Psyllid ID: psy11481

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-
MKKLKIKEEFSSSEDKPSSCYTNGVSGSNLGSVITTLSPDPAAHPLSHLHHSLPTTTIINTTNHITFTNGLPSSLLHRPLERKEELLLTTTSNGAHFVESVSNVQQPVISTPVTHPAAVMQRHYTLHIEDEMMGSREVVASLSGETRLVAHNNYTSNSHAVALSTSPNNLTQNDMIKKRSGISGIREVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSARWEHIDFNTLIPDNMEVDIPYDNHHHESSLLSYGKERSYMDEDGGLVIVTNGSVGLERSDGGESGSSLGGGGEMISGRGEGEYGRAGSSSGASNLLKCSESTLYSSNSSLSSTMSPLHNQTHIQLPYRPTQSTCPSVIQSSVINTLSASNGVPASAGYNGKPATSPAMVPATPVSTNGMSTATIIKSGDSIPANVTPKLVSLNSLPGLVSAHHSAQVLFTSSQHPKMLSSTSVVTSPPVIKPLPSLQPISSHQIILKPSLAQVNGAPRLVLPHHSAPVTMPAKTATRIVHK
ccccccHHHcccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccEEEcccccccccccccEEEcccccccccccccccccEEEEcccccEEcccccccccccccccccccccccccccc
cccEEEEEEcccccccccccccccccccccccEEEEEccccccccccccccccccEEEcccccccccccccccEEEccccccccEEEEEEcccccccEEEEccEEcccccccccccccEEEccccEEEEEEEEccccccccccccccccccccccccccccHcccccccccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccccccEEEcccccccccccccccccccccccccccccEEEEccccccccccccccccccccccEEEEEEEccccccccccccccccEEcccccccccccccccccccccccccEcccccccccEEEEEEEEccccccHHccccccccccccccccccccccccccccccccHHHHHccccccccccccEEcccccccEEEcccccccccccccccccEEcccccccccccccccccccccccEEEEEcccHHHHcccccEEcccccccccccccccHEEHcc
mkklkikeefsssedkpsscytngvsgsnlgsvittlspdpaahplshlhhslptttiinttnhitftnglpssllhrplerKEELLLTTTSNGAHFVESvsnvqqpvistpvthpaavmQRHYTLHIEDEMMGSREVVASLSGETRLvahnnytsnshavalstspnnltqndmikkrsgisGIREVHNKLEKNRRAHLKECFEILkrqvppaqeekkssnlSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSARwehidfntlipdnmevdipydnhhhessllsygkersymdedgglVIVTNgsvglersdggesgsslggggemisgrgegeygragsssgasnllkcsestlyssnsslsstmsplhnqthiqlpyrptqstcpsviQSSVINTlsasngvpasagyngkpatspamvpatpvstngmstATIIksgdsipanvtpklvslnslpglvsahHSAQVLftssqhpkmlsstsvvtsppvikplpslqpisshqiilkpslaqvngaprlvlphhsapvtmpaktatrivhk
mkklkikeefsssedkpsscytnGVSGSNLGSVITTLSPDPAAHPLSHLHHSLPTTTIINTTNHITFTNGLPSSLLHRPLERKEELLLTTTSNGAHFVESVSNVQQPVISTPVTHPAAVMQRHYTLHIEDEMMGSREVVASLSGETRLVAHNNYTSNSHAVAlstspnnltqndmiKKRSGISGIREVHNKLEKNRRAHLKECFEIlkrqvppaqeekkssnlsilhSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSARWEHIDFNTLIPDNMEVDIPYDNHHHESSLLSYGKERSYMDEDGGLVIVTNgsvglersdggesgsslggggEMISGRGEGEYGRAGSSSGASNLLKCSESTLYSSNSSLSSTMSPLHNQTHIQLPYRPTQSTCPSVIQSSVINTLSASNGVPASAGYNGKPATSPAMVPATPVSTNGMSTATIIKSGDSIPANVTPKLVSLNSLPGLVSAHHSAQVLFTSSQHPKMLSSTSVVTSPPVIKPLPSLQPISSHQIILKPSLAQVNGAPRLvlphhsapvtmpaktatrivhk
