CCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            6677777     899999999999999999999999998 8999874

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=9.1e-13  Score=60.77  Aligned_cols=41  Identities=24%  Similarity=0.353  Sum_probs=36.8

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      +..|.++     ++|.|+.|++.|.....|..|+++|++ +||.|++
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            4 GSSGTGQ-----RPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCS-----SSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             ccccCCC-----cCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6777777     899999999999999999999999998 9999874

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=4.3e-13  Score=68.34  Aligned_cols=67  Identities=19%  Similarity=0.236  Sum_probs=58.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         28 PGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        28 ~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      ...|..|   +..+.+.     +++.|..|++.|. ...|..|+ .|.+ +|+.|+.|++.|.. ..|..|+++ |++++
T Consensus         2 ~~~L~~H---~~~~c~~-----r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~~-~~l~~H~~~-c~~~~   69 (75)
T 2d9k_A            2 SSGSSGH---EETECPL-----RLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVLV-KDLKTHPEV-CGREG   69 (75)
T ss_dssp             CCCCSCC---CCCCCCC-----CCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEET-TGGGTHHHH-BTTBS
T ss_pred             chHHHhh---CcccCCC-----cccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCcH-HHHHHHHHH-ccCCc
Confidence            3567888   8888888     9999999999995 88999999 8898 99999999998874 889999996 88764

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.38  E-value=1.6e-14  Score=71.69  Aligned_cols=57  Identities=14%  Similarity=0.137  Sum_probs=51.6

Q ss_pred             CcccccCCCCCCCCCccCCCCCCCCCCCCCCC-C-CCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352          9 TLHFLISDHCLTSPLSSSIPGSSKTKASGSGT-T-GGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus         9 ~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~-~-~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      +.+||.|+.|   ++.|.....|..|   +.. + .++     ++|.|+.|++.|.....|..|+++|.+
T Consensus         7 ~~k~~~C~~C---~k~f~~~~~l~~H---~~~~H~~~~-----~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            7 GEHTYRCKVC---SRVYTHISNFCRH---YVTSHKRNV-----KVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             ETTEEECTTT---CCEESSHHHHHHH---HHHHSSSSC-----CCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             CCcceECCCC---cchhCCHHHHHHH---HHHHcCCCC-----cCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            4789999999   9999999999999   776 6 567     899999999999999999999998764

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=7.8e-13  Score=61.00  Aligned_cols=41  Identities=24%  Similarity=0.357  Sum_probs=35.8

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            4 GSSGTGE-----RHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCC-----CCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             ccCcCCC-----CCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6677777     889999999999999999999999998 8999864

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=8.3e-13  Score=60.90  Aligned_cols=41  Identities=24%  Similarity=0.359  Sum_probs=35.0

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            4 GSSGSGE-----KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCS-----SSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             ccCCCCC-----cCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6667777     889999999999999999999999988 8998864

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=9.3e-13  Score=60.67  Aligned_cols=41  Identities=24%  Similarity=0.297  Sum_probs=35.9

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      ++.+.++     ++|.|+.|++.|.....|..|+++|++ +||.|++
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            4 GSSGTGE-----KPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCSC-----CSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCC-----cCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            6677777     889999999999999999999999998 8999864

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=7.8e-13  Score=60.98  Aligned_cols=41  Identities=24%  Similarity=0.281  Sum_probs=34.8

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|++
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            4 GSSGTGE-----KPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCC-----CSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CcCCCCC-----cCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            6667777     889999999999999999999988888 8888864

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=9.2e-13  Score=60.69  Aligned_cols=41  Identities=29%  Similarity=0.332  Sum_probs=35.6

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|++
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            4 GSSGTGE-----KPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCC-----CSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCC-----CCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6667777     889999999999999999999999998 8998864

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.3e-12  Score=60.19  Aligned_cols=41  Identities=24%  Similarity=0.367  Sum_probs=36.0

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      ++.|.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.
T Consensus         4 ~~~H~~~-----~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            4 GSSGTGE-----RHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCSCSSC-----CCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CcccCCC-----CCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            6677777     889999999999999999999999998 8999864

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=9.8e-13  Score=60.59  Aligned_cols=41  Identities=27%  Similarity=0.345  Sum_probs=34.9

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            4 GSSGTGE-----KPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCSSC-----CSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             ccCCCCC-----CCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6667777     889999999999999999999999988 8888864

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=9.7e-13  Score=60.64  Aligned_cols=41  Identities=27%  Similarity=0.360  Sum_probs=34.9

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|++
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            4 GSSGTGE-----NPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCSC-----CSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCC-----CCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6667777     889999999999999999999999988 8898864

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.2e-12  Score=60.23  Aligned_cols=41  Identities=27%  Similarity=0.328  Sum_probs=36.0

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.
T Consensus         4 ~~~H~~~-----~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            4 GSSGTGE-----KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCC-----CCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             ccCCCCC-----CCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6677777     899999999999999999999999998 8999864

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=7.9e-13  Score=60.94  Aligned_cols=41  Identities=27%  Similarity=0.321  Sum_probs=33.8

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      ++.|.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            4 GSSGTGG-----KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSSSS-----CSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             ccccCCC-----CCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5667777     888888888888888888888888888 8888864

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.3e-12  Score=60.23  Aligned_cols=41  Identities=24%  Similarity=0.417  Sum_probs=36.5

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      +..|.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            4 GSSGTGE-----KPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCSC-----CCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             ccccCCC-----CCEECcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            6777777     899999999999999999999999998 8999863

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.36  E-value=8.5e-14  Score=71.05  Aligned_cols=64  Identities=13%  Similarity=0.116  Sum_probs=53.8

Q ss_pred             ccccCCC-CcccccCCCCCCCCCccCCCCCCCCCCCCCC-CCCC-CCCCCCCeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352          2 NFHYKPS-TLHFLISDHCLTSPLSSSIPGSSKTKASGSG-TTGG-SSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus         2 ~~h~~~~-~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~-~~~~-~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ..|++.. .++||.|+.|   ++.|.....|..|   +. .+.. .     ++|.|+.|++.|.....|..|++++.+
T Consensus         4 ~~H~~~H~~~k~~~C~~C---~k~f~~~~~L~~H---~~~~h~~~~-----~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A            4 GSSGRTHSGEKPYECYIC---HARFTQSGTMKMH---ILQKHTENV-----AKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CCCCCCCSCCCSEECTTT---CCEESCHHHHHHH---HHHHSSSSC-----SSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             CccccccCCCCCeECCCc---CchhCCHHHHHHH---HHHhcCCCC-----CccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            4466644 4889999999   9999999999999   75 4554 3     689999999999999999999998654

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.2e-12  Score=60.37  Aligned_cols=41  Identities=29%  Similarity=0.410  Sum_probs=34.8

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            4 GSSGMGE-----KCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCC-----CCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             ccccCCC-----CCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6667777     889999999999999999999999988 8888864

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=8.8e-13  Score=60.79  Aligned_cols=41  Identities=24%  Similarity=0.293  Sum_probs=33.8

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|++
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            4 GSSGTGE-----KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCC-----CTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CcCCCCC-----cCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            5667777     888888888888888888888888888 8888864

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.36  E-value=1.3e-12  Score=59.03  Aligned_cols=40  Identities=25%  Similarity=0.341  Sum_probs=30.9

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACS   82 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~   82 (107)
                      ++.+.++     ++|.|+.|++.|.....|..|+++|++ +||.|+
T Consensus         2 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            2 SSGSSGE-----NPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CSSSSSC-----CSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCC-----CCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            4456666     778888888888888888888888887 788774

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=4e-13  Score=60.74  Aligned_cols=39  Identities=21%  Similarity=0.278  Sum_probs=26.2

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYAC   81 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C   81 (107)
                      ++.+.++     ++|.|+.|++.|.....|..|+++|++ +||.|
T Consensus         2 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            2 SSGSSGE-----KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             CSSSCSC-----CSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CcCcCCC-----CCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            3445555     667777777777777777777777776 66665

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.2e-12  Score=60.37  Aligned_cols=41  Identities=27%  Similarity=0.323  Sum_probs=34.2

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      ++.|.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            4 GSSGTGE-----KPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCS-----CCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             ccccCCC-----CCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6667777     888899999999888889999888888 8888863

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=1.6e-12  Score=59.33  Aligned_cols=40  Identities=15%  Similarity=0.145  Sum_probs=33.0

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACS   82 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~   82 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|+
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            4 GSSGHTR-----KRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CSCCCCC-----SSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             ccccCCC-----CCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            6667777     888888888888888888888888888 888874

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.4e-12  Score=60.16  Aligned_cols=41  Identities=24%  Similarity=0.357  Sum_probs=35.8

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      ++.|.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            4 GSSGAGK-----KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSCCSS-----CCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCC-----CCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6667777     889999999999999999999999998 8999864

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=2.2e-13  Score=61.64  Aligned_cols=32  Identities=28%  Similarity=0.374  Sum_probs=17.5

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-CcccC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AFYAC   81 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C   81 (107)
                      ++|.|+.|++.|.....|..|+++|++ +||.|
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A           10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            555555555555555555555555555 55544

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.1e-12  Score=60.39  Aligned_cols=41  Identities=24%  Similarity=0.308  Sum_probs=36.4

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|++
T Consensus         4 ~~~H~~~-----~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            4 GSSGTGE-----KPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSCC-----CSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CcCcCCC-----cCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6677777     899999999999999999999999998 8999874

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.4e-12  Score=60.16  Aligned_cols=41  Identities=27%  Similarity=0.421  Sum_probs=36.6

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      +..|.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            4 GSSGTGE-----KPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CCCCSSC-----CSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             cccCCCC-----CCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6777777     899999999999999999999999998 8999863

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.35  E-value=3.3e-13  Score=61.05  Aligned_cols=37  Identities=24%  Similarity=0.346  Sum_probs=33.9

Q ss_pred             HHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         70 HMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        70 H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      |+++|++ +||.|++|++.|.+.+.|..|+++ |++++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   38 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRT-HAGESG   38 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGG-GCCCCS
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHh-cCCCCC
Confidence            5678888 999999999999999999999996 999886

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.6e-12  Score=59.27  Aligned_cols=40  Identities=25%  Similarity=0.334  Sum_probs=31.4

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACS   82 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~   82 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|+
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            4 GSSGTGE-----KPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             SSCCSCC-----CSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             ccCCCCC-----CCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            5566666     788888888888888888888888887 788774

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.35  E-value=5e-13  Score=63.81  Aligned_cols=52  Identities=19%  Similarity=0.236  Sum_probs=47.7

Q ss_pred             CCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-Cccc
Q psy11352         21 SPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYA   80 (107)
Q Consensus        21 ~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~   80 (107)
                      +++.|.....|..|   +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.
T Consensus         2 ~~k~~~~~~~l~~h---~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            2 KAKRAKHPPGTEKP---RSRSQSE-----QPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCCSCSSCCCCC---HHHHTSS-----CCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             CccccCCCcchhhH---HHhcCCC-----CCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            47789999999999   8889988     999999999999999999999999998 8873

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.1e-12  Score=60.49  Aligned_cols=41  Identities=27%  Similarity=0.318  Sum_probs=34.8

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      ++.|.++     ++|.|++|++.|.....|..|+++|++ +||.|++
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            4 GSSGTGE-----KPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             SSSCSSC-----CSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCC-----cccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            5667777     889999999999999999999999988 8898864

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=1.9e-12  Score=58.91  Aligned_cols=40  Identities=18%  Similarity=0.208  Sum_probs=34.1

Q ss_pred             CCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         39 GTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        39 ~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      +.|.++     ++|.|+.|++.|.....|..|+++|++ +||.|++
T Consensus         3 ~~h~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGN-----GAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SCCSSS-----CCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             cCcCCC-----CCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            345566     889999999999999999999999998 8999864

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.7e-12  Score=59.87  Aligned_cols=41  Identities=22%  Similarity=0.221  Sum_probs=34.0

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      ++.|.++     ++|.|++|++.|.....|..|+++|++ +||.|+.
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            4 GSSGSGK-----KPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCSCCCS-----CSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCcCCC-----CCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667777     888899999999888889999888888 8888863

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=2.1e-12  Score=59.54  Aligned_cols=41  Identities=24%  Similarity=0.240  Sum_probs=36.2

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      ++.|.++     ++|.|+.|++.|.....|..|+++|++ +||.|++
T Consensus         4 ~~~h~~~-----k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            4 GSSGHGE-----RGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCC-----SSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCC-----CCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            5667777     899999999999999999999999998 9999863

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.3e-12  Score=59.59  Aligned_cols=40  Identities=23%  Similarity=0.331  Sum_probs=28.2

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACS   82 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~   82 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|+
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            4 GSSGTGM-----KPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CCCSSSS-----SSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CcCCCCC-----cCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            5556666     677777777777777777777777777 777763

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4.6e-13  Score=61.76  Aligned_cols=38  Identities=18%  Similarity=0.358  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRV-HTGEKP   40 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGG-GCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHH-cCCCCC
Confidence            47788998 999999999999999999999996 999886

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4.6e-13  Score=61.78  Aligned_cols=38  Identities=21%  Similarity=0.378  Sum_probs=34.8

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~   40 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGI-HTGEKP   40 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTT-TTTSSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHh-hCCCCC
Confidence            47788998 999999999999999999999996 999886

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4.5e-13  Score=61.16  Aligned_cols=38  Identities=24%  Similarity=0.317  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   40 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRT-HTGESG   40 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTT-TCCSSS
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhh-cCCCCC
Confidence            47788998 999999999999999999999996 999886

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=5.3e-13  Score=61.54  Aligned_cols=38  Identities=21%  Similarity=0.391  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~   40 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGI-HTGEKP   40 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGG-TSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhh-cCCCCC
Confidence            47788998 999999999999999999999996 999886

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4.4e-13  Score=61.32  Aligned_cols=39  Identities=26%  Similarity=0.285  Sum_probs=26.4

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYAC   81 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C   81 (107)
                      +..+.++     ++|.|++|++.|.....|..|+++|++ +||.|
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            4 GSSGSGE-----KPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCC-----CSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CcccCCC-----cCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            5556666     667777777777777777777777766 66654

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=6.3e-13  Score=61.33  Aligned_cols=38  Identities=16%  Similarity=0.233  Sum_probs=34.7

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRV-HTGERS   40 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHH-CSSCCS
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHH-hCCCCC
Confidence            36788998 999999999999999999999996 999886

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4.9e-13  Score=61.66  Aligned_cols=38  Identities=24%  Similarity=0.400  Sum_probs=35.1

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKI-HTKQKP   40 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHH-TSCCCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHH-cCCCCC
Confidence            47888999 999999999999999999999996 999886

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=5.2e-13  Score=61.54  Aligned_cols=38  Identities=16%  Similarity=0.190  Sum_probs=35.0

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRI-HTGENP   40 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTT-TTTSCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHH-cCCCCC
Confidence            47788999 999999999999999999999996 999886

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=2.4e-12  Score=58.71  Aligned_cols=40  Identities=18%  Similarity=0.253  Sum_probs=31.8

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACS   82 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~   82 (107)
                      +..|.++     ++|.|+.|++.|.....|..|+++|++ +||.|.
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            4 GSSGAGE-----NPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             SCCCSCC-----CSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             ccccCCC-----CCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            5666677     788888888888888888888888887 788773

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=4e-13  Score=62.02  Aligned_cols=38  Identities=21%  Similarity=0.381  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|..|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~   40 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRI-HTGEKP   40 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTT-TSCCCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHH-hCCCCC
Confidence            47788998 999999999999999999999996 999886

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=4e-13  Score=61.98  Aligned_cols=38  Identities=21%  Similarity=0.364  Sum_probs=35.0

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   40 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI-HTGEKP   40 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTT-TTTSCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHH-cCCCCC
Confidence            47788998 999999999999999999999996 999886

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.1e-12  Score=59.52  Aligned_cols=41  Identities=27%  Similarity=0.310  Sum_probs=34.6

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      ++.+.++     ++|.|++|++.|.....|..|+++|++ +||.|+.
T Consensus         4 ~~~h~~~-----k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            4 GSSGTGE-----KPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCS-----SSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCcCCC-----CCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667777     889999999999999999999999988 8888863

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=5.4e-13  Score=60.37  Aligned_cols=32  Identities=19%  Similarity=0.389  Sum_probs=19.2

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-CcccC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AFYAC   81 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C   81 (107)
                      ++|.|++|++.|.....|..|+++|++ +||.|
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A           10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            556666666666666666666666655 55554

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=5.2e-13  Score=61.55  Aligned_cols=38  Identities=21%  Similarity=0.381  Sum_probs=35.0

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   40 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERL-HSGEKP   40 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHH-CCSSSC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHh-cCCCCC
Confidence            47788999 999999999999999999999996 999886

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=5.9e-14  Score=71.80  Aligned_cols=63  Identities=17%  Similarity=0.238  Sum_probs=54.5

Q ss_pred             CCcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCC---CCCCCCCeeeCCCCcccccchhhHHHHHh-hhCC-CcccC
Q psy11352          8 STLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGG---SSNHSKLFATCFVCGKQLSNQYNLRVHME-THQN-AFYAC   81 (107)
Q Consensus         8 ~~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~---~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~-k~~~C   81 (107)
                      .++++|.|+.|   ++.|.....|..|   +..+.+   +     ++|.|+.|++.|.....|..|++ .|.+ ++...
T Consensus         3 ~~~k~~~C~~C---~k~f~~~~~L~~H---~~~h~~~~~~-----~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~   70 (78)
T 2d9h_A            3 SGSSGLQCEIC---GFTCRQKASLNWH---QRKHAETVAA-----LRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ   70 (78)
T ss_dssp             CSCCCEECSSS---CCEESSHHHHHHH---HHHHHHHTTT-----CCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCS
T ss_pred             CCCcCeECCCC---CCeeCCHHHHHHH---HHHhhccCCC-----cccCCCCCCchhCCHHHHHHHHHHhCCCCCCCcc
Confidence            45789999999   9999999999999   887764   6     88999999999999999999995 5666 55543

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=5.1e-13  Score=61.60  Aligned_cols=38  Identities=21%  Similarity=0.391  Sum_probs=34.8

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~   40 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGI-HTGEKP   40 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTT-TSCSCC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHh-cCCCCC
Confidence            46788998 999999999999999999999996 999886

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.32  E-value=4.6e-13  Score=61.78  Aligned_cols=38  Identities=18%  Similarity=0.310  Sum_probs=35.0

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~   40 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNV-HVGEKP   40 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGG-GSSSSC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHH-cCCCCC
Confidence            47788998 999999999999999999999996 999886

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=5.2e-13  Score=61.62  Aligned_cols=38  Identities=16%  Similarity=0.301  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRV-HTGEKP   40 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGG-GTTCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHh-cCCCCC
Confidence            47788998 999999999999999999999996 999886

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.5e-12  Score=59.38  Aligned_cols=40  Identities=25%  Similarity=0.343  Sum_probs=31.0

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACS   82 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~   82 (107)
                      +..|.++     ++|.|++|++.|.....|..|+++|++ +||.|+
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            4 GSSGTGE-----NPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CCSSSSC-----CSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             ccccCCC-----cCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            5666666     778888888888888888888888887 787774

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.32  E-value=4.1e-13  Score=61.96  Aligned_cols=38  Identities=18%  Similarity=0.319  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~   40 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRV-HTGEKP   40 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHH-HSSCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHH-cCCCCC
Confidence            47788998 999999999999999999999996 889886

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=5.3e-13  Score=61.53  Aligned_cols=38  Identities=21%  Similarity=0.354  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRI-HTGENP   40 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGG-GSSSCC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHH-hCCCCC
Confidence            47788998 999999999999999999999996 999886

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=4.9e-13  Score=61.03  Aligned_cols=38  Identities=18%  Similarity=0.283  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   40 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRT-HTGESG   40 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHH-TTTSSC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHH-hCCCCC
Confidence            47788999 999999999999999999999996 999886

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=5.7e-13  Score=61.43  Aligned_cols=38  Identities=21%  Similarity=0.392  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVI-HTGEKP   40 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTT-TCCSCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHH-hCCCCC
Confidence            47788998 999999999999999999999996 999886

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=5.9e-13  Score=61.41  Aligned_cols=38  Identities=18%  Similarity=0.335  Sum_probs=34.8

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRV-HTGEKP   40 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTT-TSSSCC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHH-cCCCCC
Confidence            46788998 999999999999999999999996 999986

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.32  E-value=4.6e-13  Score=61.74  Aligned_cols=38  Identities=21%  Similarity=0.377  Sum_probs=35.0

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRS-HTGVKP   40 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGG-SSSCCC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHH-hCCCCC
Confidence            47788999 999999999999999999999996 999986

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.32  E-value=6.4e-13  Score=60.04  Aligned_cols=39  Identities=28%  Similarity=0.451  Sum_probs=26.9

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYAC   81 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C   81 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|
T Consensus         3 ~~~H~~~-----~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            3 SGSSGGE-----TPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CSCCCSS-----CCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CccCCCC-----CCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            4455555     677777777777777777777777776 67765

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=6.6e-13  Score=61.22  Aligned_cols=38  Identities=18%  Similarity=0.335  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMV-HTAEKP   40 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHH-TTCCCS
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHH-cCCCCC
Confidence            47788998 999999999999999999999996 999886

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=4.7e-13  Score=61.16  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   40 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERT-HARKSG   40 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHH-CCCCCS
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHh-cCCCCC
Confidence            47788998 999999999999999999999996 999886

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.8e-12  Score=59.64  Aligned_cols=41  Identities=27%  Similarity=0.323  Sum_probs=34.6

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            4 GSSGTGE-----KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCSSCCC-----CSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             ccCCCCC-----CCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6667777     889999999999999999999988888 8888863

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=4.6e-13  Score=61.78  Aligned_cols=38  Identities=24%  Similarity=0.393  Sum_probs=35.0

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   40 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRI-HSGKKP   40 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGG-GSSCCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHH-hcCCCC
Confidence            47788999 999999999999999999999996 999886

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.5e-12  Score=58.03  Aligned_cols=37  Identities=19%  Similarity=0.327  Sum_probs=33.8

Q ss_pred             HHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         70 HMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        70 H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      |+++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   38 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKM-HTVKSG   38 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHH-TSCCSS
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHH-hCCCCC
Confidence            5678888 999999999999999999999996 999886

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=6.6e-13  Score=61.26  Aligned_cols=38  Identities=16%  Similarity=0.378  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~   40 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKI-HTGEKP   40 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGG-TSCSSC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHH-hCCCCC
Confidence            37788998 999999999999999999999996 999886

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=8.7e-13  Score=60.80  Aligned_cols=38  Identities=21%  Similarity=0.335  Sum_probs=34.8

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|.....|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   40 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKI-HTGERP   40 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTT-TSCCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHH-hCCCCC
Confidence            47788998 999999999999999999999996 999886

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.31  E-value=5.1e-14  Score=71.12  Aligned_cols=57  Identities=18%  Similarity=0.258  Sum_probs=52.2

Q ss_pred             CCcccccCC--CCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhC
Q psy11352          8 STLHFLISD--HCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQ   75 (107)
Q Consensus         8 ~~~~~~~C~--~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   75 (107)
                      ...++|.|+  .|   ++.|.....|..|   +..+.++     ++|.|+.|++.|.....|..|+++|+
T Consensus        15 ~~~~~~~C~~~~C---~k~f~~~~~l~~H---~~~h~~~-----~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           15 PKMRPYACPVESC---DRRFSRSDELTRH---IRIHTGQ-----KPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCEECSSTTB---CCEESSHHHHHHH---HHHHHCC-----CCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CCCCccCCcCCCC---CCccCCHHHHHHH---HHhhCCC-----CCeECCCCCchhCCHHHHHHHHHhcC
Confidence            357899997  69   9999999999999   8888888     89999999999999999999999874

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1e-12  Score=60.57  Aligned_cols=37  Identities=16%  Similarity=0.306  Sum_probs=34.4

Q ss_pred             HHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         70 HMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        70 H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      |+++|++ +||.|++|++.|...+.|.+|+++ |++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRI-HTGEKP   40 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTT-TTTCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHH-hCCCCC
Confidence            6788998 999999999999999999999996 999886

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=7.4e-13  Score=61.02  Aligned_cols=38  Identities=18%  Similarity=0.360  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   40 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRI-HTGEKP   40 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTT-TTTCSC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHh-cCCCCC
Confidence            47788999 999999999999999999999996 999886

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.7e-12  Score=58.60  Aligned_cols=37  Identities=19%  Similarity=0.414  Sum_probs=34.3

Q ss_pred             HHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         70 HMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        70 H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      |+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   39 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV-HTGSGP   39 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGG-TSCCSC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHH-hCCCCC
Confidence            6778998 999999999999999999999996 999886

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=5.8e-13  Score=61.38  Aligned_cols=38  Identities=18%  Similarity=0.327  Sum_probs=34.8

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRT-HTGEKP   40 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHT-SCSSSS
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHH-hCCCCC
Confidence            46788998 999999999999999999999996 999886

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=7.1e-13  Score=61.11  Aligned_cols=38  Identities=21%  Similarity=0.379  Sum_probs=34.8

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~   40 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRI-HRGEKP   40 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGG-GCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhH-hCCCCC
Confidence            47788998 999999999999999999999996 899886

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.31  E-value=3.4e-12  Score=57.58  Aligned_cols=37  Identities=19%  Similarity=0.353  Sum_probs=34.0

Q ss_pred             HHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         70 HMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        70 H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      |+++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~-H~~~k~   39 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRS-CSQSGP   39 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHH-TTCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhh-cCCCCC
Confidence            5678888 999999999999999999999996 999987

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=7.1e-14  Score=69.43  Aligned_cols=57  Identities=16%  Similarity=0.137  Sum_probs=51.4

Q ss_pred             CcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCC-CCcccccchhhHHHHHhhhCC-Cc
Q psy11352          9 TLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCF-VCGKQLSNQYNLRVHMETHQN-AF   78 (107)
Q Consensus         9 ~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~-~C~~~f~~~~~l~~H~~~h~~-k~   78 (107)
                      ..+||.|+.|   ++.|. ...|..|   +.. .++     ++|.|+ .|++.|.....|..|+++|.. ++
T Consensus         7 ~~~~~~C~~C---~k~f~-~~~L~~H---~~~-~~~-----~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            7 GKRTQPCTYC---TKEFV-FDTIQSH---QYQ-CPR-----LPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCEEECSSS---CCEEE-HHHHHHH---HHH-CSS-----SEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCCeecccc---CCccC-HHHHHHH---HHH-cCC-----cCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            3789999999   99999 9999999   776 777     999999 999999999999999999876 44

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.1e-12  Score=60.49  Aligned_cols=38  Identities=24%  Similarity=0.366  Sum_probs=34.8

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|++|++.|...+.|.+|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRT-HSGEKP   40 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTT-TCCSCS
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHH-hCCCCC
Confidence            36788998 999999999999999999999996 999886

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=6.8e-13  Score=61.18  Aligned_cols=38  Identities=21%  Similarity=0.350  Sum_probs=35.0

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQI-HTGEKP   40 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHT-TSSCCS
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHH-hCCCCC
Confidence            47788998 999999999999999999999996 999886

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=5.5e-13  Score=61.45  Aligned_cols=38  Identities=18%  Similarity=0.353  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~p   40 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRI-HTGEKP   40 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGG-TSSCCS
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHh-cCCCCC
Confidence            47788998 999999999999999999999996 999886

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.7e-12  Score=59.83  Aligned_cols=41  Identities=24%  Similarity=0.340  Sum_probs=35.8

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      +..|.++     ++|.|+.|++.|.....|..|+++|++ +||.|+.
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            4 GSSGSGE-----RPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CSCSSCC-----CSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CcCCCCC-----CCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6677777     889999999999999999999999998 8999863

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=6.5e-13  Score=61.24  Aligned_cols=38  Identities=24%  Similarity=0.403  Sum_probs=34.8

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~   40 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLI-HTGEKP   40 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTT-TCCCCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHH-cCCCCC
Confidence            46788998 999999999999999999999996 999986

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.30  E-value=5e-13  Score=61.64  Aligned_cols=38  Identities=21%  Similarity=0.392  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKI-HTGEKP   40 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTG-GGCCCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHh-cCCCCC
Confidence            47788999 999999999999999999999996 889886

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.1e-12  Score=58.66  Aligned_cols=41  Identities=24%  Similarity=0.320  Sum_probs=35.4

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSS   83 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~   83 (107)
                      ...|.++     ++|.|+.|++.|.....|..|+++|++ +||.|++
T Consensus         4 ~~~h~~~-----k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            4 GSSGTGQ-----KPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCCSC-----CSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCC-----cCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            4556667     889999999999999999999999998 8999864

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.30  E-value=4e-13  Score=61.99  Aligned_cols=38  Identities=16%  Similarity=0.294  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~   40 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRI-HTGEKP   40 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHH-HTTSCS
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHH-hCCCCC
Confidence            47788998 999999999999999999999996 899886

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=4.2e-12  Score=58.89  Aligned_cols=42  Identities=24%  Similarity=0.260  Sum_probs=37.7

Q ss_pred             CCCCCCCCCCCCCeeeCC--CCcccccchhhHHHHHhhhCC-CcccCCCC
Q psy11352         38 SGTTGGSSNHSKLFATCF--VCGKQLSNQYNLRVHMETHQN-AFYACSSC   84 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C   84 (107)
                      .+.|.++     ++|.|+  .|++.|.....|..|+++|++ +||.|..|
T Consensus         4 ~~~H~~~-----k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            4 GSSGTGE-----KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCSSCCC-----CCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCcCCC-----CCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4566777     899998  899999999999999999999 99999987

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=5.2e-13  Score=61.61  Aligned_cols=38  Identities=18%  Similarity=0.335  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|..|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRS-HTGEKP   40 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHH-HSSSSC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHh-cCCCCC
Confidence            47788999 999999999999999999999996 899886

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=6.1e-13  Score=61.31  Aligned_cols=38  Identities=18%  Similarity=0.123  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRV-HMGEKC   40 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTT-TCCSCS
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHH-hCCCCC
Confidence            47788998 999999999999999999999996 999886

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=6.2e-13  Score=60.73  Aligned_cols=38  Identities=24%  Similarity=0.351  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   40 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKT-HSGQSG   40 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTT-SSSSCS
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHH-cCCCCC
Confidence            47788998 999999999999999999999996 999886

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.2e-12  Score=58.83  Aligned_cols=40  Identities=20%  Similarity=0.332  Sum_probs=34.0

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACS   82 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~   82 (107)
                      +..+.++     ++|.|++|++.|.....|..|+++|++ +||.|.
T Consensus         4 ~~~H~~~-----~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            4 GSSGTDS-----KSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCC-----CCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CcCCCCC-----CCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            6677777     889999999999999999999999988 888873

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=9.7e-13  Score=60.70  Aligned_cols=37  Identities=24%  Similarity=0.381  Sum_probs=34.2

Q ss_pred             HHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         70 HMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        70 H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      |+++|++ +||.|++|++.|.....|.+|+++ |++++|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSV-HSGERP   40 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTT-TTSCCS
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHh-cCCCCC
Confidence            6778998 999999999999999999999996 999886

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=4.9e-13  Score=61.64  Aligned_cols=38  Identities=24%  Similarity=0.428  Sum_probs=34.8

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQAT-HSGEKP   40 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHH-HCCCSC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHH-cCCCCC
Confidence            47788998 999999999999999999999996 899886

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=6.5e-13  Score=61.20  Aligned_cols=38  Identities=13%  Similarity=0.123  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~   40 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRT-HVDDKH   40 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHH-CCSCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHH-hCCCCC
Confidence            47788998 999999999999999999999996 999886

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=8.9e-13  Score=60.76  Aligned_cols=38  Identities=24%  Similarity=0.420  Sum_probs=35.0

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRI-HTGEKP   40 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTT-TCCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhh-cCCCCC
Confidence            47788999 999999999999999999999996 999886

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=6.7e-13  Score=61.23  Aligned_cols=38  Identities=16%  Similarity=0.249  Sum_probs=35.0

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   40 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI-HTGEKP   40 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTT-TSCSCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHH-hCCCCC
Confidence            47788999 999999999999999999999996 999886

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=4.8e-13  Score=61.71  Aligned_cols=38  Identities=18%  Similarity=0.302  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~   40 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRT-HAGEKP   40 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHH-HTTSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHH-cCCCCC
Confidence            47788998 999999999999999999999996 888886

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=5.7e-13  Score=61.40  Aligned_cols=38  Identities=21%  Similarity=0.424  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~   40 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRI-HTGVKP   40 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGG-GSCCCS
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHH-cCCCCC
Confidence            47788998 999999999999999999999996 999886

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.4e-12  Score=59.28  Aligned_cols=40  Identities=23%  Similarity=0.293  Sum_probs=35.7

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACS   82 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~   82 (107)
                      +..|.++     ++|.|++|++.|.....|..|+++|++ +||.|+
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            4 GSSGTGE-----KPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCSCCC-----CSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccCCC-----CCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            6677777     899999999999999999999999998 899986

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.3e-12  Score=60.25  Aligned_cols=37  Identities=19%  Similarity=0.364  Sum_probs=34.0

Q ss_pred             HHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         70 HMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        70 H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      |+++|++ +||.|++|++.|.....|..|+++ |++++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~   40 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRV-HSGEKP   40 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGG-SCCSCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHH-hCCCCC
Confidence            5678888 999999999999999999999996 999886

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.5e-12  Score=58.07  Aligned_cols=39  Identities=28%  Similarity=0.484  Sum_probs=30.1

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYAC   81 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C   81 (107)
                      +..+.++     ++|.|+.|++.|.....|..|+++|++ +||.|
T Consensus         3 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            3 SGSSGGE-----KPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCSS-----CSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CcccCCC-----CCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            4556666     778888888888888888888888877 77776

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=7.5e-13  Score=60.46  Aligned_cols=38  Identities=24%  Similarity=0.315  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   40 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKT-HAAKSG   40 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGG-GCCCCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHH-cCCCCC
Confidence            47788998 999999999999999999999996 999886

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=5.5e-13  Score=61.51  Aligned_cols=38  Identities=21%  Similarity=0.358  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|..|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~   40 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKT-HTGEKP   40 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHH-HCCCCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHH-hCCCCC
Confidence            47788998 999999999999999999999996 888886

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=6.9e-13  Score=61.13  Aligned_cols=38  Identities=18%  Similarity=0.363  Sum_probs=34.8

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|..|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRI-HTGEKP   40 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTT-TSSCCS
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHH-cCCCCC
Confidence            47788998 999999999999999999999996 999886

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=9.8e-13  Score=60.62  Aligned_cols=38  Identities=21%  Similarity=0.289  Sum_probs=34.7

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMV-HTGEKP   40 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGG-GTTCCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHH-hCCCCC
Confidence            36788998 999999999999999999999996 899886

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=7.2e-13  Score=61.06  Aligned_cols=38  Identities=21%  Similarity=0.287  Sum_probs=34.7

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   40 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC-HTGERH   40 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHH-HSCCSS
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHh-cCCCCC
Confidence            47788998 999999999999999999999996 888876

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=5.8e-13  Score=61.39  Aligned_cols=38  Identities=16%  Similarity=0.205  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|+.|++.|...+.|.+|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRI-HTGEKP   40 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHH-HSCCCT
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHH-hCCCCC
Confidence            47788999 999999999999999999999996 888886

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=6.2e-13  Score=60.75  Aligned_cols=37  Identities=22%  Similarity=0.354  Sum_probs=33.8

Q ss_pred             HHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         70 HMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        70 H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      |+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   38 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQT-HAEEKP   38 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHH-HTSSCS
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHH-hCCCCC
Confidence            5678898 999999999999999999999996 888886

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=2.7e-12  Score=57.96  Aligned_cols=37  Identities=22%  Similarity=0.427  Sum_probs=33.9

Q ss_pred             HHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         70 HMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        70 H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      |+++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   39 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI-HTGSGP   39 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTT-TSCCSS
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHh-cCCCCC
Confidence            5678888 999999999999999999999996 999886

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=9.8e-13  Score=60.59  Aligned_cols=38  Identities=18%  Similarity=0.301  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   40 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRI-HTGEKP   40 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGG-GCCCSC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHh-cCCCCC
Confidence            47788999 999999999999999999999996 899886

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=4.8e-13  Score=61.75  Aligned_cols=38  Identities=18%  Similarity=0.287  Sum_probs=34.8

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQS-HTGERH   40 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHH-HTCCCB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHH-cCCCCC
Confidence            47788998 999999999999999999999996 888886

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=7.2e-13  Score=58.26  Aligned_cols=35  Identities=11%  Similarity=0.317  Sum_probs=29.0

Q ss_pred             hhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         72 ETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        72 ~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      ++|++ +||.|..|++.|...+.|..|+++ |++++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~-h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKT-NHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHH-HCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHH-HcCCCC
Confidence            45777 888888888888888888888885 888876

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=3.8e-12  Score=58.09  Aligned_cols=40  Identities=18%  Similarity=0.239  Sum_probs=31.9

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACS   82 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~   82 (107)
                      +..+.++     ++|.|++|++.|.....|..|+++|++ +||.|+
T Consensus         4 ~~~h~~~-----~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            4 GSSGAAK-----TTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             SCSCSSS-----CCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCC-----cCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            4556666     788888888888888888888888888 888874

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=8.2e-13  Score=60.93  Aligned_cols=38  Identities=16%  Similarity=0.360  Sum_probs=34.7

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|..|++.|...+.|..|+++ |++++|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~   40 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRI-HTGEKP   40 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHH-HTSSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHH-cCCCCC
Confidence            46788998 999999999999999999999996 899886

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.1e-12  Score=60.49  Aligned_cols=37  Identities=19%  Similarity=0.209  Sum_probs=34.2

Q ss_pred             HHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         70 HMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        70 H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      |+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~   40 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV-HMGEKT   40 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGG-GGSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHh-cCCCCC
Confidence            6778998 999999999999999999999996 888886

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=4.5e-12  Score=56.93  Aligned_cols=32  Identities=22%  Similarity=0.363  Sum_probs=24.9

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-CcccC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AFYAC   81 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C   81 (107)
                      ++|.|+.|++.|.....|..|+++|++ +||.|
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            9 RVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            777788888888777778778777777 77766

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.29  E-value=8.2e-13  Score=60.92  Aligned_cols=38  Identities=21%  Similarity=0.328  Sum_probs=34.7

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|++|++.|...+.|.+|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKL-HTGEKP   40 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHH-HSCCSS
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHH-cCCCCC
Confidence            36788999 999999999999999999999996 888886

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.2e-13  Score=60.72  Aligned_cols=37  Identities=24%  Similarity=0.379  Sum_probs=33.9

Q ss_pred             HHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         70 HMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        70 H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      |+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   39 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI-HTGSGP   39 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHH-HHSCCS
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHH-cCCCCC
Confidence            5678888 999999999999999999999996 888886

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=8e-13  Score=60.90  Aligned_cols=38  Identities=21%  Similarity=0.406  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAI-HTGKKP   40 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTT-SCCCCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHH-hCCCCC
Confidence            47788998 999999999999999999999996 999886

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=6.4e-13  Score=61.27  Aligned_cols=38  Identities=21%  Similarity=0.369  Sum_probs=34.8

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   40 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI-HTGEKP   40 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHH-HSSSSC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHH-HCCCCC
Confidence            47788998 999999999999999999999996 888886

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.5e-13  Score=61.84  Aligned_cols=38  Identities=16%  Similarity=0.287  Sum_probs=34.8

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   40 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV-HTQETL   40 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHH-HSSCCS
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHH-hCCCCC
Confidence            47788998 999999999999999999999996 888886

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=7.3e-13  Score=61.07  Aligned_cols=38  Identities=21%  Similarity=0.381  Sum_probs=34.8

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   40 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRI-HTGYRP   40 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHH-HTCCCS
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHH-cCCCCC
Confidence            47788998 999999999999999999999996 899886

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.28  E-value=1.3e-12  Score=60.18  Aligned_cols=38  Identities=24%  Similarity=0.350  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   40 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRV-HSGEKP   40 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGG-GTSCCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHH-hCCCCC
Confidence            47788999 999999999999999999999996 999886

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=5e-13  Score=61.63  Aligned_cols=38  Identities=18%  Similarity=0.320  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVI-HTGEKP   40 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHH-HHCCSC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHH-cCCCCC
Confidence            47788999 999999999999999999999996 888886

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.3e-13  Score=61.88  Aligned_cols=38  Identities=16%  Similarity=0.254  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~   40 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKR-HFREKS   40 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHH-HHSTTS
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHH-HcCCCC
Confidence            47888998 999999999999999999999996 888876

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=1.5e-12  Score=60.01  Aligned_cols=38  Identities=13%  Similarity=0.217  Sum_probs=34.7

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   40 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRS-HSGEKP   40 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHH-SCCSSC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHH-hCCCCC
Confidence            36778998 999999999999999999999996 999886

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.8e-12  Score=59.94  Aligned_cols=38  Identities=21%  Similarity=0.383  Sum_probs=34.8

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHH-ccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVS-YRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~-~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|++ + |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~-H~~~k~   41 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYY-HTGEKP   41 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTT-TTTSCS
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhh-cCCCCC
Confidence            36788998 99999999999999999999999 6 999886

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=4.9e-13  Score=61.68  Aligned_cols=38  Identities=24%  Similarity=0.387  Sum_probs=34.8

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~   40 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKI-HTGEKP   40 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHH-HHCSSC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHh-cCCCCC
Confidence            47788999 999999999999999999999996 888876

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=9.4e-13  Score=60.69  Aligned_cols=38  Identities=16%  Similarity=0.304  Sum_probs=35.0

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   40 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRV-HTGEKP   40 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGG-GSCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHH-cCCCCC
Confidence            47888999 999999999999999999999996 899886

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.2e-12  Score=60.40  Aligned_cols=38  Identities=18%  Similarity=0.343  Sum_probs=34.7

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRI-HTGEKP   40 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHH-HCCCCS
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHH-hCCCCC
Confidence            36788998 999999999999999999999996 899886

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.27  E-value=1.3e-12  Score=60.23  Aligned_cols=38  Identities=21%  Similarity=0.315  Sum_probs=34.6

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|++|++.|.....|..|+++ |++++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   40 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRM-HTREKP   40 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGG-GCCSSC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHH-cCCCCC
Confidence            36778998 999999999999999999999996 999886

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=7e-13  Score=61.14  Aligned_cols=38  Identities=18%  Similarity=0.334  Sum_probs=34.8

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRV-HTGEKP   40 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGG-GSSCCS
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHH-cCCCCC
Confidence            47788998 999999999999999999999996 899886

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.27  E-value=3.5e-12  Score=55.22  Aligned_cols=33  Identities=21%  Similarity=0.268  Sum_probs=28.0

Q ss_pred             hCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         74 HQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        74 h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      |++ +||.|..|++.|...+.|..|+++ |++++|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~-h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIRE-VHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHH-TSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHH-HcCCCC
Confidence            566 889999999999999999999885 888876

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1e-11  Score=56.63  Aligned_cols=38  Identities=18%  Similarity=0.256  Sum_probs=34.9

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~   40 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERT-HAGVSG   40 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGG-GSSCSC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhH-hcCCCC
Confidence            47788998 999999999999999999999996 999886

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=1.5e-12  Score=60.03  Aligned_cols=40  Identities=20%  Similarity=0.183  Sum_probs=29.1

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC--CcccCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN--AFYACS   82 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--k~~~C~   82 (107)
                      ++.|.++     ++|.|+.|++.|.....|..|+++|++  +||.|+
T Consensus         4 ~~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            4 GSSGQKE-----KCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCS-----CCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             ccccCCC-----CCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5566666     777777777777777777777777775  577775

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.2e-12  Score=60.35  Aligned_cols=38  Identities=21%  Similarity=0.299  Sum_probs=34.7

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   40 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKV-HTGERP   40 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTT-SCSCCS
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHh-hCCCCC
Confidence            36788998 999999999999999999999996 999886

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1e-12  Score=60.56  Aligned_cols=38  Identities=18%  Similarity=0.338  Sum_probs=34.8

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|..|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~kp   40 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRI-HTGEKP   40 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHH-HHSCCC
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHh-cCCCCC
Confidence            47788998 999999999999999999999996 888886

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=2e-12  Score=59.07  Aligned_cols=37  Identities=19%  Similarity=0.291  Sum_probs=33.9

Q ss_pred             HHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         70 HMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        70 H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      |+++|.+ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQAL-HAGESG   40 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHH-HTTSCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHH-HCCCCC
Confidence            5678888 999999999999999999999996 899886

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=1.5e-12  Score=60.01  Aligned_cols=38  Identities=13%  Similarity=0.123  Sum_probs=34.7

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVL-HMGQKN   40 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHH-HSCCSC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHH-hCCCCC
Confidence            36788998 999999999999999999999996 899886

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=6.2e-13  Score=61.34  Aligned_cols=38  Identities=16%  Similarity=0.295  Sum_probs=34.5

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|+++|.+ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRL-HSREKS   40 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHH-HHHTTC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHH-hCCCCC
Confidence            47788998 999999999999999999999996 888876

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=5.3e-13  Score=61.54  Aligned_cols=38  Identities=21%  Similarity=0.366  Sum_probs=34.7

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   40 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRV-HTGGKP   40 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHH-HHSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHh-cCCCCC
Confidence            47788998 999999999999999999999996 888886

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.25  E-value=4.7e-12  Score=54.88  Aligned_cols=33  Identities=12%  Similarity=0.327  Sum_probs=27.7

Q ss_pred             hCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         74 HQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        74 h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      |++ +||.|..|++.|...+.|..|+++ |++++|
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~-H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKV-HTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGG-GTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHH-cCCCCC
Confidence            566 788888898888888888888885 888876

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.3e-12  Score=60.28  Aligned_cols=37  Identities=16%  Similarity=0.326  Sum_probs=34.0

Q ss_pred             HHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         70 HMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        70 H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      |+++|++ +||.|++|++.|...+.|.+|+++ |++++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   40 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRL-HTGQRP   40 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHH-HHSCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHH-cCCCCC
Confidence            6778898 999999999999999999999996 888886

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=5.7e-13  Score=60.89  Aligned_cols=38  Identities=18%  Similarity=0.282  Sum_probs=34.8

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~   40 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKI-HTRKSG   40 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHH-HCCCCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHH-hCCCCC
Confidence            47788998 999999999999999999999996 889886

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.24  E-value=4.1e-12  Score=55.77  Aligned_cols=35  Identities=17%  Similarity=0.309  Sum_probs=29.2

Q ss_pred             HHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCC
Q psy11352         70 HMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHI  105 (107)
Q Consensus        70 H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~e  105 (107)
                      |+++|++ +||.|+.|++.|...+.|..|+++ |++|
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~-H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR-HMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGG-GTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHH-hccC
Confidence            5677888 889999999999999999999886 7764

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=9.1e-13  Score=60.74  Aligned_cols=38  Identities=18%  Similarity=0.357  Sum_probs=34.8

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRT-HTGEKP   40 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHH-HSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHH-cCCCCC
Confidence            46788998 999999999999999999999996 888886

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=5.4e-13  Score=61.54  Aligned_cols=38  Identities=18%  Similarity=0.279  Sum_probs=34.5

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .|+++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~   40 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS-HERTDP   40 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHH-HHHSCC
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHH-hCCCCC
Confidence            47788998 999999999999999999999996 888876

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.23  E-value=5.3e-14  Score=78.35  Aligned_cols=57  Identities=19%  Similarity=0.242  Sum_probs=52.2

Q ss_pred             CCCcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352          7 PSTLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus         7 ~~~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ..+.+||.|+.|   ++.|.....|..|   +..|  +     ++|.|+.|++.|.....|..|+++|++
T Consensus        69 h~~~~~~~C~~C---~k~f~~~~~l~~H---~~~H--~-----~~~~C~~C~k~f~~~~~l~~H~~~h~~  125 (129)
T 2wbt_A           69 SKAISQFVCPLC---LMPFSSSVSLKQH---IRYT--E-----HTKVCPVCKKEFTSTDSALDHVCKKHN  125 (129)
T ss_dssp             HHHHCSEECTTT---CCEESSHHHHHHH---HHHT--C-----CCCBCTTTCCBCSSHHHHHHHHHHTTC
T ss_pred             hCCCCCeECCCC---CcccCCHhHHHHH---HHHC--C-----CCCCCCCCCcccCCHHHHHHHHHHHCC
Confidence            345789999999   9999999999999   8777  5     789999999999999999999999987