MKKLKIKEEFSSSEDKPSSCYTNGVSGSNLGSVITTLSPDpaahplshlhhslptttiinttnhitftnGLPSSllhrplerkeellltttSNGAHFVESVSNVQQPVISTPVTHPAAVMQRHYTLHIEDEMMGSREVVASLSGETRLVAHNNYTSNSHAVALSTSPNNLTQNDMIKKRSGISGIREVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLrrrerefehemerLAREKIHAQQRLALLKKELSARWEHIDFNTLIPDNMEVDIPYDNHHHESSLLSYGKERSYMDEDGGLVIVTNGSVglersdggesgsslggggemisgrgegeYGRAGSSSGASNLLKCsestlyssnsslsstmsPLHNQTHIQLPYRPTQSTCPSVIQSSVINTLSASNGVPASAGYNGKPATSPAMVPATPVSTNGMSTATIIKSGDSIPANVTPKLVSLNSLPGLVSAHHSAQVLFTSSQHPKMLsstsvvtsppvIKPLPSLQPISSHQIILKPSLAQVNGAPRLVLPHHSAPVTMPAKTATRIVHK
***********************************************HLHHSLPTTTIINTTNHITFTNGLPSSLLHRPLERKEELLLTTTSNGAHFVESVSNVQQPVISTPVTHPAAVMQRHYTLHIEDEMM****VVA*******LVA************************************************HLKECFEIL***************LSILHSAIRYIQFLRRREREF******LAREKIHAQQRLALLKKELSARWEHIDFNTLIPDNMEVDIPYDNHHH***LLSYG****YMDEDGGLVIVTN**************************************************************************************************************************************************KLVSLNSLPGLVSA*****V************************************IILKP*LA*V****************************
*********************************ITTLSPDPA**********************************************************************************************************************************************************RAHLKECFEILKRQVP**********LSILHSAIRYIQFLRRREREFEHEMERLAREKIH*******************************************************************************************************************************************************IQSSVINTLS***********************************************VTPKLVSLNSLPGLVSA*************************PPVIKPLPSLQPISSHQIILKPSLAQVNGAPRLVLPHHSAPVTMPAKT*TR*V**
*********************TNGVSGSNLGSVITTLSPDPAAHPLSHLHHSLPTTTIINTTNHITFTNGLPSSLLHRPLERKEELLLTTTSNGAHFVESVSNVQQPVISTPVTHPAAVMQRHYTLHIEDEMMGSREVVASLSGETRLVAHNNYTSNSHAVALSTSPNNLTQNDMIKKRSGISGIREVHNKLEKNRRAHLKECFEILKRQV**********NLSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSARWEHIDFNTLIPDNMEVDIPYDNHHHESSLLSYGKERSYMDEDGGLVIVTNGSVGLE***********GGGGEMISGRGEG***********SNLLKCSE****************LHNQTHIQLPYRPTQSTCPSVIQSSVINTLSASNGVPASAGYNGKPATSPAMVPATPVSTNGMSTATIIKSGDSIPANVTPKLVSLNSLPGLVSAHHSAQVLFTSSQH**********TSPPVIKPLPSLQPISSHQIILKPSLAQVNGAPRLVLPHHSAPVTMPA*********