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2e-12  Score=59.60  Aligned_cols=37  Identities=19%  Similarity=0.224  Sum_probs=34.0

Q ss_pred             HHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         70 HMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        70 H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      |+++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~   40 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRV-HTGEKL   40 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHH-HHCCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHH-HcCCCC
Confidence            6778898 999999999999999999999996 888886

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=2e-11  Score=56.09  Aligned_cols=38  Identities=16%  Similarity=0.364  Sum_probs=34.1

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCC-CCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPH-ISP  107 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~-ekp  107 (107)
                      .|+++|++ +||.|+.|++.|...+.|..|+++ |++ ++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERI-HTRGVKS   41 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTT-CCSCCTT
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHH-cCCCCCC
Confidence            36788998 999999999999999999999996 888 876

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=9.9e-12  Score=55.77  Aligned_cols=35  Identities=23%  Similarity=0.496  Sum_probs=31.9

Q ss_pred             hhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         72 ETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        72 ~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      ++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   38 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERI-HTGSGP   38 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGG-CCCCSC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHH-hCCCCC
Confidence            35778 999999999999999999999996 999987

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.20  E-value=1.6e-11  Score=60.96  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=26.9

Q ss_pred             CeeeCCC--CcccccchhhHHHHH-hhhCC-CcccCCC
Q psy11352         50 LFATCFV--CGKQLSNQYNLRVHM-ETHQN-AFYACSS   83 (107)
Q Consensus        50 ~~~~C~~--C~~~f~~~~~l~~H~-~~h~~-k~~~C~~   83 (107)
                      +||.|..  |++.|...+.|..|+ ++|++ +||.|..
T Consensus        26 KPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           26 RPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             CSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             CCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            8888854  888888888888886 57888 8887754

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.19  E-value=1.7e-11  Score=54.41  Aligned_cols=32  Identities=22%  Similarity=0.314  Sum_probs=20.6

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-CcccC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AFYAC   81 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C   81 (107)
                      ++|.|+.|++.|.....|..|+++|++ +||.+
T Consensus         5 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            5 RSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            566666666666666666666666666 66554

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.19  E-value=5.6e-12  Score=66.06  Aligned_cols=57  Identities=18%  Similarity=0.239  Sum_probs=47.1

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPH  104 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~  104 (107)
                      ...|.++     ++|.|+.|++.|.....|..|+++|++ +||.|..|.    ....|..|+++ |.+
T Consensus        17 ~~~H~~~-----kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~-~~~   74 (88)
T 1x6f_A           17 NGPRLQN-----STYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKY-ADG   74 (88)
T ss_dssp             CCSCCCC-----SCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCC-CCC
T ss_pred             ccccCCC-----CCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhcc-ccc
Confidence            4556777     999999999999999999999999999 999998765    44456677775 665

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=1.1e-11  Score=57.03  Aligned_cols=36  Identities=17%  Similarity=0.236  Sum_probs=32.7

Q ss_pred             HhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         71 METHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        71 ~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~   40 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRI-HTGEKP   40 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHH-HSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHH-hCCCCC
Confidence            457888 999999999999999999999996 899886

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=99.16  E-value=2.2e-11  Score=52.19  Aligned_cols=30  Identities=27%  Similarity=0.528  Sum_probs=18.0

Q ss_pred             CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +||.|++|++.|...+.|..|+++ |++++|
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~-H~~~~~   30 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITL-HELLGE   30 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHH-HTTTCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHH-hCCCCC
Confidence            356666666666666666666664 555554

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=6.7e-12  Score=57.51  Aligned_cols=36  Identities=17%  Similarity=0.336  Sum_probs=32.7

Q ss_pred             HhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         71 METHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        71 ~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .++|++ +||.|..|++.|.....|..|+++ |++++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~   40 (45)
T 2epu_A            4 GSSGTGQKPFECTHCGKSFRAKGNLVTHQRI-HTGEKS   40 (45)
T ss_dssp             CCCCCSCCSEEETTTTEEESSHHHHHHHHTT-TSSCCC
T ss_pred             CCCCCCCcCccCCCCCCccCChHHHHHHHHH-hCCCCC
Confidence            456888 999999999999999999999996 999886

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=2.1e-11  Score=55.31  Aligned_cols=35  Identities=11%  Similarity=0.258  Sum_probs=31.8

Q ss_pred             hhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         72 ETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        72 ~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      ++|++ +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   38 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQ-THSDKS   38 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHH-HTCTTC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHh-hCCCCC
Confidence            35778 999999999999999999999996 889886

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.15  E-value=1e-12  Score=66.12  Aligned_cols=57  Identities=23%  Similarity=0.332  Sum_probs=51.6

Q ss_pred             CCCcccccCCC--CCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCC--CcccccchhhHHHHHhhh
Q psy11352          7 PSTLHFLISDH--CLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFV--CGKQLSNQYNLRVHMETH   74 (107)
Q Consensus         7 ~~~~~~~~C~~--C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h   74 (107)
                      ....++|.|+.  |   ++.|.....|..|   +..|.++     ++|.|++  |++.|.....|..|+++|
T Consensus        12 ~~~~~~~~C~~~~C---~k~f~~~~~L~~H---~~~H~~~-----~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHICSHPGC---GKTYFKSSHLKAH---TRTHTGE-----KPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEECSSTTT---CCEESSHHHHHHH---HHHHSSS-----CSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccccCceeCCCCCC---ccccCCHHHHHHH---HHhcCCC-----CCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            45588999988  9   9999999999999   8889888     9999965  999999999999998875

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.3e-11  Score=56.72  Aligned_cols=36  Identities=22%  Similarity=0.356  Sum_probs=32.8

Q ss_pred             HhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         71 METHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        71 ~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +++|++ +||.|++|++.|.....|..|+++ |++++|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRI-HTGEKP   40 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTT-TSSSCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHH-hCCCCC
Confidence            457888 999999999999999999999996 999886

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=4.2e-11  Score=52.11  Aligned_cols=33  Identities=15%  Similarity=0.309  Sum_probs=24.9

Q ss_pred             hhCC-CcccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         73 THQN-AFYACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        73 ~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      .|++ +||.|.+|++.|...+.|..|+++ |++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~-H~~~k   36 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLV-HGDKW   36 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTT-TSTTC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHH-hcCCC
Confidence            3556 788888888888888888888875 77764

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.5e-11  Score=56.58  Aligned_cols=36  Identities=22%  Similarity=0.355  Sum_probs=32.4

Q ss_pred             HhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         71 METHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        71 ~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +++|.+ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWIT-HTREKP   40 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTH-HHHCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHH-cCCCCC
Confidence            457888 999999999999999999999996 888876

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=6.1e-11  Score=51.58  Aligned_cols=33  Identities=24%  Similarity=0.513  Sum_probs=24.8

Q ss_pred             hhCC-CcccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         73 THQN-AFYACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        73 ~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      .|.+ +||.|.+|++.|...+.|..|+++ |++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~-H~~~k   36 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNR-HSTEK   36 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHH-SSTTC
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHH-hccCC
Confidence            3566 788888888888888888888875 77664

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=3.4e-11  Score=52.86  Aligned_cols=33  Identities=27%  Similarity=0.658  Sum_probs=23.0

Q ss_pred             hhhCC-CcccCCCCCCcccChHHHHHH-HHccCCCC
Q psy11352         72 ETHQN-AFYACSSCSHVSRSRDALRKH-VSYRHPHI  105 (107)
Q Consensus        72 ~~h~~-k~~~C~~C~~~f~~~~~l~~H-~~~~H~~e  105 (107)
                      ++|++ +||.|+.|++.|...+.|..| +++ |+++
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~-H~~~   36 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQK-HSNI   36 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHH-TCCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHH-ccCc
Confidence            35666 777777777777777777777 664 6654

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=99.09  E-value=6.9e-11  Score=54.93  Aligned_cols=23  Identities=30%  Similarity=0.589  Sum_probs=11.6

Q ss_pred             CcccCCCCCCcccChHHHHHHHH
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVS   99 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~   99 (107)
                      +||.|.+|++.|.....|..|++
T Consensus         6 kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            6 KPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             SCEECTTTCCEESSHHHHHHHHH
T ss_pred             cCEECCCcCcccCCHHHHHHHhh
Confidence            45555555555555555555544

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=5.9e-11  Score=51.55  Aligned_cols=33  Identities=24%  Similarity=0.407  Sum_probs=22.9

Q ss_pred             hhCC-CcccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         73 THQN-AFYACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        73 ~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      +|.+ +||.|..|++.|...+.|..|+++ |++|+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~-H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRK-HTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHH-HTCCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHH-ccCCC
Confidence            3555 677777777777777777777775 66654

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=7.6e-11  Score=52.25  Aligned_cols=28  Identities=18%  Similarity=0.520  Sum_probs=18.5

Q ss_pred             CcccCCC--CCCcccChHHHHHHHHccCCCC
Q psy11352         77 AFYACSS--CSHVSRSRDALRKHVSYRHPHI  105 (107)
Q Consensus        77 k~~~C~~--C~~~f~~~~~l~~H~~~~H~~e  105 (107)
                      +||.|+.  |++.|...+.|.+|+++ |+++
T Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~r~-Htg~   37 (38)
T 2eln_A            8 ILLKCPTDGCDYSTPDKYKLQAHLKV-HTAL   37 (38)
T ss_dssp             CCEECSSSSCCCEESCHHHHHHHHHH-HSCC
T ss_pred             CCCCCCCCCCCCccCCHHHHHHHHHh-cCCC
Confidence            6666754  77777777777777664 6654

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.07  E-value=1.5e-10  Score=51.21  Aligned_cols=33  Identities=30%  Similarity=0.404  Sum_probs=29.8

Q ss_pred             hCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         74 HQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        74 h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      |++ +||.|.+|++.|...+.|..|+++ |++++|
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   34 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNV-HRRDRA   34 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHT-TCCSCT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHH-cCCCcc
Confidence            456 899999999999999999999996 999986

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=9.2e-11  Score=50.91  Aligned_cols=32  Identities=19%  Similarity=0.330  Sum_probs=24.5

Q ss_pred             hCC-CcccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         74 HQN-AFYACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        74 h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      |.+ +||.|.+|++.|.....|..|+++ |++|+
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~-H~~ek   36 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLL-HTADG   36 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHH-HSSCC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHH-hcCCC
Confidence            555 788888888888888888888885 77764

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=3.3e-11  Score=52.78  Aligned_cols=33  Identities=15%  Similarity=0.342  Sum_probs=22.6

Q ss_pred             hhCC-CcccCCCCCCcccCh-HHHHHHHHccCCCCC
Q psy11352         73 THQN-AFYACSSCSHVSRSR-DALRKHVSYRHPHIS  106 (107)
Q Consensus        73 ~h~~-k~~~C~~C~~~f~~~-~~l~~H~~~~H~~ek  106 (107)
                      +|++ +||.|+.|++.|... +.|..|+++ |++|+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~-H~~~k   37 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWA-HEGVK   37 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHH-HHTCC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHh-cCCCC
Confidence            4555 677777777777777 777777774 66654

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=8.2e-11  Score=54.38  Aligned_cols=37  Identities=22%  Similarity=0.436  Sum_probs=33.2

Q ss_pred             HHhhhCC-CcccCC--CCCCcccChHHHHHHHHccCCCCCC
Q psy11352         70 HMETHQN-AFYACS--SCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        70 H~~~h~~-k~~~C~--~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      |.++|++ +||.|.  .|++.|...+.|..|+++ |++++|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~k~   42 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS-HSGVKP   42 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTT-SCCCCS
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHH-hCCCCC
Confidence            4567888 999998  899999999999999996 999886

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=99.04  E-value=1e-11  Score=52.86  Aligned_cols=30  Identities=27%  Similarity=0.430  Sum_probs=21.3

Q ss_pred             CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +||.|+.|++.|...+.|..|+++ |++++|
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~-H~~~kp   30 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKT-AFIVVA   30 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTS-SSSSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHH-HccCCC
Confidence            467777777777777777777774 777665

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.04  E-value=9e-11  Score=53.62  Aligned_cols=34  Identities=21%  Similarity=0.361  Sum_probs=31.1

Q ss_pred             hhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         73 THQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        73 ~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~-H~~~~~   38 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVG   38 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHH-HSCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHH-ccCCCC
Confidence            5777 999999999999999999999996 888876

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.03  E-value=9.2e-12  Score=59.32  Aligned_cols=46  Identities=17%  Similarity=0.047  Sum_probs=41.6

Q ss_pred             CCCcccccCCCCCCCCCccCCCCCCCCCCCCCC-CCCCCCCCCCCeeeCCCCcccccc
Q psy11352          7 PSTLHFLISDHCLTSPLSSSIPGSSKTKASGSG-TTGGSSNHSKLFATCFVCGKQLSN   63 (107)
Q Consensus         7 ~~~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~-~~~~~~~~~~~~~~C~~C~~~f~~   63 (107)
                      ....++|.|+.|   ++.|.....|..|   +. .|.++     ++|.|++|++.|.+
T Consensus         7 ~~~~k~~~C~~C---~k~f~~~~~L~~H---~~~~H~~~-----k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSC---GKGFSRPDHLNGH---IKQVHTSE-----RPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSS---CCEESSHHHHHHH---HHHTSCCC-----CCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCC---CcccCCHHHHHHH---HHHhcCCC-----CCccCCCCCCCCCC
Confidence            345889999999   9999999999999   86 89888     99999999999975

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=1.7e-10  Score=50.14  Aligned_cols=32  Identities=19%  Similarity=0.524  Sum_probs=21.3

Q ss_pred             hCC-CcccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         74 HQN-AFYACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        74 h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      |.+ +||.|+.|++.|.....|..|+++ |++++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~-H~~~k   36 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRI-HTNEK   36 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHH-HCCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHH-hCCCC
Confidence            344 677777777777777777777774 66654

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=99.02  E-value=2.3e-10  Score=48.90  Aligned_cols=31  Identities=19%  Similarity=0.239  Sum_probs=28.7

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-Cccc
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AFYA   80 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~   80 (107)
                      ++|.|++|++.|.....|..|+++|++ +||.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            478999999999999999999999999 8875

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.00  E-value=1.3e-10  Score=51.04  Aligned_cols=29  Identities=21%  Similarity=0.364  Sum_probs=14.3

Q ss_pred             CcccCC--CCCCcccChHHHHHHHHccCCCCC
Q psy11352         77 AFYACS--SCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        77 k~~~C~--~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      +||.|.  .|++.|...+.|.+|+++ |++++
T Consensus         5 k~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~k   35 (38)
T 1bhi_A            5 KPFLCTAPGCGQRFTNEDHLAVHKHK-HEMTL   35 (38)
T ss_dssp             CCEECCCTTTCCEESSHHHHHHHHHH-HHTTT
T ss_pred             cceECCCCCCCcccCCHHHHHHHHHH-hCCCC
Confidence            455555  355555555555555553 44444

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=4.7e-10  Score=48.90  Aligned_cols=35  Identities=20%  Similarity=0.365  Sum_probs=30.7

Q ss_pred             CCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC-Cc
Q psy11352         39 GTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN-AF   78 (107)
Q Consensus        39 ~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~   78 (107)
                      ..|.++     ++|.|+.|++.|.....|..|+++|++ +|
T Consensus         2 ~~h~~~-----k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSG-----RSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCC-----CCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCC-----CCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            345666     899999999999999999999999997 54

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.97  E-value=4.8e-11  Score=55.21  Aligned_cols=38  Identities=16%  Similarity=0.301  Sum_probs=29.4

Q ss_pred             HHHHhhhCC-CcccCC--CCCCcccChHHHHHHHHccCCCCC
Q psy11352         68 RVHMETHQN-AFYACS--SCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        68 ~~H~~~h~~-k~~~C~--~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      ..|...|++ +||.|+  .|++.|...+.|..|+++ |++||
T Consensus         7 ~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~-H~~ek   47 (47)
T 1ncs_A            7 IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQT-HLEDR   47 (47)
T ss_dssp             GGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHH-HTTTC
T ss_pred             HHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHH-ccCCC
Confidence            344556777 888885  688888888888888885 77775

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.96  E-value=5e-10  Score=46.01  Aligned_cols=29  Identities=17%  Similarity=0.494  Sum_probs=23.3

Q ss_pred             CcccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      +||.|+.|++.|...+.|..|+++ |++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~-h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRS-HTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHH-HSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH-hcCCC
Confidence            478888888888888888888885 77764

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.96  E-value=3.1e-10  Score=46.70  Aligned_cols=29  Identities=24%  Similarity=0.426  Sum_probs=22.0

Q ss_pred             CcccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      +||.|+.|++.|...+.|..|+++ |++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~-H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILL-HENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTG-GGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHH-hcCCC
Confidence            477788888888888888888875 76664

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.96  E-value=7.2e-10  Score=46.42  Aligned_cols=29  Identities=21%  Similarity=0.408  Sum_probs=24.6

Q ss_pred             CcccCC--CCCCcccChHHHHHHHHccCCCCC
Q psy11352         77 AFYACS--SCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        77 k~~~C~--~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      +||.|+  .||+.|...+.|..|+++ |++|+
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~-H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRT-HTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTT-TSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHH-hcCCC
Confidence            478897  899999999999999986 88875

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.95  E-value=8.6e-10  Score=54.77  Aligned_cols=34  Identities=21%  Similarity=0.225  Sum_probs=29.6

Q ss_pred             hCC-CcccCCC--CCCcccChHHHHHHHHccCCCCCC
Q psy11352         74 HQN-AFYACSS--CSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        74 h~~-k~~~C~~--C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .++ |||.|..  |+++|.+.++|..|+++.|++|||
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP   58 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLP   58 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCC
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCC
Confidence            356 9999975  999999999999998435999998

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.95  E-value=5.4e-10  Score=46.17  Aligned_cols=30  Identities=20%  Similarity=0.417  Sum_probs=23.9

Q ss_pred             CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +||.|..|++.|...+.|..|+++ |.+++|
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~-h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKT-KHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHH-HTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHH-HccCCC
Confidence            478888888888888888888886 666654

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.94  E-value=8.6e-10  Score=45.53  Aligned_cols=29  Identities=17%  Similarity=0.335  Sum_probs=21.8

Q ss_pred             CcccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      +||.|..|++.|.....|..|+++ |++++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~-h~~~k   30 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLET-HDTDK   30 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHT-TCCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHH-hccCC
Confidence            477788888888888888888775 77664

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.93  E-value=3.7e-10  Score=49.42  Aligned_cols=32  Identities=22%  Similarity=0.382  Sum_probs=22.2

Q ss_pred             hCC-CcccCCC--CCCcccChHHHHHHHHccCCCCC
Q psy11352         74 HQN-AFYACSS--CSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        74 h~~-k~~~C~~--C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      |++ +||.|.+  |++.|...+.|..|+++ |++|+
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~-H~~ek   37 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRW-HTGER   37 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHH-HHTTC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHh-cCCCC
Confidence            455 6777763  77777777777777775 66664

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.93  E-value=1.5e-09  Score=46.58  Aligned_cols=29  Identities=24%  Similarity=0.356  Sum_probs=27.1

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-Cc
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AF   78 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~   78 (107)
                      ++|.|+.|++.|.....|..|+++|++ +|
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            6 SGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            889999999999999999999999987 54

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.93  E-value=5.8e-10  Score=51.59  Aligned_cols=33  Identities=24%  Similarity=0.390  Sum_probs=30.0

Q ss_pred             hCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         74 HQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        74 h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +.+ ++|.|.+|++.|.....|..|+++ |++++|
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~   40 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLS-HSGEKP   40 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGG-SCSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHh-cCCCCC
Confidence            455 899999999999999999999996 999886

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.92  E-value=1.7e-09  Score=46.48  Aligned_cols=29  Identities=17%  Similarity=0.315  Sum_probs=27.1

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-Cc
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AF   78 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~   78 (107)
                      ++|.|+.|++.|.....|..|+++|++ +|
T Consensus         6 k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            6 RPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             cCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            899999999999999999999999987 54

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.92  E-value=9.4e-10  Score=45.53  Aligned_cols=29  Identities=31%  Similarity=0.503  Sum_probs=24.4

Q ss_pred             CcccCCCCCCcccChHHHHHH-HHccCCCCC
Q psy11352         77 AFYACSSCSHVSRSRDALRKH-VSYRHPHIS  106 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H-~~~~H~~ek  106 (107)
                      +||.|..|++.|...+.|..| +++ |++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~-H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKI-HSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTT-SCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHH-ccCCC
Confidence            478999999999999999999 564 88875

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.91  E-value=1.8e-09  Score=46.98  Aligned_cols=34  Identities=21%  Similarity=0.308  Sum_probs=30.7

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ++.+.++     ++|.|+.|++.|.....|..|+++|++
T Consensus         3 ~~~h~~~-----k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            3 TRGSTGI-----KPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             SSTTCCS-----SSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCcCCCC-----CCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            5667777     999999999999999999999999875

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.42  E-value=1.7e-10  Score=47.64  Aligned_cols=29  Identities=21%  Similarity=0.298  Sum_probs=23.2

Q ss_pred             CcccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      +||.|+.|++.|...++|..|+++ |++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~-H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQ-HTGEK   29 (29)
Confidence            478888888888888888888885 77764

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.89  E-value=5.6e-10  Score=45.80  Aligned_cols=29  Identities=17%  Similarity=0.410  Sum_probs=20.8

Q ss_pred             CcccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      +||.|..|++.|.....|..|+++ |++|+
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~-H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRI-HSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHH-HHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHH-hcCCC
Confidence            467777777777777777777775 66654

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.89  E-value=1.9e-09  Score=45.37  Aligned_cols=29  Identities=21%  Similarity=0.426  Sum_probs=23.2

Q ss_pred             CcccCC--CCCCcccChHHHHHHHHccCCCCC
Q psy11352         77 AFYACS--SCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        77 k~~~C~--~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      +||.|.  .|++.|...+.|..|+++ |++++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~~   32 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKS-HQEKA   32 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGG-GTCCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHH-ccCCC
Confidence            578887  788888888888888885 77764

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.89  E-value=6.3e-10  Score=45.59  Aligned_cols=29  Identities=17%  Similarity=0.276  Sum_probs=22.2

Q ss_pred             CcccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      +||.|+.|++.|...+.|..|+++ |++|+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~-h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKI-HIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHH-HHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHH-hccCC
Confidence            477888888888888888888875 66654

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.86  E-value=2e-09  Score=43.40  Aligned_cols=27  Identities=26%  Similarity=0.555  Sum_probs=20.5

Q ss_pred             cccCCCCCCcccChHHHHHHHHccCCCC
Q psy11352         78 FYACSSCSHVSRSRDALRKHVSYRHPHI  105 (107)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~~H~~e  105 (107)
                      ||.|..|++.|...+.|..|+++ |++|
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~-h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRV-HKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGG-TCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHH-cCCC
Confidence            57888888888888888888885 7664

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.86  E-value=1.8e-09  Score=53.45  Aligned_cols=37  Identities=22%  Similarity=0.307  Sum_probs=30.9

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSH   86 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~   86 (107)
                      ++|.|..|++.|.....|..|+++|++....+.+++.
T Consensus        12 kpy~C~~CgK~F~~~s~L~~H~r~Htg~~~~~~~~~~   48 (66)
T 2epp_A           12 GILPCGLCGKVFTDANRLRQHEAQHGVTSLQLGYIDL   48 (66)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHTTTSCCCCSCCC
T ss_pred             cCcCCCCCCCccCCHHHHHhhhhhhCCCccccccccC
Confidence            8999999999999999999999999984445555543

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.84  E-value=8.9e-09  Score=50.92  Aligned_cols=32  Identities=25%  Similarity=0.461  Sum_probs=28.0

Q ss_pred             hCC-CcccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         74 HQN-AFYACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        74 h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      +.+ +||.|.+|++.|.+.+.|.+|+++ |+++.
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~-Htg~~   40 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQ-HGVTS   40 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHH-HTTTS
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhh-hCCCc
Confidence            456 899999999999999999999997 77654

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=4.6e-09  Score=45.78  Aligned_cols=33  Identities=18%  Similarity=0.338  Sum_probs=29.0

Q ss_pred             CCCCCCCCCCCCeeeCCCCcccccchhhHHHH-HhhhCC
Q psy11352         39 GTTGGSSNHSKLFATCFVCGKQLSNQYNLRVH-METHQN   76 (107)
Q Consensus        39 ~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~   76 (107)
                      +.|.++     ++|.|+.|++.|.....|..| +++|++
T Consensus         2 ~~H~~~-----k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            2 SSGSSG-----HLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             CSSSSS-----CEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             CccCCC-----cCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            345666     899999999999999999999 888875

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=4.8e-09  Score=46.30  Aligned_cols=27  Identities=22%  Similarity=0.664  Sum_probs=25.7

Q ss_pred             CeeeCCC--CcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFV--CGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~   76 (107)
                      +||.|+.  |++.|...+.|..|+++|++
T Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            8 ILLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             CCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            8999986  99999999999999999987

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=7.7e-09  Score=44.56  Aligned_cols=27  Identities=26%  Similarity=0.378  Sum_probs=25.9

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ++|.|+.|++.|.....|..|+++|++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elt_A            8 KPYKCPQCSYASAIKANLNVHLRKHTG   34 (36)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHccC
Confidence            899999999999999999999999986

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.81  E-value=1.7e-10  Score=56.38  Aligned_cols=54  Identities=7%  Similarity=0.020  Sum_probs=42.4

Q ss_pred             CccccCCC-CcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHH
Q psy11352          1 MNFHYKPS-TLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLR   68 (107)
Q Consensus         1 ~~~h~~~~-~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~   68 (107)
                      |..|++.. +++||.|+.|   ++.|.....|.      ..|.++     ++|.|+.|++.|....++.
T Consensus         2 L~~h~~~H~~~k~~~C~~C---~k~F~~~~~l~------~~H~~~-----k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVC---SSTFTDLEANQ------LFDPMT-----GTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSS---CCEEEHHHHHH------HEETTT-----TEEBCSSSCCBCEECTTCS
T ss_pred             hhhHHHHcCCCCCccCCCC---CchhccHHHhH------hhcCCC-----CCEECCCCCCccccCcccc
Confidence            34566644 4899999999   99998877664      346777     8999999999998876654

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=98.30  E-value=5e-10  Score=46.37  Aligned_cols=29  Identities=28%  Similarity=0.478  Sum_probs=21.5

Q ss_pred             CcccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      +||.|..|++.|...+.|..|+++ |++++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~-h~~~k   30 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRI-HTGEK   30 (30)
Confidence            467788888888888888888775 66654

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=6.4e-09  Score=44.88  Aligned_cols=27  Identities=26%  Similarity=0.657  Sum_probs=25.8

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ++|.|+.|++.|.....|..|+++|++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elv_A            8 LLYDCHICERKFKNELDRDRHMLVHGD   34 (36)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTTTST
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHhcC
Confidence            899999999999999999999999986

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.80  E-value=2.7e-10  Score=48.29  Aligned_cols=29  Identities=21%  Similarity=0.258  Sum_probs=22.1

Q ss_pred             eeeCCCCcccccchhhHHHHHhhhCC-Ccc
Q psy11352         51 FATCFVCGKQLSNQYNLRVHMETHQN-AFY   79 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~   79 (107)
                      +|.|+.|++.|.....|..|+++|++ +||
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            57777888888777778788777777 665

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.80  E-value=4.9e-09  Score=45.84  Aligned_cols=30  Identities=27%  Similarity=0.479  Sum_probs=28.1

Q ss_pred             CeeeCC--CCcccccchhhHHHHHhhhCC-Ccc
Q psy11352         50 LFATCF--VCGKQLSNQYNLRVHMETHQN-AFY   79 (107)
Q Consensus        50 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~-k~~   79 (107)
                      ++|.|+  .|++.|.....|..|+++|++ +||
T Consensus         5 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            5 KPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             cceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            889999  599999999999999999998 876

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=7.4e-09  Score=44.68  Aligned_cols=27  Identities=26%  Similarity=0.471  Sum_probs=25.9

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ++|.|+.|++.|.....|..|+++|++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elq_A            8 KPFKCSLCEYATRSKSNLKAHMNRHST   34 (36)
T ss_dssp             CSEECSSSSCEESCHHHHHHHHHHSST
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcc
Confidence            899999999999999999999999986

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=6.5e-09  Score=45.14  Aligned_cols=32  Identities=16%  Similarity=0.298  Sum_probs=28.4

Q ss_pred             CCCCCCCCCCCeeeCCCCcccccch-hhHHHHHhhhCC
Q psy11352         40 TTGGSSNHSKLFATCFVCGKQLSNQ-YNLRVHMETHQN   76 (107)
Q Consensus        40 ~~~~~~~~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~   76 (107)
                      +|.++     ++|.|+.|++.|... ..|..|+++|++
T Consensus         3 ~h~~~-----k~~~C~~C~k~f~~~~~~L~~H~~~H~~   35 (37)
T 2elp_A            3 SGSSG-----RAMKCPYCDFYFMKNGSDLQRHIWAHEG   35 (37)
T ss_dssp             SCCCC-----CCEECSSSSCEECSSCHHHHHHHHHHHT
T ss_pred             CCCCC-----CCeECCCCChhhccCHHHHHHHHHhcCC
Confidence            35556     899999999999999 999999999976

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.79  E-value=3.6e-09  Score=46.14  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=16.1

Q ss_pred             CeeeCCCCcccccchhhHHHHH
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHM   71 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~   71 (107)
                      +||.|++|++.|.+.+.|..|+
T Consensus         7 kp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            7 ARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCEETTTTEECSCHHHHHHHH
T ss_pred             cCeECCCCCCccCCHhHccCcC
Confidence            6777777777777777777776

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.77  E-value=4.9e-09  Score=42.61  Aligned_cols=26  Identities=23%  Similarity=0.494  Sum_probs=16.0

Q ss_pred             CcccCCCCCCcccChHHHHHHHHccCC
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSYRHP  103 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~~H~  103 (107)
                      +||.|..|++.|...+.|..|+++ |+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~-h~   27 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRV-HT   27 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTT-SC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHh-cC
Confidence            356666666666666666666664 44

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=1.3e-08  Score=43.87  Aligned_cols=27  Identities=30%  Similarity=0.524  Sum_probs=25.9

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ++|.|+.|++.|.....|..|+++|++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2els_A            8 KIFTCEYCNKVFKFKHSLQAHLRIHTN   34 (36)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHHCC
T ss_pred             CCEECCCCCceeCCHHHHHHHHHHhCC
Confidence            899999999999999999999999986

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=1.2e-08  Score=43.93  Aligned_cols=27  Identities=26%  Similarity=0.469  Sum_probs=25.9

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ++|.|++|++.|.....|..|+++|++
T Consensus         8 ~~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elr_A            8 KTHLCDMCGKKFKSKGTLKSHKLLHTA   34 (36)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHHHHHSS
T ss_pred             CCeecCcCCCCcCchHHHHHHHHHhcC
Confidence            889999999999999999999999986

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.74  E-value=6.5e-09  Score=41.94  Aligned_cols=24  Identities=33%  Similarity=0.602  Sum_probs=13.5

Q ss_pred             CcccCCCCCCcccChHHHHHHHHc
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSY  100 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~  100 (107)
                      +||.|..||+.|...+.|..|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRT   25 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHH
T ss_pred             cCccCCCcChhhCCHHHHHHHHHH
Confidence            355555555555555555555553

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.73  E-value=4.3e-09  Score=42.60  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=14.8

Q ss_pred             CcccCCCCCCcccChHHHHHHHHc
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSY  100 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~  100 (107)
                      +||.|+.|++.|...+.|..|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHh
Confidence            356666666666666666666654

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.73  E-value=5.2e-09  Score=45.63  Aligned_cols=31  Identities=23%  Similarity=0.320  Sum_probs=25.9

Q ss_pred             hCC-CcccCCCCCCcccChHHHHHHHHccCCCC
Q psy11352         74 HQN-AFYACSSCSHVSRSRDALRKHVSYRHPHI  105 (107)
Q Consensus        74 h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~e  105 (107)
                      +.+ +||.|++||+.|.+.++|.+|+.. +-.+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~py-~C~~   34 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQAY-YCSH   34 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHHHH-TSTT
T ss_pred             CCCccCeECCCCCCccCCHhHccCcCCe-ECcC
Confidence            356 899999999999999999999863 4433

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.72  E-value=2.1e-10  Score=59.99  Aligned_cols=37  Identities=19%  Similarity=0.328  Sum_probs=31.9

Q ss_pred             HHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         70 HMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        70 H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +.++|++ +||.|++|++.|...+.|..|+++ |++++|
T Consensus        16 ~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~-Ht~ekp   53 (88)
T 1x6f_A           16 GNGPRLQNSTYQCKHCDSKLQSTAELTSHLNI-HNEEFQ   53 (88)
T ss_dssp             CCCSCCCCSCEECSSSCCEESSHHHHHHHHHH-HHHHHH
T ss_pred             cccccCCCCCCcCCCCCCEeCCHHHHHHHHHH-hCCCCC
Confidence            3456888 999999999999999999999996 877654

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.69  E-value=1.4e-08  Score=41.50  Aligned_cols=27  Identities=26%  Similarity=0.450  Sum_probs=25.0

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ++|.|+.|++.|.....|..|+++|++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcC
Confidence            479999999999999999999999986

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.69  E-value=1.5e-08  Score=40.81  Aligned_cols=26  Identities=19%  Similarity=0.378  Sum_probs=24.2

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQ   75 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~   75 (107)
                      ++|.|+.|++.|.....|..|+++|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHcc
Confidence            68999999999999999999999874

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.68  E-value=1.6e-08  Score=46.68  Aligned_cols=27  Identities=30%  Similarity=0.522  Sum_probs=26.1

Q ss_pred             CeeeCCCCcccccchhhHHHHHh-hhCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHME-THQN   76 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~-~h~~   76 (107)
                      ++|.|++|++.|.....|..|++ +|++
T Consensus         6 kp~~C~~C~k~F~~~~~L~~H~~~~H~~   33 (48)
T 3iuf_A            6 KPYACDICGKRYKNRPGLSYHYAHSHLA   33 (48)
T ss_dssp             SCEECTTTCCEESSHHHHHHHHHHSSCC
T ss_pred             cCEECCCcCcccCCHHHHHHHhhhhcCC
Confidence            89999999999999999999999 9987

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.68  E-value=1.5e-08  Score=41.12  Aligned_cols=27  Identities=30%  Similarity=0.559  Sum_probs=24.9

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ++|.|+.|++.|.....|..|+++|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            679999999999999999999998874

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.68  E-value=1.9e-08  Score=41.24  Aligned_cols=27  Identities=30%  Similarity=0.501  Sum_probs=25.4

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ++|.|+.|++.|.....|..|+++|++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~   28 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDT   28 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhcc
Confidence            689999999999999999999999986

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.11  E-value=2.6e-09  Score=42.80  Aligned_cols=24  Identities=21%  Similarity=0.447  Sum_probs=17.3

Q ss_pred             CcccCCCCCCcccChHHHHHHHHc
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSY  100 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~  100 (107)
                      +||.|+.||+.|...+.|..|+++
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            467777777777777777777765

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.65  E-value=2.1e-08  Score=40.85  Aligned_cols=27  Identities=30%  Similarity=0.536  Sum_probs=25.0

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ++|.|+.|++.|.....|..|+++|++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcC
Confidence            368999999999999999999999986

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.65  E-value=1.1e-08  Score=41.27  Aligned_cols=26  Identities=19%  Similarity=0.364  Sum_probs=24.0

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQ   75 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~   75 (107)
                      ++|.|+.|++.|.....|..|+++|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            68999999999999999999998874

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.62  E-value=2.7e-08  Score=40.77  Aligned_cols=27  Identities=22%  Similarity=0.434  Sum_probs=24.9

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ++|.|+.|++.|.....|..|+++|.+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~   27 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHcc
Confidence            368999999999999999999999987

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.62  E-value=2.4e-08  Score=40.61  Aligned_cols=27  Identities=33%  Similarity=0.556  Sum_probs=25.0

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ++|.|+.|++.|.....|..|+++|++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSG   27 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHT
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcC
Confidence            469999999999999999999999976

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.59  E-value=3.2e-08  Score=39.68  Aligned_cols=26  Identities=23%  Similarity=0.508  Sum_probs=23.4

Q ss_pred             eeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         51 FATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      +|.|+.|++.|.....|..|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            48899999999999999999999875

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.58  E-value=3.7e-08  Score=40.92  Aligned_cols=27  Identities=30%  Similarity=0.514  Sum_probs=24.6

Q ss_pred             CeeeCC--CCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCF--VCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ++|.|+  .|++.|.....|..|+++|++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~   29 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcC
Confidence            468997  999999999999999999986

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.58  E-value=2.8e-08  Score=40.39  Aligned_cols=27  Identities=26%  Similarity=0.460  Sum_probs=24.6

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ++|.|+.|++.|.....|..|+++|++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            468999999999999999999999876

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.56  E-value=4.1e-08  Score=45.01  Aligned_cols=34  Identities=26%  Similarity=0.465  Sum_probs=29.7

Q ss_pred             CCCCCCCCCCCCCeeeCC--CCcccccchhhHHHHHhhhCC
Q psy11352         38 SGTTGGSSNHSKLFATCF--VCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ...+.++     ++|.|+  .|++.|.....|..|+++|++
T Consensus        10 ~~~H~~~-----k~~~C~~~~C~k~F~~~~~L~~H~~~H~~   45 (47)
T 1ncs_A           10 YVKEMPD-----KTFECLFPGCTKTFKRRYNIRSHIQTHLE   45 (47)
T ss_dssp             SCEEETT-----TEEECCCTTCCCEECSSSSHHHHHHHHTT
T ss_pred             HhccCCC-----CCeECCCCCCCCccCCHHHHHHHHHHccC
Confidence            3446777     999995  799999999999999999987

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.56  E-value=6.9e-08  Score=41.87  Aligned_cols=27  Identities=30%  Similarity=0.534  Sum_probs=25.3

Q ss_pred             CeeeCC--CCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCF--VCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ++|.|+  .|++.|.....|..|+++|++
T Consensus         7 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~   35 (37)
T 1va1_A            7 KQHICHIQGCGKVYGKTSHLRAHLRWHTG   35 (37)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            899998  599999999999999999986

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.96  E-value=8.4e-09  Score=42.24  Aligned_cols=26  Identities=27%  Similarity=0.643  Sum_probs=20.6

Q ss_pred             eeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         51 FATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      +|.|+.|++.|.....|..|+++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            57788888888888888888877765

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.55  E-value=6.2e-08  Score=40.46  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=25.2

Q ss_pred             CeeeCC--CCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCF--VCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ++|.|+  .|++.|.....|..|+++|++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~   30 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccC
Confidence            679999  899999999999999999986

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.54  E-value=3.9e-08  Score=39.99  Aligned_cols=23  Identities=26%  Similarity=0.644  Sum_probs=14.5

Q ss_pred             cccCC--CCCCcccChHHHHHHHHc
Q psy11352         78 FYACS--SCSHVSRSRDALRKHVSY  100 (107)
Q Consensus        78 ~~~C~--~C~~~f~~~~~l~~H~~~  100 (107)
                      ||.|.  .|++.|...+.|..|+++
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~   26 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKI   26 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHH
Confidence            55666  666666666666666664

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.94  E-value=9.7e-09  Score=41.01  Aligned_cols=26  Identities=27%  Similarity=0.484  Sum_probs=19.9

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQ   75 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~   75 (107)
                      ++|.|+.||+.|.....|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            36788888888888888888877663

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=2.1e-09  Score=54.47  Aligned_cols=62  Identities=23%  Similarity=0.313  Sum_probs=51.1

Q ss_pred             CccccC-CCCcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352          1 MNFHYK-PSTLHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus         1 ~~~h~~-~~~~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      |..|.. .-..+|+.|+.|   +..|. ...|..|   . .+.++     +++.|+.|++.|. ...|..|+++|.+
T Consensus         5 L~~H~~~~c~~r~~~C~~C---~~~~~-~~~L~~H---~-~~c~~-----~~~~C~~C~~~~~-~~~l~~H~~~c~~   67 (75)
T 2d9k_A            5 SSGHEETECPLRLAVCQHC---DLELS-ILKLKEH---E-DYCGA-----RTELCGNCGRNVL-VKDLKTHPEVCGR   67 (75)
T ss_dssp             CSCCCCCCCCCCCEECSSS---CCEEC-HHHHHHH---H-HHHHH-----CEEECSSSCCEEE-TTGGGTHHHHBTT
T ss_pred             HHhhCcccCCCcccCCccc---ChHhh-HHHHHHH---H-hHcCC-----CceEcccCCCcCc-HHHHHHHHHHccC
Confidence            345665 345899999999   99994 7778888   6 67777     9999999999887 4889999999887

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.85  E-value=1.9e-08  Score=41.30  Aligned_cols=27  Identities=22%  Similarity=0.450  Sum_probs=21.3

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ++|.|+.|++.|.....|..|+++|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTG   28 (30)
Confidence            567888888888888888888877765

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.46  E-value=7.6e-08  Score=39.45  Aligned_cols=27  Identities=19%  Similarity=0.344  Sum_probs=24.0

Q ss_pred             CeeeCCCCcccccchhhHHHH-HhhhCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVH-METHQN   76 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H-~~~h~~   76 (107)
                      ++|.|+.|++.|.....|..| +++|++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccC
Confidence            368999999999999999999 688876

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.46  E-value=1.2e-07  Score=38.40  Aligned_cols=27  Identities=22%  Similarity=0.623  Sum_probs=24.5

Q ss_pred             CeeeCC--CCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCF--VCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ++|.|+  .|++.|.....|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            368999  999999999999999999874

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.36  E-value=9.6e-07  Score=43.26  Aligned_cols=48  Identities=21%  Similarity=0.526  Sum_probs=41.6

Q ss_pred             CCCcccccchhhHHHHH-hhhCC-C------cccCC--CCCCcccChHHHHHHHHccC
Q psy11352         55 FVCGKQLSNQYNLRVHM-ETHQN-A------FYACS--SCSHVSRSRDALRKHVSYRH  102 (107)
Q Consensus        55 ~~C~~~f~~~~~l~~H~-~~h~~-k------~~~C~--~C~~~f~~~~~l~~H~~~~H  102 (107)
                      ..|++.|.+...|..|+ ..|.+ +      +|.|.  .|++.+.....|..|++..|
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            56999999999999998 47876 5      79996  79999999999999998654

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.69  E-value=8.4e-06  Score=44.84  Aligned_cols=26  Identities=15%  Similarity=0.361  Sum_probs=14.3

Q ss_pred             hCC-CcccCCCCCCcccChHHHHHHHH
Q psy11352         74 HQN-AFYACSSCSHVSRSRDALRKHVS   99 (107)
Q Consensus        74 h~~-k~~~C~~C~~~f~~~~~l~~H~~   99 (107)
                      |+| +||.|..|++.|.+.+.|..|++
T Consensus        45 ~tGekpfyC~~C~K~F~~~~~L~~H~r   71 (124)
T 1zr9_A           45 LPGGGLHRCLACARYFIDSTNLKTHFR   71 (124)
T ss_dssp             SGGGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             CCCCcceEcccCcchhCCHHHHHHHHh
Confidence            444 55555555555555555555554

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.39  E-value=0.0002  Score=39.62  Aligned_cols=50  Identities=20%  Similarity=0.282  Sum_probs=38.3

Q ss_pred             CeeeCCCCcccccchhhHHHHH--hhh-------------------------------CC-CcccCCCCCCcccChHHHH
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHM--ETH-------------------------------QN-AFYACSSCSHVSRSRDALR   95 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~--~~h-------------------------------~~-k~~~C~~C~~~f~~~~~l~   95 (107)
                      +++.|..|+..|.+...+..|.  +.|                               .+ ..|.|.+|.+.|.+...+.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~~~  110 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAE  110 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETTTTEECSSHHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCCCCCEeCCHHHHH
Confidence            4577888888888777777776  222                               22 4678999999999999999


Q ss_pred             HHHH
Q psy11352         96 KHVS   99 (107)
Q Consensus        96 ~H~~   99 (107)
                      .|..
T Consensus       111 ~H~~  114 (127)
T 1zu1_A          111 SHYI  114 (127)
T ss_dssp             HHHT
T ss_pred             HHHC
Confidence            9875

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.14  E-value=0.00042  Score=31.32  Aligned_cols=22  Identities=32%  Similarity=0.380  Sum_probs=15.1

Q ss_pred             eeeCCCCcccccchhhHHHHHh
Q psy11352         51 FATCFVCGKQLSNQYNLRVHME   72 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~   72 (107)
                      .+.|+.|+..|.....|+.||+
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhhh
Confidence            4667777777777777777764

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.82  E-value=0.00024  Score=39.10  Aligned_cols=30  Identities=20%  Similarity=0.516  Sum_probs=25.9

Q ss_pred             CCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhh
Q psy11352         39 GTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMET   73 (107)
Q Consensus        39 ~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~   73 (107)
                      ..+++.     ++|.|..|++.|.+...|..|+++
T Consensus        43 ed~tGe-----kpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           43 PDLPGG-----GLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSSGGG-----GCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccCCCC-----cceEcccCcchhCCHHHHHHHHhh
Confidence            345566     899999999999999999999874

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.73  E-value=0.00093  Score=30.20  Aligned_cols=24  Identities=33%  Similarity=0.627  Sum_probs=19.2

Q ss_pred             CcccCCCCCCcccChHHHHHHHHc
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSY  100 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~  100 (107)
                      -+|.|+.|+..|.....|+.||+.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            036788999999999999999873

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=96.47  E-value=0.0025  Score=26.89  Aligned_cols=26  Identities=31%  Similarity=0.497  Sum_probs=14.7

Q ss_pred             ccCCCCCCcccChHHHHHHHHccCCC
Q psy11352         79 YACSSCSHVSRSRDALRKHVSYRHPH  104 (107)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~~H~~  104 (107)
                      |.|++|.+.|.....|..|....|..
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             cCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            55556655555555565555554543

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.25  E-value=0.0073  Score=34.74  Aligned_cols=55  Identities=13%  Similarity=0.341  Sum_probs=39.3

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      .+..|+.|+..+ ....|..|....-. ++..|+.|+..|.. ..|..|..+ ++|+.+
T Consensus       109 ~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~-~~~~~~  164 (170)
T 3hcs_A          109 ALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQN-CPLALE  164 (170)
T ss_dssp             SEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHTT-CCC---
T ss_pred             eeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHHh-CcChhh
Confidence            456788888877 45668888876666 77889999887754 468899985 877653

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=95.91  E-value=0.00093  Score=32.42  Aligned_cols=54  Identities=13%  Similarity=0.095  Sum_probs=39.4

Q ss_pred             CCCCCCCCccCCCCCCCCCCCCCCCCCCCCCC-CCCeeeCC--CCcccccchhhHHHHHhhh
Q psy11352         16 DHCLTSPLSSSIPGSSKTKASGSGTTGGSSNH-SKLFATCF--VCGKQLSNQYNLRVHMETH   74 (107)
Q Consensus        16 ~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~-~~~~~~C~--~C~~~f~~~~~l~~H~~~h   74 (107)
                      ..|   ++.|.+...|..|+.  ..|.+.... ....|.|.  .|++.+.....|..|+++.
T Consensus         7 ~~C---~~~f~~~~~l~~Hv~--~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            7 KEC---PESASSLFDLQRHLL--KDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TTC---CCCCSSHHHHHHHHH--HHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCC---CCcCCCHHHHHHHHH--hhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            468   999999999998831  235444211 22479995  8999999999999999864

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=95.11  E-value=0.029  Score=28.20  Aligned_cols=46  Identities=24%  Similarity=0.593  Sum_probs=33.4