**KLKIKEEFS******SSCYTNGVSGSNLGSVITTLSPDPAAHPLSHLHHSLPTTTIINTTNHITFTNGLPSSLLHRPLERKEELLLTTTSNGAHFVESVSNVQQPVISTPVTHPAAVMQRHYTLHIEDEMMGS**********T**************************************I*EVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSARWEHIDFNTLIPDNMEVDIP*************************************************GGGEMISGRGEGEYGRAGSSSGASNLLKCSESTLYSSNSSLSSTMSPLHNQTHIQLPYRPTQSTCPSVIQSSVINTLSASNGVP***********************************DSIPANVTPKLVSLNSLPGLVSAH*******TS****K******VVTSPPVIKPLPSLQPISSHQIILKPSLAQVNGAPRLVLPHHSAPVTMP**********
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MKKLKIKEEFSSSEDKPSSCYTNGVSGSNLGSVITTLSPDPAAHPLSHLHHSLPTTTIINTTNHITFTNGLPSSLLHRPLERKEELLLTTTSNGAHFVESVSNVQQPVISTPVTHPAAVMQRHYTLHIEDEMMGSREVVASLSGETRLVAHNNYTSNSHAVALSTSPNNLTQNDMIKKRSGISGIREVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSARWEHIDFNTLIPDNMEVDIPYDNHHHESSLLSYGKERSYMDEDGGLVIVTNGSVGLERSDGGESGSSLGGGGEMISGRGEGEYGRAGSSSGASNLLKCSESTLYSSNSSLSSTMSPLHNQTHIQLPYRPTQSTCPSVIQSSVINTLSASNGVPASAGYNGKPATSPAMVPATPVSTNGMSTATIIKSGDSIPANVTPKLVSLNSLPGLVSAHHSAQVLFTSSQHPKMLSSTSVVTSPPVIKPLPSLQPISSHQIILKPSLAQVNGAPRLVLPHHSAPVTMPAKTATRIVHK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query561 2.2.26 [Sep-21-2011]
Q0VH32574 Max-binding protein MNT O N/A N/A 0.185 0.181 0.628 4e-33
Q99583582 Max-binding protein MNT O yes N/A 0.256 0.247 0.509 5e-33
O08789591 Max-binding protein MNT O yes N/A 0.210 0.199 0.579 5e-33
P50538227 Max dimerization protein no N/A 0.146 0.361 0.414 4e-08
O09015228 Max-interacting protein 1 no N/A 0.142 0.350 0.4 1e-07
Q28DB3200 Max dimerization protein no N/A 0.146 0.41 0.414 1e-07
P52161165 Protein max OS=Danio reri no N/A 0.153 0.521 0.355 1e-07
P50540228 Max-interacting protein 1 no N/A 0.142 0.350 0.4 2e-07
P50539228 Max-interacting protein 1 no N/A 0.142 0.350 0.4 2e-07
Q0VH33200 Max dimerization protein N/A N/A 0.146 0.41 0.402 2e-07
>sp|Q0VH32|MNT_XENLA Max-binding protein MNT OS=Xenopus laevis GN=mnt PE=2 SV=1 Back     alignment and function desciption
 Score =  143 bits (360), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 85/105 (80%), Gaps = 1/105 (0%)