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHH
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKH   97 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H   97 (107)
                      ..|.|+.||.++.- ..|..|...-.+ ..|.|..|++.|.. ...+.|
T Consensus         9 V~F~C~~Cgd~lKK-~kv~~H~~~Cr~~~~~SCIDC~~~F~~-~~y~~H   55 (79)
T 1wjv_A            9 VFFTCNACGESVKK-IQVEKHVSNCRNCECLSCIDCGKDFWG-DDYKSH   55 (79)
T ss_dssp             CEEEESSSCCEEET-THHHHHHHHCTTCCEEEETTTTEEEEG-GGTTTC
T ss_pred             eEEEcCCCCCeeec-ccchhHHhhCCCCCcEEecccCCeeCC-CCEeCE
Confidence            67899999977654 567888766666 67899999998874 334444

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=94.40  E-value=0.071  Score=22.59  Aligned_cols=23  Identities=13%  Similarity=0.265  Sum_probs=15.3

Q ss_pred             CeeeCCCCcccccchhhHHHHHh
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHME   72 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~   72 (107)
                      ..+.|..|+..|..-..+..|.+
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhhe
Confidence            44667777777777777776654

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=94.27  E-value=0.034  Score=23.37  Aligned_cols=24  Identities=29%  Similarity=0.265  Sum_probs=21.3

Q ss_pred             CeeeCCCCcccccchhhHHHHHhh
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMET   73 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~   73 (107)
                      ..|.|+.|.+.|.+...|..|...
T Consensus         4 EGFiCP~C~~~l~s~~~L~~Hye~   27 (34)
T 3mjh_B            4 EGFICPQCMKSLGSADELFKHYEA   27 (34)
T ss_dssp             EEEECTTTCCEESSHHHHHHHHHH
T ss_pred             cccCCcHHHHHcCCHHHHHHHHHh
Confidence            469999999999999999999754

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=94.26  E-value=0.0036  Score=34.54  Aligned_cols=60  Identities=12%  Similarity=0.065  Sum_probs=38.9

Q ss_pred             cccccCCCCCCCCCccCCCCCCCCCCCCC----------------------CCCC---CCCCCCCCeeeCCCCcccccch
Q psy11352         10 LHFLISDHCLTSPLSSSIPGSSKTKASGS----------------------GTTG---GSSNHSKLFATCFVCGKQLSNQ   64 (107)
Q Consensus        10 ~~~~~C~~C~~~~~~~~~~~~l~~h~~~~----------------------~~~~---~~~~~~~~~~~C~~C~~~f~~~   64 (107)
                      .+++.|..|   ...|.+...+..|..+.                      ....   .........|.|..|+..|.+.
T Consensus        30 ~~~~~C~~C---~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~  106 (127)
T 1zu1_A           30 FSDTQCKVC---SAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSP  106 (127)
T ss_dssp             BCSSEETTT---TEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETTTTEECSSH
T ss_pred             CCCCcCcCC---CCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCCCCCEeCCH
Confidence            467889999   88887666555552110                      0000   0011123568899999999999


Q ss_pred             hhHHHHHh
Q psy11352         65 YNLRVHME   72 (107)
Q Consensus        65 ~~l~~H~~   72 (107)
                      ..+..|..
T Consensus       107 ~~~~~H~~  114 (127)
T 1zu1_A          107 VVAESHYI  114 (127)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHC
Confidence            99999975

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=93.82  E-value=0.027  Score=29.93  Aligned_cols=28  Identities=25%  Similarity=0.417  Sum_probs=18.3

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCCc
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHV   87 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~~   87 (107)
                      .++.|..||..|..          -.++|-.|+.|+..
T Consensus        66 ~p~~C~~CG~~F~~----------~~~kPsrCP~CkSe   93 (105)
T 2gmg_A           66 KPAQCRKCGFVFKA----------EINIPSRCPKCKSE   93 (105)
T ss_dssp             CCCBBTTTCCBCCC----------CSSCCSSCSSSCCC
T ss_pred             ECcChhhCcCeecc----------cCCCCCCCcCCCCC
Confidence            56788888888711          11267788888654

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=93.77  E-value=0.071  Score=22.57  Aligned_cols=29  Identities=14%  Similarity=0.117  Sum_probs=23.6

Q ss_pred             CcccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      ..+.|..|+-.|....++..|.+. --..+
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk~-YC~s~   35 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQF-YCKNK   35 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHHH-TSCCC
T ss_pred             CcCeeccccceehhhHHHhhhhee-cCCCC
Confidence            478899999999999999999983 43333

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=93.63  E-value=0.082  Score=22.91  Aligned_cols=25  Identities=24%  Similarity=0.493  Sum_probs=18.7

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQ   75 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~   75 (107)
                      ..+.|+.|++.+.. ..+..|...|.
T Consensus         8 ~~~~C~~C~~~i~~-~~~~EH~D~H~   32 (39)
T 2i5o_A            8 DQVPCEKCGSLVPV-WDMPEHMDYHF   32 (39)
T ss_dssp             CEEECTTTCCEEEG-GGHHHHHHHHH
T ss_pred             CCcccccccCcCCc-ccccchhhHHH
Confidence            56889999888877 45677877764

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=92.49  E-value=0.099  Score=31.11  Aligned_cols=25  Identities=28%  Similarity=0.670  Sum_probs=19.9

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSH   86 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~   86 (107)
                      ..|.|..||..+.-            ..|+.|+.|+.
T Consensus       170 ~~~~C~~CG~i~~g------------~~p~~CP~C~~  194 (202)
T 1yuz_A          170 KFHLCPICGYIHKG------------EDFEKCPICFR  194 (202)
T ss_dssp             CEEECSSSCCEEES------------SCCSBCTTTCC
T ss_pred             cEEEECCCCCEEcC------------cCCCCCCCCCC
Confidence            67999999987641            26899999985

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=92.42  E-value=0.081  Score=23.81  Aligned_cols=35  Identities=20%  Similarity=0.346  Sum_probs=18.7

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSH   86 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~   86 (107)
                      +.|.|.+||..|.-...-.  .....- ..|.|+.||.
T Consensus         3 ~~y~C~vCGyvyd~~~Gd~--t~f~~lP~dw~CP~Cg~   38 (46)
T 6rxn_A            3 QKYVCNVCGYEYDPAEHDN--VPFDQLPDDWCCPVCGV   38 (46)
T ss_dssp             CCEEETTTCCEECGGGGTT--CCGGGSCTTCBCTTTCC
T ss_pred             CEEECCCCCeEEeCCcCCC--cchhhCCCCCcCcCCCC
Confidence            4578888888775432111  000011 3468888874

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=92.15  E-value=0.15  Score=23.64  Aligned_cols=21  Identities=29%  Similarity=0.678  Sum_probs=18.4

Q ss_pred             eeCCCCcccccchhhHHHHHh
Q psy11352         52 ATCFVCGKQLSNQYNLRVHME   72 (107)
Q Consensus        52 ~~C~~C~~~f~~~~~l~~H~~   72 (107)
                      -.|..|+..|....+++.|+-
T Consensus        14 ~eC~lC~vkYs~r~slqDHIF   34 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIF   34 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHT
T ss_pred             ccccccCcccccccchhhhhc
Confidence            489999999999999999874

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=90.97  E-value=0.43  Score=23.36  Aligned_cols=45  Identities=22%  Similarity=0.391  Sum_probs=19.8

Q ss_pred             eeC-CCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHHH
Q psy11352         52 ATC-FVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKHV   98 (107)
Q Consensus        52 ~~C-~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~   98 (107)
                      -.| ..|+..+.. ..|..|+...-. ++..|..|+..|.. ..|..|.
T Consensus        17 v~C~~~C~~~v~r-~~l~~H~~~~C~~r~v~C~~C~~~~~~-~~l~~H~   63 (76)
T 2yuc_A           17 IPCPNRCPMKLSR-RDLPAHLQHDCPKRRLKCEFCGCDFSG-EAYESHE   63 (76)
T ss_dssp             CBCTTCCSCBCCS-SSSTTTTTTSCTTSCCCCSSSCCCCCH-HHHHHTT
T ss_pred             cCCCccccHHhhH-hHHHhhCHhhCCCcceECCCCCCccCH-HHHHHHH
Confidence            345 345544432 334444432222 44555555555432 2344443

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=90.69  E-value=0.095  Score=26.89  Aligned_cols=29  Identities=24%  Similarity=0.512  Sum_probs=23.1

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-CcccC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AFYAC   81 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C   81 (107)
                      ....|-+||+.|..   |.+|+..+.| .|..+
T Consensus        20 d~iiClecGK~fK~---LkRHL~~~hgltpeeY   49 (87)
T 2jsp_A           20 DHIVCLECGGSFKS---LKRHLTTHHSMTPEEY   49 (87)
T ss_dssp             SCEECTBTCCEESB---HHHHHHHTTCSCHHHH
T ss_pred             CceEecccchhhHH---HHHHHHHccCCCHHHH
Confidence            45689999999874   7799998777 78765

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.67  E-value=0.04  Score=27.59  Aligned_cols=11  Identities=64%  Similarity=1.286  Sum_probs=5.6

Q ss_pred             eeCCCCccccc
Q psy11352         52 ATCFVCGKQLS   62 (107)
Q Consensus        52 ~~C~~C~~~f~   62 (107)
                      -.|..|++.+.
T Consensus        29 A~Ck~C~k~ls   39 (76)
T 2djr_A           29 ATCRLCGRQVS   39 (76)
T ss_dssp             EEESSSCCBCC
T ss_pred             EECCCCCCccC
Confidence            44555555543

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=90.00  E-value=0.28  Score=19.59  Aligned_cols=22  Identities=23%  Similarity=0.336  Sum_probs=17.7

Q ss_pred             eeeCCCCcccccchhhHHHHHh
Q psy11352         51 FATCFVCGKQLSNQYNLRVHME   72 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~   72 (107)
                      .|.|++|.........++.|..
T Consensus         3 k~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            3 DFCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             CEECTTSSCEESSHHHHHHHHH
T ss_pred             cccCccccccCcChHHHHHHHH
Confidence            4789999888888888888753

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=89.80  E-value=0.51  Score=19.33  Aligned_cols=22  Identities=32%  Similarity=0.502  Sum_probs=14.1

Q ss_pred             eeeCCCCcccccchhhHHHHHh
Q psy11352         51 FATCFVCGKQLSNQYNLRVHME   72 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~   72 (107)
                      ...|..|.+.|....+|..|++
T Consensus         9 kqhcrfckkkysdvknlikhir   30 (37)
T 2elu_A            9 KQHCRFCKKKYSDVKNLIKHIR   30 (37)
T ss_dssp             CCEETTTTEECSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666666666666666665

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=89.69  E-value=0.27  Score=28.45  Aligned_cols=25  Identities=24%  Similarity=0.515  Sum_probs=19.6

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSH   86 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~   86 (107)
                      ..|.|..||..+..            ..|-.|+.||.
T Consensus       137 ~~~~C~~CG~i~~~------------~~p~~CP~Cg~  161 (170)
T 3pwf_A          137 KVYICPICGYTAVD------------EAPEYCPVCGA  161 (170)
T ss_dssp             CEEECTTTCCEEES------------CCCSBCTTTCC
T ss_pred             CeeEeCCCCCeeCC------------CCCCCCCCCCC
Confidence            67999999988741            25779999984

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=89.28  E-value=0.11  Score=26.23  Aligned_cols=37  Identities=24%  Similarity=0.464  Sum_probs=24.5

Q ss_pred             eeCCCCcccccchhhHHHHHhhhC----------------C-CcccCCCCCCccc
Q psy11352         52 ATCFVCGKQLSNQYNLRVHMETHQ----------------N-AFYACSSCSHVSR   89 (107)
Q Consensus        52 ~~C~~C~~~f~~~~~l~~H~~~h~----------------~-k~~~C~~C~~~f~   89 (107)
                      -+|+.||....+.. |...|.+-.                . -.|+|+.||..|.
T Consensus         9 ~~~PlCG~~L~W~e-LIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFy   62 (95)
T 2k5c_A            9 AKCPICGSPLKWEE-LIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFY   62 (95)
T ss_dssp             EECSSSCCEECHHH-HHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEE
T ss_pred             ccCCcCCCccCHHH-HHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHh
Confidence            57999999876654 444443211                1 2589999998775

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=88.10  E-value=0.48  Score=22.75  Aligned_cols=29  Identities=24%  Similarity=0.575  Sum_probs=21.4

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCCcc
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVS   88 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~~f   88 (107)
                      ..|.|..||..+...          .+.+.+|+.||...
T Consensus        20 v~Y~C~~Cg~~~~l~----------~~~~iRC~~CG~RI   48 (63)
T 3h0g_L           20 MIYLCADCGARNTIQ----------AKEVIRCRECGHRV   48 (63)
T ss_dssp             CCCBCSSSCCBCCCC----------SSSCCCCSSSCCCC
T ss_pred             eEEECCCCCCeeecC----------CCCceECCCCCcEE
Confidence            669999999887643          12578899998654

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=87.19  E-value=0.57  Score=22.98  Aligned_cols=27  Identities=30%  Similarity=0.615  Sum_probs=20.7

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSH   86 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~   86 (107)
                      ..|.|..||..|...          .+.+..|+.||.
T Consensus        27 v~Y~C~~CG~~~e~~----------~~d~irCp~CG~   53 (70)
T 1twf_L           27 LKYICAECSSKLSLS----------RTDAVRCKDCGH   53 (70)
T ss_dssp             CCEECSSSCCEECCC----------TTSTTCCSSSCC
T ss_pred             EEEECCCCCCcceeC----------CCCCccCCCCCc
Confidence            679999999987653          224568999997

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=86.84  E-value=0.98  Score=20.26  Aligned_cols=13  Identities=8%  Similarity=-0.015  Sum_probs=5.6

Q ss_pred             cccCCCCCCCCCccCC
Q psy11352         12 FLISDHCLTSPLSSSI   27 (107)
Q Consensus        12 ~~~C~~C~~~~~~~~~   27 (107)
                      .|.|--|   +..|+.
T Consensus         3 iY~C~rC---g~~fs~   15 (48)
T 4ayb_P            3 VYRCGKC---WKTFTD   15 (48)
T ss_dssp             --CCCCT---TTTCCC
T ss_pred             EEEeecc---CCCccH
Confidence            3555555   555443

>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative C-like transposable element, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6

Probab=86.76  E-value=0.11  Score=25.75  Aligned_cols=11  Identities=27%  Similarity=0.428  Sum_probs=5.6

Q ss_pred             HHHHHHHHccC
Q psy11352         92 DALRKHVSYRH  102 (107)
Q Consensus        92 ~~l~~H~~~~H  102 (107)
                      ++|.+|++.+|
T Consensus        46 SnL~rHL~~~H   56 (73)
T 2ct5_A           46 SNLSYHLEKNH   56 (73)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HhHHHHHHHHC
Confidence            34555555444

>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}

Probab=86.36  E-value=1.1  Score=22.64  Aligned_cols=14  Identities=21%  Similarity=0.626  Sum_probs=10.9

Q ss_pred             CeeeCCCCcccccc
Q psy11352         50 LFATCFVCGKQLSN   63 (107)
Q Consensus        50 ~~~~C~~C~~~f~~   63 (107)
                      ..|.|.+||..|.-
T Consensus        26 ~~y~C~vCGyvYD~   39 (81)
T 2kn9_A           26 KLFRCIQCGFEYDE   39 (81)
T ss_dssp             CEEEETTTCCEEET
T ss_pred             ceEEeCCCCEEEcC
Confidence            56888888888764

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=85.68  E-value=0.55  Score=28.01  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=13.3

Q ss_pred             cccCCCCCCcccC-hHHHHHHHH
Q psy11352         78 FYACSSCSHVSRS-RDALRKHVS   99 (107)
Q Consensus        78 ~~~C~~C~~~f~~-~~~l~~H~~   99 (107)
                      |..|..|+..|.+ -..|+.|+.
T Consensus       169 ~L~C~~C~~~f~n~~~~LK~HL~  191 (204)
T 3sp4_A          169 DLKCWRCGETFGRHFTKLKAHLQ  191 (204)
T ss_dssp             CCBCTTTCCBCTTCHHHHHHHHH
T ss_pred             CceeCCCCchhhcccHHHHHHHH
Confidence            5566666666654 556666655

>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A

Probab=85.59  E-value=1.7  Score=19.91  Aligned_cols=7  Identities=14%  Similarity=0.652  Sum_probs=4.8

Q ss_pred             cccCCCC
Q psy11352         12 FLISDHC   18 (107)
Q Consensus        12 ~~~C~~C   18 (107)
                      .|+|..|
T Consensus         3 ~y~C~~C    9 (52)
T 1e8j_A            3 IYVCTVC    9 (52)
T ss_dssp             CEECSSS
T ss_pred             cEEeCCC
Confidence            4677777

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=84.81  E-value=0.2  Score=25.53  Aligned_cols=11  Identities=27%  Similarity=0.667  Sum_probs=6.0

Q ss_pred             cccCCCCCCcc
Q psy11352         78 FYACSSCSHVS   88 (107)
Q Consensus        78 ~~~C~~C~~~f   88 (107)
                      -+.|+.|+..|
T Consensus        45 iW~C~~Cg~~~   55 (83)
T 1vq8_Z           45 IWQCSYCDYKF   55 (83)
T ss_dssp             EEEETTTCCEE
T ss_pred             eEECCCCCCEe
Confidence            45566665544

>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}

Probab=84.71  E-value=0.79  Score=24.73  Aligned_cols=27  Identities=19%  Similarity=0.469  Sum_probs=20.4

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCCCcc-cCCCCCCc
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQNAFY-ACSSCSHV   87 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~-~C~~C~~~   87 (107)
                      ..+.|..||..|...           ..++ .|+.||..
T Consensus        72 ~~~~C~~CG~~~e~~-----------~~~~~~CP~Cgs~   99 (119)
T 2kdx_A           72 VELECKDCSHVFKPN-----------ALDYGVCEKCHSK   99 (119)
T ss_dssp             CEEECSSSSCEECSC-----------CSTTCCCSSSSSC
T ss_pred             ceEEcCCCCCEEeCC-----------CCCCCcCccccCC
Confidence            468999999988752           2467 89999854

>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A

Probab=84.19  E-value=0.39  Score=28.25  Aligned_cols=26  Identities=27%  Similarity=0.483  Sum_probs=18.7

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSH   86 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~   86 (107)
                      ..|.|..||..+.-.           ..|-.|+.||.
T Consensus       154 ~~~~C~~CG~~~~g~-----------~~p~~CP~C~~  179 (191)
T 1lko_A          154 TKWRCRNCGYVHEGT-----------GAPELCPACAH  179 (191)
T ss_dssp             EEEEETTTCCEEEEE-----------ECCSBCTTTCC
T ss_pred             ceEEECCCCCEeeCC-----------CCCCCCCCCcC
Confidence            468999999876511           14668999985

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=83.37  E-value=0.9  Score=24.79  Aligned_cols=27  Identities=11%  Similarity=0.385  Sum_probs=21.2

Q ss_pred             CCeeeCCCCcccccchhhHHHHHhhhC
Q psy11352         49 KLFATCFVCGKQLSNQYNLRVHMETHQ   75 (107)
Q Consensus        49 ~~~~~C~~C~~~f~~~~~l~~H~~~h~   75 (107)
                      ..+..|-.|...|.....+..|++...
T Consensus        13 ~~~~~CLFCd~~~~s~~~~l~H~k~~H   39 (121)
T 1wir_A           13 RQHTPCLFCDRLFASAEETFSHCKLEH   39 (121)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHSS
T ss_pred             CCceeEecCCCcccCHHHHHHHHHHhc
Confidence            367888888888888888888887543

>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z

Probab=83.00  E-value=0.37  Score=26.05  Aligned_cols=31  Identities=19%  Similarity=0.409  Sum_probs=17.4

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCCccc
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVSR   89 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~~f~   89 (107)
                      ..|.|+.||+.-....        -. .-+.|..|++.|.
T Consensus        59 akytCPfCGk~~vKR~--------av-GIW~C~~Cgk~fA   89 (116)
T 3cc2_Z           59 EDHACPNCGEDRVDRQ--------GT-GIWQCSYCDYKFT   89 (116)
T ss_dssp             SCEECSSSCCEEEEEE--------ET-TEEEETTTCCEEE
T ss_pred             cCCcCCCCCCceeEec--------Cc-eeEECCCCCCEEE
Confidence            4577888876311110        11 3577888887764

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=82.58  E-value=1.2  Score=26.65  Aligned_cols=24  Identities=21%  Similarity=0.581  Sum_probs=20.1

Q ss_pred             CCeeeCCCCcccccc-hhhHHHHHh
Q psy11352         49 KLFATCFVCGKQLSN-QYNLRVHME   72 (107)
Q Consensus        49 ~~~~~C~~C~~~f~~-~~~l~~H~~   72 (107)
                      +.+..|..|+..|.+ -..|+.|+.
T Consensus       167 ~~~L~C~~C~~~f~n~~~~LK~HL~  191 (204)
T 3sp4_A          167 QEDLKCWRCGETFGRHFTKLKAHLQ  191 (204)
T ss_dssp             GSCCBCTTTCCBCTTCHHHHHHHHH
T ss_pred             CCCceeCCCCchhhcccHHHHHHHH
Confidence            368999999999987 788988863

>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1

Probab=80.50  E-value=0.78  Score=26.88  Aligned_cols=37  Identities=24%  Similarity=0.518  Sum_probs=26.1

Q ss_pred             hhHHHHHhhhC--CC------cccCCCCCCcccChHHHHHHHHccCC
Q psy11352         65 YNLRVHMETHQ--NA------FYACSSCSHVSRSRDALRKHVSYRHP  103 (107)
Q Consensus        65 ~~l~~H~~~h~--~k------~~~C~~C~~~f~~~~~l~~H~~~~H~  103 (107)
                      ..|..|++...  |+      -|+|..||+ +..-.+|.+|++. |.
T Consensus       133 grlieHlK~~~~~GqDyvFWQFYKCe~CgK-YvDId~~~~Hlk~-Hg  177 (226)
T 2czr_A          133 AALVNHIKNNALAGQDYIFWQFYKCEECGK-YVDIENLEAHLRE-HG  177 (226)
T ss_dssp             HHHHHHHHTTCCBTTTEEEEEEEECTTTCC-EEEGGGHHHHHHT-TT
T ss_pred             HHHHHHHHhccccCcceEEEEEEehhhcCc-eecHHHHHHHHHH-cC
Confidence            34677776432  33      478999997 5677789999995 53

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	107
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.82
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.63
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.63
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.57
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.55
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.53
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.51
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.5
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.49
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.49
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.44
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.39
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.38
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.37
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.34
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.34
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.33
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.32
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.31
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.31
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.29
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.27
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.26
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.26
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.25
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.24
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.23
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.06
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.05
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.05
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.03
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.02
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.0
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.0
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.97
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.94
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.93
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.92
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.81
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.78
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.75
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.74
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.71
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.68
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	98.66
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.63
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.54
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.51
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.5
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.45
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.37
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.34
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.34
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.32
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.28
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.28
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.22
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.13
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	98.08
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.08
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.07
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	98.06
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.99
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.99
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.91
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.87
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.85
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.84
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.82
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.79
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.77
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.76
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.68
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.62
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.61
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.53
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	97.53
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.5
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	97.48
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.48
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.32
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.31
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.28
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.2
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	97.19
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.19
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.14
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.04
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.97
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.96
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.87
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.74
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.73
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.68
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.24
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.14
d1y0jb1	36	U-shaped transcription factor, different fingers {	96.1
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.96
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	95.85
d1y0jb1	36	U-shaped transcription factor, different fingers {	95.69
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.66
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.46
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	95.32
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	95.26
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	95.19
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	94.82
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	94.79
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	94.54
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.16
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	94.13
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	93.82
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	93.59
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	92.98
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.51
d1x3ca1	61	Zinc finger protein 292, ZNF292 {Human (Homo sapie	92.06
d2gmga1	105	Hypothetical protein PF0610 {Pyrococcus furiosus [	91.09
d2ghfa1	58	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	90.99
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	90.99
d1fu9a_	36	U-shaped transcription factor, different fingers {	90.21
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	90.12
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	88.98
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	87.46
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	87.37
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	86.85
d1tfia_	50	Transcriptional factor SII, C-terminal domain {Hum	86.77
d2dkta1	74	RING finger and CHY zinc finger domain-containing	86.29
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	85.97
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	84.69
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	84.15
d1s24a_	56	Two-iron rubredoxin {Pseudomonas oleovorans [TaxId	83.84
d1iroa_	53	Rubredoxin {Clostridium pasteurianum [TaxId: 1501]	83.31
d1wjpa2	26	Zinc finger protein 295, ZNF295 {Human (Homo sapie	83.3
d1wfka_	88	Zinc finger FYVE domain containing protein 19 {Mou	82.89
d1twfl_	46	RBP12 subunit of RNA polymerase II {Baker's yeast	82.53
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	82.18
d1qypa_	57	RBP9 subunit of RNA polymerase II {Archaeon Thermo	81.28
d1lkoa2	44	Rubrerythrin, C-terminal domain {Desulfovibrio vul	80.89

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.6e-21  Score=90.52  Aligned_cols=50  Identities=24%  Similarity=0.519  Sum_probs=48.4

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccChHHHHHHHHc
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRSRDALRKHVSY  100 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~  100 (107)
                      ++|.|+ ||+.|.....|..|+++|++ +||.|.+||+.|...+.|..|+++
T Consensus         2 K~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~   52 (53)
T d2csha1           2 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI   52 (53)
T ss_dssp             CCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTT
T ss_pred             cCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhc
Confidence            799995 99999999999999999999 999999999999999999999996

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.8e-17  Score=71.54  Aligned_cols=36  Identities=19%  Similarity=0.280  Sum_probs=32.5

Q ss_pred             HHHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCCC
Q psy11352         69 VHMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHI  105 (107)
Q Consensus        69 ~H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~e  105 (107)
                      +|+++|++ +||.|++||+.|.+.++|.+|+++ |+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~-HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT-HTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTT-TCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCcc-CCCC
Confidence            47788998 999999999999999999999996 9987

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.4e-18  Score=81.24  Aligned_cols=53  Identities=23%  Similarity=0.263  Sum_probs=50.6

Q ss_pred             cccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhh
Q psy11352         10 LHFLISDHCLTSPLSSSIPGSSKTKASGSGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETH   74 (107)
Q Consensus        10 ~~~~~C~~C~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h   74 (107)
                      +|||.|+ |   ++.|.....|..|   +.+|+++     ++|.|++||+.|.....|..|+++|
T Consensus         1 EK~y~C~-C---gk~F~~~~~l~~H---~~~Ht~e-----kpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-C---GKSFTHKSQRDRH---MSMHLGL-----RPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-T---SCEESSHHHHHHH---HHHHSCC-----CSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-C---CCeECCHHHhHHH---hhccccc-----cCCcCCCcCCEecCHHHHHHHHhcC
Confidence            5899995 9   9999999999999   9999999     9999999999999999999999887

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=5.5e-16  Score=65.30  Aligned_cols=32  Identities=22%  Similarity=0.401  Sum_probs=27.9

Q ss_pred             hhCC-CcccCCCCCCcccChHHHHHHHHccCCCC
Q psy11352         73 THQN-AFYACSSCSHVSRSRDALRKHVSYRHPHI  105 (107)
Q Consensus        73 ~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~e  105 (107)
                      +|++ +||.|.+||+.|.+.++|..|+++ |+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~-HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRV-HTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHG-GGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccc-cCCC
Confidence            5788 899999999999999999999996 8886

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.55  E-value=2e-15  Score=61.85  Aligned_cols=29  Identities=17%  Similarity=0.494  Sum_probs=27.1

Q ss_pred             CcccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      +||.|++|++.|.+.+.|.+|+++ |+|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~-HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRS-HTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHT-TTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCc-ccCCC
Confidence            689999999999999999999996 99997

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.1e-15  Score=61.21  Aligned_cols=29  Identities=28%  Similarity=0.515  Sum_probs=26.8

Q ss_pred             CcccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      |||.|++||+.|.+++.|.+|+++ |+|||
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~-HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKT-HQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHG-GGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCc-cCCcC
Confidence            689999999999999999999996 99986

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=7.8e-15  Score=64.00  Aligned_cols=34  Identities=26%  Similarity=0.428  Sum_probs=28.7

Q ss_pred             CeeeCCCCcccccchhhHHHHHh-hhCC-CcccCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHME-THQN-AFYACSS   83 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~-~h~~-k~~~C~~   83 (107)
                      +||.|++||+.|...+.|..|++ +|++ +||.|++
T Consensus         4 Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           4 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            78888889998888888888875 6888 8888864

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.6e-15  Score=63.86  Aligned_cols=34  Identities=21%  Similarity=0.422  Sum_probs=29.1

Q ss_pred             hhhCC-CcccCCCCCCcccChHHHHHHHHccCCCC
Q psy11352         72 ETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHI  105 (107)
Q Consensus        72 ~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~e  105 (107)
                      ++|+| +||.|++|++.|.+.++|..|++.+|+++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~~   35 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN   35 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCCC
Confidence            46888 99999999999999999999987678765

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=7.8e-15  Score=63.18  Aligned_cols=33  Identities=30%  Similarity=0.477  Sum_probs=26.3

Q ss_pred             hhhCC-CcccCCCCCCcccChHHHHHHHHccCCCC
Q psy11352         72 ETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPHI  105 (107)
Q Consensus        72 ~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~e  105 (107)
                      ++|+| +||+|.+||++|.+.++|..|+++ |.++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~-H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKR-YHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHH-TTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcc-cCCC
Confidence            46788 888888888888888888888886 5554

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=6.8e-15  Score=63.79  Aligned_cols=34  Identities=18%  Similarity=0.288  Sum_probs=27.8

Q ss_pred             HHhhhCC-CcccCCCCCCcccChHHHHHHHHccCCC
Q psy11352         70 HMETHQN-AFYACSSCSHVSRSRDALRKHVSYRHPH  104 (107)
Q Consensus        70 H~~~h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~  104 (107)
                      |.++|+| +||+|.+|++.|.+.++|.+|+++ |.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~-H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR-HML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGG-GTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhc-CcC
Confidence            5678888 888888888888888888888886 653

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.8e-14  Score=62.81  Aligned_cols=32  Identities=28%  Similarity=0.474  Sum_probs=29.5

Q ss_pred             CCcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         76 NAFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        76 ~k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      ++||+|.+||+.|...++|.+|++..|+||||
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekp   34 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERP   34 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCC
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcC
Confidence            38999999999999999999998745999998

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=3e-14  Score=60.66  Aligned_cols=31  Identities=13%  Similarity=0.366  Sum_probs=22.1

Q ss_pred             hCC-CcccCCCCCCcccChHHHHHHHHccCCCC
Q psy11352         74 HQN-AFYACSSCSHVSRSRDALRKHVSYRHPHI  105 (107)
Q Consensus        74 h~~-k~~~C~~C~~~f~~~~~l~~H~~~~H~~e  105 (107)
                      |+| +||+|++|++.|.+.++|.+|+++ |+++
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~-Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKV-HTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGG-GTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccc-cCCc
Confidence            456 777777777777777777777775 6654

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=1.2e-14  Score=66.06  Aligned_cols=40  Identities=15%  Similarity=0.301  Sum_probs=32.8

Q ss_pred             hhHHHHHhhhCC-CcccCCC--CCCcccChHHHHHHHHccCCCCC
Q psy11352         65 YNLRVHMETHQN-AFYACSS--CSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        65 ~~l~~H~~~h~~-k~~~C~~--C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      ..|..|+. |++ +||.|.+  |++.|...++|..|+++ |+|||
T Consensus         5 ~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~-Htgek   47 (47)
T d1ncsa_           5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQT-HLEDR   47 (47)
T ss_dssp             SSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHH-HTTTC
T ss_pred             chhcchhh-ccCCCCeECCcCCCCccccCchHHHhhccc-ccCCC
Confidence            34566664 888 8999976  99999999999999996 99886

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.8e-13  Score=59.57  Aligned_cols=34  Identities=26%  Similarity=0.343  Sum_probs=32.5

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      +.+++++     +||.|++||+.|...+.|..|+++|+|
T Consensus         4 ~~~Ht~e-----kpy~C~~CgK~F~~~s~L~~H~r~HtG   37 (38)
T d2cota2           4 EWQQRER-----RRYKCDECGKSFSHSSDLSKHRRTHTG   37 (38)
T ss_dssp             CSCCCCS-----CSSBCSSSCCBCSCHHHHHHHHTTTCC
T ss_pred             CcccCCC-----CCEecCCCCceeeCHHHHHHhCccCCC
Confidence            7889999     999999999999999999999999986

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=5.7e-14  Score=56.82  Aligned_cols=27  Identities=22%  Similarity=0.431  Sum_probs=15.4

Q ss_pred             CcccCCCCCCcccChHHHHHHHHccCCC
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSYRHPH  104 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~~H~~  104 (107)
                      |||+|++|++.|.++++|.+|+++ |+|
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~-HTG   28 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRT-HTG   28 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHH-HHC
T ss_pred             cCccCCCCcCEecccccccccCCC-ccC
Confidence            455566666666666666666554 543

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.1e-13  Score=54.69  Aligned_cols=24  Identities=21%  Similarity=0.416  Sum_probs=15.0

Q ss_pred             CcccCCCCCCcccChHHHHHHHHc
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSY  100 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~  100 (107)
                      |||+|.+||++|.+.+.|.+|+++
T Consensus         1 KPy~C~eCgK~F~~~s~L~~Hqri   24 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRI   24 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccC
Confidence            466666666666666666666664

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=5.4e-13  Score=54.70  Aligned_cols=28  Identities=18%  Similarity=0.319  Sum_probs=25.1

Q ss_pred             CcccCCC--CCCcccChHHHHHHHHccCCCC
Q psy11352         77 AFYACSS--CSHVSRSRDALRKHVSYRHPHI  105 (107)
Q Consensus        77 k~~~C~~--C~~~f~~~~~l~~H~~~~H~~e  105 (107)
                      +||.|+.  |++.|.+.++|.+|+++ |+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~-HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRS-HTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHH-TTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCc-CcCC
Confidence            6899988  99999999999999996 9987

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=7.9e-13  Score=55.44  Aligned_cols=32  Identities=28%  Similarity=0.420  Sum_probs=29.5

Q ss_pred             CCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         40 TTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        40 ~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      +|+++     +||.|.+||+.|...+.|..|+++|+|
T Consensus         1 IHTge-----kpy~C~~Cgk~F~~~~~L~~H~r~Htg   32 (33)
T d1x6ea1           1 IHSGE-----KPYGCVECGKAFSRSSILVQHQRVHTG   32 (33)
T ss_dssp             TTTTC-----CCEECSSSCCEESSHHHHHHHHHGGGC
T ss_pred             CcCCC-----CCeeCCCCCCEeCchHHhHhhccccCC
Confidence            36677     999999999999999999999999986

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=7.4e-13  Score=54.81  Aligned_cols=29  Identities=21%  Similarity=0.408  Sum_probs=26.0

Q ss_pred             CcccCC--CCCCcccChHHHHHHHHccCCCCC
Q psy11352         77 AFYACS--SCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        77 k~~~C~--~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      +||.|+  .|++.|.+.++|.+|+++ |+|||
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~-HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRT-HTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTT-TSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCc-ccccC
Confidence            589995  599999999999999996 99987

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.5e-12  Score=55.81  Aligned_cols=34  Identities=21%  Similarity=0.350  Sum_probs=31.1

Q ss_pred             CCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCCC
Q psy11352         39 GTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQNA   77 (107)
Q Consensus        39 ~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~k   77 (107)
                      ++|+++     +||.|++||+.|...+.|..|+++|.+.
T Consensus         1 R~HTge-----kPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGE-----KPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCC-----CCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCC-----CCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            467888     9999999999999999999999999874

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=5.9e-13  Score=53.76  Aligned_cols=27  Identities=26%  Similarity=0.486  Sum_probs=26.1

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      +||.|++|++.|..++.|..|+++|+|
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             cCccCCCCcCEecccccccccCCCccC
Confidence            899999999999999999999999986

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=7.8e-13  Score=52.18  Aligned_cols=26  Identities=31%  Similarity=0.501  Sum_probs=24.6

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQ   75 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~   75 (107)
                      +||+|++||+.|...+.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            58999999999999999999999985

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=6.4e-13  Score=54.57  Aligned_cols=28  Identities=25%  Similarity=0.351  Sum_probs=23.1

Q ss_pred             CcccCCC--CCCcccChHHHHHHHHccCCCC
Q psy11352         77 AFYACSS--CSHVSRSRDALRKHVSYRHPHI  105 (107)
Q Consensus        77 k~~~C~~--C~~~f~~~~~l~~H~~~~H~~e  105 (107)
                      +||.|+.  |++.|.+.++|.+|+++ |+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~-HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRI-HTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHH-HHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccc-cCCC
Confidence            5888866  88888888888888886 8876

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.26  E-value=1.4e-12  Score=53.18  Aligned_cols=27  Identities=30%  Similarity=0.536  Sum_probs=25.8

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      +||.|++|++.|...+.|.+|+++|+|
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTg   27 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTS
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccC
Confidence            589999999999999999999999998

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.4e-12  Score=53.07  Aligned_cols=27  Identities=33%  Similarity=0.490  Sum_probs=25.8

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      +||.|++||+.|.+++.|..|+++|+|
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Htg   27 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQN   27 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCC
Confidence            589999999999999999999999998

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=3.4e-12  Score=55.07  Aligned_cols=34  Identities=21%  Similarity=0.308  Sum_probs=31.8

Q ss_pred             CCCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         38 SGTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        38 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      .+.|+++     +||.|++|++.|..+..|..|+++|.+
T Consensus         3 ~R~HTge-----KPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           3 TRGSTGI-----KPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             SSTTCCS-----SSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCccCCc-----cCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            6789999     999999999999999999999999864

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3e-12  Score=54.71  Aligned_cols=31  Identities=32%  Similarity=0.687  Sum_probs=27.7

Q ss_pred             eeCCC--CcccccchhhHHHHHhhhCC-CcccCC
Q psy11352         52 ATCFV--CGKQLSNQYNLRVHMETHQN-AFYACS   82 (107)
Q Consensus        52 ~~C~~--C~~~f~~~~~l~~H~~~h~~-k~~~C~   82 (107)
                      |.|+.  |++.|.....|.+|+++|+| +||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            67865  99999999999999999999 999986

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=5e-12  Score=53.63  Aligned_cols=31  Identities=19%  Similarity=0.430  Sum_probs=28.6

Q ss_pred             CCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         41 TGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        41 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ++++     +||.|++|++.|.+...|.+|+++|++
T Consensus         2 ~TGe-----kPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           2 SSGK-----RPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCC-----SCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCC-----ccccCCCCCCcccChHHHHHHccccCC
Confidence            4566     999999999999999999999999986

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=9.3e-11  Score=50.05  Aligned_cols=32  Identities=16%  Similarity=0.486  Sum_probs=28.0

Q ss_pred             CCCCCCCCCCCCeeeCCCCcccccchhhHHHHHhhhC
Q psy11352         39 GTTGGSSNHSKLFATCFVCGKQLSNQYNLRVHMETHQ   75 (107)
Q Consensus        39 ~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   75 (107)
                      ++|+++     +||.|+.|++.|..+..|..|++.+.
T Consensus         1 R~HTge-----kP~~C~~C~k~F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2           1 RTHSGE-----KPYECYICHARFTQSGTMKMHILQKH   32 (36)
T ss_dssp             CCCSCC-----CSEECTTTCCEESCHHHHHHHHHHHS
T ss_pred             CccCCC-----CCEeCCCCcccccchHHHHHHccccc
Confidence            467888     99999999999999999999986543

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.4e-11  Score=51.87  Aligned_cols=28  Identities=18%  Similarity=0.570  Sum_probs=26.0

Q ss_pred             ccCCC--CCCcccChHHHHHHHHccCCCCCC
Q psy11352         79 YACSS--CSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        79 ~~C~~--C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      |.|+.  |++.|.+.+.|.+|+++ |+||||
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~-Htgekp   31 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKL-HSDTRD   31 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHH-HHTSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCe-eCCCCC
Confidence            67876  99999999999999997 999998

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=1.9e-11  Score=49.57  Aligned_cols=27  Identities=26%  Similarity=0.528  Sum_probs=17.1

Q ss_pred             CcccCCC--CCCcccChHHHHHHHHccCCC
Q psy11352         77 AFYACSS--CSHVSRSRDALRKHVSYRHPH  104 (107)
Q Consensus        77 k~~~C~~--C~~~f~~~~~l~~H~~~~H~~  104 (107)
                      +||.|++  |++.|.+.++|.+|+++ |+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~-HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRI-HTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHH-HHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCc-cCC
Confidence            4666655  66666666666666664 554

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.03  E-value=5.2e-11  Score=53.81  Aligned_cols=39  Identities=28%  Similarity=0.517  Sum_probs=33.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCeeeCCC--CcccccchhhHHHHHhhhCC
Q psy11352         29 GSSKTKASGSGTTGGSSNHSKLFATCFV--CGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        29 ~~l~~h~~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~   76 (107)
                      +.+..|   + .+.++     ++|.|++  |++.|...+.|..|+++|+|
T Consensus         5 ~~l~~h---~-~h~ge-----kpy~C~~~~C~k~F~~~~~L~~H~r~Htg   45 (47)
T d1ncsa_           5 GSIDKY---V-KEMPD-----KTFECLFPGCTKTFKRRYNIRSHIQTHLE   45 (47)
T ss_dssp             SSGGGS---C-EEETT-----TEEECCCTTCCCEECSSSSHHHHHHHHTT
T ss_pred             chhcch---h-hccCC-----CCeECCcCCCCccccCchHHHhhcccccC
Confidence            445556   4 37788     9999976  99999999999999999998

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=9.2e-11  Score=47.88  Aligned_cols=27  Identities=30%  Similarity=0.525  Sum_probs=25.2

Q ss_pred             CeeeCCC--CcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFV--CGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~   76 (107)
                      +||.|+.  |++.|..++.|.+|+++|+|
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcC
Confidence            5799977  99999999999999999987

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=1.9e-10  Score=47.63  Aligned_cols=28  Identities=21%  Similarity=0.421  Sum_probs=20.7

Q ss_pred             CcccCCC--CCCcccChHHHHHHHHccCCCC
Q psy11352         77 AFYACSS--CSHVSRSRDALRKHVSYRHPHI  105 (107)
Q Consensus        77 k~~~C~~--C~~~f~~~~~l~~H~~~~H~~e  105 (107)
                      +||.|+.  |++.|.+.++|.+|+++ |+.+
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~-Ht~k   31 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKS-HQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGG-GTCC
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhh-ccCC
Confidence            5777866  88888888888888875 6543

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.2e-10  Score=47.64  Aligned_cols=27  Identities=37%  Similarity=0.710  Sum_probs=25.0

Q ss_pred             CeeeCCC--CcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFV--CGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~   76 (107)
                      +||.|+.  |++.|...+.|.+|+++|+|
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCC
Confidence            5899976  99999999999999999986

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=7e-11  Score=47.36  Aligned_cols=24  Identities=21%  Similarity=0.447  Sum_probs=16.8

Q ss_pred             CcccCCC--CCCcccChHHHHHHHHc
Q psy11352         77 AFYACSS--CSHVSRSRDALRKHVSY  100 (107)
Q Consensus        77 k~~~C~~--C~~~f~~~~~l~~H~~~  100 (107)
                      +||.|+.  ||+.|++.++|.+|+++
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~   26 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILT   26 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhh
Confidence            4677765  77777777777777775

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.8e-10  Score=46.85  Aligned_cols=27  Identities=30%  Similarity=0.507  Sum_probs=24.6

Q ss_pred             CeeeC--CCCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATC--FVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C--~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      +||.|  +.|++.|...+.|.+|+++|+|
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Htg   29 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccc
Confidence            47899  4699999999999999999998

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.93  E-value=2.2e-10  Score=46.34  Aligned_cols=27  Identities=26%  Similarity=0.501  Sum_probs=24.8

Q ss_pred             CeeeCCC--CcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFV--CGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~   76 (107)
                      +||.|++  |++.|.+.+.|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            5899966  99999999999999999986

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=5.8e-10  Score=41.94  Aligned_cols=26  Identities=23%  Similarity=0.501  Sum_probs=20.0

Q ss_pred             cccCCCCCCcccChHHHHHHHHccCCC
Q psy11352         78 FYACSSCSHVSRSRDALRKHVSYRHPH  104 (107)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~~H~~  104 (107)
                      |.+|+.|++.|+++..|..|++. |+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~-htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRC-HTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGG-CCC
T ss_pred             CCccchhhhHhcchhHHHHHhhc-cCC
Confidence            56788888888888888888884 765

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=9.4e-10  Score=43.97  Aligned_cols=26  Identities=31%  Similarity=0.537  Sum_probs=23.3

Q ss_pred             CeeeCCC--CcccccchhhHHHHHhhhC
Q psy11352         50 LFATCFV--CGKQLSNQYNLRVHMETHQ   75 (107)
Q Consensus        50 ~~~~C~~--C~~~f~~~~~l~~H~~~h~   75 (107)
                      +||.|+.  ||+.|...+.|.+|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            4789966  9999999999999999985

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.8e-09  Score=40.58  Aligned_cols=26  Identities=38%  Similarity=0.676  Sum_probs=24.1

Q ss_pred             eeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         51 FATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      |++|+.|++.|..+..|..|++.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            47899999999999999999999986

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.75  E-value=3.3e-09  Score=43.77  Aligned_cols=27  Identities=26%  Similarity=0.389  Sum_probs=25.2

Q ss_pred             CeeeCCC--CcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFV--CGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~   76 (107)
                      +||.|+.  |++.|...+.|.+|+++|+.
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            7899976  99999999999999999985

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=4.2e-09  Score=40.78  Aligned_cols=24  Identities=21%  Similarity=0.470  Sum_probs=16.1

Q ss_pred             CcccCCCCCCcccChHHHHHHHHc
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSY  100 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~  100 (107)
                      +||.|..||+.|.++....+|.++
T Consensus         2 kPf~C~~CgrkFArsderkRH~ki   25 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTKI   25 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGG
T ss_pred             CCcccchhhhhhhcchhhhhhhhh
Confidence            566666666666666666666664

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=5.7e-09  Score=41.92  Aligned_cols=30  Identities=30%  Similarity=0.594  Sum_probs=19.6

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-Ccc
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AFY   79 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~   79 (107)
                      +...|+.||+.|.....|.+|...|++ +||
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            445666666666666666666666666 665

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=6.6e-09  Score=41.73  Aligned_cols=30  Identities=27%  Similarity=0.422  Sum_probs=27.6

Q ss_pred             CcccCCCCCCcccChHHHHHHHHccCCCCCC
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSYRHPHISP  107 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~~H~~ekp  107 (107)
                      +...|+.||+.|.....|.+|.-. |++|||
T Consensus         4 k~~~ce~cgk~frdvyhlnrhkls-hs~ekp   33 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLS-HSGEKP   33 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGG-SCSCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcc-cCCCCC
Confidence            567899999999999999999985 999998

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.4e-08  Score=39.44  Aligned_cols=30  Identities=23%  Similarity=0.531  Sum_probs=27.2

Q ss_pred             CcccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      +||+|..|.......++|..|+++.|..|+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhskek   30 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccccccccccccchhhhhhhhcccccCC
Confidence            689999999999999999999999898875

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=1.7e-08  Score=39.02  Aligned_cols=26  Identities=19%  Similarity=0.455  Sum_probs=24.7

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQ   75 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~   75 (107)
                      +||.|++||+.|..+....+|.++|.
T Consensus         2 kPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCcccchhhhhhhcchhhhhhhhhcc
Confidence            79999999999999999999999986

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=3.9e-08  Score=37.57  Aligned_cols=26  Identities=19%  Similarity=0.391  Sum_probs=16.4