Query: 177 KKRSGISGIREVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFL 236
           ++R G +G REVHNKLEKNRRAHLKECFE LKR +P   ++KK+SNLS+L SA+RYIQ L
Sbjct: 216 RRRPGGAGTREVHNKLEKNRRAHLKECFETLKRNIPNV-DDKKTSNLSVLRSALRYIQSL 274

Query: 237 RRREREFEHEMERLAREKIHAQQRLALLKKELSARWEHIDFNTLI 281
           +R+E+E+EHEMERLAREKI  QQRLA LK +LS   + I+ + ++
Sbjct: 275 KRKEKEYEHEMERLAREKIATQQRLADLKNDLSQWMDIIEIDRIV 319
Binds DNA as a heterodimer with MAX and represses transcription. Binds to the canonical E box sequence 5'-CACGTG-3' and, with higher affinity, to 5'-CACGCG-3'.
Xenopus laevis (taxid: 8355)
>sp|Q99583|MNT_HUMAN Max-binding protein MNT OS=Homo sapiens GN=MNT PE=2 SV=1 Back     alignment and function description
>sp|O08789|MNT_MOUSE Max-binding protein MNT OS=Mus musculus GN=Mnt PE=2 SV=2 Back     alignment and function description
>sp|P50538|MAD1_MOUSE Max dimerization protein 1 OS=Mus musculus GN=Mxd1 PE=1 SV=2 Back     alignment and function description
>sp|O09015|MXI1_RAT Max-interacting protein 1 OS=Rattus norvegicus GN=Mxi1 PE=2 SV=1 Back     alignment and function description
>sp|Q28DB3|MAD3_XENTR Max dimerization protein 3 OS=Xenopus tropicalis GN=mxd3 PE=2 SV=1 Back     alignment and function description
>sp|P52161|MAX_DANRE Protein max OS=Danio rerio GN=max PE=2 SV=1 Back     alignment and function description
>sp|P50540|MXI1_MOUSE Max-interacting protein 1 OS=Mus musculus GN=Mxi1 PE=1 SV=1 Back     alignment and function description
>sp|P50539|MXI1_HUMAN Max-interacting protein 1 OS=Homo sapiens GN=MXI1 PE=1 SV=2 Back     alignment and function description
>sp|Q0VH33|MAD3_XENLA Max dimerization protein 3 OS=Xenopus laevis GN=mxd3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query561
242025122475 Max-binding protein MNT, putative [Pedic 0.206 0.244 0.722 3e-44
427778613 708 hypothetical protein [Rhipicephalus pulc 0.224 0.177 0.565 3e-36
427787601 687 hypothetical protein [Rhipicephalus pulc 0.219 0.179 0.577 4e-36
157113769 1144 max binding protein, mnt [Aedes aegypti] 0.181 0.089 0.669 9e-36
91084185484 PREDICTED: similar to max binding protei 0.187 0.216 0.647 2e-35
427796939622 hypothetical protein, partial [Rhipiceph 0.213 0.192 0.584 3e-35
170059937 796 max binding protein [Culex quinquefascia 0.176 0.124 0.68 6e-35
193676318542 PREDICTED: hypothetical protein LOC10016 0.190 0.197 0.787 2e-34
348518868577 PREDICTED: max-binding protein MNT-like 0.253 0.246 0.535 7e-34
156739267552 max-binding protein MNT [Danio rerio] gi 0.242 0.246 0.546 4e-33
>gi|242025122|ref|XP_002432975.1| Max-binding protein MNT, putative [Pediculus humanus corporis] gi|212518484|gb|EEB20237.1| Max-binding protein MNT, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/119 (72%), Positives = 106/119 (89%), Gaps = 3/119 (2%)

Query: 172 QNDM--IKKRSGISGIREVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSA 229
           Q+D+  +++R G SG REVHNKLEKNRRAHLKECFE++K+Q+P +QE+KK+SNL+ILHSA
Sbjct: 81  QDDIHDLRRRFG-SGTREVHNKLEKNRRAHLKECFELVKKQLPASQEDKKASNLNILHSA 139

Query: 230 IRYIQFLRRREREFEHEMERLAREKIHAQQRLALLKKELSARWEHIDFNTLIPDNMEVD 288
           +R+IQ LRR+ERE+EHEMERLAREKI  QQR A LKKELSA+W+HIDFNTL+PD M VD
Sbjct: 140 LRFIQTLRRKEREYEHEMERLAREKIALQQRFATLKKELSAQWDHIDFNTLVPDVMVVD 198