Q ss_pred             ccCCCCCCcccChHHHHHHHHccCCCC
Q psy11352         79 YACSSCSHVSRSRDALRKHVSYRHPHI  105 (107)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~~H~~e  105 (107)
                      ..|.+||+.|...+.|.+|+- +|+||
T Consensus         3 hvc~ecgkaf~essklkrh~l-vhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQL-VHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGG-GTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhh-cccCC
Confidence            346666666666666666666 36664

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=4.5e-08  Score=37.57  Aligned_cols=28  Identities=25%  Similarity=0.437  Sum_probs=19.7

Q ss_pred             CcccCCCCCCcccChHHHHHHHHccCCCC
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSYRHPHI  105 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~~H~~e  105 (107)
                      +||+|..|...-..++.|..|++. |+|+
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~-htgd   29 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRS-HTGD   29 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTT-CCSC
T ss_pred             CcceeeecccccCCchheEEeeec-ccCc
Confidence            477777777777777777777774 7663

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=8.1e-08  Score=37.01  Aligned_cols=27  Identities=26%  Similarity=0.688  Sum_probs=22.9

Q ss_pred             ccCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         79 YACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      |.|+.||......+-|..|+++ |++|+
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRs-HT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRT-HTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH-TSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHH-hcCCC
Confidence            7788888888888888999986 88875

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=9.1e-08  Score=36.51  Aligned_cols=26  Identities=27%  Similarity=0.539  Sum_probs=24.0

Q ss_pred             eeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         51 FATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      .+.|.+||+.|..++.|++|+.+|+|
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccC
Confidence            36899999999999999999999986

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=1.6e-07  Score=35.32  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=19.2

Q ss_pred             cCCCCCCcccChHHHHHHHHccCCCCC
Q psy11352         80 ACSSCSHVSRSRDALRKHVSYRHPHIS  106 (107)
Q Consensus        80 ~C~~C~~~f~~~~~l~~H~~~~H~~ek  106 (107)
                      +|+.|.+.|.++..|..|-+. |+|||
T Consensus         2 qcp~c~k~f~skyylkvhnr~-htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRK-HTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHH-HSSCC
T ss_pred             cCcchHHHHHHhHhhhhcccc-ccCCC
Confidence            577777777777777777774 77775

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2e-07  Score=36.45  Aligned_cols=26  Identities=35%  Similarity=0.608  Sum_probs=17.7

Q ss_pred             CcccCCC--CCCcccChHHHHHHHHccC
Q psy11352         77 AFYACSS--CSHVSRSRDALRKHVSYRH  102 (107)
Q Consensus        77 k~~~C~~--C~~~f~~~~~l~~H~~~~H  102 (107)
                      +||.|..  |++.+...++|+.|++++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            4677755  7777777777777777544

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1e-07  Score=37.33  Aligned_cols=24  Identities=25%  Similarity=0.527  Sum_probs=15.7

Q ss_pred             CcccCCCCCCcccChHHHHHHHHc
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSY  100 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~  100 (107)
                      +||.|++|+..|.++..+.-|.+.
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrs   25 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRS   25 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHH
T ss_pred             CCcccchHHHHhhccccceEeeec
Confidence            466666666666666666666664

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=2e-07  Score=39.40  Aligned_cols=25  Identities=28%  Similarity=0.596  Sum_probs=19.1

Q ss_pred             CC-CcccCCCCCCcccChHHHHHHHH
Q psy11352         75 QN-AFYACSSCSHVSRSRDALRKHVS   99 (107)
Q Consensus        75 ~~-k~~~C~~C~~~f~~~~~l~~H~~   99 (107)
                      +| |||.|..|++.|.+..++.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            35 78888888888888888777754

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.28  E-value=3.3e-07  Score=36.16  Aligned_cols=27  Identities=30%  Similarity=0.535  Sum_probs=22.0

Q ss_pred             cccCCCCCCcccChHHHHHHHHccCCC
Q psy11352         78 FYACSSCSHVSRSRDALRKHVSYRHPH  104 (107)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~~H~~  104 (107)
                      ||.|.+|++.|++..-|.+|+...|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            688888888888888888888776765

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=2.5e-07  Score=36.19  Aligned_cols=27  Identities=22%  Similarity=0.516  Sum_probs=25.7

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      +||.|++|+..|..+..+..|.+.|.|
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCcccchHHHHhhccccceEeeecccC
Confidence            789999999999999999999999987

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=6e-07  Score=34.35  Aligned_cols=27  Identities=26%  Similarity=0.448  Sum_probs=25.4

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      +||+|..|.....+++.|..|++.|+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            789999999999999999999999986

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=5e-07  Score=35.62  Aligned_cols=28  Identities=25%  Similarity=0.406  Sum_probs=19.8

Q ss_pred             CcccCCC--CCCcccChHHHHHHH-HccCCCC
Q psy11352         77 AFYACSS--CSHVSRSRDALRKHV-SYRHPHI  105 (107)
Q Consensus        77 k~~~C~~--C~~~f~~~~~l~~H~-~~~H~~e  105 (107)
                      +||.|+.  |.|.|+..+....|+ ++ |..|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRT-Hs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRT-HSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHT-TCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccc-ccCC
Confidence            5777765  888888888777886 54 6543

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=98.08  E-value=2.3e-06  Score=31.58  Aligned_cols=24  Identities=29%  Similarity=0.620  Sum_probs=17.9

Q ss_pred             ccCCCCCCcccChHHHHHHHHccCC
Q psy11352         79 YACSSCSHVSRSRDALRKHVSYRHP  103 (107)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~~H~  103 (107)
                      |+|-.|.+.|..++.|.+|++. |.
T Consensus         1 ykcglcersfveksalsrhqrv-hk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRV-HK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG-TC
T ss_pred             CcccchHHHHHHHHHHHHHHHh-hc
Confidence            5677788888888888888774 53

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.8e-06  Score=32.71  Aligned_cols=23  Identities=26%  Similarity=0.629  Sum_probs=11.7

Q ss_pred             cccCCCCCCcccChHHHHHHHHc
Q psy11352         78 FYACSSCSHVSRSRDALRKHVSY  100 (107)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~  100 (107)
                      ||+|..|...-...++|..|+++
T Consensus         3 p~kck~cdyaaadsssl~kh~ri   25 (28)
T d2dmda1           3 PYKCKTCDYAAADSSSLNKHLRI   25 (28)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CcccccccchhcchhhHhhhhhc
Confidence            45555555544455555555554

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=1.9e-06  Score=32.31  Aligned_cols=24  Identities=33%  Similarity=0.721  Sum_probs=22.7

Q ss_pred             eCCCCcccccchhhHHHHHhhhCC
Q psy11352         53 TCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        53 ~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      .|+.|.+.|.++..|..|.+.|+|
T Consensus         2 qcp~c~k~f~skyylkvhnr~htg   25 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTG   25 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSS
T ss_pred             cCcchHHHHHHhHhhhhccccccC
Confidence            599999999999999999999997

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.06  E-value=2.1e-06  Score=35.85  Aligned_cols=26  Identities=38%  Similarity=0.623  Sum_probs=13.8

Q ss_pred             cccCCCCCCcccChHHHHHHHHccCCC
Q psy11352         78 FYACSSCSHVSRSRDALRKHVSYRHPH  104 (107)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~~H~~  104 (107)
                      .|.|..|++.|.+..+|--|++. |..
T Consensus         5 ~~~C~~C~k~F~s~qALGGH~~~-Hr~   30 (37)
T d1njqa_           5 SYTCSFCKREFRSAQALGGHMNV-HRR   30 (37)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHT-TCC
T ss_pred             ccCCCCCCCccCCcccccchHhh-hcc
Confidence            35555555555555555555553 443

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=3.8e-06  Score=31.81  Aligned_cols=26  Identities=19%  Similarity=0.363  Sum_probs=24.4

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQ   75 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~   75 (107)
                      +||+|..|...-...++|..|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            78999999999999999999999986

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=3.6e-06  Score=32.82  Aligned_cols=27  Identities=26%  Similarity=0.463  Sum_probs=22.7

Q ss_pred             CeeeCCC--CcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFV--CGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~   76 (107)
                      +||.|..  |++.+...++|+.|++.+.|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5789955  99999999999999987543

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.91  E-value=3.6e-06  Score=32.22  Aligned_cols=23  Identities=22%  Similarity=0.475  Sum_probs=14.9

Q ss_pred             cccCCC--CCCcccChHHHHHHHHc
Q psy11352         78 FYACSS--CSHVSRSRDALRKHVSY  100 (107)
Q Consensus        78 ~~~C~~--C~~~f~~~~~l~~H~~~  100 (107)
                      ||.|+.  |++.|+..+.|.+|.+.
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekv   27 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKV   27 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhc
Confidence            566643  66777777777777663

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=4.7e-06  Score=31.99  Aligned_cols=23  Identities=26%  Similarity=0.613  Sum_probs=20.9

Q ss_pred             cccCCCCCCcccChHHHHHHHHc
Q psy11352         78 FYACSSCSHVSRSRDALRKHVSY  100 (107)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~  100 (107)
                      ||.|..|...|..+.+|..||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            78899999999999999999984

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=6.8e-06  Score=31.50  Aligned_cols=25  Identities=28%  Similarity=0.539  Sum_probs=23.6

Q ss_pred             eeCCCCcccccchhhHHHHHhhhCC
Q psy11352         52 ATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        52 ~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      |.|+.||......+.|+.|++.|++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~   26 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTD   26 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSS
T ss_pred             ccccccCcccCCHHHHHHHHHHhcC
Confidence            7899999999999999999999987

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=8.4e-06  Score=34.31  Aligned_cols=23  Identities=17%  Similarity=0.359  Sum_probs=21.5

Q ss_pred             CeeeCCCCcccccchhhHHHHHh
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHME   72 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~   72 (107)
                      +||.|..|++.|-+..++.+|..
T Consensus         4 KPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           4 KPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHH
T ss_pred             CceeccchhhhhhhHHHHHHhhh
Confidence            89999999999999999999964

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.82  E-value=9e-06  Score=29.94  Aligned_cols=24  Identities=21%  Similarity=0.494  Sum_probs=21.8

Q ss_pred             eeCCCCcccccchhhHHHHHhhhC
Q psy11352         52 ATCFVCGKQLSNQYNLRVHMETHQ   75 (107)
Q Consensus        52 ~~C~~C~~~f~~~~~l~~H~~~h~   75 (107)
                      |+|..|.+.|..++.|.+|+++|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            579999999999999999999885

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=1.8e-05  Score=30.27  Aligned_cols=27  Identities=33%  Similarity=0.662  Sum_probs=17.7

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ..|.|..|...|.....|+.|+..|+|
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecccC
Confidence            456666666666666666666666654

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.77  E-value=1.4e-05  Score=30.54  Aligned_cols=25  Identities=32%  Similarity=0.452  Sum_probs=22.2

Q ss_pred             CeeeC--CCCcccccchhhHHHHHhhh
Q psy11352         50 LFATC--FVCGKQLSNQYNLRVHMETH   74 (107)
Q Consensus        50 ~~~~C--~~C~~~f~~~~~l~~H~~~h   74 (107)
                      .||.|  +.|++.|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            57888  56999999999999999887

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.76  E-value=1.6e-05  Score=33.09  Aligned_cols=27  Identities=26%  Similarity=0.471  Sum_probs=25.2

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      +.|.|..|++.|.+...|--|++.|..
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~   30 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRR   30 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCC
T ss_pred             CccCCCCCCCccCCcccccchHhhhcc
Confidence            679999999999999999999999975

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.68  E-value=2.1e-05  Score=29.60  Aligned_cols=22  Identities=18%  Similarity=0.513  Sum_probs=18.4

Q ss_pred             cccCCCCCCcccChHHHHHHHH
Q psy11352         78 FYACSSCSHVSRSRDALRKHVS   99 (107)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~   99 (107)
                      ||+|..||+.+-++.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            6888888888888888888865

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.62  E-value=9.5e-06  Score=31.17  Aligned_cols=27  Identities=22%  Similarity=0.356  Sum_probs=14.5

Q ss_pred             cccCC--CCCCcccChHHHHHHHHccCCCC
Q psy11352         78 FYACS--SCSHVSRSRDALRKHVSYRHPHI  105 (107)
Q Consensus        78 ~~~C~--~C~~~f~~~~~l~~H~~~~H~~e  105 (107)
                      ||.|.  .|.+.|.....|.+|.-+ |+||
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~t-htge   30 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLT-HTGE   30 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHH-HHTC
T ss_pred             CcCcccccccccchhhhhhhhhhcc-ccCC
Confidence            45553  255666665556666553 5543

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.7e-05  Score=30.44  Aligned_cols=26  Identities=27%  Similarity=0.521  Sum_probs=17.8

Q ss_pred             CcccCCCCCCcccChHHHHHHHHccC
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSYRH  102 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~~H  102 (107)
                      +||+|..|...-.+.++|..|++..|
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H   26 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFH   26 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHHc
Confidence            36777777766667777777776544

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=2.5e-05  Score=29.87  Aligned_cols=28  Identities=32%  Similarity=0.561  Sum_probs=25.4

Q ss_pred             CcccCCCCCCcccChHHHHHHHHccCCCC
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSYRHPHI  105 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~~H~~e  105 (107)
                      ..|.|..|...|.+.-.|+.|+.. |+||
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvs-htge   30 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVS-HTGE   30 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH-HSSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeeec-ccCC
Confidence            468999999999999999999995 9886

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=3.7e-05  Score=29.01  Aligned_cols=26  Identities=23%  Similarity=0.549  Sum_probs=20.6

Q ss_pred             cccCCCCCCcccChHHHHHHHHccCC
Q psy11352         78 FYACSSCSHVSRSRDALRKHVSYRHP  103 (107)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~~H~  103 (107)
                      .|+|+.|+....+++.|..|++..|+
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlhs   27 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQHS   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             CccCCcchhheeehhhhhHHhhhccc
Confidence            47888888888888888888886553

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.50  E-value=4.1e-05  Score=30.03  Aligned_cols=26  Identities=19%  Similarity=0.369  Sum_probs=22.3

Q ss_pred             eeeCCCCcccccchhhHHHHHh-hhCC
Q psy11352         51 FATCFVCGKQLSNQYNLRVHME-THQN   76 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~-~h~~   76 (107)
                      ||.|.+|++.|....-|.+|+. .|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            6899999999999999999976 4544

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.48  E-value=4.8e-05  Score=28.03  Aligned_cols=24  Identities=29%  Similarity=0.599  Sum_probs=18.2

Q ss_pred             ccCCCCCCcccChHHHHHHHHccC
Q psy11352         79 YACSSCSHVSRSRDALRKHVSYRH  102 (107)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~~H  102 (107)
                      |.|+.|-+.|.++.++..|.++.|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            567788888888888887777655

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=4.8e-05  Score=27.92  Aligned_cols=22  Identities=36%  Similarity=0.650  Sum_probs=13.2

Q ss_pred             cccCCCCCCcccChHHHHHHHH
Q psy11352         78 FYACSSCSHVSRSRDALRKHVS   99 (107)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~   99 (107)
                      ||+|..|...|.++..|+.|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            5566666666666666666553

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=7.3e-05  Score=29.29  Aligned_cols=26  Identities=31%  Similarity=0.379  Sum_probs=20.9

Q ss_pred             CeeeCCC--CcccccchhhHHHHH-hhhC
Q psy11352         50 LFATCFV--CGKQLSNQYNLRVHM-ETHQ   75 (107)
Q Consensus        50 ~~~~C~~--C~~~f~~~~~l~~H~-~~h~   75 (107)
                      +||.|+.  |.+.|.+++.-..|+ ++|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            4788855  999999999888886 7775

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.31  E-value=9.6e-05  Score=28.27  Aligned_cols=27  Identities=26%  Similarity=0.290  Sum_probs=23.3

Q ss_pred             CeeeC--CCCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATC--FVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C--~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      +||.|  +.|.+.|.+...|.+|..+|+|
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHT
T ss_pred             CCcCcccccccccchhhhhhhhhhccccC
Confidence            46788  6799999999999999988875

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00011  Score=28.02  Aligned_cols=23  Identities=26%  Similarity=0.431  Sum_probs=21.1

Q ss_pred             eeeCCCCcccccchhhHHHHHhh
Q psy11352         51 FATCFVCGKQLSNQYNLRVHMET   73 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~~   73 (107)
                      ||.|..|+..|..+.+|..|+..
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            68999999999999999999975

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.20  E-value=0.00012  Score=27.50  Aligned_cols=22  Identities=32%  Similarity=0.345  Sum_probs=19.7

Q ss_pred             eeeCCCCcccccchhhHHHHHh
Q psy11352         51 FATCFVCGKQLSNQYNLRVHME   72 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~   72 (107)
                      ||+|..||+.|..+.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            5899999999999999998864

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00016  Score=28.92  Aligned_cols=22  Identities=23%  Similarity=0.682  Sum_probs=13.5

Q ss_pred             cccCCCCCCcccChHHHHHHHH
Q psy11352         78 FYACSSCSHVSRSRDALRKHVS   99 (107)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~   99 (107)
                      .|.|..||+.|.+...+.+|..
T Consensus         4 afvcskcgktftrrntm~rha~   25 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHAD   25 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHH
T ss_pred             eeeecccccchhcchHHHHHhh
Confidence            3556666666666666666655

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00023  Score=29.39  Aligned_cols=25  Identities=32%  Similarity=0.551  Sum_probs=16.5

Q ss_pred             CeeeC--CCCcccccchhhHHHHHhhh
Q psy11352         50 LFATC--FVCGKQLSNQYNLRVHMETH   74 (107)
Q Consensus        50 ~~~~C--~~C~~~f~~~~~l~~H~~~h   74 (107)
                      +||.|  +.|+..|.+...|..|...|
T Consensus         5 kPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           5 KPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CceecCCCCccccccchHHHHHhhhhh
Confidence            66676  55666777666666666555

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00021  Score=27.37  Aligned_cols=26  Identities=23%  Similarity=0.439  Sum_probs=22.0

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQ   75 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~   75 (107)
                      +||.|..|......+++|..|+.+-.
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            47899999999899999999988643

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.00028  Score=25.82  Aligned_cols=22  Identities=27%  Similarity=0.499  Sum_probs=20.0

Q ss_pred             eeeCCCCcccccchhhHHHHHh
Q psy11352         51 FATCFVCGKQLSNQYNLRVHME   72 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~   72 (107)
                      ||+|..|...|-.+..|+.|+.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999975

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00043  Score=27.66  Aligned_cols=27  Identities=19%  Similarity=0.427  Sum_probs=23.4

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ..|.|..||++|.....+.+|.....|
T Consensus         3 ~afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             ceeeecccccchhcchHHHHHhhhcCC
Confidence            358999999999999999999876665

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00029  Score=29.08  Aligned_cols=24  Identities=21%  Similarity=0.404  Sum_probs=21.8

Q ss_pred             CcccC--CCCCCcccChHHHHHHHHc
Q psy11352         77 AFYAC--SSCSHVSRSRDALRKHVSY  100 (107)
Q Consensus        77 k~~~C--~~C~~~f~~~~~l~~H~~~  100 (107)
                      +||.|  +.|+..|.+...|..|...
T Consensus         5 kPF~C~~pGC~q~F~neDhL~vHk~K   30 (38)
T d1bhia_           5 KPFLCTAPGCGQRFTNEDHLAVHKHK   30 (38)
T ss_dssp             CCEECCCTTTCCEESSHHHHHHHHHH
T ss_pred             CceecCCCCccccccchHHHHHhhhh
Confidence            89999  5699999999999999874

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00056  Score=25.74  Aligned_cols=23  Identities=39%  Similarity=0.496  Sum_probs=13.9

Q ss_pred             cccCCCCCCcccChHHHHHHHHc
Q psy11352         78 FYACSSCSHVSRSRDALRKHVSY  100 (107)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~  100 (107)
                      |-+|+.|....+++..|+.|.++
T Consensus         2 pekc~ecsyscsskaalrvh~ri   24 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERI   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGG
T ss_pred             CccCcccccccCcHHHHHHhhcc
Confidence            34566666666666666666664

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.0007  Score=29.32  Aligned_cols=26  Identities=31%  Similarity=0.565  Sum_probs=21.6

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQ   75 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~   75 (107)
                      -.|.|..|+|.|.....|+.|...|.
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            45789999999999998988888775

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0009  Score=25.16  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=22.3

Q ss_pred             eeeCCCCcccccchhhHHHHHhhhC
Q psy11352         51 FATCFVCGKQLSNQYNLRVHMETHQ   75 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~~h~   75 (107)
                      |-+|+.|.+...++..|+.|.++|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4579999999999999999999885

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00086  Score=25.56  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=20.8

Q ss_pred             CeeeCCCCcccccchhhHHHHHhh
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMET   73 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~   73 (107)
                      +||+|+.|...-.+.++|..|++.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHH
Confidence            479999999888899999999874

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.24  E-value=0.0024  Score=23.29  Aligned_cols=22  Identities=23%  Similarity=0.517  Sum_probs=20.1

Q ss_pred             eeCCCCcccccchhhHHHHHhh
Q psy11352         52 ATCFVCGKQLSNQYNLRVHMET   73 (107)
Q Consensus        52 ~~C~~C~~~f~~~~~l~~H~~~   73 (107)
                      |.|+.|-+.|..+.++..|..+
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            7899999999999999999875

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0011  Score=26.65  Aligned_cols=20  Identities=15%  Similarity=0.062  Sum_probs=13.3

Q ss_pred             CCcccChHHHHHHHHccCCCC
Q psy11352         85 SHVSRSRDALRKHVSYRHPHI  105 (107)
Q Consensus        85 ~~~f~~~~~l~~H~~~~H~~e  105 (107)
                      ++.|.....|..|++. |+||
T Consensus        14 ~~pf~a~YkLv~H~R~-HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRR-HTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHH-HHCC
T ss_pred             CCcchhHHHHHHHHhh-cCCC
Confidence            3456677777777774 7765

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.10  E-value=0.0026  Score=25.06  Aligned_cols=20  Identities=25%  Similarity=0.532  Sum_probs=10.1

Q ss_pred             ccCCCCCCcccChHHHHHHH
Q psy11352         79 YACSSCSHVSRSRDALRKHV   98 (107)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~   98 (107)
                      |.|.-||-.|++.+.|..|+
T Consensus         9 f~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           9 FMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CBCTTTCCBCSCHHHHHHHT
T ss_pred             eeccccceeecChhHHHhhh
Confidence            44555555555555555444

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0024  Score=27.60  Aligned_cols=24  Identities=25%  Similarity=0.552  Sum_probs=21.5

Q ss_pred             CcccCCCCCCcccChHHHHHHHHc
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSY  100 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~  100 (107)
                      .-|.|-.|||.|.....|++|..-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQ   28 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQ   28 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHH
T ss_pred             ceeeccccccccCCHHHHhHhHHh
Confidence            468899999999999999999874

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.85  E-value=0.0041  Score=24.79  Aligned_cols=25  Identities=28%  Similarity=0.522  Sum_probs=14.1

Q ss_pred             cccCCCCCCcccChHHHHHHHHccC
Q psy11352         78 FYACSSCSHVSRSRDALRKHVSYRH  102 (107)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~~H  102 (107)
                      .|.|.+|.+.+..-+++-+|.-+.|
T Consensus         8 ~yRC~~C~r~YTHISNFCRHyvtSH   32 (37)
T d2drpa1           8 TYRCKVCSRVYTHISNFCRHYVTSH   32 (37)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             EEEeehhhHHHHHHHHHHHHHHhhc
Confidence            4555666666666666555555444

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.69  E-value=0.004  Score=24.51  Aligned_cols=23  Identities=26%  Similarity=0.482  Sum_probs=20.4

Q ss_pred             CeeeCCCCcccccchhhHHHHHh
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHME   72 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~   72 (107)
                      ..|.|.-||..|.+.+.|..|+.
T Consensus         7 arf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cceeccccceeecChhHHHhhhh
Confidence            45899999999999999999964

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0032  Score=25.23  Aligned_cols=22  Identities=32%  Similarity=0.345  Sum_probs=17.9