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|427778613|gb|JAA54758.1| hypothetical protein [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427787601|gb|JAA59252.1| hypothetical protein [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|157113769|ref|XP_001652093.1| max binding protein, mnt [Aedes aegypti] gi|108877611|gb|EAT41836.1| AAEL006567-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|91084185|ref|XP_967000.1| PREDICTED: similar to max binding protein [Tribolium castaneum] gi|270008772|gb|EFA05220.1| hypothetical protein TcasGA2_TC015361 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|427796939|gb|JAA63921.1| hypothetical protein, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|170059937|ref|XP_001865579.1| max binding protein [Culex quinquefasciatus] gi|167878524|gb|EDS41907.1| max binding protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|193676318|ref|XP_001947496.1| PREDICTED: hypothetical protein LOC100166423 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|348518868|ref|XP_003446953.1| PREDICTED: max-binding protein MNT-like [Oreochromis niloticus] Back     alignment and taxonomy information
>gi|156739267|ref|NP_001096581.1| max-binding protein MNT [Danio rerio] gi|152013031|gb|AAI50228.1| Zgc:165490 protein [Danio rerio] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query561
UNIPROTKB|F1NB79561 MNT "Uncharacterized protein" 0.258 0.258 0.467 1.1e-22
ZFIN|ZDB-GENE-070820-8572 mntb "MAX binding protein b" [ 0.226 0.222 0.511 4.2e-22
RGD|1308683590 Mnt "max binding protein" [Rat 0.192 0.183 0.554 7.8e-22
UNIPROTKB|E1BCU5585 MNT "Uncharacterized protein" 0.256 0.246 0.450 8.9e-22
MGI|MGI:109150591 Mnt "max binding protein" [Mus 0.192 0.182 0.554 3e-21
UNIPROTKB|E2QY39778 MNT "Uncharacterized protein" 0.256 0.185 0.450 3.2e-21
UNIPROTKB|Q99583582 MNT "Max-binding protein MNT" 0.256 0.247 0.450 4.1e-21
FB|FBgn0023215790 Mnt "Mnt" [Drosophila melanoga 0.155 0.110 0.467 1.4e-11
UNIPROTKB|C9JBE8181 MXD1 "Max dimerization protein 0.267 0.828 0.284 6.4e-09
UNIPROTKB|F1SLC7221 MXD1 "Uncharacterized protein" 0.279 0.710 0.295 1.7e-08
UNIPROTKB|F1NB79 MNT "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 286 (105.7 bits), Expect = 1.1e-22, P = 1.1e-22
 Identities = 71/152 (46%), Positives = 91/152 (59%)

Query:   162 ALSTSPNNLTQNDMIKKRSGISGIREVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSS 221
             AL  +P    +    KKR G  G REVHNKLEKNRRAHLKECFE LKR +P   ++KK+S
Sbjct:   188 ALKLAPAEDVKPSEQKKRPGGVGTREVHNKLEKNRRAHLKECFETLKRNIPNV-DDKKTS 246

Query:   222 NLSILHSAIRYIQFLXXXXXXXXXXXXXLAREKIHAQQRLALLKKELSARWEHIDFNTLI 281
             NLS+L SA+RYIQ L             LAREKI  QQRLA LK ELS   + ++ + ++
Sbjct:   247 NLSVLRSALRYIQTLKRKEKEYEHEMERLAREKIATQQRLAELKNELSQWMDIMEIDRIV 306

Query:   282 PDNMEVDIPYDNHHHESSLLSYGKERSYMDED 313
                ++   P D+    +S  S G++   MDED
Sbjct:   307 RQTVQ---PEDDQA-STSTASEGEDN--MDED 332
GO:0046983 "protein dimerization activity" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA
GO:0003682 "chromatin binding" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA
GO:0007569 "cell aging" evidence=IEA
GO:0042981 "regulation of apoptotic process" evidence=IEA
GO:0051726 "regulation of cell cycle" evidence=IEA
ZFIN|ZDB-GENE-070820-8 mntb "MAX binding protein b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1308683 Mnt "max binding protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BCU5 MNT "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:109150 Mnt "max binding protein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2QY39 MNT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q99583 MNT "Max-binding protein MNT" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0023215 Mnt "Mnt" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|C9JBE8 MXD1 "Max dimerization protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SLC7 MXD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query561
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 5e-14
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 2e-13
smart0035353 smart00353, HLH, helix loop helix domain 5e-13
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information 
 Score = 66.3 bits (163), Expect = 5e-14
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 186 REVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLR 237
           R+ HN+ E+ RR  + + FE L+  +P     KK S   IL  AI YI+ L+
Sbjct: 2   RKAHNERERRRRDRINDAFEELRELLPTPP-NKKLSKAEILRLAIEYIKHLQ 52

Length = 52
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 561
KOG2483|consensus232 99.79
KOG1318|consensus411 99.7
PF0001055 HLH: Helix-loop-helix DNA-binding domain only nucl 99.45
KOG1319|consensus229 99.39
cd0008360 HLH Helix-loop-helix domain, found in specific DNA 99.37
smart0035353 HLH helix loop helix domain. 99.21
KOG2588|consensus 953 98.78
KOG0561|consensus373 98.08
KOG3561|consensus 803 98.02
KOG4029|consensus228 97.87
KOG4304|consensus250 97.81
KOG3960|consensus284 97.76
KOG3582|consensus856 97.14
PLN0321793 transcription factor ATBS1; Provisional 96.44
KOG3910|consensus632 96.04
KOG4447|consensus173 95.43
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 94.65
PF0234432 Myc-LZ: Myc leucine zipper domain; InterPro: IPR00 94.6
KOG3898|consensus254 94.43
KOG4395|consensus285 93.89
smart0033865 BRLZ basic region leucin zipper. 92.19
KOG4447|consensus173 91.98
PRK10884206 SH3 domain-containing protein; Provisional 91.92
KOG4343|consensus655 91.02
PF0017064 bZIP_1: bZIP transcription factor cAMP response el 90.44
PRK1542279 septal ring assembly protein ZapB; Provisional 89.21
COG307479 Uncharacterized protein conserved in bacteria [Fun 88.53
KOG3119|consensus269 88.37
PF01920106 Prefoldin_2: Prefoldin subunit; InterPro: IPR00277 87.87
PF0771654 bZIP_2: Basic region leucine zipper; InterPro: IPR 86.72
KOG4005|consensus292 85.54
PF0516489 ZapA: Cell division protein ZapA; InterPro: IPR007 84.98
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 84.85
PF1477560 NYD-SP28_assoc: Sperm tail C-terminal domain 83.53
smart00502127 BBC B-Box C-terminal domain. Coiled coil region C- 83.2
PRK13922276 rod shape-determining protein MreC; Provisional 83.06
COG2433652 Uncharacterized conserved protein [Function unknow 83.0
KOG4571|consensus294 82.62
PF11690109 DUF3287: Protein of unknown function (DUF3287); In 82.21
PF10205102 KLRAQ: Predicted coiled-coil domain-containing pro 81.87
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 81.47
PRK10722247 hypothetical protein; Provisional 81.24
PF15458254 NTR2: Nineteen complex-related protein 2 80.55
PF0497780 DivIC: Septum formation initiator; InterPro: IPR00 80.23
PRK00888105 ftsB cell division protein FtsB; Reviewed 80.02
>KOG2483|consensus Back     alignment and domain information 
Probab=99.79  E-value=1.2e-18  Score=169.18  Aligned_cols=103  Identities=40%  Similarity=0.524  Sum_probs=91.6

Q ss_pred             CCCCCCchhhhhHHHHhHHHHHHHHHHHHhccCCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481        179 RSGISGIREVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQ  258 (561)
Q Consensus       179 RPg~SeRRaTHNaLERKRRd~LKdcFeeLRdlVPsLsDn~KaSKAsILrKAiDYIQkLQreEreLE~EkERLRREneaLQ  258 (561)
                      +...++.|+.||+|||+||++||+||+.||+.||.+.++++...+.||+||.+||++|++++.++++++|+|++|++.|+
T Consensus        53 ~~~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~  132 (232)
T KOG2483|consen   53 TSSAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLSRENRKLK  132 (232)
T ss_pred             CCCCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            33567899999999999999999999999999999877666668999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcccccccCCCCCccccccccC
Q psy11481        259 QRLALLKKELSARWEHIDFNTLIPDNMEVDIPYDN  293 (561)
Q Consensus       259 QRLeELKqELsQqw~hIDfStLlPd~lEIDRvlRQ  293 (561)
                      +||++|+....            |...++.++.+|
T Consensus       133 ~rl~ql~~~~s------------~a~~~~~~~~s~  155 (232)
T KOG2483|consen  133 ARLEQLSLPQS------------PASSEAIRLDSQ  155 (232)
T ss_pred             HHHHHhcCccc------------cchhhhhhcccc
Confidence            99999986543            366677777766