Q ss_pred             CCCcccccchhhHHHHHhhhCC
Q psy11352         55 FVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        55 ~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      ..-++.|.....|..|+++|+|
T Consensus        11 ~R~~~pf~a~YkLv~H~R~HTg   32 (33)
T d2glia2          11 SRELRPFKAQYMLVVHMRRHTG   32 (33)
T ss_dssp             TTTTCCCSSHHHHHHHTHHHHC
T ss_pred             CCCCCcchhHHHHHHHHhhcCC
Confidence            3344568899999999999986

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.46  E-value=0.0028  Score=23.50  Aligned_cols=18  Identities=17%  Similarity=0.388  Sum_probs=11.7

Q ss_pred             CCCCcccChHHHHHHHHc
Q psy11352         83 SCSHVSRSRDALRKHVSY  100 (107)
Q Consensus        83 ~C~~~f~~~~~l~~H~~~  100 (107)
                      .|++.|.....|..|+-+
T Consensus         8 ~c~kafkkhnqlkvhqf~   25 (28)
T d2j7ja1           8 NCGKAFKKHNQLKVHQFS   25 (28)
T ss_dssp             TCCCEESSHHHHHHHHHH
T ss_pred             CchHHHhhccceEEEeec
Confidence            466777666666666653

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.32  E-value=0.018  Score=24.70  Aligned_cols=25  Identities=36%  Similarity=0.539  Sum_probs=20.2

Q ss_pred             CCeeeCCCCcccccchhhHHHHHhh
Q psy11352         49 KLFATCFVCGKQLSNQYNLRVHMET   73 (107)
Q Consensus        49 ~~~~~C~~C~~~f~~~~~l~~H~~~   73 (107)
                      ..|-.|+.|+.....+.+|.+|+..
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHH
Confidence            4778888888888888888888764

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.012  Score=22.04  Aligned_cols=17  Identities=35%  Similarity=0.729  Sum_probs=11.8

Q ss_pred             CCCcccChHHHHHHHHc
Q psy11352         84 CSHVSRSRDALRKHVSY  100 (107)
Q Consensus        84 C~~~f~~~~~l~~H~~~  100 (107)
                      |++.|...+.++.|+.+
T Consensus         9 C~K~Frd~saMRKHlht   25 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHT   25 (28)
T ss_dssp             CCCEESSHHHHHHHHGG
T ss_pred             HHHHhhchHHHHHHhhc
Confidence            66777777777777665

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.0032  Score=29.62  Aligned_cols=21  Identities=19%  Similarity=0.434  Sum_probs=11.7

Q ss_pred             ccCCCCCCcccChHHHHHHHH
Q psy11352         79 YACSSCSHVSRSRDALRKHVS   99 (107)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~   99 (107)
                      |.|..|++.|.+...|..|++
T Consensus        16 fYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHTT
T ss_pred             EecccccCccCCHHHHHHHHc
Confidence            455555555555555555544

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.013  Score=22.08  Aligned_cols=18  Identities=28%  Similarity=0.637  Sum_probs=9.3

Q ss_pred             CCCCcccChHHHHHHHHc
Q psy11352         83 SCSHVSRSRDALRKHVSY  100 (107)
Q Consensus        83 ~C~~~f~~~~~l~~H~~~  100 (107)
                      .||+.|+....|.-|.+.
T Consensus         7 gc~kifsnrqylnhh~ky   24 (30)
T d2dlka1           7 GCGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             TTCCEESSHHHHHHHHHH
T ss_pred             CchhhhccHHHHHhHHHH
Confidence            355555555555555443

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.017  Score=26.60  Aligned_cols=36  Identities=14%  Similarity=0.319  Sum_probs=25.0

Q ss_pred             CCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCc
Q psy11352         49 KLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHV   87 (107)
Q Consensus        49 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~   87 (107)
                      +..|.|+.|++.|..-..++   ..--. ..|.|..|+-.
T Consensus        12 ~~~y~Cp~C~~~ys~Lda~~---L~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_          12 RASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             SSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCB
T ss_pred             CCceECCCCCCCcchhhHHH---hcCcCCCeEEecCCCCE
Confidence            36799999999998754433   22222 57999999754

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.54  E-value=0.018  Score=24.69  Aligned_cols=26  Identities=35%  Similarity=0.630  Sum_probs=23.4

Q ss_pred             CcccCCCCCCcccChHHHHHHHHccC
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSYRH  102 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~~H  102 (107)
                      .|-.|++|+-...++.+|.+|+..-|
T Consensus        23 qpatcpic~avirqsrnlrrhlel~h   48 (54)
T d1yuja_          23 QPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            79999999999999999999998644

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.16  E-value=0.02  Score=21.95  Aligned_cols=20  Identities=25%  Similarity=0.710  Sum_probs=9.5

Q ss_pred             CCcccccchhhHHHHHhhhC
Q psy11352         56 VCGKQLSNQYNLRVHMETHQ   75 (107)
Q Consensus        56 ~C~~~f~~~~~l~~H~~~h~   75 (107)
                      .|+..|...-.|..|+-.|+
T Consensus        10 dC~A~ynk~wkL~AHLckHT   29 (31)
T d1tf3a1          10 DCGAAYNKNWKLQAHLSKHT   29 (31)
T ss_dssp             GGCCEESSHHHHHHHHHHHH
T ss_pred             CcchhhccchhhhHHhhhhc
Confidence            34444444444444444444

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=94.13  E-value=0.018  Score=23.50  Aligned_cols=25  Identities=28%  Similarity=0.664  Sum_probs=18.8

Q ss_pred             CCeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCC
Q psy11352         49 KLFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSH   86 (107)
Q Consensus        49 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~   86 (107)
                      .+.|.|.+||....             + .|-.|++|+.
T Consensus         3 ~~~~vC~vCGyi~~-------------g~~Pe~CPvCg~   28 (36)
T d1yuza2           3 DKFHLCPICGYIHK-------------GEDFEKCPICFR   28 (36)
T ss_dssp             CCEEECSSSCCEEE-------------SSCCSBCTTTCC
T ss_pred             CCEEECCCCCCEee-------------CCCCCcCCCCCC
Confidence            36789999997542             3 5788999985

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.82  E-value=0.03  Score=22.98  Aligned_cols=24  Identities=25%  Similarity=0.524  Sum_probs=18.4

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSH   86 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~   86 (107)
                      +.|.|.+||..+.             + .|..|++|+.
T Consensus         4 ~~~~C~vCG~i~~-------------g~~P~~CPvCg~   28 (37)
T d1nnqa2           4 KVYICPICGYTAV-------------DEAPEYCPVCGA   28 (37)
T ss_dssp             CEEECTTTCCEEE-------------SCCCSBCTTTCC
T ss_pred             cEEECCCCCCEec-------------CCCCCcCCCCCC
Confidence            6789999987643             3 5788999985

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.59  E-value=0.054  Score=20.36  Aligned_cols=21  Identities=29%  Similarity=0.667  Sum_probs=10.6

Q ss_pred             ccCCCCCCcccChHHHHHHHH
Q psy11352         79 YACSSCSHVSRSRDALRKHVS   99 (107)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~   99 (107)
                      |.|..||+...+...++-|.-
T Consensus         3 ftc~hcgkqlks~~gmkyhvm   23 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVM   23 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHH
T ss_pred             eechhHHHHHhhccCceEEEe
Confidence            445555555555555554443

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.98  E-value=0.015  Score=27.23  Aligned_cols=24  Identities=21%  Similarity=0.610  Sum_probs=21.1

Q ss_pred             CeeeCCCCcccccchhhHHHHHhh
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMET   73 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~   73 (107)
                      -.|-|..|++.|.+...|..|.++
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CEEecccccCccCCHHHHHHHHcc
Confidence            348999999999999999999863

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.51  E-value=0.075  Score=19.94  Aligned_cols=20  Identities=20%  Similarity=0.431  Sum_probs=11.6

Q ss_pred             CCCCcccChHHHHHHHHccC
Q psy11352         83 SCSHVSRSRDALRKHVSYRH  102 (107)
Q Consensus        83 ~C~~~f~~~~~l~~H~~~~H  102 (107)
                      .|...|..+.++..|....|
T Consensus         9 ~cdl~fttkanmkkhfnrfh   28 (31)
T d1tf3a3           9 GCDLRFTTKANMKKHFNRFH   28 (31)
T ss_dssp             SCCCEESSHHHHHHHHHHHT
T ss_pred             CcceEEeehHHHHHHHhhhc
Confidence            36666666666666654333

>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 292, ZNF292
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.06  E-value=0.15  Score=22.22  Aligned_cols=20  Identities=20%  Similarity=0.187  Sum_probs=9.4

Q ss_pred             CCCcccChHHHHHHHHccCC
Q psy11352         84 CSHVSRSRDALRKHVSYRHP  103 (107)
Q Consensus        84 C~~~f~~~~~l~~H~~~~H~  103 (107)
                      |.-.|.-..+|.-|.+.+|.
T Consensus        28 c~aaftiq~nlilhy~avh~   47 (61)
T d1x3ca1          28 CFAAFTIQQNLILHYQAVHK   47 (61)
T ss_dssp             CCCBCSSHHHHHHHHHHHSS
T ss_pred             hhhhhhhhhhHHHHHHHHhh
Confidence            44444444444444444443

>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF0610-like
domain: Hypothetical protein PF0610
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.09  E-value=0.05  Score=27.63  Aligned_cols=29  Identities=24%  Similarity=0.379  Sum_probs=19.1

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCCcc
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVS   88 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~~f   88 (107)
                      .|-.|..||..|...          ..+|-.|+.|.-.+
T Consensus        66 ~Pp~CrkCGfvFr~~----------~kkPSRCP~CKSE~   94 (105)
T d2gmga1          66 KPAQCRKCGFVFKAE----------INIPSRCPKCKSEW   94 (105)
T ss_dssp             CCCBBTTTCCBCCCC----------SSCCSSCSSSCCCC
T ss_pred             eChhhhhcCCeeccc----------CCCCCCCCCCCCcc
Confidence            456788888888421          12688888886543

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.99  E-value=0.017  Score=26.60  Aligned_cols=26  Identities=23%  Similarity=0.453  Sum_probs=19.2

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQ   75 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~   75 (107)
                      ..|.|..|...|.....|..|+..|.
T Consensus        17 ~~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          17 STYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             ceeeechhHHHHhhHHHHHHHHHhcc
Confidence            45778778777777777777776665

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.21  E-value=0.15  Score=20.33  Aligned_cols=20  Identities=15%  Similarity=0.320  Sum_probs=13.5

Q ss_pred             eCCCCcccccchhhHHHHHh
Q psy11352         53 TCFVCGKQLSNQYNLRVHME   72 (107)
Q Consensus        53 ~C~~C~~~f~~~~~l~~H~~   72 (107)
                      -|..|+-.|.....+..|..
T Consensus        10 YC~~CDI~Fn~~~T~~aHKk   29 (36)
T d1fu9a_          10 YCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             EETTTTEECSSHHHHHHHHH
T ss_pred             HHhhCCceehhHHHHHHHHH
Confidence            46677777777777777654

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.12  E-value=0.41  Score=21.84  Aligned_cols=24  Identities=25%  Similarity=0.570  Sum_probs=20.7

Q ss_pred             CcccCCCCCCcccChHHHHHHHHc
Q psy11352         77 AFYACSSCSHVSRSRDALRKHVSY  100 (107)
Q Consensus        77 k~~~C~~C~~~f~~~~~l~~H~~~  100 (107)
                      ..|+|..|.-.|..-..|..|+..
T Consensus        17 ~~yQC~HCd~K~~s~~el~~hl~~   40 (75)
T d1x6fa1          17 STYQCKHCDSKLQSTAELTSHLNI   40 (75)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHHH
T ss_pred             ceeeechhHHHHhhHHHHHHHHHh
Confidence            479999999999999999888875

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.98  E-value=0.098  Score=20.87  Aligned_cols=25  Identities=20%  Similarity=0.514  Sum_probs=17.3

Q ss_pred             eeeCCCCcccccchhhHHHHHh-hhC
Q psy11352         51 FATCFVCGKQLSNQYNLRVHME-THQ   75 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~-~h~   75 (107)
                      ...|-+|-++|..+.++.+|+. +|.
T Consensus         3 kltclecmrtfkssfsiwrhqvevhn   28 (41)
T d1wjpa3           3 KLTCLECMRTFKSSFSIWRHQVEVHN   28 (41)
T ss_dssp             GGEEGGGTEECSSHHHHHHHHHHTSC
T ss_pred             cccHHHHHHHHHHHHHHHHhhheecc
Confidence            3567778888887777777764 344

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=87.46  E-value=0.18  Score=21.48  Aligned_cols=35  Identities=20%  Similarity=0.355  Sum_probs=17.9

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSH   86 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~   86 (107)
                      +.|.|..||..|.-...=  -.....- ..|.|++|+.
T Consensus         2 ~~y~C~~CgyiYd~~~Gd--gt~Fe~LP~dw~CP~C~a   37 (45)
T d6rxna_           2 QKYVCNVCGYEYDPAEHD--NVPFDQLPDDWCCPVCGV   37 (45)
T ss_dssp             CCEEETTTCCEECGGGGT--TCCGGGSCTTCBCTTTCC
T ss_pred             CCeEeCCCCeEECcccCC--CCCHHHCCCCCCCcCCCC
Confidence            347888888776543210  0000011 3577888874

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.37  E-value=0.45  Score=18.71  Aligned_cols=23  Identities=26%  Similarity=0.418  Sum_probs=16.2

Q ss_pred             CeeeCCCCcccccchhhHHHHHh
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHME   72 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~   72 (107)
                      +.|.|+.|-+-..+...+.+|+.
T Consensus         6 kLyiCEfCLKYmks~~~l~RH~~   28 (33)
T d1m36a_           6 KLYLCEFCLKYMKSRTILQQHMK   28 (33)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHH
T ss_pred             eeeeehhhhhhhCCHHHHHHHHH
Confidence            56777777777777777777764

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.85  E-value=0.14  Score=21.87  Aligned_cols=22  Identities=27%  Similarity=0.597  Sum_probs=18.8

Q ss_pred             eeeCCCCcccccchhhHHHHHh
Q psy11352         51 FATCFVCGKQLSNQYNLRVHME   72 (107)
Q Consensus        51 ~~~C~~C~~~f~~~~~l~~H~~   72 (107)
                      +-+|..|+..|....+++.|+-
T Consensus         6 ~~eC~lC~vKYs~~~SvrdHiF   27 (48)
T d2yrka1           6 KPECTLCGVKYSARLSIRDHIF   27 (48)
T ss_dssp             CSCCTTTTCCCCSSSCHHHHHT
T ss_pred             cccCcccceeeeeecchHhhhh
Confidence            3689999999999999998863

>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcriptional factor SII, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.77  E-value=0.087  Score=23.04  Aligned_cols=13  Identities=31%  Similarity=0.823  Sum_probs=8.7

Q ss_pred             CeeeCCCCccccc
Q psy11352         50 LFATCFVCGKQLS   62 (107)
Q Consensus        50 ~~~~C~~C~~~f~   62 (107)
                      .-+.|..||..+.
T Consensus        36 ~F~~C~~Cg~~Wr   48 (50)
T d1tfia_          36 TFVVCNECGNRWK   48 (50)
T ss_dssp             EEEEESSSCCEEE
T ss_pred             EEEEccccCCeee
Confidence            3467888887653

>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CHY zinc finger-like
superfamily: CHY zinc finger-like
family: CHY zinc finger
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.29  E-value=0.099  Score=24.73  Aligned_cols=11  Identities=27%  Similarity=0.634  Sum_probs=6.8

Q ss_pred             cccCCCCCCcc
Q psy11352         78 FYACSSCSHVS   88 (107)
Q Consensus        78 ~~~C~~C~~~f   88 (107)
                      +-.|+.||-.|
T Consensus        64 ~~~C~~Cgs~F   74 (74)
T d2dkta1          64 QQTCEDCSTLF   74 (74)
T ss_dssp             CSBCSSSCCBS
T ss_pred             CCcCCCCCCCC
Confidence            44577777655

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=84.69  E-value=0.24  Score=27.30  Aligned_cols=37  Identities=24%  Similarity=0.518  Sum_probs=25.5

Q ss_pred             hhHHHHHhhhC--CC------cccCCCCCCcccChHHHHHHHHccCC
Q psy11352         65 YNLRVHMETHQ--NA------FYACSSCSHVSRSRDALRKHVSYRHP  103 (107)
Q Consensus        65 ~~l~~H~~~h~--~k------~~~C~~C~~~f~~~~~l~~H~~~~H~  103 (107)
                      ..|..|+..-.  |+      -|+|..||+ +..-.+|.+|++. |.
T Consensus       125 grlieHiK~~m~~GqDyvFWQFYKCe~CgK-YvDie~~~~H~k~-HG  169 (218)
T d2czra1         125 AALVNHIKNNALAGQDYIFWQFYKCEECGK-YVDIENLEAHLRE-HG  169 (218)
T ss_dssp             HHHHHHHHTTCCBTTTEEEEEEEECTTTCC-EEEGGGHHHHHHT-TT
T ss_pred             HHHHHHHHhccccCcceEEEEEeehhhcCc-eecHHHHHHHHHH-cC
Confidence            34666766432  33      478999997 5667789999996 53

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=84.15  E-value=0.31  Score=19.74  Aligned_cols=31  Identities=3%  Similarity=-0.131  Sum_probs=17.5

Q ss_pred             eeCCCCcccccchhhHHHHHhhhCC-CcccCCCCCCcccC
Q psy11352         52 ATCFVCGKQLSNQYNLRVHMETHQN-AFYACSSCSHVSRS   90 (107)
Q Consensus        52 ~~C~~C~~~f~~~~~l~~H~~~h~~-k~~~C~~C~~~f~~   90 (107)
                      +.|+.||..|....        .-- ..-.|+.||..+.+
T Consensus         3 ~vc~~cG~~Yh~~~--------~pPk~~g~CD~cg~~L~q   34 (37)
T d2ak3a2           3 WIHPGSGRVYNIEF--------NPPKTMGIDDLTGEPLVQ   34 (37)
T ss_dssp             EEETTTTEEEETTT--------BCCSSTTBCTTTCCBCBC
T ss_pred             eeeCCcCChhhhcc--------CCccccCCccCCCCcCEe
Confidence            56777777764322        112 45667777765443

>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Two-iron rubredoxin
species: Pseudomonas oleovorans [TaxId: 301]

Probab=83.84  E-value=0.32  Score=21.67  Aligned_cols=8  Identities=25%  Similarity=0.235  Sum_probs=4.2

Q ss_pred             ccccCCCC
Q psy11352         11 HFLISDHC   18 (107)
Q Consensus        11 ~~~~C~~C   18 (107)
                      +.|+|..|
T Consensus         3 kky~C~~C   10 (56)
T d1s24a_           3 LKWICITC   10 (56)
T ss_dssp             CEEEETTT
T ss_pred             ccEECCCC
Confidence            34555555

>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Clostridium pasteurianum [TaxId: 1501]

Probab=83.31  E-value=0.37  Score=21.18  Aligned_cols=10  Identities=50%  Similarity=0.903  Sum_probs=4.8

Q ss_pred             eeCCCCcccc
Q psy11352         52 ATCFVCGKQL   61 (107)
Q Consensus        52 ~~C~~C~~~f   61 (107)
                      |.|..||..|
T Consensus         4 y~C~~CgyiY   13 (53)
T d1iroa_           4 YTCTVCGYIY   13 (53)
T ss_dssp             EEETTTCCEE
T ss_pred             eEcCCCCcEE
Confidence            4444454444

>d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.30  E-value=0.61  Score=16.69  Aligned_cols=20  Identities=30%  Similarity=0.395  Sum_probs=14.1

Q ss_pred             cCCCCCCcccChHHHHHHHH
Q psy11352         80 ACSSCSHVSRSRDALRKHVS   99 (107)
Q Consensus        80 ~C~~C~~~f~~~~~l~~H~~   99 (107)
                      .|+.|.-.|.+..--..|..
T Consensus         2 vcpycslrf~sp~lk~ehe~   21 (26)
T d1wjpa2           2 VCPYCSLRFFSPELKQEHES   21 (26)
T ss_dssp             CCTTTCCCBSSHHHHHHHHH
T ss_pred             CCCcceeeeCCHHHhhHhhh
Confidence            47888888877766566654

>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Zinc finger FYVE domain containing protein 19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.89  E-value=0.46  Score=23.13  Aligned_cols=15  Identities=27%  Similarity=0.494  Sum_probs=11.2

Q ss_pred             CeeeCCCCcccccch
Q psy11352         50 LFATCFVCGKQLSNQ   64 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~   64 (107)
                      +.+.|..||..|-..
T Consensus        24 rrhhCr~CG~vfC~~   38 (88)
T d1wfka_          24 KEYGCKNCGRAFCNG   38 (88)
T ss_dssp             CEEECSSSCCEEETT
T ss_pred             ccccccccChhhChH
Confidence            567888888877654

>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: RNA polymerase subunits
family: RBP12 subunit of RNA polymerase II
domain: RBP12 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.53  E-value=0.58  Score=19.83  Aligned_cols=29  Identities=28%  Similarity=0.492  Sum_probs=17.4

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCCcc
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSHVS   88 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~~f   88 (107)
                      ..|.|..||..+..+.          +.+..|..||...
T Consensus         3 v~YiCgeCg~~~~l~~----------~d~irCreCG~RI   31 (46)
T d1twfl_           3 LKYICAECSSKLSLSR----------TDAVRCKDCGHRI   31 (46)
T ss_dssp             CCEECSSSCCEECCCT----------TSTTCCSSSCCCC
T ss_pred             eEEEcccCCCceEeCC----------CCcEEeccCCcEE
Confidence            4577777776543321          1577788887543

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.18  E-value=2  Score=22.13  Aligned_cols=32  Identities=13%  Similarity=0.400  Sum_probs=25.7

Q ss_pred             CCCCCCeeeCCCCcccccchhhHHHHHhhhCC
Q psy11352         45 SNHSKLFATCFVCGKQLSNQYNLRVHMETHQN   76 (107)
Q Consensus        45 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   76 (107)
                      +.....+-.|-.|.+.|.+...+..|++...+
T Consensus         9 ~~~e~~~~~CLFCd~~f~s~~~~l~H~k~~H~   40 (121)
T d1wira_           9 PAHGRQHTPCLFCDRLFASAEETFSHCKLEHQ   40 (121)
T ss_dssp             CCCCCCCEECSSSCCEESSHHHHHHHHHHSSC
T ss_pred             CCCCcccceecccCCccCCHHHHHHHHHHhhC
Confidence            33445778899999999999999999986543

>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Archaeon Thermococcus celer [TaxId: 2264]

Probab=81.28  E-value=0.18  Score=22.62  Aligned_cols=13  Identities=31%  Similarity=0.848  Sum_probs=7.5

Q ss_pred             CeeeCCCCccccc
Q psy11352         50 LFATCFVCGKQLS   62 (107)
Q Consensus        50 ~~~~C~~C~~~f~   62 (107)
                      .-|.|..||..|.
T Consensus        42 ~fy~C~~Cg~~wr   54 (57)
T d1qypa_          42 IFYKCTKCGHTWR   54 (57)
T ss_dssp             EEEEESSSCCEEE
T ss_pred             EEEEeCCCCCcce
Confidence            3466666666553

>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=80.89  E-value=0.33  Score=20.50  Aligned_cols=26  Identities=27%  Similarity=0.483  Sum_probs=17.7

Q ss_pred             CeeeCCCCcccccchhhHHHHHhhhCCCcccCCCCCC
Q psy11352         50 LFATCFVCGKQLSNQYNLRVHMETHQNAFYACSSCSH   86 (107)
Q Consensus        50 ~~~~C~~C~~~f~~~~~l~~H~~~h~~k~~~C~~C~~   86 (107)
                      ..+.|..||..+.-.           ..|-.|+.|+.
T Consensus         7 ~~W~C~~CGyi~~g~-----------~aP~~CPvC~~   32 (44)
T d1lkoa2           7 TKWRCRNCGYVHEGT-----------GAPELCPACAH   32 (44)
T ss_dssp             EEEEETTTCCEEEEE-----------ECCSBCTTTCC
T ss_pred             eEEEcCCCCcEEECC-----------CCCCcCCCCCC
Confidence            568888888754321           15778998875