>KOG1318|consensus Back     alignment and domain information
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt) Back     alignment and domain information
>KOG1319|consensus Back     alignment and domain information
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>smart00353 HLH helix loop helix domain Back     alignment and domain information
>KOG2588|consensus Back     alignment and domain information
>KOG0561|consensus Back     alignment and domain information
>KOG3561|consensus Back     alignment and domain information
>KOG4029|consensus Back     alignment and domain information
>KOG4304|consensus Back     alignment and domain information
>KOG3960|consensus Back     alignment and domain information
>KOG3582|consensus Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>KOG3910|consensus Back     alignment and domain information
>KOG4447|consensus Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes Back     alignment and domain information
>KOG3898|consensus Back     alignment and domain information
>KOG4395|consensus Back     alignment and domain information
>smart00338 BRLZ basic region leucin zipper Back     alignment and domain information
>KOG4447|consensus Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>KOG4343|consensus Back     alignment and domain information
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization Back     alignment and domain information
>PRK15422 septal ring assembly protein ZapB; Provisional Back     alignment and domain information
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG3119|consensus Back     alignment and domain information
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea Back     alignment and domain information
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization Back     alignment and domain information
>KOG4005|consensus Back     alignment and domain information
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain Back     alignment and domain information
>smart00502 BBC B-Box C-terminal domain Back     alignment and domain information
>PRK13922 rod shape-determining protein MreC; Provisional Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4571|consensus Back     alignment and domain information
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function Back     alignment and domain information
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PRK10722 hypothetical protein; Provisional Back     alignment and domain information
>PF15458 NTR2: Nineteen complex-related protein 2 Back     alignment and domain information
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation [] Back     alignment and domain information
>PRK00888 ftsB cell division protein FtsB; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query561
1an2_A86 Recognition By Max Of Its Cognate Dna Through A Dim 5e-05
1r05_A87 Solution Structure Of Max B-Hlh-Lz Length = 87 8e-05
1nkp_B83 Crystal Structure Of Myc-Max Recognizing Dna Length 1e-04
1nlw_B76 Crystal Structure Of Mad-Max Recognizing Dna Length 4e-04
1hlo_A80 The Crystal Structure Of An Intact Human Max-Dna Co 5e-04
1nlw_A80 Crystal Structure Of Mad-Max Recognizing Dna Length 7e-04
>pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna Through A Dimeric BHLHZ DOMAIN Length = 86 Back     alignment and structure 
Iteration: 1

 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 186 REVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLXXXXXXXXX 245
           R  HN LE+ RR H+K+ F  L+  VP  Q E K+S   IL  A  YIQ++         
Sbjct: 4   RAHHNALERKRRDHIKDSFHSLRDSVPSLQGE-KASRAQILDKATEYIQYMRRKNHTHQQ 62
Query: 246 XXXXLAREKIHAQQRLALLKKELS 269
               L R+    +Q++  L+K  S
Sbjct: 63  DIDDLKRQNALLEQQVRALEKARS 86
>pdb|1R05|A Chain A, Solution Structure Of Max B-Hlh-Lz Length = 87 Back     alignment and structure
>pdb|1NKP|B Chain B, Crystal Structure Of Myc-Max Recognizing Dna Length = 83 Back     alignment and structure
>pdb|1NLW|B Chain B, Crystal Structure Of Mad-Max Recognizing Dna Length = 76 Back     alignment and structure
>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna Complex: New Insights Into Mechanisms Of Transcriptional Control Length = 80 Back     alignment and structure
>pdb|1NLW|A Chain A, Crystal Structure Of Mad-Max Recognizing Dna Length = 80 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query561
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 99.88
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 99.85
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 99.79
1hlo_A80 Protein (transcription factor MAX); transcriptiona 99.67
4ati_A118 MITF, microphthalmia-associated transcription fact 99.64
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 99.63
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 99.57
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 99.48
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 99.35
1a0a_A63 BHLH, protein (phosphate system positive regulator 99.34
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 99.34
4h10_B71 Circadian locomoter output cycles protein kaput; B 99.33
4h10_A73 ARYL hydrocarbon receptor nuclear translocator-LI 99.16
4ath_A83 MITF, microphthalmia-associated transcription fact 99.04
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 98.9
4f3l_A361 Mclock, circadian locomoter output cycles protein 98.67
4f3l_B387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 98.47
4aya_A97 DNA-binding protein inhibitor ID-2; cell cycle; 2. 98.36
2yy0_A53 C-MYC-binding protein; conserved hypothetical prot 94.63
1a93_A34 Coiled coil, LZ, MYC proto-oncogene protein; leuci 94.05
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 93.06
1gd2_E70 Transcription factor PAP1; basic leucine zipper, p 92.96
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 92.0
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 91.73
1jnm_A62 Proto-oncogene C-JUN; BZIP, protein-DNA complex, t 91.14
1ci6_A63 Transcription factor ATF-4; BZIP; 2.60A {Homo sapi 87.58
1hjb_A87 Ccaat/enhancer binding protein beta; transcription 87.29
1a93_B34 MAX protein, coiled coil, LZ; leucine zipper, 2D s 86.92
1gu4_A78 CAAT/enhancer binding protein beta; transcription/ 85.02
1ci6_A63 Transcription factor ATF-4; BZIP; 2.60A {Homo sapi 83.34
2wt7_B90 Transcription factor MAFB; transcription, transcri 83.15
3w03_C184 DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS 82.08
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
Probab=99.88  E-value=1.2e-22  Score=167.34  Aligned_cols=80  Identities=38%  Similarity=0.559  Sum_probs=76.8

Q ss_pred             chhhhhHHHHhHHHHHHHHHHHHhccCCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481        185 IREVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLALL  264 (561)
Q Consensus       185 RRaTHNaLERKRRd~LKdcFeeLRdlVPsLsDn~KaSKAsILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeEL  264 (561)
                      +|.+||.+||+||++||+||+.|+++||.+.++.|+||+.||++|++||+.|+++++++++|+++|++|+++|+++|++|
T Consensus         1 ~R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l   80 (80)
T 1nlw_A            1 SRSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL   80 (80)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            48999999999999999999999999999989999999999999999999999999999999999999999999999865
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A Back     alignment and structure
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Back     alignment and structure
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus} Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens} Back     alignment and structure
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} Back     alignment and structure
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Back     alignment and structure
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Back     alignment and structure
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B Back     alignment and structure
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Back     alignment and structure
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Back     alignment and structure
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 561
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 1e-20
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 3e-19
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 2e-18
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 9e-14
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 3e-13
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 2e-12
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 3e-11
d1uklc_61 a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId 2e-09
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.2 bits (208), Expect = 1e-20
 Identities = 29/76 (38%), Positives = 48/76 (63%)

Query: 186 REVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRREREFEH 245
           R  HN++EKNRRAHL+   E LK  VP   +  + + LS+L  A  +I+ L   +R+  H
Sbjct: 2   RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH 61

Query: 246 EMERLAREKIHAQQRL 261
           ++++L RE+ H +++L
Sbjct: 62  QIDQLQREQRHLKRQL 77
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query561
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 99.81
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 99.8
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 99.76
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 99.65
d1an4a_65 Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960 99.45
d1mdya_68 Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10 99.43
d1a0aa_63 Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce 99.43
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 99.22
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.9e-20  Score=147.37  Aligned_cols=79  Identities=37%  Similarity=0.549  Sum_probs=75.2

Q ss_pred             chhhhhHHHHhHHHHHHHHHHHHhccCCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11481        185 IREVHNKLEKNRRAHLKECFEILKRQVPPAQEEKKSSNLSILHSAIRYIQFLRRREREFEHEMERLAREKIHAQQRLAL  263 (561)
Q Consensus       185 RRaTHNaLERKRRd~LKdcFeeLRdlVPsLsDn~KaSKAsILrKAiDYIQkLQreEreLE~EkERLRREneaLQQRLeE  263 (561)
                      .|..||.+||+||+.||+||+.|+++||.+.+..|.||+.||.+|++||+.|+++.+++..++++|++++++|+++|++
T Consensus         1 ~R~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~l~~   79 (79)
T d1nlwa_           1 SRSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK   79 (79)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4899999999999999999999999999988889999999999999999999999999999999999999999998863
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure