Psyllid ID: psy11694

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-----
Protein Sequence
MSQPPWVSLGEKGLGYLHTFMIKVALLESNIFQTRGYLNSPVTRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSGTAVFEVNKFFDLSDSDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLYGTSIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVML
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccHHHHHHHHcccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccEEEccEEEcccccHHHHHHHHHccccEEEEEEccccccccccccccccEEEcccccEEEEEccccccccccccEEEEcccccccEEEcccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccEEEccEEEcccccHHHHHHHHHccccEEEEEEcccccccccccccccccccccccccEEEEEEEcccccccccccccEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHccccccccccccccccccccccccccccccccEccccccccccccEEcccccccccccEccccEcHHHHHHHHHHHHHHHHHHcccccEcHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHccccccccccccccccccccccccccccccccEccccccccccccEEcccccccccccEccccEcHHHHHHHHHHHHHHHHHHcccccEcHHHHHHHcccccccEcccHHHHHHHHHHHccEcEcccccccccccccccccccccccEEEEcccEEcccccHHHHHHHHHccccEEEEEEccccEEEcccEEEccEEEEEccEEEEEEEccEcccccEcccEEEccccccccEEEEEEccccccccEcHHHHHHHcccccHHHcccHHHHHHHHHHcccEEEcccccccccccccccccccccccEEEEcccEEcccccHHHHHHHHHccccEEEEEEccccEEEcccEEcccccccccccccEEEEEEEEEEEccEEcccEEEEEEEccEcccccEcccc
Coil and Loop (DISEMBL)
msqppwvslgekglgYLHTFMIKVALLESNifqtrgylnspvTRFLNFMRDHDKVYSSVEDLLRRHENFVTNVekaedyqredsgtavfevnkffdlsdsdlqqltglnldstlediqpslqapfssnqtdTEMRAFQFnslrhgddlpeafDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAiqgnnltelsvqHHDKVYSSVEDLLRRHENFVTNVekaedyqsedsgtavfgvnkffdlsesdlqqltglnldstlediqpslqapfssnqtdTEMRAFQFnslrhgddlpeafDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAiqgnslteLSVQQLVdcdmsnggcnggrmDDALQYIIDnggvvsdqaypykasesergclvgeeegfkvkvkeysripygeeeeMKKWVatrgplsvgmnanglfyysggvidlnqrlygtsiPYWIVknswgsdwgekvedkvgssgnrtrdleltgvlpsklsRLATEKLvdcdmsnggcnggrmDDALQYIIDnggvvsdqaypykasesergclvgeeegfkvkvkeysripygeeeeMKKWVatrgplsvgmnanglfyysggvidlnqrlcnpkaqnHALIIVGYgeeekkdgtsipYWIVKnswgsdwgekvml
Flexible Loop (DISEMBL)
MSQPPWVSLGEKGLGYLHTFMIKVALLESNIFQTRGYLNSPVTRFLNFMRDHDKVYSSVEDLLRRHENFvtnvekaedyqredsgTAVFEVNKFFDLSDSDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHHDKVYSSVEDLLRRHENFVTNVEkaedyqsedsgTAVFGVNKFFDLSESDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKasesergclvgeeegfkvkvkeysripygeeeemkKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLYGTSIPYWIVKnswgsdwgekvedkvgssgnrtrdleltgvlpsklsrLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKasesergclvgeeegfkvkvkeysripygeeeemkKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYgeeekkdgtsipywivknswgsdwgekvml
Low Complexity Region (SEG)
MSQPPWVSLGEKGLGYLHTFMIKVALLESNIFQTRGYLNSPVTRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSGTAVFEVNKFFDLSDSDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLvgeeegfkvkvkeYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLYGTSIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLvgeeegfkvkvkeYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVML
Disordered region (IsUnstruct)
*****WVSLGEKGLGYLHTFMIKVALLESNIFQTRGYLNSPVTRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDY****SGTAVFEVNKFFDLSDSDLQQLTGL******************************FNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHHDKVYSSVEDLLRRHENFVTNVE**********GTAVFGVNKFFDLSESDLQQLTGL******************************FNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLYGTSIPYWIVKNSWGSDWGEKV***************LTGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDW******
Disordered Region (DISOPRED)
*********GEKGLGYLHTFMIKVALLESNIFQTRGYLNSPVTRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSGTAVFEVNKFFDLSDSDLQQLTGLNLDST*************************FNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLTGLNLDST*************************FNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLYGTSIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVML
Disordered Region (DISEMBL)
MSQPPWVSLGEKGLGYLHTFMIKVALLESNIFQTRGYLNSPVTRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSGTAVFEVNKFFDLSDSDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLYGTSIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVML
Disordered Region (DISPRO)
**QPPWVSLGEKGLGYLHTFMIKVALLESNIFQTRGYLNSPVTRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSGTAVFEVNKFFDLSDSDLQQLTGLNL***************************QFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLTGLNL***************************QFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLYGTSIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVML
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQPPWVSLGEKGLGYLHTFMIKVALLESNIFQTRGYLNSPVTRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSGTAVFEVNKFFDLSDSDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLYGTSIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVML
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	655	2.2.26 [Sep-21-2011]
Q9VN93	614	Putative cysteine protein	yes	N/A	0.381	0.407	0.328	1e-41
Q80LP4	337	Viral cathepsin OS=Adoxop	N/A	N/A	0.410	0.798	0.319	3e-39
Q9LM66	356	Xylem cysteine proteinase	no	N/A	0.4	0.735	0.359	6e-39
O65493	355	Xylem cysteine proteinase	no	N/A	0.432	0.797	0.351	3e-38
P04988	343	Cysteine proteinase 1 OS=	yes	N/A	0.386	0.737	0.332	1e-37
Q9FGR9	361	KDEL-tailed cysteine endo	no	N/A	0.390	0.709	0.353	1e-37
P41715	324	Viral cathepsin OS=Choris	N/A	N/A	0.424	0.858	0.324	3e-37
P41721	323	Viral cathepsin OS=Bombyx	N/A	N/A	0.444	0.900	0.322	1e-36
Q6VTL7	324	Viral cathepsin OS=Choris	N/A	N/A	0.403	0.814	0.336	5e-36
Q91GE3	323	Viral cathepsin OS=Epiphy	N/A	N/A	0.438	0.888	0.330	6e-36

>sp|Q9VN93|CPR1_DROME Putative cysteine proteinase CG12163 OS=Drosophila melanogaster GN=CG12163 PE=2 SV=2

 Score =  171 bits (434), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 151/292 (51%), Gaps = 42/292 (14%)

Query: 204 YSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLTGLNLDSTLE 263
           Y S  +   R   F  N++  E+  + + G+A +G+ +F D++ S+ ++ TGL       
Sbjct: 319 YVSTAERQMRLRIFRQNLKTIEELNANEMGSAKYGITEFADMTSSEYKERTGL------- 371

Query: 264 DIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAF 323
                    +  ++      +       HG+ LP+ FDWR +  +++VK QG C  CWAF
Sbjct: 372 ---------WQRDEAKATGGSAAVVPAYHGE-LPKEFDWRQKDAVTQVKNQGSCGSCWAF 421

Query: 324 SAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYP 383
           S  G +E ++A++   L E S Q+L+DCD ++  CNGG MD+A + I D GG+  +  YP
Sbjct: 422 SVTGNIEGLYAVKTGELKEFSEQELLDCDTTDSACNGGLMDNAYKAIKDIGGLEYEAEYP 481

Query: 384 YKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSG 443
           YKA +++  C         V+V  +  +P G E  M++W+   GP+S+G+NAN + +Y G
Sbjct: 482 YKAKKNQ--CHFNRTLSH-VQVAGFVDLPKGNETAMQEWLLANGPISIGINANAMQFYRG 538

Query: 444 GVIDLNQRL--------------YGTS--------IPYWIVKNSWGSDWGEK 473
           GV    + L              YG S        +PYWIVKNSWG  WGE+
Sbjct: 539 GVSHPWKALCSKKNLDHGVLVVGYGVSDYPNFHKTLPYWIVKNSWGPRWGEQ 590

May have a role in autophagic cell death.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -

>sp|Q80LP4|CATV_NPVAH Viral cathepsin OS=Adoxophyes honmai nucleopolyhedrovirus GN=VCATH PE=3 SV=1

 Score =  164 bits (414), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 100/313 (31%), Positives = 167/313 (53%), Gaps = 44/313 (14%)

Query: 194 ELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDL-QQ 252
           E  + +++K Y   +    R + F  N+E   + +++ + +A++ +NKF DLS+++L  +
Sbjct: 33  ETFIINYNKQYPDTKTKNYRFKIFKQNLEDINE-KNKLNDSAIYNINKFSDLSKNELLTK 91

Query: 253 LTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRH-------GDDLPEAFDWRAE 305
            TGL         +PS     +SN          F ++ H        D+LP+ FDWR  
Sbjct: 92  YTGLT------SKKPSNMVRSTSN----------FCNVIHLDAPPDVHDELPQNFDWRVN 135

Query: 306 GVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDD 365
             ++ VK+QG C  CWA +AVG +E ++AI+ N L  LS QQL+DCD +N  C+GG M  
Sbjct: 136 NKMTSVKDQGACGSCWAHAAVGTLETLYAIKHNYLINLSEQQLIDCDSANMACDGGLMHT 195

Query: 366 ALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVAT 425
           A + +++ GG++ +  YPY+ +   +G    + + F + V    R  +  EE +KK + T
Sbjct: 196 AFEQLMNAGGLMEEIDYPYQGT---KGVCKIDNKKFALSVSSCKRYIFQNEENLKKELIT 252

Query: 426 RGPLSVGMNANGLFYYSGGVIDLNQRL----------YGTS--IPYWIVKNSWGSDWGE- 472
            GP+++ ++A  +  YS G+I   + L          YGT   + YW +KNSWGSDWGE 
Sbjct: 253 MGPIAMAIDAASISTYSKGIIHFCENLGLNHAVLLVGYGTEGGVSYWTLKNSWGSDWGED 312

Query: 473 ---KVEDKVGSSG 482
              +V+  + + G
Sbjct: 313 GYFRVKRNINACG 325

Cysteine protease that plays an essential role in host liquefaction to facilitate horizontal transmission of the virus. May participate in the degradation of foreign protein expressed by the baculovirus system.

Adoxophyes honmai (taxid: 85585)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 5

EC: 0

>sp|Q9LM66|XCP2_ARATH Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2

 Score =  162 bits (411), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 107/298 (35%), Positives = 163/298 (54%), Gaps = 36/298 (12%)

Query: 192 LTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQ 251
           L E  + + +K Y +VE+   R E F  N+ K  D  ++   +   G+N+F DLS  + +
Sbjct: 50  LFENWISNFEKAYETVEEKFLRFEVFKDNL-KHIDETNKKGKSYWLGLNEFADLSHEEFK 108

Query: 252 QL-TGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISK 310
           ++  GL  D    D                E R++   + R  + +P++ DWR +G +++
Sbjct: 109 KMYLGLKTDIVRRD----------------EERSYAEFAYRDVEAVPKSVDWRKKGAVAE 152

Query: 311 VKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS-NGGCNGGRMDDALQY 369
           VK QG C  CWAFS V  VE ++ I   +LT LS Q+L+DCD + N GCNGG MD A +Y
Sbjct: 153 VKNQGSCGSCWAFSTVAAVEGINKIVTGNLTTLSEQELIDCDTTYNNGCNGGLMDYAFEY 212

Query: 370 IIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPL 429
           I+ NGG+  ++ YPY  S  E  C + ++E   V +  +  +P  +E+ + K +A + PL
Sbjct: 213 IVKNGGLRKEEDYPY--SMEEGTCEMQKDESETVTINGHQDVPTNDEKSLLKALAHQ-PL 269

Query: 430 SVGMNANG--LFYYSGGV------IDLNQRL----YGTS--IPYWIVKNSWGSDWGEK 473
           SV ++A+G    +YSGGV      +DL+  +    YG+S    Y IVKNSWG  WGEK
Sbjct: 270 SVAIDASGREFQFYSGGVFDGRCGVDLDHGVAAVGYGSSKGSDYIIVKNSWGPKWGEK 327

Probable thiol protease.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|O65493|XCP1_ARATH Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1

 Score =  160 bits (405), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 114/324 (35%), Positives = 165/324 (50%), Gaps = 41/324 (12%)

Query: 169 CACCWAFSAVGVVEAMHAIQGNNLTELS---VQHHDKVYSSVEDLLRRHENFVTNVEKAE 225
           CA    FS VG     H    + L EL    +  H K Y SVE+ + R E F  N+    
Sbjct: 25  CAFARDFSIVGYTPE-HLTNTDKLLELFESWMSEHSKAYKSVEEKVHRFEVFRENLMHI- 82

Query: 226 DYQSEDSGTAVFGVNKFFDLSESDLQ-QLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRA 284
           D ++ +  +   G+N+F DL+  + + +  GL         QPS                
Sbjct: 83  DQRNNEINSYWLGLNEFADLTHEEFKGRYLGLAKPQFSRKRQPSAN-------------- 128

Query: 285 FQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELS 344
           F++  +    DLP++ DWR +G ++ VK+QG+C  CWAFS V  VE ++ I   +L+ LS
Sbjct: 129 FRYRDIT---DLPKSVDWRKKGAVAPVKDQGQCGSCWAFSTVAAVEGINQITTGNLSSLS 185

Query: 345 VQQLVDCDMS-NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKV 403
            Q+L+DCD + N GCNGG MD A QYII  GG+  +  YPY   E    C   +E+  +V
Sbjct: 186 EQELIDCDTTFNSGCNGGLMDYAFQYIISTGGLHKEDDYPYLMEEGI--CQEQKEDVERV 243

Query: 404 KVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVI------DLNQRL--- 452
            +  Y  +P  ++E + K +A + P+SV + A+G    +Y GGV       DL+  +   
Sbjct: 244 TISGYEDVPENDDESLVKALAHQ-PVSVAIEASGRDFQFYKGGVFNGKCGTDLDHGVAAV 302

Query: 453 -YGTS--IPYWIVKNSWGSDWGEK 473
            YG+S    Y IVKNSWG  WGEK
Sbjct: 303 GYGSSKGSDYVIVKNSWGPRWGEK 326

Probable thiol protease.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|P04988|CYSP1_DICDI Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2

 Score =  158 bits (400), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 142/304 (46%), Gaps = 51/304 (16%)

Query: 201 DKVYSSVEDLLRRHENFVTNVEKAEDYQ---SEDSGTAVFGVNKFFDLSESDLQQLTGLN 257
           +K YS  E+ L R E F +N+ K E+             FGVNKF DLS  + +     N
Sbjct: 37  NKKYSH-EEYLERFEIFKSNLGKIEELNLIAINHKADTKFGVNKFADLSSDEFKNYYLNN 95

Query: 258 LDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKC 317
            ++   D  P       ++  D E            + +P AFDWR  G ++ VK QG+C
Sbjct: 96  KEAIFTDDLPV------ADYLDDEFI----------NSIPTAFDWRTRGAVTPVKNQGQC 139

Query: 318 ACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCD----------MSNGGCNGGRMDDAL 367
             CW+FS  G VE  H I  N L  LS Q LVDCD            + GCNGG   +A 
Sbjct: 140 GSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEQACDEGCNGGLQPNAY 199

Query: 368 QYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRG 427
            YII NGG+ ++ +YPY A    +        G   K+  ++ IP   E  M  ++ + G
Sbjct: 200 NYIIKNGGIQTESSYPYTAETGTQCNFNSANIG--AKISNFTMIP-KNETVMAGYIVSTG 256

Query: 428 PLSVGMNANGLFYYSGGVIDL------------------NQRLYGTSIPYWIVKNSWGSD 469
           PL++  +A    +Y GGV D+                     ++  ++PYWIVKNSWG+D
Sbjct: 257 PLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGAD 316

Query: 470 WGEK 473
           WGE+
Sbjct: 317 WGEQ 320

Cysteine proteinases 1 and 2 are believed to participate in the breakdown of protein during differentiation of Dictyostelium as a response to starvation.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q9FGR9|CEP1_ARATH KDEL-tailed cysteine endopeptidase CEP1 OS=Arabidopsis thaliana GN=CEP1 PE=2 SV=1

 Score =  158 bits (400), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/291 (35%), Positives = 155/291 (53%), Gaps = 35/291 (12%)

Query: 200 HDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQL-TGLNL 258
           H  V  S+E+  +R   F  NV+   +   +D    +  +NKF D++  + ++   G N+
Sbjct: 44  HHTVARSLEEKAKRFNVFKHNVKHIHETNKKDKSYKL-KLNKFGDMTSEEFRRTYAGSNI 102

Query: 259 DSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCA 318
                         F   +  T  ++F + ++   + LP + DWR  G ++ VK QG+C 
Sbjct: 103 KH---------HRMFQGEKKAT--KSFMYANV---NTLPTSVDWRKNGAVTPVKNQGQCG 148

Query: 319 CCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS-NGGCNGGRMDDALQYIIDNGGVV 377
            CWAFS V  VE ++ I+   LT LS Q+LVDCD + N GCNGG MD A ++I + GG+ 
Sbjct: 149 SCWAFSTVVAVEGINQIRTKKLTSLSEQELVDCDTNQNQGCNGGLMDLAFEFIKEKGGLT 208

Query: 378 SDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG 437
           S+  YPYKAS+    C   +E    V +  +  +P   E+++ K VA + P+SV ++A G
Sbjct: 209 SELVYPYKASDET--CDTNKENAPVVSIDGHEDVPKNSEDDLMKAVANQ-PVSVAIDAGG 265

Query: 438 --LFYYSGGVI------DLNQRL----YGTSI---PYWIVKNSWGSDWGEK 473
               +YS GV       +LN  +    YGT+I    YWIVKNSWG +WGEK
Sbjct: 266 SDFQFYSEGVFTGRCGTELNHGVAVVGYGTTIDGTKYWIVKNSWGEEWGEK 316

Involved in the final stage of developmental programmed cell death and in intercalation of new cells. Cleaves extensins, thus probably supporing the final cell collapse.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|P41715|CATV_NPVCF Viral cathepsin OS=Choristoneura fumiferana nuclear polyhedrosis virus GN=Vcath PE=3 SV=1

 Score =  157 bits (397), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/317 (32%), Positives = 162/317 (51%), Gaps = 39/317 (12%)

Query: 183 AMHAIQGNNLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKF 242
           A   ++  N  E  +   +K YSS  + LRR + F  N+E+  +    DS TA + +NKF
Sbjct: 18  AYDVLKAPNYFEDFLHKFNKSYSSESEKLRRFQIFRHNLEEIINKNHNDS-TAQYEINKF 76

Query: 243 FDLSESD-LQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFD 301
            DLS+ + + + TGL+L             P  + Q   E+        R  D  P  FD
Sbjct: 77  ADLSKDETISKYTGLSL-------------PLQT-QNFCEVVVLD----RPPDKGPLEFD 118

Query: 302 WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGG 361
           WR    ++ VK QG C  CWAF+ +G +E+  AI+ N    LS QQL+DCD  + GC+GG
Sbjct: 119 WRRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHNQFINLSEQQLIDCDFVDAGCDGG 178

Query: 362 RMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKK 421
            +  A + +++ GG+ ++  YPY   E+  G        F VKVK+  R     EE++K 
Sbjct: 179 LLHTAFEAVMNMGGIQAESDYPY---EANNGDCRANAAKFVVKVKKCYRYITVFEEKLKD 235

Query: 422 WVATRGPLSVGMNANGLFYYSGGVID------LNQR--LYGTS----IPYWIVKNSWGSD 469
            + + GP+ V ++A+ +  Y  G++       LN    L G +    +P+WI+KN+WG+D
Sbjct: 236 LLRSVGPIPVAIDASDIVNYKRGIMKYCANHGLNHAVLLVGYAVENGVPFWILKNTWGAD 295

Query: 470 WGE----KVEDKVGSSG 482
           WGE    +V+  + + G
Sbjct: 296 WGEQGYFRVQQNINACG 312

Cysteine protease that plays an essential role in host liquefaction to facilitate horizontal transmission of the virus. May participate in the degradation of foreign protein expressed by the baculovirus system.

Choristoneura fumiferana (taxid: 7141)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 5

EC: 0

>sp|P41721|CATV_NPVBM Viral cathepsin OS=Bombyx mori nuclear polyhedrosis virus GN=VCATH PE=1 SV=1

 Score =  155 bits (392), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/338 (32%), Positives = 166/338 (49%), Gaps = 47/338 (13%)

Query: 177 AVGVVEAMHAIQGNNLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAV 236
           AV    A   ++  N  E  V   +K YSS  + LRR + F  N+ +  +    DS  A 
Sbjct: 12  AVVKSAAYDPLKAPNYFEEFVHRFNKNYSSEVEKLRRFKIFQHNLNEIINKNQNDS--AK 69

Query: 237 FGVNKFFDLSESD-LQQLTGLNLDSTLEDIQPSL---QAPFSSNQTDTEMRAFQFNSLRH 292
           + +NKF DLS+ + + + TGL+L +  ++    +   Q P                    
Sbjct: 70  YEINKFSDLSKDETIAKYTGLSLPTQTQNFCKVILLDQPPGKG----------------- 112

Query: 293 GDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCD 352
               P  FDWR    ++ VK QG C  CWAF+ +G +E+  AI+ N L  LS QQ++DCD
Sbjct: 113 ----PLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHNELINLSEQQMIDCD 168

Query: 353 MSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIP 412
             + GCNGG +  A + II  GGV  +  YPY+A  +   C +   + F V+VK+  R  
Sbjct: 169 FVDAGCNGGLLHTAFEAIIKMGGVQLESDYPYEADNN--NCRMNSNK-FLVQVKDCYRYI 225

Query: 413 YGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVID------LNQRL----YGT--SIPYW 460
              EE++K  +   GP+ + ++A  +  Y  G+I       LN  +    YG   +IPYW
Sbjct: 226 IVYEEKLKDLLPLVGPIPMAIDAADIVNYKQGIIKYCFDSGLNHAVLLVGYGVENNIPYW 285

Query: 461 IVKNSWGSDWGE----KVEDKVGSSGNRTRDLELTGVL 494
             KN+WG+DWGE    +V+  + + G R  +L  T V+
Sbjct: 286 TFKNTWGTDWGEDGFFRVQQNINACGMRN-ELASTAVI 322

Cysteine protease that plays an essential role in host liquefaction to facilitate horizontal transmission of the virus. May participate in the degradation of foreign protein expressed by the baculovirus system.

Bombyx mori (taxid: 7091)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 5

EC: 0

>sp|Q6VTL7|CATV_NPVCD Viral cathepsin OS=Choristoneura fumiferana defective polyhedrosis virus GN=Vcath PE=3 SV=1

 Score =  153 bits (386), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 102/303 (33%), Positives = 162/303 (53%), Gaps = 39/303 (12%)

Query: 197 VQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESD-LQQLTG 255
           + + +K YSS  + L R + F  N+E+  +    D+ +A + +NKF DLS+ + + + TG
Sbjct: 32  LHNFNKNYSSKSEKLHRFKIFQHNLEEIINKNLNDT-SAQYEINKFSDLSKDETISKYTG 90

Query: 256 LNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQG 315
           L+L          LQ     NQ   E+        R  D  P  FDWR    ++ VK QG
Sbjct: 91  LSL---------PLQ-----NQNFCEVVVLN----RPPDKGPLEFDWRRLNKVTSVKNQG 132

Query: 316 KCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGG 375
            C  CWAF+ +G +E+  AI+ + L  LS QQL+DCD  + GC+GG +  A + +++ GG
Sbjct: 133 TCGACWAFATLGSLESQFAIKHDQLINLSEQQLIDCDFVDMGCDGGLLHTAYEAVMNMGG 192

Query: 376 VVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNA 435
           + ++  YPY+A+  +  C +   + F VKVK+  R     EE++K  +   GPL V ++A
Sbjct: 193 IQAENDYPYEANNGD--CRLNAAK-FVVKVKKCYRYVLMFEEKLKDLLRIVGPLPVAIDA 249

Query: 436 NGLFYYSGGVID------LNQR--LYGTS----IPYWIVKNSWGSDWGE----KVEDKVG 479
           + +  Y  GVI       LN    L G +    +P+WI+KN+WG+DWGE    +V+  + 
Sbjct: 250 SDIVNYKRGVIRYCANHGLNHAVLLVGYAVENGVPFWILKNTWGTDWGEQGYFRVQQNIN 309

Query: 480 SSG 482
           + G
Sbjct: 310 ACG 312

Cysteine protease that plays an essential role in host liquefaction to facilitate horizontal transmission of the virus. May participate in the degradation of foreign protein expressed by the baculovirus system.

Lepidoptera (taxid: 7088)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 5

EC: 0

>sp|Q91GE3|CATV_NPVEP Viral cathepsin OS=Epiphyas postvittana nucleopolyhedrovirus GN=VCATH PE=3 SV=1

 Score =  152 bits (385), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 108/327 (33%), Positives = 162/327 (49%), Gaps = 40/327 (12%)

Query: 173 WAFSAVGVVEAMHAIQGNNLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDS 232
           W    V    A   ++  N  E  V+ ++K Y S  + LRR++ F  N+         D 
Sbjct: 8   WFVYGVVCSAAYDILKAPNYFEEFVRQYNKQYDSEYEKLRRYKIFQHNLNDIITKNRND- 66

Query: 233 GTAVFGVNKFFDLSESD-LQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLR 291
            TAV+ +NKF DLS+ + + + TGL+L             P  + Q   E+        R
Sbjct: 67  -TAVYKINKFSDLSKDETIAKYTGLSL-------------PLHT-QNFCEVVVLD----R 107

Query: 292 HGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDC 351
                P  FDWR    I+ VK QG C  CWAF+ +  +E+  AI  + L  LS QQ++DC
Sbjct: 108 PPGKGPLEFDWRRFNKITSVKNQGMCGACWAFATLASLESQFAIAHDRLINLSEQQMIDC 167

Query: 352 DMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRI 411
           D  + GC GG +  A + II  GGV  +  YPY++S +   C + +   F V VK+ +R 
Sbjct: 168 DSVDVGCEGGLLHTAFEAIISMGGVQIENDYPYESSNNY--CRM-DPTKFVVGVKQCNRY 224

Query: 412 PYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVID------LNQRL----YGT--SIPY 459
               EE++K  +   GP+ V ++A+ +  Y  G+I       LN  +    YG   ++PY
Sbjct: 225 ITIYEEKLKDVLRLAGPIPVAIDASDILNYEQGIIKYCANNGLNHAVLLVGYGVENNVPY 284

Query: 460 WIVKNSWGSDWGE----KVEDKVGSSG 482
           WI+KNSWG+DWGE    K++  V + G
Sbjct: 285 WILKNSWGTDWGEQGFFKIQQNVNACG 311

Cysteine protease that plays an essential role in host liquefaction to facilitate horizontal transmission of the virus. May participate in the degradation of foreign protein expressed by the baculovirus system.

Lepidoptera (taxid: 7088)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 5

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	655
345493482	514	PREDICTED: cathepsin L-like [Nasonia vit	0.658	0.838	0.320	9e-51
391328503	506	PREDICTED: digestive cysteine proteinase	0.624	0.808	0.311	8e-50
86279349	416	putative cathepsin L-like proteinase [Te	0.517	0.814	0.353	1e-45
74273320	364	secreted cathepsin F [Teladorsagia circu	0.4	0.719	0.344	2e-43
308506829	475	CRE-TAG-196 protein [Caenorhabditis rema	0.395	0.545	0.373	1e-42
71993922	477	Protein TAG-196 [Caenorhabditis elegans]	0.395	0.542	0.373	2e-42
244790097	586	cathepsin F isoform 2 precursor [Acyrtho	0.392	0.438	0.317	5e-42
195497262	615	GE25302 [Drosophila yakuba] gi|194182127	0.381	0.406	0.339	2e-41
393906608	472	ctsf protein [Loa loa]	0.392	0.544	0.351	2e-41
312080834	437	ctsf protein [Loa loa]	0.390	0.585	0.350	3e-41

>gi|345493482|ref|XP_001602523.2| PREDICTED: cathepsin L-like [Nasonia vitripennis]

 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 156/486 (32%), Positives = 240/486 (49%), Gaps = 55/486 (11%)

Query: 195 LSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAV---FGVNKFFDLSESD-L 250
             VQH     S +E+  R  + F+ N  K   + ++     V     +NK+ D+   + +
Sbjct: 31  FKVQHKKGYNSDIEEKFRM-KIFMENKHKIAKHNAKYEMGLVPYKLQINKYADMLHHEFV 89

Query: 251 QQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISK 310
             L G N   T   +  S Q P  +          +F +  H  +LP++ DWR EG ++ 
Sbjct: 90  NTLNGFN--KTKPGMLQSYQKPVGA----------KFIAPAH-VELPKSVDWRQEGAVTP 136

Query: 311 VKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCD--MSNGGCNGGRMDDALQ 368
           +K+QG C  CW+FSA G +E  H  Q   L  LS Q L+DC     N GCNGG MD+A +
Sbjct: 137 IKDQGHCGSCWSFSATGALEGQHFRQTGKLVSLSEQNLIDCSGKYGNNGCNGGLMDNAFK 196

Query: 369 YIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGP 428
           YI DN G+ ++  YPY+A + E  C           V  +  IP G+EE++K  +AT GP
Sbjct: 197 YIRDNKGLDTESTYPYEAEDDE--CRYNARNSGAEDVG-FVDIPEGDEEKLKAAIATIGP 253

Query: 429 LSVGMNAN--GLFYYSGGVIDLNQRLYGTSIPYWIVKNSWGSD------WGEKVEDKVGS 480
           +SV ++A+     +YS GV         T + + ++   +G+       W +     V +
Sbjct: 254 VSVAIDASHQTFQFYSTGVY-YEPECSSTELDHGVLVVGYGTSEDGQDYWKQGAVTPVKN 312

Query: 481 SGN--RTRDLELTGVLPSKLSR-------LATEKLVDCD--MSNGGCNGGRMDDALQYII 529
            GN         TG L  +  R       L+ + LVDC     N GC+GG M++A  Y+ 
Sbjct: 313 QGNCGSCWAFSATGSLEGQHFRHNGSLISLSEQNLVDCSGRFGNDGCDGGLMNNAFTYVK 372

Query: 530 DNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSV 589
            N G+ S+++YPY+A E +R C    +         Y  IP G E +++  VAT GP+SV
Sbjct: 373 VNRGLDSEKSYPYEA-EDDR-CRYNPKNS-AADDAGYVNIPTGSESKLQAAVATVGPISV 429

Query: 590 GMNANG---LFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWG 646
            ++A+    +FY+SG   + +   C+    +H ++ +GYG + K   T   +W+VKNSWG
Sbjct: 430 AIDADSDSFMFYHSGVYYEPD---CSRTDLDHGVLAIGYGTDSK---TGKQFWLVKNSWG 483

Query: 647 SDWGEK 652
            DWGEK
Sbjct: 484 EDWGEK 489

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391328503|ref|XP_003738728.1| PREDICTED: digestive cysteine proteinase 3-like [Metaseiulus occidentalis]

 Score =  205 bits (521), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 144/462 (31%), Positives = 227/462 (49%), Gaps = 53/462 (11%)

Query: 213 RHENFVTNVEKAEDYQ-SEDSGTAVF--GVNKFFDLSESDLQQLTGLNLDSTLEDIQPSL 269
           R   F  NV++   +  + D G   +  G+N+F D+S S+ + + GL             
Sbjct: 50  RQRIFNENVDRINAHNLAHDLGLTSYRMGLNEFTDMSRSEYELVRGLR------------ 97

Query: 270 QAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVV 329
              +S  QT      F         +LP+  D+R  G ++ VK QG C  CWAFSA G +
Sbjct: 98  ---YSGEQTARTGHPFTLTQ-NPDRELPKKVDYRKSGHVTPVKNQGLCGSCWAFSATGSL 153

Query: 330 EAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASES 389
           E   +IQ  +L  LS Q L+DC   N GC+GG MD A +YI  NGG+ ++++YPY     
Sbjct: 154 EGQLSIQNGTLVSLSEQNLLDCSRENQGCDGGYMDKAFEYIKKNGGIDTEESYPYTG--- 210

Query: 390 ERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNA--NGLFYYSGGVID 447
            +G  + +++    +V  +  +P  +E+ +K  VA  GP+SVG++A  +   +Y  G+ D
Sbjct: 211 RKGKCMFKKKNIGARVTGHVDVPAEDEQALKLAVAKIGPISVGIDASKDSFRFYKEGIYD 270

Query: 448 LNQRLYGTSIPYWIVKNSWGSDWGE-----------KVEDKVGSSGNRTRDLELTG---V 493
                  + + + ++   +GS+ G+           K + + GS    +    L G    
Sbjct: 271 -ESSCSTSQLDHGVLVVGYGSEKGKDYWLEGYVTPVKDQGQCGSCWAFSTTGSLEGQHFK 329

Query: 494 LPSKLSRLATEKLVDC--DMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGC 551
              KL  L+ + LVDC  D  N GC GG MD    YI +NGG+ ++++YPY A   E G 
Sbjct: 330 ATGKLVSLSEQNLVDCSGDEGNNGCEGGLMDQGFTYIKNNGGIDTEESYPYNA---EDGD 386

Query: 552 LVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNA--NGLFYYSGGVIDLNQR 609
              +      +V  +  I  G E+ ++K VAT GP+SV ++A  +    Y  G+ D  + 
Sbjct: 387 CAFKSNAVGARVTGFVDIDSGSEKALQKAVATVGPVSVAIDASNDSFQLYKEGIYD--EP 444

Query: 610 LCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
            C+    +H ++ VGYG E   D     YW+VKNSW + WG+
Sbjct: 445 ACSSTQLDHGVLAVGYGSENGVD-----YWLVKNSWNTVWGQ 481

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|86279349|gb|ABC88770.1| putative cathepsin L-like proteinase [Tenebrio molitor]

 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 133/376 (35%), Positives = 194/376 (51%), Gaps = 37/376 (9%)

Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS- 354
           L  + DWR+   +S+VK+QG+C  CW+FS  G +E   A+Q   LT LS Q L+DC  S 
Sbjct: 35  LAASVDWRSN-AVSEVKDQGQCGSCWSFSTTGAIEGQLALQRGRLTSLSEQNLIDCSSSY 93

Query: 355 -NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPY 413
            N GC+GG MD A  YI D  G++S+ AYPY+A      C     +     +  Y  +P 
Sbjct: 94  GNAGCDGGWMDSAFSYIHDY-GIMSESAYPYEAQGDY--CRFDSSQSV-TTLSGYYDLPS 149

Query: 414 GEEEEMKKWVATRGPLSVGMNANG-LFYYSGGVI--------DLNQRLYGTSIPYWIVKN 464
           G E  +   V   GP++V ++A   L +YSGG+         DLN  +    + Y     
Sbjct: 150 GGENSLADAVGQAGPVAVAIDATDELQFYSGGLFYDQTCNQSDLNHGV--LVVGYGSDNG 207

Query: 465 SWGSDWGEKVED--KVGSSGNRTRDLELTGVLP---SKLSRLATEKLVDCDMS--NGGCN 517
            WGS+   +V+D  + GS  + +    + G L     +L+ L+ + L+DC  S  N GC+
Sbjct: 208 HWGSNAVSEVKDQGQCGSCWSFSTTGAIEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCD 267

Query: 518 GGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEM 577
           GG MD A  YI D  G++S+ AYPY+A      C     + F   +  Y  +P G E  +
Sbjct: 268 GGWMDSAFSYIPDY-GIMSEFAYPYEAQGDY--CRFDSSQ-FVTTLSGYYDLPSGGENSL 323

Query: 578 KKWVATRGPLSVGMNA-NGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSI 636
              V   GP++V ++A + L +YSGG+     + CN    NH + +VGYG +  +D    
Sbjct: 324 ADAVGQAGPVAVAIDAPDELQFYSGGL--FYDQTCNQSDLNHGVFVVGYGSDNGQD---- 377

Query: 637 PYWIVKNSWGSDWGEK 652
            YWI+KNSWG  WGE 
Sbjct: 378 -YWILKNSWGFGWGES 392

Source: Tenebrio molitor

Species: Tenebrio molitor

Genus: Tenebrio

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|74273320|gb|ABA01328.1| secreted cathepsin F [Teladorsagia circumcincta]

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/299 (34%), Positives = 159/299 (53%), Gaps = 37/299 (12%)

Query: 190 NNLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESD 249
           N+ T   ++ HDKVY +  + L+R   F  N+E     Q  D GTA++G+N+F DLS  +
Sbjct: 62  NHFTSF-IERHDKVYRNESEALKRFGIFKRNLEIIRSAQENDKGTAIYGINQFADLSPEE 120

Query: 250 LQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNS--LRHGDDLPEAFDWRAEGV 307
            ++                   P +  Q D   R     +  +   + LPE+FDWR  G 
Sbjct: 121 FKKT----------------HLPHTWKQPDHPNRIVDLAAEGVDPKEPLPESFDWREHGA 164

Query: 308 ISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDAL 367
           ++KVK +G CA CWAFS  G +E    +    L  LS QQL+DCD+ + GCNGG   DA 
Sbjct: 165 VTKVKTEGHCAACWAFSVTGNIEGQWFLAKKKLVSLSAQQLLDCDVVDEGCNGGFPLDAY 224

Query: 368 QYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRG 427
           + I+  GG+  +  YPY+A ++E+  LV  +    V +     +P+ +EE+M+ W+  +G
Sbjct: 225 KEIVRMGGLEPEDKYPYEA-KAEQCRLVPSD--IAVYINGSVELPH-DEEKMRAWLVKKG 280

Query: 428 PLSVGMNANGLFYYSGGV-----IDLNQRLYGT---------SIPYWIVKNSWGSDWGE 472
           P+S+G+  + + +Y GGV       L+  ++G          +IPYWI+KNSWG +WGE
Sbjct: 281 PISIGITVDDIQFYKGGVSRPTTCRLSSMIHGALLVGYGVEKNIPYWIIKNSWGPNWGE 339

Source: Teladorsagia circumcincta

Species: Teladorsagia circumcincta

Genus: Teladorsagia

Family: Trichostrongylidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|308506829|ref|XP_003115597.1| CRE-TAG-196 protein [Caenorhabditis remanei] gi|308256132|gb|EFP00085.1| CRE-TAG-196 protein [Caenorhabditis remanei]

 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/292 (37%), Positives = 156/292 (53%), Gaps = 33/292 (11%)

Query: 197 VQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLTGL 256
           +  H+K YS+  ++L+R   F  N +   + Q  + GTAV+G  KF D++  + +Q    
Sbjct: 176 IDRHEKRYSNKREVLKRFRTFKKNAKAIRELQKNEQGTAVYGFTKFSDMTTMEFKQ---- 231

Query: 257 NLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGK 316
               T+   Q   Q  +  +Q D E      +     +DLPE+FDWR +G +++VK QG 
Sbjct: 232 ----TMLPYQWE-QPVYPMDQADFEKEGITISE----EDLPESFDWRDKGAVTQVKNQGN 282

Query: 317 CACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGV 376
           C  CWAFS  G VE    +  N L  LS Q+LVDCD  + GCNGG   +A + II  GG+
Sbjct: 283 CGSCWAFSTTGNVEGAWFLAKNKLVSLSEQELVDCDGVDQGCNGGLPSNAYKEIIRMGGL 342

Query: 377 VSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNAN 436
             + AYPY   + E   LV ++    V +     +P+ +E EM+KW+ T+GP+S+G+NAN
Sbjct: 343 EPEDAYPYDG-KGETCHLVRKD--IAVYINGSIELPH-DEVEMQKWLVTKGPISIGLNAN 398

Query: 437 GLFYYSGGVID----------LNQRL----YGT--SIPYWIVKNSWGSDWGE 472
            L +Y  GV+           LN  +    YG     PYWIVKNSWG  WGE
Sbjct: 399 TLQFYRHGVVHPFKIFCEPFMLNHGVLIVGYGKDGRKPYWIVKNSWGPTWGE 450

Source: Caenorhabditis remanei

Species: Caenorhabditis remanei

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|71993922|ref|NP_505215.2| Protein TAG-196 [Caenorhabditis elegans] gi|351050011|emb|CCD64084.1| Protein TAG-196 [Caenorhabditis elegans]

 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/292 (37%), Positives = 155/292 (53%), Gaps = 33/292 (11%)

Query: 197 VQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLTGL 256
           V  H+K Y++  ++L+R   F  N +   + Q  + GTAV+G  KF D++  + +++   
Sbjct: 178 VDRHEKKYTNKREVLKRFRVFKKNAKVIRELQKNEQGTAVYGFTKFSDMTTMEFKKIM-- 235

Query: 257 NLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGK 316
            L    E      Q  +   Q + E      N     +DLPE+FDWR +G +++VK QG 
Sbjct: 236 -LPYQWE------QPVYPMEQANFEKHDVTINE----EDLPESFDWREKGAVTQVKNQGN 284

Query: 317 CACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGV 376
           C  CWAFS  G VE    I  N L  LS Q+LVDCD  + GCNGG   +A + II  GG+
Sbjct: 285 CGSCWAFSTTGNVEGAWFIAKNKLVSLSEQELVDCDSMDQGCNGGLPSNAYKEIIRMGGL 344

Query: 377 VSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNAN 436
             + AYPY     E   LV ++    V +     +P+ +E EM+KW+ T+GP+S+G+NAN
Sbjct: 345 EPEDAYPYDG-RGETCHLVRKD--IAVYINGSVELPH-DEVEMQKWLVTKGPISIGLNAN 400

Query: 437 GLFYYSGGVID----------LNQRL----YGT--SIPYWIVKNSWGSDWGE 472
            L +Y  GV+           LN  +    YG     PYWIVKNSWG +WGE
Sbjct: 401 TLQFYRHGVVHPFKIFCEPFMLNHGVLIVGYGKDGRKPYWIVKNSWGPNWGE 452

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|244790097|ref|NP_001156454.1| cathepsin F isoform 2 precursor [Acyrthosiphon pisum]

 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 157/299 (52%), Gaps = 42/299 (14%)

Query: 197 VQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLTGL 256
           +  H+K+Y+S+E+  RR   F  N++K +  Q+ + G+A++G  +F DL++++ ++   L
Sbjct: 284 IMTHNKIYTSLEEKSRRFRIFAANMKKVKLLQNHEQGSAIYGATQFADLTKNEFKK-KYL 342

Query: 257 NLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGK 316
            LDS++                 T  +      +     +P  FDWR   V++ VK QG 
Sbjct: 343 GLDSSM-----------------TSKKTLPMAVIPQSASIPNEFDWRNHNVVTPVKNQGA 385

Query: 317 CACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGV 376
           C  CWAFSA+  +E  +A++   L  LS Q+L+DCD  + GC GG M  A + + + GG+
Sbjct: 386 CGSCWAFSAIANIEGQYALKSKELLSLSEQELIDCDNLDNGCGGGLMTQAFEAVENLGGL 445

Query: 377 VSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNAN 436
            ++  YPY+     +GC + + +  KV + +   +   +EE++ K++   GPLSVG+NAN
Sbjct: 446 ETESDYPYEGHADRKGCQLKKSD-VKVSISKAVNVS-TDEEDIAKFLVKHGPLSVGVNAN 503

Query: 437 GLFYYSGGVIDLNQRL--------------YGT--------SIPYWIVKNSWGSDWGEK 473
            + +Y GGV      L              YG         ++PYW++KNSWG  WGEK
Sbjct: 504 AMQFYMGGVSHPIHALCSPKSLDHGVAIVGYGVHRTKYTHKNLPYWLIKNSWGPGWGEK 562

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195497262|ref|XP_002096026.1| GE25302 [Drosophila yakuba] gi|194182127|gb|EDW95738.1| GE25302 [Drosophila yakuba]

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/292 (33%), Positives = 150/292 (51%), Gaps = 42/292 (14%)

Query: 204 YSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLTGLNLDSTLE 263
           Y S  +   R   F  N++  E     + G+A +G+ +F D++ S+ ++ TGL       
Sbjct: 320 YVSTAERQMRLRIFRQNLKTIEQLNVNEMGSAKYGITEFADMTSSEYKERTGL------- 372

Query: 264 DIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAF 323
                    +  N+      +       HG+ LP+ FDWR +  +++VK QG C  CWAF
Sbjct: 373 ---------WQRNEAKATGGSVAVVPAYHGE-LPKEFDWRQKNAVTQVKNQGSCGSCWAF 422

Query: 324 SAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYP 383
           S  G +E +HA++   L E S Q+L+DCD ++  CNGG MD+A + I D GG+  +  YP
Sbjct: 423 SVTGNIEGLHAVKTGDLKEFSEQELLDCDTTDSACNGGLMDNAYKAIKDIGGLEYEAEYP 482

Query: 384 YKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSG 443
           YKA +++  C         V+V  +  +P G E  M++W+ T GP+S+G+NAN + +Y G
Sbjct: 483 YKAKKNQ--CHFNRTLSH-VQVAGFVDLPKGNETAMQEWLLTNGPISIGINANAMQFYRG 539

Query: 444 GVIDLNQRL--------------YGTS--------IPYWIVKNSWGSDWGEK 473
           GV    + L              YG S        +PYWIVKNSWG  WGE+
Sbjct: 540 GVSHPWKALCSKKNLDHGVLVVGYGVSEYPNFHKTLPYWIVKNSWGPRWGEQ 591

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|393906608|gb|EFO21301.2| ctsf protein [Loa loa]

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/293 (35%), Positives = 149/293 (50%), Gaps = 36/293 (12%)

Query: 197 VQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLTGL 256
           ++   + YSSV + L R + ++ N+   E  Q E+ GTA++GV +F D+S  + Q+    
Sbjct: 174 IKKFKREYSSVAEQLDRFKKYMQNLHFVEKLQHEEKGTAIYGVTQFSDMSPEEFQK---- 229

Query: 257 NLDSTLEDIQPSLQAP-FSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQG 315
                   + PSL      SN  + +++ F        ++LPE FDWR +GV++ VK QG
Sbjct: 230 -------TMLPSLWWDRVVSNGVEYDLKKFNLTF----NNLPEQFDWRTKGVVTPVKNQG 278

Query: 316 KCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGG 375
            C  CWAFS  G +E + AI+   L  LS Q+L+DCD  + GCNGG   +A + I   GG
Sbjct: 279 SCGSCWAFSVTGNIEGLWAIKTGKLISLSEQELIDCDRIDKGCNGGLPINAFREIQRMGG 338

Query: 376 VVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNA 435
           +  +  YPYKA     G          V + +   IP   E  MK W+  RGPLSVG++A
Sbjct: 339 LEPEDQYPYKA---RNGTCHLIRSAIAVTIDDAVEIPRN-ETVMKAWIVQRGPLSVGIDA 394

Query: 436 NGLFYYSGGVIDLNQRL--------------YGTS--IPYWIVKNSWGSDWGE 472
             L YY  G++  ++                YG    +PYW +KNSWG  WGE
Sbjct: 395 KLLAYYKSGILHPSRSRCPPSGIDHGVLITGYGVENGLPYWTIKNSWGDQWGE 447

Source: Loa loa

Species: Loa loa

Genus: Loa

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|312080834|ref|XP_003142769.1| ctsf protein [Loa loa]

 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 149/294 (50%), Gaps = 38/294 (12%)

Query: 197 VQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQ--LT 254
           ++   + YSSV + L R + ++ N+   E  Q E+ GTA++GV +F D+S  + Q+  L 
Sbjct: 139 IKKFKREYSSVAEQLDRFKKYMQNLHFVEKLQHEEKGTAIYGVTQFSDMSPEEFQKTMLP 198

Query: 255 GLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQ 314
            L  D  +            SN  + +++ F        ++LPE FDWR +GV++ VK Q
Sbjct: 199 SLWWDRVV------------SNGVEYDLKKFNLTF----NNLPEQFDWRTKGVVTPVKNQ 242

Query: 315 GKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNG 374
           G C  CWAFS  G +E + AI+   L  LS Q+L+DCD  + GCNGG   +A + I   G
Sbjct: 243 GSCGSCWAFSVTGNIEGLWAIKTGKLISLSEQELIDCDRIDKGCNGGLPINAFREIQRMG 302

Query: 375 GVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMN 434
           G+  +  YPYKA     G          V + +   IP   E  MK W+  RGPLSVG++
Sbjct: 303 GLEPEDQYPYKA---RNGTCHLIRSAIAVTIDDAVEIPR-NETVMKAWIVQRGPLSVGID 358

Query: 435 ANGLFYYSGGVIDLNQRL--------------YGTS--IPYWIVKNSWGSDWGE 472
           A  L YY  G++  ++                YG    +PYW +KNSWG  WGE
Sbjct: 359 AKLLAYYKSGILHPSRSRCPPSGIDHGVLITGYGVENGLPYWTIKNSWGDQWGE 412

Source: Loa loa

Species: Loa loa

Genus: Loa

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	655
WB|WBGene00007055	477	tag-196 [Caenorhabditis elegan	0.395	0.542	0.369	1.2e-42
UNIPROTKB|F1RU23	367	CTSW "Uncharacterized protein"	0.348	0.621	0.350	1.3e-40
UNIPROTKB|Q4QRC2	343	Ctsql2 "Protein Ctsql2" [Rattu	0.348	0.664	0.334	1.6e-30
UNIPROTKB|E9PSK9	342	Ctsql2 "Protein Ctsql2" [Rattu	0.406	0.777	0.324	1.3e-34
TAIR|locus:2152445	346	SAG12 "senescence-associated g	0.392	0.742	0.358	2.1e-40
DICTYBASE|DDB_G0290957	343	cprA "cysteine proteinase 1" [	0.374	0.714	0.336	1.5e-28
FB|FBgn0013770	371	Cp1 "Cysteine proteinase-1" [D	0.395	0.698	0.360	4.9e-35
TAIR|locus:2090614	452	AT3G19390 [Arabidopsis thalian	0.271	0.393	0.420	4.4e-40
MGI|MGI:107341	340	Ctss "cathepsin S" [Mus muscul	0.312	0.602	0.396	1.7e-36
TAIR|locus:2038588	348	AT2G27420 [Arabidopsis thalian	0.393	0.741	0.339	1.7e-35

WB|WBGene00007055 tag-196 [Caenorhabditis elegans (taxid:6239)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 108/292 (36%), Positives = 151/292 (51%)

Query:   197 VQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLTGL 256
             V  H+K Y++  ++L+R   F  N +   + Q  + GTAV+G  KF D++  + +++   
Sbjct:   178 VDRHEKKYTNKREVLKRFRVFKKNAKVIRELQKNEQGTAVYGFTKFSDMTTMEFKKIM-- 235

Query:   257 NLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGK 316
              L    E  QP     +   Q + E      N     +DLPE+FDWR +G +++VK QG 
Sbjct:   236 -LPYQWE--QPV----YPMEQANFEKHDVTINE----EDLPESFDWREKGAVTQVKNQGN 284

Query:   317 CACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGV 376
             C  CWAFS  G VE    I  N L  LS Q+LVDCD  + GCNGG   +A + II  GG+
Sbjct:   285 CGSCWAFSTTGNVEGAWFIAKNKLVSLSEQELVDCDSMDQGCNGGLPSNAYKEIIRMGGL 344

Query:   377 VSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN 436
               + AYPY     E   L                +P+ +E EM+KW+ T+GP+S+G+NAN
Sbjct:   345 EPEDAYPYDG-RGETCHLVRKDIAVYINGSV--ELPH-DEVEMQKWLVTKGPISIGLNAN 400

Query:   437 GLFYYSGGVID----------LNQRL----YGTS--IPYWIVKNSWGSDWGE 472
              L +Y  GV+           LN  +    YG     PYWIVKNSWG +WGE
Sbjct:   401 TLQFYRHGVVHPFKIFCEPFMLNHGVLIVGYGKDGRKPYWIVKNSWGPNWGE 452

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|F1RU23 CTSW "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 358 (131.1 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
 Identities = 87/248 (35%), Positives = 132/248 (53%)

Query:   200 HDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLTGLNLD 259
             +++ YS+  +  RR + F  N+ KA+  Q ED GTA FGV  F DL+E +  QL G +  
Sbjct:    49 YNRSYSNPAEHARRLDIFAQNLAKAQRLQEEDLGTAEFGVTPFSDLTEEEFGQLHGHHWG 108

Query:   260 STLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAE-GVISKVKEQGKCA 318
             +      PS+     S ++              G+ +P++ DWR + GVIS +K Q  C 
Sbjct:   109 AGKA---PSMGIKVGSEES--------------GETVPQSCDWRKKPGVISAIKHQKDCN 151

Query:   319 CCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVVS 378
             CCWA +AV  VEA  AI+ +   +LSVQQ++DCD    GCNGG + DA   +++  G+ S
Sbjct:   152 CCWAMAAVDNVEAQWAIKYHQAVQLSVQQVLDCDRCGNGCNGGFVWDAFLTVLNTSGLAS 211

Query:   379 DQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGL 438
             +Q YPYK +     CL             +  + + E+  + +++AT GP++V +NA  L
Sbjct:   212 EQDYPYKGTVKTHRCLAKQHRKVAWIQD-FLMLQFCEQS-IARYLATEGPITVTINAGLL 269

Query:   439 FYYSGGVI 446
               Y  GVI
Sbjct:   270 QQYKRGVI 277

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|Q4QRC2 Ctsql2 "Protein Ctsql2" [Rattus norvegicus (taxid:10116)]

 Score = 343 (125.8 bits), Expect = 1.6e-30, P = 1.6e-30
 Identities = 86/257 (33%), Positives = 136/257 (52%)

Query:   200 HDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDS---GTAVFGVNKFFDLSESDLQQL-TG 255
             ++K+YS  E+LL+R   +  NV+K E +  E+S    T +  +N F DL++ + + + TG
Sbjct:    36 YEKLYSPEEELLKRVV-WEENVKKIELHNRENSLGKNTYIMEINNFADLTDEEFKDMITG 94

Query:   256 LNL--DSTLEDI-QPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVK 312
             + L  ++T++ + + +L +PF              NS    D LP++ DWR EG +++V+
Sbjct:    95 ITLPINNTMKSLWKRALGSPFP-------------NSWYWRDALPKSIDWRKEGYVTRVR 141

Query:   313 EQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG--GCNGGRMDDALQYI 370
             EQGKC  CWAF   G +E     +   LT LSVQ LVDC    G  GC GG   +A QY+
Sbjct:   142 EQGKCKSCWAFPVAGAIEGQMFKKTGKLTPLSVQNLVDCSKPQGNKGCRGGTTYNAFQYV 201

Query:   371 IDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLS 430
             + NGG+ S+  YPYK  E   G               +  +P  E+  M   +AT+GP++
Sbjct:   202 LQNGGLESEATYPYKGKE---GLCKYNPKNAYAKITRFVALPEDEDVLMDA-LATKGPVA 257

Query:   431 VGMNA--NGLFYYSGGV 445
              G++   + L +Y  G+
Sbjct:   258 AGIHVVYSSLRFYKKGI 274

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|E9PSK9 Ctsql2 "Protein Ctsql2" [Rattus norvegicus (taxid:10116)]

 Score = 380 (138.8 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 101/311 (32%), Positives = 155/311 (49%)

Query:   200 HDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDS---GTAVFGVNKFFDLSESDLQQL-TG 255
             ++K+YS  E+LL+R   +  NV+K E +  E+S    T +  +N F DL++ + + + TG
Sbjct:    36 YEKLYSPEEELLKRVV-WEENVKKIELHNRENSLGKNTYIMEINNFADLTDEEFKDMITG 94

Query:   256 LNL--DSTLEDI-QPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVK 312
             + L  ++T++ + + +L +PF              NS    D LP++ DWR EG +++V+
Sbjct:    95 ITLPINNTMKSLWKRALGSPFP-------------NSWYWRDALPKSIDWRKEGYVTRVR 141

Query:   313 EQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG--GCNGGRMDDALQYI 370
             EQGKC  CWAF   G +E     +   LT LSVQ LVDC    G  GC GG   +A QY+
Sbjct:   142 EQGKCKSCWAFPVAGAIEGQMFKKTGKLTPLSVQNLVDCSKPQGNKGCRGGTTYNAFQYV 201

Query:   371 IDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLS 430
             + NGG+ S+  YPYK  E   G               +  +P  E+  M   +AT+GP++
Sbjct:   202 LQNGGLESEATYPYKGKE---GLCKYNPKNAYAKITRFVALPEDEDVLMDA-LATKGPVA 257

Query:   431 VGMNA-NGLFYYSGGVID---LNQRL--------YG------TSIPYWIVKNSWGSDWGE 472
              G++     F++  G+      N R+        YG          YW++KNSWG  WG 
Sbjct:   258 AGIHVVYSYFHFVSGIYHEPKCNNRVNHAVLVVGYGFEGNETDGNNYWLIKNSWGKQWGL 317

Query:   473 KVEDKVGSSGN 483
             K   K+    N
Sbjct:   318 KGYMKIAKDRN 328

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

TAIR|locus:2152445 SAG12 "senescence-associated gene 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 2.1e-40, P = 2.1e-40
 Identities = 104/290 (35%), Positives = 151/290 (52%)

Query:   200 HDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSG-TAVFGVNKFFDLSESDLQQL-TGLN 257
             H +VY+ V++   R+  F  NVE+ E   S  +G T    VN+F DL+  + + + TG  
Sbjct:    45 HGRVYADVKEENNRYVVFKNNVERIEHLNSIPAGRTFKLAVNQFADLTNDEFRSMYTGFK 104

Query:   258 LDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKC 317
               S L            S+Q+ T+M  F++ ++  G  LP + DWR +G ++ +K QG C
Sbjct:   105 GVSAL------------SSQSQTKMSPFRYQNVSSGA-LPVSVDWRKKGAVTPIKNQGSC 151

Query:   318 ACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVV 377
              CCWAFSAV  +E    I+   L  LS QQLVDCD ++ GC GG MD A ++I   GG+ 
Sbjct:   152 GCCWAFSAVAAIEGATQIKKGKLISLSEQQLVDCDTNDFGCEGGLMDTAFEHIKATGGLT 211

Query:   378 SDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG 437
             ++  YPYK  ++   C              Y  +P  +E+ + K VA + P+SVG+   G
Sbjct:   212 TESNYPYKGEDAT--CNSKKTNPKATSITGYEDVPVNDEQALMKAVAHQ-PVSVGIEGGG 268

Query:   438 L-F-YYSGGVID------LNQRL----YGTSI---PYWIVKNSWGSDWGE 472
               F +YS GV        L+  +    YG S     YWI+KNSWG+ WGE
Sbjct:   269 FDFQFYSSGVFTGECTTYLDHAVTAIGYGESTNGSKYWIIKNSWGTKWGE 318

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0007568 "aging" evidence=IEP;TAS

GO:0010150 "leaf senescence" evidence=IEP;TAS

GO:0010282 "senescence-associated vacuole" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IEP

DICTYBASE|DDB_G0290957 cprA "cysteine proteinase 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 325 (119.5 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 95/282 (33%), Positives = 130/282 (46%)

Query:   201 DKVYSSVEDLLRRHENFVTNVEKAEDYQS---EDSGTAVFGVNKFFDLSESDLQQLTGLN 257
             +K YS  E+ L R E F +N+ K E+             FGVNKF DLS  + +     N
Sbjct:    37 NKKYSH-EEYLERFEIFKSNLGKIEELNLIAINHKADTKFGVNKFADLSSDEFKNYYLNN 95

Query:   258 LDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKC 317
              ++   D  P       ++  D E      NS+      P AFDWR  G ++ VK QG+C
Sbjct:    96 KEAIFTDDLPV------ADYLDDEF----INSI------PTAFDWRTRGAVTPVKNQGQC 139

Query:   318 ACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS----NG------GCNGGRMDDAL 367
               CW+FS  G VE  H I  N L  LS Q LVDCD       G      GCNGG   +A 
Sbjct:   140 GSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEQACDEGCNGGLQPNAY 199

Query:   368 QYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRG 427
              YII NGG+ ++ +YPY A E+   C              ++ IP  E   M  ++ + G
Sbjct:   200 NYIIKNGGIQTESSYPYTA-ETGTQC-NFNSANIGAKISNFTMIPKNETV-MAGYIVSTG 256

Query:   428 PLSVGMNANGLFYYSGGVIDL----NQRLYGTSIPYWIVKNS 465
             PL++  +A    +Y GGV D+    N   +G  I  +  KN+
Sbjct:   257 PLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKNT 298

GO:0006972 "hyperosmotic response" evidence=IEP

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

FB|FBgn0013770 Cp1 "Cysteine proteinase-1" [Drosophila melanogaster (taxid:7227)]

 Score = 384 (140.2 bits), Expect = 4.9e-35, P = 4.9e-35
 Identities = 107/297 (36%), Positives = 149/297 (50%)

Query:   200 HDKVYSSVEDLLRRHENFVTNVEK-AEDYQSEDSGTAVF--GVNKFFDLSESDLQQL-TG 255
             H K Y    +   R + F  N  K A+  Q    G   F   VNK+ DL   + +QL  G
Sbjct:    66 HRKNYQDETEERFRLKIFNENKHKIAKHNQRFAEGKVSFKLAVNKYADLLHHEFRQLMNG 125

Query:   256 LNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQG 315
              N   TL      L+A       D   +   F S  H   LP++ DWR +G ++ VK+QG
Sbjct:   126 FNY--TLHK---QLRA------ADESFKGVTFISPAHVT-LPKSVDWRTKGAVTAVKDQG 173

Query:   316 KCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS--NGGCNGGRMDDALQYIIDN 373
              C  CWAFS+ G +E  H  +   L  LS Q LVDC     N GCNGG MD+A +YI DN
Sbjct:   174 HCGSCWAFSSTGALEGQHFRKSGVLVSLSEQNLVDCSTKYGNNGCNGGLMDNAFRYIKDN 233

Query:   374 GGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGM 433
             GG+ ++++YPY+A +    C              ++ IP G+E++M + VAT GP+SV +
Sbjct:   234 GGIDTEKSYPYEAIDDS--C-HFNKGTVGATDRGFTDIPQGDEKKMAEAVATVGPVSVAI 290

Query:   434 NAN--GLFYYSGGVIDLNQ----RL--------YGTSIP---YWIVKNSWGSDWGEK 473
             +A+     +YS GV +  Q     L        +GT      YW+VKNSWG+ WG+K
Sbjct:   291 DASHESFQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDESGEDYWLVKNSWGTTWGDK 347

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS;NAS

GO:0030163 "protein catabolic process" evidence=NAS

GO:0005764 "lysosome" evidence=NAS

GO:0048102 "autophagic cell death" evidence=IEP

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0006508 "proteolysis" evidence=IEA

GO:0045169 "fusome" evidence=IDA

TAIR|locus:2090614 AT3G19390 [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 4.4e-40, Sum P(2) = 4.4e-40
 Identities = 82/195 (42%), Positives = 116/195 (59%)

Query:   293 GDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCD 352
             GD LP+A DWRA+G ++ VK+QG C  CWAFSA+G VE ++ I+   L  LS Q+LVDCD
Sbjct:   126 GDSLPDAIDWRAKGAVNPVKDQGSCGSCWAFSAIGAVEGINQIKTGELISLSEQELVDCD 185

Query:   353 MS-NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRI 411
              S N GC GG MD A ++II+NGG+ +++ YPY A++    C              Y  +
Sbjct:   186 TSYNDGCGGGLMDYAFKFIIENGGIDTEEDYPYIATDVNV-CNSDKKNTRVVTIDGYEDV 244

Query:   412 PYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVI------DLNQRL----YGTS--I 457
             P  +E+ +KK +A + P+SV + A G  +  Y+ GV        L+  +    YG+    
Sbjct:   245 PQNDEKSLKKALANQ-PISVAIEAGGRAFQLYTSGVFTGTCGTSLDHGVVAVGYGSEGGQ 303

Query:   458 PYWIVKNSWGSDWGE 472
              YWIV+NSWGS+WGE
Sbjct:   304 DYWIVRNSWGSNWGE 318

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0000041 "transition metal ion transport" evidence=RCA

MGI|MGI:107341 Ctss "cathepsin S" [Mus musculus (taxid:10090)]

 Score = 397 (144.8 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 94/237 (39%), Positives = 134/237 (56%)

Query:   259 DSTLEDI---QPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQG 315
             D T E+I     +L+ P  S +T T    F+  S R    LP+  DWR +G +++VK QG
Sbjct:    90 DMTNEEILCRMGALRIPRQSPKTVT----FRSYSNR---TLPDTVDWREKGCVTEVKYQG 142

Query:   316 KCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCD----MSNGGCNGGRMDDALQYII 371
              C  CWAFSAVG +E    ++   L  LS Q LVDC       N GC GG M +A QYII
Sbjct:   143 SCGACWAFSAVGALEGQLKLKTGKLISLSAQNLVDCSNEEKYGNKGCGGGYMTEAFQYII 202

Query:   372 DNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSV 431
             DNGG+ +D +YPYKA++ +  C              Y ++P+G+E+ +K+ VAT+GP+SV
Sbjct:   203 DNGGIEADASYPYKATDEK--C-HYNSKNRAATCSRYIQLPFGDEDALKEAVATKGPVSV 259

Query:   432 GMNAN--GLFYYSGGVID-------LNQRL----YGT--SIPYWIVKNSWGSDWGEK 473
             G++A+    F+Y  GV D       +N  +    YGT     YW+VKNSWG ++G++
Sbjct:   260 GIDASHSSFFFYKSGVYDDPSCTGNVNHGVLVVGYGTLDGKDYWLVKNSWGLNFGDQ 316

GO:0005764 "lysosome" evidence=ISO;IDA

GO:0006508 "proteolysis" evidence=IDA

GO:0008152 "metabolic process" evidence=ISO

GO:0008233 "peptidase activity" evidence=IDA

GO:0008234 "cysteine-type peptidase activity" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0045453 "bone resorption" evidence=ISO

GO:0051930 "regulation of sensory perception of pain" evidence=ISO

TAIR|locus:2038588 AT2G27420 [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 1.7e-35, P = 1.7e-35
 Identities = 99/292 (33%), Positives = 145/292 (49%)

Query:   201 DKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQL-TGLNLD 259
             ++VYS   +   R   F  N+E  +++   +  T    +N+F DL++ + +   TGL + 
Sbjct:    43 NRVYSDETEKRNRFNIFKKNLEFVQNFNMNNKITYKVDINEFSDLTDEEFRATHTGLVVP 102

Query:   260 STLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCAC 319
               +  I     +  SS +       F++ ++    D  E+ DWR EG ++ VK QG+C  
Sbjct:   103 EAITRI-----STLSSGKNTVP---FRYGNV---SDNGESMDWRQEGAVTPVKYQGRCGG 151

Query:   320 CWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS-NGGCNGGRMDDALQYIIDNGGVVS 378
             CWAFSAV  VE +  I    L  LS QQL+DCD   N GC GG M  A +YII N G+ +
Sbjct:   152 CWAFSAVAAVEGITKITKGELVSLSEQQLLDCDRDYNQGCRGGIMSKAFEYIIKNQGITT 211

Query:   379 DQAYPYKASESERGCLXXXXXXXXXXXXX---YSRIPYGEEEEMKKWVATRGPLSVGMNA 435
             +  YPY+  ES++ C                 Y  +P   EE + + V+ + P+SVG+  
Sbjct:   212 EDNYPYQ--ESQQTCSSSTTLSSSFRAATISGYETVPMNNEEALLQAVSQQ-PVSVGIEG 268

Query:   436 NGLFY--YSGGVI------DLNQRL----YGTS---IPYWIVKNSWGSDWGE 472
              G  +  YSGGV       DL+  +    YG S     YW+VKNSWG  WGE
Sbjct:   269 TGAAFRHYSGGVFNGECGTDLHHAVTIVGYGMSEEGTKYWVVKNSWGETWGE 320

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	655
pfam00112	213	pfam00112, Peptidase_C1, Papain family cysteine pr	2e-72
cd02248	210	cd02248, Peptidase_C1A, Peptidase C1A subfamily (M	5e-69
smart00645	175	smart00645, Pept_C1, Papain family cysteine protea	1e-53
pfam00112	213	pfam00112, Peptidase_C1, Papain family cysteine pr	1e-48
cd02248	210	cd02248, Peptidase_C1A, Peptidase C1A subfamily (M	3e-47
PTZ00203	348	PTZ00203, PTZ00203, cathepsin L protease; Provisio	6e-46
PTZ00021	489	PTZ00021, PTZ00021, falcipain-2; Provisional	4e-41
PTZ00200	448	PTZ00200, PTZ00200, cysteine proteinase; Provision	2e-37
cd02620	236	cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro	4e-33
smart00645	175	smart00645, Pept_C1, Papain family cysteine protea	1e-30
cd02621	243	cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; al	3e-26
cd02619	223	cd02619, Peptidase_C1, C1 Peptidase family (MEROPS	5e-25
cd02621	243	cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; al	6e-25
PTZ00203	348	PTZ00203, PTZ00203, cathepsin L protease; Provisio	1e-24
PTZ00021	489	PTZ00021, PTZ00021, falcipain-2; Provisional	1e-24
cd02620	236	cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro	2e-24
cd02698	239	cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; th	3e-23
PTZ00200	448	PTZ00200, PTZ00200, cysteine proteinase; Provision	4e-22
cd02619	223	cd02619, Peptidase_C1, C1 Peptidase family (MEROPS	6e-21
smart00645	175	smart00645, Pept_C1, Papain family cysteine protea	7e-21
cd02248	210	cd02248, Peptidase_C1A, Peptidase C1A subfamily (M	2e-19
pfam00112	213	pfam00112, Peptidase_C1, Papain family cysteine pr	6e-19
cd02698	239	cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; th	2e-18
PTZ00021	489	PTZ00021, PTZ00021, falcipain-2; Provisional	6e-16
PTZ00203	348	PTZ00203, PTZ00203, cathepsin L protease; Provisio	9e-16
PTZ00200	448	PTZ00200, PTZ00200, cysteine proteinase; Provision	2e-13
smart00848	57	smart00848, Inhibitor_I29, Cathepsin propeptide in	1e-11
pfam08246	58	pfam08246, Inhibitor_I29, Cathepsin propeptide inh	2e-10
smart00848	57	smart00848, Inhibitor_I29, Cathepsin propeptide in	1e-09
PTZ00049	693	PTZ00049, PTZ00049, cathepsin C-like protein; Prov	9e-09
COG4870	372	COG4870, COG4870, Cysteine protease [Posttranslati	3e-08
pfam08246	58	pfam08246, Inhibitor_I29, Cathepsin propeptide inh	7e-08
PTZ00364	548	PTZ00364, PTZ00364, dipeptidyl-peptidase I precurs	1e-07
PTZ00462	1004	PTZ00462, PTZ00462, Serine-repeat antigen protein;	7e-07
cd02620	236	cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro	4e-06
PTZ00364	548	PTZ00364, PTZ00364, dipeptidyl-peptidase I precurs	4e-06
COG4870	372	COG4870, COG4870, Cysteine protease [Posttranslati	6e-05
COG4870	372	COG4870, COG4870, Cysteine protease [Posttranslati	1e-04
cd02621	243	cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; al	4e-04
cd02619	223	cd02619, Peptidase_C1, C1 Peptidase family (MEROPS	5e-04

>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease

 Score =  232 bits (593), Expect = 2e-72
 Identities = 86/193 (44%), Positives = 114/193 (59%), Gaps = 17/193 (8%)

Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           LPE+FDWR +G ++ VK+QG+C  CWAFSAVG +E  + I+   L  LS QQLVDCD  N
Sbjct: 1   LPESFDWREKGAVTPVKDQGQCGSCWAFSAVGALEGRYCIKTGKLVSLSEQQLVDCDTGN 60

Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGE 415
            GCNGG  D+A +YI  NGG+V++  YPY A +    C   +      K+K Y  +PY +
Sbjct: 61  NGCNGGLPDNAFEYIKKNGGIVTESDYPYTAHDGT--CKFKKSNSKYAKIKGYGDVPYND 118

Query: 416 EEEMKKWVATRGPLSVGMNANGLF--YYSGGVID---LNQRL--------YGTS--IPYW 460
           EE ++  +A  GP+SV ++A       Y  GV      +  L        YGT   +PYW
Sbjct: 119 EEALQAALAKNGPVSVAIDAYEDDFQLYKSGVYKHTECSGELDHAVLIVGYGTENGVPYW 178

Query: 461 IVKNSWGSDWGEK 473
           IVKNSWG+DWGE 
Sbjct: 179 IVKNSWGTDWGEN 191

Length = 213

>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

 Score =  223 bits (570), Expect = 5e-69
 Identities = 83/193 (43%), Positives = 111/193 (57%), Gaps = 20/193 (10%)

Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCD-MSN 355
           PE+ DWR +G ++ VK+QG C  CWAFS VG +E  +AI+   L  LS QQLVDC    N
Sbjct: 1   PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTSGN 60

Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGE 415
            GCNGG  D+A +Y + NGG+ S+  YPY   +    C     +    K+  YS +P G+
Sbjct: 61  NGCNGGNPDNAFEY-VKNGGLASESDYPYTGKDGT--CKYNSSKV-GAKITGYSNVPPGD 116

Query: 416 EEEMKKWVATRGPLSVGMNANGLF-YYSGGVID----LNQRL--------YGTS--IPYW 460
           EE +K  +A  GP+SV ++A+  F +Y GG+       N  L        YGT   + YW
Sbjct: 117 EEALKAALANYGPVSVAIDASSSFQFYKGGIYSGPCCSNTNLNHAVLLVGYGTENGVDYW 176

Query: 461 IVKNSWGSDWGEK 473
           IVKNSWG+ WGEK
Sbjct: 177 IVKNSWGTSWGEK 189

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to hatch or to evade the host immune system. Mammalian CPs are primarily lysosomal enzymes with the exception of cathepsin W, which is retained in the endoplasmic reticulum. They are responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. In addition to its inhibitory role, the propeptide is required for proper folding of the newly synthesized enzyme and its stabilization in denaturing pH conditions. Residues within the propeptide region also play a role in the transport of the proenzyme to lysosomes or acidified vesicles. Also included in this subfamily are proteins classified as non-peptidase homologs, which lack peptidase activity or have missing active site residues. Length = 210

>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease

 Score =  181 bits (462), Expect = 1e-53
 Identities = 70/195 (35%), Positives = 92/195 (47%), Gaps = 60/195 (30%)

Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCD-MS 354
           LPE+FDWR +G ++ VK+QG+C  CWAFSA G +E  + I+   L  LS QQLVDC    
Sbjct: 1   LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSGGG 60

Query: 355 NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYG 414
           N GCNGG  D+A +YI  NGG+ ++  YPY  S                           
Sbjct: 61  NCGCNGGLPDNAFEYIKKNGGLETESCYPYTGS--------------------------- 93

Query: 415 EEEEMKKWVATRGPLSVGMNANGLFYYSGGVID----LNQRL--------YGTSI----P 458
                           V ++A+   +Y  G+ D     +  L        YGT +     
Sbjct: 94  ----------------VAIDASDFQFYKSGIYDHPGCGSGTLDHAVLIVGYGTEVENGKD 137

Query: 459 YWIVKNSWGSDWGEK 473
           YWIVKNSWG+DWGE 
Sbjct: 138 YWIVKNSWGTDWGEN 152

Length = 175

>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease

 Score =  168 bits (429), Expect = 1e-48
 Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 12/158 (7%)

Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEE 556
           KL  L+ ++LVDCD  N GCNGG  D+A +YI  NGG+V++  YPY A +    C   + 
Sbjct: 44  KLVSLSEQQLVDCDTGNNGCNGGLPDNAFEYIKKNGGIVTESDYPYTAHDGT--CKFKKS 101

Query: 557 EGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLF--YYSGGVIDLNQRLCNPK 614
                K+K Y  +PY +EE ++  +A  GP+SV ++A       Y  GV    +  C+ +
Sbjct: 102 NSKYAKIKGYGDVPYNDEEALQAALAKNGPVSVAIDAYEDDFQLYKSGVYKHTE--CSGE 159

Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
             +HA++IVGYG E        PYWIVKNSWG+DWGE 
Sbjct: 160 L-DHAVLIVGYGTENGV-----PYWIVKNSWGTDWGEN 191

Length = 213

>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

 Score =  165 bits (419), Expect = 3e-47
 Identities = 65/158 (41%), Positives = 91/158 (57%), Gaps = 13/158 (8%)

Query: 497 KLSRLATEKLVDCD-MSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGE 555
           KL  L+ ++LVDC    N GCNGG  D+A +Y+  NGG+ S+  YPY   +    C    
Sbjct: 43  KLVSLSEQQLVDCSTSGNNGCNGGNPDNAFEYV-KNGGLASESDYPYTGKDGT--CKYNS 99

Query: 556 EEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLF-YYSGGVIDLNQRLCNPK 614
            +    K+  YS +P G+EE +K  +A  GP+SV ++A+  F +Y GG+       C+  
Sbjct: 100 SKV-GAKITGYSNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGIYSGPC--CSNT 156

Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
             NHA+++VGYG E   D     YWIVKNSWG+ WGEK
Sbjct: 157 NLNHAVLLVGYGTENGVD-----YWIVKNSWGTSWGEK 189

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to hatch or to evade the host immune system. Mammalian CPs are primarily lysosomal enzymes with the exception of cathepsin W, which is retained in the endoplasmic reticulum. They are responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. In addition to its inhibitory role, the propeptide is required for proper folding of the newly synthesized enzyme and its stabilization in denaturing pH conditions. Residues within the propeptide region also play a role in the transport of the proenzyme to lysosomes or acidified vesicles. Also included in this subfamily are proteins classified as non-peptidase homologs, which lack peptidase activity or have missing active site residues. Length = 210

>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional

 Score =  166 bits (421), Expect = 6e-46
 Identities = 97/299 (32%), Positives = 149/299 (49%), Gaps = 47/299 (15%)

Query: 198 QHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDL--QQLTG 255
           + + + Y ++ +  +R  NF  N+E   ++Q+ +   A FG+ KFFDLSE++   + L G
Sbjct: 43  RTYQRAYGTLTEEQQRLANFERNLELMREHQARNP-HARFGITKFFDLSEAEFAARYLNG 101

Query: 256 LNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRH---GDDL---PEAFDWRAEGVIS 309
                          A F++        A Q     +     DL   P+A DWR +G ++
Sbjct: 102 --------------AAYFAA--------AKQHAGQHYRKARADLSAVPDAVDWREKGAVT 139

Query: 310 KVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQY 369
            VK QG C  CWAFSAVG +E+  A+ G+ L  LS QQLV CD  + GC GG M  A ++
Sbjct: 140 PVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDHVDNGCGGGLMLQAFEW 199

Query: 370 IIDN--GGVVSDQAYPYKASESERG-CLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATR 426
           ++ N  G V ++++YPY +   +   C    E     ++  Y  +    E  M  W+A  
Sbjct: 200 VLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSME-SSERVMAAWLAKN 258

Query: 427 GPLSVGMNANGLFYYSGGVI---DLNQRLYGT---------SIPYWIVKNSWGSDWGEK 473
           GP+S+ ++A+    Y  GV+      Q  +G           +PYW++KNSWG DWGEK
Sbjct: 259 GPISIAVDASSFMSYHSGVLTSCIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEK 317

Length = 348

>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional

 Score =  156 bits (396), Expect = 4e-41
 Identities = 96/308 (31%), Positives = 153/308 (49%), Gaps = 38/308 (12%)

Query: 191 NLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDL 250
           N   L ++ H K Y + +++ +R+ +FV N+ K   + ++++     G+N+F DLS  + 
Sbjct: 167 NSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEF 226

Query: 251 QQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDL--PEAFDWRAEGVI 308
           ++   L L  + +      ++P   N  D           +  D       +DWR    +
Sbjct: 227 KK-KYLTL-KSFDFKSNGKKSPRVINYDDV------IKKYKPKDATFDHAKYDWRLHNGV 278

Query: 309 SKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQ 368
           + VK+Q  C  CWAFS VGVVE+ +AI+ N L  LS Q+LVDC   N GC GG + +A +
Sbjct: 279 TPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVDCSFKNNGCYGGLIPNAFE 338

Query: 369 YIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGP 428
            +I+ GG+ S+  YPY  S++   C +   +  K K+K Y  IP   E++ K+ +   GP
Sbjct: 339 DMIELGGLCSEDDYPY-VSDTPELCNIDRCKE-KYKIKSYVSIP---EDKFKEAIRFLGP 393

Query: 429 LSVGMNANGLF-YYSGGVID------LNQRL----YGTSIP------------YWIVKNS 465
           +SV +  +  F +Y GG+ D       N  +    YG                Y+I+KNS
Sbjct: 394 ISVSIAVSDDFAFYKGGIFDGECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNS 453

Query: 466 WGSDWGEK 473
           WG  WGEK
Sbjct: 454 WGESWGEK 461

Length = 489

>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional

 Score =  144 bits (365), Expect = 2e-37
 Identities = 87/304 (28%), Positives = 140/304 (46%), Gaps = 49/304 (16%)

Query: 200 HDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLTGLNLD 259
           +++ +++  + L R   F  N  + + ++ ++       +NKF DL+E + ++L      
Sbjct: 133 YNRKHATHAERLNRFLTFRNNYLEVKSHKGDE--PYSKEINKFSDLTEEEFRKL------ 184

Query: 260 STLEDIQPSLQAPFSSNQTDT----EMRAFQFNSLRHGDDL-----------PEAFDWRA 304
                I+   ++  +S+  D             +L+   +             E  DWR 
Sbjct: 185 --FPVIKVPPKSNSTSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRR 242

Query: 305 EGVISKVKEQGK-CACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRM 363
              ++KVK+QG  C  CWAFS+VG VE+++ I  +   +LS Q+LV+CD  + GC+GG  
Sbjct: 243 ADAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYRDKSVDLSEQELVNCDTKSQGCSGGYP 302

Query: 364 DDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWV 423
           D AL+Y + N G+ S    PY A + +  C+V      KV +  Y  +  G++   K  V
Sbjct: 303 DTALEY-VKNKGLSSSSDVPYLAKDGK--CVVS--STKKVYIDSYL-VAKGKDVLNKSLV 356

Query: 424 ATRGPLSVGMNA-NGLFYYSGGVID------LNQR--LYG------TSIPYWIVKNSWGS 468
               P  V +     L  Y  GV +      LN    L G      T   YWI+KNSWG+
Sbjct: 357 I--SPTVVYIAVSRELLKYKSGVYNGECGKSLNHAVLLVGEGYDEKTKKRYWIIKNSWGT 414

Query: 469 DWGE 472
           DWGE
Sbjct: 415 DWGE 418

Length = 448

>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

 Score =  126 bits (319), Expect = 4e-33
 Identities = 68/218 (31%), Positives = 91/218 (41%), Gaps = 44/218 (20%)

Query: 297 PEAFDWRAE----GVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSL--TELSVQQLVD 350
           PE+FD R +      I ++++QG C  CWAFSAV        IQ N      LS Q L+ 
Sbjct: 1   PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLS 60

Query: 351 CDMSNG-GCNGGRMDDALQYIIDNGGVVSDQAYPYKASES-------------------- 389
           C    G GCNGG  D A +Y+   G VV+    PY                         
Sbjct: 61  CCSGCGDGCNGGYPDAAWKYLTTTG-VVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKC 119

Query: 390 ERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNAN-GLFYYSGGV--- 445
           + GC    EE  K K K    +P  +E ++ K + T GP+           YY  GV   
Sbjct: 120 QDGCEKTYEE-DKHKGKSAYSVP-SDETDIMKEIMTNGPVQAAFTVYEDFLYYKSGVYQH 177

Query: 446 IDLNQ------RL--YGTS--IPYWIVKNSWGSDWGEK 473
               Q      ++  +G    +PYW+  NSWG+DWGE 
Sbjct: 178 TSGKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWGEN 215

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane antibody-mediated interstitial nephritis. It plays a role in renal tubulogenesis and is defective in hereditary tubulointerstitial disorders. TIN-Ag is exclusively expressed in kidney tissues. . Length = 236

>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease

 Score =  118 bits (297), Expect = 1e-30
 Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 49/157 (31%)

Query: 497 KLSRLATEKLVDCD-MSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGE 555
           KL  L+ ++LVDC    N GCNGG  D+A +YI  NGG+ ++  YPY  S          
Sbjct: 44  KLVSLSEQQLVDCSGGGNCGCNGGLPDNAFEYIKKNGGLETESCYPYTGS---------- 93

Query: 556 EEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKA 615
                                            V ++A+   +Y  G+ D     C    
Sbjct: 94  ---------------------------------VAIDASDFQFYKSGIYD--HPGCGSGT 118

Query: 616 QNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
            +HA++IVGYG E +       YWIVKNSWG+DWGE 
Sbjct: 119 LDHAVLIVGYGTEVENGK---DYWIVKNSWGTDWGEN 152

Length = 175

>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

 Score =  107 bits (269), Expect = 3e-26
 Identities = 64/221 (28%), Positives = 94/221 (42%), Gaps = 45/221 (20%)

Query: 296 LPEAFDWR----AEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSL------TELSV 345
           LP++FDW         +S V+ QG C  C+AF++V  +EA   I  N          LS 
Sbjct: 1   LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSP 60

Query: 346 QQLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKV 405
           Q ++ C   + GC+GG      ++  D  G+V++  +PY A + +R C     E  +   
Sbjct: 61  QHVLSCSQYSQGCDGGFPFLVGKFAEDF-GIVTEDYFPYTA-DDDRPCKASPSECRRYYF 118

Query: 406 KEYSRIP--YG--EEEEMKKWVATRGPLSVGMNAN--GLFYYSG--GVIDLNQRL----- 452
            +Y+ +   YG   E+EMK  +   GP+ V         FY  G     D ++       
Sbjct: 119 SDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHHTDNDEVSDGDND 178

Query: 453 ----------------YGT----SIPYWIVKNSWGSDWGEK 473
                           +G        YWIVKNSWGS WGEK
Sbjct: 179 NFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEK 219

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are associated with Papillon-Lefevre and Haim-Munk syndromes, rare diseases characterized by hyperkeratosis and early-onset periodontitis. Cathepsin C is widely expressed in many tissues with high levels in lung, kidney and placenta. It is also highly expressed in cytotoxic lymphocytes and mature myeloid cells. Length = 243

>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

 Score =  103 bits (258), Expect = 5e-25
 Identities = 57/204 (27%), Positives = 87/204 (42%), Gaps = 31/204 (15%)

Query: 300 FDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGN--SLTELSVQQLVDCD----- 352
            D R    ++ VK QG    CWAF++   +E+ + I+G      +LS Q L  C      
Sbjct: 2   VDLR-PLRLTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECL 60

Query: 353 MSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKA-SESERGCLVGEEEGFKVKVKEYSRI 411
             NG C+GG    AL  ++   G+  ++ YPY A S+ E           KVK+K+Y R+
Sbjct: 61  GINGSCDGGGPLSALLKLVALKGIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRV 120

Query: 412 PYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLYGT---------------- 455
                E++K+ +A  GP+  G +    F      I   + +Y                  
Sbjct: 121 LKNNIEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGY 180

Query: 456 ------SIPYWIVKNSWGSDWGEK 473
                     +IVKNSWG+DWG+ 
Sbjct: 181 DDNYVEGKGAFIVKNSWGTDWGDN 204

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel structure with the active sites imbedded in the central channel. Some members of the C1 family are proteins classified as non-peptidase homologs which lack peptidase activity or have missing active site residues. Length = 223

>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

 Score =  104 bits (260), Expect = 6e-25
 Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 20/168 (11%)

Query: 500 RLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGF 559
            L+ + ++ C   + GC+GG      ++  D G +V++  +PY A + +R C     E  
Sbjct: 57  ILSPQHVLSCSQYSQGCDGGFPFLVGKFAEDFG-IVTEDYFPYTA-DDDRPCKASPSECR 114

Query: 560 KVKVKEYSRIP--YG--EEEEMKKWVATRGPLSVGMNAN--GLFYYSG--GVIDLNQRLC 611
           +    +Y+ +   YG   E+EMK  +   GP+ V         FY  G     D ++   
Sbjct: 115 RYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHHTDNDEVSD 174

Query: 612 NPKAQ-------NHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
                       NHA+++VG+GE+E K      YWIVKNSWGS WGEK
Sbjct: 175 GDNDNFNPFELTNHAVLLVGWGEDEIKGE---KYWIVKNSWGSSWGEK 219

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are associated with Papillon-Lefevre and Haim-Munk syndromes, rare diseases characterized by hyperkeratosis and early-onset periodontitis. Cathepsin C is widely expressed in many tissues with high levels in lung, kidney and placenta. It is also highly expressed in cytotoxic lymphocytes and mature myeloid cells. Length = 243

>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional

 Score =  105 bits (263), Expect = 1e-24
 Identities = 54/159 (33%), Positives = 85/159 (53%), Gaps = 13/159 (8%)

Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDN--GGVVSDQAYPYKASESERG-CLV 553
           KL RL+ ++LV CD  + GC GG M  A ++++ N  G V ++++YPY +   +   C  
Sbjct: 169 KLVRLSEQQLVSCDHVDNGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSN 228

Query: 554 GEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNP 613
             E     ++  Y  +    E  M  W+A  GP+S+ ++A+    Y  GV+      C  
Sbjct: 229 SSELAPGARIDGYVSME-SSERVMAAWLAKNGPISIAVDASSFMSYHSGVLTS----CIG 283

Query: 614 KAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           +  NH +++VGY       G  +PYW++KNSWG DWGEK
Sbjct: 284 EQLNHGVLLVGY----NMTG-EVPYWVIKNSWGEDWGEK 317

Length = 348

>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional

 Score =  107 bits (269), Expect = 1e-24
 Identities = 60/162 (37%), Positives = 92/162 (56%), Gaps = 15/162 (9%)

Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEE 556
           +L  L+ ++LVDC   N GC GG + +A + +I+ GG+ S+  YPY  S++   C +   
Sbjct: 309 ELVSLSEQELVDCSFKNNGCYGGLIPNAFEDMIELGGLCSEDDYPY-VSDTPELCNIDRC 367

Query: 557 EGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLF-YYSGGVIDLNQRLCNPKA 615
           +  K K+K Y  IP   E++ K+ +   GP+SV +  +  F +Y GG+ D     C  + 
Sbjct: 368 KE-KYKIKSYVSIP---EDKFKEAIRFLGPISVSIAVSDDFAFYKGGIFDGE---CG-EE 419

Query: 616 QNHALIIVGYGEEEKKDGTSIP-----YWIVKNSWGSDWGEK 652
            NHA+I+VGYG EE  +  +       Y+I+KNSWG  WGEK
Sbjct: 420 PNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEK 461

Length = 489

>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

 Score =  101 bits (255), Expect = 2e-24
 Identities = 52/175 (29%), Positives = 72/175 (41%), Gaps = 33/175 (18%)

Query: 500 RLATEKLVDCDMSNG-GCNGGRMDDALQYIIDNGGVVSDQAYPYKASES----------- 547
            L+ + L+ C    G GCNGG  D A +Y+   G VV+    PY                
Sbjct: 52  LLSAQDLLSCCSGCGDGCNGGYPDAAWKYLTTTG-VVTGGCQPYTIPPCGHHPEGPPPCC 110

Query: 548 ---------ERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNAN-GLF 597
                    + GC    EE  K K K    +P  +E ++ K + T GP+           
Sbjct: 111 GTPYCTPKCQDGCEKTYEE-DKHKGKSAYSVP-SDETDIMKEIMTNGPVQAAFTVYEDFL 168

Query: 598 YYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           YY  GV    Q     +   HA+ I+G+G E       +PYW+  NSWG+DWGE 
Sbjct: 169 YYKSGVY---QHTSGKQLGGHAVKIIGWGVENG-----VPYWLAANSWGTDWGEN 215

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane antibody-mediated interstitial nephritis. It plays a role in renal tubulogenesis and is defective in hereditary tubulointerstitial disorders. TIN-Ag is exclusively expressed in kidney tissues. . Length = 236

>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

 Score = 99.0 bits (247), Expect = 3e-23
 Identities = 58/215 (26%), Positives = 88/215 (40%), Gaps = 42/215 (19%)

Query: 296 LPEAFDWR-AEGV--ISKVKEQ---GKCACCWAFSAVGVVEAMHAIQGN---SLTELSVQ 346
           LP+++DWR   GV  +S  + Q     C  CWA  +   +     I          LSVQ
Sbjct: 1   LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQ 60

Query: 347 QLVDCDMSNGG-CNGGRMDDALQYIIDNGGVVSDQAYPYKASESE-------RGCLVGEE 398
            ++DC  + GG C+GG      +Y   +G +  +   PY+A + E         C    E
Sbjct: 61  VVIDC--AGGGSCHGGDPGGVYEYAHKHG-IPDETCNPYQAKDGECNPFNRCGTCNPFGE 117

Query: 399 -----EGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY-YSGGVIDLNQRL 452
                      V +Y  +     ++M   +  RGP+S G+ A      Y+GGV     + 
Sbjct: 118 CFAIKNYTLYFVSDYGSV--SGRDKMMAEIYARGPISCGIMATEALENYTGGVYKEYVQD 175

Query: 453 -----------YGT---SIPYWIVKNSWGSDWGEK 473
                      +G     + YWIV+NSWG  WGE+
Sbjct: 176 PLINHIISVAGWGVDENGVEYWIVRNSWGEPWGER 210

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response. Length = 239

>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional

 Score = 99.4 bits (248), Expect = 4e-22
 Identities = 63/186 (33%), Positives = 89/186 (47%), Gaps = 25/186 (13%)

Query: 467 GSDWGEKVEDKVGSSGNRTRDLELTGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQ 526
           GS W       V S     RD  +          L+ ++LV+CD  + GC+GG  D AL+
Sbjct: 257 GSCWAFSSVGSVESLYKIYRDKSV---------DLSEQELVNCDTKSQGCSGGYPDTALE 307

Query: 527 YIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGP 586
           Y + N G+ S    PY A + +  C+V      KV +  Y  +  G++   K  V    P
Sbjct: 308 Y-VKNKGLSSSSDVPYLAKDGK--CVVS--STKKVYIDSYL-VAKGKDVLNKSLVI--SP 359

Query: 587 LSVGMNA-NGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSW 645
             V +     L  Y  GV +     C  K+ NHA+++VG G +EK   T   YWI+KNSW
Sbjct: 360 TVVYIAVSRELLKYKSGVYNGE---CG-KSLNHAVLLVGEGYDEK---TKKRYWIIKNSW 412

Query: 646 GSDWGE 651
           G+DWGE
Sbjct: 413 GTDWGE 418

Length = 448

>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

 Score = 91.4 bits (227), Expect = 6e-21
 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 8/149 (5%)

Query: 509 CDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKA-SESERGCLVGEEEGFKVKVKEYS 567
           C   NG C+GG    AL  ++   G+  ++ YPY A S+ E           KVK+K+Y 
Sbjct: 59  CLGINGSCDGGGPLSALLKLVALKGIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYR 118

Query: 568 RIPYGEEEEMKKWVATRGPLSVGMNA-NGLFYYSGGVIDLNQRLCNPKAQ---NHALIIV 623
           R+     E++K+ +A  GP+  G +  +G      G+I         +      HA++IV
Sbjct: 119 RVLKNNIEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIV 178

Query: 624 GYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           GY +   +       +IVKNSWG+DWG+ 
Sbjct: 179 GYDDNYVEGK---GAFIVKNSWGTDWGDN 204

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel structure with the active sites imbedded in the central channel. Some members of the C1 family are proteins classified as non-peptidase homologs which lack peptidase activity or have missing active site residues. Length = 223

>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease

 Score = 89.9 bits (224), Expect = 7e-21
 Identities = 26/52 (50%), Positives = 35/52 (67%)

Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
           LPE+FDWR +G ++ VK+QG+C  CWAFSA G +E  + I+   L  LS Q 
Sbjct: 1   LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQ 52

Length = 175

>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

 Score = 86.9 bits (216), Expect = 2e-19
 Identities = 25/50 (50%), Positives = 33/50 (66%)

Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
           PE+ DWR +G ++ VK+QG C  CWAFS VG +E  +AI+   L  LS Q
Sbjct: 1   PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQ 50

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to hatch or to evade the host immune system. Mammalian CPs are primarily lysosomal enzymes with the exception of cathepsin W, which is retained in the endoplasmic reticulum. They are responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. In addition to its inhibitory role, the propeptide is required for proper folding of the newly synthesized enzyme and its stabilization in denaturing pH conditions. Residues within the propeptide region also play a role in the transport of the proenzyme to lysosomes or acidified vesicles. Also included in this subfamily are proteins classified as non-peptidase homologs, which lack peptidase activity or have missing active site residues. Length = 210

>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease

 Score = 85.7 bits (213), Expect = 6e-19
 Identities = 27/52 (51%), Positives = 36/52 (69%)

Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
           LPE+FDWR +G ++ VK+QG+C  CWAFSAVG +E  + I+   L  LS Q 
Sbjct: 1   LPESFDWREKGAVTPVKDQGQCGSCWAFSAVGALEGRYCIKTGKLVSLSEQQ 52

Length = 213

>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

 Score = 84.8 bits (210), Expect = 2e-18
 Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 26/166 (15%)

Query: 501 LATEKLVDCDMSNGG-CNGGRMDDALQYIIDNGGVVSDQAYPYKASESE-------RGCL 552
           L+ + ++DC  + GG C+GG      +Y   +G +  +   PY+A + E         C 
Sbjct: 57  LSVQVVIDC--AGGGSCHGGDPGGVYEYAHKHG-IPDETCNPYQAKDGECNPFNRCGTCN 113

Query: 553 VGEE-----EGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY-YSGGVIDL 606
              E           V +Y  +     ++M   +  RGP+S G+ A      Y+GGV   
Sbjct: 114 PFGECFAIKNYTLYFVSDYGSV--SGRDKMMAEIYARGPISCGIMATEALENYTGGVYKE 171

Query: 607 NQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
             +       NH + + G+G +E      + YWIV+NSWG  WGE+
Sbjct: 172 YVQDPLI---NHIISVAGWGVDENG----VEYWIVRNSWGEPWGER 210

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response. Length = 239

>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional

 Score = 80.6 bits (199), Expect = 6e-16
 Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 12/175 (6%)

Query: 28  ESNIFQTRGYLNS--PVTRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSG 85
             N   ++  + +   V  F  F+++H K Y + +++ +R+ +FV N+ K   +  +++ 
Sbjct: 150 LINFADSKFLMTNLENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENV 209

Query: 86  TAVFEVNKFFDLSDSDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHG 145
                +N+F DLS  + ++   L L  + +      ++P   N  D           +  
Sbjct: 210 LYKKGMNRFGDLSFEEFKK-KYLTL-KSFDFKSNGKKSPRVINYDDV------IKKYKPK 261

Query: 146 DDL--PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
           D       +DWR    ++ VK+Q  C  CWAFS VGVVE+ +AI+ N L  LS Q
Sbjct: 262 DATFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQ 316

Length = 489

>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional

 Score = 79.0 bits (194), Expect = 9e-16
 Identities = 54/172 (31%), Positives = 82/172 (47%), Gaps = 32/172 (18%)

Query: 37  YLNSPVTR-FLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSGTAVFEVNKFF 95
           Y+ +P    F  F R + + Y ++ +  +R  NF  N+E   ++Q  +   A F + KFF
Sbjct: 29  YVGTPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARNP-HARFGITKFF 87

Query: 96  DLSDSDL--QQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRH---GDDL-- 148
           DLS+++   + L G               A F++        A Q     +     DL  
Sbjct: 88  DLSEAEFAARYLNG--------------AAYFAA--------AKQHAGQHYRKARADLSA 125

Query: 149 -PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
            P+A DWR +G ++ VK QG C  CWAFSAVG +E+  A+ G+ L  LS Q 
Sbjct: 126 VPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQ 177

Length = 348

>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional

 Score = 72.8 bits (179), Expect = 2e-13
 Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 26/171 (15%)

Query: 45  FLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSGTAVFEVNKFFDLSDSDLQQ 104
           F  F + +++ +++  + L R   F  N  + +    +       E+NKF DL++ + ++
Sbjct: 126 FEEFNKKYNRKHATHAERLNRFLTFRNNYLEVK--SHKGDEPYSKEINKFSDLTEEEFRK 183

Query: 105 LTGLNLDSTLEDIQPSLQAPFSSNQTDT----EMRAFQFNSLRHGDDL-----------P 149
           L           I+   ++  +S+  D             +L+   +             
Sbjct: 184 L--------FPVIKVPPKSNSTSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITG 235

Query: 150 EAFDWRAEGVISKVKEQGK-CACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
           E  DWR    ++KVK+QG  C  CWAFS+VG VE+++ I  +   +LS Q 
Sbjct: 236 EGLDWRRADAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYRDKSVDLSEQE 286

Length = 448

>gnl|CDD|214853 smart00848, Inhibitor_I29, Cathepsin propeptide inhibitor domain (I29)

 Score = 59.9 bits (146), Expect = 1e-11
 Identities = 18/55 (32%), Positives = 30/55 (54%)

Query: 45 FLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSGTAVFEVNKFFDLSD 99
          F  + + H K YSS E+  RR   F  N++K E++ ++   +    VN+F DL+ 
Sbjct: 1  FEQWKKKHGKSYSSEEEEARRFAIFKENLKKIEEHNKKYEHSYKLGVNQFSDLTP 55

This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Length = 57

>gnl|CDD|219764 pfam08246, Inhibitor_I29, Cathepsin propeptide inhibitor domain (I29)

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 15/58 (25%), Positives = 32/58 (55%)

Query: 45  FLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSGTAVFEVNKFFDLSDSDL 102
           F ++ + + K Y S E+ L R + F  N+   E++ ++ + +    +N+F DL+D + 
Sbjct: 1   FEDWKKKYGKSYYSEEEELYRFQIFKENLRFIEEHNKKGNVSYTLGLNQFADLTDEEF 58

This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Length = 58

>gnl|CDD|214853 smart00848, Inhibitor_I29, Cathepsin propeptide inhibitor domain (I29)

 Score = 54.2 bits (131), Expect = 1e-09
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 198 QHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSE 247
           + H K YSS E+  RR   F  N++K E++  +   +   GVN+F DL+ 
Sbjct: 6   KKHGKSYSSEEEEARRFAIFKENLKKIEEHNKKYEHSYKLGVNQFSDLTP 55

This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Length = 57

>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional

 Score = 58.4 bits (141), Expect = 9e-09
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 20/96 (20%)

Query: 574 EEEMKKWVATRGPLSVGMNANGLFY-YSGGVIDLNQ----RLCN---PKAQ--------- 616
           E+ M   +   GP+     A+  FY Y+ GV  +      R C    PK           
Sbjct: 557 EKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGWE 616

Query: 617 --NHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
             NHA+++VG+GEEE  +G    YWI +NSWG +WG
Sbjct: 617 KVNHAIVLVGWGEEEI-NGKLYKYWIGRNSWGKNWG 651

Length = 693

>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 56.0 bits (135), Expect = 3e-08
 Identities = 61/281 (21%), Positives = 87/281 (30%), Gaps = 41/281 (14%)

Query: 228 QSEDSGTAVFGVNKFFDLSESDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQF 287
           Q       +       +L+   +        DS L     SL+    + Q    +     
Sbjct: 31  QLVLLRDKLSTSGIIIELAPKLIDFSEPEEKDSLLPVSLDSLEDCSPTGQVPDPVDLGSC 90

Query: 288 NSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQ----GNSLTEL 343
            +L     LP  FD R EG +S VK+QG    CWAF+    +E  +         S   +
Sbjct: 91  TALNASASLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLE-SYLNPESAWDFSENNM 149

Query: 344 SVQQLVDC--DMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASE--SERGCLVGE-- 397
                V           +GG  D +  Y+ +  G V +   PY  +   S     V +  
Sbjct: 150 KNLLGVPYEKGFDYTSNDGGNADMSAAYLTEWSGPVYETDDPYSENSYFSPTNLPVTKHV 209

Query: 398 -EEGFKVKVKEY---SRIP-----YGEEEEMKKWVATR------GPLSVGMNANGLFYYS 442
            E       K+Y     I      YG         AT           V    N      
Sbjct: 210 QEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDATNSLGICIPYPYVDSGENW----- 264

Query: 443 G------GVIDLNQRLYGTSIPY----WIVKNSWGSDWGEK 473
           G      G  D          P     +I+KNSWG++WGE 
Sbjct: 265 GHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGEN 305

Length = 372

>gnl|CDD|219764 pfam08246, Inhibitor_I29, Cathepsin propeptide inhibitor domain (I29)

 Score = 49.2 bits (118), Expect = 7e-08
 Identities = 14/54 (25%), Positives = 29/54 (53%)

Query: 197 VQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDL 250
            + + K Y S E+ L R + F  N+   E++  + + +   G+N+F DL++ + 
Sbjct: 5   KKKYGKSYYSEEEELYRFQIFKENLRFIEEHNKKGNVSYTLGLNQFADLTDEEF 58

This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Length = 58

>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 49/236 (20%), Positives = 79/236 (33%), Gaps = 54/236 (22%)

Query: 289 SLRHGDDLPEAFDWRAEGVISKVKE---QG---KCACCWAFSAVGVVEAMHAIQGN---- 338
           S + GD  P A+ W   G  S +           C   +  +A+  + A   +  N    
Sbjct: 198 SHQLGDPPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDP 257

Query: 339 --SLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAY-PYKASESERGCLV 395
               T LS + ++DC     GC GG  ++  ++    G + +D  Y PY + +       
Sbjct: 258 LGQQTFLSARHVLDCSQYGQGCAGGFPEEVGKFAETFGILTTDSYYIPYDSGDGVERACK 317

Query: 396 GEEEGFKVKVKEYSRIP--YG---EEEEMKKWVATRGPLSVGMNANGLFY---------- 440
                 +     Y  +   YG   + +E+   +   GP+   + AN  +Y          
Sbjct: 318 TRRPSRRYYFTNYGPLGGYYGAVTDPDEIIWEIYRHGPVPASVYANSDWYNCDENSTEDV 377

Query: 441 -------YSGGVIDLNQRLY--------------GT---SIPYWIVKNSWGS--DW 470
                  YS    D   R Y              GT      YW+V + WGS   W
Sbjct: 378 RYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSW 433

Length = 548

>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional

 Score = 52.4 bits (125), Expect = 7e-07
 Identities = 20/45 (44%), Positives = 26/45 (57%)

Query: 608 QRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           Q LC     +HA+ IVGYG     +     YWIV+NSWG  WG++
Sbjct: 713 QNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDE 757

Length = 1004

>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 149 PEAFDWRAE----GVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNL--TELSVQH 199
           PE+FD R +      I ++++QG C  CWAFSAV        IQ N      LS Q 
Sbjct: 1   PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQD 57

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane antibody-mediated interstitial nephritis. It plays a role in renal tubulogenesis and is defective in hereditary tubulointerstitial disorders. TIN-Ag is exclusively expressed in kidney tissues. . Length = 236

>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional

 Score = 49.9 bits (119), Expect = 4e-06
 Identities = 35/176 (19%), Positives = 65/176 (36%), Gaps = 29/176 (16%)

Query: 499 SRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAY-PYKASESERGCLVGEEE 557
           + L+   ++DC     GC GG  ++  ++    G + +D  Y PY + +           
Sbjct: 262 TFLSARHVLDCSQYGQGCAGGFPEEVGKFAETFGILTTDSYYIPYDSGDGVERACKTRRP 321

Query: 558 GFKVKVKEYSRIP--YG---EEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCN 612
             +     Y  +   YG   + +E+   +   GP+   + AN  +Y        + R  +
Sbjct: 322 SRRYYFTNYGPLGGYYGAVTDPDEIIWEIYRHGPVPASVYANSDWYNCDENSTEDVRYVS 381

Query: 613 PKAQ-----------------NHALIIVGYGEEEKKDGTSIPYWIVKNSWGS--DW 649
                                NH ++I+G+G +E        YW+V + WGS   W
Sbjct: 382 LDDYSTASADRPLRHYFASNVNHTVLIIGWGTDE----NGGDYWLVLDPWGSRRSW 433

Length = 548

>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 45.6 bits (108), Expect = 6e-05
 Identities = 34/159 (21%), Positives = 55/159 (34%), Gaps = 1/159 (0%)

Query: 96  DLSDSDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWR 155
           +L+   +        DS L     SL+    + Q    +      +L     LP  FD R
Sbjct: 47  ELAPKLIDFSEPEEKDSLLPVSLDSLEDCSPTGQVPDPVDLGSCTALNASASLPSYFDRR 106

Query: 156 AEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHHDKVYSSVEDLLRRHE 215
            EG +S VK+QG    CWAF+    +E  +    +          + +    E       
Sbjct: 107 DEGKVSPVKDQGSGGSCWAFATTRSLE-SYLNPESAWDFSENNMKNLLGVPYEKGFDYTS 165

Query: 216 NFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLT 254
           N   N + +  Y +E SG      + + + S      L 
Sbjct: 166 NDGGNADMSAAYLTEWSGPVYETDDPYSENSYFSPTNLP 204

Length = 372

>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)

Query: 617 NHALIIVGYGEEEKKDGT-SIPY----WIVKNSWGSDWGEK 652
            HA++IVGY +    +     P     +I+KNSWG++WGE 
Sbjct: 265 GHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGEN 305

Length = 372

>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 10/62 (16%)

Query: 148 LPEAFDWR----AEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNL------TELSV 197
           LP++FDW         +S V+ QG C  C+AF++V  +EA   I  N          LS 
Sbjct: 1   LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSP 60

Query: 198 QH 199
           QH
Sbjct: 61  QH 62

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are associated with Papillon-Lefevre and Haim-Munk syndromes, rare diseases characterized by hyperkeratosis and early-onset periodontitis. Cathepsin C is widely expressed in many tissues with high levels in lung, kidney and placenta. It is also highly expressed in cytotoxic lymphocytes and mature myeloid cells. Length = 243

>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 152 FDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNN--LTELSVQHH 200
            D R    ++ VK QG    CWAF++   +E+ + I+G      +LS Q+ 
Sbjct: 2   VDLR-PLRLTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYL 51

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel structure with the active sites imbedded in the central channel. Some members of the C1 family are proteins classified as non-peptidase homologs which lack peptidase activity or have missing active site residues. Length = 223

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	655
KOG1542|consensus	372		100.0
PTZ00203	348	cathepsin L protease; Provisional	100.0
PTZ00021	489	falcipain-2; Provisional	100.0
PTZ00200	448	cysteine proteinase; Provisional	100.0
KOG1543|consensus	325		100.0
cd02621	243	Peptidase_C1A_CathepsinC Cathepsin C; also known a	100.0
cd02620	236	Peptidase_C1A_CathepsinB Cathepsin B group; compos	100.0
cd02698	239	Peptidase_C1A_CathepsinX Cathepsin X; the only pap	100.0
cd02248	210	Peptidase_C1A Peptidase C1A subfamily (MEROPS data	100.0
PTZ00364	548	dipeptidyl-peptidase I precursor; Provisional	100.0
PTZ00049	693	cathepsin C-like protein; Provisional	100.0
PF00112	219	Peptidase_C1: Papain family cysteine protease This	100.0
smart00645	174	Pept_C1 Papain family cysteine protease.	100.0
cd02619	223	Peptidase_C1 C1 Peptidase family (MEROPS database	100.0
PTZ00462	1004	Serine-repeat antigen protein; Provisional	100.0
KOG1542|consensus	372		100.0
KOG1544|consensus	470		100.0
PTZ00203	348	cathepsin L protease; Provisional	99.98
cd02620	236	Peptidase_C1A_CathepsinB Cathepsin B group; compos	99.97
cd02698	239	Peptidase_C1A_CathepsinX Cathepsin X; the only pap	99.97
cd02621	243	Peptidase_C1A_CathepsinC Cathepsin C; also known a	99.97
cd02248	210	Peptidase_C1A Peptidase C1A subfamily (MEROPS data	99.97
PTZ00021	489	falcipain-2; Provisional	99.97
KOG1543|consensus	325		99.96
PTZ00200	448	cysteine proteinase; Provisional	99.96
PTZ00049	693	cathepsin C-like protein; Provisional	99.95
PF00112	219	Peptidase_C1: Papain family cysteine protease This	99.95
PTZ00364	548	dipeptidyl-peptidase I precursor; Provisional	99.95
cd02619	223	Peptidase_C1 C1 Peptidase family (MEROPS database	99.94
PTZ00462	1004	Serine-repeat antigen protein; Provisional	99.94
KOG1544|consensus	470		99.93
COG4870	372	Cysteine protease [Posttranslational modification,	99.91
smart00645	174	Pept_C1 Papain family cysteine protease.	99.9
cd00585	437	Peptidase_C1B Peptidase C1B subfamily (MEROPS data	99.89
PF03051	438	Peptidase_C1_2: Peptidase C1-like family This fami	99.75
COG4870	372	Cysteine protease [Posttranslational modification,	99.73
PF08246	58	Inhibitor_I29: Cathepsin propeptide inhibitor doma	99.72
smart00848	57	Inhibitor_I29 Cathepsin propeptide inhibitor domai	99.56
COG3579	444	PepC Aminopeptidase C [Amino acid transport and me	99.41
PF08246	58	Inhibitor_I29: Cathepsin propeptide inhibitor doma	99.4
cd00585	437	Peptidase_C1B Peptidase C1B subfamily (MEROPS data	99.33
smart00848	57	Inhibitor_I29 Cathepsin propeptide inhibitor domai	99.15
KOG4128|consensus	457		98.1
PF03051	438	Peptidase_C1_2: Peptidase C1-like family This fami	97.9
PF08127	41	Propeptide_C1: Peptidase family C1 propeptide; Int	96.29
PF08127	41	Propeptide_C1: Peptidase family C1 propeptide; Int	95.02
PF13529	144	Peptidase_C39_2: Peptidase_C39 like family; PDB: 3	91.97
COG3579	444	PepC Aminopeptidase C [Amino acid transport and me	90.47

>KOG1542|consensus

Probab=100.00  E-value=1.2e-69  Score=539.67  Aligned_cols=272  Identities=40%  Similarity=0.777  Sum_probs=243.6

Q ss_pred             chhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeCcCCCCChHHHHh-hcCCCCC-CcccccCCC
Q psy11694        191 NLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQ-LTGLNLD-STLEDIQPS  268 (655)
Q Consensus       191 ~l~~~~~q~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~~~~~g~N~FsDlt~eEf~~-~~~~~~~-~~~~~~~~~  268 (655)
                      +.|.+|..+|+|+|.+.+|...|+.||+.|+..++.++....+++.+|+|+|||||+|||++ +++.+.. ..+.     
T Consensus        69 ~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~~~~~~-----  143 (372)
T KOG1542|consen   69 DSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEFKKIYLGVKRRGSKLP-----  143 (372)
T ss_pred             HHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHHHHHhhccccccccCc-----
Confidence            46889999999999999999999999999999999999888889999999999999999999 7765442 1110     


Q ss_pred             CCCCCCCCCcchhhhhhhcccCCCCCCCCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHH
Q psy11694        269 LQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQL  348 (655)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l  348 (655)
                          ...         ... .+.....||++||||++|.||||||||+||||||||+++++|+.++|+++++++||||+|
T Consensus       144 ----~~~---------~~~-~~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeL  209 (372)
T KOG1542|consen  144 ----GDA---------AEA-PIEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQEL  209 (372)
T ss_pred             ----ccc---------ccC-cCCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhh
Confidence                000         000 012246899999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCCCCCCCCCcHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCC
Q psy11694        349 VDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGP  428 (655)
Q Consensus       349 ~dC~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gP  428 (655)
                      |||+..++||+||.+..||+|+.+.+|+..|.+|||++..+. .|..++.. ..+.|++|..++. ||++|.+.|.++||
T Consensus       210 vDCD~~d~gC~GGl~~nA~~~~~~~gGL~~E~dYPY~g~~~~-~C~~~~~~-~~v~I~~f~~l~~-nE~~ia~wLv~~GP  286 (372)
T KOG1542|consen  210 VDCDSCDNGCNGGLMDNAFKYIKKAGGLEKEKDYPYTGKKGN-QCHFDKSK-IVVSIKDFSMLSN-NEDQIAAWLVTFGP  286 (372)
T ss_pred             hcccCcCCcCCCCChhHHHHHHHHhCCccccccCCccccCCC-ccccchhh-ceEEEeccEecCC-CHHHHHHHHHhcCC
Confidence            999999999999999999999888889999999999998875 89988866 8899999999998 99999999999999


Q ss_pred             eEEEEEcCCcccccccEEe----------CCceE----EcC---CccEEEEecCCCCccCCCceEEecccCCc
Q psy11694        429 LSVGMNANGLFYYSGGVID----------LNQRL----YGT---SIPYWIVKNSWGSDWGEKVEDKVGSSGNR  484 (655)
Q Consensus       429 V~v~i~~~~~~~Y~~Gi~~----------~~Hav----yg~---g~~yWivkNSWG~~WGe~Gy~~i~~~~~~  484 (655)
                      |+|+|++..+++|.+||..          ++|+|    ||.   ..+|||||||||++|||+||+|+.|+.|.
T Consensus       287 i~vgiNa~~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N~  359 (372)
T KOG1542|consen  287 LSVGINAKPMQFYRGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGSNA  359 (372)
T ss_pred             eEEEEchHHHHHhcccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEeccccc
Confidence            9999998889999999986          79999    776   58999999999999999999999998664

>PTZ00203 cathepsin L protease; Provisional

Probab=100.00  E-value=5.9e-63  Score=519.37  Aligned_cols=283  Identities=34%  Similarity=0.661  Sum_probs=231.7

Q ss_pred             ccchhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeCcCCCCChHHHHh-hcCCCCCCcccccCC
Q psy11694        189 GNNLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQ-LTGLNLDSTLEDIQP  267 (655)
Q Consensus       189 ~~~l~~~~~q~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~~~~~g~N~FsDlt~eEf~~-~~~~~~~~~~~~~~~  267 (655)
                      ...+|+.|+++|+|.|.+.+|+.+|+.||++|+++|++||++. .+|++|+|+|+|||+|||.+ +++....  ..  .+
T Consensus        34 ~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~-~~~~lg~N~FaDlT~eEf~~~~l~~~~~--~~--~~  108 (348)
T PTZ00203         34 AAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARN-PHARFGITKFFDLSEAEFAARYLNGAAY--FA--AA  108 (348)
T ss_pred             HHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccC-CCeEEeccccccCCHHHHHHHhcCCCcc--cc--cc
Confidence            4457999999999999998888999999999999999999864 48999999999999999998 6542111  00  00


Q ss_pred             CCCCCCCCCCcchhhhhhhcccCCCCCCCCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHH
Q psy11694        268 SLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQ  347 (655)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~  347 (655)
                        ......     ....    ......+||++||||++|+|+||||||.||||||||++++||++++|++++.+.||+|+
T Consensus       109 --~~~~~~-----~~~~----~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQq  177 (348)
T PTZ00203        109 --KQHAGQ-----HYRK----ARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQ  177 (348)
T ss_pred             --cccccc-----cccc----cccccccCCCCCcCCcCCCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHH
Confidence              000000     0000    00012368999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCCCCCCCCCcHHHHHHHHHHc--CCCCCCCCCCCCCCCCC-CccccCCCCCceeeeeceEEcCCCCHHHHHHHHh
Q psy11694        348 LVDCDMSNGGCNGGRMDDALQYIIDN--GGVVSDQAYPYKASESE-RGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVA  424 (655)
Q Consensus       348 l~dC~~~~~gC~GG~~~~a~~~~~~~--~Gi~~e~~yPY~~~~~~-~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~  424 (655)
                      |+||+..+.||+||++..||+|+.++  +|+++|++|||.+..+. ..|.........+++.+|..++. +++.|+.+|+
T Consensus       178 LvdC~~~~~GC~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~-~e~~~~~~l~  256 (348)
T PTZ00203        178 LVSCDHVDNGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMES-SERVMAAWLA  256 (348)
T ss_pred             HHhccCCCCCCCCCCHHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecceeecCc-CHHHHHHHHH
Confidence            99999878899999999999999864  67999999999987652 25764332213567889988876 7899999999


Q ss_pred             hCCCeEEEEEcCCcccccccEEe------CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCCcccccc
Q psy11694        425 TRGPLSVGMNANGLFYYSGGVID------LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLE  489 (655)
Q Consensus       425 ~~gPV~v~i~~~~~~~Y~~Gi~~------~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~  489 (655)
                      ++|||+|+|++..|++|++|||.      ++|||    ||.  +.+|||||||||++|||+|||||+|+.|. |++.
T Consensus       257 ~~GPv~v~i~a~~f~~Y~~GIy~~c~~~~~nHaVliVGYG~~~g~~YWiikNSWG~~WGe~GY~ri~rg~n~-Cgi~  332 (348)
T PTZ00203        257 KNGPISIAVDASSFMSYHSGVLTSCIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGVNA-CLLT  332 (348)
T ss_pred             hCCCEEEEEEhhhhcCccCceeeccCCCCCCeEEEEEEEecCCCceEEEEEcCCCCCcCcCceEEEEcCCCc-cccc
Confidence            99999999999779999999997      68999    776  67999999999999999999999997553 4443

>PTZ00021 falcipain-2; Provisional

Probab=100.00  E-value=7.3e-62  Score=524.38  Aligned_cols=292  Identities=33%  Similarity=0.599  Sum_probs=234.7

Q ss_pred             chhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeCcCCCCChHHHHh-hcCCCCCCcccccCCCC
Q psy11694        191 NLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQ-LTGLNLDSTLEDIQPSL  269 (655)
Q Consensus       191 ~l~~~~~q~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~~~~~g~N~FsDlt~eEf~~-~~~~~~~~~~~~~~~~~  269 (655)
                      ..|+.|+++|+|+|.+.+|+..|+.||++|+++|++||++++.+|++|+|+|+|||.|||++ +++++... ...  ...
T Consensus       167 ~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF~~~~l~~~~~~-~~~--~~~  243 (489)
T PTZ00021        167 NSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEFKKKYLTLKSFD-FKS--NGK  243 (489)
T ss_pred             HHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHHHHHhccccccc-ccc--ccc
Confidence            46999999999999999999999999999999999999876679999999999999999998 76643210 000  000


Q ss_pred             CCCCCCCCcchhhhhhhcccCCCCCCCCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHH
Q psy11694        270 QAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLV  349 (655)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~  349 (655)
                      ......... ........   .....+|++||||++|.|+||||||.||||||||++++||++++|+++..+.||+|+|+
T Consensus       244 ~~~~~~~~~-~~~~~~~~---~~~~~~P~s~DWR~~g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQqLV  319 (489)
T PTZ00021        244 KSPRVINYD-DVIKKYKP---KDATFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELV  319 (489)
T ss_pred             ccccccccc-cccccccc---ccccCCccccccccCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHHHHh
Confidence            000000000 00000000   00113599999999999999999999999999999999999999999999999999999


Q ss_pred             HccCCCCCCCCCcHHHHHHHHHHcCCCCCCCCCCCCCCC-CCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCC
Q psy11694        350 DCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASE-SERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGP  428 (655)
Q Consensus       350 dC~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~-~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gP  428 (655)
                      ||+..+.||+||++..||+|+.+++||++|++|||.+.. +  .|....+. ..++|.+|..++   +++|+++|+..||
T Consensus       320 DCs~~n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~~--~C~~~~~~-~~~~i~~y~~i~---~~~lk~al~~~GP  393 (489)
T PTZ00021        320 DCSFKNNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTPE--LCNIDRCK-EKYKIKSYVSIP---EDKFKEAIRFLGP  393 (489)
T ss_pred             hhccCCCCCCCcchHhhhhhhhhccccCcccccCccCCCCC--cccccccc-ccceeeeEEEec---HHHHHHHHHhcCC
Confidence            999888999999999999999888899999999999874 4  78765443 567889998886   5789999999999


Q ss_pred             eEEEEEcCC-cccccccEEe------CCceE----EcCC------------ccEEEEecCCCCccCCCceEEecccCC--
Q psy11694        429 LSVGMNANG-LFYYSGGVID------LNQRL----YGTS------------IPYWIVKNSWGSDWGEKVEDKVGSSGN--  483 (655)
Q Consensus       429 V~v~i~~~~-~~~Y~~Gi~~------~~Hav----yg~g------------~~yWivkNSWG~~WGe~Gy~~i~~~~~--  483 (655)
                      |+|+|++.. |++|++|||+      ++|||    ||..            .+|||||||||++|||+|||||+|+.+  
T Consensus       394 Vsv~i~a~~~f~~YkgGIy~~~C~~~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~  473 (489)
T PTZ00021        394 ISVSIAVSDDFAFYKGGIFDGECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDENGL  473 (489)
T ss_pred             eEEEEEeecccccCCCCcCCCCCCCccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCCCC
Confidence            999999975 9999999997      69999    6641            369999999999999999999999754  


Q ss_pred             -ccccccccCCcc
Q psy11694        484 -RTRDLELTGVLP  495 (655)
Q Consensus       484 -~~~~~~~~gv~p  495 (655)
                       ..|++......|
T Consensus       474 ~n~CGI~t~a~yP  486 (489)
T PTZ00021        474 MKTCSLGTEAYVP  486 (489)
T ss_pred             CCCCCCcccceeE
Confidence             356665544443

>PTZ00200 cysteine proteinase; Provisional

Probab=100.00  E-value=2.6e-59  Score=503.78  Aligned_cols=296  Identities=29%  Similarity=0.513  Sum_probs=230.4

Q ss_pred             cchhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeCcCCCCChHHHHh-hcCCCCCCcccccCCC
Q psy11694        190 NNLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQ-LTGLNLDSTLEDIQPS  268 (655)
Q Consensus       190 ~~l~~~~~q~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~~~~~g~N~FsDlt~eEf~~-~~~~~~~~~~~~~~~~  268 (655)
                      ...|+.|+++|+|.|.+.+|+..|+.+|++|++.|++||..  .+|++|+|+|+|||+|||.+ +++++.+.......+.
T Consensus       123 ~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~--~~y~lgiN~FsDlT~eEF~~~~~~~~~~~~~~~~~~~  200 (448)
T PTZ00200        123 YLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKGD--EPYSKEINKFSDLTEEEFRKLFPVIKVPPKSNSTSHN  200 (448)
T ss_pred             HHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcCc--CCeEEeccccccCCHHHHHHHhccCCCcccccccccc
Confidence            35699999999999999989999999999999999999963  58999999999999999998 6654322100000000


Q ss_pred             CC--CCCCCCCc-chhhh-hhhc-ccC-CCCCCCCCceecCCCCCCCcCCCCC-CCccHHHHHHHHHHHHHHHHhcCCCc
Q psy11694        269 LQ--APFSSNQT-DTEMR-AFQF-NSL-RHGDDLPEAFDWRAEGVISKVKEQG-KCACCWAFSAVGVVEAMHAIQGNSLT  341 (655)
Q Consensus       269 ~~--~~~~~~~~-~~~~~-~~~~-~~~-~~~~~lP~~~Dwr~~g~vtpVkdQg-~CGsCwAfa~~~~le~~~~i~~~~~~  341 (655)
                      ..  ........ ..... ..+. ..+ .....+|++||||+.|.|+|||||| .||||||||+++++|++++|+++..+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i~~~~~~  280 (448)
T PTZ00200        201 NDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYRDKSV  280 (448)
T ss_pred             cccccccccccccccccccccccccccccccccCCCCccCCCCCCCCCcccCCCccchHHHHhHHHHHHHHHHHhcCCCe
Confidence            00  00000000 00000 0000 000 0012369999999999999999999 99999999999999999999999999


Q ss_pred             CCCHHHHHHccCCCCCCCCCcHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHH
Q psy11694        342 ELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKK  421 (655)
Q Consensus       342 ~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~  421 (655)
                      .||+|+|+||+..+.||+||++..||+|+.++ ||++|++|||.+..+  .|.....  ..+.|.+|..++  +.+.|++
T Consensus       281 ~LSeQqLvDC~~~~~GC~GG~~~~A~~yi~~~-Gi~~e~~YPY~~~~~--~C~~~~~--~~~~i~~y~~~~--~~~~l~~  353 (448)
T PTZ00200        281 DLSEQELVNCDTKSQGCSGGYPDTALEYVKNK-GLSSSSDVPYLAKDG--KCVVSST--KKVYIDSYLVAK--GKDVLNK  353 (448)
T ss_pred             ecCHHHHhhccCccCCCCCCcHHHHHHHHhhc-CccccccCCCCCCCC--CCcCCCC--CeeEecceEecC--HHHHHHH
Confidence            99999999999888999999999999999877 999999999999887  8976543  356688887664  3556666


Q ss_pred             HHhhCCCeEEEEEcCC-cccccccEEe------CCceE----EcC----CccEEEEecCCCCccCCCceEEeccc--CCc
Q psy11694        422 WVATRGPLSVGMNANG-LFYYSGGVID------LNQRL----YGT----SIPYWIVKNSWGSDWGEKVEDKVGSS--GNR  484 (655)
Q Consensus       422 ~l~~~gPV~v~i~~~~-~~~Y~~Gi~~------~~Hav----yg~----g~~yWivkNSWG~~WGe~Gy~~i~~~--~~~  484 (655)
                      ++. .|||+|+|++.. |+.|++|||.      ++|||    ||.    |.+|||||||||++|||+|||||+|+  +..
T Consensus       354 ~l~-~GPV~v~i~~~~~f~~Yk~GIy~~~C~~~~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r~~~g~n  432 (448)
T PTZ00200        354 SLV-ISPTVVYIAVSRELLKYKSGVYNGECGKSLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNEGTD  432 (448)
T ss_pred             HHh-cCCEEEEeecccccccCCCCccccccCCCCcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEeCCCCCC
Confidence            665 899999999975 9999999997      69999    663    67899999999999999999999996  345


Q ss_pred             cccccccCCcc
Q psy11694        485 TRDLELTGVLP  495 (655)
Q Consensus       485 ~~~~~~~gv~p  495 (655)
                      .|++...+..|
T Consensus       433 ~CGI~~~~~~P  443 (448)
T PTZ00200        433 KCGILTVGLTP  443 (448)
T ss_pred             cCCccccceee
Confidence            67777766655

>KOG1543|consensus

Probab=100.00  E-value=1.6e-55  Score=460.06  Aligned_cols=264  Identities=37%  Similarity=0.687  Sum_probs=228.4

Q ss_pred             hhccccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeCcCCCCChHHHHh-hcCCCCCCcccccCCCCCCCCCC
Q psy11694        197 VQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQ-LTGLNLDSTLEDIQPSLQAPFSS  275 (655)
Q Consensus       197 ~q~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~~~~~g~N~FsDlt~eEf~~-~~~~~~~~~~~~~~~~~~~~~~~  275 (655)
                      +.+|.+.|.+..|...|+.+|.+|+..|..||.....+|.+|+|+|+|+|.+|+.+ +.+.+.+..        ...   
T Consensus        30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~--------~~~---   98 (325)
T KOG1543|consen   30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEFKRKKTGKKPPEI--------KRD---   98 (325)
T ss_pred             hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHHHHhhccccCccc--------ccc---
Confidence            56778888877788899999999999999999976779999999999999999999 666544311        000   


Q ss_pred             CCcchhhhhhhcccCCCCCCCCCceecCCCC-CCCcCCCCCCCccHHHHHHHHHHHHHHHHhcC-CCcCCCHHHHHHccC
Q psy11694        276 NQTDTEMRAFQFNSLRHGDDLPEAFDWRAEG-VISKVKEQGKCACCWAFSAVGVVEAMHAIQGN-SLTELSVQQLVDCDM  353 (655)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g-~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~-~~~~lS~q~l~dC~~  353 (655)
                                .........++|++||||+++ .++||||||.||||||||++++||++++|+++ .++.||+|+|+||+.
T Consensus        99 ----------~~~~~~~~~~~p~s~DwR~~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~  168 (325)
T KOG1543|consen   99 ----------KFTEKLDGDDLPDSFDWRDKGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCG  168 (325)
T ss_pred             ----------ccccccchhhCCCCccccccCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccC
Confidence                      000111246899999999996 55559999999999999999999999999999 899999999999998


Q ss_pred             C-CCCCCCCcHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEE
Q psy11694        354 S-NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVG  432 (655)
Q Consensus       354 ~-~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~  432 (655)
                      . +.||+||++..|++|+.+++++.++.+|||.+..+  .|..+... ..+.+.++..++. ++++|+.+|+.+|||+|+
T Consensus       169 ~~~~GC~GG~~~~A~~yi~~~G~~t~~~~Ypy~~~~~--~C~~~~~~-~~~~~~~~~~~~~-~e~~i~~~v~~~GPv~v~  244 (325)
T KOG1543|consen  169 ECGDGCNGGEPKNAFKYIKKNGGVTECENYPYIGKDG--TCKSNKKD-KTVTIKGFYNVPA-NEEAIAEAVAKNGPVSVA  244 (325)
T ss_pred             CCCCCcCCCCHHHHHHHHHHhCCCCCCcCCCCcCCCC--CccCCCcc-ceeEeeeeeecCc-CHHHHHHHHHhcCCeEEE
Confidence            4 88999999999999999995555599999999998  99988764 7788899998888 499999999999999999


Q ss_pred             EEcCC-cccccccEEe--------CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCCcc
Q psy11694        433 MNANG-LFYYSGGVID--------LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNRT  485 (655)
Q Consensus       433 i~~~~-~~~Y~~Gi~~--------~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~  485 (655)
                      |++.. |+.|++|||.        ++|||    ||+  +.+|||||||||++|||+|||||.|+.+..
T Consensus       245 ~~a~~~F~~Y~~GVy~~~~~~~~~~~Hav~iVGyG~~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~~  312 (325)
T KOG1543|consen  245 IDAYEDFSLYKGGVYAEEKGDDKEGDHAVLIVGYGTGDGVDYWIVKNSWGTDWGEKGYFRIARGVNKC  312 (325)
T ss_pred             EeehhhhhhccCceEeCCCCCCCCCCceEEEEEEcCCCCceeEEEEcCCCCCcccCceEEEecCCCch
Confidence            99998 9999999997        68999    886  579999999999999999999999987764

>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

Probab=100.00  E-value=2.3e-46  Score=379.96  Aligned_cols=192  Identities=33%  Similarity=0.617  Sum_probs=163.4

Q ss_pred             CCCceecCCCC----CCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCC------CcCCCHHHHHHccCCCCCCCCCcHHH
Q psy11694        296 LPEAFDWRAEG----VISKVKEQGKCACCWAFSAVGVVEAMHAIQGNS------LTELSVQQLVDCDMSNGGCNGGRMDD  365 (655)
Q Consensus       296 lP~~~Dwr~~g----~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~------~~~lS~q~l~dC~~~~~gC~GG~~~~  365 (655)
                      ||++||||+.+    +|+||||||.||||||||++++||++++|+++.      .+.||+|+|+||+..+.||+||++..
T Consensus         1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~~~GC~GG~~~~   80 (243)
T cd02621           1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQYSQGCDGGFPFL   80 (243)
T ss_pred             CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcCCCCCCCCCCHHH
Confidence            79999999988    999999999999999999999999999998776      68999999999998788999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCC-CCCCCccccCCCCCceeeeeceEEcC----CCCHHHHHHHHhhCCCeEEEEEcCC-cc
Q psy11694        366 ALQYIIDNGGVVSDQAYPYKA-SESERGCLVGEEEGFKVKVKEYSRIP----YGEEEEMKKWVATRGPLSVGMNANG-LF  439 (655)
Q Consensus       366 a~~~~~~~~Gi~~e~~yPY~~-~~~~~~C~~~~~~~~~~~i~~~~~v~----~~~~~~ik~~l~~~gPV~v~i~~~~-~~  439 (655)
                      |++|+.++ |+++|++|||.. ...  .|.........+++..|..+.    ..++++||++|+++|||+++|++.. |+
T Consensus        81 a~~~~~~~-Gi~~e~~yPY~~~~~~--~C~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~~~F~  157 (243)
T cd02621          81 VGKFAEDF-GIVTEDYFPYTADDDR--PCKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVYSDFD  157 (243)
T ss_pred             HHHHHHhc-CcCCCceeCCCCCCCC--CCCCCccccccccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEeccccc
Confidence            99999887 999999999998 555  787554121344455555442    3478999999999999999999976 99


Q ss_pred             cccccEEe--------------------CCceE----EcC----CccEEEEecCCCCccCCCceEEecccCCcccccccc
Q psy11694        440 YYSGGVID--------------------LNQRL----YGT----SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELT  491 (655)
Q Consensus       440 ~Y~~Gi~~--------------------~~Hav----yg~----g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~~~  491 (655)
                      +|++|||+                    ++|+|    ||+    +.+|||||||||++|||+|||||+|+.| .|++...
T Consensus       158 ~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~~-~cgi~~~  236 (243)
T cd02621         158 FYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTN-ECGIESQ  236 (243)
T ss_pred             ccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCCc-ccCcccc
Confidence            99999997                    26998    775    5699999999999999999999999755 3555433

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc

>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

Probab=100.00  E-value=7.5e-46  Score=373.93  Aligned_cols=190  Identities=36%  Similarity=0.685  Sum_probs=159.4

Q ss_pred             CCceecCCC--CCC--CcCCCCCCCccHHHHHHHHHHHHHHHHhcC--CCcCCCHHHHHHccCC-CCCCCCCcHHHHHHH
Q psy11694        297 PEAFDWRAE--GVI--SKVKEQGKCACCWAFSAVGVVEAMHAIQGN--SLTELSVQQLVDCDMS-NGGCNGGRMDDALQY  369 (655)
Q Consensus       297 P~~~Dwr~~--g~v--tpVkdQg~CGsCwAfa~~~~le~~~~i~~~--~~~~lS~q~l~dC~~~-~~gC~GG~~~~a~~~  369 (655)
                      |++||||++  +++  +||+|||.||||||||++++||++++|+++  +.+.||+|+|+||+.. +.||+||++..||+|
T Consensus         1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~~~~gC~GG~~~~a~~~   80 (236)
T cd02620           1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSGCGDGCNGGYPDAAWKY   80 (236)
T ss_pred             CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCCCCCCCCCCCHHHHHHH
Confidence            889999996  554  599999999999999999999999999887  7789999999999976 789999999999999


Q ss_pred             HHHcCCCCCCCCCCCCCCCCC----------------CccccCCC---CCceeeeeceEEcCCCCHHHHHHHHhhCCCeE
Q psy11694        370 IIDNGGVVSDQAYPYKASESE----------------RGCLVGEE---EGFKVKVKEYSRIPYGEEEEMKKWVATRGPLS  430 (655)
Q Consensus       370 ~~~~~Gi~~e~~yPY~~~~~~----------------~~C~~~~~---~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~  430 (655)
                      +.++ |+++|++|||.+....                ..|.....   ....+++..+..+.. ++++||.+|+++|||+
T Consensus        81 i~~~-G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~-~~~~ik~~l~~~GPv~  158 (236)
T cd02620          81 LTTT-GVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVPS-DETDIMKEIMTNGPVQ  158 (236)
T ss_pred             HHhc-CCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeCC-HHHHHHHHHHHCCCeE
Confidence            9987 9999999999876542                12432221   112345556666654 7899999999999999


Q ss_pred             EEEEcCC-cccccccEEe-------CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCCcccccc
Q psy11694        431 VGMNANG-LFYYSGGVID-------LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLE  489 (655)
Q Consensus       431 v~i~~~~-~~~Y~~Gi~~-------~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~  489 (655)
                      ++|.+.. |+.|++|||.       ++|||    ||+  +.+|||||||||++|||+|||||+|+.| .|++.
T Consensus       159 v~i~~~~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~~-~cgi~  230 (236)
T cd02620         159 AAFTVYEDFLYYKSGVYQHTSGKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGSN-ECGIE  230 (236)
T ss_pred             EEEEechhhhhcCCcEEeecCCCCcCCeEEEEEEEeccCCeeEEEEEeCCCCCCCCCcEEEEEccCc-ccccc
Confidence            9999965 9999999997       58999    775  7799999999999999999999999754 34443

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane

>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

Probab=100.00  E-value=1.3e-45  Score=372.88  Aligned_cols=181  Identities=31%  Similarity=0.652  Sum_probs=157.9

Q ss_pred             CCCceecCCCC---CCCcCCCCC---CCccHHHHHHHHHHHHHHHHhcC---CCcCCCHHHHHHccCCCCCCCCCcHHHH
Q psy11694        296 LPEAFDWRAEG---VISKVKEQG---KCACCWAFSAVGVVEAMHAIQGN---SLTELSVQQLVDCDMSNGGCNGGRMDDA  366 (655)
Q Consensus       296 lP~~~Dwr~~g---~vtpVkdQg---~CGsCwAfa~~~~le~~~~i~~~---~~~~lS~q~l~dC~~~~~gC~GG~~~~a  366 (655)
                      ||++||||+++   +|+||||||   .||||||||++++||++++|+++   ..+.||+|+|+||+. +.||+||++..|
T Consensus         1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~-~~gC~GG~~~~a   79 (239)
T cd02698           1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG-GGSCHGGDPGGV   79 (239)
T ss_pred             CCCCcccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC-CCCccCcCHHHH
Confidence            69999999987   999999998   89999999999999999999865   357899999999987 789999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCCCCCCccccC----------CC----CCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEE
Q psy11694        367 LQYIIDNGGVVSDQAYPYKASESERGCLVG----------EE----EGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVG  432 (655)
Q Consensus       367 ~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~----------~~----~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~  432 (655)
                      ++|+.++ |+++|.+|||.+...  .|...          .+    ....+++++|..++  ++++||++|.++|||+++
T Consensus        80 ~~~~~~~-Gl~~e~~yPY~~~~~--~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~--~~~~i~~~l~~~GPV~v~  154 (239)
T cd02698          80 YEYAHKH-GIPDETCNPYQAKDG--ECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVS--GRDKMMAEIYARGPISCG  154 (239)
T ss_pred             HHHHHHc-CcCCCCeeCCcCCCC--CCcCCCCCCCcccCcccccccccceEEeeeceecC--CHHHHHHHHHHcCCEEEE
Confidence            9999887 999999999988665  44321          00    11346677777775  578999999999999999


Q ss_pred             EEcCC-cccccccEEe-------CCceE----EcC---CccEEEEecCCCCccCCCceEEecccC
Q psy11694        433 MNANG-LFYYSGGVID-------LNQRL----YGT---SIPYWIVKNSWGSDWGEKVEDKVGSSG  482 (655)
Q Consensus       433 i~~~~-~~~Y~~Gi~~-------~~Hav----yg~---g~~yWivkNSWG~~WGe~Gy~~i~~~~  482 (655)
                      |.+.. |+.|++|||+       ++|||    ||+   +.+|||||||||++|||+|||||+|+.
T Consensus       155 i~~~~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~  219 (239)
T cd02698         155 IMATEALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSS  219 (239)
T ss_pred             EEecccccccCCeEEccCCCCCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccC
Confidence            99986 9999999997       68999    765   679999999999999999999999976

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.

>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

Probab=100.00  E-value=7.8e-45  Score=361.22  Aligned_cols=189  Identities=43%  Similarity=0.895  Sum_probs=170.8

Q ss_pred             CCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCC-CCCCCCCcHHHHHHHHHHcCC
Q psy11694        297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS-NGGCNGGRMDDALQYIIDNGG  375 (655)
Q Consensus       297 P~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~-~~gC~GG~~~~a~~~~~~~~G  375 (655)
                      |++||||+.+.++||+|||.||||||||++++||++++++++....||+|+|++|... +.||+||++..|++++.+. |
T Consensus         1 P~~~d~r~~~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~gC~GG~~~~a~~~~~~~-G   79 (210)
T cd02248           1 PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTSGNNGCNGGNPDNAFEYVKNG-G   79 (210)
T ss_pred             CCcccCCcCCCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCCCCCCCCCCCHHHhHHHHHHC-C
Confidence            7899999999999999999999999999999999999999998899999999999976 7899999999999988877 9


Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC-cccccccEEe-------
Q psy11694        376 VVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG-LFYYSGGVID-------  447 (655)
Q Consensus       376 i~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~-~~~Y~~Gi~~-------  447 (655)
                      +++|++|||.....  .|...... ..+++.+|..++..++++||++|+++|||+++|.+.. |+.|++|||.       
T Consensus        80 i~~e~~yPY~~~~~--~C~~~~~~-~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~y~~Giy~~~~~~~~  156 (210)
T cd02248          80 LASESDYPYTGKDG--TCKYNSSK-VGAKITGYSNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGIYSGPCCSNT  156 (210)
T ss_pred             cCccccCCccCCCC--CccCCCCc-ccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecCcccccCCCCceeCCCCCCC
Confidence            99999999998766  78766543 6789999999988779999999999999999999986 9999999997       


Q ss_pred             -CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCCccccccc
Q psy11694        448 -LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLEL  490 (655)
Q Consensus       448 -~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~~  490 (655)
                       .+|||    ||+  +.+|||||||||++||++|||||+++.+ .|++..
T Consensus       157 ~~~Hav~iVGy~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~~-~cgi~~  205 (210)
T cd02248         157 NLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGSN-LCGIAS  205 (210)
T ss_pred             cCCEEEEEEEEeecCCceEEEEEcCCCCccccCcEEEEEcCCC-ccCcee
Confidence             57999    666  5799999999999999999999998764 455543

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h

>PTZ00364 dipeptidyl-peptidase I precursor; Provisional

Probab=100.00  E-value=2.4e-44  Score=392.62  Aligned_cols=206  Identities=22%  Similarity=0.462  Sum_probs=168.8

Q ss_pred             CCCCCCceecCCCC---CCCcCCCCCC---CccHHHHHHHHHHHHHHHHhcC------CCcCCCHHHHHHccCCCCCCCC
Q psy11694        293 GDDLPEAFDWRAEG---VISKVKEQGK---CACCWAFSAVGVVEAMHAIQGN------SLTELSVQQLVDCDMSNGGCNG  360 (655)
Q Consensus       293 ~~~lP~~~Dwr~~g---~vtpVkdQg~---CGsCwAfa~~~~le~~~~i~~~------~~~~lS~q~l~dC~~~~~gC~G  360 (655)
                      ..+||++||||++|   +|+||||||.   ||||||||++++||++++|+++      ..+.||+|+|+||+..+.||+|
T Consensus       202 ~~~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~~n~GCdG  281 (548)
T PTZ00364        202 GDPPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQYGQGCAG  281 (548)
T ss_pred             ccCCCCccccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccCCCCCCCC
Confidence            35799999999987   7999999999   9999999999999999999873      4678999999999987899999


Q ss_pred             CcHHHHHHHHHHcCCCCCCCCC--CCCCCCCC-CccccCCCCCceeeeec------eEEcCCCCHHHHHHHHhhCCCeEE
Q psy11694        361 GRMDDALQYIIDNGGVVSDQAY--PYKASESE-RGCLVGEEEGFKVKVKE------YSRIPYGEEEEMKKWVATRGPLSV  431 (655)
Q Consensus       361 G~~~~a~~~~~~~~Gi~~e~~y--PY~~~~~~-~~C~~~~~~~~~~~i~~------~~~v~~~~~~~ik~~l~~~gPV~v  431 (655)
                      |++..|++|+.++ ||++|++|  ||.+.++. ..|...... ..+.+++      |..+. .++++|+.+|+++|||+|
T Consensus       282 G~p~~A~~yi~~~-GI~tE~dY~~PY~~~dg~~~~Ck~~~~~-~~y~~~~~~~I~gyy~~~-~~e~~I~~eI~~~GPVsV  358 (548)
T PTZ00364        282 GFPEEVGKFAETF-GILTTDSYYIPYDSGDGVERACKTRRPS-RRYYFTNYGPLGGYYGAV-TDPDEIIWEIYRHGPVPA  358 (548)
T ss_pred             CcHHHHHHHHHhC-CcccccccCCCCCCCCCCCCCCCCCccc-ceeeeeeeEEecceeecC-CcHHHHHHHHHHcCCeEE
Confidence            9999999999887 99999999  99876551 247654333 3333433      43333 378899999999999999


Q ss_pred             EEEcCC-cccccccEEe--------------------------CCceE----EcC---CccEEEEecCCCC--ccCCCce
Q psy11694        432 GMNANG-LFYYSGGVID--------------------------LNQRL----YGT---SIPYWIVKNSWGS--DWGEKVE  475 (655)
Q Consensus       432 ~i~~~~-~~~Y~~Gi~~--------------------------~~Hav----yg~---g~~yWivkNSWG~--~WGe~Gy  475 (655)
                      +|++.. |+.|++|||.                          .+|||    ||.   |.+|||||||||+  +|||+||
T Consensus       359 aIda~~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~GY  438 (548)
T PTZ00364        359 SVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGT  438 (548)
T ss_pred             EEEechHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCCe
Confidence            999986 8899998863                          47999    774   6799999999999  9999999


Q ss_pred             EEecccCCccccccccCC--ccccccccc
Q psy11694        476 DKVGSSGNRTRDLELTGV--LPSKLSRLA  502 (655)
Q Consensus       476 ~~i~~~~~~~~~~~~~gv--~p~~~~~ls  502 (655)
                      |||+|+.| .|+++...+  .|.++.+++
T Consensus       439 fRI~RG~N-~CGIes~~v~~~~~~~~~~~  466 (548)
T PTZ00364        439 RKIARGVN-AYNIESEVVVMYWAPYPDVL  466 (548)
T ss_pred             EEEEcCCC-cccccceeeeeeeecCCCcc
Confidence            99999865 466665544  444444444

>PTZ00049 cathepsin C-like protein; Provisional

Probab=100.00  E-value=1.2e-43  Score=390.13  Aligned_cols=197  Identities=26%  Similarity=0.486  Sum_probs=162.3

Q ss_pred             CCCCCCceecCCC----CCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCC-----C-----cCCCHHHHHHccCCCCCC
Q psy11694        293 GDDLPEAFDWRAE----GVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNS-----L-----TELSVQQLVDCDMSNGGC  358 (655)
Q Consensus       293 ~~~lP~~~Dwr~~----g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~-----~-----~~lS~q~l~dC~~~~~gC  358 (655)
                      ..+||++||||+.    +.++||+|||.||||||||++++||++++|+++.     .     ..||+|+||||+..+.||
T Consensus       378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~nqGC  457 (693)
T PTZ00049        378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFYDQGC  457 (693)
T ss_pred             cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCCCCCCc
Confidence            3579999999984    6899999999999999999999999999998642     1     279999999999888999


Q ss_pred             CCCcHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccCCCC--------------------------------------C
Q psy11694        359 NGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEE--------------------------------------G  400 (655)
Q Consensus       359 ~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~--------------------------------------~  400 (655)
                      +||++..|++|+.+. ||++|++|||.+..+  .|......                                      .
T Consensus       458 ~GG~~~~A~kya~~~-GI~tEscYPY~a~~g--~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (693)
T PTZ00049        458 NGGFPYLVSKMAKLQ-GIPLDKVFPYTATEQ--TCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEP  534 (693)
T ss_pred             CCCcHHHHHHHHHHC-CCCcCCccCCcCCCC--CCCCCCCCccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999887 999999999998766  66432110                                      0


Q ss_pred             ceeeeeceEEcC-------CCCHHHHHHHHhhCCCeEEEEEcCC-cccccccEEe-------------------------
Q psy11694        401 FKVKVKEYSRIP-------YGEEEEMKKWVATRGPLSVGMNANG-LFYYSGGVID-------------------------  447 (655)
Q Consensus       401 ~~~~i~~~~~v~-------~~~~~~ik~~l~~~gPV~v~i~~~~-~~~Y~~Gi~~-------------------------  447 (655)
                      .++.+++|..+.       ..++++|+.+|+++|||+|+|++.. |++|++|||.                         
T Consensus       535 ~r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G  614 (693)
T PTZ00049        535 ARWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITG  614 (693)
T ss_pred             cceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEechhhhcCCCccccCcccccccccCCccccccccccccc
Confidence            123455666653       2368999999999999999999975 9999999996                         


Q ss_pred             ---CCceE----EcC----C--ccEEEEecCCCCccCCCceEEecccCCccccccccCC
Q psy11694        448 ---LNQRL----YGT----S--IPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGV  493 (655)
Q Consensus       448 ---~~Hav----yg~----g--~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~~~gv  493 (655)
                         ++|||    ||.    |  .+|||||||||++||++|||||+|+.| .|+++...+
T Consensus       615 ~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N-~CGIEs~a~  672 (693)
T PTZ00049        615 WEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKN-FSGIESQSL  672 (693)
T ss_pred             cccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCCC-ccCCcccee
Confidence               37998    665    3  379999999999999999999999865 455554433

>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification

Probab=100.00  E-value=1.1e-42  Score=347.75  Aligned_cols=199  Identities=37%  Similarity=0.764  Sum_probs=169.0

Q ss_pred             CCCceecCCC-CCCCcCCCCCCCccHHHHHHHHHHHHHHHHhc-CCCcCCCHHHHHHccC-CCCCCCCCcHHHHHHHHHH
Q psy11694        296 LPEAFDWRAE-GVISKVKEQGKCACCWAFSAVGVVEAMHAIQG-NSLTELSVQQLVDCDM-SNGGCNGGRMDDALQYIID  372 (655)
Q Consensus       296 lP~~~Dwr~~-g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~-~~~~~lS~q~l~dC~~-~~~gC~GG~~~~a~~~~~~  372 (655)
                      ||++||||+. +.++||+|||.||+|||||+++++|++++++. ...+.||+|+|++|.. .+.+|+||++..|++++.+
T Consensus         1 lP~~~D~r~~~~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~~~~~~c~gg~~~~a~~~~~~   80 (219)
T PF00112_consen    1 LPKSFDWRDKGGRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSNKYNKGCDGGSPFDALKYIKN   80 (219)
T ss_dssp             STSSEEGGGTTTCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHSTGTSSTTBBBEHHHHHHHHHH
T ss_pred             CCCCEecccCCCCcCccccCCcccccccchhccceeccccccccccccccccccccccccccccccccCcccccceeecc
Confidence            7999999997 48999999999999999999999999999998 7889999999999997 5689999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC--cccccccEEe---
Q psy11694        373 NGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVID---  447 (655)
Q Consensus       373 ~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~--~~~Y~~Gi~~---  447 (655)
                      ..|+++|.+|||..... ..|..........++..|..+...++++||++|+++|||+++|.+..  |+.|++|||.   
T Consensus        81 ~~Gi~~e~~~pY~~~~~-~~c~~~~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~~  159 (219)
T PF00112_consen   81 NNGIVTEEDYPYNGNEN-PTCKSKKSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDPPD  159 (219)
T ss_dssp             HTSBEBTTTS--SSSSS-CSSCHSGGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECSTS
T ss_pred             cCccccccccccccccc-ccccccccccccccccccccccccchhHHHHHHhhCceeeeeeeccccccccccceeeeccc
Confidence            44999999999998762 27876654422478899999988789999999999999999999987  8999999998   


Q ss_pred             -----CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCCccccccccCCcc
Q psy11694        448 -----LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLP  495 (655)
Q Consensus       448 -----~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~~~gv~p  495 (655)
                           .+|+|    ||+  +.+|||||||||++||++||+||+++.+..|+++...+.|
T Consensus       160 ~~~~~~~Hav~iVGy~~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~~~c~i~~~~~~~  218 (219)
T PF00112_consen  160 CSNESGGHAVLIVGYDDENGKGYWIVKNSWGTDWGDNGYFRISYDYNNECGIESQAVYP  218 (219)
T ss_dssp             SSSSSEEEEEEEEEEEEETTEEEEEEE-SBTTTSTBTTEEEEESSSSSGGGTTSSEEEE
T ss_pred             cccccccccccccccccccceeeEeeehhhCCccCCCeEEEEeeCCCCcCccCceeeec
Confidence                 58998    665  5889999999999999999999999888777777665443

; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....

>smart00645 Pept_C1 Papain family cysteine protease

Probab=100.00  E-value=1.4e-39  Score=312.79  Aligned_cols=150  Identities=47%  Similarity=0.977  Sum_probs=133.6

Q ss_pred             CCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCC-CCCCCCCcHHHHHHHHHHcC
Q psy11694        296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS-NGGCNGGRMDDALQYIIDNG  374 (655)
Q Consensus       296 lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~-~~gC~GG~~~~a~~~~~~~~  374 (655)
                      ||++||||++++++||+|||.||+|||||++++||++++++++..+.||+|+|++|... +.||+||++..|++|+.+++
T Consensus         1 lP~~~D~R~~~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~~~~gC~GG~~~~a~~~~~~~~   80 (174)
T smart00645        1 LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTGGNNGCNGGLPDNAFEYIKKNG   80 (174)
T ss_pred             CCCcCcccccCCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCCCCCCCCCcCHHHHHHHHHHcC
Confidence            69999999999999999999999999999999999999999998999999999999875 67999999999999998876


Q ss_pred             CCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCCcccccccEEe-------
Q psy11694        375 GVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVID-------  447 (655)
Q Consensus       375 Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~~~~Y~~Gi~~-------  447 (655)
                      |+++|++|||..                                           ++.+.+..|++|++|||+       
T Consensus        81 Gi~~e~~~PY~~-------------------------------------------~~~~~~~~f~~Y~~Gi~~~~~~~~~  117 (174)
T smart00645       81 GLETESCYPYTG-------------------------------------------SVAIDASDFQFYKSGIYDHPGCGSG  117 (174)
T ss_pred             CcccccccCccc-------------------------------------------EEEEEcccccCCcCeEECCCCCCCC
Confidence            999999999964                                           455566669999999997       


Q ss_pred             -CCceE----EcC---CccEEEEecCCCCccCCCceEEecccCCccccc
Q psy11694        448 -LNQRL----YGT---SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDL  488 (655)
Q Consensus       448 -~~Hav----yg~---g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~  488 (655)
                       .+|+|    ||.   +.+|||||||||+.||++|||||.++....|++
T Consensus       118 ~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i  166 (174)
T smart00645      118 TLDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGI  166 (174)
T ss_pred             cccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCCCccCc
Confidence             48998    663   578999999999999999999999876233444

>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

Probab=100.00  E-value=1e-37  Score=312.57  Aligned_cols=180  Identities=31%  Similarity=0.550  Sum_probs=157.4

Q ss_pred             ceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcC--CCcCCCHHHHHHccCCC-----CCCCCCcHHHHHH-HH
Q psy11694        299 AFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGN--SLTELSVQQLVDCDMSN-----GGCNGGRMDDALQ-YI  370 (655)
Q Consensus       299 ~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~--~~~~lS~q~l~dC~~~~-----~gC~GG~~~~a~~-~~  370 (655)
                      .||||+.+ ++||+|||.||+|||||+++++|+++++++.  ..+.||+|+|++|....     .||.||.+..++. ++
T Consensus         1 ~~d~r~~~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~   79 (223)
T cd02619           1 SVDLRPLR-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLV   79 (223)
T ss_pred             CCcchhcC-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHH
Confidence            48999988 9999999999999999999999999999987  88999999999998653     6999999999998 77


Q ss_pred             HHcCCCCCCCCCCCCCCCCCCccccC---CCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC-cccccccEE
Q psy11694        371 IDNGGVVSDQAYPYKASESERGCLVG---EEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG-LFYYSGGVI  446 (655)
Q Consensus       371 ~~~~Gi~~e~~yPY~~~~~~~~C~~~---~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~-~~~Y~~Gi~  446 (655)
                      ..+ |+++|.+|||.....  .|...   ......+++..|..+...++++||++|+++|||+++|.+.. |+.|++|++
T Consensus        80 ~~~-Gi~~e~~~Py~~~~~--~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~~~~~~~~~~~~  156 (223)
T cd02619          80 ALK-GIPPEEDYPYGAESD--GEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVYSGFDRLKEGII  156 (223)
T ss_pred             HHc-CCCccccCCCCCCCC--CCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcccchhcccCccc
Confidence            666 999999999998876  44322   11225678899999887778999999999999999999987 889999986


Q ss_pred             -----e--------CCceE----EcC----CccEEEEecCCCCccCCCceEEecccC
Q psy11694        447 -----D--------LNQRL----YGT----SIPYWIVKNSWGSDWGEKVEDKVGSSG  482 (655)
Q Consensus       447 -----~--------~~Hav----yg~----g~~yWivkNSWG~~WGe~Gy~~i~~~~  482 (655)
                           .        .+|||    ||+    +.+|||||||||+.||++||+||.++.
T Consensus       157 ~~~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~  213 (223)
T cd02619         157 YEEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYED  213 (223)
T ss_pred             cccccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence                 2        78999    776    469999999999999999999998864

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str

>PTZ00462 Serine-repeat antigen protein; Provisional

Probab=100.00  E-value=1e-36  Score=343.89  Aligned_cols=182  Identities=25%  Similarity=0.462  Sum_probs=145.5

Q ss_pred             CCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCC--CCCCCCCc-HHHHHHHHHHcCCCCCCCCCCC
Q psy11694        308 ISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS--NGGCNGGR-MDDALQYIIDNGGVVSDQAYPY  384 (655)
Q Consensus       308 vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~--~~gC~GG~-~~~a~~~~~~~~Gi~~e~~yPY  384 (655)
                      ..||||||.||||||||++++||++++|+++..+.||+|+|+||+..  +.||.||. +..++.|+.+++|+++|++|||
T Consensus       544 ~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPY  623 (1004)
T PTZ00462        544 KIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLY  623 (1004)
T ss_pred             CCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCC
Confidence            57999999999999999999999999999999999999999999853  58999997 5556699988877999999999


Q ss_pred             CCCCCCCccccCCCC-----------------CceeeeeceEEcCCC----C----HHHHHHHHhhCCCeEEEEEcCCcc
Q psy11694        385 KASESERGCLVGEEE-----------------GFKVKVKEYSRIPYG----E----EEEMKKWVATRGPLSVGMNANGLF  439 (655)
Q Consensus       385 ~~~~~~~~C~~~~~~-----------------~~~~~i~~~~~v~~~----~----~~~ik~~l~~~gPV~v~i~~~~~~  439 (655)
                      .+......|......                 ...+.+.+|..+...    +    +++|+++|+..|||+|+|++..|+
T Consensus       624 t~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAsdf~  703 (1004)
T PTZ00462        624 NYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAENVL  703 (1004)
T ss_pred             ccCCCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEeehHH
Confidence            863222267643210                 012344566665432    1    468999999999999999997777


Q ss_pred             cc-cccEEe--------CCceE----EcC-------CccEEEEecCCCCccCCCceEEecccCCcccccc
Q psy11694        440 YY-SGGVID--------LNQRL----YGT-------SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLE  489 (655)
Q Consensus       440 ~Y-~~Gi~~--------~~Hav----yg~-------g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~  489 (655)
                      .| .+|||.        ++|||    ||.       +.+|||||||||+.|||+|||||.|.+...|++.
T Consensus       704 ~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~n~CGin  773 (1004)
T PTZ00462        704 GYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHCEDN  773 (1004)
T ss_pred             hhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCCCCCccc
Confidence            77 589864        68999    774       3589999999999999999999999665566653

>KOG1542|consensus

Probab=100.00  E-value=3.3e-35  Score=293.56  Aligned_cols=154  Identities=43%  Similarity=0.906  Sum_probs=141.4

Q ss_pred             cccccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCH
Q psy11694        495 PSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEE  574 (655)
Q Consensus       495 p~~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~  574 (655)
                      ..+|++||||+|+||+.++.||+||.+..|++|+++.+|+..|.+|||++.... .|.... ......|.+|..++. ++
T Consensus       198 ~g~LvsLSEQeLvDCD~~d~gC~GGl~~nA~~~~~~~gGL~~E~dYPY~g~~~~-~C~~~~-~~~~v~I~~f~~l~~-nE  274 (372)
T KOG1542|consen  198 TGKLVSLSEQELVDCDSCDNGCNGGLMDNAFKYIKKAGGLEKEKDYPYTGKKGN-QCHFDK-SKIVVSIKDFSMLSN-NE  274 (372)
T ss_pred             cCcccccchhhhhcccCcCCcCCCCChhHHHHHHHHhCCccccccCCccccCCC-ccccch-hhceEEEeccEecCC-CH
Confidence            358999999999999999999999999999999888889999999999998774 788776 667789999999986 99


Q ss_pred             HHHHHHHHhCCCEEEEEEccccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCCC
Q psy11694        575 EEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVM  654 (655)
Q Consensus       575 ~~ik~~i~~~GPV~~~~~~~~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy  654 (655)
                      ++|.+.|.++|||+|+|++...+.|.+||..|....|.+..++|||+|||||...-    ..+|||||||||+.|||+||
T Consensus       275 ~~ia~wLv~~GPi~vgiNa~~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~----~~PYWIVKNSWG~~WGE~GY  350 (372)
T KOG1542|consen  275 DQIAAWLVTFGPLSVGINAKPMQFYRGGVSCPSKYICSPKLLNHAVLLVGYGSSGY----EKPYWIVKNSWGTSWGEKGY  350 (372)
T ss_pred             HHHHHHHHhcCCeEEEEchHHHHHhcccccCCCcccCCccccCceEEEEeecCCCC----CCceEEEECCccccccccce
Confidence            99999999999999999998889999999997778899888999999999998752    56899999999999999999


Q ss_pred             C
Q psy11694        655 L  655 (655)
Q Consensus       655 ~  655 (655)
                      |
T Consensus       351 ~  351 (372)
T KOG1542|consen  351 Y  351 (372)
T ss_pred             E
Confidence            7

>KOG1544|consensus

Probab=100.00  E-value=1.1e-35  Score=291.45  Aligned_cols=246  Identities=29%  Similarity=0.514  Sum_probs=186.0

Q ss_pred             HHHHHHhcCCCCceeee-eCcCCCCChHHHHh-hcCCCCCCcccccCCCCCCCCCCCCcchhhhhhhcccCCCCCCCCCc
Q psy11694        222 EKAEDYQSEDSGTAVFG-VNKFFDLSESDLQQ-LTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEA  299 (655)
Q Consensus       222 ~~I~~~N~~~~~~~~~g-~N~FsDlt~eEf~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~  299 (655)
                      +.|++.|.. +-+|+++ ..+|-.||.++-.+ .||.-.+        +....        ++... ...+....+||+.
T Consensus       151 d~iE~in~G-~YgW~A~NYSaFWGmtL~DGiKyRLGTL~P--------s~sv~--------nMNEi-~~~l~p~~~LPE~  212 (470)
T KOG1544|consen  151 DMIEAINQG-NYGWQAGNYSAFWGMTLDDGIKYRLGTLRP--------SSSVM--------NMNEI-YTVLNPGEVLPEA  212 (470)
T ss_pred             HHHHHHhcC-CccccccchhhhhcccccccceeeecccCc--------hhhhh--------hHHhH-hhccCcccccchh
Confidence            467777763 3466654 45899999998777 5553222        11000        01000 0123335789999


Q ss_pred             eecCCC--CCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcC-C-CcCCCHHHHHHccCC-CCCCCCCcHHHHHHHHHHcC
Q psy11694        300 FDWRAE--GVISKVKEQGKCACCWAFSAVGVVEAMHAIQGN-S-LTELSVQQLVDCDMS-NGGCNGGRMDDALQYIIDNG  374 (655)
Q Consensus       300 ~Dwr~~--g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~-~-~~~lS~q~l~dC~~~-~~gC~GG~~~~a~~~~~~~~  374 (655)
                      ||-|++  +.+.|+.|||+|++.|||+++++...+++|+.. + ...||+|+|++|... ..||+||+++.|+=|+.+. 
T Consensus       213 F~As~KWp~liH~plDQgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h~q~GC~gG~lDRAWWYlRKr-  291 (470)
T KOG1544|consen  213 FEASEKWPNLIHEPLDQGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTHQQQGCRGGRLDRAWWYLRKR-  291 (470)
T ss_pred             hhhhhcCCccccCccccCCcccceeeeeehhccceeEEeeccccccccChHHhcchhhhhhccCccCcccchheeeecc-
Confidence            999986  899999999999999999999999999999864 3 467999999999854 5899999999999999887 


Q ss_pred             CCCCCCCCCCCCCCCC--Ccc------------------ccCCCCC-ceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEE
Q psy11694        375 GVVSDQAYPYKASESE--RGC------------------LVGEEEG-FKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGM  433 (655)
Q Consensus       375 Gi~~e~~yPY~~~~~~--~~C------------------~~~~~~~-~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i  433 (655)
                      |++...||||...+..  ..|                  .....+. ..++++--..|+. +|++|+++|+++|||.+.|
T Consensus       292 GvVsdhCYP~~~dQ~~~~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVSS-nE~eImkElM~NGPVQA~m  370 (470)
T KOG1544|consen  292 GVVSDHCYPFSGDQAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVSS-NEKEIMKELMENGPVQALM  370 (470)
T ss_pred             cccccccccccCCCCCCCCCceeeccccCcccccccCcCCCcccccCceeeecCCeeccC-CHHHHHHHHHhCCChhhhh
Confidence            9999999999765431  233                  3222221 2344444445554 7999999999999999999


Q ss_pred             EcCC-cccccccEEe---------------CCceE----EcC-------CccEEEEecCCCCccCCCceEEecccCCccc
Q psy11694        434 NANG-LFYYSGGVID---------------LNQRL----YGT-------SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTR  486 (655)
Q Consensus       434 ~~~~-~~~Y~~Gi~~---------------~~Hav----yg~-------g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~  486 (655)
                      .|-+ |+.|++|||.               ..|+|    ||+       ..+|||..||||+.|||+|||||.|+.|. |
T Consensus       371 ~VHEDFF~YkgGiY~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvNe-c  449 (470)
T KOG1544|consen  371 EVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVNE-C  449 (470)
T ss_pred             hhhhhhhhhccceeeccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccccc-h
Confidence            9987 9999999997               67999    665       35799999999999999999999998775 4


Q ss_pred             cc
Q psy11694        487 DL  488 (655)
Q Consensus       487 ~~  488 (655)
                      ++
T Consensus       450 dI  451 (470)
T KOG1544|consen  450 DI  451 (470)
T ss_pred             hh
Confidence            44

>PTZ00203 cathepsin L protease; Provisional

Probab=99.98  E-value=2.2e-32  Score=287.89  Aligned_cols=148  Identities=30%  Similarity=0.517  Sum_probs=115.9

Q ss_pred             cCchHHHHHHHHHHcCcccCChHHHHHHHHHHHHHHHHHHHHhccCCCCeeeeccCCCCCCHHHHH-HHhCCCCCCCccc
Q psy11694         38 LNSPVTRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSGTAVFEVNKFFDLSDSDLQ-QLTGLNLDSTLED  116 (655)
Q Consensus        38 ~~~~~~~f~~~~~~~~k~Y~~~~e~~~r~~~f~~n~~~i~~~n~~~~~~~~~g~N~fsDlt~~E~~-~~~g~~~~~~~~~  116 (655)
                      ...+..+|++||++|+|+|.+.+|+.+|+.||++|+++|++||++ +.+|+||+|+|||||+|||+ .+++...... ..
T Consensus        31 ~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~-~~~~~lg~N~FaDlT~eEf~~~~l~~~~~~~-~~  108 (348)
T PTZ00203         31 GTPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQAR-NPHARFGITKFFDLSEAEFAARYLNGAAYFA-AA  108 (348)
T ss_pred             ccHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCeEEeccccccCCHHHHHHHhcCCCcccc-cc
Confidence            345667899999999999999889999999999999999999976 45999999999999999994 4553211000 00


Q ss_pred             cCCCcCCCCCCCccchhhhhhhcccCCCCCCCCccccccccCccccccCCCcceeeecccchhhHHhhhhhcccchhhhh
Q psy11694        117 IQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELS  196 (655)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWr~~g~Vt~VkdQg~c~~~~a~~~~~~~e~~~~i~~~~l~~~~  196 (655)
                       ...........             .....++|++||||++|+||||||||.|||||||++++++|++..+..+.++.+|
T Consensus       109 -~~~~~~~~~~~-------------~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LS  174 (348)
T PTZ00203        109 -KQHAGQHYRKA-------------RADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLS  174 (348)
T ss_pred             -ccccccccccc-------------ccccccCCCCCcCCcCCCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCC
Confidence             00000000000             0011268999999999999999999999999999999999999999999999999


Q ss_pred             hhccc
Q psy11694        197 VQHHD  201 (655)
Q Consensus       197 ~q~~~  201 (655)
                      +|+.-
T Consensus       175 eQqLv  179 (348)
T PTZ00203        175 EQQLV  179 (348)
T ss_pred             HHHHH
Confidence            88763

>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

Probab=99.97  E-value=5.7e-31  Score=265.66  Aligned_cols=149  Identities=34%  Similarity=0.683  Sum_probs=120.5

Q ss_pred             cccccccccccCCCCC-CCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCC----------------CCCCCCCc---
Q psy11694        497 KLSRLATEKLVDCDMS-NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESE----------------RGCLVGEE---  556 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~-~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~----------------~~c~~~~~---  556 (655)
                      +.+.||+|+|++|+.. +.||.||++..|++|++++ |+++|++|||......                ..|.....   
T Consensus        49 ~~~~LS~Q~lidC~~~~~~gC~GG~~~~a~~~i~~~-G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~  127 (236)
T cd02620          49 ENVLLSAQDLLSCCSGCGDGCNGGYPDAAWKYLTTT-GVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTY  127 (236)
T ss_pred             CccccCHHHHHhhcCCCCCCCCCCCHHHHHHHHHhc-CCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCcccc
Confidence            4578999999999876 7899999999999999986 9999999999876531                12432211   


Q ss_pred             CCceEEEeeeEEcCCCCHHHHHHHHHhCCCEEEEEEc-cccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCC
Q psy11694        557 EGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNA-NGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTS  635 (655)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~ik~~i~~~GPV~~~~~~-~~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~  635 (655)
                      ....+++..+..+. .++++||.+|+++|||+++|++ ++|+.|++|||.   ..++...++|||+|||||+++     +
T Consensus       128 ~~~~~~~~~~~~~~-~~~~~ik~~l~~~GPv~v~i~~~~~f~~Y~~Giy~---~~~~~~~~~HaV~iVGyg~~~-----g  198 (236)
T cd02620         128 EEDKHKGKSAYSVP-SDETDIMKEIMTNGPVQAAFTVYEDFLYYKSGVYQ---HTSGKQLGGHAVKIIGWGVEN-----G  198 (236)
T ss_pred             ceeeeeecceeeeC-CHHHHHHHHHHHCCCeEEEEEechhhhhcCCcEEe---ecCCCCcCCeEEEEEEEeccC-----C
Confidence            11234455555554 3789999999999999999999 578899999997   335556689999999999875     6


Q ss_pred             CCEEEEEcCCCCCcCCCCCC
Q psy11694        636 IPYWIVKNSWGSDWGEKVML  655 (655)
Q Consensus       636 ~~ywivrNSWG~~WGe~Gy~  655 (655)
                      .+|||||||||++|||+|||
T Consensus       199 ~~YWivrNSWG~~WGe~Gy~  218 (236)
T cd02620         199 VPYWLAANSWGTDWGENGYF  218 (236)
T ss_pred             eeEEEEEeCCCCCCCCCcEE
Confidence            78999999999999999997

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane

>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

Probab=99.97  E-value=1.2e-30  Score=263.91  Aligned_cols=145  Identities=30%  Similarity=0.624  Sum_probs=118.6

Q ss_pred             ccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCC-----------C---cCCceEEE
Q psy11694        498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVG-----------E---EEGFKVKV  563 (655)
Q Consensus       498 ~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~-----------~---~~~~~~~~  563 (655)
                      ..+||+|+|++|+. +.||.||++..|++|++++ |+++|++|||.....  .|...           +   .....+++
T Consensus        54 ~~~lS~Q~lldC~~-~~gC~GG~~~~a~~~~~~~-Gl~~e~~yPY~~~~~--~C~~~~~~~~c~~~~~c~~~~~~~~~~i  129 (239)
T cd02698          54 SVYLSVQVVIDCAG-GGSCHGGDPGGVYEYAHKH-GIPDETCNPYQAKDG--ECNPFNRCGTCNPFGECFAIKNYTLYFV  129 (239)
T ss_pred             CcccCHHHHHhCCC-CCCccCcCHHHHHHHHHHc-CcCCCCeeCCcCCCC--CCcCCCCCCCcccCcccccccccceEEe
Confidence            57899999999987 7899999999999999985 999999999987644  33210           0   01224567


Q ss_pred             eeeEEcCCCCHHHHHHHHHhCCCEEEEEEcc-ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEE
Q psy11694        564 KEYSRIPYGEEEEMKKWVATRGPLSVGMNAN-GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVK  642 (655)
Q Consensus       564 ~~~~~~~~~~~~~ik~~i~~~GPV~~~~~~~-~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivr  642 (655)
                      ..|..++  +.++||++|+++|||+++|++. +|+.|++|||+.   .+....++|||+|||||++.+    +++|||||
T Consensus       130 ~~~~~~~--~~~~i~~~l~~~GPV~v~i~~~~~f~~Y~~GIy~~---~~~~~~~~HaV~IVGyG~~~~----g~~YWiik  200 (239)
T cd02698         130 SDYGSVS--GRDKMMAEIYARGPISCGIMATEALENYTGGVYKE---YVQDPLINHIISVAGWGVDEN----GVEYWIVR  200 (239)
T ss_pred             eeceecC--CHHHHHHHHHHcCCEEEEEEecccccccCCeEEcc---CCCCCcCCeEEEEEEEEecCC----CCEEEEEE
Confidence            7777774  5789999999999999999995 688999999973   233456799999999998642    67899999


Q ss_pred             cCCCCCcCCCCCC
Q psy11694        643 NSWGSDWGEKVML  655 (655)
Q Consensus       643 NSWG~~WGe~Gy~  655 (655)
                      ||||++|||+|||
T Consensus       201 NSWG~~WGe~Gy~  213 (239)
T cd02698         201 NSWGEPWGERGWF  213 (239)
T ss_pred             cCCCcccCcCceE
Confidence            9999999999997

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.

>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

Probab=99.97  E-value=1.4e-30  Score=264.32  Aligned_cols=152  Identities=31%  Similarity=0.625  Sum_probs=120.9

Q ss_pred             ccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCC-CCCCCCCCCCCcCCceEEEeeeEEcC----CC
Q psy11694        498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKA-SESERGCLVGEEEGFKVKVKEYSRIP----YG  572 (655)
Q Consensus       498 ~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~-~~~~~~c~~~~~~~~~~~~~~~~~~~----~~  572 (655)
                      ...||+|+|++|...+.||+||++..|++|+.+. |+++|++|||.. ...  .|.........+++..|..+.    ..
T Consensus        55 ~~~lS~q~l~dC~~~~~GC~GG~~~~a~~~~~~~-Gi~~e~~yPY~~~~~~--~C~~~~~~~~~~~~~~~~~i~~~~~~~  131 (243)
T cd02621          55 QPILSPQHVLSCSQYSQGCDGGFPFLVGKFAEDF-GIVTEDYFPYTADDDR--PCKASPSECRRYYFSDYNYVGGCYGCT  131 (243)
T ss_pred             CcccCHHHhhhhcCCCCCCCCCCHHHHHHHHHhc-CcCCCceeCCCCCCCC--CCCCCccccccccccceeEcccccccC
Confidence            5789999999998777899999999999999886 999999999987 433  676543122334555555542    35


Q ss_pred             CHHHHHHHHHhCCCEEEEEEc-cccccccCCeeecCC--CCCCC--------cccCeEEEEEEEecccCCCCCCCCEEEE
Q psy11694        573 EEEEMKKWVATRGPLSVGMNA-NGLFYYSGGVIDLNQ--RLCNP--------KAQNHALIIVGYGEEEKKDGTSIPYWIV  641 (655)
Q Consensus       573 ~~~~ik~~i~~~GPV~~~~~~-~~~~~y~~Gi~~~~~--~~~~~--------~~~~HaV~iVGyg~~~~~~~~~~~ywiv  641 (655)
                      ++++||++|+++|||+++|++ ++|..|++|||..+.  ..|+.        ..++|||+|||||++..   .+.+||||
T Consensus       132 ~~~~ik~~i~~~GPv~v~~~~~~~F~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~---~g~~YWii  208 (243)
T cd02621         132 NEDEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEI---KGEKYWIV  208 (243)
T ss_pred             CHHHHHHHHHHcCCEEEEEEecccccccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCC---CCCcEEEE
Confidence            789999999999999999999 478899999997421  01322        25799999999998641   25689999


Q ss_pred             EcCCCCCcCCCCCC
Q psy11694        642 KNSWGSDWGEKVML  655 (655)
Q Consensus       642 rNSWG~~WGe~Gy~  655 (655)
                      |||||++|||+|||
T Consensus       209 rNSWG~~WGe~Gy~  222 (243)
T cd02621         209 KNSWGSSWGEKGYF  222 (243)
T ss_pred             EcCCCCCCCcCCeE
Confidence            99999999999997

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc

>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

Probab=99.97  E-value=2.2e-30  Score=257.41  Aligned_cols=148  Identities=42%  Similarity=0.887  Sum_probs=128.1

Q ss_pred             cccccccccccCCCCC-CCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHH
Q psy11694        497 KLSRLATEKLVDCDMS-NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEE  575 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~-~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~  575 (655)
                      ...+||+|+|++|... +.+|.||++..|++++.+. |+++|++|||.....  .|.... ....+++.+|..+...+++
T Consensus        43 ~~~~lS~q~l~~c~~~~~~gC~GG~~~~a~~~~~~~-Gi~~e~~yPY~~~~~--~C~~~~-~~~~~~i~~~~~i~~~~~~  118 (210)
T cd02248          43 KLVSLSEQQLVDCSTSGNNGCNGGNPDNAFEYVKNG-GLASESDYPYTGKDG--TCKYNS-SKVGAKITGYSNVPPGDEE  118 (210)
T ss_pred             CCcccCHHHHhccCCCCCCCCCCCCHHHhHHHHHHC-CcCccccCCccCCCC--CccCCC-CcccEEEeeEEEcCCCcHH
Confidence            3567999999999875 7899999999999998875 999999999998654  676654 3567899999999877799


Q ss_pred             HHHHHHHhCCCEEEEEEcc-ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCCC
Q psy11694        576 EMKKWVATRGPLSVGMNAN-GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVM  654 (655)
Q Consensus       576 ~ik~~i~~~GPV~~~~~~~-~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy  654 (655)
                      +||++|+++|||+++|.+. +|..|++|||..  ..+....++|||+|||||++.     +.+|||||||||++||++||
T Consensus       119 ~ik~~l~~~gPV~~~~~~~~~f~~y~~Giy~~--~~~~~~~~~Hav~iVGy~~~~-----~~~ywiv~NSWG~~WG~~Gy  191 (210)
T cd02248         119 ALKAALANYGPVSVAIDASSSFQFYKGGIYSG--PCCSNTNLNHAVLLVGYGTEN-----GVDYWIVKNSWGTSWGEKGY  191 (210)
T ss_pred             HHHHHHhhcCCEEEEEecCcccccCCCCceeC--CCCCCCcCCEEEEEEEEeecC-----CceEEEEEcCCCCccccCcE
Confidence            9999999999999999995 788999999973  223356689999999999986     66899999999999999999


Q ss_pred             C
Q psy11694        655 L  655 (655)
Q Consensus       655 ~  655 (655)
                      |
T Consensus       192 ~  192 (210)
T cd02248         192 I  192 (210)
T ss_pred             E
Confidence            6

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h

>PTZ00021 falcipain-2; Provisional

Probab=99.97  E-value=1.4e-30  Score=281.65  Aligned_cols=150  Identities=39%  Similarity=0.780  Sum_probs=124.6

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHH
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEE  576 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  576 (655)
                      .+++||+|+|+||+..+.||.||++..|++|+.++.|+++|++|||.+... ..|.... ....+++.+|..++   .+.
T Consensus       309 ~~v~LSeQqLVDCs~~n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~-~~C~~~~-~~~~~~i~~y~~i~---~~~  383 (489)
T PTZ00021        309 ELVSLSEQELVDCSFKNNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTP-ELCNIDR-CKEKYKIKSYVSIP---EDK  383 (489)
T ss_pred             CCcccCHHHHhhhccCCCCCCCcchHhhhhhhhhccccCcccccCccCCCC-Ccccccc-ccccceeeeEEEec---HHH
Confidence            467899999999987788999999999999998877999999999998632 2686533 23457888998886   478


Q ss_pred             HHHHHHhCCCEEEEEEc-cccccccCCeeecCCCCCCCcccCeEEEEEEEecccCC-----CCCCCCEEEEEcCCCCCcC
Q psy11694        577 MKKWVATRGPLSVGMNA-NGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKK-----DGTSIPYWIVKNSWGSDWG  650 (655)
Q Consensus       577 ik~~i~~~GPV~~~~~~-~~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~-----~~~~~~ywivrNSWG~~WG  650 (655)
                      |+++|+..|||++++++ .+|+.|++|||.   ..|+. ..+|||+|||||+++..     .+++.+|||||||||++||
T Consensus       384 lk~al~~~GPVsv~i~a~~~f~~YkgGIy~---~~C~~-~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WG  459 (489)
T PTZ00021        384 FKEAIRFLGPISVSIAVSDDFAFYKGGIFD---GECGE-EPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWG  459 (489)
T ss_pred             HHHHHHhcCCeEEEEEeecccccCCCCcCC---CCCCC-ccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcc
Confidence            99999999999999999 478899999996   45764 37999999999976421     1234689999999999999


Q ss_pred             CCCCC
Q psy11694        651 EKVML  655 (655)
Q Consensus       651 e~Gy~  655 (655)
                      |+|||
T Consensus       460 E~GY~  464 (489)
T PTZ00021        460 EKGFI  464 (489)
T ss_pred             cCeEE
Confidence            99997

>KOG1543|consensus

Probab=99.96  E-value=8.3e-30  Score=266.61  Aligned_cols=146  Identities=40%  Similarity=0.781  Sum_probs=125.9

Q ss_pred             cccccccccccCCCC-CCCCCCCCCccchHHHHHHcCCCCC-CCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCH
Q psy11694        497 KLSRLATEKLVDCDM-SNGGCNGGRMDDALQYIIDNGGVVS-DQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEE  574 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~-~~~gC~GG~~~~a~~~~~~~~Gv~~-e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~  574 (655)
                      .+++||+|+|+||.. ++.||.||.+..|++|++++ |+++ +.+|||.....  .|..... .....+.++..++.. +
T Consensus       154 ~l~sLSeq~lvdC~~~~~~GC~GG~~~~A~~yi~~~-G~~t~~~~Ypy~~~~~--~C~~~~~-~~~~~~~~~~~~~~~-e  228 (325)
T KOG1543|consen  154 KLLSLSEQDLVDCCGECGDGCNGGEPKNAFKYIKKN-GGVTECENYPYIGKDG--TCKSNKK-DKTVTIKGFYNVPAN-E  228 (325)
T ss_pred             ccCccChhhhhhccCCCCCCcCCCCHHHHHHHHHHh-CCCCCCcCCCCcCCCC--CccCCCc-cceeEeeeeeecCcC-H
Confidence            578999999999987 48899999999999999998 6666 99999999887  7887663 556677778877765 9


Q ss_pred             HHHHHHHHhCCCEEEEEEc-cccccccCCeeecCCCCCCCc-ccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCC
Q psy11694        575 EEMKKWVATRGPLSVGMNA-NGLFYYSGGVIDLNQRLCNPK-AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK  652 (655)
Q Consensus       575 ~~ik~~i~~~GPV~~~~~~-~~~~~y~~Gi~~~~~~~~~~~-~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~  652 (655)
                      ++|+.+|+.+|||+++|++ .+|+.|++|||.   ..++.. .++|||+|||||. .    .+.+|||||||||+.|||+
T Consensus       229 ~~i~~~v~~~GPv~v~~~a~~~F~~Y~~GVy~---~~~~~~~~~~Hav~iVGyG~-~----~~~~YWivkNSWG~~WGe~  300 (325)
T KOG1543|consen  229 EAIAEAVAKNGPVSVAIDAYEDFSLYKGGVYA---EEKGDDKEGDHAVLIVGYGT-G----DGVDYWIVKNSWGTDWGEK  300 (325)
T ss_pred             HHHHHHHHhcCCeEEEEeehhhhhhccCceEe---CCCCCCCCCCceEEEEEEcC-C----CCceeEEEEcCCCCCcccC
Confidence            9999999999999999999 568899999998   333333 5899999999999 3    1678999999999999999


Q ss_pred             CCC
Q psy11694        653 VML  655 (655)
Q Consensus       653 Gy~  655 (655)
                      |||
T Consensus       301 Gy~  303 (325)
T KOG1543|consen  301 GYF  303 (325)
T ss_pred             ceE
Confidence            997

>PTZ00200 cysteine proteinase; Provisional

Probab=99.96  E-value=2.6e-29  Score=271.30  Aligned_cols=185  Identities=21%  Similarity=0.309  Sum_probs=126.2

Q ss_pred             eccchhHHHHHHHHHHHhhhcccccccCccCchHHHHHHHHHHcCcccCChHHHHHHHHHHHHHHHHHHHHhccCCCCee
Q psy11694          9 LGEKGLGYLHTFMIKVALLESNIFQTRGYLNSPVTRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSGTAV   88 (655)
Q Consensus         9 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~k~Y~~~~e~~~r~~~f~~n~~~i~~~n~~~~~~~~   88 (655)
                      +.++++.-|..|+-.-.++...     ....+...+|++||++|+|+|.+.+|+.+|+.||++|+++|++||.  ..+|+
T Consensus        95 ~~~~~~~~~~~~~~~~~i~~~~-----~~e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~--~~~y~  167 (448)
T PTZ00200         95 KRDSYVDELTRLFKDGYISDDP-----KLEFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKG--DEPYS  167 (448)
T ss_pred             HHHHHHHHHHHHhhCCCcCCCc-----cchHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcC--cCCeE
Confidence            3455666666555444444433     3333556789999999999999999999999999999999999995  45899


Q ss_pred             eeccCCCCCCHHHHH-HHhCCCCCCCccccCCCc--CC-CCCCCccchhhhh-h-hcccC-CCCCCCCccccccccCccc
Q psy11694         89 FEVNKFFDLSDSDLQ-QLTGLNLDSTLEDIQPSL--QA-PFSSNQTDTEMRA-F-QFNSL-RHGDDLPEAFDWRAEGVIS  161 (655)
Q Consensus        89 ~g~N~fsDlt~~E~~-~~~g~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~-~-~~~~~-~~~~~~P~~~DWr~~g~Vt  161 (655)
                      +|+|+|||||+|||+ .+++.+.+..........  .. ............. . ....+ +....+|++||||++|+||
T Consensus       168 lgiN~FsDlT~eEF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~vt  247 (448)
T PTZ00200        168 KEINKFSDLTEEEFRKLFPVIKVPPKSNSTSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVT  247 (448)
T ss_pred             EeccccccCCHHHHHHHhccCCCcccccccccccccccccccccccccccccccccccccccccccCCCCccCCCCCCCC
Confidence            999999999999995 455543211100000000  00 0000000000000 0 00000 1112369999999999999


Q ss_pred             cccCCC-cceeeecccchhhHHhhhhhcccchhhhhhhcc
Q psy11694        162 KVKEQG-KCACCWAFSAVGVVEAMHAIQGNNLTELSVQHH  200 (655)
Q Consensus       162 ~VkdQg-~c~~~~a~~~~~~~e~~~~i~~~~l~~~~~q~~  200 (655)
                      |||||| .|||||||++++++|++..+..+.++.+|+|+.
T Consensus       248 pVkdQG~~CGSCWAFat~~aiEs~~~i~~~~~~~LSeQqL  287 (448)
T PTZ00200        248 KVKDQGLNCGSCWAFSSVGSVESLYKIYRDKSVDLSEQEL  287 (448)
T ss_pred             CcccCCCccchHHHHhHHHHHHHHHHHhcCCCeecCHHHH
Confidence            999999 999999999999999999999888888888875

>PTZ00049 cathepsin C-like protein; Provisional

Probab=99.95  E-value=3.7e-28  Score=267.98  Aligned_cols=152  Identities=30%  Similarity=0.624  Sum_probs=117.8

Q ss_pred             ccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCc-----------------------
Q psy11694        500 RLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEE-----------------------  556 (655)
Q Consensus       500 ~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~-----------------------  556 (655)
                      .||+|+|++|+..+.||.||++..|++|+.+. ||++|++|||.+...  .|+....                       
T Consensus       441 ~LS~QqLLDCs~~nqGC~GG~~~~A~kya~~~-GI~tEscYPY~a~~g--~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~  517 (693)
T PTZ00049        441 LLSIQTVLSCSFYDQGCNGGFPYLVSKMAKLQ-GIPLDKVFPYTATEQ--TCPYQVDQSANSMNGSANLRQINAVFFSSE  517 (693)
T ss_pred             CcCHHHhcccCCCCCCcCCCcHHHHHHHHHHC-CCCcCCccCCcCCCC--CCCCCCCCcccccccccccccccccccccc
Confidence            79999999998778899999999999999885 999999999987644  4532110                       


Q ss_pred             ---------------CCceEEEeeeEEcC-------CCCHHHHHHHHHhCCCEEEEEEcc-ccccccCCeeecCC--C--
Q psy11694        557 ---------------EGFKVKVKEYSRIP-------YGEEEEMKKWVATRGPLSVGMNAN-GLFYYSGGVIDLNQ--R--  609 (655)
Q Consensus       557 ---------------~~~~~~~~~~~~~~-------~~~~~~ik~~i~~~GPV~~~~~~~-~~~~y~~Gi~~~~~--~--  609 (655)
                                     ....+.++.|..+.       ..++++|+++|+.+|||+++|++. +|+.|++|||..+.  +  
T Consensus       518 ~~~~~~~~~~~~~~~~~~r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~~dF~~YksGVY~~~~~~h~~  597 (693)
T PTZ00049        518 TQSDMHADFEAPISSEPARWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHAR  597 (693)
T ss_pred             ccccccccccccccccccceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEechhhhcCCCccccCccccccc
Confidence                           01123456666653       247899999999999999999994 78899999997321  1  


Q ss_pred             CCCC--------------cccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCCCC
Q psy11694        610 LCNP--------------KAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVML  655 (655)
Q Consensus       610 ~~~~--------------~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy~  655 (655)
                      .|..              ...+|||+|||||.+. .+|.+.+|||||||||+.||++|||
T Consensus       598 ~C~~d~~~~~~~~~~~G~e~~NHAVlIVGwG~d~-enG~~~~YWIVRNSWGt~WGenGYf  656 (693)
T PTZ00049        598 RCTVDLPKHNGVYNITGWEKVNHAIVLVGWGEEE-INGKLYKYWIGRNSWGKNWGKEGYF  656 (693)
T ss_pred             ccCCccccccccccccccccCceEEEEEEecccc-CCCcccCEEEEECCCCCCcccCceE
Confidence            2422              1369999999999753 1232357999999999999999997

>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification

Probab=99.95  E-value=1.6e-28  Score=245.34  Aligned_cols=152  Identities=36%  Similarity=0.767  Sum_probs=126.0

Q ss_pred             ccccccccccccCCCC-CCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCH
Q psy11694        496 SKLSRLATEKLVDCDM-SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEE  574 (655)
Q Consensus       496 ~~~~~ls~q~l~~C~~-~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~  574 (655)
                      ....+||+|+|++|.. .+.+|.||++..|+++++++.|+++|++|||..... ..|..........++..|..+...++
T Consensus        45 ~~~~~lS~q~l~~~~~~~~~~c~gg~~~~a~~~~~~~~Gi~~e~~~pY~~~~~-~~c~~~~~~~~~~~i~~~~~~~~~~~  123 (219)
T PF00112_consen   45 GKNVDLSEQYLIDCSNKYNKGCDGGSPFDALKYIKNNNGIVTEEDYPYNGNEN-PTCKSKKSNSYYVKIKGYGKVKDNDI  123 (219)
T ss_dssp             SSCEEB-HHHHHHHSTGTSSTTBBBEHHHHHHHHHHHTSBEBTTTS--SSSSS-CSSCHSGGGEEEBEESEEEEEESTCH
T ss_pred             ccccccccccccccccccccccccCcccccceeecccCccccccccccccccc-ccccccccccccccccccccccccch
Confidence            3568999999999987 567999999999999999955999999999997762 26776542222478999999988789


Q ss_pred             HHHHHHHHhCCCEEEEEEccc--cccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCC
Q psy11694        575 EEMKKWVATRGPLSVGMNANG--LFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK  652 (655)
Q Consensus       575 ~~ik~~i~~~GPV~~~~~~~~--~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~  652 (655)
                      ++||++|+++|||++++.+.+  |..|++|||..+  .+....++|||+|||||++.     +.+|||||||||++||++
T Consensus       124 ~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~--~~~~~~~~Hav~iVGy~~~~-----~~~~wiv~NSWG~~WG~~  196 (219)
T PF00112_consen  124 EDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDPP--DCSNESGGHAVLIVGYDDEN-----GKGYWIVKNSWGTDWGDN  196 (219)
T ss_dssp             HHHHHHHHHHSSEEEEEEEESHHHHTEESSEECST--SSSSSSEEEEEEEEEEEEET-----TEEEEEEE-SBTTTSTBT
T ss_pred             hHHHHHHhhCceeeeeeeccccccccccceeeecc--cccccccccccccccccccc-----ceeeEeeehhhCCccCCC
Confidence            999999999999999999943  778999999843  45567899999999999987     678999999999999999


Q ss_pred             CCC
Q psy11694        653 VML  655 (655)
Q Consensus       653 Gy~  655 (655)
                      |||
T Consensus       197 Gy~  199 (219)
T PF00112_consen  197 GYF  199 (219)
T ss_dssp             TEE
T ss_pred             eEE
Confidence            996

; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....

>PTZ00364 dipeptidyl-peptidase I precursor; Provisional

Probab=99.95  E-value=1.5e-27  Score=261.12  Aligned_cols=153  Identities=20%  Similarity=0.483  Sum_probs=118.0

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCc--ccCCCCCC-CCCCCCCcCCceEEEeeeEEcC---
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAY--PYKASESE-RGCLVGEEEGFKVKVKEYSRIP---  570 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~y--PY~~~~~~-~~c~~~~~~~~~~~~~~~~~~~---  570 (655)
                      +...||+|+|+||+..+.||+||++..|++|+.++ |+++|++|  ||...+.. ..|.... ....++++.|..+.   
T Consensus       260 ~~~~LS~QqLVDCs~~n~GCdGG~p~~A~~yi~~~-GI~tE~dY~~PY~~~dg~~~~Ck~~~-~~~~y~~~~~~~I~gyy  337 (548)
T PTZ00364        260 QQTFLSARHVLDCSQYGQGCAGGFPEEVGKFAETF-GILTTDSYYIPYDSGDGVERACKTRR-PSRRYYFTNYGPLGGYY  337 (548)
T ss_pred             cccCcCHHHHhcccCCCCCCCCCcHHHHHHHHHhC-CcccccccCCCCCCCCCCCCCCCCCc-ccceeeeeeeEEeccee
Confidence            36789999999998778899999999999999885 99999999  99876441 2476433 23334444443331   


Q ss_pred             --CCCHHHHHHHHHhCCCEEEEEEc-cccccccCCeeecC-----C-CCC----------CCcccCeEEEEEEEecccCC
Q psy11694        571 --YGEEEEMKKWVATRGPLSVGMNA-NGLFYYSGGVIDLN-----Q-RLC----------NPKAQNHALIIVGYGEEEKK  631 (655)
Q Consensus       571 --~~~~~~ik~~i~~~GPV~~~~~~-~~~~~y~~Gi~~~~-----~-~~~----------~~~~~~HaV~iVGyg~~~~~  631 (655)
                        ..++++|+.+|+.+|||+++|++ .+|+.|++|||...     . ..|          .....+|||+|||||.+.+ 
T Consensus       338 ~~~~~e~~I~~eI~~~GPVsVaIda~~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~-  416 (548)
T PTZ00364        338 GAVTDPDEIIWEIYRHGPVPASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDEN-  416 (548)
T ss_pred             ecCCcHHHHHHHHHHcCCeEEEEEechHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCC-
Confidence              14788999999999999999999 57889999987511     1 011          1235799999999997531 


Q ss_pred             CCCCCCEEEEEcCCCC--CcCCCCCC
Q psy11694        632 DGTSIPYWIVKNSWGS--DWGEKVML  655 (655)
Q Consensus       632 ~~~~~~ywivrNSWG~--~WGe~Gy~  655 (655)
                         +.+|||||||||+  +|||+|||
T Consensus       417 ---G~~YWIVKNSWGt~~~WGE~GYf  439 (548)
T PTZ00364        417 ---GGDYWLVLDPWGSRRSWCDGGTR  439 (548)
T ss_pred             ---CceEEEEECCCCCCCCcccCCeE
Confidence               6789999999999  99999997

>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

Probab=99.94  E-value=1.5e-26  Score=231.68  Aligned_cols=153  Identities=30%  Similarity=0.530  Sum_probs=124.6

Q ss_pred             cccccccccccCCCCCC-----CCCCCCCccchHH-HHHHcCCCCCCCCcccCCCCCCCCCCC---CCcCCceEEEeeeE
Q psy11694        497 KLSRLATEKLVDCDMSN-----GGCNGGRMDDALQ-YIIDNGGVVSDQAYPYKASESERGCLV---GEEEGFKVKVKEYS  567 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~-----~gC~GG~~~~a~~-~~~~~~Gv~~e~~yPY~~~~~~~~c~~---~~~~~~~~~~~~~~  567 (655)
                      ..++||+|+|++|....     .+|.||.+..++. ++.++ |+++|.+|||.....  .|..   ........++..|.
T Consensus        42 ~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~~~~-Gi~~e~~~Py~~~~~--~~~~~~~~~~~~~~~~~~~y~  118 (223)
T cd02619          42 EYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLVALK-GIPPEEDYPYGAESD--GEEPKSEAALNAAKVKLKDYR  118 (223)
T ss_pred             ccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHHHHc-CCCccccCCCCCCCC--CCCCCCccchhhcceeeccee
Confidence            45789999999997542     6999999999998 77764 999999999998766  3332   12244567899999


Q ss_pred             EcCCCCHHHHHHHHHhCCCEEEEEEc-cccccccCCeee---cCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEc
Q psy11694        568 RIPYGEEEEMKKWVATRGPLSVGMNA-NGLFYYSGGVID---LNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKN  643 (655)
Q Consensus       568 ~~~~~~~~~ik~~i~~~GPV~~~~~~-~~~~~y~~Gi~~---~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrN  643 (655)
                      .+...++++||++|+++|||+++|.+ ..|+.|++|++.   .....+....++|||+|||||++..   .+.+||||||
T Consensus       119 ~~~~~~~~~ik~aL~~~gPv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~ivGy~~~~~---~~~~~~i~~N  195 (223)
T cd02619         119 RVLKNNIEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYV---EGKGAFIVKN  195 (223)
T ss_pred             EeCchhHHHHHHHHHHCCCEEEEEEcccchhcccCccccccccccccCCCccCCeEEEEEeecCCCC---CCCCEEEEEe
Confidence            99877899999999999999999999 467789999862   1233455667899999999998752   2568999999


Q ss_pred             CCCCCcCCCCCC
Q psy11694        644 SWGSDWGEKVML  655 (655)
Q Consensus       644 SWG~~WGe~Gy~  655 (655)
                      |||+.||++||+
T Consensus       196 SwG~~wg~~Gy~  207 (223)
T cd02619         196 SWGTDWGDNGYG  207 (223)
T ss_pred             CCCCccccCCEE
Confidence            999999999996

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str

>PTZ00462 Serine-repeat antigen protein; Provisional

Probab=99.94  E-value=1.2e-26  Score=262.82  Aligned_cols=157  Identities=26%  Similarity=0.490  Sum_probs=118.5

Q ss_pred             cccccccccccCCCCC--CCCCCCCC-ccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcC----------------
Q psy11694        497 KLSRLATEKLVDCDMS--NGGCNGGR-MDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEE----------------  557 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~--~~gC~GG~-~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~----------------  557 (655)
                      .+..||+|+|++|+..  +.||.||. +..++.|+.+++|+++|++|||........|+.....                
T Consensus       575 ~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPYt~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~  654 (1004)
T PTZ00462        575 EPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLYNYTKVGEDCPDEEDHWMNLLDHGKILNHNKK  654 (1004)
T ss_pred             CCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCCccCCCCCCCCCCccccccccccccccccccc
Confidence            4678999999999753  57999997 4566699988767999999999864222257642210                


Q ss_pred             -CceEEEeeeEEcCCC----C----HHHHHHHHHhCCCEEEEEEccccccc-cCCeeecCCCCCCCcccCeEEEEEEEec
Q psy11694        558 -GFKVKVKEYSRIPYG----E----EEEMKKWVATRGPLSVGMNANGLFYY-SGGVIDLNQRLCNPKAQNHALIIVGYGE  627 (655)
Q Consensus       558 -~~~~~~~~~~~~~~~----~----~~~ik~~i~~~GPV~~~~~~~~~~~y-~~Gi~~~~~~~~~~~~~~HaV~iVGyg~  627 (655)
                       ...+.+.+|..+...    +    ++.||++|+..|||+++|++.+|+.| .+|||.  ...|+....+|||+|||||.
T Consensus       655 ~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAsdf~~Y~~sGIyv--~~~Cgs~~~nHAVlIVGYGt  732 (1004)
T PTZ00462        655 EPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAENVLGYEFNGKKV--QNLCGDDTADHAVNIVGYGN  732 (1004)
T ss_pred             ccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEeehHHhhhcCCccc--cCCCCCCcCCceEEEEEecc
Confidence             112334566666432    1    47899999999999999999888888 589875  34577666799999999997


Q ss_pred             ccCCCCCCCCEEEEEcCCCCCcCCCCCC
Q psy11694        628 EEKKDGTSIPYWIVKNSWGSDWGEKVML  655 (655)
Q Consensus       628 ~~~~~~~~~~ywivrNSWG~~WGe~Gy~  655 (655)
                      +.+.++.+.+|||||||||++|||+|||
T Consensus       733 ~in~eg~gk~YWIVRNSWGt~WGEnGYF  760 (1004)
T PTZ00462        733 YINDEDEKKSYWIVRNSWGKYWGDEGYF  760 (1004)
T ss_pred             cccccCCCCceEEEEcCCCCCcCCCeEE
Confidence            6433344678999999999999999997

>KOG1544|consensus

Probab=99.93  E-value=5.3e-26  Score=223.62  Aligned_cols=155  Identities=32%  Similarity=0.649  Sum_probs=122.6

Q ss_pred             cccccccccCCCCC-CCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCC--CCC------------------CCCCCcC
Q psy11694        499 SRLATEKLVDCDMS-NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASES--ERG------------------CLVGEEE  557 (655)
Q Consensus       499 ~~ls~q~l~~C~~~-~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~--~~~------------------c~~~~~~  557 (655)
                      ..||.|+|++|..- ..||.||.+.+|+=||.+. |++...||||.....  +.+                  |+....+
T Consensus       258 ~~LSpQnLlSC~~h~q~GC~gG~lDRAWWYlRKr-GvVsdhCYP~~~dQ~~~~~~C~m~sR~~grgkRqat~~CPn~~~~  336 (470)
T KOG1544|consen  258 PVLSPQNLLSCDTHQQQGCRGGRLDRAWWYLRKR-GVVSDHCYPFSGDQAGPAPPCMMHSRAMGRGKRQATAHCPNSYVN  336 (470)
T ss_pred             cccChHHhcchhhhhhccCccCcccchheeeecc-cccccccccccCCCCCCCCCceeeccccCcccccccCcCCCcccc
Confidence            47899999999765 5699999999999999986 999999999986532  122                  4432211


Q ss_pred             C-ceEEEeeeEEcCCCCHHHHHHHHHhCCCEEEEEEc-cccccccCCeeecCCCCCC-----CcccCeEEEEEEEecccC
Q psy11694        558 G-FKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNA-NGLFYYSGGVIDLNQRLCN-----PKAQNHALIIVGYGEEEK  630 (655)
Q Consensus       558 ~-~~~~~~~~~~~~~~~~~~ik~~i~~~GPV~~~~~~-~~~~~y~~Gi~~~~~~~~~-----~~~~~HaV~iVGyg~~~~  630 (655)
                      . ..++.+.-.++ ++++++|+++||++|||.+.|.| ++||.|++|||.+......     ...+.|+|.|.|||.+..
T Consensus       337 Sn~iyq~tPPYrV-SSnE~eImkElM~NGPVQA~m~VHEDFF~YkgGiY~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~  415 (470)
T KOG1544|consen  337 SNDIYQVTPPYRV-SSNEKEIMKELMENGPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETL  415 (470)
T ss_pred             cCceeeecCCeec-cCCHHHHHHHHHhCCChhhhhhhhhhhhhhccceeeccccccCCchhhhhcccceEEEeecccccC
Confidence            1 12222222223 25899999999999999999999 8899999999985432221     256899999999999988


Q ss_pred             CCCCCCCEEEEEcCCCCCcCCCCCC
Q psy11694        631 KDGTSIPYWIVKNSWGSDWGEKVML  655 (655)
Q Consensus       631 ~~~~~~~ywivrNSWG~~WGe~Gy~  655 (655)
                      ++|...+|||..||||+.|||+|||
T Consensus       416 ~~G~~~KyW~aANSWG~~WGE~GYF  440 (470)
T KOG1544|consen  416 PDGRTLKYWTAANSWGPAWGERGYF  440 (470)
T ss_pred             CCCCeeEEEEeecccccccccCceE
Confidence            8899999999999999999999998

>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=4.8e-25  Score=223.57  Aligned_cols=205  Identities=21%  Similarity=0.334  Sum_probs=129.2

Q ss_pred             CCCCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHHc
Q psy11694        294 DDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDN  373 (655)
Q Consensus       294 ~~lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~  373 (655)
                      ..+|+.||||+.|.|+||||||.|||||||++++++|+.+.-..  ...+|+..+                      +..
T Consensus        97 ~s~~~~fd~r~~g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm----------------------~~l  152 (372)
T COG4870          97 ASLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNM----------------------KNL  152 (372)
T ss_pred             ccchhheeeeccCCcccccccCcccceEeeeehhhhhheecccc--cccccccch----------------------hhh
Confidence            45899999999999999999999999999999999999754221  222332211                      112


Q ss_pred             CCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCCcccccccEEeCCceEE
Q psy11694        374 GGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLY  453 (655)
Q Consensus       374 ~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~~~~Y~~Gi~~~~Havy  453 (655)
                      .|++.|+.+||...++...|-..                                                         
T Consensus       153 l~~~ye~~fd~~~~d~g~~~m~~---------------------------------------------------------  175 (372)
T COG4870         153 LGVPYEKGFDYTSNDGGNADMSA---------------------------------------------------------  175 (372)
T ss_pred             cCCCccccCCCccccCCcccccc---------------------------------------------------------
Confidence            27788888888754441111100                                                         


Q ss_pred             cCCccEEEEecCCCCccCCCceEEecccCCccccccccCCccccccccccccccCCCCCCCCCCCCCccchHHHHHHcCC
Q psy11694        454 GTSIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGG  533 (655)
Q Consensus       454 g~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~~~gv~p~~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~G  533 (655)
                                                                                ...-|.+|.+..+.+.+..+ +
T Consensus       176 ----------------------------------------------------------a~l~e~sgpv~et~d~y~~~-s  196 (372)
T COG4870         176 ----------------------------------------------------------AYLTEWSGPVYETDDPYSEN-S  196 (372)
T ss_pred             ----------------------------------------------------------ccccccCCcchhhcCccccc-c
Confidence                                                                      00013334444343444343 6


Q ss_pred             CCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHHHHHHHHhCCCEEEEEEcccccccc--CCeeecCCCCC
Q psy11694        534 VVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYS--GGVIDLNQRLC  611 (655)
Q Consensus       534 v~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ik~~i~~~GPV~~~~~~~~~~~y~--~Gi~~~~~~~~  611 (655)
                      ...++++|+.....  .|...+        .....+   +.-.||+++..+|.+..+|.+.....+.  -+.+    .+.
T Consensus       197 ~~~~~~~p~~k~~~--~~~~i~--------~~~~~L---dnG~i~~~~~~yg~~s~~~~id~~~~~~~~~~~~----~~~  259 (372)
T COG4870         197 YFSPTNLPVTKHVQ--EAQIIP--------SRKKYL---DNGNIKAMFGFYGAVSSSMYIDATNSLGICIPYP----YVD  259 (372)
T ss_pred             ccCCcCCchhhccc--cceecc--------cchhhh---cccchHHHHhhhccccceeEEecccccccccCCC----CCC
Confidence            66667777776654  333222        111222   3334788888889888777764322222  2222    222


Q ss_pred             CCcccCeEEEEEEEecccCCC-----CCCCCEEEEEcCCCCCcCCCCCC
Q psy11694        612 NPKAQNHALIIVGYGEEEKKD-----GTSIPYWIVKNSWGSDWGEKVML  655 (655)
Q Consensus       612 ~~~~~~HaV~iVGyg~~~~~~-----~~~~~ywivrNSWG~~WGe~Gy~  655 (655)
                      ....++|||+||||||....+     .++.++||||||||++||++|||
T Consensus       260 s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYf  308 (372)
T COG4870         260 SGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYF  308 (372)
T ss_pred             ccccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceE
Confidence            226789999999999976432     34678999999999999999997

>smart00645 Pept_C1 Papain family cysteine protease

Probab=99.90  E-value=2.2e-24  Score=207.34  Aligned_cols=108  Identities=46%  Similarity=0.978  Sum_probs=91.9

Q ss_pred             ccccccccccCCCCC-CCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHH
Q psy11694        498 LSRLATEKLVDCDMS-NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEE  576 (655)
Q Consensus       498 ~~~ls~q~l~~C~~~-~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  576 (655)
                      ..+||+|+|++|... +.||.||++..|++|+.++.|+++|++|||..                                
T Consensus        45 ~~~lS~q~l~~C~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~~PY~~--------------------------------   92 (174)
T smart00645       45 LVSLSEQQLVDCSTGGNNGCNGGLPDNAFEYIKKNGGLETESCYPYTG--------------------------------   92 (174)
T ss_pred             ccccCHHHHhhhcCCCCCCCCCcCHHHHHHHHHHcCCcccccccCccc--------------------------------
Confidence            578999999999864 66999999999999999855999999999964                                


Q ss_pred             HHHHHHhCCCEEEEEEccccccccCCeeecCCCCCCCcccCeEEEEEEEecc-cCCCCCCCCEEEEEcCCCCCcCCCCCC
Q psy11694        577 MKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEE-EKKDGTSIPYWIVKNSWGSDWGEKVML  655 (655)
Q Consensus       577 ik~~i~~~GPV~~~~~~~~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~-~~~~~~~~~ywivrNSWG~~WGe~Gy~  655 (655)
                                 ++.+.+.+|+.|++|||..  ..|+...++|||+|||||.+ +     +++|||||||||+.|||+|||
T Consensus        93 -----------~~~~~~~~f~~Y~~Gi~~~--~~~~~~~~~Hav~ivGyg~~~~-----g~~yWii~NSwG~~WG~~G~~  154 (174)
T smart00645       93 -----------SVAIDASDFQFYKSGIYDH--PGCGSGTLDHAVLIVGYGTEEN-----GKDYWIVKNSWGTDWGENGYF  154 (174)
T ss_pred             -----------EEEEEcccccCCcCeEECC--CCCCCCcccEEEEEEEEeecCC-----CeeEEEEECCCCCCcccCeEE
Confidence                       4556666788999999973  24554457999999999976 3     668999999999999999996

>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC)

Probab=99.89  E-value=2.6e-23  Score=223.16  Aligned_cols=280  Identities=19%  Similarity=0.212  Sum_probs=157.1

Q ss_pred             CcCCCCCCCccHHHHHHHHHHHHHHHHh-cCCCcCCCHHHHHH----------------cc--C----------CCCCCC
Q psy11694        309 SKVKEQGKCACCWAFSAVGVVEAMHAIQ-GNSLTELSVQQLVD----------------CD--M----------SNGGCN  359 (655)
Q Consensus       309 tpVkdQg~CGsCwAfa~~~~le~~~~i~-~~~~~~lS~q~l~d----------------C~--~----------~~~gC~  359 (655)
                      .||+||+.-|.||.||+...||+.+..+ +...+.||+.+|+-                +.  .          .....+
T Consensus        55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~D  134 (437)
T cd00585          55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQND  134 (437)
T ss_pred             CCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcCC
Confidence            4899999999999999999999988774 45678999976664                22  1          134578


Q ss_pred             CCcHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCCcc
Q psy11694        360 GGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLF  439 (655)
Q Consensus       360 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~~~  439 (655)
                      ||....+...|.++ |+++.+.||-+..... +-.....  ...++..+       ...|..++.. +.-.-.+... -.
T Consensus       135 GGqw~m~~~li~KY-GvVPk~~~pet~~s~~-t~~~n~~--L~~kLr~~-------a~~lr~~~~~-~~~~~~l~~~-~~  201 (437)
T cd00585         135 GGQWDMLVNLIEKY-GLVPKSVMPESFNSEN-SRRLNYL--LNRKLRED-------ALELRKLVAK-GASKEEIEAK-KE  201 (437)
T ss_pred             CCchHHHHHHHHHc-CCCcccccCCCcCccc-hHHHHHH--HHHHHHHH-------HHHHHHHHhc-CCcHHHHHHH-HH
Confidence            99999999999888 9999999995433220 0000000  00000000       0011111110 0000000000 00


Q ss_pred             cccccEEeCCceEEcCCccEEEEecCCCCccCCCceEEecccCCccccccccCCccccccccccccccCCCCCCCCCCCC
Q psy11694        440 YYSGGVIDLNQRLYGTSIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLPSKLSRLATEKLVDCDMSNGGCNGG  519 (655)
Q Consensus       440 ~Y~~Gi~~~~Havyg~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~~~gv~p~~~~~ls~q~l~~C~~~~~gC~GG  519 (655)
                      -+...|                              .+|.        ..-.|..|. ..++.   ..|=+ ...-|.  
T Consensus       202 ~~~~~i------------------------------y~il--------~~~lG~pP~-~F~~~---y~dkd-~~~~~~--  236 (437)
T cd00585         202 EMLKEV------------------------------YRIL--------AIALGEPPE-KFDWE---YRDKD-KKYHEI--  236 (437)
T ss_pred             HHHHHH------------------------------HHHH--------HHHcCCCCc-eEEEE---EEeCC-CCeeeC--
Confidence            000000                              0000        011222231 11110   00100 011122  


Q ss_pred             CccchHHHHHHcCCCCCCCCc-----------ccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHHHH-HHHHhCCCE
Q psy11694        520 RMDDALQYIIDNGGVVSDQAY-----------PYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMK-KWVATRGPL  587 (655)
Q Consensus       520 ~~~~a~~~~~~~~Gv~~e~~y-----------PY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ik-~~i~~~GPV  587 (655)
                      -..++.+|.++..|+.. .+|           ||.....    .....+....+...|.+++.....++. ++|..++||
T Consensus       237 ~~~TP~~F~~~yv~~~~-~dyV~l~~~p~~~~p~~~~y~----ve~~~Nv~~g~~~~y~Nvp~d~l~~~~~~~L~~g~pV  311 (437)
T cd00585         237 KELTPLEFYKKYVKFDL-DDYVSLINDPRPDKPYNKLYT----VEYLGNVVGGRPILYLNVPMDVLKKAAIAQLKDGEPV  311 (437)
T ss_pred             CCcCHHHHHHHhcCCCc-cceEEEEeCCCCCCCCCceEE----EecCCcccccccceEEecCHHHHHHHHHHHHhcCCCE
Confidence            23588888888767554 333           2321111    111112333355678888655544433 577788899


Q ss_pred             EEEEEccccccccCCeeecCCC------------------CCCCcccCeEEEEEEEecccCCCCCCC-CEEEEEcCCCCC
Q psy11694        588 SVGMNANGLFYYSGGVIDLNQR------------------LCNPKAQNHALIIVGYGEEEKKDGTSI-PYWIVKNSWGSD  648 (655)
Q Consensus       588 ~~~~~~~~~~~y~~Gi~~~~~~------------------~~~~~~~~HaV~iVGyg~~~~~~~~~~-~ywivrNSWG~~  648 (655)
                      .+++++..++.|++||+++...                  .+..+..+|||+|||||.+..    |. .||+|+||||+.
T Consensus       312 ~~g~Dv~~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~~D~~----g~p~yw~VkNSWG~~  387 (437)
T cd00585         312 WFGCDVGKFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVDLDED----GKPVKWKVENSWGEK  387 (437)
T ss_pred             EEEEEcChhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEEecCC----CCcceEEEEcccCCC
Confidence            9999998888999999964321                  133456789999999997642    33 599999999999


Q ss_pred             cCCCCCC
Q psy11694        649 WGEKVML  655 (655)
Q Consensus       649 WGe~Gy~  655 (655)
                      ||++|||
T Consensus       388 ~G~~Gy~  394 (437)
T cd00585         388 VGKKGYF  394 (437)
T ss_pred             CCCCcce
Confidence            9999997

The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w

>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.75  E-value=3.1e-19  Score=191.88  Aligned_cols=281  Identities=23%  Similarity=0.296  Sum_probs=132.0

Q ss_pred             CcCCCCCCCccHHHHHHHHHHHHHHHHhcC-CCcCCCHHHHH----------------HccCC------------CCCCC
Q psy11694        309 SKVKEQGKCACCWAFSAVGVVEAMHAIQGN-SLTELSVQQLV----------------DCDMS------------NGGCN  359 (655)
Q Consensus       309 tpVkdQg~CGsCwAfa~~~~le~~~~i~~~-~~~~lS~q~l~----------------dC~~~------------~~gC~  359 (655)
                      .||.||..-|.||.||+...++..+..+.+ +...||+-+|.                ++...            ....+
T Consensus        56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~D  135 (438)
T PF03051_consen   56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSD  135 (438)
T ss_dssp             -S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S
T ss_pred             CCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCC
Confidence            499999999999999999999999988765 67899997765                33211            23478


Q ss_pred             CCcHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCCcc
Q psy11694        360 GGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLF  439 (655)
Q Consensus       360 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~~~  439 (655)
                      ||....+...|.++ |||+.+.||-+....+ +-....-  ...+++.+       ...|.+++.. |.-.-.+... ..
T Consensus       136 GGqw~~~~nli~KY-GvVPk~~mpet~~s~~-t~~~n~~--l~~~Lr~~-------a~~LR~~~~~-~~~~~~l~~~-k~  202 (438)
T PF03051_consen  136 GGQWDMVVNLIKKY-GVVPKSVMPETFSSSN-TSEMNEM--LNTKLREY-------ALELRKLVKA-GKSEEELRKL-KE  202 (438)
T ss_dssp             -B-HHHHHHHHHHH----BGGGSTTGCGCHB-HHHHHHH--HHHHHHHH-------HHHHHHHHHT-TTTCHHHHHH-HH
T ss_pred             CCchHHHHHHHHHc-CcCcHhhCCCCCCCCC-hHHHHHH--HHHHHHHH-------HHHHHHHHHc-CCCHHHHHHH-HH
Confidence            99999999999888 9999999996543220 0000000  00000000       0011111110 0000000000 00


Q ss_pred             cccccEEeCCceEEcCCccEEEEecCCCCccCCCceEEecccCCccccccccCCccccccccccccccCCCCCCCCCCCC
Q psy11694        440 YYSGGVIDLNQRLYGTSIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLPSKLSRLATEKLVDCDMSNGGCNGG  519 (655)
Q Consensus       440 ~Y~~Gi~~~~Havyg~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~~~gv~p~~~~~ls~q~l~~C~~~~~gC~GG  519 (655)
                      .....|                              .+|.        ..-.|..| +..++.   ..+   .+.-=.-+
T Consensus       203 ~~l~~i------------------------------y~il--------~~~lG~PP-~~F~~e---y~d---kd~~~~~~  237 (438)
T PF03051_consen  203 EMLAEI------------------------------YRIL--------AIYLGEPP-EKFTWE---YRD---KDKKYHRG  237 (438)
T ss_dssp             HHHHHH------------------------------HHHH--------HHHH---S-SSEEEE---EE----TTS-EEEE
T ss_pred             HHHHHH------------------------------HHHH--------HHHcCCCC-hheeEE---Eec---cccccccc
Confidence            000000                              0000        00122222 111111   000   00000001


Q ss_pred             CccchHHHHHHcCCCCCCC----------CcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHH-HHHHHHHhCCCEE
Q psy11694        520 RMDDALQYIIDNGGVVSDQ----------AYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEE-EMKKWVATRGPLS  588 (655)
Q Consensus       520 ~~~~a~~~~~~~~Gv~~e~----------~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~-~ik~~i~~~GPV~  588 (655)
                      -..++.+|+.+..|+..+.          ..||.....   -.. ..+....+...|.+++..... .+.+.|..+-||.
T Consensus       238 ~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~---ve~-~~Nv~~g~~~~ylNvpid~lk~~~i~~Lk~G~~Vw  313 (438)
T PF03051_consen  238 KNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYT---VEY-LGNVVGGRPVRYLNVPIDELKDAAIKSLKAGYPVW  313 (438)
T ss_dssp             EEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEE---ETT-TTSSTT-EEEEEEE--HHHHHHHHHHHHHTT--EE
T ss_pred             cccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEE---Ecc-CCCEECCcceeEeccCHHHHHHHHHHHHHcCCcEE
Confidence            2357899998877765543          223332211   001 112223344567888765433 3444555555999


Q ss_pred             EEEEccccccccCCeeecCCCC------------------CCCcccCeEEEEEEEecccCCCCCCC-CEEEEEcCCCCCc
Q psy11694        589 VGMNANGLFYYSGGVIDLNQRL------------------CNPKAQNHALIIVGYGEEEKKDGTSI-PYWIVKNSWGSDW  649 (655)
Q Consensus       589 ~~~~~~~~~~y~~Gi~~~~~~~------------------~~~~~~~HaV~iVGyg~~~~~~~~~~-~ywivrNSWG~~W  649 (655)
                      .+.+|..+++.+.||.+.....                  ...+..+|||+|||++.+.+    |. .+|+|+||||+..
T Consensus       314 fgcDV~k~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~~----g~p~~wkVeNSWG~~~  389 (438)
T PF03051_consen  314 FGCDVGKFFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDED----GKPVRWKVENSWGTDN  389 (438)
T ss_dssp             EEEETTTTEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-TT----SSEEEEEEE-SBTTTS
T ss_pred             EeccCCccccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEeccC----CCeeEEEEEcCCCCCC
Confidence            9999988888899998743211                  11256789999999998652    43 4899999999999


Q ss_pred             CCCCCC
Q psy11694        650 GEKVML  655 (655)
Q Consensus       650 Ge~Gy~  655 (655)
                      |.+|||
T Consensus       390 g~kGy~  395 (438)
T PF03051_consen  390 GDKGYF  395 (438)
T ss_dssp             TBTTEE
T ss_pred             CCCcEE
Confidence            999996

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....

>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=4.7e-18  Score=172.96  Aligned_cols=39  Identities=44%  Similarity=0.806  Sum_probs=37.2

Q ss_pred             CCCccccccccCccccccCCCcceeeecccchhhHHhhh
Q psy11694        147 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMH  185 (655)
Q Consensus       147 ~~P~~~DWr~~g~Vt~VkdQg~c~~~~a~~~~~~~e~~~  185 (655)
                      .+|.-||||+.|-||+|||||.||+||+|+++.++|+..
T Consensus        98 s~~~~fd~r~~g~vs~v~dQg~~Gscwaf~t~~sles~l  136 (372)
T COG4870          98 SLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYL  136 (372)
T ss_pred             cchhheeeeccCCcccccccCcccceEeeeehhhhhhee
Confidence            589999999999999999999999999999999998875

>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=99.72  E-value=1e-17  Score=130.42  Aligned_cols=58  Identities=26%  Similarity=0.442  Sum_probs=52.3

Q ss_pred             HHHHHHHcCcccCChHHHHHHHHHHHHHHHHHHHHhccCCCCeeeeccCCCCCCHHHH
Q psy11694         45 FLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSGTAVFEVNKFFDLSDSDL  102 (655)
Q Consensus        45 f~~~~~~~~k~Y~~~~e~~~r~~~f~~n~~~i~~~n~~~~~~~~~g~N~fsDlt~~E~  102 (655)
                      |++||++|+|+|.+.+|+++|+.||++|++.|++||+....+|++|||+|||||++||
T Consensus         1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf   58 (58)
T PF08246_consen    1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF   58 (58)
T ss_dssp             HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred             CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence            8999999999999999999999999999999999998788899999999999999998

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....

>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)

Probab=99.56  E-value=2.9e-15  Score=116.29  Aligned_cols=57  Identities=30%  Similarity=0.491  Sum_probs=54.3

Q ss_pred             HHHHHHHcCcccCChHHHHHHHHHHHHHHHHHHHHhccCCCCeeeeccCCCCCCHHH
Q psy11694         45 FLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSGTAVFEVNKFFDLSDSD  101 (655)
Q Consensus        45 f~~~~~~~~k~Y~~~~e~~~r~~~f~~n~~~i~~~n~~~~~~~~~g~N~fsDlt~~E  101 (655)
                      |..||++|+|.|.+.+|+.+|+.+|++|++.|..||+....+|++|||+|||||.+|
T Consensus         1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE   57 (57)
T smart00848        1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE   57 (57)
T ss_pred             ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence            689999999999999999999999999999999999877789999999999999886

This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s

>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]

Probab=99.41  E-value=1.1e-13  Score=138.28  Aligned_cols=90  Identities=22%  Similarity=0.398  Sum_probs=61.5

Q ss_pred             EeeeEEcCCCCHHHHHHHHHhCC-CEEEEEEccccccccCCeeecCCC------------------CCCCcccCeEEEEE
Q psy11694        563 VKEYSRIPYGEEEEMKKWVATRG-PLSVGMNANGLFYYSGGVIDLNQR------------------LCNPKAQNHALIIV  623 (655)
Q Consensus       563 ~~~~~~~~~~~~~~ik~~i~~~G-PV~~~~~~~~~~~y~~Gi~~~~~~------------------~~~~~~~~HaV~iV  623 (655)
                      ...|.+++......+...-++.| ||.+|.++..+...+.||.+..-.                  +.+.+...|||+|.
T Consensus       289 ~v~ylNv~me~lkkl~~~q~qagetVwFG~dvgq~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlT  368 (444)
T COG3579         289 AVKYLNVDMERLKKLAIKQMQAGETVWFGCDVGQLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLT  368 (444)
T ss_pred             eeEEecCcHHHHHHHHHHHHhcCCcEEeecCchhhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhh
Confidence            34455554433222222223444 999999998888888888763211                  12235568999999


Q ss_pred             EEecccCCCCCCCCEEEEEcCCCCCcCCCCCC
Q psy11694        624 GYGEEEKKDGTSIPYWIVKNSWGSDWGEKVML  655 (655)
Q Consensus       624 Gyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy~  655 (655)
                      |.+.+.  +|... -|.|+||||.+=|.+|||
T Consensus       369 Gvd~d~--~g~p~-rwkVENSWG~d~G~~Gyf  397 (444)
T COG3579         369 GVDLDE--TGNPL-RWKVENSWGKDVGKKGYF  397 (444)
T ss_pred             cccccc--CCCce-eeEeecccccccCCCceE
Confidence            999775  33333 499999999999999997

>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=99.40  E-value=5.9e-13  Score=103.57  Aligned_cols=58  Identities=26%  Similarity=0.402  Sum_probs=51.1

Q ss_pred             hhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeCcCCCCChHHH
Q psy11694        193 TELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDL  250 (655)
Q Consensus       193 ~~~~~q~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~~~~~g~N~FsDlt~eEf  250 (655)
                      |+.|+++|+|.|.+.+|+..|+.+|++|++.|.+||+.+..+|++|+|+|+|||.+||
T Consensus         1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf   58 (58)
T PF08246_consen    1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF   58 (58)
T ss_dssp             HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred             CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence            5789999999999999999999999999999999997777899999999999999997

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....

>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC)

Probab=99.33  E-value=2.3e-12  Score=139.06  Aligned_cols=75  Identities=20%  Similarity=0.374  Sum_probs=59.9

Q ss_pred             eeeceEEcCCCCHHHHH----HHHhhCCCeEEEEEcCCcccccccEEe----------------------------CCce
Q psy11694        404 KVKEYSRIPYGEEEEMK----KWVATRGPLSVGMNANGLFYYSGGVID----------------------------LNQR  451 (655)
Q Consensus       404 ~i~~~~~v~~~~~~~ik----~~l~~~gPV~v~i~~~~~~~Y~~Gi~~----------------------------~~Ha  451 (655)
                      +...|..++.   +.|+    ++|..++||.++.++..++.|++||+.                            .+||
T Consensus       285 ~~~~y~Nvp~---d~l~~~~~~~L~~g~pV~~g~Dv~~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHA  361 (437)
T cd00585         285 RPILYLNVPM---DVLKKAAIAQLKDGEPVWFGCDVGKFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHA  361 (437)
T ss_pred             ccceEEecCH---HHHHHHHHHHHhcCCCEEEEEEcChhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeE
Confidence            3344555543   4444    677889999999999888899999984                            4799


Q ss_pred             E----EcC---Cc-cEEEEecCCCCccCCCceEEeccc
Q psy11694        452 L----YGT---SI-PYWIVKNSWGSDWGEKVEDKVGSS  481 (655)
Q Consensus       452 v----yg~---g~-~yWivkNSWG~~WGe~Gy~~i~~~  481 (655)
                      |    ||.   |. .||+||||||++||++||++|++.
T Consensus       362 M~ivGv~~D~~g~p~yw~VkNSWG~~~G~~Gy~~ms~~  399 (437)
T cd00585         362 MVLTGVDLDEDGKPVKWKVENSWGEKVGKKGYFVMSDD  399 (437)
T ss_pred             EEEEEEEecCCCCcceEEEEcccCCCCCCCcceehhHH
Confidence            9    554   44 699999999999999999999864

The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w

>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)

Probab=99.15  E-value=4.7e-11  Score=92.55  Aligned_cols=57  Identities=32%  Similarity=0.433  Sum_probs=53.0

Q ss_pred             hhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeCcCCCCChHH
Q psy11694        193 TELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESD  249 (655)
Q Consensus       193 ~~~~~q~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~~~~~g~N~FsDlt~eE  249 (655)
                      |..|+++|+|.|.+.+|...|+.+|..|++.|..||..+..+|++|+|+|+|||++|
T Consensus         1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE   57 (57)
T smart00848        1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE   57 (57)
T ss_pred             ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence            457899999999999999999999999999999999877679999999999999986

This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s

>KOG4128|consensus

Probab=98.10  E-value=6.3e-07  Score=90.17  Aligned_cols=76  Identities=22%  Similarity=0.345  Sum_probs=57.2

Q ss_pred             CcCCCCCCCccHHHHHHHHHHHHHHHHhcC-CCcCCCHHHHHH--------------------ccCC----------CCC
Q psy11694        309 SKVKEQGKCACCWAFSAVGVVEAMHAIQGN-SLTELSVQQLVD--------------------CDMS----------NGG  357 (655)
Q Consensus       309 tpVkdQg~CGsCwAfa~~~~le~~~~i~~~-~~~~lS~q~l~d--------------------C~~~----------~~g  357 (655)
                      +||.||.+-|-||.|+.+..+.--+..+-+ .-..||..+|+-                    |...          +.-
T Consensus        63 ~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP~  142 (457)
T KOG4128|consen   63 QPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNPV  142 (457)
T ss_pred             cccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCCC
Confidence            699999999999999999888666555433 346788876652                    2211          233


Q ss_pred             CCCCcHHHHHHHHHHcCCCCCCCCCCCC
Q psy11694        358 CNGGRMDDALQYIIDNGGVVSDQAYPYK  385 (655)
Q Consensus       358 C~GG~~~~a~~~~~~~~Gi~~e~~yPY~  385 (655)
                      -+||.....+..++++ |+.+..|||-.
T Consensus       143 ~DGGqw~MfvNlVkKY-GviPKkcy~~s  169 (457)
T KOG4128|consen  143 PDGGQWQMFVNLVKKY-GVIPKKCYLHS  169 (457)
T ss_pred             CCCchHHHHHHHHHHh-CCCcHHhcccc
Confidence            5699888888888887 99999999855

>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.90  E-value=2.1e-05  Score=85.53  Aligned_cols=64  Identities=25%  Similarity=0.453  Sum_probs=49.4

Q ss_pred             HHHHHHHhhCCCeEEEEEcCCcccccccEEe----------------------------CCceE--EcC-----Cc-cEE
Q psy11694        417 EEMKKWVATRGPLSVGMNANGLFYYSGGVID----------------------------LNQRL--YGT-----SI-PYW  460 (655)
Q Consensus       417 ~~ik~~l~~~gPV~v~i~~~~~~~Y~~Gi~~----------------------------~~Hav--yg~-----g~-~yW  460 (655)
                      +.+..+|..+-||..+-++..+..-+.||.+                            .+|||  .|.     |. .+|
T Consensus       300 ~~~i~~Lk~G~~VwfgcDV~k~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~~g~p~~w  379 (438)
T PF03051_consen  300 DAAIKSLKAGYPVWFGCDVGKFFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDEDGKPVRW  379 (438)
T ss_dssp             HHHHHHHHTT--EEEEEETTTTEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-TTSSEEEE
T ss_pred             HHHHHHHHcCCcEEEeccCCccccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEeccCCCeeEE
Confidence            3455677778899999999887778889886                            58999  554     54 599


Q ss_pred             EEecCCCCccCCCceEEecc
Q psy11694        461 IVKNSWGSDWGEKVEDKVGS  480 (655)
Q Consensus       461 ivkNSWG~~WGe~Gy~~i~~  480 (655)
                      +|+||||++.|.+||+.|+.
T Consensus       380 kVeNSWG~~~g~kGy~~msd  399 (438)
T PF03051_consen  380 KVENSWGTDNGDKGYFYMSD  399 (438)
T ss_dssp             EEE-SBTTTSTBTTEEEEEH
T ss_pred             EEEcCCCCCCCCCcEEEECH
Confidence            99999999999999999974

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....

>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A

Probab=96.29  E-value=0.0037  Score=44.43  Aligned_cols=36  Identities=22%  Similarity=0.115  Sum_probs=24.4

Q ss_pred             HHHHHHhccCCCCeeeeccCCCCCCHHHHHHHhCCCCC
Q psy11694         74 EKAEDYQREDSGTAVFEVNKFFDLSDSDLQQLTGLNLD  111 (655)
Q Consensus        74 ~~i~~~n~~~~~~~~~g~N~fsDlt~~E~~~~~g~~~~  111 (655)
                      ++|+..|+. +.|++.|.| |.++|.+.+++++|..+.
T Consensus         4 e~I~~IN~~-~~tWkAG~N-F~~~~~~~ik~LlGv~~~   39 (41)
T PF08127_consen    4 EFIDYINSK-NTTWKAGRN-FENTSIEYIKRLLGVLPD   39 (41)
T ss_dssp             HHHHHHHHC-T-SEEE-----SSB-HHHHHHCS-B-TT
T ss_pred             HHHHHHHcC-CCcccCCCC-CCCCCHHHHHHHcCCCCC
Confidence            578888887 779999999 999999999999997654

Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.

>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A

Probab=95.02  E-value=0.023  Score=40.38  Aligned_cols=35  Identities=26%  Similarity=0.177  Sum_probs=23.3

Q ss_pred             HHHHHHhcCCCCceeeeeCcCCCCChHHHHhhcCCCC
Q psy11694        222 EKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLTGLNL  258 (655)
Q Consensus       222 ~~I~~~N~~~~~~~~~g~N~FsDlt~eEf~~~~~~~~  258 (655)
                      ++|+.+|+. +.+|++|.| |.+.|.+.++.++|...
T Consensus         4 e~I~~IN~~-~~tWkAG~N-F~~~~~~~ik~LlGv~~   38 (41)
T PF08127_consen    4 EFIDYINSK-NTTWKAGRN-FENTSIEYIKRLLGVLP   38 (41)
T ss_dssp             HHHHHHHHC-T-SEEE-----SSB-HHHHHHCS-B-T
T ss_pred             HHHHHHHcC-CCcccCCCC-CCCCCHHHHHHHcCCCC
Confidence            578888987 669999999 89999999999888643

Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.

>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A

Probab=91.97  E-value=0.58  Score=42.36  Aligned_cols=58  Identities=22%  Similarity=0.429  Sum_probs=34.8

Q ss_pred             CCHHHHHHHHHhCCCEEEEEEccccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCC
Q psy11694        572 GEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSW  645 (655)
Q Consensus       572 ~~~~~ik~~i~~~GPV~~~~~~~~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSW  645 (655)
                      .+.+.|++.|.++.||.+.+...-... .+..+       ....++|.|+|+||+++.        +++|..+|
T Consensus        87 ~~~~~i~~~i~~G~Pvi~~~~~~~~~~-~~~~~-------~~~~~~H~vvi~Gy~~~~--------~~~v~DP~  144 (144)
T PF13529_consen   87 ASFDDIKQEIDAGRPVIVSVNSGWRPP-NGDGY-------DGTYGGHYVVIIGYDEDG--------YVYVNDPW  144 (144)
T ss_dssp             S-HHHHHHHHHTT--EEEEEETTSS---TTEEE-------EE-TTEEEEEEEEE-SSE---------EEEE-TT
T ss_pred             CcHHHHHHHHHCCCcEEEEEEcccccC-CCCCc-------CCCcCCEEEEEEEEeCCC--------EEEEeCCC
Confidence            478999999998889999997421000 11112       123478999999999842        68888777

>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]

Probab=90.47  E-value=0.31  Score=50.30  Aligned_cols=57  Identities=25%  Similarity=0.404  Sum_probs=43.4

Q ss_pred             HhhCCCeEEEEEcCCcccccccEEe----------------------------CCceE--EcC-----C-ccEEEEecCC
Q psy11694        423 VATRGPLSVGMNANGLFYYSGGVID----------------------------LNQRL--YGT-----S-IPYWIVKNSW  466 (655)
Q Consensus       423 l~~~gPV~v~i~~~~~~~Y~~Gi~~----------------------------~~Hav--yg~-----g-~~yWivkNSW  466 (655)
                      +..+-||-.+-++..+..-+.||..                            ..|||  -|.     | .-=|.|.|||
T Consensus       308 ~qagetVwFG~dvgq~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~~g~p~rwkVENSW  387 (444)
T COG3579         308 MQAGETVWFGCDVGQLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDETGNPLRWKVENSW  387 (444)
T ss_pred             HhcCCcEEeecCchhhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhccccccCCCceeeEeeccc
Confidence            3446689888888878777888765                            35777  332     2 3369999999


Q ss_pred             CCccCCCceEEec
Q psy11694        467 GSDWGEKVEDKVG  479 (655)
Q Consensus       467 G~~WGe~Gy~~i~  479 (655)
                      |.+=|.+|||-++
T Consensus       388 G~d~G~~GyfvaS  400 (444)
T COG3579         388 GKDVGKKGYFVAS  400 (444)
T ss_pred             ccccCCCceEeeh
Confidence            9999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	655
2fye_A	217	Mutant Human Cathepsin S With Irreversible Inhibito		2e-35
2fye_A	217	Mutant Human Cathepsin S With Irreversible Inhibito		1e-24
2g6d_A	217	Human Cathepsin S Mutant With Vinyl Sulfone Inhibit		2e-35
2g6d_A	217	Human Cathepsin S Mutant With Vinyl Sulfone Inhibit		2e-24
1ms6_A	222	Dipeptide Nitrile Inhibitor Bound To Cathepsin S. L		3e-35
1ms6_A	222	Dipeptide Nitrile Inhibitor Bound To Cathepsin S. L		3e-24
2f1g_A	220	Cathepsin S In Complex With Non-Covalent 2-(Benzoxa		5e-35
2f1g_A	220	Cathepsin S In Complex With Non-Covalent 2-(Benzoxa		4e-24
3n3g_A	217	4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitri		5e-35
3n3g_A	217	4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitri		4e-24
1npz_A	217	Crystal Structures Of Cathepsin S Inhibitor Complex		6e-35
1npz_A	217	Crystal Structures Of Cathepsin S Inhibitor Complex		4e-24
3ovx_A	218	Cathepsin S In Complex With A Covalent Inhibitor Wi		6e-35
3ovx_A	218	Cathepsin S In Complex With A Covalent Inhibitor Wi		5e-24
2fq9_A	225	Cathepsin S With Nitrile Inhibitor Length = 225		6e-35
2fq9_A	225	Cathepsin S With Nitrile Inhibitor Length = 225		5e-24
2c0y_A	315	The Crystal Structure Of A Cys25ala Mutant Of Human		3e-34
2c0y_A	315	The Crystal Structure Of A Cys25ala Mutant Of Human		4e-24
2fo5_A	262	Crystal Structure Of Recombinant Barley Cysteine En		5e-34
2fo5_A	262	Crystal Structure Of Recombinant Barley Cysteine En		2e-19
3mpe_A	220	Crystal Structure Of Human Cathepsin-S C25s Mutant		7e-34
3mpe_A	220	Crystal Structure Of Human Cathepsin-S C25s Mutant		3e-24
3kwn_A	219	Cathepsin S In Complex With Thioether Acetamide P3		8e-34
3kwn_A	219	Cathepsin S In Complex With Thioether Acetamide P3		4e-24
1ewp_A	215	Cruzain Bound To Mor-Leu-Hpq Length = 215		8e-34
1ewp_A	215	Cruzain Bound To Mor-Leu-Hpq Length = 215		4e-21
3iej_A	222	Pyrazole-Based Cathepsin S Inhibitors With Arylalky		9e-34
3iej_A	222	Pyrazole-Based Cathepsin S Inhibitors With Arylalky		4e-24
1aim_A	215	Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluor		9e-34
1aim_A	215	Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluor		9e-22
1glo_A	217	Crystal Structure Of Cys25ser Mutant Of Human Cathe		1e-33
1glo_A	217	Crystal Structure Of Cys25ser Mutant Of Human Cathe		7e-24
3iut_A	221	The Crystal Structure Of Cruzain In Complex With A		2e-33
3iut_A	221	The Crystal Structure Of Cruzain In Complex With A		4e-22
3hd3_A	215	High Resolution Crystal Structure Of Cruzain Bound		2e-33
3hd3_A	215	High Resolution Crystal Structure Of Cruzain Bound		4e-22
1cqd_A	221	The 2.1 Angstrom Structure Of A Cysteine Protease W		3e-33
1cqd_A	221	The 2.1 Angstrom Structure Of A Cysteine Protease W		2e-23
2pns_A	208	1.9 Angstrom Resolution Crystal Structure Of A Plan		6e-32
2pns_A	208	1.9 Angstrom Resolution Crystal Structure Of A Plan		1e-17
1o0e_A	208	1.9 Angstrom Crystal Structure Of A Plant Cysteine		1e-31
1o0e_A	208	1.9 Angstrom Crystal Structure Of A Plant Cysteine		5e-17
1s4v_A	229	The 2.0 A Crystal Structure Of The Kdel-Tailed Cyst		4e-31
1s4v_A	229	The 2.0 A Crystal Structure Of The Kdel-Tailed Cyst		4e-18
3bcn_A	209	Crystal Structure Of A Papain-Like Cysteine Proteas		9e-31
3bcn_A	209	Crystal Structure Of A Papain-Like Cysteine Proteas		1e-17
7pck_A	314	Crystal Structure Of Wild Type Human Procathepsin K		9e-31
7pck_A	314	Crystal Structure Of Wild Type Human Procathepsin K		4e-21
3qt4_A	329	Structure Of Digestive Procathepsin L 3 Of Tenebrio		1e-30
3qt4_A	329	Structure Of Digestive Procathepsin L 3 Of Tenebrio		3e-21
3p5w_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		2e-30
3p5w_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		2e-19
1aec_A	218	Crystal Structure Of Actinidin-E-64 Complex+ Length		5e-30
1aec_A	218	Crystal Structure Of Actinidin-E-64 Complex+ Length		1e-19
1iwd_A	215	Proposed Amino Acid Sequence And The 1.63 Angstrom		2e-29
1iwd_A	215	Proposed Amino Acid Sequence And The 1.63 Angstrom		3e-21
2p7u_A	215	The Crystal Structure Of Rhodesain, The Major Cyste		3e-29
2p7u_A	215	The Crystal Structure Of Rhodesain, The Major Cyste		1e-17
3p5u_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		4e-29
3p5u_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		2e-19
3hwn_A	258	Cathepsin L With Az13010160 Length = 258		1e-28
3hwn_A	258	Cathepsin L With Az13010160 Length = 258		2e-20
1snk_A	214	Cathepsin K Complexed With Carbamate Derivatized No		1e-28
1snk_A	214	Cathepsin K Complexed With Carbamate Derivatized No		6e-21
1u9v_A	217	Crystal Structure Of The Cysteine Protease Human Ca		1e-28
1u9v_A	217	Crystal Structure Of The Cysteine Protease Human Ca		6e-21
1mem_A	215	Crystal Structure Of Cathepsin K Complexed With A P		1e-28
1mem_A	215	Crystal Structure Of Cathepsin K Complexed With A P		6e-21
3h7d_A	215	The Crystal Structure Of The Cathepsin K Variant M5		2e-28
3h7d_A	215	The Crystal Structure Of The Cathepsin K Variant M5		4e-21
3of8_A	221	Structural Basis For Reversible And Irreversible In		4e-28
3of8_A	221	Structural Basis For Reversible And Irreversible In		3e-20
2f7d_A	215	A Mutant Rabbit Cathepsin K With A Nitrile Inhibito		5e-28
2f7d_A	215	A Mutant Rabbit Cathepsin K With A Nitrile Inhibito		8e-20
3hha_A	220	Crystal Structure Of Cathepsin L In Complex With Az		6e-28
3hha_A	220	Crystal Structure Of Cathepsin L In Complex With Az		3e-20
3h89_A	220	A Combined Crystallographic And Molecular Dynamics		6e-28
3h89_A	220	A Combined Crystallographic And Molecular Dynamics		4e-20
3f75_A	224	Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In		6e-28
3f75_A	224	Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In		3e-18
3qj3_A	331	Structure Of Digestive Procathepsin L2 Proteinase F		9e-28
3qj3_A	331	Structure Of Digestive Procathepsin L2 Proteinase F		9e-20
1cjl_A	312	Crystal Structure Of A Cysteine Protease Proform Le		1e-27
1cjl_A	312	Crystal Structure Of A Cysteine Protease Proform Le		2e-21
3ovz_A	213	Cathepsin K In Complex With A Covalent Inhibitor Wi		1e-27
3ovz_A	213	Cathepsin K In Complex With A Covalent Inhibitor Wi		5e-21
1cs8_A	316	Crystal Structure Of Procathepsin L Length = 316		1e-27
1cs8_A	316	Crystal Structure Of Procathepsin L Length = 316		1e-20
1fh0_A	221	Crystal Structure Of Human Cathepsin V Complexed Wi		1e-27
1fh0_A	221	Crystal Structure Of Human Cathepsin V Complexed Wi		6e-20
1yal_A	218	Carica Papaya Chymopapain At 1.7 Angstroms Resoluti		3e-27
1yal_A	218	Carica Papaya Chymopapain At 1.7 Angstroms Resoluti		4e-16
2nqd_B	221	Crystal Structure Of Cysteine Protease Inhibitor, C		5e-27
2nqd_B	221	Crystal Structure Of Cysteine Protease Inhibitor, C		3e-20
3iv2_A	220	Crystal Structure Of Mature Apo-Cathepsin L C25a Mu		6e-27
3iv2_A	220	Crystal Structure Of Mature Apo-Cathepsin L C25a Mu		3e-20
1vsn_A	215	Crystal Structure Of A Potent Small Molecule Inhibi		6e-27
1vsn_A	215	Crystal Structure Of A Potent Small Molecule Inhibi		7e-20
1pci_A	322	Procaricain Length = 322		7e-27
1pci_A	322	Procaricain Length = 322		7e-07
3bc3_A	220	Exploring Inhibitor Binding At The S Subsites Of Ca		9e-27
3bc3_A	220	Exploring Inhibitor Binding At The S Subsites Of Ca		3e-20
3kse_A	220	Unreduced Cathepsin L In Complex With Stefin A Leng		9e-27
3kse_A	220	Unreduced Cathepsin L In Complex With Stefin A Leng		4e-20
2act_A	220	Crystallographic Refinement Of The Structure Of Act		2e-26
2act_A	220	Crystallographic Refinement Of The Structure Of Act		2e-17
2vhs_A	217	Cathsilicatein, A Chimera Length = 217		2e-26
2vhs_A	217	Cathsilicatein, A Chimera Length = 217		2e-18
2bdz_A	214	Mexicain From Jacaratia Mexicana Length = 214		2e-26
2bdz_A	214	Mexicain From Jacaratia Mexicana Length = 214		3e-14
3h6s_A	221	Strucure Of Clitocypin - Cathepsin V Complex Length		3e-26
3h6s_A	221	Strucure Of Clitocypin - Cathepsin V Complex Length		6e-20
2b1m_A	246	Crystal Structure Of A Papain-Fold Protein Without		2e-25
2b1m_A	246	Crystal Structure Of A Papain-Fold Protein Without		3e-14
3tnx_A	363	Structure Of The Precursor Of A Thermostable Varian		5e-25
3tnx_A	363	Structure Of The Precursor Of A Thermostable Varian		6e-07
3bpm_A	243	Crystal Structure Of Falcipain-3 With Its Inhibitor		1e-24
3bpm_A	243	Crystal Structure Of Falcipain-3 With Its Inhibitor		8e-16
1yvb_A	241	The Plasmodium Falciparum Cysteine Protease Falcipa		3e-24
1yvb_A	241	The Plasmodium Falciparum Cysteine Protease Falcipa		2e-15
1icf_A	175	Crystal Structure Of Mhc Class Ii Associated P41 Ii		4e-24
1icf_A	175	Crystal Structure Of Mhc Class Ii Associated P41 Ii		2e-14
2o6x_A	310	Crystal Structure Of Procathepsin L1 From Fasciola		5e-24
2o6x_A	310	Crystal Structure Of Procathepsin L1 From Fasciola		2e-16
3u8e_A	222	Crystal Structure Of Cysteine Protease From Bulbs O		8e-24
3u8e_A	222	Crystal Structure Of Cysteine Protease From Bulbs O		2e-14
1meg_A	216	Crystal Structure Of A Caricain D158e Mutant In Com		1e-23
1meg_A	216	Crystal Structure Of A Caricain D158e Mutant In Com		3e-08
1ppo_A	216	Determination Of The Structure Of Papaya Protease O		2e-23
1ppo_A	216	Determination Of The Structure Of Papaya Protease O		4e-08
3pnr_A	240	Structure Of Pbicp-C In Complex With Falcipain-2 Le		4e-23
3pnr_A	240	Structure Of Pbicp-C In Complex With Falcipain-2 Le		2e-15
1mhw_A	175	Design Of Non-covalent Inhibitors Of Human Cathepsi		6e-23
1mhw_A	175	Design Of Non-covalent Inhibitors Of Human Cathepsi		2e-14
1m6d_A	214	Crystal Structure Of Human Cathepsin F Length = 214		1e-22
1m6d_A	214	Crystal Structure Of Human Cathepsin F Length = 214		2e-17
8pch_A	220	Crystal Structure Of Porcine Cathepsin H Determined		1e-22
8pch_A	220	Crystal Structure Of Porcine Cathepsin H Determined		9e-18
1gec_E	216	Glycyl Endopeptidase-complex With Benzyloxycarbonyl		1e-22
1gec_E	216	Glycyl Endopeptidase-complex With Benzyloxycarbonyl		1e-06
1khp_A	212	Monoclinic Form Of Papain/zlfg-dam Covalent Complex		4e-21
1khp_A	212	Monoclinic Form Of Papain/zlfg-dam Covalent Complex		2e-07
1pip_A	212	Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Al		2e-20
1pip_A	212	Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Al		2e-07
1ppp_A	212	Crystal Structure Of Papain-E64-C Complex. Binding		3e-20
1ppp_A	212	Crystal Structure Of Papain-E64-C Complex. Binding		3e-07
3ioq_A	213	Crystal Structure Of The Carica Candamarcensis Cyst		5e-20
3ioq_A	213	Crystal Structure Of The Carica Candamarcensis Cyst		1e-09
2cio_A	212	The High Resolution X-Ray Structure Of Papain Compl		2e-19
2cio_A	212	The High Resolution X-Ray Structure Of Papain Compl		1e-07
1stf_E	212	The Refined 2.4 Angstroms X-Ray Crystal Structure O		3e-19
1stf_E	212	The Refined 2.4 Angstroms X-Ray Crystal Structure O		3e-07
3ima_A	212	Complex Strcuture Of Tarocystatin And Papain Length		7e-19
3ima_A	212	Complex Strcuture Of Tarocystatin And Papain Length		2e-06
1jqp_A	438	Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric		1e-14
1jqp_A	438	Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric		5e-11
3d6s_A	223	Crystal Structure Of Mite Allergen Der F 1 Length =		5e-14
3d6s_A	223	Crystal Structure Of Mite Allergen Der F 1 Length =		1e-07
3pdf_A	441	Discovery Of Novel Cyanamide-Based Inhibitors Of Ca		5e-13
3pdf_A	441	Discovery Of Novel Cyanamide-Based Inhibitors Of Ca		1e-08
1xkg_A	312	Crystal Structure Of The Major House Dust Mite Alle		9e-12
1xkg_A	312	Crystal Structure Of The Major House Dust Mite Alle		1e-06
3rvw_A	222	Crystal Structure Of Der P 1 Complexed With Fab 4c1		2e-11
3rvw_A	222	Crystal Structure Of Der P 1 Complexed With Fab 4c1		5e-06
2as8_A	222	Crystal Structure Of Mature And Fully Active Der P		6e-11
2as8_A	222	Crystal Structure Of Mature And Fully Active Der P		3e-06
3f5v_A	222	C2 Crystal Form Of Mite Allergen Der P 1 Length = 2		1e-09
3f5v_A	222	C2 Crystal Form Of Mite Allergen Der P 1 Length = 2		3e-06
3qsd_A	254	Structure Of Cathepsin B1 From Schistosoma Mansoni		1e-09
3qsd_A	254	Structure Of Cathepsin B1 From Schistosoma Mansoni		2e-04
4hwy_A	340	Trypanosoma Brucei Procathepsin B Solved From 40 Fs		4e-08
4hwy_A	340	Trypanosoma Brucei Procathepsin B Solved From 40 Fs		6e-05
3mor_A	317	Crystal Structure Of Cathepsin B From Trypanosoma B		4e-08
3mor_A	317	Crystal Structure Of Cathepsin B From Trypanosoma B		8e-05
3hhi_A	325	Crystal Structure Of Cathepsin B From T. Brucei In		5e-08
3hhi_A	325	Crystal Structure Of Cathepsin B From T. Brucei In		8e-05
1pbh_A	317	Crystal Structure Of Human Recombinant Procathepsin		1e-07
1k3b_B	164	Crystal Structure Of Human Dipeptidyl Peptidase I (		2e-07
3ai8_B	256	Cathepsin B In Complex With The Nitroxoline Length		2e-07
3k9m_A	254	Cathepsin B In Complex With Stefin A Length = 254		2e-07
1gmy_A	261	Cathepsin B Complexed With Dipeptidyl Nitrile Inhib		3e-07
1deu_A	277	Crystal Structure Of Human Procathepsin X: A Cystei		7e-07
1deu_A	277	Crystal Structure Of Human Procathepsin X: A Cystei		4e-06
1cpj_A	260	Crystal Structures Of Recombinant Rat Cathepsin B A		1e-06
1cte_A	254	Crystal Structures Of Recombinant Rat Cathepsin B A		2e-06
1ef7_A	242	Crystal Structure Of Human Cathepsin X Length = 242		3e-06
3cbj_A	266	Chagasin-cathepsin B Complex Length = 266		5e-06
3ch2_X	265	Crystal Structure Analysis Of Sera5e From Plasmodiu		6e-06
1mir_A	322	Rat Procathepsin B Length = 322		1e-05
1k3b_C	69	Crystal Structure Of Human Dipeptidyl Peptidase I (		2e-05
2wbf_X	265	Crystal Structure Analysis Of Sera5e From Plasmodiu		2e-05

>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra- 14013 Length = 217

Iteration: 1
 Score =  147 bits (371), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/196 (42%), Positives = 111/196 (56%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS- 354
           LP++ DWR +G +++VK QG C  CWAFSAVG +EA   ++   L  LS Q LVDC    
Sbjct: 1   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 355 --NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
             N GCNGG M  A QYIIDN G+ SD +YPYKA + +                 Y+ +P
Sbjct: 61  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSAYRAATCRKYTELP 117
Query: 413 YGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVI-------DLNQRL----YG--TSI 457
           YG E+ +K+ VA +GP+SVG++A     F Y  GV        ++N  +    YG     
Sbjct: 118 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 177
Query: 458 PYWIVKNSWGSDWGEK 473
            YW+VKNSWG ++GEK
Sbjct: 178 EYWLVKNSWGHNFGEK 193

>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra- 14013 Length = 217

Iteration: 1
 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 90/161 (55%), Gaps = 16/161 (9%)
Query: 497 KLSRLATEKLVDCDMS---NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLX 553
           KL  L+ + LVDC      N GCNGG M  A QYIIDN G+ SD +YPYKA + +     
Sbjct: 44  KLVSLSAQNLVDCSTKKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQ 100
Query: 554 XXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLC 611
                       Y+ +PYG E+ +K+ VA +GP+SVG++A     F Y  GV    +  C
Sbjct: 101 YDSAYRAATCRKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSC 158
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
                NH +++VGYG+   K+     YW+VKNSWG ++GEK
Sbjct: 159 TQNV-NHGVLVVGYGDLNGKE-----YWLVKNSWGHNFGEK 193

>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra- 14009 Length = 217

Iteration: 1
 Score =  147 bits (371), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/196 (42%), Positives = 111/196 (56%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-- 353
           LP++ DWR +G +++VK QG C  CWAFSAVG +EA   ++   L  LS Q LVDC    
Sbjct: 1   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 354 -SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
             N GCNGG M  A QYIIDN G+ SD +YPYKA + +                 Y+ +P
Sbjct: 61  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCRKYTELP 117
Query: 413 YGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVI-------DLNQRL----YG--TSI 457
           YG E+ +K+ VA +GP+SVG++A     F Y  GV        ++N  +    YG     
Sbjct: 118 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 177
Query: 458 PYWIVKNSWGSDWGEK 473
            YW+VKNSWG ++GEK
Sbjct: 178 EYWLVKNSWGHNFGEK 193

>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra- 14009 Length = 217

Iteration: 1
 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 90/161 (55%), Gaps = 16/161 (9%)
Query: 497 KLSRLATEKLVDCDM---SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLX 553
           KL  L+ + LVDC      N GCNGG M  A QYIIDN G+ SD +YPYKA + +     
Sbjct: 44  KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQ 100
Query: 554 XXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLC 611
                       Y+ +PYG E+ +K+ VA +GP+SVG++A     F Y  GV    +  C
Sbjct: 101 YDSKYRAATCRKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSC 158
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
                NH +++VGYG+   K+     YW+VKNSWG ++GEK
Sbjct: 159 TQNV-NHGVLVVGYGDLNGKE-----YWLVKNSWGHNFGEK 193

>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S. Length = 222

Iteration: 1
 Score =  146 bits (369), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 82/196 (41%), Positives = 111/196 (56%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-- 353
           LP++ DWR +G +++VK QG C  CWAFSAVG +EA   ++   L  LS Q LVDC    
Sbjct: 1   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 354 -SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
             N GCNGG M  A QYIIDN G+ SD +YPYKA + +                 Y+ +P
Sbjct: 61  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELP 117
Query: 413 YGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVI-------DLNQRL----YG--TSI 457
           YG E+ +K+ VA +GP+SVG++A     F Y  GV        ++N  +    YG     
Sbjct: 118 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 177
Query: 458 PYWIVKNSWGSDWGEK 473
            YW+VKNSWG ++GE+
Sbjct: 178 EYWLVKNSWGHNFGEE 193

>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S. Length = 222

Iteration: 1
 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 90/161 (55%), Gaps = 16/161 (9%)
Query: 497 KLSRLATEKLVDCDM---SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLX 553
           KL  L+ + LVDC      N GCNGG M  A QYIIDN G+ SD +YPYKA + +     
Sbjct: 44  KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQ 100
Query: 554 XXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLC 611
                       Y+ +PYG E+ +K+ VA +GP+SVG++A     F Y  GV    +  C
Sbjct: 101 YDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSC 158
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
                NH +++VGYG+   K+     YW+VKNSWG ++GE+
Sbjct: 159 TQNV-NHGVLVVGYGDLNGKE-----YWLVKNSWGHNFGEE 193

>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent 2-(Benzoxazol-2-Ylamino)- Acetamide Length = 220

Iteration: 1
 Score =  145 bits (367), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 82/196 (41%), Positives = 111/196 (56%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-- 353
           LP++ DWR +G +++VK QG C  CWAFSAVG +EA   ++   L  LS Q LVDC    
Sbjct: 4   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 63
Query: 354 -SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
             N GCNGG M  A QYIIDN G+ SD +YPYKA + +                 Y+ +P
Sbjct: 64  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELP 120
Query: 413 YGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVI-------DLNQRL----YG--TSI 457
           YG E+ +K+ VA +GP+SVG++A     F Y  GV        ++N  +    YG     
Sbjct: 121 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 180
Query: 458 PYWIVKNSWGSDWGEK 473
            YW+VKNSWG ++GE+
Sbjct: 181 EYWLVKNSWGHNFGEE 196

>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent 2-(Benzoxazol-2-Ylamino)- Acetamide Length = 220

Iteration: 1
 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 90/161 (55%), Gaps = 16/161 (9%)
Query: 497 KLSRLATEKLVDCDM---SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLX 553
           KL  L+ + LVDC      N GCNGG M  A QYIIDN G+ SD +YPYKA + +     
Sbjct: 47  KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQ 103
Query: 554 XXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLC 611
                       Y+ +PYG E+ +K+ VA +GP+SVG++A     F Y  GV    +  C
Sbjct: 104 YDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSC 161
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
                NH +++VGYG+   K+     YW+VKNSWG ++GE+
Sbjct: 162 TQNV-NHGVLVVGYGDLNGKE-----YWLVKNSWGHNFGEE 196

>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As Cathepsin S Inhibitors: N3, Not N1 Is Critically Important Length = 217

Iteration: 1
 Score =  145 bits (367), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 82/196 (41%), Positives = 111/196 (56%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-- 353
           LP++ DWR +G +++VK QG C  CWAFSAVG +EA   ++   L  LS Q LVDC    
Sbjct: 1   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 354 -SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
             N GCNGG M  A QYIIDN G+ SD +YPYKA + +                 Y+ +P
Sbjct: 61  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELP 117
Query: 413 YGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVI-------DLNQRL----YG--TSI 457
           YG E+ +K+ VA +GP+SVG++A     F Y  GV        ++N  +    YG     
Sbjct: 118 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 177
Query: 458 PYWIVKNSWGSDWGEK 473
            YW+VKNSWG ++GE+
Sbjct: 178 EYWLVKNSWGHNFGEE 193

>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As Cathepsin S Inhibitors: N3, Not N1 Is Critically Important Length = 217

Iteration: 1
 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 90/161 (55%), Gaps = 16/161 (9%)
Query: 497 KLSRLATEKLVDCDM---SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLX 553
           KL  L+ + LVDC      N GCNGG M  A QYIIDN G+ SD +YPYKA + +     
Sbjct: 44  KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQ 100
Query: 554 XXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLC 611
                       Y+ +PYG E+ +K+ VA +GP+SVG++A     F Y  GV    +  C
Sbjct: 101 YDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSC 158
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
                NH +++VGYG+   K+     YW+VKNSWG ++GE+
Sbjct: 159 TQNV-NHGVLVVGYGDLNGKE-----YWLVKNSWGHNFGEE 193

>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes Length = 217

Iteration: 1
 Score =  145 bits (367), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 82/196 (41%), Positives = 111/196 (56%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-- 353
           LP++ DWR +G +++VK QG C  CWAFSAVG +EA   ++   L  LS Q LVDC    
Sbjct: 1   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 354 -SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
             N GCNGG M  A QYIIDN G+ SD +YPYKA + +                 Y+ +P
Sbjct: 61  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELP 117
Query: 413 YGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVI-------DLNQRL----YG--TSI 457
           YG E+ +K+ VA +GP+SVG++A     F Y  GV        ++N  +    YG     
Sbjct: 118 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 177
Query: 458 PYWIVKNSWGSDWGEK 473
            YW+VKNSWG ++GE+
Sbjct: 178 EYWLVKNSWGHNFGEE 193

>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes Length = 217

Iteration: 1
 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 90/161 (55%), Gaps = 16/161 (9%)
Query: 497 KLSRLATEKLVDCDM---SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLX 553
           KL  L+ + LVDC      N GCNGG M  A QYIIDN G+ SD +YPYKA + +     
Sbjct: 44  KLVTLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQ 100
Query: 554 XXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLC 611
                       Y+ +PYG E+ +K+ VA +GP+SVG++A     F Y  GV    +  C
Sbjct: 101 YDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSC 158
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
                NH +++VGYG+   K+     YW+VKNSWG ++GE+
Sbjct: 159 TQNV-NHGVLVVGYGDLNGKE-----YWLVKNSWGHNFGEE 193

>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An Aldehyde Warhead Length = 218

Iteration: 1
 Score =  145 bits (366), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 82/196 (41%), Positives = 111/196 (56%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-- 353
           LP++ DWR +G +++VK QG C  CWAFSAVG +EA   ++   L  LS Q LVDC    
Sbjct: 2   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 354 -SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
             N GCNGG M  A QYIIDN G+ SD +YPYKA + +                 Y+ +P
Sbjct: 62  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELP 118
Query: 413 YGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVI-------DLNQRL----YG--TSI 457
           YG E+ +K+ VA +GP+SVG++A     F Y  GV        ++N  +    YG     
Sbjct: 119 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 178
Query: 458 PYWIVKNSWGSDWGEK 473
            YW+VKNSWG ++GE+
Sbjct: 179 EYWLVKNSWGHNFGEE 194

>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An Aldehyde Warhead Length = 218

Iteration: 1
 Score =  109 bits (273), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 90/161 (55%), Gaps = 16/161 (9%)
Query: 497 KLSRLATEKLVDCDM---SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLX 553
           KL  L+ + LVDC      N GCNGG M  A QYIIDN G+ SD +YPYKA + +     
Sbjct: 45  KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQ 101
Query: 554 XXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLC 611
                       Y+ +PYG E+ +K+ VA +GP+SVG++A     F Y  GV    +  C
Sbjct: 102 YDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSC 159
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
                NH +++VGYG+   K+     YW+VKNSWG ++GE+
Sbjct: 160 TQNV-NHGVLVVGYGDLNGKE-----YWLVKNSWGHNFGEE 194

>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor Length = 225

Iteration: 1
 Score =  145 bits (366), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 80/196 (40%), Positives = 112/196 (57%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-- 353
           LP++ DWR +G +++VK QG C  CWAFSAVG +EA   ++   L  LS Q LVDC    
Sbjct: 2   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 354 -SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
             N GCNGG M  A QYIIDN G+ SD +YPYKA + +                 Y+ +P
Sbjct: 62  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELP 118
Query: 413 YGEEEEMKKWVATRGPLSVGMNA---------NGLFYYSGGVIDLNQRL----YG--TSI 457
           YG E+ +K+ VA +GP+SVG++A         +G++Y      ++N  +    YG     
Sbjct: 119 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 178
Query: 458 PYWIVKNSWGSDWGEK 473
            YW+VKNSWG ++GE+
Sbjct: 179 EYWLVKNSWGHNFGEE 194

>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor Length = 225

Iteration: 1
 Score =  109 bits (272), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 90/161 (55%), Gaps = 16/161 (9%)
Query: 497 KLSRLATEKLVDCDM---SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLX 553
           KL  L+ + LVDC      N GCNGG M  A QYIIDN G+ SD +YPYKA + +     
Sbjct: 45  KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQ 101
Query: 554 XXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLC 611
                       Y+ +PYG E+ +K+ VA +GP+SVG++A     F Y  GV    +  C
Sbjct: 102 YDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSC 159
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
                NH +++VGYG+   K+     YW+VKNSWG ++GE+
Sbjct: 160 TQNV-NHGVLVVGYGDLNGKE-----YWLVKNSWGHNFGEE 194

>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human Procathepsin S Length = 315

Iteration: 1
 Score =  143 bits (360), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/196 (41%), Positives = 110/196 (56%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-- 353
           LP++ DWR +G +++VK QG C   WAFSAVG +EA   ++   L  LS Q LVDC    
Sbjct: 99  LPDSVDWREKGCVTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 158
Query: 354 -SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
             N GCNGG M  A QYIIDN G+ SD +YPYKA + +                 Y+ +P
Sbjct: 159 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELP 215
Query: 413 YGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVI-------DLNQRL----YG--TSI 457
           YG E+ +K+ VA +GP+SVG++A     F Y  GV        ++N  +    YG     
Sbjct: 216 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 275
Query: 458 PYWIVKNSWGSDWGEK 473
            YW+VKNSWG ++GE+
Sbjct: 276 EYWLVKNSWGHNFGEE 291

>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human Procathepsin S Length = 315

Iteration: 1
 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 90/161 (55%), Gaps = 16/161 (9%)
Query: 497 KLSRLATEKLVDCDMS---NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLX 553
           KL  L+ + LVDC      N GCNGG M  A QYIIDN G+ SD +YPYKA + +     
Sbjct: 142 KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQ 198
Query: 554 XXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLC 611
                       Y+ +PYG E+ +K+ VA +GP+SVG++A     F Y  GV    +  C
Sbjct: 199 YDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSC 256
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
                NH +++VGYG+   K+     YW+VKNSWG ++GE+
Sbjct: 257 TQNV-NHGVLVVGYGDLNGKE-----YWLVKNSWGHNFGEE 291

>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine Endoprotease B Isoform 2 (Ep-B2) In Complex With Leupeptin Length = 262

Iteration: 1
 Score =  142 bits (358), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 84/212 (39%), Positives = 119/212 (56%), Gaps = 28/212 (13%)
Query: 295 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS 354
           DLP + DWR +G ++ VK+QGKC  CWAFS V  VE ++AI+  SL  LS Q+L+DCD +
Sbjct: 3   DLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTA 62
Query: 355 -NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXX----YS 409
            N GC GG MD+A +YI +NGG++++ AYPY+A+   RG                   + 
Sbjct: 63  DNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAA---RGTCNVARAAQNSPVVVHIDGHQ 119
Query: 410 RIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGV--------IDLNQRLYGTSI-- 457
            +P   EE++ + VA + P+SV + A+G    +YS GV        +D    + G  +  
Sbjct: 120 DVPANSEEDLARAVANQ-PVSVAVEASGKAFMFYSEGVFTGECGTELDHGVAVVGYGVAE 178
Query: 458 ---PYWIVKNSWGSDWGE----KVEDKVGSSG 482
               YW VKNSWG  WGE    +VE   G+SG
Sbjct: 179 DGKAYWTVKNSWGPSWGEQGYIRVEKDSGASG 210

>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine Endoprotease B Isoform 2 (Ep-B2) In Complex With Leupeptin Length = 262

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 92/170 (54%), Gaps = 19/170 (11%)
Query: 490 LTGVLPSKLSRLATEKLVDCDMS-NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESE 548
           +  +    L  L+ ++L+DCD + N GC GG MD+A +YI +NGG++++ AYPY+A+   
Sbjct: 40  INAIRTGSLVSLSEQELIDCDTADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAA--- 96
Query: 549 RGCLXXXXXXXXXXXXX----YSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGG 602
           RG                   +  +P   EE++ + VA + P+SV + A+G    +YS G
Sbjct: 97  RGTCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVANQ-PVSVAVEASGKAFMFYSEG 155
Query: 603 VIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           V       C  +  +H + +VGYG  E  DG +  YW VKNSWG  WGE+
Sbjct: 156 VFTGE---CGTE-LDHGVAVVGYGVAE--DGKA--YWTVKNSWGPSWGEQ 197

>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With Bound Drug Length = 220

Iteration: 1
 Score =  142 bits (357), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 81/196 (41%), Positives = 110/196 (56%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-- 353
           LP++ DWR +G +++VK QG C   WAFSAVG +EA   ++   L  LS Q LVDC    
Sbjct: 2   LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 354 -SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
             N GCNGG M  A QYIIDN G+ SD +YPYKA + +                 Y+ +P
Sbjct: 62  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELP 118
Query: 413 YGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVI-------DLNQRL----YG--TSI 457
           YG E+ +K+ VA +GP+SVG++A     F Y  GV        ++N  +    YG     
Sbjct: 119 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 178
Query: 458 PYWIVKNSWGSDWGEK 473
            YW+VKNSWG ++GE+
Sbjct: 179 EYWLVKNSWGHNFGEE 194

>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With Bound Drug Length = 220

Iteration: 1
 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 101/199 (50%), Gaps = 26/199 (13%)
Query: 469 DWGEK---VEDKVGSSGNRTRDLELTGVLPS-------KLSRLATEKLVDCDM---SNGG 515
           DW EK    E K   S   +      G L +       KL  L+ + LVDC      N G
Sbjct: 7   DWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKG 66
Query: 516 CNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEE 575
           CNGG M  A QYIIDN G+ SD +YPYKA + +                 Y+ +PYG E+
Sbjct: 67  CNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELPYGRED 123
Query: 576 EMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDG 633
            +K+ VA +GP+SVG++A     F Y  GV    +  C     NH +++VGYG+   K+ 
Sbjct: 124 VLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSCTQNV-NHGVLVVGYGDLNGKE- 179
Query: 634 TSIPYWIVKNSWGSDWGEK 652
               YW+VKNSWG ++GE+
Sbjct: 180 ----YWLVKNSWGHNFGEE 194

>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3 Inhibitor Length = 219

Iteration: 1
 Score =  142 bits (357), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 81/196 (41%), Positives = 110/196 (56%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-- 353
           LP++ DWR +G +++VK QG C   WAFSAVG +EA   ++   L  LS Q LVDC    
Sbjct: 1   LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 354 -SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
             N GCNGG M  A QYIIDN G+ SD +YPYKA + +                 Y+ +P
Sbjct: 61  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELP 117
Query: 413 YGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVI-------DLNQRL----YG--TSI 457
           YG E+ +K+ VA +GP+SVG++A     F Y  GV        ++N  +    YG     
Sbjct: 118 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 177
Query: 458 PYWIVKNSWGSDWGEK 473
            YW+VKNSWG ++GE+
Sbjct: 178 EYWLVKNSWGHNFGEE 193

>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3 Inhibitor Length = 219

Iteration: 1
 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 101/199 (50%), Gaps = 26/199 (13%)
Query: 469 DWGEK---VEDKVGSSGNRTRDLELTGVLPS-------KLSRLATEKLVDCDM---SNGG 515
           DW EK    E K   S   +      G L +       KL  L+ + LVDC      N G
Sbjct: 6   DWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKG 65
Query: 516 CNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEE 575
           CNGG M  A QYIIDN G+ SD +YPYKA + +                 Y+ +PYG E+
Sbjct: 66  CNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELPYGRED 122
Query: 576 EMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDG 633
            +K+ VA +GP+SVG++A     F Y  GV    +  C     NH +++VGYG+   K+ 
Sbjct: 123 VLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSCTQNV-NHGVLVVGYGDLNGKE- 178
Query: 634 TSIPYWIVKNSWGSDWGEK 652
               YW+VKNSWG ++GE+
Sbjct: 179 ----YWLVKNSWGHNFGEE 193

>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq Length = 215

Iteration: 1
 Score =  142 bits (357), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 72/202 (35%), Positives = 113/202 (55%), Gaps = 15/202 (7%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P A DWRA G ++ VK+QG+C  CWAFSA+G VE    + G+ LT LS Q LV CD ++ 
Sbjct: 2   PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 357 GCNGGRMDDALQYII--DNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
           GC+GG M++A ++I+  +NG V ++ +YPY + E                   +  +P  
Sbjct: 62  GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ- 120
Query: 415 EEEEMKKWVATRGPLSVGMNANGLFYYSGGV--------IDLNQRLYG----TSIPYWIV 462
           +E ++  W+A  GP++V ++A+    Y+GGV        +D    L G     ++PYWI+
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVGYNDSAAVPYWII 180
Query: 463 KNSWGSDWGEKVEDKVGSSGNR 484
           KNSW + WGE+   ++    N+
Sbjct: 181 KNSWTTQWGEEGYIRIAKGSNQ 202

>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq Length = 215

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 88/157 (56%), Gaps = 12/157 (7%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYII--DNGGVVSDQAYPYKASESERGCLXXX 555
           L+ L+ + LV CD ++ GC+GG M++A ++I+  +NG V ++ +YPY + E         
Sbjct: 45  LTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTS 104
Query: 556 XXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKA 615
                     +  +P  +E ++  W+A  GP++V ++A+    Y+GGV+      C  + 
Sbjct: 105 GHTVGATITGHVELPQ-DEAQIAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEQ 159
Query: 616 QNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
            +H +++VGY      D  ++PYWI+KNSW + WGE+
Sbjct: 160 LDHGVLLVGY-----NDSAAVPYWIIKNSWTTQWGEE 191

>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As P1 Binding Elements Length = 222

Iteration: 1
 Score =  142 bits (357), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 81/196 (41%), Positives = 110/196 (56%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-- 353
           LP++ DWR +G +++VK QG C   WAFSAVG +EA   ++   L  LS Q LVDC    
Sbjct: 3   LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 62
Query: 354 -SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
             N GCNGG M  A QYIIDN G+ SD +YPYKA + +                 Y+ +P
Sbjct: 63  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELP 119
Query: 413 YGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVI-------DLNQRL----YG--TSI 457
           YG E+ +K+ VA +GP+SVG++A     F Y  GV        ++N  +    YG     
Sbjct: 120 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 179
Query: 458 PYWIVKNSWGSDWGEK 473
            YW+VKNSWG ++GE+
Sbjct: 180 EYWLVKNSWGHNFGEE 195

>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As P1 Binding Elements Length = 222

Iteration: 1
 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 101/199 (50%), Gaps = 26/199 (13%)
Query: 469 DWGEK---VEDKVGSSGNRTRDLELTGVLPS-------KLSRLATEKLVDCDM---SNGG 515
           DW EK    E K   S   +      G L +       KL  L+ + LVDC      N G
Sbjct: 8   DWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKG 67
Query: 516 CNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEE 575
           CNGG M  A QYIIDN G+ SD +YPYKA + +                 Y+ +PYG E+
Sbjct: 68  CNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK---CQYDSKYRAATCSKYTELPYGRED 124
Query: 576 EMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDG 633
            +K+ VA +GP+SVG++A     F Y  GV    +  C     NH +++VGYG+   K+ 
Sbjct: 125 VLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSCTQNV-NHGVLVVGYGDLNGKE- 180
Query: 634 TSIPYWIVKNSWGSDWGEK 652
               YW+VKNSWG ++GE+
Sbjct: 181 ----YWLVKNSWGHNFGEE 195

>pdb|1AIM|A Chain A, Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluoromethylketone Length = 215

Iteration: 1
 Score =  142 bits (357), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 72/202 (35%), Positives = 113/202 (55%), Gaps = 15/202 (7%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P A DWRA G ++ VK+QG+C  CWAFSA+G VE    + G+ LT LS Q LV CD ++ 
Sbjct: 2   PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 357 GCNGGRMDDALQYII--DNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
           GC+GG M++A ++I+  +NG V ++ +YPY + E                   +  +P  
Sbjct: 62  GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ- 120
Query: 415 EEEEMKKWVATRGPLSVGMNANGLFYYSGGV--------IDLNQRLYG----TSIPYWIV 462
           +E ++  W+A  GP++V ++A+    Y+GGV        +D    L G     ++PYWI+
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEALDHGVLLVGYNDSAAVPYWII 180
Query: 463 KNSWGSDWGEKVEDKVGSSGNR 484
           KNSW + WGE+   ++    N+
Sbjct: 181 KNSWTTQWGEEGYIRIAKGSNQ 202

>pdb|1AIM|A Chain A, Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluoromethylketone Length = 215

Iteration: 1
 Score =  102 bits (253), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 89/157 (56%), Gaps = 12/157 (7%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYII--DNGGVVSDQAYPYKASESERGCLXXX 555
           L+ L+ + LV CD ++ GC+GG M++A ++I+  +NG V ++ +YPY + E         
Sbjct: 45  LTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTS 104
Query: 556 XXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKA 615
                     +  +P  +E ++  W+A  GP++V ++A+    Y+GGV+      C  +A
Sbjct: 105 GHTVGATITGHVELPQ-DEAQIAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEA 159
Query: 616 QNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
            +H +++VGY      D  ++PYWI+KNSW + WGE+
Sbjct: 160 LDHGVLLVGY-----NDSAAVPYWIIKNSWTTQWGEE 191

>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S Length = 217

Iteration: 1
 Score =  141 bits (355), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/196 (41%), Positives = 110/196 (56%), Gaps = 21/196 (10%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-- 353
           LP++ DWR +G +++VK QG C   WAFSAVG +EA   ++   L  LS Q LVDC    
Sbjct: 1   LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 354 -SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
             N GCNGG M  A QYIIDN G+ SD +YPYKA + +                 Y+ +P
Sbjct: 61  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLK---CQYDSKYRAATCSKYTELP 117
Query: 413 YGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVI-------DLNQRL----YG--TSI 457
           YG E+ +K+ VA +GP+SVG++A     F Y  GV        ++N  +    YG     
Sbjct: 118 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 177
Query: 458 PYWIVKNSWGSDWGEK 473
            YW+VKNSWG ++GE+
Sbjct: 178 EYWLVKNSWGHNFGEE 193

>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S Length = 217

Iteration: 1
 Score =  108 bits (271), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 101/199 (50%), Gaps = 26/199 (13%)
Query: 469 DWGEK---VEDKVGSSGNRTRDLELTGVLPS-------KLSRLATEKLVDCDM---SNGG 515
           DW EK    E K   S   +      G L +       KL  L+ + LVDC      N G
Sbjct: 6   DWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKG 65
Query: 516 CNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEE 575
           CNGG M  A QYIIDN G+ SD +YPYKA + +                 Y+ +PYG E+
Sbjct: 66  CNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLK---CQYDSKYRAATCSKYTELPYGRED 122
Query: 576 EMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDG 633
            +K+ VA +GP+SVG++A     F Y  GV    +  C     NH +++VGYG+   K+ 
Sbjct: 123 VLKEAVANKGPVSVGVDARHPSFFLYRSGV--YYEPSCTQNV-NHGVLVVGYGDLNGKE- 178
Query: 634 TSIPYWIVKNSWGSDWGEK 652
               YW+VKNSWG ++GE+
Sbjct: 179 ----YWLVKNSWGHNFGEE 193

>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A Tetrafluorophenoxymethyl Ketone Inhibitor Length = 221

Iteration: 1
 Score =  140 bits (354), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 116/202 (57%), Gaps = 15/202 (7%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P A DWRA G ++ VK+QG+C  CWAFSA+G VE    + G+ LT L+ Q LV CD ++ 
Sbjct: 2   PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 357 GCNGGRMDDALQYII--DNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
           GC+GG M++A ++I+  +NG V ++ +YPY + E                   +  +P  
Sbjct: 62  GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ- 120
Query: 415 EEEEMKKWVATRGPLSVGMNANGLFYYSGGVID--LNQRL----------YGTSIPYWIV 462
           +E ++  W+A  GP++V ++A+    Y+GGV+   ++++L           G ++PYWI+
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVGYNDGAAVPYWII 180
Query: 463 KNSWGSDWGEKVEDKVGSSGNR 484
           KNSW + WGE+   ++    N+
Sbjct: 181 KNSWTTQWGEEGYIRIAKGSNQ 202

>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A Tetrafluorophenoxymethyl Ketone Inhibitor Length = 221

Iteration: 1
 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 89/157 (56%), Gaps = 12/157 (7%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYII--DNGGVVSDQAYPYKASESERGCLXXX 555
           L+ LA + LV CD ++ GC+GG M++A ++I+  +NG V ++ +YPY + E         
Sbjct: 45  LTNLAEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTS 104
Query: 556 XXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKA 615
                     +  +P  +E ++  W+A  GP++V ++A+    Y+GGV+      C  + 
Sbjct: 105 GHTVGATITGHVELPQ-DEAQIAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEQ 159
Query: 616 QNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
            +H +++VGY      DG ++PYWI+KNSW + WGE+
Sbjct: 160 LDHGVLLVGY-----NDGAAVPYWIIKNSWTTQWGEE 191

>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The Vinyl Sulfone Inhibitor Smdc-256047 Length = 215

Iteration: 1
 Score =  140 bits (354), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 116/202 (57%), Gaps = 15/202 (7%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P A DWRA G ++ VK+QG+C  CWAFSA+G VE    + G+ LT L+ Q LV CD ++ 
Sbjct: 2   PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 357 GCNGGRMDDALQYII--DNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
           GC+GG M++A ++I+  +NG V ++ +YPY + E                   +  +P  
Sbjct: 62  GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ- 120
Query: 415 EEEEMKKWVATRGPLSVGMNANGLFYYSGGVID--LNQRL----------YGTSIPYWIV 462
           +E ++  W+A  GP++V ++A+    Y+GGV+   ++++L           G ++PYWI+
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVGYNDGAAVPYWII 180
Query: 463 KNSWGSDWGEKVEDKVGSSGNR 484
           KNSW + WGE+   ++    N+
Sbjct: 181 KNSWTTQWGEEGYIRIAKGSNQ 202

>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The Vinyl Sulfone Inhibitor Smdc-256047 Length = 215

Iteration: 1
 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 89/157 (56%), Gaps = 12/157 (7%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYII--DNGGVVSDQAYPYKASESERGCLXXX 555
           L+ LA + LV CD ++ GC+GG M++A ++I+  +NG V ++ +YPY + E         
Sbjct: 45  LTNLAEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTS 104
Query: 556 XXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKA 615
                     +  +P  +E ++  W+A  GP++V ++A+    Y+GGV+      C  + 
Sbjct: 105 GHTVGATITGHVELPQ-DEAQIAAWLAVNGPVAVAVDASSWMTYTGGVM----TSCVSEQ 159
Query: 616 QNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
            +H +++VGY      DG ++PYWI+KNSW + WGE+
Sbjct: 160 LDHGVLLVGY-----NDGAAVPYWIIKNSWTTQWGEE 191

>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With Proline Specificity From Ginger Rhizome, Zingiber Officinale Length = 221

Iteration: 1
 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/193 (40%), Positives = 105/193 (54%), Gaps = 18/193 (9%)
Query: 294 DDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM 353
           DDLP++ DWR  G +  VK QG C  CWAFS V  VE ++ I    L  LS QQLVDC  
Sbjct: 1   DDLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTT 60
Query: 354 SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPY 413
           +N GC GG M+ A Q+I++NGG+ S++ YPY+  +   G               Y  +P 
Sbjct: 61  ANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQD---GICNSTVNAPVVSIDSYENVPS 117
Query: 414 GEEEEMKKWVATRGPLSVGMNANGLFY--YSGGV------IDLNQRL----YGTS--IPY 459
             E+ ++K VA + P+SV M+A G  +  Y  G+      I  N  L    YGT     +
Sbjct: 118 HNEQSLQKAVANQ-PVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYGTENDKDF 176
Query: 460 WIVKNSWGSDWGE 472
           WIVKNSWG +WGE
Sbjct: 177 WIVKNSWGKNWGE 189

>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With Proline Specificity From Ginger Rhizome, Zingiber Officinale Length = 221

Iteration: 1
 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 90/161 (55%), Gaps = 15/161 (9%)
Query: 493 VLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCL 552
           ++   L  L+ ++LVDC  +N GC GG M+ A Q+I++NGG+ S++ YPY+  +   G  
Sbjct: 42  IVTGDLISLSEQQLVDCTTANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQD---GIC 98
Query: 553 XXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRL 610
                        Y  +P   E+ ++K VA + P+SV M+A G  +  Y  G+   +   
Sbjct: 99  NSTVNAPVVSIDSYENVPSHNEQSLQKAVANQ-PVSVTMDAAGRDFQLYRSGIFTGS--- 154
Query: 611 CNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
           CN  A NHAL +VGYG E  KD     +WIVKNSWG +WGE
Sbjct: 155 CNISA-NHALTVVGYGTENDKD-----FWIVKNSWGKNWGE 189

>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant Cysteine Protease Ervatamin-C Refinement With Cdna Derived Amino Acid Sequence Length = 208

Iteration: 1
 Score =  135 bits (341), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 77/188 (40%), Positives = 103/188 (54%), Gaps = 16/188 (8%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           LPE  DWR +G ++ VK QGKC  CWAFS V  VE+++ I+  +L  LS QQLVDC+  N
Sbjct: 1   LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKKN 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGE 415
            GC GG    A QYIIDNGG+ ++  YPYKA +    C              Y  +P+  
Sbjct: 61  HGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGP--C---RAAKKVVRIDGYKGVPHCN 115
Query: 416 EEEMKKWVATRGPLSVGMNANG--LFYYSGGVID------LNQR--LYGTSIPYWIVKNS 465
           E  +KK VA++ P  V ++A+     +Y  G+        LN    + G    YWIV+NS
Sbjct: 116 ENALKKAVASQ-PSVVAIDASSKQFQHYKSGIFSGPCGTKLNHGVVIVGYWKDYWIVRNS 174
Query: 466 WGSDWGEK 473
           WG  WGE+
Sbjct: 175 WGRYWGEQ 182

>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant Cysteine Protease Ervatamin-C Refinement With Cdna Derived Amino Acid Sequence Length = 208

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 81/157 (51%), Gaps = 21/157 (13%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXX 557
           L  L+ ++LVDC+  N GC GG    A QYIIDNGG+ ++  YPYKA +    C      
Sbjct: 45  LISLSEQQLVDCNKKNHGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGP--C---RAA 99
Query: 558 XXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVIDLNQRLCNPKA 615
                   Y  +P+  E  +KK VA++ P  V ++A+     +Y  G+       C  K 
Sbjct: 100 KKVVRIDGYKGVPHCNENALKKAVASQ-PSVVAIDASSKQFQHYKSGIF---SGPCGTKL 155
Query: 616 QNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
            NH ++IVGY ++         YWIV+NSWG  WGE+
Sbjct: 156 -NHGVVIVGYWKD---------YWIVRNSWGRYWGEQ 182

>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine Protease Ervatamin C Length = 208

Iteration: 1
 Score =  135 bits (339), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 76/188 (40%), Positives = 103/188 (54%), Gaps = 16/188 (8%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           LPE  DWR +G ++ VK QG C  CWAFS V  VE+++ I+  +L  LS Q+LVDCD  N
Sbjct: 1   LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKN 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGE 415
            GC GG    A QYII+NGG+ +   YPYKA +    C              Y+ +P+  
Sbjct: 61  HGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGP--C---QAASKVVSIDGYNGVPFCN 115
Query: 416 EEEMKKWVATRGPLSVGMNANGLFY--YSGGVID------LNQ--RLYGTSIPYWIVKNS 465
           E  +K+ VA + P +V ++A+   +  YS G+        LN    + G    YWIV+NS
Sbjct: 116 EXALKQAVAVQ-PSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGYQANYWIVRNS 174
Query: 466 WGSDWGEK 473
           WG  WGEK
Sbjct: 175 WGRYWGEK 182

>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine Protease Ervatamin C Length = 208

Iteration: 1
 Score = 86.3 bits (212), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 72/195 (36%), Positives = 94/195 (48%), Gaps = 32/195 (16%)
Query: 462 VKN--SWGSDWGEKVEDKVGSSGNRTRDLELTGVLPSKLSRLATEKLVDCDMSNGGCNGG 519
           VKN  S GS W       V  S N+ R    TG L S    L+ ++LVDCD  N GC GG
Sbjct: 16  VKNQGSCGSCWAFSTVSTV-ESINQIR----TGNLIS----LSEQELVDCDKKNHGCLGG 66
Query: 520 RMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKK 579
               A QYII+NGG+ +   YPYKA +    C              Y+ +P+  E  +K+
Sbjct: 67  AFVFAYQYIINNGGIDTQANYPYKAVQGP--C---QAASKVVSIDGYNGVPFCNEXALKQ 121
Query: 580 WVATRGPLSVGMNANGLFY--YSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIP 637
            VA + P +V ++A+   +  YS G+       C  K  NH + IVGY            
Sbjct: 122 AVAVQ-PSTVAIDASSAQFQQYSSGIF---SGPCGTKL-NHGVTIVGYQAN--------- 167
Query: 638 YWIVKNSWGSDWGEK 652
           YWIV+NSWG  WGEK
Sbjct: 168 YWIVRNSWGRYWGEK 182

>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine Endopeptidase Functioning In Programmed Cell Death Of Ricinus Communis Endosperm Length = 229

Iteration: 1
 Score =  132 bits (333), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/194 (39%), Positives = 109/194 (56%), Gaps = 19/194 (9%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-S 354
           +P + DWR +G ++ VK+QG+C  CWAFS +  VE ++ I+ N L  LS Q+LVDCD   
Sbjct: 2   VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 355 NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
           N GCNGG MD A ++I   GG+ ++  YPY+A +    C              +  +P  
Sbjct: 62  NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGT--CDVSKENAPAVSIDGHENVPEN 119
Query: 415 EEEEMKKWVATRGPLSVGMNANG--LFYYSGGVI------DLNQRL----YGTSI---PY 459
           +E  + K VA + P+SV ++A G    +YS GV       +L+  +    YGT+I    Y
Sbjct: 120 DENALLKAVANQ-PVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKY 178
Query: 460 WIVKNSWGSDWGEK 473
           W VKNSWG +WGEK
Sbjct: 179 WTVKNSWGPEWGEK 192

>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine Endopeptidase Functioning In Programmed Cell Death Of Ricinus Communis Endosperm Length = 229

Iteration: 1
 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 87/163 (53%), Gaps = 14/163 (8%)
Query: 493 VLPSKLSRLATEKLVDCDM-SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGC 551
           +  +KL  L+ ++LVDCD   N GCNGG MD A ++I   GG+ ++  YPY+A +    C
Sbjct: 41  IKTNKLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGT--C 98
Query: 552 LXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVIDLNQR 609
                         +  +P  +E  + K VA + P+SV ++A G    +YS GV   +  
Sbjct: 99  DVSKENAPAVSIDGHENVPENDENALLKAVANQ-PVSVAIDAGGSDFQFYSEGVFTGS-- 155
Query: 610 LCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
            C  +  +H + IVGYG     DGT   YW VKNSWG +WGEK
Sbjct: 156 -CGTEL-DHGVAIVGYG--TTIDGTK--YWTVKNSWGPEWGEK 192

>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease Ervatamin-A Complexed With Irreversible Inhibitor E-64 Length = 209

Iteration: 1
 Score =  132 bits (331), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 76/188 (40%), Positives = 100/188 (53%), Gaps = 16/188 (8%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           LPE  DWRA+G +  +K QGKC  CWAFS V  VE+++ I+  +L  LS QQLVDC   N
Sbjct: 1   LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKKN 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGE 415
            GC GG  D A QYII NGG+ ++  YPYKA +    C                 +P   
Sbjct: 61  HGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGP--C---RAAKKVVRIDGCKGVPQCN 115
Query: 416 EEEMKKWVATRGPLSVGMNANG--LFYYSGGVI------DLNQR--LYGTSIPYWIVKNS 465
           E  +K  VA++ P  V ++A+     +Y GG+        LN    + G    YWIV+NS
Sbjct: 116 ENALKNAVASQ-PSVVAIDASSKQFQHYKGGIFTGPCGTKLNHGVVIVGYGKDYWIVRNS 174
Query: 466 WGSDWGEK 473
           WG  WGE+
Sbjct: 175 WGRHWGEQ 182

>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease Ervatamin-A Complexed With Irreversible Inhibitor E-64 Length = 209

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 79/157 (50%), Gaps = 21/157 (13%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXX 557
           L  L+ ++LVDC   N GC GG  D A QYII NGG+ ++  YPYKA +    C      
Sbjct: 45  LISLSEQQLVDCSKKNHGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGP--C---RAA 99
Query: 558 XXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVIDLNQRLCNPKA 615
                      +P   E  +K  VA++ P  V ++A+     +Y GG+       C  K 
Sbjct: 100 KKVVRIDGCKGVPQCNENALKNAVASQ-PSVVAIDASSKQFQHYKGGIF---TGPCGTKL 155
Query: 616 QNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
            NH ++IVGYG++         YWIV+NSWG  WGE+
Sbjct: 156 -NHGVVIVGYGKD---------YWIVRNSWGRHWGEQ 182

>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K Length = 314

Iteration: 1
 Score =  132 bits (331), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 143/300 (47%), Gaps = 41/300 (13%)
Query: 194 ELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDS---GTAVFGVNKFFDL-SESD 249
           EL  + H K Y++  D + R   +  N++    +  E S    T    +N   D+ SE  
Sbjct: 12  ELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEEV 71
Query: 250 LQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVIS 309
           +Q++TGL +  +      +L  P      + E RA            P++ D+R +G ++
Sbjct: 72  VQKMTGLKVPLSHSRSNDTLYIP------EWEGRA------------PDSVDYRKKGYVT 113
Query: 310 KVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQY 369
            VK QG+C  CWAFS+VG +E     +   L  LS Q LVDC   N GC GG M +A QY
Sbjct: 114 PVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQY 173
Query: 370 IIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPL 429
           +  N G+ S+ AYPY   E    C+             Y  IP G E+ +K+ VA  GP+
Sbjct: 174 VQKNRGIDSEDAYPYVGQEES--CM-YNPTGKAAKCRGYREIPEGNEKALKRAVARVGPV 230
Query: 430 SVGMNAN--GLFYYSGGVI--------DLNQRL----YGTSI--PYWIVKNSWGSDWGEK 473
           SV ++A+     +YS GV         +LN  +    YG      +WI+KNSWG +WG K
Sbjct: 231 SVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNK 290

>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K Length = 314

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 83/158 (52%), Gaps = 12/158 (7%)
Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXX 556
           KL  L+ + LVDC   N GC GG M +A QY+  N G+ S+ AYPY   E    C+    
Sbjct: 143 KLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES--CM-YNP 199
Query: 557 XXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPK 614
                    Y  IP G E+ +K+ VA  GP+SV ++A+     +YS GV       CN  
Sbjct: 200 TGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV--YYDESCNSD 257
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
             NHA++ VGYG ++        +WI+KNSWG +WG K
Sbjct: 258 NLNHAVLAVGYGIQKGNK-----HWIIKNSWGENWGNK 290

>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio Molitor Larval Midgut Length = 329

Iteration: 1
 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 146/294 (49%), Gaps = 44/294 (14%)
Query: 200 HDKVYSSVEDLLRRHENFVTNVEKAEDYQSE-DSGTAVF--GVNKFFDLSESDLQQLTGL 256
           H K YSS  + +RR   F  NV K  ++ ++ + G   +   +N+F D+S+ +   L  +
Sbjct: 34  HKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSKEEF--LAYV 91
Query: 257 NLDSTLEDIQP-SLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQG 315
           N     +   P +L+ P+ S++                  L  + DWR+  V S+VK+QG
Sbjct: 92  NRGKAQKPKHPENLRMPYVSSKKP----------------LAASVDWRSNAV-SEVKDQG 134
Query: 316 KCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS--NGGCNGGRMDDALQYIIDN 373
           +C   W+FS  G VE   A+Q   LT LS Q L+DC  S  N GC+GG MD A  YI D 
Sbjct: 135 QCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYIHDY 194
Query: 374 GGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGM 433
            G++S+ AYPY   E++                 Y  +P G+E  +   V   GP++V +
Sbjct: 195 -GIMSESAYPY---EAQGDYCRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAI 250
Query: 434 NA-NGLFYYSGGVI--------DLNQRL----YGT--SIPYWIVKNSWGSDWGE 472
           +A + L +YSGG+         DLN  +    YG+     YWI+KNSWGS WGE
Sbjct: 251 DATDELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGE 304

>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio Molitor Larval Midgut Length = 329

Iteration: 1
 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 87/158 (55%), Gaps = 14/158 (8%)
Query: 497 KLSRLATEKLVDCDMS--NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
           +L+ L+ + L+DC  S  N GC+GG MD A  YI D G ++S+ AYPY   E++      
Sbjct: 158 RLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYIHDYG-IMSESAYPY---EAQGDYCRF 213
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNA-NGLFYYSGGVIDLNQRLCNP 613
                      Y  +P G+E  +   V   GP++V ++A + L +YSGG+     + CN 
Sbjct: 214 DSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGL--FYDQTCNQ 271
Query: 614 KAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
              NH +++VGYG +  +D     YWI+KNSWGS WGE
Sbjct: 272 SDLNHGVLVVGYGSDNGQD-----YWILKNSWGSGWGE 304

>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/207 (37%), Positives = 110/207 (53%), Gaps = 23/207 (11%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           LP+  DWR+ G +  +K+QG+C  CWAFS +  VE ++ I    L  LS Q+LVDC  + 
Sbjct: 1   LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 356 G--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPY 413
              GC+GG M D  Q+II+NGG+ ++  YPY A E +  C              Y  +PY
Sbjct: 61  NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQ--CNLDLQQEKYVSIDTYENVPY 118
Query: 414 GEEEEMKKWVATRGPLSVGMNANG--LFYYSGGV--------IDLNQRL--YGT--SIPY 459
             E  ++  VA + P+SV + A G    +YS G+        +D    +  YGT   I Y
Sbjct: 119 NNEWALQTAVAYQ-PVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDY 177
Query: 460 WIVKNSWGSDWGE----KVEDKVGSSG 482
           WIVKNSWG+ WGE    +++  VG  G
Sbjct: 178 WIVKNSWGTTWGEEGYMRIQRNVGGVG 204

>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 85/164 (51%), Gaps = 16/164 (9%)
Query: 493 VLPSKLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERG 550
           +    L  L+ ++LVDC  +    GC+GG M D  Q+II+NGG+ ++  YPY A E +  
Sbjct: 40  IATGDLISLSEQELVDCGRTQNTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQ-- 97
Query: 551 CLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVIDLNQ 608
           C              Y  +PY  E  ++  VA + P+SV + A G    +YS G+     
Sbjct: 98  CNLDLQQEKYVSIDTYENVPYNNEWALQTAVAYQ-PVSVALEAAGYNFQHYSSGIF---T 153
Query: 609 RLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
             C   A +HA+ IVGYG E       I YWIVKNSWG+ WGE+
Sbjct: 154 GPCG-TAVDHAVTIVGYGTE-----GGIDYWIVKNSWGTTWGEE 191

>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+ Length = 218

Iteration: 1
 Score =  129 bits (324), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 78/207 (37%), Positives = 109/207 (52%), Gaps = 23/207 (11%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           LP   DWR+ G +  +K QG+C  CWAFSA+  VE ++ I    L  LS Q+L+DC  + 
Sbjct: 1   LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 356 G--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPY 413
              GCNGG + D  Q+II+NGG+ +++ YPY A + E  C              Y  +PY
Sbjct: 61  NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGE--CNVDLQNEKYVTIDTYENVPY 118
Query: 414 GEEEEMKKWVATRGPLSVGMNANGLFY--YSGGV--------IDLNQRL--YGTS--IPY 459
             E  ++  V T  P+SV ++A G  +  YS G+        ID    +  YGT   I Y
Sbjct: 119 NNEWALQTAV-TYQPVSVALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYGTEGGIDY 177
Query: 460 WIVKNSWGSDWGE----KVEDKVGSSG 482
           WIVKNSW + WGE    ++   VG +G
Sbjct: 178 WIVKNSWDTTWGEEGYMRILRNVGGAG 204

>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+ Length = 218

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 63/169 (37%), Positives = 89/169 (52%), Gaps = 24/169 (14%)
Query: 490 LTGVLPSKLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASES 547
           +TGVL S    L+ ++L+DC  +    GCNGG + D  Q+II+NGG+ +++ YPY A + 
Sbjct: 41  VTGVLIS----LSEQELIDCGRTQNTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDG 96
Query: 548 ERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVID 605
           E  C              Y  +PY  E  ++  V T  P+SV ++A G  +  YS G+  
Sbjct: 97  E--CNVDLQNEKYVTIDTYENVPYNNEWALQTAV-TYQPVSVALDAAGDAFKQYSSGI-- 151
Query: 606 LNQRLCNP--KAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
                  P   A +HA+ IVGYG E       I YWIVKNSW + WGE+
Sbjct: 152 ----FTGPCGTAIDHAVTIVGYGTE-----GGIDYWIVKNSWDTTWGEE 191

>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray Crystal Structure Of A Plant Cysteine Protease Ervatamin B: Insight Into The Structural Basis Of Its Stability And Substrate Specificity Length = 215

Iteration: 1
 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/204 (37%), Positives = 110/204 (53%), Gaps = 23/204 (11%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           LP   DWR++G ++ +K Q +C  CWAFSAV  VE+++ I+   L  LS Q+LVDCD ++
Sbjct: 1   LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGE 415
            GCNGG M++A QYII NGG+ + Q YPY A +                   + R+    
Sbjct: 61  HGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGS----CKPYRLRVVSINGFQRVTRNN 116
Query: 416 EEEMKKWVATRGPLSVGMNANG--LFYYSGGVID------LNQRL----YGTSIP--YWI 461
           E  ++  VA++ P+SV + A G    +YS G+         N  +    YGT     YWI
Sbjct: 117 ESALQSAVASQ-PVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGTQSGKNYWI 175
Query: 462 VKNSWGSDWGEK----VEDKVGSS 481
           V+NSWG +WG +    +E  V SS
Sbjct: 176 VRNSWGQNWGNQGYIWMERNVASS 199

>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray Crystal Structure Of A Plant Cysteine Protease Ervatamin B: Insight Into The Structural Basis Of Its Stability And Substrate Specificity Length = 215

Iteration: 1
 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 87/158 (55%), Gaps = 16/158 (10%)
Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXX 556
           +L  L+ ++LVDCD ++ GCNGG M++A QYII NGG+ + Q YPY A +          
Sbjct: 44  QLISLSEQELVDCDTASHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGS----CKPY 99
Query: 557 XXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVIDLNQRLCNPK 614
                    + R+    E  ++  VA++ P+SV + A G    +YS G+       C   
Sbjct: 100 RLRVVSINGFQRVTRNNESALQSAVASQ-PVSVTVEAAGAPFQHYSSGIFT---GPCG-T 154
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           AQNH ++IVGYG +  K+     YWIV+NSWG +WG +
Sbjct: 155 AQNHGVVIVGYGTQSGKN-----YWIVRNSWGQNWGNQ 187

>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine Protease Of T. Brucei Rhodesiense, Bound To Inhibitor K777 Length = 215

Iteration: 1
 Score =  126 bits (317), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 104/190 (54%), Gaps = 15/190 (7%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P A DWR +G ++ VK+QG+C  CWAFS +G +E    + GN L  LS Q LV CD  + 
Sbjct: 2   PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTIDF 61
Query: 357 GCNGGRMDDALQYIID-NGG-VVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
           GC GG MD+A  +I++ NGG V ++ +YPY +   E+                +  +P  
Sbjct: 62  GCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLPQ- 120
Query: 415 EEEEMKKWVATRGPLSVGMNANGLFYYSGGV--------IDLNQRLYG----TSIPYWIV 462
           +E+ +  ++A  GPL++ ++A     Y+GG+        +D    L G    ++ PYWI+
Sbjct: 121 DEDAIAAYLAENGPLAIAVDATSFMDYNGGILTSCTSEQLDHGVLLVGYNDASNPPYWII 180
Query: 463 KNSWGSDWGE 472
           KNSW + WGE
Sbjct: 181 KNSWSNMWGE 190

>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine Protease Of T. Brucei Rhodesiense, Bound To Inhibitor K777 Length = 215

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 12/161 (7%)
Query: 493 VLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIID-NGG-VVSDQAYPYKASESERG 550
           V  + L  L+ + LV CD  + GC GG MD+A  +I++ NGG V ++ +YPY +   E+ 
Sbjct: 40  VAGNPLVSLSEQMLVSCDTIDFGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQP 99
Query: 551 CLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRL 610
                          +  +P  +E+ +  ++A  GPL++ ++A     Y+GG++      
Sbjct: 100 QCQMNGHEIGAAITDHVDLPQ-DEDAIAAYLAENGPLAIAVDATSFMDYNGGIL----TS 154
Query: 611 CNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
           C  +  +H +++VGY      D ++ PYWI+KNSW + WGE
Sbjct: 155 CTSEQLDHGVLLVGY-----NDASNPPYWIIKNSWSNMWGE 190

>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score =  126 bits (316), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/207 (37%), Positives = 109/207 (52%), Gaps = 23/207 (11%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           LP+  DWR+ G +  +K+QG+C   WAFS +  VE ++ I    L  LS Q+LVDC  + 
Sbjct: 1   LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 356 G--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPY 413
              GC+GG M D  Q+II+NGG+ ++  YPY A E +  C              Y  +PY
Sbjct: 61  NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQ--CNLDLQQEKYVSIDTYENVPY 118
Query: 414 GEEEEMKKWVATRGPLSVGMNANGLFY--YSGGV--------IDLNQRL--YGT--SIPY 459
             E  ++  VA + P+SV + A G  +  YS G+        +D    +  YGT   I Y
Sbjct: 119 NNEWALQTAVAYQ-PVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDY 177
Query: 460 WIVKNSWGSDWGE----KVEDKVGSSG 482
           WIVKNSWG+ WGE    +++  VG  G
Sbjct: 178 WIVKNSWGTTWGEEGYMRIQRNVGGVG 204

>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 85/164 (51%), Gaps = 16/164 (9%)
Query: 493 VLPSKLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERG 550
           +    L  L+ ++LVDC  +    GC+GG M D  Q+II+NGG+ ++  YPY A E +  
Sbjct: 40  IATGDLISLSEQELVDCGRTQNTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQ-- 97
Query: 551 CLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQ 608
           C              Y  +PY  E  ++  VA + P+SV + A G  +  YS G+     
Sbjct: 98  CNLDLQQEKYVSIDTYENVPYNNEWALQTAVAYQ-PVSVALEAAGYNFQHYSSGIF---T 153
Query: 609 RLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
             C   A +HA+ IVGYG E       I YWIVKNSWG+ WGE+
Sbjct: 154 GPCG-TAVDHAVTIVGYGTE-----GGIDYWIVKNSWGTTWGEE 191

>pdb|3HWN|A Chain A, Cathepsin L With Az13010160 Length = 258

Iteration: 1
 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 107/220 (48%), Gaps = 34/220 (15%)
Query: 282 MRAFQFNSLRHGD--------DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMH 333
           M  FQ    R G         + P + DWR +G ++ VK QG+C  CWAFSA G +E   
Sbjct: 17  MNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQM 76
Query: 334 AIQGNSLTELSVQQLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESER 391
             +   L  LS Q LVDC    G  GCNGG MD A QY+ DNGG+ S+++YPY+A+E   
Sbjct: 77  FRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES- 135
Query: 392 GCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSG----- 443
                           +  IP  +E+ + K VAT GP+SV ++A     LFY  G     
Sbjct: 136 --CKYNPKYSVANDAGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEP 192
Query: 444 ---------GVIDLNQRLYGTSI---PYWIVKNSWGSDWG 471
                    GV+ +      T      YW+VKNSWG +WG
Sbjct: 193 DCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWG 232

>pdb|3HWN|A Chain A, Cathepsin L With Az13010160 Length = 258

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 13/159 (8%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
           +L  L+ + LVDC    G  GCNGG MD A QY+ DNGG+ S+++YPY+A+E        
Sbjct: 82  RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKY 138
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
                      +  IP  +E+ + K VAT GP+SV ++A     LFY  G   + +   C
Sbjct: 139 NPKYSVANDAGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---C 194
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
           + +  +H +++VGYG E  +   +  YW+VKNSWG +WG
Sbjct: 195 SSEDMDHGVLVVGYGFESTESDNN-KYWLVKNSWGEEWG 232

>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized Norleucine Aldehyde Length = 214

Iteration: 1
 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/193 (38%), Positives = 102/193 (52%), Gaps = 19/193 (9%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P++ D+R +G ++ VK QG+C  CWAFS+VG +E     +   L  LS Q LVDC   N 
Sbjct: 1   PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 60
Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEE 416
           GC GG M +A QY+  N G+ S+ AYPY   E    C+             Y  IP G E
Sbjct: 61  GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES--CM-YNPTGKAAKCRGYREIPEGNE 117
Query: 417 EEMKKWVATRGPLSVGMNAN--GLFYYSGGVI--------DLNQRL----YGTSI--PYW 460
           + +K+ VA  GP+SV ++A+     +YS GV         +LN  +    YG      +W
Sbjct: 118 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 177
Query: 461 IVKNSWGSDWGEK 473
           I+KNSWG +WG K
Sbjct: 178 IIKNSWGENWGNK 190

>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized Norleucine Aldehyde Length = 214

Iteration: 1
 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 83/158 (52%), Gaps = 12/158 (7%)
Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXX 556
           KL  L+ + LVDC   N GC GG M +A QY+  N G+ S+ AYPY   E    C+    
Sbjct: 43  KLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES--CM-YNP 99
Query: 557 XXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPK 614
                    Y  IP G E+ +K+ VA  GP+SV ++A+     +YS GV       CN  
Sbjct: 100 TGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV--YYDESCNSD 157
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
             NHA++ VGYG ++        +WI+KNSWG +WG K
Sbjct: 158 NLNHAVLAVGYGIQKGNK-----HWIIKNSWGENWGNK 190

>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K In Complex With The Covalent Inhibitor Nvp-Abe854 Length = 217

Iteration: 1
 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/193 (38%), Positives = 102/193 (52%), Gaps = 19/193 (9%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P++ D+R +G ++ VK QG+C  CWAFS+VG +E     +   L  LS Q LVDC   N 
Sbjct: 4   PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 63
Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEE 416
           GC GG M +A QY+  N G+ S+ AYPY   E    C+             Y  IP G E
Sbjct: 64  GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES--CM-YNPTGKAAKCRGYREIPEGNE 120
Query: 417 EEMKKWVATRGPLSVGMNAN--GLFYYSGGVI--------DLNQRL----YGTSI--PYW 460
           + +K+ VA  GP+SV ++A+     +YS GV         +LN  +    YG      +W
Sbjct: 121 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 180
Query: 461 IVKNSWGSDWGEK 473
           I+KNSWG +WG K
Sbjct: 181 IIKNSWGENWGNK 193

>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K In Complex With The Covalent Inhibitor Nvp-Abe854 Length = 217

Iteration: 1
 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 83/158 (52%), Gaps = 12/158 (7%)
Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXX 556
           KL  L+ + LVDC   N GC GG M +A QY+  N G+ S+ AYPY   E    C+    
Sbjct: 46  KLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES--CM-YNP 102
Query: 557 XXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPK 614
                    Y  IP G E+ +K+ VA  GP+SV ++A+     +YS GV       CN  
Sbjct: 103 TGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV--YYDESCNSD 160
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
             NHA++ VGYG ++        +WI+KNSWG +WG K
Sbjct: 161 NLNHAVLAVGYGIQKGNK-----HWIIKNSWGENWGNK 193

>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent Vinyl Sulfone Inhibitor Length = 215

Iteration: 1
 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/193 (38%), Positives = 102/193 (52%), Gaps = 19/193 (9%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P++ D+R +G ++ VK QG+C  CWAFS+VG +E     +   L  LS Q LVDC   N 
Sbjct: 2   PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEE 416
           GC GG M +A QY+  N G+ S+ AYPY   E    C+             Y  IP G E
Sbjct: 62  GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES--CM-YNPTGKAAKCRGYREIPEGNE 118
Query: 417 EEMKKWVATRGPLSVGMNAN--GLFYYSGGVI--------DLNQRL----YGTSI--PYW 460
           + +K+ VA  GP+SV ++A+     +YS GV         +LN  +    YG      +W
Sbjct: 119 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 178
Query: 461 IVKNSWGSDWGEK 473
           I+KNSWG +WG K
Sbjct: 179 IIKNSWGENWGNK 191

>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent Vinyl Sulfone Inhibitor Length = 215

Iteration: 1
 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 83/158 (52%), Gaps = 12/158 (7%)
Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXX 556
           KL  L+ + LVDC   N GC GG M +A QY+  N G+ S+ AYPY   E    C+    
Sbjct: 44  KLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES--CM-YNP 100
Query: 557 XXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPK 614
                    Y  IP G E+ +K+ VA  GP+SV ++A+     +YS GV       CN  
Sbjct: 101 TGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV--YYDESCNSD 158
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
             NHA++ VGYG ++        +WI+KNSWG +WG K
Sbjct: 159 NLNHAVLAVGYGIQKGNK-----HWIIKNSWGENWGNK 191

>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In Compl Chondroitin-4-Sulfate Length = 215

Iteration: 1
 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/191 (38%), Positives = 102/191 (53%), Gaps = 19/191 (9%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P++ D+R +G ++ VK QG+C  CWAFS+VG +E     +   L  LS Q LVDC   N 
Sbjct: 2   PDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEE 416
           GC GG M +A QY+  N G+ S+ AYPY   E    C+             Y  IP G E
Sbjct: 62  GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES--CM-YNPTGKAAKCRGYREIPEGNE 118
Query: 417 EEMKKWVATRGPLSVGMNAN--GLFYYSGGVI--------DLNQRL----YGTSI--PYW 460
           + +K+ VA  GP+SV ++A+     +YS GV         +LN  +    YG S    +W
Sbjct: 119 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESKGNKHW 178
Query: 461 IVKNSWGSDWG 471
           I+KNSWG +WG
Sbjct: 179 IIKNSWGENWG 189

>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In Compl Chondroitin-4-Sulfate Length = 215

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 82/156 (52%), Gaps = 12/156 (7%)
Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXX 556
           KL  L+ + LVDC   N GC GG M +A QY+  N G+ S+ AYPY   E    C+    
Sbjct: 44  KLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES--CM-YNP 100
Query: 557 XXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPK 614
                    Y  IP G E+ +K+ VA  GP+SV ++A+     +YS GV       CN  
Sbjct: 101 TGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV--YYDESCNSD 158
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
             NHA++ VGYGE +        +WI+KNSWG +WG
Sbjct: 159 NLNHAVLAVGYGESKGNK-----HWIIKNSWGENWG 189

>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible Inhibition Of Human Cathepsin L By Their Respective Dipeptidyl Glyoxal And Diazomethylketone Inhibitors Length = 221

Iteration: 1
 Score =  122 bits (307), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/199 (38%), Positives = 102/199 (51%), Gaps = 26/199 (13%)
Query: 295 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS 354
           + P + DWR +G ++ VK QG+C  CWAFSA G +E     +   L  LS Q LVDC   
Sbjct: 1   EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 355 NG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
            G  GCNGG MD A QY+ DNGG+ S+++YPY+A+E                   +  IP
Sbjct: 61  QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKYNPKYSVANDTGFVDIP 117
Query: 413 YGEEEEMKKWVATRGPLSVGMNANG---LFYYSG--------------GVIDLNQRLYGT 455
             +E+ + K VAT GP+SV ++A     LFY  G              GV+ +      T
Sbjct: 118 -KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFEST 176
Query: 456 SI---PYWIVKNSWGSDWG 471
                 YW+VKNSWG +WG
Sbjct: 177 ESDNNKYWLVKNSWGEEWG 195

>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible Inhibition Of Human Cathepsin L By Their Respective Dipeptidyl Glyoxal And Diazomethylketone Inhibitors Length = 221

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 13/159 (8%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
           +L  L+ + LVDC    G  GCNGG MD A QY+ DNGG+ S+++YPY+A+E        
Sbjct: 45  RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKY 101
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
                      +  IP  +E+ + K VAT GP+SV ++A     LFY  G   + +   C
Sbjct: 102 NPKYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---C 157
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
           + +  +H +++VGYG E  +   +  YW+VKNSWG +WG
Sbjct: 158 SSEDMDHGVLVVGYGFESTESDNN-KYWLVKNSWGEEWG 195

>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor Length = 215

Iteration: 1
 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/193 (37%), Positives = 101/193 (52%), Gaps = 19/193 (9%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P++ D+R +G ++ VK QG+C  CWAFS+VG +E     +   L  LS Q LVDC   N 
Sbjct: 2   PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEE 416
           GC GG M +A QY+  N G+ S+ AYPY   +    C+             Y  IP G E
Sbjct: 62  GCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDES--CM-YNPTGKAAKCRGYREIPEGNE 118
Query: 417 EEMKKWVATRGPLSVGMNAN--GLFYYSGGVI--------DLNQRL----YGTSI--PYW 460
           + +K+ VA  GP+SV ++A+     +YS GV         +LN  +    YG      +W
Sbjct: 119 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQKGNKHW 178
Query: 461 IVKNSWGSDWGEK 473
           I+KNSWG  WG K
Sbjct: 179 IIKNSWGESWGNK 191

>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor Length = 215

Iteration: 1
 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 84/159 (52%), Gaps = 14/159 (8%)
Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXX 556
           KL  L+ + LVDC   N GC GG M +A QY+  N G+ S+ AYPY   +    C+    
Sbjct: 44  KLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDES--CM-YNP 100
Query: 557 XXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGV-IDLNQRLCNP 613
                    Y  IP G E+ +K+ VA  GP+SV ++A+     +YS GV  D N   C+ 
Sbjct: 101 TGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDEN---CSS 157
Query: 614 KAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
              NHA++ VGYG ++        +WI+KNSWG  WG K
Sbjct: 158 DNLNHAVLAVGYGIQKGNK-----HWIIKNSWGESWGNK 191

>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With Az12878478 Length = 220

Iteration: 1
 Score =  122 bits (306), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/197 (38%), Positives = 101/197 (51%), Gaps = 26/197 (13%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P + DWR +G ++ VK QG+C  CWAFSA G +E     +   L  LS Q LVDC    G
Sbjct: 2   PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 357 --GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
             GCNGG MD A QY+ DNGG+ S+++YPY+A+E                   +  IP  
Sbjct: 62  NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKYNPKYSVANDAGFVDIP-K 117
Query: 415 EEEEMKKWVATRGPLSVGMNANG---LFYYSG--------------GVIDLNQRLYGTSI 457
           +E+ + K VAT GP+SV ++A     LFY  G              GV+ +      T  
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 177
Query: 458 ---PYWIVKNSWGSDWG 471
               YW+VKNSWG +WG
Sbjct: 178 DNNKYWLVKNSWGEEWG 194

>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With Az12878478 Length = 220

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 13/159 (8%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
           +L  L+ + LVDC    G  GCNGG MD A QY+ DNGG+ S+++YPY+A+E        
Sbjct: 44  RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKY 100
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
                      +  IP  +E+ + K VAT GP+SV ++A     LFY  G   + +   C
Sbjct: 101 NPKYSVANDAGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---C 156
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
           + +  +H +++VGYG E  +   +  YW+VKNSWG +WG
Sbjct: 157 SSEDMDHGVLVVGYGFESTESDNN-KYWLVKNSWGEEWG 194

>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study Of Cathepsin-L Retro-Binding Inhibitors(Compound 4) Length = 220

Iteration: 1
 Score =  122 bits (306), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/197 (38%), Positives = 101/197 (51%), Gaps = 26/197 (13%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P + DWR +G ++ VK QG+C  CWAFSA G +E     +   L  LS Q LVDC    G
Sbjct: 2   PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 357 --GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
             GCNGG MD A QY+ DNGG+ S+++YPY+A+E                   +  IP  
Sbjct: 62  NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKYNPKYSVANDTGFVDIP-K 117
Query: 415 EEEEMKKWVATRGPLSVGMNANG---LFYYSG--------------GVIDLNQRLYGTSI 457
           +E+ + K VAT GP+SV ++A     LFY  G              GV+ +      T  
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 177
Query: 458 ---PYWIVKNSWGSDWG 471
               YW+VKNSWG +WG
Sbjct: 178 DNNKYWLVKNSWGEEWG 194

>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study Of Cathepsin-L Retro-Binding Inhibitors(Compound 4) Length = 220

Iteration: 1
 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 13/159 (8%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
           +L  L+ + LVDC    G  GCNGG MD A QY+ DNGG+ S+++YPY+A+E        
Sbjct: 44  RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKY 100
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
                      +  IP  +E+ + K VAT GP+SV ++A     LFY  G   + +   C
Sbjct: 101 NPKYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---C 156
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
           + +  +H +++VGYG E  +   +  YW+VKNSWG +WG
Sbjct: 157 SSEDMDHGVLVVGYGFESTESDNN-KYWLVKNSWGEEWG 194

>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex With Its Propeptide Length = 224

Iteration: 1
 Score =  122 bits (306), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 102/195 (52%), Gaps = 22/195 (11%)
Query: 295 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS 354
           +LP   DWR+ G ++ VK+Q  C  CWAFS  G +E  H  +   L  LS Q+L+DC  +
Sbjct: 6   ELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRA 65
Query: 355 NG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
            G   C+GG M+DA QY++D+GG+ S+ AYPY A + E                 +  +P
Sbjct: 66  EGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEE---CRAQSCEKVVKILGFKDVP 122
Query: 413 YGEEEEMKKWVATRGPLSVGMNANGL---FYYSGGV-----IDLNQRL----YGT----S 456
              E  MK  +A + P+S+ + A+ +   FY+ G        DL+  +    YGT     
Sbjct: 123 RRSEAAMKAALA-KSPVSIAIEADQMPFQFYHEGVFDASCGTDLDHGVLLVGYGTDKESK 181
Query: 457 IPYWIVKNSWGSDWG 471
             +WI+KNSWG+ WG
Sbjct: 182 KDFWIMKNSWGTGWG 196

>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex With Its Propeptide Length = 224

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 19/160 (11%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
           KL  L+ ++L+DC  + G   C+GG M+DA QY++D+GG+ S+ AYPY A + E      
Sbjct: 50  KLVSLSEQELMDCSRAEGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEE---CRA 106
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLF--YYSGGVIDLNQRLCN 612
                      +  +P   E  MK  +A + P+S+ + A+ +   +Y  GV D +   C 
Sbjct: 107 QSCEKVVKILGFKDVPRRSEAAMKAALA-KSPVSIAIEADQMPFQFYHEGVFDAS---CG 162
Query: 613 PKAQNHALIIVGYG--EEEKKDGTSIPYWIVKNSWGSDWG 650
               +H +++VGYG  +E KKD     +WI+KNSWG+ WG
Sbjct: 163 TDL-DHGVLLVGYGTDKESKKD-----FWIMKNSWGTGWG 196

>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From Tenebrio Molitor Larval Midgut Length = 331

Iteration: 1
 Score =  122 bits (305), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 151/318 (47%), Gaps = 37/318 (11%)
Query: 200 HDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAV---FGVNKFFDLSESDLQQLT-G 255
           + + Y + ++   R + F   +E  E++  +     V    GVN F D++  +++  T G
Sbjct: 29  YARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDMTPEEMKAYTHG 88
Query: 256 LNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQG 315
           L + + L      ++      + D  + A    S+R+    P +FDWR +G++S VK QG
Sbjct: 89  LIMPADLHKNGIPIKT-----REDLGLNA----SVRY----PASFDWRDQGMVSPVKNQG 135
Query: 316 KCACCWAFSAVGVVEAMHAIQGNSLTELSV--QQLVDCDMSNGGCNGGRMDDALQYIIDN 373
            C   WAFS+ G +E+   I   +  + SV  QQLVDC  +  GC+GG M+DA  Y+  N
Sbjct: 136 SCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNALGCSGGWMNDAFTYVAQN 195
Query: 374 GGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGM 433
           GG+ S+ AYPY+ ++   G               Y  +   +E  +   VAT+GP++V  
Sbjct: 196 GGIDSEGAYPYEMAD---GNCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAVAF 252
Query: 434 NANGLF-YYSGGV-----IDLNQRLYGTSI---------PYWIVKNSWGSDWGEKVEDKV 478
           +A+  F  YSGGV      + N+  +   I          YW+VKNSWG  WG     K+
Sbjct: 253 DADDPFGSYSGGVYYNPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKI 312
Query: 479 GSSGNRTRDLELTGVLPS 496
             + N    +     +P+
Sbjct: 313 ARNANNHCGIAGVASVPT 330

>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From Tenebrio Molitor Larval Midgut Length = 331

Iteration: 1
 Score = 95.5 bits (236), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 82/153 (53%), Gaps = 11/153 (7%)
Query: 499 SRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXX 558
           S ++ ++LVDC  +  GC+GG M+DA  Y+  NGG+ S+ AYPY+ ++   G        
Sbjct: 163 SSVSEQQLVDCVPNALGCSGGWMNDAFTYVAQNGGIDSEGAYPYEMAD---GNCHYDPNQ 219
Query: 559 XXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLF-YYSGGVIDLNQRLCNPKAQN 617
                  Y  +   +E  +   VAT+GP++V  +A+  F  YSGGV       C      
Sbjct: 220 VAARLSGYVYLSGPDENMLADMVATKGPVAVAFDADDPFGSYSGGV--YYNPTCETNKFT 277
Query: 618 HALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
           HA++IVGYG E  +D     YW+VKNSWG  WG
Sbjct: 278 HAVLIVGYGNENGQD-----YWLVKNSWGDGWG 305

>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform Length = 312

Iteration: 1
 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 133/297 (44%), Gaps = 50/297 (16%)
Query: 200 HDKVYSSVEDLLRRH--ENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQ-LTGL 256
           H+++Y   E+  RR   E  +  +E       E   +    +N F D++  + +Q + GL
Sbjct: 15  HNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGL 74
Query: 257 NLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGK 316
                              N+   + + FQ        + P + DWR +G ++ VK QG+
Sbjct: 75  Q------------------NRKPRKGKVFQEPLFY---EAPRSVDWREKGYVTPVKNQGQ 113
Query: 317 CACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG--GCNGGRMDDALQYIIDNG 374
           C   WAFSA G +E     +   L  LS Q LVDC    G  GCNGG MD A QY+ DNG
Sbjct: 114 CGSSWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNG 173
Query: 375 GVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMN 434
           G+ S+++YPY+A+E                   +  IP  E+  MK  VAT GP+SV ++
Sbjct: 174 GLDSEESYPYEATEE---SCKYNPKYSVANDAGFVDIPKQEKALMKA-VATVGPISVAID 229
Query: 435 ANG---LFYYSG--------------GVIDLNQRLYGTSI---PYWIVKNSWGSDWG 471
           A     LFY  G              GV+ +      T      YW+VKNSWG +WG
Sbjct: 230 AGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWG 286

>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform Length = 312

Iteration: 1
 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 114/237 (48%), Gaps = 33/237 (13%)
Query: 423 VATRGPLSVGMNANGLFYYSGGVIDLNQRLYGTSIPYWIVKNSWGSDWGEKVEDKVGSSG 482
           +  R P    +    LFY +   +D  ++ Y T +               K + + GSS 
Sbjct: 74  LQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPV---------------KNQGQCGSSW 118
Query: 483 NRTRDLELTGVLPSKLSRLAT---EKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSD 537
             +    L G +  K  RL +   + LVDC    G  GCNGG MD A QY+ DNGG+ S+
Sbjct: 119 AFSATGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNGGLDSE 178
Query: 538 QAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG-- 595
           ++YPY+A+E                   +  IP  E+  MK  VAT GP+SV ++A    
Sbjct: 179 ESYPYEATEE---SCKYNPKYSVANDAGFVDIPKQEKALMKA-VATVGPISVAIDAGHES 234
Query: 596 -LFYYSGGVIDLNQRLCNPKAQNHALIIVGYG-EEEKKDGTSIPYWIVKNSWGSDWG 650
            LFY  G   + +   C+ +  +H +++VGYG E  + DG    YW+VKNSWG +WG
Sbjct: 235 FLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFESTESDGNK--YWLVKNSWGEEWG 286

>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A Ketoamide Warhead Length = 213

Iteration: 1
 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/192 (38%), Positives = 101/192 (52%), Gaps = 19/192 (9%)
Query: 298 EAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGG 357
           ++ D+R +G ++ VK QG+C  CWAFS+VG +E     +   L  LS Q LVDC   N G
Sbjct: 1   DSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDG 60
Query: 358 CNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEE 417
           C GG M +A QY+  N G+ S+ AYPY   E    C+             Y  IP G E+
Sbjct: 61  CGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES--CM-YNPTGKAAKCRGYREIPEGNEK 117
Query: 418 EMKKWVATRGPLSVGMNAN--GLFYYSGGVI--------DLNQRL----YGTSI--PYWI 461
            +K+ VA  GP+SV ++A+     +YS GV         +LN  +    YG      +WI
Sbjct: 118 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWI 177
Query: 462 VKNSWGSDWGEK 473
           +KNSWG +WG K
Sbjct: 178 IKNSWGENWGNK 189

>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A Ketoamide Warhead Length = 213

Iteration: 1
 Score = 99.4 bits (246), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 83/158 (52%), Gaps = 12/158 (7%)
Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXX 556
           KL  L+ + LVDC   N GC GG M +A QY+  N G+ S+ AYPY   E    C+    
Sbjct: 42  KLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES--CM-YNP 98
Query: 557 XXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPK 614
                    Y  IP G E+ +K+ VA  GP+SV ++A+     +YS GV       CN  
Sbjct: 99  TGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV--YYDESCNSD 156
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
             NHA++ VGYG ++        +WI+KNSWG +WG K
Sbjct: 157 NLNHAVLAVGYGIQKGNK-----HWIIKNSWGENWGNK 189

>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L Length = 316

Iteration: 1
 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 130/304 (42%), Gaps = 64/304 (21%)
Query: 200 HDKVYSSVEDLLRRH--ENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLTGLN 257
           H+++Y   E+  RR   E  +  +E       E   +    +N F D++  + +Q+    
Sbjct: 19  HNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQV---- 74
Query: 258 LDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGD--------DLPEAFDWRAEGVIS 309
                                   M  FQ    R G         + P + DWR +G ++
Sbjct: 75  ------------------------MNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVT 110
Query: 310 KVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCD--MSNGGCNGGRMDDAL 367
            VK QG+C   WAFSA G +E     +   L  LS Q LVDC     N GCNGG MD A 
Sbjct: 111 PVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAF 170
Query: 368 QYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRG 427
           QY+ DNGG+ S+++YPY+A+E                   +  IP  E+  MK  VAT G
Sbjct: 171 QYVQDNGGLDSEESYPYEATEE---SCKYNPKYSVANDAGFVDIPKQEKALMKA-VATVG 226
Query: 428 PLSVGMNANG---LFYYSG--------------GVIDLNQRLYGTSI---PYWIVKNSWG 467
           P+SV ++A     LFY  G              GV+ +      T      YW+VKNSWG
Sbjct: 227 PISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWG 286
Query: 468 SDWG 471
            +WG
Sbjct: 287 EEWG 290

>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L Length = 316

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 108/221 (48%), Gaps = 31/221 (14%)
Query: 438 LFYYSGGVIDLNQRLYGTSIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLPSK 497
           LFY +   +D  ++ Y T +               K + + GS    +    L G +  K
Sbjct: 93  LFYEAPRSVDWREKGYVTPV---------------KNQGQCGSXWAFSATGALEGQMFRK 137
Query: 498 LSRLAT---EKLVDCD--MSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCL 552
             RL +   + LVDC     N GCNGG MD A QY+ DNGG+ S+++YPY+A+E      
Sbjct: 138 TGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE---SC 194
Query: 553 XXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQR 609
                        +  IP  E+  MK  VAT GP+SV ++A     LFY  G   + +  
Sbjct: 195 KYNPKYSVANDAGFVDIPKQEKALMKA-VATVGPISVAIDAGHESFLFYKEGIYFEPD-- 251
Query: 610 LCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
            C+ +  +H +++VGYG E  +   +  YW+VKNSWG +WG
Sbjct: 252 -CSSEDMDHGVLVVGYGFESTESDNN-KYWLVKNSWGEEWG 290

>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An Irreversible Vinyl Sulfone Inhibitor Length = 221

Iteration: 1
 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 107/223 (47%), Gaps = 25/223 (11%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           LP++ DWR +G ++ VK Q +C  CWAFSA G +E     +   L  LS Q LVDC    
Sbjct: 1   LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 356 G--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPY 413
           G  GCNGG M  A QY+ +NGG+ S+++YPY A +                   ++ +  
Sbjct: 61  GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDE---ICKYRPENSVAQDTGFTVVAP 117
Query: 414 GEEEEMKKWVATRGPLSVGMNANG---LFYYSG--------------GVIDLNQRLYGT- 455
           G+E+ + K VAT GP+SV M+A      FY SG              GV+ +     G  
Sbjct: 118 GKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGAN 177
Query: 456 --SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLPS 496
             +  YW+VKNSWG +WG     K+    N    +      P+
Sbjct: 178 SDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPN 220

>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An Irreversible Vinyl Sulfone Inhibitor Length = 221

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 86/159 (54%), Gaps = 12/159 (7%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
           KL  L+ + LVDC    G  GCNGG M  A QY+ +NGG+ S+++YPY A +        
Sbjct: 44  KLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDE---ICKY 100
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
                      ++ +  G+E+ + K VAT GP+SV M+A      FY SG   + +   C
Sbjct: 101 RPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPD---C 157
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
           + K  +H +++VGYG E      S  YW+VKNSWG +WG
Sbjct: 158 SSKNLDHGVLVVGYGFEGANSDNS-KYWLVKNSWGPEWG 195

>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution Length = 218

Iteration: 1
 Score =  120 bits (301), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 74/191 (38%), Positives = 102/191 (53%), Gaps = 18/191 (9%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P++ DWRA+G ++ VK QG C   WAFS +  VE ++ I   +L ELS Q+LVDCD  + 
Sbjct: 2   PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61
Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEE 416
           GC GG    +LQY+ +N GV + + YPY+A + +  C              Y R+P   E
Sbjct: 62  GCKGGYQTTSLQYVANN-GVHTSKVYPYQAKQYK--CRATDKPGPKVKITGYKRVPSNXE 118
Query: 417 EEMKKWVATRGPLSVGMNANGLFY--YSGGVID------LNQRL----YGTS--IPYWIV 462
                 +A + PLSV + A G  +  Y  GV D      L+  +    YGTS    Y I+
Sbjct: 119 TSFLGALANQ-PLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTSDGKNYIII 177
Query: 463 KNSWGSDWGEK 473
           KNSWG +WGEK
Sbjct: 178 KNSWGPNWGEK 188

>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution Length = 218

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/162 (35%), Positives = 82/162 (50%), Gaps = 15/162 (9%)
Query: 493 VLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCL 552
           ++   L  L+ ++LVDCD  + GC GG    +LQY+ +N GV + + YPY+A + +  C 
Sbjct: 40  IVTGNLLELSEQELVDCDKHSYGCKGGYQTTSLQYVANN-GVHTSKVYPYQAKQYK--CR 96
Query: 553 XXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRL 610
                        Y R+P   E      +A + PLSV + A G  +  Y  GV D     
Sbjct: 97  ATDKPGPKVKITGYKRVPSNXETSFLGALANQ-PLSVLVEAGGKPFQLYKSGVFD---GP 152
Query: 611 CNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           C  K  +HA+  VGYG  + K+     Y I+KNSWG +WGEK
Sbjct: 153 CGTKL-DHAVTAVGYGTSDGKN-----YIIIKNSWGPNWGEK 188

>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor, Chagasin, In Complex With Human Cathepsin L Length = 221

Iteration: 1
 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/199 (37%), Positives = 101/199 (50%), Gaps = 26/199 (13%)
Query: 295 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS 354
           + P + DWR +G ++ VK QG+C   WAFSA G +E     +   L  LS Q LVDC   
Sbjct: 1   EAPRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 355 NG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIP 412
            G  GCNGG MD A QY+ DNGG+ S+++YPY+A+E                   +  IP
Sbjct: 61  QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKYNPKYSVANDTGFVDIP 117
Query: 413 YGEEEEMKKWVATRGPLSVGMNANG---LFYYSG--------------GVIDLNQRLYGT 455
             +E+ + K VAT GP+SV ++A     LFY  G              GV+ +      T
Sbjct: 118 -KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFEST 176
Query: 456 SI---PYWIVKNSWGSDWG 471
                 YW+VKNSWG +WG
Sbjct: 177 ESDNNKYWLVKNSWGEEWG 195

>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor, Chagasin, In Complex With Human Cathepsin L Length = 221

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 13/159 (8%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
           +L  L+ + LVDC    G  GCNGG MD A QY+ DNGG+ S+++YPY+A+E        
Sbjct: 45  RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKY 101
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
                      +  IP  +E+ + K VAT GP+SV ++A     LFY  G   + +   C
Sbjct: 102 NPKYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---C 157
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
           + +  +H +++VGYG E  +   +  YW+VKNSWG +WG
Sbjct: 158 SSEDMDHGVLVVGYGFESTESDNN-KYWLVKNSWGEEWG 195

>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant Length = 220

Iteration: 1
 Score =  119 bits (298), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/197 (38%), Positives = 100/197 (50%), Gaps = 26/197 (13%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P + DWR +G ++ VK QG+C   WAFSA G +E     +   L  LS Q LVDC    G
Sbjct: 2   PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 357 --GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
             GCNGG MD A QY+ DNGG+ S+++YPY+A+E                   +  IP  
Sbjct: 62  NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKYNPKYSVANDTGFVDIP-K 117
Query: 415 EEEEMKKWVATRGPLSVGMNANG---LFYYSG--------------GVIDLNQRLYGTSI 457
           +E+ + K VAT GP+SV ++A     LFY  G              GV+ +      T  
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 177
Query: 458 ---PYWIVKNSWGSDWG 471
               YW+VKNSWG +WG
Sbjct: 178 DNNKYWLVKNSWGEEWG 194

>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant Length = 220

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 13/159 (8%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
           +L  L+ + LVDC    G  GCNGG MD A QY+ DNGG+ S+++YPY+A+E        
Sbjct: 44  RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKY 100
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
                      +  IP  +E+ + K VAT GP+SV ++A     LFY  G   + +   C
Sbjct: 101 NPKYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---C 156
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
           + +  +H +++VGYG E  +   +  YW+VKNSWG +WG
Sbjct: 157 SSEDMDHGVLVVGYGFESTESDNN-KYWLVKNSWGEEWG 194

>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor Bound To Cathepsin K Length = 215

Iteration: 1
 Score =  119 bits (297), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 98/191 (51%), Gaps = 19/191 (9%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P++ D+R +G ++ VK QG+C  CWAFS+VG +E        +L  L+ Q LVDC   N 
Sbjct: 2   PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSEND 61
Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEE 416
           GC GG M +A QY+  N G+ S+ AYPY   +    C+             Y  IP G E
Sbjct: 62  GCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDES--CM-YNPTGKAAKCRGYREIPEGNE 118
Query: 417 EEMKKWVATRGPLSVGMNAN--GLFYYSGGVI--------DLNQRL----YGTSI--PYW 460
             +K+ VA  GP+SV ++A+     +YS GV          LN  +    YG      +W
Sbjct: 119 AALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGIQAGNKHW 178
Query: 461 IVKNSWGSDWG 471
           I+KNSWG  WG
Sbjct: 179 IIKNSWGESWG 189

>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor Bound To Cathepsin K Length = 215

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 81/156 (51%), Gaps = 14/156 (8%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXX 557
           L  LA + LVDC   N GC GG M +A QY+  N G+ S+ AYPY   +    C+     
Sbjct: 45  LLNLAPQNLVDCVSENDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDES--CM-YNPT 101
Query: 558 XXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--GLFYYSGGV-IDLNQRLCNPK 614
                   Y  IP G E  +K+ VA  GP+SV ++A+     +YS GV  D N   C+  
Sbjct: 102 GKAAKCRGYREIPEGNEAALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDEN---CSSD 158
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
           A NHA++ VGYG +         +WI+KNSWG  WG
Sbjct: 159 ALNHAVLAVGYGIQAGNK-----HWIIKNSWGESWG 189

>pdb|1PCI|A Chain A, Procaricain Length = 322

Iteration: 1
 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 137/290 (47%), Gaps = 38/290 (13%)
Query: 199 HHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDL-QQLTGLN 257
           +H+K Y +V++ L R E F  N+   ++   +++ +   G+N+F DLS  +  ++  G  
Sbjct: 28  NHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNN-SYWLGLNEFADLSNDEFNEKYVGSL 86
Query: 258 LDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKC 317
           +D+T+E    S    F +                   +LPE  DWR +G ++ V+ QG C
Sbjct: 87  IDATIEQ---SYDEEFINEDIV---------------NLPENVDWRKKGAVTPVRHQGSC 128
Query: 318 ACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVV 377
             CWAFSAV  VE ++ I+   L ELS Q+LVDC+  + GC GG    AL+Y+  N G+ 
Sbjct: 129 GSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKN-GIH 187
Query: 378 SDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG 437
               YPYKA +    C                R+    E  +   +A + P+SV + + G
Sbjct: 188 LRSKYPYKAKQGT--CRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQ-PVSVVVESKG 244
Query: 438 LFY--YSGGVID--LNQRLYGTSIPYW----------IVKNSWGSDWGEK 473
             +  Y GG+ +     ++ G                ++KNSWG+ WGEK
Sbjct: 245 RPFQLYKGGIFEGPCGTKVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEK 294

>pdb|1PCI|A Chain A, Procaricain Length = 322

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 15/165 (9%)
Query: 490 LTGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESER 549
           +  +   KL  L+ ++LVDC+  + GC GG    AL+Y+  N G+     YPYKA +   
Sbjct: 143 INKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGT- 200
Query: 550 GCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLN 607
            C                R+    E  +   +A + P+SV + + G  +  Y GG+    
Sbjct: 201 -CRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQ-PVSVVVESKGRPFQLYKGGIF--- 255
Query: 608 QRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           +  C  K       +               Y ++KNSWG+ WGEK
Sbjct: 256 EGPCGTKVDGAVTAV------GYGKSGGKGYILIKNSWGTAWGEK 294

>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin L Length = 220

Iteration: 1
 Score =  118 bits (296), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 75/197 (38%), Positives = 100/197 (50%), Gaps = 26/197 (13%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P + DWR +G ++ VK QG+C   WAFSA G +E     +   L  LS Q LVDC    G
Sbjct: 2   PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 357 --GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
             GCNGG MD A QY+ DNGG+ S+++YPY+A+E                   +  IP  
Sbjct: 62  NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKYNPKYSVANDTGFVDIP-K 117
Query: 415 EEEEMKKWVATRGPLSVGMNANG---LFYYSG--------------GVIDLNQRLYGTSI 457
           +E+ + K VAT GP+SV ++A     LFY  G              GV+ +      T  
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 177
Query: 458 ---PYWIVKNSWGSDWG 471
               YW+VKNSWG +WG
Sbjct: 178 DNNKYWLVKNSWGEEWG 194

>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin L Length = 220

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 13/159 (8%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
           +L  L+ + LVDC    G  GCNGG MD A QY+ DNGG+ S+++YPY+A+E        
Sbjct: 44  RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKY 100
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
                      +  IP  +E+ + K VAT GP+SV ++A     LFY  G   + +   C
Sbjct: 101 NPKYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---C 156
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
           + +  +H +++VGYG E  +   +  YW+VKNSWG +WG
Sbjct: 157 SSEDMDHGVLVVGYGFESTESDNN-KYWLVKNSWGEEWG 194

>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A Length = 220

Iteration: 1
 Score =  118 bits (296), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 75/197 (38%), Positives = 100/197 (50%), Gaps = 26/197 (13%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P + DWR +G ++ VK QG+C   WAFSA G +E     +   L  LS Q LVDC    G
Sbjct: 2   PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 357 --GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
             GCNGG MD A QY+ DNGG+ S+++YPY+A+E                   +  IP  
Sbjct: 62  NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKYNPKYSVANDAGFVDIP-K 117
Query: 415 EEEEMKKWVATRGPLSVGMNANG---LFYYSG--------------GVIDLNQRLYGTSI 457
           +E+ + K VAT GP+SV ++A     LFY  G              GV+ +      T  
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 177
Query: 458 ---PYWIVKNSWGSDWG 471
               YW+VKNSWG +WG
Sbjct: 178 DDNKYWLVKNSWGEEWG 194

>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A Length = 220

Iteration: 1
 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 13/159 (8%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
           +L  L+ + LVDC    G  GCNGG MD A QY+ DNGG+ S+++YPY+A+E        
Sbjct: 44  RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKY 100
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
                      +  IP  +E+ + K VAT GP+SV ++A     LFY  G   + +   C
Sbjct: 101 NPKYSVANDAGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---C 156
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
           + +  +H +++VGYG E  +   +  YW+VKNSWG +WG
Sbjct: 157 SSEDMDHGVLVVGYGFESTESDDN-KYWLVKNSWGEEWG 194

>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin At 1.7 Angstroms Resolution By Fast Fourier Least-Squares Methods Length = 220

Iteration: 1
 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 109/207 (52%), Gaps = 23/207 (11%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           LP   DWR+ G +  +K QG+C   WAFSA+  VE ++ I   SL  LS Q+L+DC  + 
Sbjct: 1   LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 356 G--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPY 413
              GC+GG + D  Q+II++GG+ +++ YPY A + +  C              Y  +PY
Sbjct: 61  NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGD--CDVALQDQKYVTIDTYENVPY 118
Query: 414 GEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVID------LNQRL----YGT--SIPY 459
             E  ++  V T  P+SV ++A G  +  Y+ G+        ++  +    YGT   + Y
Sbjct: 119 NNEWALQTAV-TYQPVSVALDAAGDAFKQYASGIFTGPCGTAVDHAIVIVGYGTEGGVDY 177
Query: 460 WIVKNSWGSDWGE----KVEDKVGSSG 482
           WIVKNSW + WGE    ++   VG +G
Sbjct: 178 WIVKNSWDTTWGEEGYMRILRNVGGAG 204

>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin At 1.7 Angstroms Resolution By Fast Fourier Least-Squares Methods Length = 220

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 16/164 (9%)
Query: 493 VLPSKLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERG 550
           +    L  L+ ++L+DC  +    GC+GG + D  Q+II++GG+ +++ YPY A + +  
Sbjct: 40  ITSGSLISLSEQELIDCGRTQNTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGD-- 97
Query: 551 CLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQ 608
           C              Y  +PY  E  ++  V T  P+SV ++A G  +  Y+ G+     
Sbjct: 98  CDVALQDQKYVTIDTYENVPYNNEWALQTAV-TYQPVSVALDAAGDAFKQYASGIF---T 153
Query: 609 RLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
             C   A +HA++IVGYG E   D     YWIVKNSW + WGE+
Sbjct: 154 GPCG-TAVDHAIVIVGYGTEGGVD-----YWIVKNSWDTTWGEE 191

>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera Length = 217

Iteration: 1
 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/201 (37%), Positives = 100/201 (49%), Gaps = 37/201 (18%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P + DWR +G ++ VK QG+C   +AFSA G +E     +   L  LS Q LVDC    G
Sbjct: 2   PRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 357 --GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
             GCNGG MD A QY+ DNGG+ S+++YPY+A+E                   +  IP  
Sbjct: 62  NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKYNPKYSVANDVGFVDIP-K 117
Query: 415 EEEEMKKWVATRGPLSVGMNANG---LFYYSG---------------------GVIDLNQ 450
           +E+ + K VAT GP+SV ++A     LFY  G                     G I  NQ
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFISNNQ 177
Query: 451 RLYGTSIPYWIVKNSWGSDWG 471
           +       YW+VKNSWG +WG
Sbjct: 178 K-------YWLVKNSWGEEWG 191

>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera Length = 217

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 84/159 (52%), Gaps = 16/159 (10%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
           +L  L+ + LVDC    G  GCNGG MD A QY+ DNGG+ S+++YPY+A+E        
Sbjct: 44  RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKY 100
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
                      +  IP  +E+ + K VAT GP+SV ++A     LFY  G     +    
Sbjct: 101 NPKYSVANDVGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSS- 158
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
              + NHA+++VGYG           YW+VKNSWG +WG
Sbjct: 159 --SSLNHAMLVVGYGFISNNQ----KYWLVKNSWGEEWG 191

>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana Length = 214

Iteration: 1
 Score =  117 bits (292), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/200 (32%), Positives = 103/200 (51%), Gaps = 14/200 (7%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           PE+ DWR +G ++ VK Q  C  CWAFS V  +E ++ I    L  LS Q+L+DC+  + 
Sbjct: 2   PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSH 61
Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEE 416
           GC+GG    +LQY++DN GV +++ YPY+  +    C              Y  +P  +E
Sbjct: 62  GCDGGYQTTSLQYVVDN-GVHTEREYPYEKKQGR--CRAKDKKGPKVYITGYKYVPANDE 118
Query: 417 EEMKKWVATRGPLSVGMNA--NGLFYYSGGV--------IDLNQRLYGTSIPYWIVKNSW 466
             + + +A + P+SV  ++   G  +Y GG+         D      G    Y ++KNSW
Sbjct: 119 ISLIQAIANQ-PVSVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVTAVGYGKTYLLLKNSW 177
Query: 467 GSDWGEKVEDKVGSSGNRTR 486
           G +WGEK   ++  +  R++
Sbjct: 178 GPNWGEKGYIRIKRASGRSK 197

>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana Length = 214

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 23/164 (14%)
Query: 493 VLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCL 552
           ++  +L  L+ ++L+DC+  + GC+GG    +LQY++DN GV +++ YPY+  +    C 
Sbjct: 40  IITGQLISLSEQELLDCERRSHGCDGGYQTTSLQYVVDN-GVHTEREYPYEKKQGR--CR 96
Query: 553 XXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNA--NGLFYYSGGVIDLNQRL 610
                        Y  +P  +E  + + +A + P+SV  ++   G  +Y GG+ +     
Sbjct: 97  AKDKKGPKVYITGYKYVPANDEISLIQAIANQ-PVSVVTDSRGRGFQFYKGGIYE----- 150
Query: 611 CNPKAQN--HALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
             P   N  HA+  VGYG+          Y ++KNSWG +WGEK
Sbjct: 151 -GPCGTNTDHAVTAVGYGKT---------YLLLKNSWGPNWGEK 184

>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex Length = 221

Iteration: 1
 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 106/223 (47%), Gaps = 25/223 (11%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           LP++ DWR +G ++ VK Q +C   WAFSA G +E     +   L  LS Q LVDC    
Sbjct: 1   LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 356 G--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPY 413
           G  GCNGG M  A QY+ +NGG+ S+++YPY A +                   ++ +  
Sbjct: 61  GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDE---ICKYRPENSVAQDTGFTVVAP 117
Query: 414 GEEEEMKKWVATRGPLSVGMNANG---LFYYSG--------------GVIDLNQRLYGT- 455
           G+E+ + K VAT GP+SV M+A      FY SG              GV+ +     G  
Sbjct: 118 GKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGAN 177
Query: 456 --SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLPS 496
             +  YW+VKNSWG +WG     K+    N    +      P+
Sbjct: 178 SDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPN 220

>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex Length = 221

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 86/159 (54%), Gaps = 12/159 (7%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
           KL  L+ + LVDC    G  GCNGG M  A QY+ +NGG+ S+++YPY A +        
Sbjct: 44  KLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDE---ICKY 100
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
                      ++ +  G+E+ + K VAT GP+SV M+A      FY SG   + +   C
Sbjct: 101 RPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPD---C 157
Query: 612 NPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
           + K  +H +++VGYG E      S  YW+VKNSWG +WG
Sbjct: 158 SSKNLDHGVLVVGYGFEGANSDNS-KYWLVKNSWGPEWG 195

>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The Catalytic Cysteine From Seeds Of Pachyrhizus Erosus Length = 246

Iteration: 1
 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 104/198 (52%), Gaps = 24/198 (12%)
Query: 295 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS 354
           D PE++DW  +GVI+KVK QG+C   WAFSA G +EA HAI   +L  LS Q+L+DC   
Sbjct: 1   DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDE 60
Query: 355 NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRI--- 411
           + GC  G    + ++++ +GG+ S+  YPYKA + +  C                +I   
Sbjct: 61  SEGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGK--CKANEIQDKVTIDNYGVQILSN 118
Query: 412 ---PYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVID---------LNQRL----YGT 455
                  E  ++ +V  + P+SV ++A    +YSGG+ D         +N  +    YG+
Sbjct: 119 ESTESEAESSLQSFVLEQ-PISVSIDAKDFHFYSGGIYDGGNCSSPYGINHFVLIVGYGS 177
Query: 456 --SIPYWIVKNSWGSDWG 471
              + YWI KNSWG DWG
Sbjct: 178 EDGVDYWIAKNSWGEDWG 195

>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The Catalytic Cysteine From Seeds Of Pachyrhizus Erosus Length = 246

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 15/164 (9%)
Query: 493 VLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCL 552
           +    L  L+ ++L+DC   + GC  G    + ++++ +GG+ S+  YPYKA + +  C 
Sbjct: 41  IATGNLVSLSEQELIDCVDESEGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGK--CK 98
Query: 553 XXXXXXXXXXXXXYSRI------PYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDL 606
                          +I          E  ++ +V  + P+SV ++A    +YSGG+ D 
Sbjct: 99  ANEIQDKVTIDNYGVQILSNESTESEAESSLQSFVLEQ-PISVSIDAKDFHFYSGGIYD- 156
Query: 607 NQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
                +P   NH ++IVGYG E+  D     YWI KNSWG DWG
Sbjct: 157 GGNCSSPYGINHFVLIVGYGSEDGVD-----YWIAKNSWGEDWG 195

>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of Papain At 2.6 Angstroem Resolution Length = 363

Iteration: 1
 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 137/293 (46%), Gaps = 35/293 (11%)
Query: 192 LTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQ 251
           L E  +  H+K+Y ++++ + R E F  N+ K  D  ++ + +   G+N F D+S  + +
Sbjct: 65  LFESWMLKHNKIYKNIDEKIYRFEIFKDNL-KYIDETNKKNNSYWLGLNVFADMSNDEFK 123
Query: 252 QLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGD-DLPEAFDWRAEGVISK 310
           +                     + N T TE+   +   L  GD ++PE  DWR +G ++ 
Sbjct: 124 E---------------KYTGSIAGNYTTTELSYEEV--LNDGDVNIPEYVDWRQKGAVTP 166
Query: 311 VKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYI 370
           VK QG C   WAFSAV  +E++  I+  +L E S Q+L+DCD  + GCNGG    ALQ +
Sbjct: 167 VKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQ-L 225
Query: 371 IDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRI-PYGEEEEMKKWVATRGPL 429
           +   G+     YPY+    +R C                ++ PY E   +  +     P+
Sbjct: 226 VAQYGIHYRNTYPYEG--VQRYCRSREKGPYAAKTDGVRQVQPYNEGALL--YSIANQPV 281
Query: 430 SVGMNANGLFY--YSGGV--------IDLNQRLYGTSIPYWIVKNSWGSDWGE 472
           SV + A G  +  Y GG+        +D      G    Y +++NSWG+ WGE
Sbjct: 282 SVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPNYILIRNSWGTGWGE 334

>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of Papain At 2.6 Angstroem Resolution Length = 363

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 21/157 (13%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXX 557
           L+  + ++L+DCD  + GCNGG    ALQ ++   G+     YPY+    +R C      
Sbjct: 196 LNEYSEQELLDCDRRSYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKG 252
Query: 558 XXXXXXXXYSRI-PYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLCNPK 614
                     ++ PY E   +  +     P+SV + A G  +  Y GG+       C  K
Sbjct: 253 PYAAKTDGVRQVQPYNEGALL--YSIANQPVSVVLEAAGKDFQLYRGGIF---VGPCGNK 307
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
             +HA+  VGYG           Y +++NSWG+ WGE
Sbjct: 308 V-DHAVAAVGYGPN---------YILIRNSWGTGWGE 334

>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor, Leupeptin Length = 243

Iteration: 1
 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/197 (36%), Positives = 101/197 (51%), Gaps = 28/197 (14%)
Query: 299 AFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGC 358
           A+DWR  G ++ VK+Q  C  CWAFS+VG VE+ +AI+  +L   S Q+LVDC + N GC
Sbjct: 23  AYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKNNGC 82
Query: 359 NGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEE 418
            GG + +A   +ID GG+ S   YPY ++  E   L             Y  IP   +++
Sbjct: 83  YGGYITNAFDDMIDLGGLCSQDDYPYVSNLPETCNLKRCNERYTIKS--YVSIP---DDK 137
Query: 419 MKKWVATRGPLSVGMNANGLF-YYSGGVID------LNQRL----YGTS----------- 456
            K+ +   GP+S+ + A+  F +Y GG  D       N  +    YG             
Sbjct: 138 FKEALRYLGPISISIAASDDFAFYRGGFYDGECGAAPNHAVILVGYGMKDIYNEDTGRME 197
Query: 457 -IPYWIVKNSWGSDWGE 472
              Y+I+KNSWGSDWGE
Sbjct: 198 KFYYYIIKNSWGSDWGE 214

>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor, Leupeptin Length = 243

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 82/160 (51%), Gaps = 15/160 (9%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXX 557
           L   + ++LVDC + N GC GG + +A   +ID GG+ S   YPY ++  E   L     
Sbjct: 64  LFLFSEQELVDCSVKNNGCYGGYITNAFDDMIDLGGLCSQDDYPYVSNLPETCNL--KRC 121
Query: 558 XXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLF-YYSGGVIDLNQRLCNPKAQ 616
                   Y  IP   +++ K+ +   GP+S+ + A+  F +Y GG  D     C   A 
Sbjct: 122 NERYTIKSYVSIP---DDKFKEALRYLGPISISIAASDDFAFYRGGFYDGE---CGA-AP 174
Query: 617 NHALIIVGYG-----EEEKKDGTSIPYWIVKNSWGSDWGE 651
           NHA+I+VGYG      E+        Y+I+KNSWGSDWGE
Sbjct: 175 NHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGE 214

>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2 Length = 241

Iteration: 1
 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 101/198 (51%), Gaps = 28/198 (14%)
Query: 299 AFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGC 358
           A+DWR    ++ VK+Q  C  CWAFS++G VE+ +AI+ N L  LS Q+LVDC   N GC
Sbjct: 21  AYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGC 80
Query: 359 NGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEE 418
           NGG +++A + +I+ GG+  D  YPY  S++   C              Y  +P   + +
Sbjct: 81  NGGLINNAFEDMIELGGICPDGDYPY-VSDAPNLC-NIDRCTEKYGIKNYLSVP---DNK 135
Query: 419 MKKWVATRGPLSVGMNANGLF-YYSGGVID------LNQRLY----------------GT 455
           +K+ +   GP+S+ +  +  F +Y  G+ D      LN  +                 G 
Sbjct: 136 LKEALRFLGPISISVAVSDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGE 195
Query: 456 SIPYWIVKNSWGSDWGEK 473
              Y+I+KNSWG  WGE+
Sbjct: 196 KHYYYIIKNSWGQQWGER 213

>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2 Length = 241

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 15/166 (9%)
Query: 493 VLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCL 552
           +  +KL  L+ ++LVDC   N GCNGG +++A + +I+ GG+  D  YPY  S++   C 
Sbjct: 57  IRKNKLITLSEQELVDCSFKNYGCNGGLINNAFEDMIELGGICPDGDYPY-VSDAPNLC- 114
Query: 553 XXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLF-YYSGGVIDLNQRLC 611
                        Y  +P   + ++K+ +   GP+S+ +  +  F +Y  G+ D     C
Sbjct: 115 NIDRCTEKYGIKNYLSVP---DNKLKEALRFLGPISISVAVSDDFAFYKEGIFDGE---C 168
Query: 612 NPKAQNHALIIVGYGEEE-----KKDGTSIPYWIVKNSWGSDWGEK 652
             +  NHA+++VG+G +E      K G    Y+I+KNSWG  WGE+
Sbjct: 169 GDQL-NHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGER 213

>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii Fragment In Complex With Cathepsin L Length = 175

Iteration: 1
 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 84/152 (55%), Gaps = 9/152 (5%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P + DWR +G ++ VK QG+C  CWAFSA G +E     +   L  LS Q LVDC    G
Sbjct: 2   PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 357 --GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
             GCNGG MD A QY+ DNGG+ S+++YPY+A+E                   +  IP  
Sbjct: 62  NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKYNPKYSVANDTGFVDIP-K 117
Query: 415 EEEEMKKWVATRGPLSVGMNANG---LFYYSG 443
           +E+ + K VAT GP+SV ++A     LFY  G
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEG 149

>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii Fragment In Complex With Cathepsin L Length = 175

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 75/137 (54%), Gaps = 12/137 (8%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
           +L  L+ + LVDC    G  GCNGG MD A QY+ DNGG+ S+++YPY+A+E        
Sbjct: 44  RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKY 100
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
                      +  IP  +E+ + K VAT GP+SV ++A     LFY  G   + +   C
Sbjct: 101 NPKYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---C 156
Query: 612 NPKAQNHALIIVGYGEE 628
           + +  +H +++VGYG E
Sbjct: 157 SSEDMDHGVLVVGYGFE 173

>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola Hepatica Length = 310

Iteration: 1
 Score =  109 bits (272), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 135/295 (45%), Gaps = 45/295 (15%)
Query: 200 HDKVYSSVEDLLRRH--ENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLS--ESDLQQLTG 255
           ++K Y+  +D  RR+  E  V ++++          T   G+N+F D++  E   + LT 
Sbjct: 12  YNKEYNGADDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKAKYLTE 71
Query: 256 LNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQG 315
           ++  S +     S   P+ +N      RA           +P+  DWR  G +++VK+QG
Sbjct: 72  MSRASDI----LSHGVPYEANN-----RA-----------VPDKIDWRESGYVTEVKDQG 111
Query: 316 KCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM--SNGGCNGGRMDDALQYIIDN 373
            C   WAFS  G +E  +     +    S QQLVDC     N GC GG M++A QY +  
Sbjct: 112 NCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQY-LKQ 170
Query: 374 GGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGM 433
            G+ ++ +YPY A E +  C              Y+ +  G E E+K  V   GP +V +
Sbjct: 171 FGLETESSYPYTAVEGQ--CRYNKQLGVAKVTGFYT-VHSGSEVELKNLVGAEGPAAVAV 227
Query: 434 NANGLF-YYSGGV--------IDLNQRL----YGTS--IPYWIVKNSWGSDWGEK 473
           +    F  Y  G+        + +N  +    YGT     YWIVKNSWG  WGE+
Sbjct: 228 DVESDFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGER 282

>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola Hepatica Length = 310

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 78/155 (50%), Gaps = 14/155 (9%)
Query: 501 LATEKLVDCDM--SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXX 558
            + ++LVDC     N GC GG M++A QY+    G+ ++ +YPY A E +  C       
Sbjct: 139 FSEQQLVDCSRPWGNNGCGGGLMENAYQYL-KQFGLETESSYPYTAVEGQ--CRYNKQLG 195
Query: 559 XXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY-YSGGVIDLNQRLCNPKAQN 617
                  Y+ +  G E E+K  V   GP +V ++    F  Y  G+     + C+P   N
Sbjct: 196 VAKVTGFYT-VHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGIYQ--SQTCSPLRVN 252
Query: 618 HALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           HA++ VGYG +   D     YWIVKNSWG  WGE+
Sbjct: 253 HAVLAVGYGTQGGTD-----YWIVKNSWGLSWGER 282

>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of Crocus Sativus At 1.3 A Resolution Length = 222

Iteration: 1
 Score =  108 bits (270), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 89/195 (45%), Gaps = 26/195 (13%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P + DWR +G ++ VK+QG C  CWAF A G +E + AI    L  +S QQ+VDCD    
Sbjct: 2   PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEE 416
              GG  DDA +++I NGG+ SD  YPY   +                   Y+ +P    
Sbjct: 62  XXXGGDADDAFRWVITNGGIASDANYPYTGVDGT----CDLNKPIAARIDGYTNVPNSSS 117
Query: 417 EEMKKWVATRGPLSVGM----------NANGLFYYSG----------GVIDLNQRLYGTS 456
             +      + P+SV +             G+F  S            V+ +     GT+
Sbjct: 118 ALLD--AVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTN 175
Query: 457 IPYWIVKNSWGSDWG 471
             YWIVKNSWG++WG
Sbjct: 176 ADYWIVKNSWGTEWG 190

>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of Crocus Sativus At 1.3 A Resolution Length = 222

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 13/164 (7%)
Query: 490 LTGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESER 549
           +  +   +L  ++ +++VDCD       GG  DDA +++I NGG+ SD  YPY   +   
Sbjct: 37  IDAITTGRLISVSEQQIVDCDTXXXXXXGGDADDAFRWVITNGGIASDANYPYTGVDGT- 95
Query: 550 GCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY--YSG-GVIDL 606
                           Y+ +P      +      + P+SV +  +   +  Y+G G+   
Sbjct: 96  ---CDLNKPIAARIDGYTNVPNSSSALLD--AVAKQPVSVNIYTSSTSFQLYTGPGIFAG 150
Query: 607 NQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
           +    +P   +H ++IVGYG     +GT+  YWIVKNSWG++WG
Sbjct: 151 SSCSDDPATVDHTVLIVGYGS----NGTNADYWIVKNSWGTEWG 190

>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex With E-64 Length = 216

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 66/195 (33%), Positives = 95/195 (48%), Gaps = 24/195 (12%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           LPE  DWR +G ++ V+ QG C  CWAFSAV  VE ++ I+   L ELS Q+LVDC+  +
Sbjct: 1   LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGE 415
            GC GG    AL+Y+  N G+     YPYKA +    C                R+    
Sbjct: 61  HGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGT--CRAKQVGGPIVKTSGVGRVQPNN 117
Query: 416 EEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLYGTSIPYWI------------ 461
           E  +   +A + P+SV + + G  +  Y GG+    +   GT + + +            
Sbjct: 118 EGNLLNAIA-KQPVSVVVESKGRPFQLYKGGIF---EGPCGTKVEHAVTAVGYGKSGGKG 173
Query: 462 ---VKNSWGSDWGEK 473
              +KNSWG+ WGEK
Sbjct: 174 YILIKNSWGTAWGEK 188

>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex With E-64 Length = 216

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 15/158 (9%)
Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXX 556
           KL  L+ ++LVDC+  + GC GG    AL+Y+  N G+     YPYKA +    C     
Sbjct: 44  KLVELSEQELVDCERRSHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGT--CRAKQV 100
Query: 557 XXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLCNPK 614
                      R+    E  +   +A + P+SV + + G  +  Y GG+    +  C  K
Sbjct: 101 GGPIVKTSGVGRVQPNNEGNLLNAIA-KQPVSVVVESKGRPFQLYKGGIF---EGPCGTK 156
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
            + HA+  VGYG+   K        ++KNSWG+ WGEK
Sbjct: 157 VE-HAVTAVGYGKSGGKGYI-----LIKNSWGTAWGEK 188

>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega Length = 216

Iteration: 1
 Score =  107 bits (268), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 66/195 (33%), Positives = 95/195 (48%), Gaps = 24/195 (12%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           LPE  DWR +G ++ V+ QG C  CWAFSAV  VE ++ I+   L ELS Q+LVDC+  +
Sbjct: 1   LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGE 415
            GC GG    AL+Y+  N G+     YPYKA +    C                R+    
Sbjct: 61  HGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGT--CRAKQVGGPIVKTSGVGRVQPNN 117
Query: 416 EEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLYGTSIPYWI------------ 461
           E  +   +A + P+SV + + G  +  Y GG+    +   GT + + +            
Sbjct: 118 EGNLLNAIA-KQPVSVVVESKGRPFQLYKGGIF---EGPCGTKVDHAVTAVGYGKSGGKG 173
Query: 462 ---VKNSWGSDWGEK 473
              +KNSWG+ WGEK
Sbjct: 174 YILIKNSWGTAWGEK 188

>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega Length = 216

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 15/158 (9%)
Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXX 556
           KL  L+ ++LVDC+  + GC GG    AL+Y+  N G+     YPYKA +    C     
Sbjct: 44  KLVELSEQELVDCERRSHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGT--CRAKQV 100
Query: 557 XXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLCNPK 614
                      R+    E  +   +A + P+SV + + G  +  Y GG+    +  C  K
Sbjct: 101 GGPIVKTSGVGRVQPNNEGNLLNAIA-KQPVSVVVESKGRPFQLYKGGIF---EGPCGTK 156
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
             +HA+  VGYG+   K        ++KNSWG+ WGEK
Sbjct: 157 V-DHAVTAVGYGKSGGKGYI-----LIKNSWGTAWGEK 188

>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2 Length = 240

Iteration: 1
 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 28/198 (14%)
Query: 299 AFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGC 358
           A+DWR    ++ VK+Q  C   WAFS++G VE+ +AI+ N L  LS Q+LVDC   N GC
Sbjct: 20  AYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGC 79
Query: 359 NGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEE 418
           NGG +++A + +I+ GG+  D  YPY  S++   C              Y  +P   + +
Sbjct: 80  NGGLINNAFEDMIELGGICPDGDYPY-VSDAPNLC-NIDRCTEKYGIKNYLSVP---DNK 134
Query: 419 MKKWVATRGPLSVGMNANGLF-YYSGGVID------LNQRLY----------------GT 455
           +K+ +   GP+S+ +  +  F +Y  G+ D      LN  +                 G 
Sbjct: 135 LKEALRFLGPISISVAVSDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGE 194
Query: 456 SIPYWIVKNSWGSDWGEK 473
              Y+I+KNSWG  WGE+
Sbjct: 195 KHYYYIIKNSWGQQWGER 212

>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2 Length = 240

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 15/166 (9%)
Query: 493 VLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCL 552
           +  +KL  L+ ++LVDC   N GCNGG +++A + +I+ GG+  D  YPY  S++   C 
Sbjct: 56  IRKNKLITLSEQELVDCSFKNYGCNGGLINNAFEDMIELGGICPDGDYPY-VSDAPNLC- 113
Query: 553 XXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLF-YYSGGVIDLNQRLC 611
                        Y  +P   + ++K+ +   GP+S+ +  +  F +Y  G+ D     C
Sbjct: 114 NIDRCTEKYGIKNYLSVP---DNKLKEALRFLGPISISVAVSDDFAFYKEGIFDGE---C 167
Query: 612 NPKAQNHALIIVGYGEEE-----KKDGTSIPYWIVKNSWGSDWGEK 652
             +  NHA+++VG+G +E      K G    Y+I+KNSWG  WGE+
Sbjct: 168 GDQL-NHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGER 212

>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L. From The 96- Residue Proregion To Optimized Tripeptides Length = 175

Iteration: 1
 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 83/152 (54%), Gaps = 9/152 (5%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P + DWR +G ++ VK QG+C   WAFSA G +E     +   L  LS Q LVDC    G
Sbjct: 2   PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 357 --GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
             GCNGG MD A QY+ DNGG+ S+++YPY+A+E                   +  IP  
Sbjct: 62  NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKYNPKYSVANDTGFVDIP-K 117
Query: 415 EEEEMKKWVATRGPLSVGMNANG---LFYYSG 443
           +E+ + K VAT GP+SV ++A     LFY  G
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEG 149

>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L. From The 96- Residue Proregion To Optimized Tripeptides Length = 175

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 75/137 (54%), Gaps = 12/137 (8%)
Query: 497 KLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXX 554
           +L  L+ + LVDC    G  GCNGG MD A QY+ DNGG+ S+++YPY+A+E        
Sbjct: 44  RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES---CKY 100
Query: 555 XXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANG---LFYYSGGVIDLNQRLC 611
                      +  IP  +E+ + K VAT GP+SV ++A     LFY  G   + +   C
Sbjct: 101 NPKYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD---C 156
Query: 612 NPKAQNHALIIVGYGEE 628
           + +  +H +++VGYG E
Sbjct: 157 SSEDMDHGVLVVGYGFE 173

>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F Length = 214

Iteration: 1
 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 98/193 (50%), Gaps = 20/193 (10%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P  +DWR++G ++KVK+QG C  CWAFS  G VE    +   +L  LS Q+L+DCD  + 
Sbjct: 2   PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDK 61
Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEE 416
            C GG   +A   I + GG+ ++  Y Y+                       S+     E
Sbjct: 62  ACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVELSQ----NE 117
Query: 417 EEMKKWVATRGPLSVGMNANGLFYYSGGV------------IDLNQRLYG----TSIPYW 460
           +++  W+A RGP+SV +NA G+ +Y  G+            ID    L G    + +P+W
Sbjct: 118 QKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFW 177
Query: 461 IVKNSWGSDWGEK 473
            +KNSWG+DWGEK
Sbjct: 178 AIKNSWGTDWGEK 190

>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F Length = 214

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 76/145 (52%), Gaps = 9/145 (6%)
Query: 508 DCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYS 567
           DCD  +  C GG   +A   I + GG+ ++  Y Y+                       S
Sbjct: 55  DCDKMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVELS 114
Query: 568 RIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGE 627
           +     E+++  W+A RGP+SV +NA G+ +Y  G+    + LC+P   +HA+++VGYG+
Sbjct: 115 Q----NEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQ 170
Query: 628 EEKKDGTSIPYWIVKNSWGSDWGEK 652
                 + +P+W +KNSWG+DWGEK
Sbjct: 171 R-----SDVPFWAIKNSWGTDWGEK 190

>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1 Angstrom Resolution: Location Of The Mini-Chain C-Terminal Carboxyl Group Defines Cathepsin H Aminopeptidase Function Length = 220

Iteration: 1
 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/195 (34%), Positives = 88/195 (45%), Gaps = 23/195 (11%)
Query: 297 PEAFDWRAEG-VISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDC--DM 353
           P + DWR +G  +S VK QG C  CW FS  G +E+  AI    +  L+ QQLVDC  + 
Sbjct: 2   PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 354 SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPY 413
           +N GC GG    A +YI  N G++ +  YPYK  +                    + I  
Sbjct: 62  NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDH---CKFQPDKAIAFVKDVANITM 118
Query: 414 GEEEEMKKWVATRGPLSVGMNA-NGLFYYSGGVID----------LNQRL----YG--TS 456
            +EE M + VA   P+S      N    Y  G+            +N  +    YG    
Sbjct: 119 NDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENG 178
Query: 457 IPYWIVKNSWGSDWG 471
           IPYWIVKNSWG  WG
Sbjct: 179 IPYWIVKNSWGPQWG 193

>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1 Angstrom Resolution: Location Of The Mini-Chain C-Terminal Carboxyl Group Defines Cathepsin H Aminopeptidase Function Length = 220

Iteration: 1
 Score = 88.6 bits (218), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 491 TGVLPSKLSRLATEKLVDC--DMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESE 548
             +   K+  LA ++LVDC  + +N GC GG    A +YI  N G++ +  YPYK  +  
Sbjct: 39  VAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDH 98
Query: 549 RGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNA-NGLFYYSGGVIDLN 607
                             + I   +EE M + VA   P+S      N    Y  G+    
Sbjct: 99  ---CKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSST 155
Query: 608 QRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
                P   NHA++ VGYGEE       IPYWIVKNSWG  WG
Sbjct: 156 SCHKTPDKVNHAVLAVGYGEE-----NGIPYWIVKNSWGPQWG 193

>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With Benzyloxycarbonyl-leucine-valine- Glycine-methylene Covalently Bound To Cysteine 25 Length = 216

Iteration: 1
 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 96/194 (49%), Gaps = 24/194 (12%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           LPE+ DWRA+G ++ VK QG C  CWAFS V  VE ++ I+  +L ELS Q+LVDCD+ +
Sbjct: 1   LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQS 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGE 415
            GCN G    +LQY+  N G+     YPY A +    C                R+    
Sbjct: 61  YGCNRGYQSTSLQYVAQN-GIHLRAKYPYIAKQQT--CRANQVGGPKVKTNGVGRVQSNN 117
Query: 416 EEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLYGTSIPYWI------------ 461
           E  +   +A + P+SV + + G  +  Y GG+ + +    GT + + +            
Sbjct: 118 EGSLLNAIAHQ-PVSVVVESAGRDFQNYKGGIFEGS---CGTKVDHAVTAVGYGKSGGKG 173
Query: 462 ---VKNSWGSDWGE 472
              +KNSWG  WGE
Sbjct: 174 YILIKNSWGPGWGE 187

>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With Benzyloxycarbonyl-leucine-valine- Glycine-methylene Covalently Bound To Cysteine 25 Length = 216

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 15/156 (9%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXX 557
           L  L+ ++LVDCD+ + GCN G    +LQY+  N G+     YPY A +    C      
Sbjct: 45  LVELSEQELVDCDLQSYGCNRGYQSTSLQYVAQN-GIHLRAKYPYIAKQQT--CRANQVG 101
Query: 558 XXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLCNPKA 615
                     R+    E  +   +A + P+SV + + G  +  Y GG+ + +   C  K 
Sbjct: 102 GPKVKTNGVGRVQSNNEGSLLNAIAHQ-PVSVVVESAGRDFQNYKGGIFEGS---CGTKV 157
Query: 616 QNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
            +HA+  VGYG+   K        ++KNSWG  WGE
Sbjct: 158 -DHAVTAVGYGKSGGKGYI-----LIKNSWGPGWGE 187

>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex Length = 212

Iteration: 1
 Score =  100 bits (248), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 16/188 (8%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           +PE  DWR +G ++ VK QG C  CWAFSAV  +E +  I+  +L E S Q+L+DCD  +
Sbjct: 1   IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRI-PYG 414
            GCNGG    ALQ ++   G+     YPY+    +R C                ++ PY 
Sbjct: 61  YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 415 EEEEMKKWVATRGPLSVGMNANGLFY--YSGGV--------IDLNQRLYGTSIPYWIVKN 464
           E   +  +     P+SV + A G  +  Y GG+        +D      G    Y ++KN
Sbjct: 118 EGALL--YSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPNYILIKN 175
Query: 465 SWGSDWGE 472
           SWG+ WGE
Sbjct: 176 SWGTGWGE 183

>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex Length = 212

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 21/157 (13%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXX 557
           L+  + ++L+DCD  + GCNGG    ALQ ++   G+     YPY+    +R C      
Sbjct: 45  LNEYSEQELLDCDRRSYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKG 101
Query: 558 XXXXXXXXYSRI-PYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLCNPK 614
                     ++ PY E   +  +     P+SV + A G  +  Y GG+       C  K
Sbjct: 102 PYAAKTDGVRQVQPYNEGALL--YSIANQPVSVVLEAAGKDFQLYRGGIF---VGPCGNK 156
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
             +HA+  VGYG           Y ++KNSWG+ WGE
Sbjct: 157 V-DHAVAAVGYGPN---------YILIKNSWGTGWGE 183

>pdb|1PIP|A Chain A, Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide Complex At 1.7 Angstroms Resolution: Noncovalent Binding Mode Of A Common Sequence Of Endogenous Thiol Protease Inhibitors Length = 212

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 16/188 (8%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           +PE  DWR +G ++ VK QG C  CWAFSAV  +E +  I+  +L + S Q+L+DCD  +
Sbjct: 1   IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRI-PYG 414
            GCNGG    ALQ ++   G+     YPY+    +R C                ++ PY 
Sbjct: 61  YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 415 EEEEMKKWVATRGPLSVGMNANGLFY--YSGGV--------IDLNQRLYGTSIPYWIVKN 464
           +   +  +     P+SV + A G  +  Y GG+        +D      G    Y ++KN
Sbjct: 118 QGALL--YSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPNYILIKN 175
Query: 465 SWGSDWGE 472
           SWG+ WGE
Sbjct: 176 SWGTGWGE 183

>pdb|1PIP|A Chain A, Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide Complex At 1.7 Angstroms Resolution: Noncovalent Binding Mode Of A Common Sequence Of Endogenous Thiol Protease Inhibitors Length = 212

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 21/157 (13%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXX 557
           L++ + ++L+DCD  + GCNGG    ALQ ++   G+     YPY+    +R C      
Sbjct: 45  LNQYSEQELLDCDRRSYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKG 101
Query: 558 XXXXXXXXYSRI-PYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLCNPK 614
                     ++ PY +   +  +     P+SV + A G  +  Y GG+       C  K
Sbjct: 102 PYAAKTDGVRQVQPYNQGALL--YSIANQPVSVVLQAAGKDFQLYRGGIF---VGPCGNK 156
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
             +HA+  VGYG           Y ++KNSWG+ WGE
Sbjct: 157 V-DHAVAAVGYGPN---------YILIKNSWGTGWGE 183

>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding Diversity Of E64-C To Papain S2 And S3 Subsites Length = 212

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 62/187 (33%), Positives = 91/187 (48%), Gaps = 16/187 (8%)
Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           PE  DWR +G ++ VK QG C  CWAFSAV  +E +  I+  +L + S Q+L+DCD  + 
Sbjct: 2   PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSY 61
Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRI-PYGE 415
           GCNGG    ALQ ++   G+     YPY+    +R C                ++ PY +
Sbjct: 62  GCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 416 EEEMKKWVATRGPLSVGMNANGLFY--YSGGV--------IDLNQRLYGTSIPYWIVKNS 465
              +  +     P+SV + A G  +  Y GG+        +D      G    Y ++KNS
Sbjct: 119 GALL--YSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPNYILIKNS 176
Query: 466 WGSDWGE 472
           WG+ WGE
Sbjct: 177 WGTGWGE 183

>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding Diversity Of E64-C To Papain S2 And S3 Subsites Length = 212

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 21/157 (13%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXX 557
           L++ + ++L+DCD  + GCNGG    ALQ ++   G+     YPY+    +R C      
Sbjct: 45  LNQYSEQELLDCDRRSYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKG 101
Query: 558 XXXXXXXXYSRI-PYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLCNPK 614
                     ++ PY +   +  +     P+SV + A G  +  Y GG+       C  K
Sbjct: 102 PYAAKTDGVRQVQPYNQGALL--YSIANQPVSVVLQAAGKDFQLYRGGIF---VGPCGNK 156
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
             +HA+  VGYG           Y ++KNSWG+ WGE
Sbjct: 157 V-DHAVAAVGYGPN---------YILIKNSWGTGWGE 183

>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine Protease Cms1ms2 In Complex With E-64 Length = 213

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 63/187 (33%), Positives = 94/187 (50%), Gaps = 14/187 (7%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           +P + DWR +G ++ V+ QG C  CW FS+V  VE ++ I    L  LS Q+L+DC+  +
Sbjct: 1   IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRS 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGE 415
            GC GG    ALQY+  N G+   Q YPY+    +R C                R+P   
Sbjct: 61  YGCRGGFPLYALQYVA-NSGIHLRQYYPYEG--VQRQCRASQAKGPKVKTDGVGRVPRNN 117
Query: 416 EEEMKKWVATRGPLSVGMNANGLFY--YSGGV--------IDLNQRLYGTSIPYWIVKNS 465
           E+ + + +A + P+S+ + A G  +  Y GG+        ID      G    Y ++KNS
Sbjct: 118 EQALIQRIAIQ-PVSIVVEAKGRAFQNYRGGIFAGPCGTSIDHAVAAVGYGNDYILIKNS 176
Query: 466 WGSDWGE 472
           WG+ WGE
Sbjct: 177 WGTGWGE 183

>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine Protease Cms1ms2 In Complex With E-64 Length = 213

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 23/148 (15%)
Query: 508 DCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYS 567
           DC+  + GC GG    ALQY+  N G+   Q YPY+    +R C                
Sbjct: 55  DCERRSYGCRGGFPLYALQYVA-NSGIHLRQYYPYEG--VQRQCRASQAKGPKVKTDGVG 111
Query: 568 RIPYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLCNP--KAQNHALIIV 623
           R+P   E+ + + +A + P+S+ + A G  +  Y GG+         P   + +HA+  V
Sbjct: 112 RVPRNNEQALIQRIAIQ-PVSIVVEAKGRAFQNYRGGI------FAGPCGTSIDHAVAAV 164
Query: 624 GYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
           GYG +         Y ++KNSWG+ WGE
Sbjct: 165 GYGND---------YILIKNSWGTGWGE 183

>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed With Fragments Of The Trypanosoma Brucei Cysteine Protease Inhibitor Icp Length = 212

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/188 (32%), Positives = 91/188 (48%), Gaps = 16/188 (8%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           +PE  DWR +G ++ VK QG C   WAFSAV  +E +  I+  +L + S Q+L+DCD  +
Sbjct: 1   IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRI-PYG 414
            GCNGG    ALQ ++   G+     YPY+    +R C                ++ PY 
Sbjct: 61  YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 415 EEEEMKKWVATRGPLSVGMNANGLFY--YSGGV--------IDLNQRLYGTSIPYWIVKN 464
           E   +  +     P+SV + A G  +  Y GG+        +D      G    Y ++KN
Sbjct: 118 EGALL--YSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPNYILIKN 175
Query: 465 SWGSDWGE 472
           SWG+ WGE
Sbjct: 176 SWGTGWGE 183

>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed With Fragments Of The Trypanosoma Brucei Cysteine Protease Inhibitor Icp Length = 212

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 21/157 (13%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXX 557
           L++ + ++L+DCD  + GCNGG    ALQ ++   G+     YPY+    +R C      
Sbjct: 45  LNQYSEQELLDCDRRSYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKG 101
Query: 558 XXXXXXXXYSRI-PYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLCNPK 614
                     ++ PY E   +  +     P+SV + A G  +  Y GG+       C  K
Sbjct: 102 PYAAKTDGVRQVQPYNEGALL--YSIANQPVSVVLEAAGKDFQLYRGGIF---VGPCGNK 156
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
             +HA+  VGYG           Y ++KNSWG+ WGE
Sbjct: 157 V-DHAVAAVGYGPN---------YILIKNSWGTGWGE 183

>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of Recombinant Human Stefin B In Complex With The Cysteine Proteinase Papain: A Novel Type Of Proteinase Inhibitor Interaction Length = 212

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 16/188 (8%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           +PE  DWR +G ++ VK QG C   WAFSAV  +E +  I+  +L + S Q+L+DCD  +
Sbjct: 1   IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRI-PYG 414
            GCNGG    ALQ ++   G+     YPY+    +R C                ++ PY 
Sbjct: 61  YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 415 EEEEMKKWVATRGPLSVGMNANGLFY--YSGGV--------IDLNQRLYGTSIPYWIVKN 464
           +   +  +     P+SV + A G  +  Y GG+        +D      G    Y ++KN
Sbjct: 118 QGALL--YSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPNYILIKN 175
Query: 465 SWGSDWGE 472
           SWG+ WGE
Sbjct: 176 SWGTGWGE 183

>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of Recombinant Human Stefin B In Complex With The Cysteine Proteinase Papain: A Novel Type Of Proteinase Inhibitor Interaction Length = 212

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 21/157 (13%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXX 557
           L++ + ++L+DCD  + GCNGG    ALQ ++   G+     YPY+    +R C      
Sbjct: 45  LNQYSEQELLDCDRRSYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKG 101
Query: 558 XXXXXXXXYSRI-PYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLCNPK 614
                     ++ PY +   +  +     P+SV + A G  +  Y GG+       C  K
Sbjct: 102 PYAAKTDGVRQVQPYNQGALL--YSIANQPVSVVLQAAGKDFQLYRGGIF---VGPCGNK 156
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
             +HA+  VGYG           Y ++KNSWG+ WGE
Sbjct: 157 V-DHAVAAVGYGPN---------YILIKNSWGTGWGE 183

>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain Length = 212

Iteration: 1
 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 91/188 (48%), Gaps = 16/188 (8%)
Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           +PE  DWR +G ++ VK QG C   WAFSAV  +E +  I+  +L E S Q+L+DCD  +
Sbjct: 1   IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRI-PYG 414
            GCNGG    ALQ ++   G+     YPY+    +R C                ++ PY 
Sbjct: 61  YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 415 EEEEMKKWVATRGPLSVGMNANGLFY--YSGGV--------IDLNQRLYGTSIPYWIVKN 464
           E   +  +     P+SV + A G  +  Y GG+        +D      G    Y ++KN
Sbjct: 118 EGALL--YSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPNYILIKN 175
Query: 465 SWGSDWGE 472
           SWG+ WGE
Sbjct: 176 SWGTGWGE 183

>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain Length = 212

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 21/157 (13%)
Query: 498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXX 557
           L+  + ++L+DCD  + GCNGG    ALQ ++   G+     YPY+    +R C      
Sbjct: 45  LNEYSEQELLDCDRRSYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEG--VQRYCRSREKG 101
Query: 558 XXXXXXXXYSRI-PYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLCNPK 614
                     ++ PY E   +  +     P+SV + A G  +  Y GG+       C  K
Sbjct: 102 PYAAKTDGVRQVQPYNEGALL--YSIANQPVSVVLEAAGKDFQLYRGGIF---VGPCGNK 156
Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
             +HA+  VGYG           Y ++KNSWG+ WGE
Sbjct: 157 V-DHAVAAVGYGPN---------YILIKNSWGTGWGE 183

>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric Cysteine Protease Of The Papain Family Length = 438

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 100/213 (46%), Gaps = 44/213 (20%)
Query: 296 LPEAFDWR-AEGV--ISKVKEQGKCACCWAFSAVGVVEA-MHAIQGNSLTE-LSVQQLVD 350
           LPE++DWR   G+  +S V+ Q  C  C++F+++G++EA +  +  NS T  LS Q++V 
Sbjct: 206 LPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEVVS 265
Query: 351 CDMSNGGCNGGRMDDALQYII-----DNGGVVSDQAYPYKASES----ERGCLXXXXXXX 401
           C     GC+GG       Y+I      + GVV +  +PY A+++    +  CL       
Sbjct: 266 CSPYAQGCDGG-----FPYLIAGKYAQDFGVVEENCFPYTATDAPCKPKENCLRYYSSEY 320
Query: 402 XXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNAN--------GLFYYSG-----GVIDL 448
                 Y       E  MK  +   GP++V    +        G+++++G        +L
Sbjct: 321 YYVGGFYGGC---NEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFEL 377
Query: 449 NQRL-----YG----TSIPYWIVKNSWGSDWGE 472
                    YG    T + YWIVKNSWGS WGE
Sbjct: 378 TNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGE 410

>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric Cysteine Protease Of The Papain Family Length = 438

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 24/169 (14%)
Query: 496 SKLSRLATEKLVDCDMSNGGCNGGRMDDALQYII-----DNGGVVSDQAYPYKASES--- 547
           S+   L+ +++V C     GC+GG       Y+I      + GVV +  +PY A+++   
Sbjct: 253 SQTPILSPQEVVSCSPYAQGCDGG-----FPYLIAGKYAQDFGVVEENCFPYTATDAPCK 307
Query: 548 -ERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDL 606
            +  CL             Y       E  MK  +   GP++V    +  F +    I  
Sbjct: 308 PKENCLRYYSSEYYYVGGFYGGC---NEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYH 364
Query: 607 NQRLCNP----KAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
           +  L +P    +  NHA+++VGYG   K   T + YWIVKNSWGS WGE
Sbjct: 365 HTGLSDPFNPFELTNHAVLLVGYG---KDPVTGLDYWIVKNSWGSQWGE 410

>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1 Length = 223

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 28/207 (13%)
Query: 284 AFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTEL 343
           A + NS+    ++P   D R+   ++ ++ QG C  CWAFS V   E+ +    N+  +L
Sbjct: 3   ACRINSV----NVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDL 58
Query: 344 SVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXX 403
           S Q+LVDC  S  GC+G  +   ++YI  N GVV +++YPY A E               
Sbjct: 59  SEQELVDC-ASQHGCHGDTIPRGIEYIQQN-GVVEERSYPYVAREQR----CRRPNSQHY 112
Query: 404 XXXXYSRIPYGEEEEMKKWVA-TRGPLSVGMNANGLF---YYSGGVI------------D 447
               Y +I   + +++++ +  T   ++V +    L    +Y G  I             
Sbjct: 113 GISNYCQIYPPDVKQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPNYHA 172
Query: 448 LNQRLYGTSI--PYWIVKNSWGSDWGE 472
           +N   YG++    YWIV+NSW + WG+
Sbjct: 173 VNIVGYGSTQGDDYWIVRNSWDTTWGD 199

>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1 Length = 223

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 17/155 (10%)
Query: 501 LATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXX 560
           L+ ++LVDC  S  GC+G  +   ++YI  NG VV +++YPY A E              
Sbjct: 58  LSEQELVDC-ASQHGCHGDTIPRGIEYIQQNG-VVEERSYPYVAREQR----CRRPNSQH 111
Query: 561 XXXXXYSRIPYGEEEEMKKWVA-TRGPLSVGMNANGLF---YYSGGVIDLNQRLCNPKAQ 616
                Y +I   + +++++ +  T   ++V +    L    +Y G  I  +     P   
Sbjct: 112 YGISNYCQIYPPDVKQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPNY- 170
Query: 617 NHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
            HA+ IVGYG  +  D     YWIV+NSW + WG+
Sbjct: 171 -HAVNIVGYGSTQGDD-----YWIVRNSWDTTWGD 199

>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin C Length = 441

Iteration: 1
 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 44/213 (20%)
Query: 296 LPEAFDWR-AEGV--ISKVKEQGKCACCWAFSAVGVVEA-MHAIQGNSLTE-LSVQQLVD 350
           LP ++DWR   G+  +S V+ Q  C  C++F+++G++EA +  +  NS T  LS Q++V 
Sbjct: 207 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 266
Query: 351 CDMSNGGCNGGRMDDALQYII-----DNGGVVSDQAYPYKASES----ERGCLXXXXXXX 401
           C     GC GG       Y+I      + G+V +  +PY  ++S    +  C        
Sbjct: 267 CSQYAQGCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEY 321
Query: 402 XXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNA--------NGLFYYSG-----GVIDL 448
                 Y       E  MK  +   GP++V             G+++++G        +L
Sbjct: 322 HYVGGFYGGC---NEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPFEL 378
Query: 449 NQRL-----YGT----SIPYWIVKNSWGSDWGE 472
                    YGT     + YWIVKNSWG+ WGE
Sbjct: 379 TNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGE 411

>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin C Length = 441

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 24/169 (14%)
Query: 496 SKLSRLATEKLVDCDMSNGGCNGGRMDDALQYII-----DNGGVVSDQAYPYKASES--- 547
           S+   L+ +++V C     GC GG       Y+I      + G+V +  +PY  ++S   
Sbjct: 254 SQTPILSPQEVVSCSQYAQGCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTDSPCK 308
Query: 548 -ERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDL 606
            +  C              Y       E  MK  +   GP++V       F +    I  
Sbjct: 309 MKEDCFRYYSSEYHYVGGFYGGC---NEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYH 365
Query: 607 NQRLCNP----KAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
           +  L +P    +  NHA+++VGYG +     + + YWIVKNSWG+ WGE
Sbjct: 366 HTGLRDPFNPFELTNHAVLLVGYGTD---SASGMDYWIVKNSWGTGWGE 411

>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen Der P 1 In Its Pro Form At 1.61 A Resolution Length = 312

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 120/290 (41%), Gaps = 45/290 (15%)
Query: 201 DKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLTGLNLDS 260
           +K Y++ ED     +NF+ +V                   K+   +   +  L+ L+LD 
Sbjct: 16  NKSYATFEDEEAARKNFLESV-------------------KYVQSNGGAINHLSDLSLDE 56
Query: 261 TLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACC 320
                  S +A F   +T  ++ A + N+     + P   D R    ++ ++ QG C   
Sbjct: 57  FKNRFLMSAEA-FEHLKTQFDLNA-ETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSA 114
Query: 321 WAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQ 380
           WAFS V   E+ +    +   +L+ Q+LVDC  S  GC+G  +   ++YI  N GVV + 
Sbjct: 115 WAFSGVAATESAYLAYRDQSLDLAEQELVDC-ASQHGCHGDTIPRGIEYIQHN-GVVQES 172
Query: 381 AYPYKASESERGCLXXXXXXXXXXXXXYSRIPYGEEEEMKKWVA-TRGPLSVGM---NAN 436
            Y Y A   E+ C              Y +I      ++++ +A T   ++V +   + +
Sbjct: 173 YYRYVA--REQSC--RRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLD 228
Query: 437 GLFYYSGGVIDLNQRLY--------------GTSIPYWIVKNSWGSDWGE 472
              +Y G  I      Y                 + YWIV+NSW ++WG+
Sbjct: 229 AFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGD 278

>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen Der P 1 In Its Pro Form At 1.61 A Resolution Length = 312

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 17/155 (10%)
Query: 501 LATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXX 560
           LA ++LVDC  S  GC+G  +   ++YI  NG VV +  Y Y A E  + C         
Sbjct: 137 LAEQELVDC-ASQHGCHGDTIPRGIEYIQHNG-VVQESYYRYVARE--QSC--RRPNAQR 190
Query: 561 XXXXXYSRIPYGEEEEMKKWVA-TRGPLSVGM---NANGLFYYSGGVIDLNQRLCNPKAQ 616
                Y +I      ++++ +A T   ++V +   + +   +Y G  I   QR    +  
Sbjct: 191 FGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTII--QRDNGYQPN 248
Query: 617 NHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
            HA+ IVGY   +  D     YWIV+NSW ++WG+
Sbjct: 249 YHAVNIVGYSNAQGVD-----YWIVRNSWDTNWGD 278

>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1 Length = 222

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 86/197 (43%), Gaps = 24/197 (12%)
Query: 295 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS 354
           + P   D R    ++ ++ QG C  CWAFS V   E+ +    N   +L+ Q+LVDC  S
Sbjct: 9   NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDC-AS 67
Query: 355 NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
             GC+G  +   ++YI  N GVV +  Y Y A   E+ C              Y +I   
Sbjct: 68  QHGCHGDTIPRGIEYIQHN-GVVQESYYRYVA--REQSC--RRPNAQRFGISNYCQIYPP 122
Query: 415 EEEEMKKWVA-TRGPLSVGM---NANGLFYYSGGVIDLNQRLY--------------GTS 456
              ++++ +A T   ++V +   + +   +Y G  I      Y                 
Sbjct: 123 NVNKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQG 182
Query: 457 IPYWIVKNSWGSDWGEK 473
           + YWIV+NSW ++WG+ 
Sbjct: 183 VDYWIVRNSWDTNWGDN 199

>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1 Length = 222

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 17/156 (10%)
Query: 501 LATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXX 560
           LA ++LVDC  S  GC+G  +   ++YI  NG VV +  Y Y A E  + C         
Sbjct: 57  LAEQELVDC-ASQHGCHGDTIPRGIEYIQHNG-VVQESYYRYVARE--QSC--RRPNAQR 110
Query: 561 XXXXXYSRIPYGEEEEMKKWVA-TRGPLSVGM---NANGLFYYSGGVIDLNQRLCNPKAQ 616
                Y +I      ++++ +A T   ++V +   + +   +Y G  I   QR    +  
Sbjct: 111 FGISNYCQIYPPNVNKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTII--QRDNGYQPN 168
Query: 617 NHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
            HA+ IVGY   +  D     YWIV+NSW ++WG+ 
Sbjct: 169 YHAVNIVGYSNAQGVD-----YWIVRNSWDTNWGDN 199

>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1 Allergen Length = 222

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 24/197 (12%)
Query: 295 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS 354
           + P   D R    ++ ++ QG C  CWAFS V   E+ +        +L+ Q+LVDC  S
Sbjct: 9   NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDC-AS 67
Query: 355 NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
             GC+G  +   ++YI  N GVV +  Y Y A   E+ C              Y +I   
Sbjct: 68  QHGCHGDTIPRGIEYIQHN-GVVQESYYRYVA--REQSC--RRPNAQRFGISNYCQIYPP 122
Query: 415 EEEEMKKWVA-TRGPLSVGM---NANGLFYYSGGVIDLNQRLY--------------GTS 456
              ++++ +A T   ++V +   + +   +Y G  I      Y                 
Sbjct: 123 NANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQG 182
Query: 457 IPYWIVKNSWGSDWGEK 473
           + YWIV+NSW ++WG+ 
Sbjct: 183 VDYWIVRNSWDTNWGDN 199

>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1 Allergen Length = 222

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 17/156 (10%)
Query: 501 LATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXX 560
           LA ++LVDC  S  GC+G  +   ++YI  NG VV +  Y Y A E  + C         
Sbjct: 57  LAEQELVDC-ASQHGCHGDTIPRGIEYIQHNG-VVQESYYRYVARE--QSC--RRPNAQR 110
Query: 561 XXXXXYSRIPYGEEEEMKKWVA-TRGPLSVGM---NANGLFYYSGGVIDLNQRLCNPKAQ 616
                Y +I      ++++ +A T   ++V +   + +   +Y G  I   QR    +  
Sbjct: 111 FGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTII--QRDNGYQPN 168
Query: 617 NHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
            HA+ IVGY   +  D     YWIV+NSW ++WG+ 
Sbjct: 169 YHAVNIVGYSNAQGVD-----YWIVRNSWDTNWGDN 199

>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1 Length = 222

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 24/197 (12%)
Query: 295 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS 354
           + P   D R    ++ ++ QG C   WAFS V   E+ +        +L+ Q+LVDC  S
Sbjct: 9   NAPAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDC-AS 67
Query: 355 NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXXXXXXXYSRIPYG 414
             GC+G  +   ++YI  N GVV +  Y Y A   E+ C              Y +I   
Sbjct: 68  QHGCHGDTIPRGIEYIQHN-GVVQESYYRYVA--REQSC--RRPNAQRFGISNYCQIYPP 122
Query: 415 EEEEMKKWVA-TRGPLSVGM---NANGLFYYSGGVIDLNQRLY--------------GTS 456
              ++++ +A T   ++V +   + +   +Y G  I      Y                 
Sbjct: 123 NANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQG 182
Query: 457 IPYWIVKNSWGSDWGEK 473
           + YWIV+NSW ++WG+ 
Sbjct: 183 VDYWIVRNSWDTNWGDN 199

>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1 Length = 222

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 17/156 (10%)
Query: 501 LATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLXXXXXXXX 560
           LA ++LVDC  S  GC+G  +   ++YI  NG VV +  Y Y A E  + C         
Sbjct: 57  LAEQELVDC-ASQHGCHGDTIPRGIEYIQHNG-VVQESYYRYVARE--QSC--RRPNAQR 110
Query: 561 XXXXXYSRIPYGEEEEMKKWVA-TRGPLSVGM---NANGLFYYSGGVIDLNQRLCNPKAQ 616
                Y +I      ++++ +A T   ++V +   + +   +Y G  I   QR    +  
Sbjct: 111 FGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTII--QRDNGYQPN 168
Query: 617 NHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
            HA+ IVGY   +  D     YWIV+NSW ++WG+ 
Sbjct: 169 YHAVNIVGYSNAQGVD-----YWIVRNSWDTNWGDN 199

>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In Complex With Ca074 Inhibitor Length = 254

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 84/228 (36%), Gaps = 50/228 (21%)
Query: 295 DLPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQ--GNSLTELSVQQL 348
           ++P +FD    W     I+ +++Q +C  CWAF AV  +     IQ  G    ELS   L
Sbjct: 2   EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDL 61
Query: 349 VDCDMSNG-GCNGGRMDDALQYIIDNGGVVSD--------QAYPYKASESER-------G 392
           + C  S G GC GG +  A  Y +  G V           + YP+   E          G
Sbjct: 62  LSCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCG 121
Query: 393 CLXXXXXXXXXXXXXYSRIPY--------------GEEEEMKKWVATRGPLSVGMNANGL 438
                            + PY               +E+ ++K +   GP+  G      
Sbjct: 122 SKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYED 181
Query: 439 FY-YSGGVID--LNQRLYGTSI-----------PYWIVKNSWGSDWGE 472
           F  Y  G+      + L G +I           PYW++ NSW  DWGE
Sbjct: 182 FLNYKSGIYKHITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGE 229

>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In Complex With Ca074 Inhibitor Length = 254

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 65/181 (35%), Gaps = 40/181 (22%)
Query: 502 ATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSD--------QAYPYKASESER---- 549
           A + L  C+    GC GG +  A  Y +  G V           + YP+   E       
Sbjct: 58  AVDLLSCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKY 117
Query: 550 ---GCLXXXXXXXXXXXXXYSRIPY--------------GEEEEMKKWVATRGPLSVGMN 592
              G                 + PY               +E+ ++K +   GP+  G  
Sbjct: 118 PPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFT 177
Query: 593 A--NGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
              + L Y SG    + + +       HA+ I+G+G E K      PYW++ NSW  DWG
Sbjct: 178 VYEDFLNYKSG----IYKHITGETLGGHAIRIIGWGVENK-----APYWLIANSWNEDWG 228
Query: 651 E 651
           E
Sbjct: 229 E 229

>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs Free-electron Laser Pulse Data By Serial Femtosecond X-ray Crystallography Length = 340

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 89/218 (40%), Gaps = 44/218 (20%)
Query: 296 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSL-TELSVQQLVD 350
           LP +FD    W     I ++ +Q  C  CWA +A   +       G      +S   L+ 
Sbjct: 94  LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 153
Query: 351 CDMSNG-GCNGGRMDDALQYIIDNGGVVSD--QAYPYK----ASESERGCLXXXXXXXXX 403
           C    G GCNGG  D A  Y   + G+VSD  Q YP+      S+S+ G           
Sbjct: 154 CCSDCGDGCNGGDPDRAWAY-FSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDT 212
Query: 404 XXXXYS----RIPY------------GEEEEMKKWVATRGPLSVGMNA--------NGLF 439
               Y+     IP             GE++ M++ +  RGP  V  +         +G++
Sbjct: 213 PKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRE-LFFRGPFEVAFDVYEDFIAYNSGVY 271
Query: 440 YYSGGVIDLNQRL----YGTS--IPYWIVKNSWGSDWG 471
           ++  G       +    +GTS  +PYW + NSW ++WG
Sbjct: 272 HHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWG 309

>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs Free-electron Laser Pulse Data By Serial Femtosecond X-ray Crystallography Length = 340

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 86/218 (39%), Gaps = 40/218 (18%)
Query: 456 SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLPSKLSRLATEKLVDCDMSNGG 515
           +IP    +++ GS W         +S    R   + GV    +S  A + L  C     G
Sbjct: 109 TIPQIADQSACGSCWA-----VAAASAMSDRFCTMGGVQDVHIS--AGDLLACCSDCGDG 161
Query: 516 CNGGRMDDALQYIIDNGGVVSD--QAYPYKA----SESERGCLXXXXXXXXXXXXXYS-- 567
           CNGG  D A  Y   + G+VSD  Q YP+      S+S+ G               Y+  
Sbjct: 162 CNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCD 220
Query: 568 --RIPY------------GEEEEMKKWVATRGPLSVGMNA-NGLFYYSGGVIDLNQRLCN 612
              IP             GE++ M++ +  RGP  V  +       Y+ GV      +  
Sbjct: 221 DPTIPVVNYRSWTSYALQGEDDYMRE-LFFRGPFEVAFDVYEDFIAYNSGVY---HHVSG 276
Query: 613 PKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
                HA+ +VG+G         +PYW + NSW ++WG
Sbjct: 277 QYLGGHAVRLVGWGTSN-----GVPYWKIANSWNTEWG 309

>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei Length = 317

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 89/218 (40%), Gaps = 44/218 (20%)
Query: 296 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSL-TELSVQQLVD 350
           LP +FD    W     I ++ +Q  C  CWA +A   +       G      +S   L+ 
Sbjct: 71  LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 130
Query: 351 CDMSNG-GCNGGRMDDALQYIIDNGGVVSD--QAYPYK----ASESERGCLXXXXXXXXX 403
           C    G GCNGG  D A  Y   + G+VSD  Q YP+      S+S+ G           
Sbjct: 131 CCSDCGDGCNGGDPDRAWAY-FSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDT 189
Query: 404 XXXXYS----RIPY------------GEEEEMKKWVATRGPLSVGMNA--------NGLF 439
               Y+     IP             GE++ M++ +  RGP  V  +         +G++
Sbjct: 190 PKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRE-LFFRGPFEVAFDVYEDFIAYNSGVY 248
Query: 440 YYSGGVIDLNQRL----YGTS--IPYWIVKNSWGSDWG 471
           ++  G       +    +GTS  +PYW + NSW ++WG
Sbjct: 249 HHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWG 286

>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 87/218 (39%), Gaps = 40/218 (18%)
Query: 456 SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLPSKLSRLATEKLVDCDMSNGG 515
           +IP    +++ GS W         +S    R   + GV    +S  A + L  C     G
Sbjct: 86  TIPQIADQSACGSCWA-----VAAASAMSDRFCTMGGVQDVHIS--AGDLLACCSDCGDG 138
Query: 516 CNGGRMDDALQYIIDNGGVVSD--QAYPYKA----SESERGCLXXXXXXXXXXXXXYS-- 567
           CNGG  D A  Y   + G+VSD  Q YP+      S+S+ G               Y+  
Sbjct: 139 CNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCD 197
Query: 568 --RIPY------------GEEEEMKKWVATRGPLSVGMNANGLFY-YSGGVIDLNQRLCN 612
              IP             GE++ M++ +  RGP  V  +    F  Y+ GV      +  
Sbjct: 198 DPTIPVVNYRSWTSYALQGEDDYMRE-LFFRGPFEVAFDVYEDFIAYNSGVY---HHVSG 253
Query: 613 PKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
                HA+ +VG+G         +PYW + NSW ++WG
Sbjct: 254 QYLGGHAVRLVGWGTSN-----GVPYWKIANSWNTEWG 286

>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex With Ca074 Length = 325

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 89/218 (40%), Gaps = 44/218 (20%)
Query: 296 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSL-TELSVQQLVD 350
           LP +FD    W     I ++ +Q  C  CWA +A   +       G      +S   L+ 
Sbjct: 72  LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 131
Query: 351 CDMSNG-GCNGGRMDDALQYIIDNGGVVSD--QAYPYK----ASESERGCLXXXXXXXXX 403
           C    G GCNGG  D A  Y   + G+VSD  Q YP+      S+S+ G           
Sbjct: 132 CCSDCGDGCNGGDPDRAWAY-FSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDT 190
Query: 404 XXXXYS----RIPY------------GEEEEMKKWVATRGPLSVGMNA--------NGLF 439
               Y+     IP             GE++ M++ +  RGP  V  +         +G++
Sbjct: 191 PKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRE-LFFRGPFEVAFDVYEDFIAYNSGVY 249
Query: 440 YYSGGVIDLNQRL----YGTS--IPYWIVKNSWGSDWG 471
           ++  G       +    +GTS  +PYW + NSW ++WG
Sbjct: 250 HHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWG 287

>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex With Ca074 Length = 325

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 86/218 (39%), Gaps = 40/218 (18%)
Query: 456 SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLPSKLSRLATEKLVDCDMSNGG 515
           +IP    +++ GS W         +S    R   + GV    +S  A + L  C     G
Sbjct: 87  TIPQIADQSACGSCWA-----VAAASAMSDRFCTMGGVQDVHIS--AGDLLACCSDCGDG 139
Query: 516 CNGGRMDDALQYIIDNGGVVSD--QAYPYKA----SESERGCLXXXXXXXXXXXXXYS-- 567
           CNGG  D A  Y   + G+VSD  Q YP+      S+S+ G               Y+  
Sbjct: 140 CNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCD 198
Query: 568 --RIPY------------GEEEEMKKWVATRGPLSVGMNA-NGLFYYSGGVIDLNQRLCN 612
              IP             GE++ M++ +  RGP  V  +       Y+ GV      +  
Sbjct: 199 DPTIPVVNYRSWTSYALQGEDDYMRE-LFFRGPFEVAFDVYEDFIAYNSGVY---HHVSG 254
Query: 613 PKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG 650
                HA+ +VG+G         +PYW + NSW ++WG
Sbjct: 255 QYLGGHAVRLVGWGTSN-----GVPYWKIANSWNTEWG 287

>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At 3.2 Angstrom Resolution Length = 317

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 84/228 (36%), Gaps = 52/228 (22%)
Query: 296 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSL--TELSVQQLV 349
           LP +FD    W     I ++++QG C  CWAF AV  +     I  N+    E+S + L+
Sbjct: 64  LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 123
Query: 350 DC--DMSNGGCNGGRMDDALQYIIDNGGVVSDQAY-------PYKASESER-------GC 393
            C   M   GCNGG   +A  +     G+VS   Y       PY     E         C
Sbjct: 124 TCCGSMCGDGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 182
Query: 394 LXXXXXXXXXXXXXYSRIP-------YG--------EEEEMKKWVATRGPL--SVGMNAN 436
                             P       YG         E+++   +   GP+  +  + ++
Sbjct: 183 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 242
Query: 437 GLFYYSGGVIDLNQRLYG------------TSIPYWIVKNSWGSDWGE 472
            L Y SG    +   + G               PYW+V NSW +DWG+
Sbjct: 243 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGD 290

>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added To An Endopeptidase Framework Creates The Machine For Activation Of Granular Serine Proteases Length = 164

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 15/104 (14%)
Query: 296 LPEAFDWR-AEGV--ISKVKEQGKCACCWAFSAVGVVEA-MHAIQGNSLTE-LSVQQLVD 350
           LP ++DWR   G+  +S V+ Q  C  C++F+++G++EA +  +  NS T  LS Q++V 
Sbjct: 1   LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 351 CDMSNGGCNGGRMDDALQYII-----DNGGVVSDQAYPYKASES 389
           C     GC GG       Y+I      + G+V +  +PY  ++S
Sbjct: 61  CSQYAQGCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTDS 99

>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline Length = 256

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 84/228 (36%), Gaps = 52/228 (22%)
Query: 296 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSL--TELSVQQLV 349
           LP +FD    W     I ++++QG C  CWAF AV  +     I  N+    E+S + L+
Sbjct: 3   LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 62
Query: 350 DC--DMSNGGCNGGRMDDALQYIIDNGGVVSDQAY-------PYKASESER-------GC 393
            C   M   GCNGG   +A  +     G+VS   Y       PY     E         C
Sbjct: 63  TCCGSMCGDGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 121
Query: 394 LXXXXXXXXXXXXXYSRIP-------YG--------EEEEMKKWVATRGPL--SVGMNAN 436
                             P       YG         E+++   +   GP+  +  + ++
Sbjct: 122 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 181
Query: 437 GLFYYSGGVIDLNQRLYG------------TSIPYWIVKNSWGSDWGE 472
            L Y SG    +   + G               PYW+V NSW +DWG+
Sbjct: 182 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGD 229

>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A Length = 254

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 84/228 (36%), Gaps = 52/228 (22%)
Query: 296 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSL--TELSVQQLV 349
           LP +FD    W     I ++++QG C  CWAF AV  +     I  N+    E+S + L+
Sbjct: 1   LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 350 DC--DMSNGGCNGGRMDDALQYIIDNGGVVSDQAY-------PYKASESER-------GC 393
            C   M   GCNGG   +A  +     G+VS   Y       PY     E         C
Sbjct: 61  TCCGSMCGDGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 119
Query: 394 LXXXXXXXXXXXXXYSRIP-------YG--------EEEEMKKWVATRGPL--SVGMNAN 436
                             P       YG         E+++   +   GP+  +  + ++
Sbjct: 120 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 179
Query: 437 GLFYYSGGVIDLNQRLYG------------TSIPYWIVKNSWGSDWGE 472
            L Y SG    +   + G               PYW+V NSW +DWG+
Sbjct: 180 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGD 227

>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor Length = 261

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 84/228 (36%), Gaps = 52/228 (22%)
Query: 296 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSL--TELSVQQLV 349
           LP +FD    W     I ++++QG C  CWAF AV  +     I  N+    E+S + L+
Sbjct: 2   LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 350 DC--DMSNGGCNGGRMDDALQYIIDNGGVVSDQAY-------PYKASESER-------GC 393
            C   M   GCNGG   +A  +     G+VS   Y       PY     E         C
Sbjct: 62  TCCGSMCGDGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 120
Query: 394 LXXXXXXXXXXXXXYSRIP-------YG--------EEEEMKKWVATRGPL--SVGMNAN 436
                             P       YG         E+++   +   GP+  +  + ++
Sbjct: 121 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 180
Query: 437 GLFYYSGGVIDLNQRLYG------------TSIPYWIVKNSWGSDWGE 472
            L Y SG    +   + G               PYW+V NSW +DWG+
Sbjct: 181 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGD 228

>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine Protease With The Proregion Covalently Linked To The Active Site Cysteine Length = 277

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 86/212 (40%), Gaps = 35/212 (16%)
Query: 295 DLPEAFDWR-AEGV--ISKVKEQG---KCACCWAFSAVGVVEAMHAIQGNSL---TELSV 345
           DLP+++DWR  +GV   S  + Q     C  CWA ++   +     I+       T LSV
Sbjct: 35  DLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSV 94
Query: 346 QQLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESE----RGCLXXXXXXX 401
           Q ++DC  + G C GG       Y   +G +  +    Y+A + E      C        
Sbjct: 95  QNVIDCGNA-GSCEGGNDLSVWDYAHQHG-IPDETCNNYQAKDQECDKFNQCGTCNEFKE 152
Query: 402 XXXXXXYSRIPYGE------EEEMKKWVATRGPLSVG-MNANGLFYYSGGVIDLNQRL-- 452
                 Y+    G+       E+M   +   GP+S G M    L  Y+GG+    Q    
Sbjct: 153 CHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTY 212
Query: 453 ---------YGTS--IPYWIVKNSWGSDWGEK 473
                    +G S    YWIV+NSWG  WGE+
Sbjct: 213 INHVVSVAGWGISDGTEYWIVRNSWGEPWGER 244

>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine Protease With The Proregion Covalently Linked To The Active Site Cysteine Length = 277

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 76/180 (42%), Gaps = 23/180 (12%)
Query: 487 DLELTGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASE 546
           +++  G  PS L  L+ + ++DC  + G C GG       Y   +G +  +    Y+A +
Sbjct: 80  NIKRKGAWPSTL--LSVQNVIDCGNA-GSCEGGNDLSVWDYAHQHG-IPDETCNNYQAKD 135
Query: 547 SE----RGCLXXXXXXXXXXXXXYSRIPYGE------EEEMKKWVATRGPLSVG-MNANG 595
            E      C              Y+    G+       E+M   +   GP+S G M    
Sbjct: 136 QECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATER 195
Query: 596 LFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVML 655
           L  Y+GG+    Q   +    NH + + G+G     DGT   YWIV+NSWG  WGE+  L
Sbjct: 196 LANYTGGIYAEYQ---DTTYINHVVSVAGWG---ISDGTE--YWIVRNSWGEPWGERGWL 247

>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 260

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 82/229 (35%), Gaps = 52/229 (22%)
Query: 295 DLPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSL--TELSVQQL 348
           +LPE+FD    W     I+++++QG C  CWAF AV  +     I  N     E+S + L
Sbjct: 6   NLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 65
Query: 349 VDCD--MSNGGCNGGRMDDALQYIIDNGGVVSDQAY-------PYKASESERGC------ 393
           + C       GCNGG    A  +     G+VS   Y       PY     E         
Sbjct: 66  LTCCGIQCGDGCNGGYPSGAWNFWTRK-GLVSGGVYNSHIGCLPYTIPPCEHHVNGARPP 124
Query: 394 -------------LXXXXXXXXXXXXXYSRIPYG---EEEEMKKWVATRGPLSVGMNA-- 435
                                      Y    Y     E+E+   +   GP+        
Sbjct: 125 CTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFS 184
Query: 436 ------NGLFYYSGGVIDLNQ--RLYGTSI----PYWIVKNSWGSDWGE 472
                 +G++ +  G +      R+ G  I    PYW+V NSW +DWG+
Sbjct: 185 DFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGD 233

>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 254

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 81/228 (35%), Gaps = 52/228 (22%)
Query: 296 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSL--TELSVQQLV 349
           LPE+FD    W     I+++++QG C  CWAF AV  +     I  N     E+S + L+
Sbjct: 1   LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 350 DCD--MSNGGCNGGRMDDALQYIIDNGGVVSDQAY-------PYKASESERGC------- 393
            C       GCNGG    A  +     G+VS   Y       PY     E          
Sbjct: 61  TCCGIQCGDGCNGGYPSGAWNFWTRK-GLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPC 119
Query: 394 ------------LXXXXXXXXXXXXXYSRIPYG---EEEEMKKWVATRGPLSVGMNA--- 435
                                     Y    Y     E+E+   +   GP+         
Sbjct: 120 TGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSD 179
Query: 436 -----NGLFYYSGGVIDLNQ--RLYGTSI----PYWIVKNSWGSDWGE 472
                +G++ +  G +      R+ G  I    PYW+V NSW +DWG+
Sbjct: 180 FLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGD 227

>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X Length = 242

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 23/180 (12%)
Query: 487 DLELTGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASE 546
           +++  G  PS L  L+ + ++DC  + G C GG       Y   +G +  +    Y+A +
Sbjct: 45  NIKRKGAWPSTL--LSVQNVIDCGNA-GSCEGGNDLSVWDYAHQHG-IPDETCNNYQAKD 100
Query: 547 SE----RGCLXXXXXXXXXXXXXYSRIPYGE------EEEMKKWVATRGPLSVGMNAN-G 595
            E      C              Y+    G+       E+M   +   GP+S G+ A   
Sbjct: 101 QECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATER 160
Query: 596 LFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVML 655
           L  Y+GG+    Q   +    NH + + G+G     DGT   YWIV+NSWG  WGE+  L
Sbjct: 161 LANYTGGIYAEYQ---DTTYINHVVSVAGWG---ISDGTE--YWIVRNSWGEPWGERGWL 212

>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex Length = 266

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 83/228 (36%), Gaps = 52/228 (22%)
Query: 296 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSL--TELSVQQLV 349
           LP +FD    W     I ++++QG C   WAF AV  +     I  N+    E+S + L+
Sbjct: 7   LPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 66
Query: 350 DC--DMSNGGCNGGRMDDALQYIIDNGGVVSDQAY-------PYKASESER-------GC 393
            C   M   GCNGG   +A  +     G+VS   Y       PY     E         C
Sbjct: 67  TCCGSMCGDGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEAHVNGARPPC 125
Query: 394 LXXXXXXXXXXXXXYSRIP-------YG--------EEEEMKKWVATRGPL--SVGMNAN 436
                             P       YG         E+++   +   GP+  +  + ++
Sbjct: 126 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 185
Query: 437 GLFYYSGGVIDLNQRLYG------------TSIPYWIVKNSWGSDWGE 472
            L Y SG    +   + G               PYW+V NSW +DWG+
Sbjct: 186 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGD 233

>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum Length = 265

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 28/142 (19%)
Query: 520 RMDDALQYIIDNGGVVSDQAYP-------YKASESERGCLXXXXXXXXXXXXXYSRIPYG 572
           +++D    + DNG ++ ++  P       Y A ESER                + +I   
Sbjct: 111 KVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYESER---------FHDNMDAFVKI--- 158
Query: 573 EEEEMKKWVATRGPLSVGMNANGL--FYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEK 630
               +K  V  +G +   + A  +  + +SG  +   Q LC     +HA+ IVGYG    
Sbjct: 159 ----IKTEVMNKGSVIAYIKAENVMGYEFSGKKV---QNLCGDDTADHAVNIVGYGNYVN 211
Query: 631 KDGTSIPYWIVKNSWGSDWGEK 652
            +G    YWIV+NSWG  WG++
Sbjct: 212 SEGEKKSYWIVRNSWGPYWGDE 233

>pdb|1MIR|A Chain A, Rat Procathepsin B Length = 322

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 81/229 (35%), Gaps = 52/229 (22%)
Query: 295 DLPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSL--TELSVQQL 348
           +LPE+FD    W     I+++++QG C   WAF AV  +     I  N     E+S + L
Sbjct: 62  NLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 121
Query: 349 VDCD--MSNGGCNGGRMDDALQYIIDNGGVVSDQAY-------PYKASESERGC------ 393
           + C       GCNGG    A  +     G+VS   Y       PY     E         
Sbjct: 122 LTCCGIQCGDGCNGGYPSGAWNFWTRK-GLVSGGVYNSHIGCLPYTIPPCEHHVNGARPP 180
Query: 394 -------------LXXXXXXXXXXXXXYSRIPYG---EEEEMKKWVATRGPLSVGMNA-- 435
                                      Y    Y     E+E+   +   GP+        
Sbjct: 181 CTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFS 240
Query: 436 ------NGLFYYSGGVIDLNQ--RLYGTSI----PYWIVKNSWGSDWGE 472
                 +G++ +  G +      R+ G  I    PYW+V NSW +DWG+
Sbjct: 241 DFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGD 289

>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added To An Endopeptidase Framework Creates The Machine For Activation Of Granular Serine Proteases Length = 69

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Query: 612 NP-KAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE 651
           NP +  NHA+++VGYG +     + + YWIVKNSWG+ WGE
Sbjct: 4   NPFELTNHAVLLVGYGTDS---ASGMDYWIVKNSWGTGWGE 41

>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum With Loop 690-700 Ordered Length = 265

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 28/142 (19%)
Query: 520 RMDDALQYIIDNGGVVSDQAYP-------YKASESERGCLXXXXXXXXXXXXXYSRIPYG 572
           +++D    + DNG ++ ++  P       Y A ESER                + +I   
Sbjct: 112 KVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYESER---------FHDNMDAFVKI--- 159
Query: 573 EEEEMKKWVATRGPLSVGMNANGL--FYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEK 630
               +K  V  +G +   + A  +  + +SG  +   + LC     +HA+ IVGYG    
Sbjct: 160 ----IKTEVMNKGSVIAYIKAENVMGYEFSGKKV---KNLCGDDTADHAVNIVGYGNYVN 212
Query: 631 KDGTSIPYWIVKNSWGSDWGEK 652
            +G    YWIV+NSWG  WG++
Sbjct: 213 SEGEKKSYWIVRNSWGPYWGDE 234

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	655
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	1e-81
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	2e-50
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	4e-28
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	8e-76
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	8e-44
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	1e-29
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	4e-75
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	3e-46
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	4e-27
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	3e-74
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	7e-42
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	5e-28
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	6e-73
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	9e-54
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	4e-18
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	1e-72
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	2e-42
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	1e-26
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	3e-72
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	7e-50
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	1e-18
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	3e-72
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	1e-43
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	3e-26
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	2e-71
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	1e-48
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	2e-19
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	2e-71
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	2e-43
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	2e-26
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	1e-70
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	5e-48
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	5e-19
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	3e-70
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	6e-49
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	2e-17
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	3e-70
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	6e-43
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	6e-26
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	5e-70
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	3e-44
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	1e-18
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	1e-69
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	3e-46
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	2e-18
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	2e-69
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	1e-43
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	1e-18
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	2e-69
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	1e-44
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	7e-20
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	4e-69
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	3e-44
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	6e-18
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	5e-68
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	2e-49
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	1e-15
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	1e-67
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	2e-47
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	3e-17
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	1e-67
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	2e-44
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	1e-18
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	1e-67
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	8e-44
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	2e-18
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	5e-67
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	2e-44
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	2e-19
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	7e-67
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	5e-43
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	6e-19
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	1e-66
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	4e-43
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	3e-18
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	2e-66
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	2e-44
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	1e-17
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	2e-66
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	1e-43
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	8e-18
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	9e-66
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	8e-42
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	1e-18
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	1e-65
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	2e-39
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	2e-18
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	8e-64
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	3e-44
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	5e-17
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	3e-63
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	3e-44
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	8e-17
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	5e-60
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	2e-43
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	5e-16
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	5e-56
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	7e-37
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	8e-16
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	2e-52
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	2e-38
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	1e-11
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	5e-52
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	3e-36
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	1e-14
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	8e-51
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	3e-30
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	1e-17
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	7e-50
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	1e-34
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	1e-13
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	4e-49
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	2e-33
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	2e-13
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	2e-48
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	2e-36
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	2e-10
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	4e-09
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	6e-05
3f75_P	106	Toxopain-2, cathepsin L propeptide; medical struct	9e-09
3f75_P	106	Toxopain-2, cathepsin L propeptide; medical struct	5e-07
2l95_A	80	Crammer, LP06209P; cysteine proteinase inhibitor,	3e-05
2l95_A	80	Crammer, LP06209P; cysteine proteinase inhibitor,	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331

 Score =  260 bits (666), Expect = 1e-81
 Identities = 89/317 (28%), Positives = 145/317 (45%), Gaps = 43/317 (13%)

Query: 185 HAIQGNNLTELSVQH--------HDKVYSSVEDLLRRHENFVTNVEKAEDYQSE-DSGTA 235
           H ++G+ L    V          + + Y + ++   R + F   +E  E++  +   G  
Sbjct: 6   HHLEGSALPSTFVAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLV 65

Query: 236 VF--GVNKFFDLSESDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHG 293
            +  GVN F D++  +++  T              L  P   ++    ++  +   L   
Sbjct: 66  SYTLGVNLFTDMTPEEMKAYTH------------GLIMPADLHKNGIPIKTREDLGLNAS 113

Query: 294 DDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTE--LSVQQLVDC 351
              P +FDWR +G++S VK QG C   WAFS+ G +E+   I   +  +  +S QQLVDC
Sbjct: 114 VRYPASFDWRDQGMVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDC 173

Query: 352 DMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRI 411
             +  GC+GG M+DA  Y+  NGG+ S+ AYPY+ ++    C   +      ++  Y  +
Sbjct: 174 VPNALGCSGGWMNDAFTYVAQNGGIDSEGAYPYEMADGN--CHY-DPNQVAARLSGYVYL 230

Query: 412 PYGEEEEMKKWVATRGPLSVGMNANGLF-YYSGGVID----LNQRL--------YGTS-- 456
              +E  +   VAT+GP++V  +A+  F  YSGGV         +         YG    
Sbjct: 231 SGPDENMLADMVATKGPVAVAFDADDPFGSYSGGVYYNPTCETNKFTHAVLIVGYGNENG 290

Query: 457 IPYWIVKNSWGSDWGEK 473
             YW+VKNSWG  WG  
Sbjct: 291 QDYWLVKNSWGDGWGLD 307

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331

 Score =  177 bits (451), Expect = 2e-50
 Identities = 56/148 (37%), Positives = 80/148 (54%), Gaps = 11/148 (7%)

Query: 506 LVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKE 565
           LVDC  +  GC+GG M+DA  Y+  NGG+ S+ AYPY+ ++    C   +      ++  
Sbjct: 170 LVDCVPNALGCSGGWMNDAFTYVAQNGGIDSEGAYPYEMADGN--CHY-DPNQVAARLSG 226

Query: 566 YSRIPYGEEEEMKKWVATRGPLSVGMNANGLF-YYSGGVIDLNQRLCNPKAQNHALIIVG 624
           Y  +   +E  +   VAT+GP++V  +A+  F  YSGGV       C      HA++IVG
Sbjct: 227 YVYLSGPDENMLADMVATKGPVAVAFDADDPFGSYSGGV--YYNPTCETNKFTHAVLIVG 284

Query: 625 YGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           YG E  +D     YW+VKNSWG  WG  
Sbjct: 285 YGNENGQD-----YWLVKNSWGDGWGLD 307

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331

 Score =  114 bits (288), Expect = 4e-28
 Identities = 37/161 (22%), Positives = 69/161 (42%), Gaps = 17/161 (10%)

Query: 43  TRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQRE-DSGTAVFE--VNKFFDLSD 99
            ++ NF   + + Y + ++   R + F   +E  E++  +   G   +   VN F D++ 
Sbjct: 20  EKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDMTP 79

Query: 100 SDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGV 159
            +++  T              L  P   ++    ++  +   L      P +FDWR +G+
Sbjct: 80  EEMKAYTH------------GLIMPADLHKNGIPIKTREDLGLNASVRYPASFDWRDQGM 127

Query: 160 ISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTE--LSVQ 198
           +S VK QG C   WAFS+ G +E+   I      +  +S Q
Sbjct: 128 VSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQ 168

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312

 Score =  244 bits (625), Expect = 8e-76
 Identities = 68/295 (23%), Positives = 116/295 (39%), Gaps = 47/295 (15%)

Query: 198 QHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQL-TGL 256
           +  +K Y++ ED     +NF+ +V+  +             +N   DLS  + +      
Sbjct: 13  KAFNKSYATFEDEEAARKNFLESVKYVQSNGG--------AINHLSDLSLDEFKNRFLMS 64

Query: 257 NLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGK 316
                    Q  L A              + N+     + P   D R    ++ ++ QG 
Sbjct: 65  AEAFEHLKTQFDLNA--------------ETNACSINGNAPAEIDLRQMRTVTPIRMQGG 110

Query: 317 CACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGV 376
           C   WAFS V   E+ +    +   +L+ Q+LVDC  S  GC+G  +   ++YI  N GV
Sbjct: 111 CGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCA-SQHGCHGDTIPRGIEYIQHN-GV 168

Query: 377 VSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVA-TRGPLSVGMNA 435
           V +  Y Y A E    C     +     +  Y +I      ++++ +A T   ++V +  
Sbjct: 169 VQESYYRYVAREQS--CRRPNAQR--FGISNYCQIYPPNANKIREALAQTHSAIAVIIGI 224

Query: 436 NGLF---YYSGGVIDL----NQRL--------YGTS--IPYWIVKNSWGSDWGEK 473
             L    +Y G  I       Q          Y  +  + YWIV+NSW ++WG+ 
Sbjct: 225 KDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDN 279

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312

 Score =  158 bits (402), Expect = 8e-44
 Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 21/166 (12%)

Query: 491 TGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERG 550
                     LA ++LVDC  S  GC+G  +   ++YI  NG VV +  Y Y A E    
Sbjct: 131 RDQSLD----LAEQELVDCA-SQHGCHGDTIPRGIEYIQHNG-VVQESYYRYVAREQS-- 182

Query: 551 CLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVA-TRGPLSVGMNANGLF---YYSGGVIDL 606
           C     +     +  Y +I      ++++ +A T   ++V +    L    +Y G  I  
Sbjct: 183 CRRPNAQR--FGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTII- 239

Query: 607 NQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
            QR    +   HA+ IVGY   +  D     YWIV+NSW ++WG+ 
Sbjct: 240 -QRDNGYQPNYHAVNIVGYSNAQGVD-----YWIVRNSWDTNWGDN 279

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312

 Score =  118 bits (298), Expect = 1e-29
 Identities = 31/160 (19%), Positives = 57/160 (35%), Gaps = 23/160 (14%)

Query: 40  SPVTRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSGTAVFEVNKFFDLSD 99
           S +  F  + +  +K Y++ ED     +NF+ +V+  +             +N   DLS 
Sbjct: 3   SSIKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGGA--------INHLSDLSL 54

Query: 100 SDLQQL-TGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEG 158
            + +               Q  L A              + N+     + P   D R   
Sbjct: 55  DEFKNRFLMSAEAFEHLKTQFDLNA--------------ETNACSINGNAPAEIDLRQMR 100

Query: 159 VISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
            ++ ++ QG C   WAFS V   E+ +    +   +L+ Q
Sbjct: 101 TVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQ 140

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314

 Score =  242 bits (620), Expect = 4e-75
 Identities = 91/295 (30%), Positives = 136/295 (46%), Gaps = 41/295 (13%)

Query: 199 HHDKVYSSVEDLLRRHENFVTNVEKAEDYQSE-DSGTAVF--GVNKFFDLSESDLQQ-LT 254
            H K Y++  D + R   +  N++    +  E   G   +   +N   D++  ++ Q +T
Sbjct: 17  THRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMT 76

Query: 255 GLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQ 314
           GL +  +      +L  P                        P++ D+R +G ++ VK Q
Sbjct: 77  GLKVPLSHSRSNDTLYIP------------------EWEGRAPDSVDYRKKGYVTPVKNQ 118

Query: 315 GKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNG 374
           G+C  CWAFS+VG +E     +   L  LS Q LVDC   N GC GG M +A QY+  N 
Sbjct: 119 GQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNR 178

Query: 375 GVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMN 434
           G+ S+ AYPY   E    C+     G   K + Y  IP G E+ +K+ VA  GP+SV ++
Sbjct: 179 GIDSEDAYPYVGQEES--CMY-NPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAID 235

Query: 435 ANG--LFYYSGGVID----LNQRL--------YGTS--IPYWIVKNSWGSDWGEK 473
           A+     +YS GV       +  L        YG      +WI+KNSWG +WG K
Sbjct: 236 ASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNK 290

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314

 Score =  165 bits (420), Expect = 3e-46
 Identities = 64/164 (39%), Positives = 88/164 (53%), Gaps = 16/164 (9%)

Query: 491 TGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERG 550
           TG L +    L+ + LVDC   N GC GG M +A QY+  N G+ S+ AYPY   E    
Sbjct: 141 TGKLLN----LSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES-- 194

Query: 551 CLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVIDLNQ 608
           C+     G   K + Y  IP G E+ +K+ VA  GP+SV ++A+     +YS GV     
Sbjct: 195 CMY-NPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYY--D 251

Query: 609 RLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
             CN    NHA++ VGYG ++        +WI+KNSWG +WG K
Sbjct: 252 ESCNSDNLNHAVLAVGYGIQKGNK-----HWIIKNSWGENWGNK 290

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314

 Score =  111 bits (279), Expect = 4e-27
 Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 22/160 (13%)

Query: 43  TRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDY-QREDSGTAVFE--VNKFFDLSD 99
           T +  + + H K Y++  D + R   +  N++    +      G   +E  +N   D++ 
Sbjct: 9   THWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTS 68

Query: 100 SDLQQ-LTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEG 158
            ++ Q +TGL +  +      +L  P                        P++ D+R +G
Sbjct: 69  EEVVQKMTGLKVPLSHSRSNDTLYIP------------------EWEGRAPDSVDYRKKG 110

Query: 159 VISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
            ++ VK QG+C  CWAFS+VG +E     +   L  LS Q
Sbjct: 111 YVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQ 150

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322

 Score =  240 bits (615), Expect = 3e-74
 Identities = 91/290 (31%), Positives = 141/290 (48%), Gaps = 38/290 (13%)

Query: 199 HHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESD-LQQLTGLN 257
           +H+K Y +V++ L R E F  N+   ++   +++   + G+N+F DLS  +  ++  G  
Sbjct: 28  NHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWL-GLNEFADLSNDEFNEKYVGSL 86

Query: 258 LDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKC 317
           +D+T+E                               +LPE  DWR +G ++ V+ QG C
Sbjct: 87  IDATIEQSYDEEFIN------------------EDIVNLPENVDWRKKGAVTPVRHQGSC 128

Query: 318 ACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVV 377
             CWAFSAV  VE ++ I+   L ELS Q+LVDC+  + GC GG    AL+Y+  N G+ 
Sbjct: 129 GSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKN-GIH 187

Query: 378 SDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG 437
               YPYKA +    C   +  G  VK     R+    E  +   +A   P+SV + + G
Sbjct: 188 LRSKYPYKAKQGT--CRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVESKG 244

Query: 438 L-F-YYSGGVID------LNQRL----YGTS--IPYWIVKNSWGSDWGEK 473
             F  Y GG+ +      ++  +    YG S    Y ++KNSWG+ WGEK
Sbjct: 245 RPFQLYKGGIFEGPCGTKVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEK 294

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322

 Score =  153 bits (389), Expect = 7e-42
 Identities = 54/158 (34%), Positives = 78/158 (49%), Gaps = 15/158 (9%)

Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEE 556
           KL  L+ ++LVDC+  + GC GG    AL+Y+  N G+     YPYKA +    C   + 
Sbjct: 150 KLVELSEQELVDCERRSHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGT--CRAKQV 206

Query: 557 EGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGL-F-YYSGGVIDLNQRLCNPK 614
            G  VK     R+    E  +   +A   P+SV + + G  F  Y GG+ +     C  K
Sbjct: 207 GGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEGP---CGTK 262

Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
             + A+  VGYG+   K      Y ++KNSWG+ WGEK
Sbjct: 263 V-DGAVTAVGYGKSGGKG-----YILIKNSWGTAWGEK 294

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322

 Score =  113 bits (286), Expect = 5e-28
 Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 20/157 (12%)

Query: 43  TRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSGTAVFEVNKFFDLSDSD- 101
             F ++M +H+K Y +V++ L R E F  N+   ++  ++++   +  +N+F DLS+ + 
Sbjct: 20  QLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWL-GLNEFADLSNDEF 78

Query: 102 LQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVIS 161
            ++  G  +D+T+E                               +LPE  DWR +G ++
Sbjct: 79  NEKYVGSLIDATIEQSYDEEFIN------------------EDIVNLPENVDWRKKGAVT 120

Query: 162 KVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
            V+ QG C  CWAFSAV  VE ++ I+   L ELS Q
Sbjct: 121 PVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQ 157

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Length = 214

 Score =  233 bits (596), Expect = 6e-73
 Identities = 68/193 (35%), Positives = 104/193 (53%), Gaps = 20/193 (10%)

Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P  +DWR++G ++KVK+QG C  CWAFS  G VE    +   +L  LS Q+L+DCD  + 
Sbjct: 2   PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDK 61

Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEE 416
            C GG   +A   I + GG+ ++  Y Y+       C    E+  KV +++   +    E
Sbjct: 62  ACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQS--CQFSAEKA-KVYIQDSVELS-QNE 117

Query: 417 EEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRL--------------YGTS--IPYW 460
           +++  W+A RGP+SV +NA G+ +Y  G+    + L              YG    +P+W
Sbjct: 118 QKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFW 177

Query: 461 IVKNSWGSDWGEK 473
            +KNSWG+DWGEK
Sbjct: 178 AIKNSWGTDWGEK 190

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Length = 214

 Score =  182 bits (464), Expect = 9e-54
 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 13/162 (8%)

Query: 491 TGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERG 550
            G L S    L+ ++L+DCD  +  C GG   +A   I + GG+ ++  Y Y+       
Sbjct: 42  QGTLLS----LSEQELLDCDKMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQS-- 95

Query: 551 CLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRL 610
           C    E+  KV +++   +    E+++  W+A RGP+SV +NA G+ +Y  G+    + L
Sbjct: 96  CQFSAEKA-KVYIQDSVELS-QNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPL 153

Query: 611 CNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           C+P   +HA+++VGYG+          +W +KNSWG+DWGEK
Sbjct: 154 CSPWLIDHAVLLVGYGQRSDVP-----FWAIKNSWGTDWGEK 190

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Length = 214

 Score = 82.5 bits (205), Expect = 4e-18
 Identities = 23/50 (46%), Positives = 30/50 (60%)

Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
           P  +DWR++G ++KVK+QG C  CWAFS  G VE    +    L  LS Q
Sbjct: 2   PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQ 51

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315

 Score =  235 bits (603), Expect = 1e-72
 Identities = 97/297 (32%), Positives = 141/297 (47%), Gaps = 45/297 (15%)

Query: 199 HHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAV---FGVNKFFDLSESDLQQL-T 254
            + K Y    +   R   +  N++    +  E S        G+N   D++  ++  L +
Sbjct: 18  TYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVMSLMS 77

Query: 255 GLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQ 314
            L + S     Q      + SN                   LP++ DWR +G +++VK Q
Sbjct: 78  SLRVPS-----QWQRNITYKSN---------------PNRILPDSVDWREKGCVTEVKYQ 117

Query: 315 GKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS---NGGCNGGRMDDALQYII 371
           G C   WAFSAVG +EA   ++   L  LS Q LVDC      N GCNGG M  A QYII
Sbjct: 118 GSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYII 177

Query: 372 DNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSV 431
           DN G+ SD +YPYKA + +  C   + +       +Y+ +PYG E+ +K+ VA +GP+SV
Sbjct: 178 DNKGIDSDASYPYKAMDQK--CQY-DSKYRAATCSKYTELPYGREDVLKEAVANKGPVSV 234

Query: 432 GMNANGL-F-YYSGGVIDL---NQRL--------YGTS--IPYWIVKNSWGSDWGEK 473
           G++A    F  Y  GV       Q +        YG      YW+VKNSWG ++GE+
Sbjct: 235 GVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEE 291

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315

 Score =  155 bits (393), Expect = 2e-42
 Identities = 68/167 (40%), Positives = 96/167 (57%), Gaps = 20/167 (11%)

Query: 491 TGVLPSKLSRLATEKLVDCDMS---NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASES 547
           TG L S    L+ + LVDC      N GCNGG M  A QYIIDN G+ SD +YPYKA + 
Sbjct: 140 TGKLVS----LSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ 195

Query: 548 ERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGL-F-YYSGGVID 605
           +  C   + +       +Y+ +PYG E+ +K+ VA +GP+SVG++A    F  Y  GV  
Sbjct: 196 K--CQY-DSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV-- 250

Query: 606 LNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
             +  C     NH +++VGYG+   K+     YW+VKNSWG ++GE+
Sbjct: 251 YYEPSCTQN-VNHGVLVVGYGDLNGKE-----YWLVKNSWGHNFGEE 291

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315

 Score =  110 bits (276), Expect = 1e-26
 Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 24/160 (15%)

Query: 43  TRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQRE-DSGTAVFE--VNKFFDLSD 99
             +  + + + K Y    +   R   +  N++    +  E   G   ++  +N   D++ 
Sbjct: 10  HHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTS 69

Query: 100 SDLQQL-TGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEG 158
            ++  L + L + S     Q      + SN                   LP++ DWR +G
Sbjct: 70  EEVMSLMSSLRVPS-----QWQRNITYKSN---------------PNRILPDSVDWREKG 109

Query: 159 VISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
            +++VK QG C   WAFSAVG +EA   ++   L  LS Q
Sbjct: 110 CVTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQ 149

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Length = 246

 Score =  232 bits (594), Expect = 3e-72
 Identities = 68/198 (34%), Positives = 103/198 (52%), Gaps = 20/198 (10%)

Query: 295 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS 354
           D PE++DW  +GVI+KVK QG+C   WAFSA G +EA HAI   +L  LS Q+L+DC   
Sbjct: 1   DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDE 60

Query: 355 NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASE----SERGCLVGEEEGFKVKVKEYSR 410
           + GC  G    + ++++ +GG+ S+  YPYKA +    +         + + V++     
Sbjct: 61  SEGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKCKANEIQDKVTIDNYGVQILSNES 120

Query: 411 IPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVID-----LNQRL--------YGTS- 456
                E  ++ +V    P+SV ++A    +YSGG+ D         +        YG+  
Sbjct: 121 TESEAESSLQSFVLE-QPISVSIDAKDFHFYSGGIYDGGNCSSPYGINHFVLIVGYGSED 179

Query: 457 -IPYWIVKNSWGSDWGEK 473
            + YWI KNSWG DWG  
Sbjct: 180 GVDYWIAKNSWGEDWGID 197

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Length = 246

 Score =  173 bits (440), Expect = 7e-50
 Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 15/166 (9%)

Query: 491 TGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASE---- 546
           TG L S    L+ ++L+DC   + GC  G    + ++++ +GG+ S+  YPYKA +    
Sbjct: 43  TGNLVS----LSEQELIDCVDESEGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKCK 98

Query: 547 SERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDL 606
           +         + + V++          E  ++ +V    P+SV ++A    +YSGG+ D 
Sbjct: 99  ANEIQDKVTIDNYGVQILSNESTESEAESSLQSFVLE-QPISVSIDAKDFHFYSGGIYD- 156

Query: 607 NQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
                +P   NH ++IVGYG E+  D     YWI KNSWG DWG  
Sbjct: 157 GGNCSSPYGINHFVLIVGYGSEDGVD-----YWIAKNSWGEDWGID 197

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Length = 246

 Score = 85.0 bits (211), Expect = 1e-18
 Identities = 30/52 (57%), Positives = 36/52 (69%)

Query: 147 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
           D PE++DW  +GVI+KVK QG+C   WAFSA G +EA HAI   NL  LS Q
Sbjct: 1   DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQ 52

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310

 Score =  234 bits (600), Expect = 3e-72
 Identities = 81/295 (27%), Positives = 130/295 (44%), Gaps = 43/295 (14%)

Query: 199 HHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAV---FGVNKFFDLSESDLQQLTG 255
            ++K Y+  +D  RR   +  NV+  +++        V    G+N+F D++  + +    
Sbjct: 11  MYNKEYNGADDQHRR-NIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKAKYL 69

Query: 256 LNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQG 315
                             +     +++ +       +   +P+  DWR  G +++VK+QG
Sbjct: 70  ------------------TEMSRASDILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQG 111

Query: 316 KCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS--NGGCNGGRMDDALQYIIDN 373
            C   WAFS  G +E  +     +    S QQLVDC     N GC GG M++A QY +  
Sbjct: 112 NCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQY-LKQ 170

Query: 374 GGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGM 433
            G+ ++ +YPY A E +  C   ++ G   KV  +  +  G E E+K  V   GP +V +
Sbjct: 171 FGLETESSYPYTAVEGQ--CRYNKQLG-VAKVTGFYTVHSGSEVELKNLVGAEGPAAVAV 227

Query: 434 NANGLF-YYSGGVID----LNQRL--------YGTS--IPYWIVKNSWGSDWGEK 473
           +    F  Y  G+         R+        YGT     YWIVKNSWG  WGE+
Sbjct: 228 DVESDFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGER 282

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310

 Score =  158 bits (401), Expect = 1e-43
 Identities = 59/166 (35%), Positives = 83/166 (50%), Gaps = 20/166 (12%)

Query: 491 TGVLPSKLSRLATEK-LVDCDMS--NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASES 547
                S  S    E+ LVDC     N GC GG M++A QY+    G+ ++ +YPY A E 
Sbjct: 133 ERTSIS-FS----EQQLVDCSRPWGNNGCGGGLMENAYQYL-KQFGLETESSYPYTAVEG 186

Query: 548 ERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLF-YYSGGVIDL 606
           +  C   ++ G   KV  +  +  G E E+K  V   GP +V ++    F  Y  G+   
Sbjct: 187 Q--CRYNKQLG-VAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGIYQ- 242

Query: 607 NQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
             + C+P   NHA++ VGYG +   D     YWIVKNSWG  WGE+
Sbjct: 243 -SQTCSPLRVNHAVLAVGYGTQGGTD-----YWIVKNSWGLSWGER 282

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310

 Score =  108 bits (272), Expect = 3e-26
 Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 22/159 (13%)

Query: 43  TRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQRE-DSGTAVFE--VNKFFDLSD 99
             +  + R ++K Y+  +D  RR   +  NV+  +++    D G   +   +N+F D++ 
Sbjct: 3   DLWHQWKRMYNKEYNGADDQHRR-NIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTF 61

Query: 100 SDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGV 159
            + +                      +     +++ +       +   +P+  DWR  G 
Sbjct: 62  EEFKAKYL------------------TEMSRASDILSHGVPYEANNRAVPDKIDWRESGY 103

Query: 160 ISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
           +++VK+QG C   WAFS  G +E  +          S Q
Sbjct: 104 VTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQ 142

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Length = 243

 Score =  230 bits (589), Expect = 2e-71
 Identities = 71/206 (34%), Positives = 103/206 (50%), Gaps = 28/206 (13%)

Query: 291 RHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVD 350
                   A+DWR  G ++ VK+Q  C  CWAFS+VG VE+ +AI+  +L   S Q+LVD
Sbjct: 15  ADAKLDRIAYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVD 74

Query: 351 CDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSR 410
           C + N GC GG + +A   +ID GG+ S   YPY ++  E  C +      +  +K Y  
Sbjct: 75  CSVKNNGCYGGYITNAFDDMIDLGGLCSQDDYPYVSNLPET-CNLKRCNE-RYTIKSYVS 132

Query: 411 IPYGEEEEMKKWVATRGPLSVGMNANGLF-YYSGGVIDLN--QRL--------YGTS--- 456
           IP   +++ K+ +   GP+S+ + A+  F +Y GG  D               YG     
Sbjct: 133 IP---DDKFKEALRYLGPISISIAASDDFAFYRGGFYDGECGAAPNHAVILVGYGMKDIY 189

Query: 457 ---------IPYWIVKNSWGSDWGEK 473
                      Y+I+KNSWGSDWGE 
Sbjct: 190 NEDTGRMEKFYYYIIKNSWGSDWGEG 215

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Length = 243

 Score =  169 bits (431), Expect = 1e-48
 Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 19/168 (11%)

Query: 491 TGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERG 550
              L       + ++LVDC + N GC GG + +A   +ID GG+ S   YPY ++  E  
Sbjct: 61  KKALFL----FSEQELVDCSVKNNGCYGGYITNAFDDMIDLGGLCSQDDYPYVSNLPET- 115

Query: 551 CLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLF-YYSGGVIDLNQR 609
           C +      +  +K Y  IP   +++ K+ +   GP+S+ + A+  F +Y GG  D    
Sbjct: 116 CNLKRCNE-RYTIKSYVSIP---DDKFKEALRYLGPISISIAASDDFAFYRGGFYDGE-- 169

Query: 610 LCNPKAQNHALIIVGYGEEEKKDGTS-----IPYWIVKNSWGSDWGEK 652
            C     NHA+I+VGYG ++  +  +       Y+I+KNSWGSDWGE 
Sbjct: 170 -CGAA-PNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEG 215

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Length = 243

 Score = 86.9 bits (216), Expect = 2e-19
 Identities = 23/56 (41%), Positives = 31/56 (55%)

Query: 143 RHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
                   A+DWR  G ++ VK+Q  C  CWAFS+VG VE+ +AI+   L   S Q
Sbjct: 15  ADAKLDRIAYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQ 70

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329

 Score =  233 bits (596), Expect = 2e-71
 Identities = 91/295 (30%), Positives = 133/295 (45%), Gaps = 42/295 (14%)

Query: 199 HHDKVYSSVEDLLRRHENFVTNVEKAEDYQSE-DSGTAVF--GVNKFFDLSESDLQQLTG 255
            H K YSS  + +RR   F  NV K  ++ ++ + G   +   +N+F D+S+ +      
Sbjct: 33  THKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSKEEFLAYVN 92

Query: 256 LNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQG 315
                                Q        +   +     L  + DWR+  V S+VK+QG
Sbjct: 93  -----------------RGKAQKPKHPENLRMPYVSSKKPLAASVDWRSNAV-SEVKDQG 134

Query: 316 KCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS--NGGCNGGRMDDALQYIIDN 373
           +C   W+FS  G VE   A+Q   LT LS Q L+DC  S  N GC+GG MD A  YI  +
Sbjct: 135 QCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYIH-D 193

Query: 374 GGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGM 433
            G++S+ AYPY+A      C   +       +  Y  +P G+E  +   V   GP++V +
Sbjct: 194 YGIMSESAYPYEAQGDY--CRF-DSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAI 250

Query: 434 NANGLF-YYSGGVIDL----NQRL--------YGTS--IPYWIVKNSWGSDWGEK 473
           +A     +YSGG+          L        YG+     YWI+KNSWGS WGE 
Sbjct: 251 DATDELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGES 305

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329

 Score =  157 bits (400), Expect = 2e-43
 Identities = 62/166 (37%), Positives = 88/166 (53%), Gaps = 20/166 (12%)

Query: 491 TGVLPSKLSRLATEK-LVDCDMS--NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASES 547
            G L S LS    E+ L+DC  S  N GC+GG MD A  YI  + G++S+ AYPY+A   
Sbjct: 156 RGRLTS-LS----EQNLIDCSSSYGNAGCDGGWMDSAFSYIH-DYGIMSESAYPYEAQGD 209

Query: 548 ERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLF-YYSGGVIDL 606
              C   +       +  Y  +P G+E  +   V   GP++V ++A     +YSGG+   
Sbjct: 210 Y--CRF-DSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGL--F 264

Query: 607 NQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
             + CN    NH +++VGYG +  +D     YWI+KNSWGS WGE 
Sbjct: 265 YDQTCNQSDLNHGVLVVGYGSDNGQD-----YWILKNSWGSGWGES 305

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329

 Score =  109 bits (274), Expect = 2e-26
 Identities = 42/159 (26%), Positives = 64/159 (40%), Gaps = 21/159 (13%)

Query: 43  TRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDY-QREDSGTAVFE--VNKFFDLSD 99
            ++  F   H K YSS  + +RR   F  NV K  ++  + + G   +   +N+F D+S 
Sbjct: 25  EQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSK 84

Query: 100 SDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGV 159
            +                           Q        +   +     L  + DWR+  V
Sbjct: 85  EEFLAYVN-----------------RGKAQKPKHPENLRMPYVSSKKPLAASVDWRSNAV 127

Query: 160 ISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
            S+VK+QG+C   W+FS  G VE   A+Q   LT LS Q
Sbjct: 128 -SEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQ 165

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Length = 241

 Score =  228 bits (583), Expect = 1e-70
 Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 28/204 (13%)

Query: 293 GDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCD 352
            +    A+DWR    ++ VK+Q  C  CWAFS++G VE+ +AI+ N L  LS Q+LVDC 
Sbjct: 15  ENFDHAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCS 74

Query: 353 MSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIP 412
             N GCNGG +++A + +I+ GG+  D  YPY +          +    K  +K Y  +P
Sbjct: 75  FKNYGCNGGLINNAFEDMIELGGICPDGDYPYVS--DAPNLCNIDRCTEKYGIKNYLSVP 132

Query: 413 YGEEEEMKKWVATRGPLSVGMNANGLF-YYSGGVIDLN--QRL--------YGTS----- 456
              + ++K+ +   GP+S+ +  +  F +Y  G+ D     +L        +G       
Sbjct: 133 ---DNKLKEALRFLGPISISVAVSDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNP 189

Query: 457 -------IPYWIVKNSWGSDWGEK 473
                    Y+I+KNSWG  WGE+
Sbjct: 190 LTKKGEKHYYYIIKNSWGQQWGER 213

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Length = 241

 Score =  167 bits (426), Expect = 5e-48
 Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 15/153 (9%)

Query: 506 LVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKE 565
           LVDC   N GCNGG +++A + +I+ GG+  D  YPY +          +    K  +K 
Sbjct: 70  LVDCSFKNYGCNGGLINNAFEDMIELGGICPDGDYPYVS--DAPNLCNIDRCTEKYGIKN 127

Query: 566 YSRIPYGEEEEMKKWVATRGPLSVGMNANGLF-YYSGGVIDLNQRLCNPKAQNHALIIVG 624
           Y  +P   + ++K+ +   GP+S+ +  +  F +Y  G+ D     C  +  NHA+++VG
Sbjct: 128 YLSVP---DNKLKEALRFLGPISISVAVSDDFAFYKEGIFDGE---CGDQL-NHAVMLVG 180

Query: 625 YGEEE-----KKDGTSIPYWIVKNSWGSDWGEK 652
           +G +E      K G    Y+I+KNSWG  WGE+
Sbjct: 181 FGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGER 213

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Length = 241

 Score = 85.7 bits (213), Expect = 5e-19
 Identities = 23/54 (42%), Positives = 33/54 (61%)

Query: 145 GDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
            +    A+DWR    ++ VK+Q  C  CWAFS++G VE+ +AI+ N L  LS Q
Sbjct: 15  ENFDHAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQ 68

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Length = 215

 Score =  226 bits (578), Expect = 3e-70
 Identities = 71/191 (37%), Positives = 112/191 (58%), Gaps = 15/191 (7%)

Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P A DWRA G ++ VK+QG+C  CWAFSA+G VE    + G+ LT LS Q LV CD ++ 
Sbjct: 2   PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61

Query: 357 GCNGGRMDDALQYII--DNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYG 414
           GC+GG M++A ++I+  +NG V ++ +YPY + E                +  +  +P  
Sbjct: 62  GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121

Query: 415 EEEEMKKWVATRGPLSVGMNANGLFYYSGGVID--LNQRL--------YGTS--IPYWIV 462
            E ++  W+A  GP++V ++A+    Y+GGV+   ++++L        Y  S  +PYWI+
Sbjct: 122 -EAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVGYNDSAAVPYWII 180

Query: 463 KNSWGSDWGEK 473
           KNSW + WGE+
Sbjct: 181 KNSWTTQWGEE 191

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Length = 215

 Score =  169 bits (431), Expect = 6e-49
 Identities = 47/164 (28%), Positives = 85/164 (51%), Gaps = 16/164 (9%)

Query: 491 TGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYII--DNGGVVSDQAYPYKASESE 548
              L +    L+ + LV CD ++ GC+GG M++A ++I+  +NG V ++ +YPY + E  
Sbjct: 42  GHPLTN----LSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGI 97

Query: 549 RGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQ 608
                         +  +  +P   E ++  W+A  GP++V ++A+    Y+GGV+    
Sbjct: 98  SPPCTTSGHTVGATITGHVELPQD-EAQIAAWLAVNGPVAVAVDASSWMTYTGGVMT--- 153

Query: 609 RLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
             C  +  +H +++VGY +          YWI+KNSW + WGE+
Sbjct: 154 -SCVSEQLDHGVLLVGYNDSAAVP-----YWIIKNSWTTQWGEE 191

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Length = 215

 Score = 80.6 bits (200), Expect = 2e-17
 Identities = 27/50 (54%), Positives = 34/50 (68%)

Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
           P A DWRA G ++ VK+QG+C  CWAFSA+G VE    + G+ LT LS Q
Sbjct: 2   PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQ 51

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316

 Score =  229 bits (587), Expect = 3e-70
 Identities = 91/301 (30%), Positives = 138/301 (45%), Gaps = 52/301 (17%)

Query: 199 HHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAV---FGVNKFFDLSESDLQQL-T 254
            H+++Y   E+  RR   +  N++  E +  E           +N F D++  + +Q+  
Sbjct: 18  MHNRLYGMNEEGWRR-AVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMN 76

Query: 255 GLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQ 314
           G                    N+   + + FQ        + P + DWR +G ++ VK Q
Sbjct: 77  GFQ------------------NRKPRKGKVFQE---PLFYEAPRSVDWREKGYVTPVKNQ 115

Query: 315 GKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG--GCNGGRMDDALQYIID 372
           G+C  CWAFSA G +E     +   L  LS Q LVDC    G  GCNGG MD A QY+ D
Sbjct: 116 GQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQD 175

Query: 373 NGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVG 432
           NGG+ S+++YPY+A+E    C    +         +  IP  +E+ + K VAT GP+SV 
Sbjct: 176 NGGLDSEESYPYEATEES--CKYNPKYS-VANDAGFVDIP-KQEKALMKAVATVGPISVA 231

Query: 433 MNANGL-F-YYSGGVID----LNQRL--------YGTSI------PYWIVKNSWGSDWGE 472
           ++A    F +Y  G+       ++ +        YG          YW+VKNSWG +WG 
Sbjct: 232 IDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGM 291

Query: 473 K 473
            
Sbjct: 292 G 292

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316

 Score =  156 bits (396), Expect = 6e-43
 Identities = 65/167 (38%), Positives = 94/167 (56%), Gaps = 17/167 (10%)

Query: 491 TGVLPSKLSRLATEK-LVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASES 547
           TG L S LS    E+ LVDC    G  GCNGG MD A QY+ DNGG+ S+++YPY+A+E 
Sbjct: 138 TGRLIS-LS----EQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE 192

Query: 548 ERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGL-F-YYSGGVID 605
              C    +         +  IP  +E+ + K VAT GP+SV ++A    F +Y  G+  
Sbjct: 193 S--CKYNPKYS-VANDAGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF 248

Query: 606 LNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
             +  C+ +  +H +++VGYG E  +   +  YW+VKNSWG +WG  
Sbjct: 249 --EPDCSSEDMDHGVLVVGYGFESTESDNN-KYWLVKNSWGEEWGMG 292

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316

 Score =  107 bits (270), Expect = 6e-26
 Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 26/160 (16%)

Query: 43  TRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQRE-DSGTAVFE--VNKFFDLSD 99
            ++  +   H+++Y   E+  RR   +  N++  E + +E   G   F   +N F D++ 
Sbjct: 10  AQWTKWKAMHNRLYGMNEEGWRR-AVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTS 68

Query: 100 SDLQQL-TGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEG 158
            + +Q+  G                    N+   + + FQ        + P + DWR +G
Sbjct: 69  EEFRQVMNGFQ------------------NRKPRKGKVFQE---PLFYEAPRSVDWREKG 107

Query: 159 VISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
            ++ VK QG+C  CWAFSA G +E     +   L  LS Q
Sbjct: 108 YVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQ 147

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} Length = 213

 Score =  225 bits (576), Expect = 5e-70
 Identities = 66/190 (34%), Positives = 99/190 (52%), Gaps = 18/190 (9%)

Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           +P + DWR +G ++ V+ QG C  CW FS+V  VE ++ I    L  LS Q+L+DC+  +
Sbjct: 1   IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRS 60

Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGE 415
            GC GG    ALQY+  N G+   Q YPY+  + +  C   + +G KVK     R+P   
Sbjct: 61  YGCRGGFPLYALQYVA-NSGIHLRQYYPYEGVQRQ--CRASQAKGPKVKTDGVGRVPRNN 117

Query: 416 EEEMKKWVATRGPLSVGMNANGL-F-YYSGGVIDL--NQRL--------YGTSIPYWIVK 463
           E+ + + +A   P+S+ + A G  F  Y GG+        +        YG    Y ++K
Sbjct: 118 EQALIQRIA-IQPVSIVVEAKGRAFQNYRGGIFAGPCGTSIDHAVAAVGYGN--DYILIK 174

Query: 464 NSWGSDWGEK 473
           NSWG+ WGE 
Sbjct: 175 NSWGTGWGEG 184

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} Length = 213

 Score =  156 bits (397), Expect = 3e-44
 Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 19/149 (12%)

Query: 506 LVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKE 565
           L+DC+  + GC GG    ALQY+  N G+   Q YPY+  + +  C   + +G KVK   
Sbjct: 53  LLDCERRSYGCRGGFPLYALQYVA-NSGIHLRQYYPYEGVQRQ--CRASQAKGPKVKTDG 109

Query: 566 YSRIPYGEEEEMKKWVATRGPLSVGMNANGL-F-YYSGGVIDLNQRLCNPKAQNHALIIV 623
             R+P   E+ + + +A   P+S+ + A G  F  Y GG+       C     +HA+  V
Sbjct: 110 VGRVPRNNEQALIQRIA-IQPVSIVVEAKGRAFQNYRGGIFAGP---CGTSI-DHAVAAV 164

Query: 624 GYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           GYG +         Y ++KNSWG+ WGE 
Sbjct: 165 GYGND---------YILIKNSWGTGWGEG 184

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} Length = 213

 Score = 84.0 bits (209), Expect = 1e-18
 Identities = 21/51 (41%), Positives = 30/51 (58%)

Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
           +P + DWR +G ++ V+ QG C  CW FS+V  VE ++ I    L  LS Q
Sbjct: 1   IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQ 51

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Length = 216

 Score =  224 bits (574), Expect = 1e-69
 Identities = 72/192 (37%), Positives = 100/192 (52%), Gaps = 18/192 (9%)

Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           LPE  DWR +G ++ V+ QG C  CWAFSAV  VE ++ I+   L ELS Q+LVDC+  +
Sbjct: 1   LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60

Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGE 415
            GC GG    AL+Y+  N G+     YPYKA +    C   +  G  VK     R+    
Sbjct: 61  HGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGT--CRAKQVGGPIVKTSGVGRVQPNN 117

Query: 416 EEEMKKWVATRGPLSVGMNANGL-F-YYSGGVIDL--NQRL--------YGTS--IPYWI 461
           E  +   +A   P+SV + + G  F  Y GG+ +     ++        YG S    Y +
Sbjct: 118 EGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGKGYIL 176

Query: 462 VKNSWGSDWGEK 473
           +KNSWG+ WGEK
Sbjct: 177 IKNSWGTAWGEK 188

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Length = 216

 Score =  161 bits (411), Expect = 3e-46
 Identities = 56/164 (34%), Positives = 80/164 (48%), Gaps = 19/164 (11%)

Query: 491 TGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERG 550
           TG L      L+ ++LVDC+  + GC GG    AL+Y+  N G+     YPYKA +    
Sbjct: 42  TGKLVE----LSEQELVDCERRSHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGT-- 94

Query: 551 CLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGL-F-YYSGGVIDLNQ 608
           C   +  G  VK     R+    E  +   +A   P+SV + + G  F  Y GG+ +   
Sbjct: 95  CRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEGP- 152

Query: 609 RLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
             C  K  +HA+  VGYG+   K      Y ++KNSWG+ WGEK
Sbjct: 153 --CGTKV-DHAVTAVGYGKSGGKG-----YILIKNSWGTAWGEK 188

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Length = 216

 Score = 83.3 bits (207), Expect = 2e-18
 Identities = 26/51 (50%), Positives = 33/51 (64%)

Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
           LPE  DWR +G ++ V+ QG C  CWAFSAV  VE ++ I+   L ELS Q
Sbjct: 1   LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQ 51

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Length = 212

 Score =  224 bits (573), Expect = 2e-69
 Identities = 64/190 (33%), Positives = 94/190 (49%), Gaps = 18/190 (9%)

Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           +PE  DWR +G ++ VK QG C  CWAFSAV  +E +  I+  +L + S Q+L+DCD  +
Sbjct: 1   IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60

Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGE 415
            GCNGG    ALQ +    G+     YPY+  +    C   E+  +  K     ++    
Sbjct: 61  YGCNGGYPWSALQLVA-QYGIHYRNTYPYEGVQRY--CRSREKGPYAAKTDGVRQVQPYN 117

Query: 416 EEEMKKWVATRGPLSVGMNANGL-F-YYSGGVIDL--NQRL--------YGTSIPYWIVK 463
           E  +   +A   P+SV + A G  F  Y GG+       ++        YG    Y ++K
Sbjct: 118 EGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGP--NYILIK 174

Query: 464 NSWGSDWGEK 473
           NSWG+ WGE 
Sbjct: 175 NSWGTGWGEN 184

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Length = 212

 Score =  154 bits (392), Expect = 1e-43
 Identities = 47/149 (31%), Positives = 67/149 (44%), Gaps = 19/149 (12%)

Query: 506 LVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKE 565
           L+DCD  + GCNGG    ALQ +    G+     YPY+  +    C   E+  +  K   
Sbjct: 53  LLDCDRRSYGCNGGYPWSALQLVA-QYGIHYRNTYPYEGVQRY--CRSREKGPYAAKTDG 109

Query: 566 YSRIPYGEEEEMKKWVATRGPLSVGMNANGL-F-YYSGGVIDLNQRLCNPKAQNHALIIV 623
             ++    E  +   +A   P+SV + A G  F  Y GG+       C  K  +HA+  V
Sbjct: 110 VRQVQPYNEGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIFVGP---CGNKV-DHAVAAV 164

Query: 624 GYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           GYG           Y ++KNSWG+ WGE 
Sbjct: 165 GYGPN---------YILIKNSWGTGWGEN 184

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Length = 212

 Score = 84.0 bits (209), Expect = 1e-18
 Identities = 24/51 (47%), Positives = 32/51 (62%)

Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
           +PE  DWR +G ++ VK QG C  CWAFSAV  +E +  I+  NL + S Q
Sbjct: 1   IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQ 51

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Length = 221

 Score =  224 bits (573), Expect = 2e-69
 Identities = 78/194 (40%), Positives = 104/194 (53%), Gaps = 18/194 (9%)

Query: 294 DDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM 353
           DDLP++ DWR  G +  VK QG C  CWAFS V  VE ++ I    L  LS QQLVDC  
Sbjct: 1   DDLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTT 60

Query: 354 SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPY 413
           +N GC GG M+ A Q+I++NGG+ S++ YPY+  +    C         V +  Y  +P 
Sbjct: 61  ANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGI--CNSTVNAP-VVSIDSYENVPS 117

Query: 414 GEEEEMKKWVATRGPLSVGMNANGL-F-YYSGGVIDLN--QRL--------YGTS--IPY 459
             E+ ++K VA   P+SV M+A G  F  Y  G+   +             YGT     +
Sbjct: 118 HNEQSLQKAVAN-QPVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYGTENDKDF 176

Query: 460 WIVKNSWGSDWGEK 473
           WIVKNSWG +WGE 
Sbjct: 177 WIVKNSWGKNWGES 190

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Length = 221

 Score =  157 bits (400), Expect = 1e-44
 Identities = 62/149 (41%), Positives = 84/149 (56%), Gaps = 15/149 (10%)

Query: 506 LVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKE 565
           LVDC  +N GC GG M+ A Q+I++NGG+ S++ YPY+  +    C         V +  
Sbjct: 55  LVDCTTANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGI--CNSTVNAP-VVSIDS 111

Query: 566 YSRIPYGEEEEMKKWVATRGPLSVGMNANGL-F-YYSGGVIDLNQRLCNPKAQNHALIIV 623
           Y  +P   E+ ++K VA   P+SV M+A G  F  Y  G+   +   CN  A NHAL +V
Sbjct: 112 YENVPSHNEQSLQKAVAN-QPVSVTMDAAGRDFQLYRSGIFTGS---CNISA-NHALTVV 166

Query: 624 GYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           GYG E  KD     +WIVKNSWG +WGE 
Sbjct: 167 GYGTENDKD-----FWIVKNSWGKNWGES 190

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Length = 221

 Score = 87.6 bits (218), Expect = 7e-20
 Identities = 26/53 (49%), Positives = 32/53 (60%)

Query: 146 DDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
           DDLP++ DWR  G +  VK QG C  CWAFS V  VE ++ I   +L  LS Q
Sbjct: 1   DDLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQ 53

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Length = 214

 Score =  223 bits (570), Expect = 4e-69
 Identities = 67/189 (35%), Positives = 105/189 (55%), Gaps = 18/189 (9%)

Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           PE+ DWR +G ++ VK Q  C  CWAFS V  +E ++ I    L  LS Q+L+DC+  + 
Sbjct: 2   PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSH 61

Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEE 416
           GC+GG    +LQY++DN GV +++ YPY+  +    C   +++G KV +  Y  +P  +E
Sbjct: 62  GCDGGYQTTSLQYVVDN-GVHTEREYPYEKKQGR--CRAKDKKGPKVYITGYKYVPANDE 118

Query: 417 EEMKKWVATRGPLSVGMNANGL-F-YYSGGVID--LNQRL--------YGTSIPYWIVKN 464
             + + +A   P+SV  ++ G  F +Y GG+ +               YG    Y ++KN
Sbjct: 119 ISLIQAIAN-QPVSVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVTAVGYGK--TYLLLKN 175

Query: 465 SWGSDWGEK 473
           SWG +WGEK
Sbjct: 176 SWGPNWGEK 184

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Length = 214

 Score =  156 bits (398), Expect = 3e-44
 Identities = 50/149 (33%), Positives = 83/149 (55%), Gaps = 19/149 (12%)

Query: 506 LVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKE 565
           L+DC+  + GC+GG    +LQY++DN GV +++ YPY+  +    C   +++G KV +  
Sbjct: 53  LLDCERRSHGCDGGYQTTSLQYVVDN-GVHTEREYPYEKKQGR--CRAKDKKGPKVYITG 109

Query: 566 YSRIPYGEEEEMKKWVATRGPLSVGMNANGL-F-YYSGGVIDLNQRLCNPKAQNHALIIV 623
           Y  +P  +E  + + +A   P+SV  ++ G  F +Y GG+ +     C     +HA+  V
Sbjct: 110 YKYVPANDEISLIQAIAN-QPVSVVTDSRGRGFQFYKGGIYEGP---CGTN-TDHAVTAV 164

Query: 624 GYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           GYG+          Y ++KNSWG +WGEK
Sbjct: 165 GYGKT---------YLLLKNSWGPNWGEK 184

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Length = 214

 Score = 82.1 bits (204), Expect = 6e-18
 Identities = 22/50 (44%), Positives = 29/50 (58%)

Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
           PE+ DWR +G ++ VK Q  C  CWAFS V  +E ++ I    L  LS Q
Sbjct: 2   PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQ 51

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Length = 220

 Score =  220 bits (563), Expect = 5e-68
 Identities = 69/197 (35%), Positives = 92/197 (46%), Gaps = 23/197 (11%)

Query: 297 PEAFDWRAEG-VISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS- 354
           P + DWR +G  +S VK QG C  CW FS  G +E+  AI    +  L+ QQLVDC  + 
Sbjct: 2   PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61

Query: 355 -NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPY 413
            N GC GG    A +YI  N G++ +  YPYK  +    C    ++     VK+ + I  
Sbjct: 62  NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDH--CKFQPDKA-IAFVKDVANITM 118

Query: 414 GEEEEMKKWVATRGPLSVGMNANGLF-YYSGGVID------LNQRL--------YGTS-- 456
            +EE M + VA   P+S        F  Y  G+           ++        YG    
Sbjct: 119 NDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENG 178

Query: 457 IPYWIVKNSWGSDWGEK 473
           IPYWIVKNSWG  WG  
Sbjct: 179 IPYWIVKNSWGPQWGMN 195

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Length = 220

 Score =  170 bits (434), Expect = 2e-49
 Identities = 58/166 (34%), Positives = 77/166 (46%), Gaps = 17/166 (10%)

Query: 491 TGVLPSKLSRLATEK-LVDCDMS--NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASES 547
           TG + S L+    E+ LVDC  +  N GC GG    A +YI  N G++ +  YPYK  + 
Sbjct: 43  TGKMLS-LA----EQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDD 97

Query: 548 ERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLF-YYSGGVIDL 606
              C    ++     VK+ + I   +EE M + VA   P+S        F  Y  G+   
Sbjct: 98  H--CKFQPDKA-IAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSS 154

Query: 607 NQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
                 P   NHA++ VGYGEE         YWIVKNSWG  WG  
Sbjct: 155 TSCHKTPDKVNHAVLAVGYGEENGIP-----YWIVKNSWGPQWGMN 195

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Length = 220

 Score = 75.2 bits (186), Expect = 1e-15
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 149 PEAFDWRAEG-VISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
           P + DWR +G  +S VK QG C  CW FS  G +E+  AI    +  L+ Q
Sbjct: 2   PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQ 52

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Length = 215

 Score =  219 bits (561), Expect = 1e-67
 Identities = 74/193 (38%), Positives = 102/193 (52%), Gaps = 19/193 (9%)

Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P++ D+R +G ++ VK QG+C  CWAFS+VG +E     +   L  LS Q LVDC   N 
Sbjct: 2   PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61

Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEE 416
           GC GG M +A QY+  N G+ S+ AYPY   E    C+         K + Y  IP G E
Sbjct: 62  GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES--CMYNPTGK-AAKCRGYREIPEGNE 118

Query: 417 EEMKKWVATRGPLSVGMNANG--LFYYSGGVID----LNQRL--------YGTS--IPYW 460
           + +K+ VA  GP+SV ++A+     +YS GV       +  L        YG      +W
Sbjct: 119 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 178

Query: 461 IVKNSWGSDWGEK 473
           I+KNSWG +WG K
Sbjct: 179 IIKNSWGENWGNK 191

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Length = 215

 Score =  165 bits (420), Expect = 2e-47
 Identities = 64/165 (38%), Positives = 87/165 (52%), Gaps = 18/165 (10%)

Query: 491 TGVLPSKLSRLATEK-LVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESER 549
           TG L + LS     + LVDC   N GC GG M +A QY+  N G+ S+ AYPY   E   
Sbjct: 42  TGKLLN-LS----PQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES- 95

Query: 550 GCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVIDLN 607
            C+         K + Y  IP G E+ +K+ VA  GP+SV ++A+     +YS GV    
Sbjct: 96  -CMYNPTGK-AAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV--YY 151

Query: 608 QRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
              CN    NHA++ VGYG ++        +WI+KNSWG +WG K
Sbjct: 152 DESCNSDNLNHAVLAVGYGIQKGNK-----HWIIKNSWGENWGNK 191

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Length = 215

 Score = 79.8 bits (198), Expect = 3e-17
 Identities = 21/50 (42%), Positives = 31/50 (62%)

Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
           P++ D+R +G ++ VK QG+C  CWAFS+VG +E     +   L  LS Q
Sbjct: 2   PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQ 51

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Length = 229

 Score =  219 bits (561), Expect = 1e-67
 Identities = 79/194 (40%), Positives = 111/194 (57%), Gaps = 19/194 (9%)

Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS- 354
           +P + DWR +G ++ VK+QG+C  CWAFS +  VE ++ I+ N L  LS Q+LVDCD   
Sbjct: 2   VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61

Query: 355 NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYG 414
           N GCNGG MD A ++I   GG+ ++  YPY+A +    C V +E    V +  +  +P  
Sbjct: 62  NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGT--CDVSKENAPAVSIDGHENVPEN 119

Query: 415 EEEEMKKWVATRGPLSVGMNANGL-F-YYSGGVIDLN--QRL--------YGTS---IPY 459
           +E  + K VA   P+SV ++A G  F +YS GV   +    L        YGT+     Y
Sbjct: 120 DENALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKY 178

Query: 460 WIVKNSWGSDWGEK 473
           W VKNSWG +WGEK
Sbjct: 179 WTVKNSWGPEWGEK 192

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Length = 229

 Score =  157 bits (399), Expect = 2e-44
 Identities = 62/150 (41%), Positives = 84/150 (56%), Gaps = 14/150 (9%)

Query: 506 LVDCDMS-NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVK 564
           LVDCD   N GCNGG MD A ++I   GG+ ++  YPY+A +    C V +E    V + 
Sbjct: 54  LVDCDTDQNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGT--CDVSKENAPAVSID 111

Query: 565 EYSRIPYGEEEEMKKWVATRGPLSVGMNANGL-F-YYSGGVIDLNQRLCNPKAQNHALII 622
            +  +P  +E  + K VA   P+SV ++A G  F +YS GV   +   C  +  +H + I
Sbjct: 112 GHENVPENDENALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFTGS---CGTE-LDHGVAI 166

Query: 623 VGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           VGYG     DGT   YW VKNSWG +WGEK
Sbjct: 167 VGYGTTI--DGT--KYWTVKNSWGPEWGEK 192

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Length = 229

 Score = 84.1 bits (209), Expect = 1e-18
 Identities = 23/51 (45%), Positives = 34/51 (66%)

Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
           +P + DWR +G ++ VK+QG+C  CWAFS +  VE ++ I+ N L  LS Q
Sbjct: 2   VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQ 52

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Length = 215

 Score =  219 bits (560), Expect = 1e-67
 Identities = 76/192 (39%), Positives = 108/192 (56%), Gaps = 19/192 (9%)

Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           LP   DWR++G ++ +K Q +C  CWAFSAV  VE+++ I+   L  LS Q+LVDCD ++
Sbjct: 1   LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60

Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGE 415
            GCNGG M++A QYII NGG+ + Q YPY A +    C         V +  + R+    
Sbjct: 61  HGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGS--CKPYRLRV--VSINGFQRVTRNN 116

Query: 416 EEEMKKWVATRGPLSVGMNANGL-F-YYSGGVID------LNQRL----YGTS--IPYWI 461
           E  ++  VA+  P+SV + A G  F +YS G+         N  +    YGT     YWI
Sbjct: 117 ESALQSAVAS-QPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGTQSGKNYWI 175

Query: 462 VKNSWGSDWGEK 473
           V+NSWG +WG +
Sbjct: 176 VRNSWGQNWGNQ 187

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Length = 215

 Score =  155 bits (394), Expect = 8e-44
 Identities = 60/149 (40%), Positives = 84/149 (56%), Gaps = 16/149 (10%)

Query: 506 LVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKE 565
           LVDCD ++ GCNGG M++A QYII NGG+ + Q YPY A +    C         V +  
Sbjct: 53  LVDCDTASHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGS--CKPYRLRV--VSING 108

Query: 566 YSRIPYGEEEEMKKWVATRGPLSVGMNANGL-F-YYSGGVIDLNQRLCNPKAQNHALIIV 623
           + R+    E  ++  VA+  P+SV + A G  F +YS G+       C   AQNH ++IV
Sbjct: 109 FQRVTRNNESALQSAVAS-QPVSVTVEAAGAPFQHYSSGIFTGP---CG-TAQNHGVVIV 163

Query: 624 GYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           GYG +  K+     YWIV+NSWG +WG +
Sbjct: 164 GYGTQSGKN-----YWIVRNSWGQNWGNQ 187

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Length = 215

 Score = 83.7 bits (208), Expect = 2e-18
 Identities = 23/51 (45%), Positives = 33/51 (64%)

Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
           LP   DWR++G ++ +K Q +C  CWAFSAV  VE+++ I+   L  LS Q
Sbjct: 1   LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQ 51

>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A* Length = 222

 Score =  157 bits (400), Expect = 2e-44
 Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 21/166 (12%)

Query: 491 TGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERG 550
                     LA ++LVDC  S  GC+G  +   ++YI  NG VV +  Y Y A E    
Sbjct: 51  RQQSLD----LAEQELVDCA-SQHGCHGDTIPRGIEYIQHNG-VVQESYYRYVAREQS-- 102

Query: 551 CLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVA-TRGPLSVGMNANGLF---YYSGGVIDL 606
           C     +     +  Y +I      ++++ +A T   ++V +    L    +Y G  I  
Sbjct: 103 CRRPNAQR--FGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTII- 159

Query: 607 NQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
            QR    +   HA+ IVGY   +  D     YWIV+NSW ++WG+ 
Sbjct: 160 -QRDNGYQPNYHAVNIVGYSNAQGVD-----YWIVRNSWDTNWGDN 199

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Length = 262

 Score =  219 bits (559), Expect = 7e-67
 Identities = 80/196 (40%), Positives = 113/196 (57%), Gaps = 18/196 (9%)

Query: 295 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS 354
           DLP + DWR +G ++ VK+QGKC  CWAFS V  VE ++AI+  SL  LS Q+L+DCD +
Sbjct: 3   DLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTA 62

Query: 355 -NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESE-RGCLVGEEEGFKVKVKEYSRIP 412
            N GC GG MD+A +YI +NGG++++ AYPY+A+          +     V +  +  +P
Sbjct: 63  DNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDVP 122

Query: 413 YGEEEEMKKWVATRGPLSVGMNANGL-F-YYSGGVIDL--NQRL--------YGTS---I 457
              EE++ + VA   P+SV + A+G  F +YS GV        L        YG +    
Sbjct: 123 ANSEEDLARAVAN-QPVSVAVEASGKAFMFYSEGVFTGECGTELDHGVAVVGYGVAEDGK 181

Query: 458 PYWIVKNSWGSDWGEK 473
            YW VKNSWG  WGE+
Sbjct: 182 AYWTVKNSWGPSWGEQ 197

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Length = 262

 Score =  154 bits (392), Expect = 5e-43
 Identities = 58/151 (38%), Positives = 85/151 (56%), Gaps = 13/151 (8%)

Query: 506 LVDCDMS-NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESE-RGCLVGEEEGFKVKV 563
           L+DCD + N GC GG MD+A +YI +NGG++++ AYPY+A+          +     V +
Sbjct: 56  LIDCDTADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHI 115

Query: 564 KEYSRIPYGEEEEMKKWVATRGPLSVGMNANGL-F-YYSGGVIDLNQRLCNPKAQNHALI 621
             +  +P   EE++ + VA   P+SV + A+G  F +YS GV       C  +  +H + 
Sbjct: 116 DGHQDVPANSEEDLARAVAN-QPVSVAVEASGKAFMFYSEGVFTGE---CGTE-LDHGVA 170

Query: 622 IVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           +VGYG  E  DG    YW VKNSWG  WGE+
Sbjct: 171 VVGYGVAE--DGK--AYWTVKNSWGPSWGEQ 197

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Length = 262

 Score = 86.2 bits (214), Expect = 6e-19
 Identities = 27/52 (51%), Positives = 36/52 (69%)

Query: 147 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
           DLP + DWR +G ++ VK+QGKC  CWAFS V  VE ++AI+  +L  LS Q
Sbjct: 3   DLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQ 54

>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A Length = 220

 Score =  153 bits (390), Expect = 4e-43
 Identities = 60/151 (39%), Positives = 83/151 (54%), Gaps = 16/151 (10%)

Query: 506 LVDCDMS--NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKV 563
           LVDC  +    GC+GG M D  Q+II+NGG+ ++  YPY A E +  C +  ++   V +
Sbjct: 53  LVDCGRTQNTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQ--CNLDLQQEKYVSI 110

Query: 564 KEYSRIPYGEEEEMKKWVATRGPLSVGMNANGL-F-YYSGGVIDLNQRLCNPKAQNHALI 621
             Y  +PY  E  ++  VA   P+SV + A G  F +YS G+       C     +HA+ 
Sbjct: 111 DTYENVPYNNEWALQTAVA-YQPVSVALEAAGYNFQHYSSGIFTGP---CGTAV-DHAVT 165

Query: 622 IVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           IVGYG E   D     YWIVKNSWG+ WGE+
Sbjct: 166 IVGYGTEGGID-----YWIVKNSWGTTWGEE 191

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Length = 218

 Score =  216 bits (553), Expect = 2e-66
 Identities = 83/196 (42%), Positives = 112/196 (57%), Gaps = 21/196 (10%)

Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS- 354
           LP++ DWR +G +++VK QG C  CWAFSAVG +EA   ++   L  LS Q LVDC    
Sbjct: 2   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61

Query: 355 --NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIP 412
             N GCNGG M  A QYIIDN G+ SD +YPYKA + +  C    +        +Y+ +P
Sbjct: 62  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK--CQYDSKYR-AATCSKYTELP 118

Query: 413 YGEEEEMKKWVATRGPLSVGMNANGL-F-YYSGGVIDL---NQRL--------YGTS--I 457
           YG E+ +K+ VA +GP+SVG++A    F  Y  GV       Q +        YG     
Sbjct: 119 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 178

Query: 458 PYWIVKNSWGSDWGEK 473
            YW+VKNSWG ++GE+
Sbjct: 179 EYWLVKNSWGHNFGEE 194

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Length = 218

 Score =  157 bits (399), Expect = 2e-44
 Identities = 69/168 (41%), Positives = 95/168 (56%), Gaps = 22/168 (13%)

Query: 491 TGVLPSKLSRLATEK-LVDCDMS---NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASE 546
           TG L S LS     + LVDC      N GCNGG M  A QYIIDN G+ SD +YPYKA +
Sbjct: 43  TGKLVS-LS----AQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD 97

Query: 547 SERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGL-F-YYSGGVI 604
            +  C    +        +Y+ +PYG E+ +K+ VA +GP+SVG++A    F  Y  GV 
Sbjct: 98  QK--CQYDSKYR-AATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV- 153

Query: 605 DLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
              +  C     NH +++VGYG+   K+     YW+VKNSWG ++GE+
Sbjct: 154 -YYEPSCTQNV-NHGVLVVGYGDLNGKE-----YWLVKNSWGHNFGEE 194

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Length = 218

 Score = 81.4 bits (202), Expect = 1e-17
 Identities = 25/51 (49%), Positives = 34/51 (66%)

Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
           LP++ DWR +G +++VK QG C  CWAFSAVG +EA   ++   L  LS Q
Sbjct: 2   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQ 52

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Length = 218

 Score =  216 bits (552), Expect = 2e-66
 Identities = 80/191 (41%), Positives = 107/191 (56%), Gaps = 18/191 (9%)

Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P++ DWRA+G ++ VK QG C  CWAFS +  VE ++ I   +L ELS Q+LVDCD  + 
Sbjct: 2   PQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61

Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEE 416
           GC GG    +LQY+  N GV + + YPY+A + +  C   ++ G KVK+  Y R+P   E
Sbjct: 62  GCKGGYQTTSLQYVA-NNGVHTSKVYPYQAKQYK--CRATDKPGPKVKITGYKRVPSNCE 118

Query: 417 EEMKKWVATRGPLSVGMNANGL-F-YYSGGVIDL--NQRL--------YGTS--IPYWIV 462
                 +A   PLSV + A G  F  Y  GV D     +L        YGTS    Y I+
Sbjct: 119 TSFLGALAN-QPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTSDGKNYIII 177

Query: 463 KNSWGSDWGEK 473
           KNSWG +WGEK
Sbjct: 178 KNSWGPNWGEK 188

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Length = 218

 Score =  155 bits (394), Expect = 1e-43
 Identities = 60/149 (40%), Positives = 80/149 (53%), Gaps = 15/149 (10%)

Query: 506 LVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKE 565
           LVDCD  + GC GG    +LQY+  N GV + + YPY+A + +  C   ++ G KVK+  
Sbjct: 53  LVDCDKHSYGCKGGYQTTSLQYVA-NNGVHTSKVYPYQAKQYK--CRATDKPGPKVKITG 109

Query: 566 YSRIPYGEEEEMKKWVATRGPLSVGMNANGL-F-YYSGGVIDLNQRLCNPKAQNHALIIV 623
           Y R+P   E      +A   PLSV + A G  F  Y  GV D     C  K  +HA+  V
Sbjct: 110 YKRVPSNCETSFLGALAN-QPLSVLVEAGGKPFQLYKSGVFDGP---CGTKL-DHAVTAV 164

Query: 624 GYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           GYG  + K+     Y I+KNSWG +WGEK
Sbjct: 165 GYGTSDGKN-----YIIIKNSWGPNWGEK 188

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Length = 218

 Score = 81.8 bits (203), Expect = 8e-18
 Identities = 25/50 (50%), Positives = 33/50 (66%)

Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
           P++ DWRA+G ++ VK QG C  CWAFS +  VE ++ I   NL ELS Q
Sbjct: 2   PQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQ 51

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 224

 Score =  214 bits (548), Expect = 9e-66
 Identities = 74/198 (37%), Positives = 106/198 (53%), Gaps = 22/198 (11%)

Query: 294 DDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM 353
            +LP   DWR+ G ++ VK+Q  C  CWAFS  G +E  H  +   L  LS Q+L+DC  
Sbjct: 5   SELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSR 64

Query: 354 SNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRI 411
           + G   C+GG M+DA QY++D+GG+ S+ AYPY A + E  C     E   VK+  +  +
Sbjct: 65  AEGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEE--CRAQSCEK-VVKILGFKDV 121

Query: 412 PYGEEEEMKKWVATRGPLSVGMNANGL-F-YYSGGVIDLN--QRL--------YGTS--- 456
           P   E  MK  +A   P+S+ + A+ + F +Y  GV D +    L        YGT    
Sbjct: 122 PRRSEAAMKAALAK-SPVSIAIEADQMPFQFYHEGVFDASCGTDLDHGVLLVGYGTDKES 180

Query: 457 -IPYWIVKNSWGSDWGEK 473
              +WI+KNSWG+ WG  
Sbjct: 181 KKDFWIMKNSWGTGWGRD 198

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 224

 Score =  150 bits (380), Expect = 8e-42
 Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 19/166 (11%)

Query: 491 TGVLPSKLSRLATEKLVDCDMSNG--GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESE 548
           TG L S    L+ ++L+DC  + G   C+GG M+DA QY++D+GG+ S+ AYPY A + E
Sbjct: 48  TGKLVS----LSEQELMDCSRAEGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEE 103

Query: 549 RGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGL-F-YYSGGVIDL 606
             C     E   VK+  +  +P   E  MK  +A   P+S+ + A+ + F +Y  GV D 
Sbjct: 104 --CRAQSCEK-VVKILGFKDVPRRSEAAMKAALAK-SPVSIAIEADQMPFQFYHEGVFDA 159

Query: 607 NQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           +   C     +H +++VGYG +++       +WI+KNSWG+ WG  
Sbjct: 160 S---CGTDL-DHGVLLVGYGTDKES---KKDFWIMKNSWGTGWGRD 198

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 224

 Score = 84.1 bits (209), Expect = 1e-18
 Identities = 22/53 (41%), Positives = 29/53 (54%)

Query: 146 DDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
            +LP   DWR+ G ++ VK+Q  C  CWAFS  G +E  H  +   L  LS Q
Sbjct: 5   SELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQ 57

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Length = 208

 Score =  213 bits (545), Expect = 1e-65
 Identities = 75/188 (39%), Positives = 105/188 (55%), Gaps = 16/188 (8%)

Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           LPE  DWR +G ++ VK QG C  CWAFS V  VE+++ I+  +L  LS Q+LVDCD  N
Sbjct: 1   LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKN 60

Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGE 415
            GC GG    A QYII+NGG+ +   YPYKA +    C    +    V +  Y+ +P+  
Sbjct: 61  HGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGP--CQAASK---VVSIDGYNGVPFCN 115

Query: 416 EEEMKKWVATRGPLSVGMNANGLFY--YSGGV--------IDLNQRLYGTSIPYWIVKNS 465
           E  +K+ VA   P +V ++A+   +  YS G+        ++    + G    YWIV+NS
Sbjct: 116 EXALKQAVA-VQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGYQANYWIVRNS 174

Query: 466 WGSDWGEK 473
           WG  WGEK
Sbjct: 175 WGRYWGEK 182

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Length = 208

 Score =  142 bits (361), Expect = 2e-39
 Identities = 60/164 (36%), Positives = 82/164 (50%), Gaps = 25/164 (15%)

Query: 491 TGVLPSKLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERG 550
           TG L S    L+ ++LVDCD  N GC GG    A QYII+NGG+ +   YPYKA +    
Sbjct: 42  TGNLIS----LSEQELVDCDKKNHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGP-- 95

Query: 551 CLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQ 608
           C    +    V +  Y+ +P+  E  +K+ VA   P +V ++A+   +  YS G+     
Sbjct: 96  CQAASK---VVSIDGYNGVPFCNEXALKQAVA-VQPSTVAIDASSAQFQQYSSGIFS--- 148

Query: 609 RLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
                   NH + IVGY            YWIV+NSWG  WGEK
Sbjct: 149 -GPCGTKLNHGVTIVGYQAN---------YWIVRNSWGRYWGEK 182

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Length = 208

 Score = 83.5 bits (207), Expect = 2e-18
 Identities = 26/51 (50%), Positives = 33/51 (64%)

Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
           LPE  DWR +G ++ VK QG C  CWAFS V  VE+++ I+  NL  LS Q
Sbjct: 1   LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQ 51

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Length = 220

 Score =  209 bits (534), Expect = 8e-64
 Identities = 74/199 (37%), Positives = 103/199 (51%), Gaps = 26/199 (13%)

Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS-- 354
           P + DWR +G ++ VK QG+C  CWAFSA G +E     +   L  LS Q LVDC     
Sbjct: 2   PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61

Query: 355 NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYG 414
           N GCNGG MD A QY+ DNGG+ S+++YPY+A+E    C    +         +  IP  
Sbjct: 62  NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES--CKYNPKYS-VANDTGFVDIP-K 117

Query: 415 EEEEMKKWVATRGPLSVGMNANGLF--YYSGGVID----LNQRL--------YGTS---- 456
           +E+ + K VAT GP+SV ++A      +Y  G+       ++ +        YG      
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 177

Query: 457 --IPYWIVKNSWGSDWGEK 473
               YW+VKNSWG +WG  
Sbjct: 178 DNNKYWLVKNSWGEEWGMG 196

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Length = 220

 Score =  156 bits (397), Expect = 3e-44
 Identities = 64/167 (38%), Positives = 93/167 (55%), Gaps = 17/167 (10%)

Query: 491 TGVLPSKLSRLATEK-LVDCDMS--NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASES 547
           TG L S LS    E+ LVDC     N GCNGG MD A QY+ DNGG+ S+++YPY+A+E 
Sbjct: 42  TGRLIS-LS----EQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE 96

Query: 548 ERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLF--YYSGGVID 605
              C    +         +  IP  +E+ + K VAT GP+SV ++A      +Y  G+  
Sbjct: 97  S--CKYNPKYS-VANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGI-- 150

Query: 606 LNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
             +  C+ +  +H +++VGYG E  +   +  YW+VKNSWG +WG  
Sbjct: 151 YFEPDCSSEDMDHGVLVVGYGFESTESDNN-KYWLVKNSWGEEWGMG 196

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Length = 220

 Score = 79.5 bits (197), Expect = 5e-17
 Identities = 22/50 (44%), Positives = 29/50 (58%)

Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
           P + DWR +G ++ VK QG+C  CWAFSA G +E     +   L  LS Q
Sbjct: 2   PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQ 51

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441

 Score =  215 bits (549), Expect = 3e-63
 Identities = 62/306 (20%), Positives = 113/306 (36%), Gaps = 50/306 (16%)

Query: 199 HHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLTGLNL 258
           + +  +         +  +  +    +   +           ++  L+  D+ + +G   
Sbjct: 126 YVNTAHLKNSQEKYSNRLYKYDHNFVKAINAIQKSWTATTYMEYETLTLGDMIRRSG--- 182

Query: 259 DSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWR---AEGVISKVKEQG 315
                          S      +         +    LP ++DWR       +S V+ Q 
Sbjct: 183 -------------GHSRKIPRPKPAPLTAEIQQKILFLPTSWDWRNVHGINFVSPVRNQA 229

Query: 316 KCACCWAFSAVGVVEAMHAIQGNSLT--ELSVQQLVDCDMSNGGCNGGRMDDALQYIIDN 373
            C  C++F+++G++EA   I  N+     LS Q++V C     GC GG           +
Sbjct: 230 SCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQD 289

Query: 374 GGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIP----YGEEEEMKKWVATRGPL 429
            G+V +  +PY  ++S   C + +E+ F+    EY  +        E  MK  +   GP+
Sbjct: 290 FGLVEEACFPYTGTDSP--CKM-KEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPM 346

Query: 430 SVGMNA-NGLFYYSGGV---------IDLNQRL--------YGTS----IPYWIVKNSWG 467
           +V     +   +Y  G+          +  +          YGT     + YWIVKNSWG
Sbjct: 347 AVAFEVYDDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWG 406

Query: 468 SDWGEK 473
           + WGE 
Sbjct: 407 TGWGEN 412

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441

 Score =  163 bits (414), Expect = 3e-44
 Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 14/164 (8%)

Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEE 556
           +   L+ +++V C     GC GG           + G+V +  +PY  ++S   C + +E
Sbjct: 255 QTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSP--CKM-KE 311

Query: 557 EGFKVKVKEYSRIP----YGEEEEMKKWVATRGPLSVGMNA-NGLFYYSGGV---IDLNQ 608
           + F+    EY  +        E  MK  +   GP++V     +   +Y  G+     L  
Sbjct: 312 DCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRD 371

Query: 609 RLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
                +  NHA+++VGYG +    G    YWIVKNSWG+ WGE 
Sbjct: 372 PFNPFELTNHAVLLVGYGTDS-ASGM--DYWIVKNSWGTGWGEN 412

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441

 Score = 82.1 bits (203), Expect = 8e-17
 Identities = 24/153 (15%), Positives = 49/153 (32%), Gaps = 21/153 (13%)

Query: 52  HDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSGTAVFEVNKFFDLSDSDLQQLTGLNLD 111
            +  +         +  +  +    +               ++  L+  D+ + +G    
Sbjct: 127 VNTAHLKNSQEKYSNRLYKYDHNFVKAINAIQKSWTATTYMEYETLTLGDMIRRSG---- 182

Query: 112 STLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWR---AEGVISKVKEQGK 168
                         S      +         +    LP ++DWR       +S V+ Q  
Sbjct: 183 ------------GHSRKIPRPKPAPLTAEIQQKILFLPTSWDWRNVHGINFVSPVRNQAS 230

Query: 169 CACCWAFSAVGVVEAMHAIQGNNLT--ELSVQH 199
           C  C++F+++G++EA   I  NN     LS Q 
Sbjct: 231 CGSCYSFASMGMLEARIRILTNNSQTPILSPQE 263

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Length = 265

 Score =  201 bits (512), Expect = 5e-60
 Identities = 42/227 (18%), Positives = 78/227 (34%), Gaps = 47/227 (20%)

Query: 294 DDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM 353
           +      D        +V++QG C   W F++   +E +  ++G   T++S   + +C  
Sbjct: 8   EYCNRLKDENNCISNLQVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYK 67

Query: 354 S--NGGCNGGRMDDA-LQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGF--------- 401
                 C+ G      LQ I D G + ++  YPY   +    C   E+            
Sbjct: 68  GEHKDRCDEGSSPMEFLQIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKIL 127

Query: 402 ---------------KVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGL--FYYSGG 444
                            + + +        + +K  V  +G +   + A  +  + +SG 
Sbjct: 128 HNKNEPNSLDGKGYTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGK 187

Query: 445 VIDLN---QRL--------YGTSI-------PYWIVKNSWGSDWGEK 473
            +                 YG  +        YWIV+NSWG  WG++
Sbjct: 188 KVKNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDE 234

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Length = 265

 Score =  155 bits (395), Expect = 2e-43
 Identities = 40/175 (22%), Positives = 63/175 (36%), Gaps = 30/175 (17%)

Query: 506 LVDCDMS--NGGCNGGRMDDA-LQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGF--- 559
           + +C        C+ G      LQ I D G + ++  YPY   +    C   E+      
Sbjct: 62  VANCYKGEHKDRCDEGSSPMEFLQIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLW 121

Query: 560 ---------------------KVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG-LF 597
                                  + + +        + +K  V  +G +   + A   + 
Sbjct: 122 DNGKILHNKNEPNSLDGKGYTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMG 181

Query: 598 YYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           Y   G    N  LC     +HA+ IVGYG     +G    YWIV+NSWG  WG++
Sbjct: 182 YEFSGKKVKN--LCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDE 234

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Length = 265

 Score = 77.4 bits (191), Expect = 5e-16
 Identities = 11/53 (20%), Positives = 23/53 (43%)

Query: 146 DDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
           +      D        +V++QG C   W F++   +E +  ++G   T++S  
Sbjct: 8   EYCNRLKDENNCISNLQVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISAL 60

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} PDB: 3mor_A* Length = 325

 Score =  192 bits (489), Expect = 5e-56
 Identities = 60/278 (21%), Positives = 97/278 (34%), Gaps = 59/278 (21%)

Query: 238 GVNKFF-DLSESDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDL 296
             +    +++  + ++L G+                   N   + +   +F        L
Sbjct: 29  KYDGVMQNITLREAKRLNGV----------------IKKNNNASILPKRRFTEEEARAPL 72

Query: 297 PEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQ-GNSLTELSVQQLVDC 351
           P +FD    W     I ++ +Q  C  CWA +A   +        G     +S   L+ C
Sbjct: 73  PSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLAC 132

Query: 352 DMSNG-GCNGGRMDDALQYIIDNGGVVSDQAYPYKA------SESERGCLVGEEEGFK-- 402
               G GCNGG  D A  Y     G+VSD   PY        S+S+ G     +  F   
Sbjct: 133 CSDCGDGCNGGDPDRAWAYFSST-GLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTP 191

Query: 403 -------------VKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNA-NGLFYYSGGV--- 445
                        V  + ++      E++  + +  RGP  V  +       Y+ GV   
Sbjct: 192 KCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHH 251

Query: 446 ----IDLNQ--RL--YGT--SIPYWIVKNSWGSDWGEK 473
                      RL  +GT   +PYW + NSW ++WG  
Sbjct: 252 VSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMD 289

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} PDB: 3mor_A* Length = 325

 Score =  139 bits (353), Expect = 7e-37
 Identities = 44/179 (24%), Positives = 69/179 (38%), Gaps = 32/179 (17%)

Query: 497 KLSRLATEKLVDCDMSNG-GCNGGRMDDALQYIIDNGGVVSDQAYPYKA------SESER 549
           +   ++   L+ C    G GCNGG  D A  Y    G +VSD   PY        S+S+ 
Sbjct: 120 QDVHISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTG-LVSDYCQPYPFPHCSHHSKSKN 178

Query: 550 GCLVGEEEGFK---------------VKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNA- 593
           G     +  F                V  + ++      E++  + +  RGP  V  +  
Sbjct: 179 GYPPCSQFNFDTPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY 238

Query: 594 NGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
                Y+ GV      +       HA+ +VG+G     +G   PYW + NSW ++WG  
Sbjct: 239 EDFIAYNSGVY---HHVSGQYLGGHAVRLVGWGTS---NGV--PYWKIANSWNTEWGMD 289

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} PDB: 3mor_A* Length = 325

 Score = 77.8 bits (192), Expect = 8e-16
 Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 21/113 (18%)

Query: 92  NKFFDLSDSDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEA 151
               +++  + ++L G+                   N   + +   +F        LP +
Sbjct: 32  GVMQNITLREAKRLNGV----------------IKKNNNASILPKRRFTEEEARAPLPSS 75

Query: 152 FD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNN-LTELSVQH 199
           FD    W     I ++ +Q  C  CWA +A   +       G      +S   
Sbjct: 76  FDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGD 128

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Length = 277

 Score =  181 bits (461), Expect = 2e-52
 Identities = 55/214 (25%), Positives = 83/214 (38%), Gaps = 35/214 (16%)

Query: 293 GDDLPEAFDWRAEG---VISKVKEQ---GKCACCWAFSAVGVVEAMHAIQGNSLTE---L 343
             DLP+++DWR        S  + Q     C  CWA ++   +     I+         L
Sbjct: 33  PADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLL 92

Query: 344 SVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESE-------RGCLVG 396
           SVQ ++DC  + G C GG       Y   +G +  +    Y+A + E         C   
Sbjct: 93  SVQNVIDCG-NAGSCEGGNDLSVWDYAHQHG-IPDETCNNYQAKDQECDKFNQCGTCNEF 150

Query: 397 EEEGFKVKVKEYSRIPYGE---EEEMKKWVATRGPLSVGMNANGLFY-YSGGV---IDLN 449
           +E         +    YG     E+M   +   GP+S G+ A      Y+GG+       
Sbjct: 151 KECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDT 210

Query: 450 QRL--------YGTS--IPYWIVKNSWGSDWGEK 473
             +        +G S    YWIV+NSWG  WGE+
Sbjct: 211 TYINHVVSVAGWGISDGTEYWIVRNSWGEPWGER 244

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Length = 277

 Score =  142 bits (360), Expect = 2e-38
 Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 21/167 (12%)

Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESE-------R 549
             + L+ + ++DC  + G C GG       Y   +G +  +    Y+A + E        
Sbjct: 88  PSTLLSVQNVIDCG-NAGSCEGGNDLSVWDYAHQHG-IPDETCNNYQAKDQECDKFNQCG 145

Query: 550 GCLVGEEEGFKVKVKEYSRIPYGE---EEEMKKWVATRGPLSVGMNANGLFY-YSGGVID 605
            C   +E         +    YG     E+M   +   GP+S G+ A      Y+GG+  
Sbjct: 146 TCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGI-- 203

Query: 606 LNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
             +        NH + + G+G     DGT   YWIV+NSWG  WGE+
Sbjct: 204 YAEYQDTTYI-NHVVSVAGWGIS---DGT--EYWIVRNSWGEPWGER 244

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Length = 277

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 13/73 (17%)

Query: 145 GDDLPEAFDWRAEG---VISKVKEQ---GKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
             DLP+++DWR        S  + Q     C  CWA ++   +     I+          
Sbjct: 33  PADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPS--- 89

Query: 199 HHDKVYSSVEDLL 211
                  SV++++
Sbjct: 90  ----TLLSVQNVI 98

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A* Length = 254

 Score =  178 bits (455), Expect = 5e-52
 Identities = 56/230 (24%), Positives = 88/230 (38%), Gaps = 52/230 (22%)

Query: 295 DLPEAFDWRAE----GVISKVKEQGKCACCWAFSAVGVVEAMHAIQ--GNSLTELSVQQL 348
           ++P +FD R +      I+ +++Q +C  CWAF AV  +     IQ  G    ELS   L
Sbjct: 2   EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDL 61

Query: 349 VDCDMSNG-GCNGGRMDDALQYIIDNGGV--------VSDQAYPYKASES---------- 389
           + C  S G GC GG +  A  Y +  G V           + YP+   E           
Sbjct: 62  LSCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCG 121

Query: 390 ---------ERGCLVGEEEGFKVKVKEYSRIPY---GEEEEMKKWVATRGPLSVGMNA-N 436
                    ++ C    +  +  + K   +  Y    +E+ ++K +   GP+  G     
Sbjct: 122 SKIYKTPRCKQTCQKKYKTPYT-QDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYE 180

Query: 437 GLFYYSGGV-------IDLNQ--RL--YGTS--IPYWIVKNSWGSDWGEK 473
               Y  G+              R+  +G     PYW++ NSW  DWGE 
Sbjct: 181 DFLNYKSGIYKHITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGEN 230

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A* Length = 254

 Score =  135 bits (343), Expect = 3e-36
 Identities = 42/189 (22%), Positives = 70/189 (37%), Gaps = 41/189 (21%)

Query: 496 SKLSRLATEKLVDCDMSNG-GCNGGRMDDALQYIIDNGGV--------VSDQAYPYKASE 546
            +   L+   L+ C  S G GC GG +  A  Y +  G V           + YP+   E
Sbjct: 51  KQNVELSAVDLLSCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCE 110

Query: 547 S-------------------ERGCLVGEEEGFKVKVKEYSRIPY---GEEEEMKKWVATR 584
                               ++ C    +  +  + K   +  Y    +E+ ++K +   
Sbjct: 111 HHTKGKYPPCGSKIYKTPRCKQTCQKKYKTPYT-QDKHRGKSSYNVKNDEKAIQKEIMKY 169

Query: 585 GPLSVGMNA-NGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKN 643
           GP+  G         Y  G+    + +       HA+ I+G+G E   +    PYW++ N
Sbjct: 170 GPVEAGFTVYEDFLNYKSGI---YKHITGETLGGHAIRIIGWGVE---NKA--PYWLIAN 221

Query: 644 SWGSDWGEK 652
           SW  DWGE 
Sbjct: 222 SWNEDWGEN 230

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A* Length = 254

 Score = 73.0 bits (180), Expect = 1e-14
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 147 DLPEAFDWRAE----GVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNN--LTELSVQH 199
           ++P +FD R +      I+ +++Q +C  CWAF AV  +     IQ       ELS   
Sbjct: 2   EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVD 60

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} Length = 222

 Score =  174 bits (443), Expect = 8e-51
 Identities = 64/197 (32%), Positives = 96/197 (48%), Gaps = 26/197 (13%)

Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P + DWR +G ++ VK+QG C  CWAF A G +E + AI    L  +S QQ+VDCD    
Sbjct: 2   PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61

Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEE 416
              GG  DDA +++I NGG+ SD  YPY   +    C + +      ++  Y+ +P    
Sbjct: 62  XXXGGDADDAFRWVITNGGIASDANYPYTGVDGT--CDLNKPIA--ARIDGYTNVP-NSS 116

Query: 417 EEMKKWVATRGPLSVGMNANGL---FYYSGGVI----------DLNQRL----YGTS--- 456
             +   VA   P+SV +  +      Y   G+            ++  +    YG++   
Sbjct: 117 SALLDAVAK-QPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTN 175

Query: 457 IPYWIVKNSWGSDWGEK 473
             YWIVKNSWG++WG  
Sbjct: 176 ADYWIVKNSWGTEWGID 192

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} Length = 222

 Score =  117 bits (295), Expect = 3e-30
 Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 19/166 (11%)

Query: 491 TGVLPSKLSRLATEK-LVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESER 549
           TG L S +S    E+ +VDCD       GG  DDA +++I NGG+ SD  YPY   +   
Sbjct: 42  TGRLIS-VS----EQQIVDCDTXXXXXXGGDADDAFRWVITNGGIASDANYPYTGVDGT- 95

Query: 550 GCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGL---FYYSGGVIDL 606
            C + +      ++  Y+ +P      +   VA   P+SV +  +      Y   G+   
Sbjct: 96  -CDLNKPIA--ARIDGYTNVP-NSSSALLDAVAK-QPVSVNIYTSSTSFQLYTGPGIFAG 150

Query: 607 NQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           +    +P   +H ++IVGYG      GT+  YWIVKNSWG++WG  
Sbjct: 151 SSCSDDPATVDHTVLIVGYGSN----GTNADYWIVKNSWGTEWGID 192

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} Length = 222

 Score = 81.4 bits (201), Expect = 1e-17
 Identities = 22/50 (44%), Positives = 30/50 (60%)

Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
           P + DWR +G ++ VK+QG C  CWAF A G +E + AI    L  +S Q
Sbjct: 2   PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQ 51

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Length = 266

 Score =  173 bits (441), Expect = 7e-50
 Identities = 56/232 (24%), Positives = 84/232 (36%), Gaps = 52/232 (22%)

Query: 293 GDDLPEAFDWRAE----GVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLT--ELSVQ 346
              LP +FD R +      I ++++QG C   WAF AV  +     I  N+    E+S +
Sbjct: 4   DLKLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAE 63

Query: 347 QLVDCDMS--NGGCNGGRMDDALQYIIDNGGV------VSDQAYPYKASESE-------- 390
            L+ C  S    GCNGG   +A  +    G V            PY     E        
Sbjct: 64  DLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARP 123

Query: 391 ------------RGCLVGEEEGFKVKVKEYSRIPY---GEEEEMKKWVATRGPLSVGMNA 435
                       + C  G    +K + K Y    Y     E+++   +   GP+    + 
Sbjct: 124 PCTGEGDTPKCSKICEPGYSPTYK-QDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV 182

Query: 436 NG-LFYYSGGV-------IDLNQ--RL--YGT--SIPYWIVKNSWGSDWGEK 473
                 Y  GV       +      R+  +G     PYW+V NSW +DWG+ 
Sbjct: 183 YSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDN 234

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Length = 266

 Score =  131 bits (332), Expect = 1e-34
 Identities = 46/185 (24%), Positives = 68/185 (36%), Gaps = 41/185 (22%)

Query: 500 RLATEKLVDCDMS--NGGCNGGRMDDALQYIIDNGGV------VSDQAYPYKASESE--- 548
            ++ E L+ C  S    GCNGG   +A  +    G V            PY     E   
Sbjct: 59  EVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHV 118

Query: 549 -----------------RGCLVGEEEGFKVKVKEYSRIPY---GEEEEMKKWVATRGPLS 588
                            + C  G    +K + K Y    Y     E+++   +   GP+ 
Sbjct: 119 NGARPPCTGEGDTPKCSKICEPGYSPTYK-QDKHYGYNSYSVSNSEKDIMAEIYKNGPVE 177

Query: 589 VGMNANG-LFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGS 647
              +       Y  GV    Q +       HA+ I+G+G E   +GT  PYW+V NSW +
Sbjct: 178 GAFSVYSDFLLYKSGV---YQHVTGEMMGGHAIRILGWGVE---NGT--PYWLVANSWNT 229

Query: 648 DWGEK 652
           DWG+ 
Sbjct: 230 DWGDN 234

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Length = 266

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 145 GDDLPEAFDWRAE----GVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLT--ELSVQ 198
              LP +FD R +      I ++++QG C   WAF AV  +     I  N     E+S +
Sbjct: 4   DLKLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAE 63

Query: 199 H 199
            
Sbjct: 64  D 64

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317

 Score =  173 bits (440), Expect = 4e-49
 Identities = 68/288 (23%), Positives = 104/288 (36%), Gaps = 76/288 (26%)

Query: 238 GVNKFFDLSESDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLP 297
           G N F+++  S L++L G  L                        +  Q         LP
Sbjct: 28  GHN-FYNVDMSYLKRLCGTFLGGP---------------------KPPQRVMFTEDLKLP 65

Query: 298 EAFDWRAE----GVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSL--TELSVQQLVDC 351
            +FD R +      I ++++QG C  CWAF AV  +     I  N+    E+S + L+ C
Sbjct: 66  ASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTC 125

Query: 352 DMS--NGGCNGGRMDDALQYIIDNGGVVSDQAY-------PYKASESE------------ 390
             S    GCNGG   +A  +     G+VS   Y       PY     E            
Sbjct: 126 CGSMCGDGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTG 184

Query: 391 --------RGCLVGEEEGFKVKVKEYSRIPY---GEEEEMKKWVATRGPLSVGMNA-NGL 438
                   + C  G    +K + K Y    Y     E+++   +   GP+    +  +  
Sbjct: 185 EGDTPKCSKICEPGYSPTYK-QDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDF 243

Query: 439 FYYSGGV-------IDLNQ--RL--YGT--SIPYWIVKNSWGSDWGEK 473
             Y  GV       +      R+  +G     PYW+V NSW +DWG+ 
Sbjct: 244 LLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDN 291

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317

 Score =  129 bits (327), Expect = 2e-33
 Identities = 48/186 (25%), Positives = 72/186 (38%), Gaps = 43/186 (23%)

Query: 500 RLATEKLVDCDMS--NGGCNGGRMDDALQYIIDNGGVVSDQAY-------PYKASESE-- 548
            ++ E L+ C  S    GCNGG   +A  +    G +VS   Y       PY     E  
Sbjct: 116 EVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKG-LVSGGLYESHVGCRPYSIPPCEHH 174

Query: 549 ------------------RGCLVGEEEGFKVKVKEYSRIPY---GEEEEMKKWVATRGPL 587
                             + C  G    +K + K Y    Y     E+++   +   GP+
Sbjct: 175 VNGSRPPCTGEGDTPKCSKICEPGYSPTYK-QDKHYGYNSYSVSNSEKDIMAEIYKNGPV 233

Query: 588 SVGMNA-NGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWG 646
               +  +    Y  GV    Q +       HA+ I+G+G E   +GT  PYW+V NSW 
Sbjct: 234 EGAFSVYSDFLLYKSGVY---QHVTGEMMGGHAIRILGWGVE---NGT--PYWLVANSWN 285

Query: 647 SDWGEK 652
           +DWG+ 
Sbjct: 286 TDWGDN 291

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 27/112 (24%)

Query: 94  FFDLSDSDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFD 153
           F+++  S L++L G  L                        +  Q         LP +FD
Sbjct: 31  FYNVDMSYLKRLCGTFLGGP---------------------KPPQRVMFTEDLKLPASFD 69

Query: 154 WRAE----GVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNL--TELSVQH 199
            R +      I ++++QG C  CWAF AV  +     I  N     E+S + 
Sbjct: 70  AREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAED 121

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Length = 291

 Score =  170 bits (432), Expect = 2e-48
 Identities = 34/214 (15%), Positives = 69/214 (32%), Gaps = 38/214 (17%)

Query: 294 DDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGN--SLTELSVQQLVDC 351
             LP   D        +V +QG+   C A +    ++                +    + 
Sbjct: 55  AALPPKVDLTPP---FQVYDQGRIGSCTANALAAAIQFERIHDKQSPEFIPSRLFIYYNE 111

Query: 352 --DMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASE--------------SERGCLV 395
                +   + G M      ++   GV  ++ +PY  +               S++    
Sbjct: 112 RKIEGHVNYDSGAMIRDGIKVLHKLGVCPEKEWPYGDTPADPRTEEFPPGAPASKKPSDQ 171

Query: 396 GEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNA--NGLFYYSGGVIDLNQRL- 452
             ++    K+ EYSR+   + + +K  +A   P   G +   + +   S  V        
Sbjct: 172 CYKDAQNYKITEYSRVA-QDIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIPLPTKN 230

Query: 453 -------------YGTSIPYWIVKNSWGSDWGEK 473
                        Y   I ++ ++NSWG++ GE 
Sbjct: 231 DTLEGGHAVLCVGYDDEIRHFRIRNSWGNNVGED 264

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Length = 291

 Score =  137 bits (347), Expect = 2e-36
 Identities = 30/165 (18%), Positives = 63/165 (38%), Gaps = 26/165 (15%)

Query: 506 LVDC--DMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASE--------------SER 549
             +      +   + G M      ++   GV  ++ +PY  +               S++
Sbjct: 108 YYNERKIEGHVNYDSGAMIRDGIKVLHKLGVCPEKEWPYGDTPADPRTEEFPPGAPASKK 167

Query: 550 GCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNA--NGLFYYSGGVIDLN 607
                 ++    K+ EYSR+   + + +K  +A   P   G +   + +   S  V    
Sbjct: 168 PSDQCYKDAQNYKITEYSRVA-QDIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIPL 226

Query: 608 QRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
               +     HA++ VGY +E +       ++ ++NSWG++ GE 
Sbjct: 227 PTKNDTLEGGHAVLCVGYDDEIR-------HFRIRNSWGNNVGED 264

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Length = 291

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 3/53 (5%)

Query: 146 DDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQ 198
             LP   D        +V +QG+   C A +    ++        +   +  +
Sbjct: 55  AALPPKVDLTPP---FQVYDQGRIGSCTANALAAAIQFERIHDKQSPEFIPSR 104

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Length = 383

 Score = 57.9 bits (139), Expect = 4e-09
 Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 13/116 (11%)

Query: 288 NSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQ 347
           ++ +   +    F    E  I+ VK Q +   CW +S+   +E+     G    +LS   
Sbjct: 2   DTEKKVSEEGFVFTTVKENPITSVKNQNRAGTCWCYSSYSFLESELLRMGKGEYDLSEMF 61

Query: 348 LVDCDMSNGG------------CNGGRMDDALQYIIDNGGVVSDQAYPYKASESER 391
            V     +                GG   DAL Y ++  G+V ++        ++ 
Sbjct: 62  TVYNTYLDRADAAVRTHGDVSFSQGGSFYDAL-YGMETFGLVPEEEMRPGMMYADT 116

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Length = 383

 Score = 44.8 bits (105), Expect = 6e-05
 Identities = 46/366 (12%), Positives = 100/366 (27%), Gaps = 51/366 (13%)

Query: 140 NSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
           ++ +   +    F    E  I+ VK Q +   CW +S+   +E+     G    +LS   
Sbjct: 2   DTEKKVSEEGFVFTTVKENPITSVKNQNRAGTCWCYSSYSFLESELLRMGKGEYDLSEMF 61

Query: 200 ------HDKVYSSVEDLLRRHEN-------FVTNVEK-----AEDYQSEDSGTAVFGVNK 241
                  D+  ++V        +        +  +E       E+ +           + 
Sbjct: 62  TVYNTYLDRADAAVRTHGDVSFSQGGSFYDALYGMETFGLVPEEEMRPGMMYADTLSNHT 121

Query: 242 FFDLSESDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFD 301
                   +           L+            N      +A       +    PE F 
Sbjct: 122 ELSALTDAMVAAIAKGKLRKLQS---------DENNAMLWKKAVAAVHQIYLGVPPEKFT 172

Query: 302 WRAEGVISKVKEQGKCACCWAFSAVG-----------VVEAMHAIQGNSLTELSVQQL-- 348
           ++ +    K   +        + ++             +E     +      L + +   
Sbjct: 173 YKGKEYTPKSFFESTGLKASDYVSLTSYTHHPFYTQFPLEIQDNWRHGMSYNLPLDEFME 232

Query: 349 -VDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKE 407
             D  ++ G       D +      +G  V          +   G  +      K + K+
Sbjct: 233 VFDNAINTGYTIAWGSDVSESGFTRDGVAVMPDDEKV---QELSGSDMAHWLKLKPEEKK 289

Query: 408 YSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLYGTSIPYWIVKNSWG 467
            +  P  ++   +             + +G+  Y G   D           Y++VKNSWG
Sbjct: 290 LNTKPQPQKWCTQAERQLAYDNYETTDDHGMQIY-GIAKDQEGN------EYYMVKNSWG 342

Query: 468 SDWGEK 473
           ++    
Sbjct: 343 TNSKYN 348

>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 106

 Score = 52.4 bits (126), Expect = 9e-09
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 43  TRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSGTAVFEVNKFFDLSDSDL 102
             F +F   + K Y++ E+  RR+  F  N+     + ++   +   ++N F DLS  + 
Sbjct: 23  DAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGY-SYSLKMNHFGDLSRDEF 81

Query: 103 QQL-TGLNLDSTL 114
           ++   G      L
Sbjct: 82  RRKYLGFKKSRNL 94

>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 106

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 198 QHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQL-TGL 256
             + K Y++ E+  RR+  F  N+     +  +   +    +N F DLS  + ++   G 
Sbjct: 30  AMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGY-SYSLKMNHFGDLSRDEFRRKYLGF 88

Query: 257 NLDSTL 262
                L
Sbjct: 89  KKSRNL 94

>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster} Length = 80

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 43  TRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDY-QREDSGTAVFE--VNKFFDLSD 99
             ++ +    DK Y + EDL+RR   +  +  + E++ ++ + G   ++  +N   DL+ 
Sbjct: 8   EEWVEYKSKFDKNYEAEEDLMRR-RIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTP 66

Query: 100 SDLQQLTGLNL 110
            +  Q +G  +
Sbjct: 67  EEFAQRSGKKV 77

>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster} Length = 80

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 200 HDKVYSSVEDLLRRHENFVTNVEKAEDYQSE-DSGTAVF--GVNKFFDLSESDLQQLTGL 256
            DK Y + EDL+RR   +  +  + E++  + + G   +  G+N   DL+  +  Q +G 
Sbjct: 17  FDKNYEAEEDLMRR-RIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTPEEFAQRSGK 75

Query: 257 NL 258
            +
Sbjct: 76  KV 77

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 81/531 (15%), Positives = 139/531 (26%), Gaps = 150/531 (28%)

Query: 193 TELSVQHHDKVYSSVEDLLRRH-ENFVTN--VEKAEDY-----QSED------SGTAVFG 238
            E     +       +D+L    + FV N   +  +D        E+      S  AV G
Sbjct: 9   FETGEHQY-----QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63

Query: 239 VNKFFDLSESDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLR---HGDD 295
             + F    S  +++    ++  L      L +P  + Q    M    +   R   + D 
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND- 122

Query: 296 LPEAFD----WRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQG---NSLTELSVQQL 348
             + F      R +    K+++    A      A  V+  +  + G     +        
Sbjct: 123 -NQVFAKYNVSRLQ-PYLKLRQ----ALLELRPAKNVL--IDGVLGSGKTWVALDVCLSY 174

Query: 349 -VDCDMSN-------GGCNGGR----MDDALQYIID-NGGVVSDQAYPYK---------- 385
            V C M           CN       M   L Y ID N    SD +   K          
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 386 ----ASESERGCL-----VGEE---EGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGM 433
                S+    CL     V        F +      +I           + TR       
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLS----CKI----------LLTTR------- 273

Query: 434 NANGLFYYSGGVIDLNQRLYGTSIPYWIVKNSWGSDWGEKVE--DKVGSSGNRTRDL--E 489
                      V D       T I   +  +S      E      K      R +DL  E
Sbjct: 274 --------FKQVTDFLSAATTTHIS--LDHHSMTLTPDEVKSLLLKY--LDCRPQDLPRE 321

Query: 490 LTGVLPSKLSRLATE-----------KLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQ 538
           +    P +LS +A             K V+CD         ++   ++  ++       +
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCD---------KLTTIIESSLNVLEPAEYR 372

Query: 539 AYPYKASESERGCLVGEEEGFKVKVKEYSRI----PYGEEEEMKKWVATRGPLSVGMNAN 594
              +         L        +     S I       +   +   +     L       
Sbjct: 373 KM-FDR-------LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-LVEKQPKE 423

Query: 595 GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIP------YW 639
                    ++L  +L N +   H  I+  Y   +  D   +       Y+
Sbjct: 424 STISIPSIYLELKVKLEN-EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	655
3tnx_A	363	Papain; hydrolase, cytoplasm for recombinant expre	100.0
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	100.0
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	100.0
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	100.0
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	100.0
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	100.0
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	100.0
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	100.0
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	100.0
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	100.0
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	100.0
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	100.0
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	100.0
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	100.0
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	100.0
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	100.0
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	100.0
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	100.0
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	100.0
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	100.0
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	100.0
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	100.0
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	100.0
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	100.0
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	100.0
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	100.0
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	100.0
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	100.0
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	100.0
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	100.0
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	100.0
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	100.0
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	100.0
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	100.0
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	100.0
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	100.0
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	100.0
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	100.0
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	100.0
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	100.0
2e01_A	457	Cysteine proteinase 1; bleomycin hydrolase, thiol	100.0
2cb5_A	453	Protein (bleomycin hydrolase); aminopeptidase, cys	100.0
3tnx_A	363	Papain; hydrolase, cytoplasm for recombinant expre	100.0
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	100.0
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	100.0
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	99.98
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	99.98
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	99.98
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	99.98
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	99.98
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	99.98
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	99.98
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	99.98
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	99.98
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	99.98
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	99.97
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	99.97
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	99.97
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	99.97
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	99.97
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	99.97
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	99.97
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	99.97
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	99.97
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	99.97
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	99.97
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	99.97
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	99.97
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	99.97
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	99.97
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	99.97
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	99.97
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	99.97
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	99.97
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	99.97
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	99.97
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	99.97
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	99.96
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	99.96
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	99.96
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	99.96
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	99.96
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	99.93
2cb5_A	453	Protein (bleomycin hydrolase); aminopeptidase, cys	99.87
2e01_A	457	Cysteine proteinase 1; bleomycin hydrolase, thiol	99.86
3f75_P	106	Toxopain-2, cathepsin L propeptide; medical struct	99.78
2l95_A	80	Crammer, LP06209P; cysteine proteinase inhibitor,	99.76
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	99.66
3f75_P	106	Toxopain-2, cathepsin L propeptide; medical struct	99.45
2l95_A	80	Crammer, LP06209P; cysteine proteinase inhibitor,	99.43
1x9y_A	367	Cysteine proteinase; half-barrel, barrel-sandwich-	89.68
1cv8_A	174	Staphopain; cysteine protease, thiol protease, pap	81.87
3erv_A	236	Putative C39-like peptidase; structural genomics,	81.47
1cv8_A	174	Staphopain; cysteine protease, thiol protease, pap	80.49
1pxv_A	183	Cysteine protease; hydrolase; 1.80A {Staphylococcu	80.22

>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}

Probab=100.00  E-value=6.7e-67  Score=550.74  Aligned_cols=283  Identities=28%  Similarity=0.528  Sum_probs=241.0

Q ss_pred             chhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeCcCCCCChHHHHh-hcCCCCCCcccccCCCC
Q psy11694        191 NLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQ-LTGLNLDSTLEDIQPSL  269 (655)
Q Consensus       191 ~l~~~~~q~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~~~~~g~N~FsDlt~eEf~~-~~~~~~~~~~~~~~~~~  269 (655)
                      .||+.|+++|+|.|.+.+|+.+|+.||++|+++|++||++. .+|++|+|+|+|||.+||++ +++.......     ..
T Consensus        64 ~lf~~f~~~~~K~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~~-~sy~~g~N~FaDlT~eEf~~~~~~~~~~~~~-----~~  137 (363)
T 3tnx_A           64 QLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKN-NSYWLGLNVFADMSNDEFKEKYTGSIAGNYT-----TT  137 (363)
T ss_dssp             HHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHTTSC-CSEEECSCTTTTSCHHHHHHHHSCSSCSCCC-----CS
T ss_pred             HHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHcCC-CCeEEeccccccCCHHHHHHHhccccccccc-----cc
Confidence            58999999999999999999999999999999999999874 59999999999999999999 7764432110     00


Q ss_pred             CCCCCCCCcchhhhhhhcccCCCCCCCCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHH
Q psy11694        270 QAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLV  349 (655)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~  349 (655)
                      ......            .......+||++||||++|+||||||||.||||||||++++||++++|+++.++.||+|+|+
T Consensus       138 ~~~~~~------------~~~~~~~~lP~s~DWR~~g~VtpVkdQG~CGSCWAFsa~~alE~~~~i~tg~~~~LSeQ~Lv  205 (363)
T 3tnx_A          138 ELSYEE------------VLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELL  205 (363)
T ss_dssp             SSSSSC------------CCCCSCCCCCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHH
T ss_pred             cccccc------------ccCcccCCCCcceecccCCCCCCCccCCcCCchhhhhhcccHHHHHHHHcCCCCCcCHHHHh
Confidence            000000            00112357999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCCCCCCCCCcHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCe
Q psy11694        350 DCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPL  429 (655)
Q Consensus       350 dC~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV  429 (655)
                      ||+..+.||+||++..|++|+.+. ||++|++|||.+.++  .|...........+.++..++..++..|+.+|+ +|||
T Consensus       206 dC~~~~~GC~GG~~~~a~~yi~~~-Gi~~e~~yPY~~~~~--~c~~~~~~~~~~~~~~~~~~~~~~e~~l~~~v~-~gPv  281 (363)
T 3tnx_A          206 DCDRRSYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQR--YCRSREKGPYAAKTDGVRQVQPYNEGALLYSIA-NQPV  281 (363)
T ss_dssp             HHCTTSCTTBCCCHHHHHHHHHHT-CBCBTTTSCCCSSCC--CCCGGGGCSCSBCCCEEEEECSSCHHHHHHHHT-TSCE
T ss_pred             cccCCCCCCCCCChHHHHhHHHhc-CccccccCCCcCcCC--CcccCCCCCceeeccceEEcchhhHHHHHHHHH-cCCc
Confidence            999888999999999999999887 999999999999887  666544443566788888888888999999888 7999


Q ss_pred             EEEEEcCC--cccccccEEe------CCceE--EcCCccEEEEecCCCCccCCCceEEecccCCc---cccccccCCcc
Q psy11694        430 SVGMNANG--LFYYSGGVID------LNQRL--YGTSIPYWIVKNSWGSDWGEKVEDKVGSSGNR---TRDLELTGVLP  495 (655)
Q Consensus       430 ~v~i~~~~--~~~Y~~Gi~~------~~Hav--yg~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~---~~~~~~~gv~p  495 (655)
                      +|+|++..  |++|++|||.      ++|||  .|.|.+|||||||||++|||+|||||+|+.+.   .|++......|
T Consensus       282 svai~a~~~~F~~Y~sGVy~~~~~~~lnHaV~iVGyG~~YWIVKNSWGt~WGe~GY~rI~Rg~~~~~~~CGI~~~a~yP  360 (363)
T 3tnx_A          282 SVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPNYILIRNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYP  360 (363)
T ss_dssp             EEEECCCSHHHHTEEEEEECCCCCSCCCEEEEEEEEETTEEEEECSBCTTSTBTTEEEEECCSCCSSCGGGTTSCEEEE
T ss_pred             EEEEEecchhhhCCCCCEECCCCCCCCCeEEEEEEcCCCcEEEEeCCCCccccCcEEEEEcCCCCCCCcCCccceeeec
Confidence            99999865  9999999997      79999  66677999999999999999999999998643   47776666555

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0

Probab=100.00  E-value=1.4e-66  Score=546.15  Aligned_cols=289  Identities=30%  Similarity=0.556  Sum_probs=247.9

Q ss_pred             chhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHhcC---CCCceeeeeCcCCCCChHHHHh-hcCCCCCCcccccC
Q psy11694        191 NLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSE---DSGTAVFGVNKFFDLSESDLQQ-LTGLNLDSTLEDIQ  266 (655)
Q Consensus       191 ~l~~~~~q~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~---~~~~~~~g~N~FsDlt~eEf~~-~~~~~~~~~~~~~~  266 (655)
                      .+|+.|+++|+|.|.+.+|+..|+.||++|+++|++||++   +..+|++|+|+|+|||.+||++ +++.+.+..     
T Consensus        20 ~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlt~eEf~~~~~~~~~~~~-----   94 (331)
T 3qj3_A           20 EKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDMTPEEMKAYTHGLIMPAD-----   94 (331)
T ss_dssp             HHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEECCSTTTTCCHHHHHHHHSCCCCCSS-----
T ss_pred             HHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCceeecccccccCCHHHHHHHhcccccccc-----
Confidence            5799999999999999889999999999999999999985   5679999999999999999999 776543310     


Q ss_pred             CCCCCCCCCCCcchhhhhhhcccCCCCCCCCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCC--CcCCC
Q psy11694        267 PSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNS--LTELS  344 (655)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~--~~~lS  344 (655)
                         ......     .........+....+||++||||++|+||||||||.||||||||++++||++++|+++.  ++.||
T Consensus        95 ---~~~~~~-----~~~~~~~~~~~~~~~lP~s~DwR~~g~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~~~LS  166 (331)
T 3qj3_A           95 ---LHKNGI-----PIKTREDLGLNASVRYPASFDWRDQGMVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVS  166 (331)
T ss_dssp             ---TTTTCE-----EECSGGGGTCCSSCCCCSSEEGGGGTCSCCCCBCCSSCCHHHHHHHHHHHHHHHHHHCTTSCCCBC
T ss_pred             ---ccccCc-----ccccccccccccccCCCcceecccCCccCCCccCcccchhhHHHHHHHHHHHHHHHhCCCcccCcC
Confidence               000000     00000000001134799999999999999999999999999999999999999999998  89999


Q ss_pred             HHHHHHccCCCCCCCCCcHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHh
Q psy11694        345 VQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVA  424 (655)
Q Consensus       345 ~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~  424 (655)
                      +|+|+||+..+.||+||++..|++|+.+++||++|++|||.+..+  .|...... ..++|.+|..++..++++||++|+
T Consensus       167 eQ~LvdC~~~~~GC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~--~C~~~~~~-~~~~i~~~~~v~~~~e~~lk~al~  243 (331)
T 3qj3_A          167 EQQLVDCVPNALGCSGGWMNDAFTYVAQNGGIDSEGAYPYEMADG--NCHYDPNQ-VAARLSGYVYLSGPDENMLADMVA  243 (331)
T ss_dssp             HHHHHHHCTTSCGGGCCCHHHHHHHHHHHTCEEBTTTSCCCSSCC--CCCCCTTS-EEECCSEEEEESSCCHHHHHHHHH
T ss_pred             HHHHhhhccCCCCCCCCCHHHHHHHHHHcCCcCcccccCccCCCC--CCCCCccc-ceeEeeEEEEeCCCCHHHHHHHHH
Confidence            999999998889999999999999999988999999999999888  89877655 678999999999889999999999


Q ss_pred             hCCCeEEEEEcCC-cccccccEEe--------CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCCcccccc
Q psy11694        425 TRGPLSVGMNANG-LFYYSGGVID--------LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLE  489 (655)
Q Consensus       425 ~~gPV~v~i~~~~-~~~Y~~Gi~~--------~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~  489 (655)
                      ++|||+|+|++.. |++|++|||.        ++|||    ||+  +.+|||||||||++|||+|||||+|+.+..|++.
T Consensus       244 ~~GPV~v~i~a~~~f~~Y~~Gvy~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~  323 (331)
T 3qj3_A          244 TKGPVAVAFDADDPFGSYSGGVYYNPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIA  323 (331)
T ss_dssp             HHCCEEEEECCCTTGGGEEEEEECCTTCCSSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTT
T ss_pred             hCCCEEEEEEcccccccccCceEeCCCCCCCcCCEEEEEEEEeccCCceEEEEEcCCCCCcCCCCEEEEEcCCCCccCcC
Confidence            9999999999987 9999999997        68999    775  7899999999999999999999999875667777


Q ss_pred             ccCCcc
Q psy11694        490 LTGVLP  495 (655)
Q Consensus       490 ~~gv~p  495 (655)
                      .....|
T Consensus       324 ~~~~~p  329 (331)
T 3qj3_A          324 GVASVP  329 (331)
T ss_dssp             TSCEEE
T ss_pred             Cceeee
Confidence            665544

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}

Probab=100.00  E-value=6.8e-66  Score=539.32  Aligned_cols=283  Identities=33%  Similarity=0.586  Sum_probs=243.3

Q ss_pred             chhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHhcC---CCCceeeeeCcCCCCChHHHHhhcCCCCCCcccccCC
Q psy11694        191 NLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSE---DSGTAVFGVNKFFDLSESDLQQLTGLNLDSTLEDIQP  267 (655)
Q Consensus       191 ~l~~~~~q~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~---~~~~~~~g~N~FsDlt~eEf~~~~~~~~~~~~~~~~~  267 (655)
                      ..|+.|+++|+|.|.+.+|+..|+.||++|+++|++||++   +..+|++|+|+|+|||.+||+++++.+....     +
T Consensus        25 ~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlt~eEf~~~~g~~~~~~-----~   99 (329)
T 3qt4_A           25 EQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSKEEFLAYVNRGKAQK-----P   99 (329)
T ss_dssp             HHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEECCCGGGGCCHHHHHHHHHHTCCC-------
T ss_pred             HHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCeEEeccccccCCHHHHHHhcCCccccc-----c
Confidence            4699999999999999888899999999999999999984   4679999999999999999999766442200     0


Q ss_pred             CCCCCCCCCCcchhhhhhhcccCCCCCCCCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHH
Q psy11694        268 SLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQ  347 (655)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~  347 (655)
                      ...  ...     . ....    ....+||++||||++ +||||||||.||||||||++++||++++|+++.++.||+|+
T Consensus       100 ~~~--~~~-----~-~~~~----~~~~~lP~~~DwR~~-~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~LSeQ~  166 (329)
T 3qt4_A          100 KHP--ENL-----R-MPYV----SSKKPLAASVDWRSN-AVSEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQN  166 (329)
T ss_dssp             ------CC-----E-EECC----CCCSCCCSCEECTTT-SCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHH
T ss_pred             ccc--ccc-----c-cccc----CCccCCCCCEEcccc-ccCCCccCCCCcChHHHHHHHHHHHHHHHHcCCcccCCHHH
Confidence            000  000     0 0000    011479999999999 99999999999999999999999999999999999999999


Q ss_pred             HHHccC--CCCCCCCCcHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhh
Q psy11694        348 LVDCDM--SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVAT  425 (655)
Q Consensus       348 l~dC~~--~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~  425 (655)
                      |+||+.  .+.||+||++..|++|+.++ ||++|++|||.+..+  .|...... ..++|.+|..++..++++||++|++
T Consensus       167 LvdC~~~~g~~GC~GG~~~~a~~yi~~~-Gi~~e~~yPY~~~~~--~C~~~~~~-~~~~i~~~~~v~~~~e~~lk~al~~  242 (329)
T 3qt4_A          167 LIDCSSSYGNAGCDGGWMDSAFSYIHDY-GIMSESAYPYEAQGD--YCRFDSSQ-SVTTLSGYYDLPSGDENSLADAVGQ  242 (329)
T ss_dssp             HHHHCGGGTCCTTBCCCHHHHHHHHHHS-CBCBTTTSCCCSSCC--CCCCCGGG-CCBCCSEEEECCTTCHHHHHHHHHH
T ss_pred             HHHhccccCCCCCCCCChhHHHHHHHHc-CCCcHHHeeeecCCC--CCCCCccc-ceEEeceEEEecCCCHHHHHHHHHh
Confidence            999986  37899999999999999999 999999999999888  89876654 6778999999998899999999999


Q ss_pred             CCCeEEEEEcCC-cccccccEEe--------CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCCccccccc
Q psy11694        426 RGPLSVGMNANG-LFYYSGGVID--------LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLEL  490 (655)
Q Consensus       426 ~gPV~v~i~~~~-~~~Y~~Gi~~--------~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~~  490 (655)
                      +|||+|+|++.. |++|++|||.        ++|||    ||+  +.+|||||||||++||++|||||+|+.+..|++..
T Consensus       243 ~GPV~v~i~a~~~f~~Y~~GVy~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~  322 (329)
T 3qt4_A          243 AGPVAVAIDATDELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGIAT  322 (329)
T ss_dssp             TCCEEEEECCCGGGTTEEEEEECCSSCCSSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTT
T ss_pred             CCCEEEEEecChhhhhccCceeecCCCCCCcCCEEEEEEEEEeeCCccEEEEEeCCCCcccCCcEEEEEeCCCCccCCCC
Confidence            999999999995 9999999996        68999    775  78999999999999999999999998755677776


Q ss_pred             cCCcc
Q psy11694        491 TGVLP  495 (655)
Q Consensus       491 ~gv~p  495 (655)
                      ....|
T Consensus       323 ~~~yp  327 (329)
T 3qt4_A          323 AASYP  327 (329)
T ss_dssp             TCEEE
T ss_pred             ceeEe
Confidence            66554

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A

Probab=100.00  E-value=3.6e-65  Score=532.56  Aligned_cols=284  Identities=33%  Similarity=0.576  Sum_probs=243.1

Q ss_pred             chhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHhcC---CCCceeeeeCcCCCCChHHHHh-hcCCCCCCcccccC
Q psy11694        191 NLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSE---DSGTAVFGVNKFFDLSESDLQQ-LTGLNLDSTLEDIQ  266 (655)
Q Consensus       191 ~l~~~~~q~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~---~~~~~~~g~N~FsDlt~eEf~~-~~~~~~~~~~~~~~  266 (655)
                      .+|+.|+++|+|.|.+.+|+..|+.||++|+++|++||++   +..+|++|+|+|+|||.+||++ +++.+....     
T Consensus         9 ~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~~~~~g~N~FaDlt~eEf~~~~~g~~~~~~-----   83 (314)
T 1by8_A            9 THWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPLS-----   83 (314)
T ss_dssp             HHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSEEECCCTTSSSCHHHHHHHSCCCCCCSC-----
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCcceEEcccccccCCHHHHHHHhccCCCCcc-----
Confidence            4699999999999999889999999999999999999985   3468999999999999999988 777543210     


Q ss_pred             CCCCCCCCCCCcchhhhhhhcccCCCCCCCCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHH
Q psy11694        267 PSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQ  346 (655)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q  346 (655)
                       .  .....        ....  ......||++||||++|+||||||||.||||||||++++||++++|+++.++.||+|
T Consensus        84 -~--~~~~~--------~~~~--~~~~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAFs~~~alE~~~~i~~g~~~~LSeq  150 (314)
T 1by8_A           84 -H--SRSND--------TLYI--PEWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQ  150 (314)
T ss_dssp             -C--CCSSS--------SSBC--CCCSSCCCSCCBSTTTTCSCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHH
T ss_pred             -c--ccCCc--------cccc--cccccCCCCeEeCCCCCCCCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCCcccCHH
Confidence             0  00000        0000  001123999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCCCCCCCCCcHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhC
Q psy11694        347 QLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATR  426 (655)
Q Consensus       347 ~l~dC~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~  426 (655)
                      +|+||+..+.||+||++..||+|+.+++||++|++|||.+..+  .|...+.. ..++|.+|..|+..++++||++|+++
T Consensus       151 ~lvdC~~~~~gC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~--~C~~~~~~-~~~~i~~~~~v~~~~~~~i~~al~~~  227 (314)
T 1by8_A          151 NLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEE--SCMYNPTG-KAAKCRGYREIPEGNEKALKRAVARV  227 (314)
T ss_dssp             HHHTTCTTSCGGGCCCSHHHHHHHHHTTCBCBTTTSCCCSSCC--CCCCCGGG-CCBCCSCEEECCSSCHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCCcCCCHHHHHHHHHHcCCcCcHhhCCCCCCCC--CcCCCCcc-ceeEECcEEEecCCCHHHHHHHHHHc
Confidence            9999998788999999999999998767999999999999887  89866543 56789999999988999999999999


Q ss_pred             CCeEEEEEcCC--cccccccEEe--------CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCCccccccc
Q psy11694        427 GPLSVGMNANG--LFYYSGGVID--------LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLEL  490 (655)
Q Consensus       427 gPV~v~i~~~~--~~~Y~~Gi~~--------~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~~  490 (655)
                      |||+|+|+++.  |++|++|||.        ++|||    ||+  |.+|||||||||++|||+|||||+|+.+..|++..
T Consensus       228 GPV~v~i~~~~~~f~~Y~~Gvy~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~  307 (314)
T 1by8_A          228 GPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIAN  307 (314)
T ss_dssp             CCEEEEECCCSHHHHTEEEECBCCTTCCSSCCCEEEEEEEEEEETTEEEEEEECSBTTTSTBTTEEEECCSSSCGGGTTS
T ss_pred             CCEEEEEEeChHHhhhccCceecCCCCCCCCCCeEEEEEEEeccCCceEEEEEcCCCCCcCcCCEEEEEcCCCCcCCccC
Confidence            99999999983  9999999996        69999    775  78999999999999999999999998655677766


Q ss_pred             cCCcc
Q psy11694        491 TGVLP  495 (655)
Q Consensus       491 ~gv~p  495 (655)
                      ....|
T Consensus       308 ~~~~p  312 (314)
T 1by8_A          308 LASFP  312 (314)
T ss_dssp             SCEEE
T ss_pred             eeEEe
Confidence            65544

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}

Probab=100.00  E-value=7.8e-65  Score=530.29  Aligned_cols=282  Identities=33%  Similarity=0.604  Sum_probs=241.4

Q ss_pred             chhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHhcC---CCCceeeeeCcCCCCChHHHHh-hcCCCCCCcccccC
Q psy11694        191 NLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSE---DSGTAVFGVNKFFDLSESDLQQ-LTGLNLDSTLEDIQ  266 (655)
Q Consensus       191 ~l~~~~~q~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~---~~~~~~~g~N~FsDlt~eEf~~-~~~~~~~~~~~~~~  266 (655)
                      .+|+.|+++|+|.|.+.+|+..|+.||++|+++|++||++   +..+|++|+|+|+|||.+||++ +++.+.....    
T Consensus        10 ~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~s~~~g~N~FaDlt~eEf~~~~~g~~~~~~~----   85 (315)
T 2c0y_A           10 HHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVMSLMSSLRVPSQW----   85 (315)
T ss_dssp             HHHHHHHHHHTCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCGGGGCCHHHHHHHTTSBCCCCGG----
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCcceEeccCccccCCHHHHHHHhcCCCCCccc----
Confidence            4699999999999988788899999999999999999985   3468999999999999999987 7765432100    


Q ss_pred             CCCCCCCCCCCcchhhhhhhcccCCCCCCCCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHH
Q psy11694        267 PSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQ  346 (655)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q  346 (655)
                        .. ...          ...   ....+||++||||++|+||||||||.||||||||++++||++++|+++.++.||+|
T Consensus        86 --~~-~~~----------~~~---~~~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAfs~~~alE~~~~i~~g~~~~LSeq  149 (315)
T 2c0y_A           86 --QR-NIT----------YKS---NPNRILPDSVDWREKGCVTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQ  149 (315)
T ss_dssp             --GS-CBC----------C---------CCCSCEETTTTTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHH
T ss_pred             --cC-Ccc----------ccC---cccCCCCCeEecCCCCCcCCCcCcccCCCcHHHHHHHHHHHHHHHHhCCCcCcCHH
Confidence              00 000          000   01246999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcc-C--CCCCCCCCcHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHH
Q psy11694        347 QLVDCD-M--SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWV  423 (655)
Q Consensus       347 ~l~dC~-~--~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l  423 (655)
                      +|+||+ .  .+.||+||++..|++|+.+++||++|++|||.+..+  .|...+.. ..++|.+|..++..++++||++|
T Consensus       150 ~lvdC~~~~~~~~gC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~--~C~~~~~~-~~~~i~~~~~v~~~~~~~i~~al  226 (315)
T 2c0y_A          150 NLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ--KCQYDSKY-RAATCSKYTELPYGREDVLKEAV  226 (315)
T ss_dssp             HHHHHSCGGGTCCGGGCBCHHHHHHHHHHHTCEEBTTTSCCCSSCC--CCCCCGGG-EEECCCEEEECCTTCHHHHHHHH
T ss_pred             HHHhhcccccCCCCCCCCCHHHHHHHHHHhCCcCchhcCCCccCCC--CcccCCcc-cccccCCeEEeCCCCHHHHHHHH
Confidence            999998 3  478999999999999998766999999999999887  89876544 57889999999988999999999


Q ss_pred             hhCCCeEEEEEcCC--cccccccEEe-------CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCCccccc
Q psy11694        424 ATRGPLSVGMNANG--LFYYSGGVID-------LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDL  488 (655)
Q Consensus       424 ~~~gPV~v~i~~~~--~~~Y~~Gi~~-------~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~  488 (655)
                      +++|||+|+|++..  |++|++|||.       ++|||    ||+  |.+|||||||||++||++|||||+|+.+..|++
T Consensus       227 ~~~GPV~v~i~~~~~~f~~Y~~Gvy~~~~c~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI  306 (315)
T 2c0y_A          227 ANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI  306 (315)
T ss_dssp             HHTCCEEEEECCCSHHHHTEEEEEECCTTCCSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGT
T ss_pred             HHcCCEEEEEecCchhhhccCCCcccCCCCCCcCCEEEEEEEEeecCCCcEEEEEcCCCCCcCCCcEEEEEcCCCCccCc
Confidence            99999999999983  9999999997       69999    775  789999999999999999999999986556777


Q ss_pred             cccCCcc
Q psy11694        489 ELTGVLP  495 (655)
Q Consensus       489 ~~~gv~p  495 (655)
                      ......|
T Consensus       307 ~~~~~~p  313 (315)
T 2c0y_A          307 ASFPSYP  313 (315)
T ss_dssp             TTSCEEE
T ss_pred             CceeEEe
Confidence            6665544

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1

Probab=100.00  E-value=2.6e-64  Score=527.46  Aligned_cols=282  Identities=32%  Similarity=0.587  Sum_probs=241.9

Q ss_pred             chhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeCcCCCCChHHHHh-hcCCCCCCcccccCCCC
Q psy11694        191 NLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQ-LTGLNLDSTLEDIQPSL  269 (655)
Q Consensus       191 ~l~~~~~q~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~~~~~g~N~FsDlt~eEf~~-~~~~~~~~~~~~~~~~~  269 (655)
                      .+|+.|+++|+|.|.+.+|+..|+.+|++|+++|++||++ +.+|++|+|+|+|||.+||++ +++.+...      +..
T Consensus        20 ~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~-~~~~~~g~N~FaDlt~eEf~~~~~g~~~~~------~~~   92 (322)
T 1pci_A           20 QLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKK-NNSYWLGLNEFADLSNDEFNEKYVGSLIDA------TIE   92 (322)
T ss_dssp             HHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHHHHHHTT-CCSEEECSCTTTTSCHHHHHHHHCCCBCCC------SSC
T ss_pred             HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc-CCceEEecCccccCCHHHHHHHhcCCCCcc------ccc
Confidence            5799999999999999889999999999999999999986 458999999999999999998 66654321      000


Q ss_pred             CCCCCCCCcchhhhhhhcccCCCCCCCCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHH
Q psy11694        270 QAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLV  349 (655)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~  349 (655)
                        ....       ...   ......+||++||||++|+||||||||.||||||||++++||++++|+++.++.||+|+|+
T Consensus        93 --~~~~-------~~~---~~~~~~~lP~~~DwR~~g~vt~VkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~lSeq~lv  160 (322)
T 1pci_A           93 --QSYD-------EEF---INEDIVNLPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELV  160 (322)
T ss_dssp             --CCCS-------EEC---CCCCCCCSCSCEETTTTTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHH
T ss_pred             --cccc-------ccc---ccccccCCCCeEecccCCCCCCccccccCCccHHHHHHHHHHHHHHHHcCCccccCHHHHH
Confidence              0000       000   0011247999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCCCCCCCCCcHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCe
Q psy11694        350 DCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPL  429 (655)
Q Consensus       350 dC~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV  429 (655)
                      ||+..+.||+||++..||+|+.++ ||++|++|||.+..+  .|.........++|.+|..|+..++++|+++|++ |||
T Consensus       161 dC~~~~~gC~GG~~~~a~~yi~~~-Gi~~e~~yPY~~~~~--~C~~~~~~~~~~~i~~~~~v~~~~e~~l~~~l~~-GPV  236 (322)
T 1pci_A          161 DCERRSHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQG--TCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPV  236 (322)
T ss_dssp             HSCTTSCGGGCBCHHHHHHHHHHH-CBCBTTTSCCCSSCC--CCTTTTCCSCCBCCCCEEECCSSBHHHHHHHHHH-SCE
T ss_pred             hhcCCCCCCCCCCHHHHHHHHHHh-CCCchhhCCCCCCCC--CCCCCCCCCceEEEeeEEEeCCCcHHHHHHHHHH-CCE
Confidence            999778899999999999999998 899999999999887  8987643335678999999998899999999996 999


Q ss_pred             EEEEEcC-C-cccccccEEe------CCceE----EcC--CccEEEEecCCCCccCCCceEEecccC---CccccccccC
Q psy11694        430 SVGMNAN-G-LFYYSGGVID------LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSG---NRTRDLELTG  492 (655)
Q Consensus       430 ~v~i~~~-~-~~~Y~~Gi~~------~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~---~~~~~~~~~g  492 (655)
                      +|+|+++ . |++|++|||.      ++|||    ||+  |.+|||||||||++|||+|||||+|+.   +..|++....
T Consensus       237 ~v~i~~~~~~f~~Y~~Gvy~~~c~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~n~CgI~~~~  316 (322)
T 1pci_A          237 SVVVESKGRPFQLYKGGIFEGPCGTKVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSS  316 (322)
T ss_dssp             EEEECTTCHHHHTEEEEEECCSCCSCCCEEEEEEEEEEETTEEEEEEECSBCSSSTBTTEEEEECCCSBSSCGGGGGGCC
T ss_pred             EEEEecccccccccCCeEeCCCCCCCCCEEEEEEEEeccCCccEEEEEeCCCCcccCCeEEEEEcCCCCCCCcCCcccce
Confidence            9999997 3 9999999997      69999    776  789999999999999999999999985   3567777666


Q ss_pred             Ccc
Q psy11694        493 VLP  495 (655)
Q Consensus       493 v~p  495 (655)
                      ..|
T Consensus       317 ~yp  319 (322)
T 1pci_A          317 YYP  319 (322)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            555

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*

Probab=100.00  E-value=8.1e-65  Score=530.37  Aligned_cols=279  Identities=33%  Similarity=0.599  Sum_probs=240.4

Q ss_pred             chhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHhcC---CCCceeeeeCcCCCCChHHHHh-hcCCCCCCcccccC
Q psy11694        191 NLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSE---DSGTAVFGVNKFFDLSESDLQQ-LTGLNLDSTLEDIQ  266 (655)
Q Consensus       191 ~l~~~~~q~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~---~~~~~~~g~N~FsDlt~eEf~~-~~~~~~~~~~~~~~  266 (655)
                      .+|+.|+++|+|.| +.+|+..|+.||++|+++|++||++   +..+|++|+|+|+|||.+||++ +++.+...      
T Consensus        10 ~~f~~~~~~~~k~Y-~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~~~~~g~N~F~Dlt~eEf~~~~~g~~~~~------   82 (316)
T 1cs8_A           10 AQWTKWKAMHNRLY-GMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRK------   82 (316)
T ss_dssp             HHHHHHHHHTTCCC-CTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCTTTTCCHHHHHHHHCCBCCCC------
T ss_pred             HHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHhhhccccCCcceEEccCccCCCCHHHHHHHhcCCCCCc------
Confidence            47999999999999 7778899999999999999999985   3569999999999999999998 77643220      


Q ss_pred             CCCCCCCCCCCcchhhhhhhcccCCCCCCCCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHH
Q psy11694        267 PSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQ  346 (655)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q  346 (655)
                      +.  .  ..     .   ...   ....+||++||||++|+||||||||.||||||||++++||++++|+++.++.||+|
T Consensus        83 ~~--~--~~-----~---~~~---~~~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~g~~~~LSeq  147 (316)
T 1cs8_A           83 PR--K--GK-----V---FQE---PLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQ  147 (316)
T ss_dssp             CS--C--CE-----E---CCC---CTTCCCCSCEEGGGGTCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHH
T ss_pred             cc--c--Cc-----c---ccC---ccccCCCCcEecCCCCCcCCCCcccCCccHHHHHHHHHHHHHHHHHcCCCcCcCHH
Confidence            00  0  00     0   000   11246999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccC--CCCCCCCCcHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHh
Q psy11694        347 QLVDCDM--SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVA  424 (655)
Q Consensus       347 ~l~dC~~--~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~  424 (655)
                      +|+||+.  .+.||+||++..||+|+.+++||++|++|||.+..+  .|...+.. ..++|.+|..|+. ++++||++|+
T Consensus       148 ~lvdC~~~~g~~gC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~--~C~~~~~~-~~~~i~~~~~v~~-~~~~ik~~l~  223 (316)
T 1cs8_A          148 NLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE--SCKYNPKY-SVANDAGFVDIPK-QEKALMKAVA  223 (316)
T ss_dssp             HHHHHCGGGTCCGGGCBCHHHHHHHHHHHTCEEBTTTSCCCSSCC--CCCCCGGG-EEECCCCEEECCS-CHHHHHHHHH
T ss_pred             HHHHhccccCCCCCCCCCHHHHHHHHHHhCCcCchhccCCCCCCC--CcCCCCcc-ceeEeccEEEeCC-CHHHHHHHHH
Confidence            9999985  378999999999999998666999999999999887  89876544 6788999999988 8999999999


Q ss_pred             hCCCeEEEEEcCC--cccccccEEe--------CCceE----Ec---C---CccEEEEecCCCCccCCCceEEecccCCc
Q psy11694        425 TRGPLSVGMNANG--LFYYSGGVID--------LNQRL----YG---T---SIPYWIVKNSWGSDWGEKVEDKVGSSGNR  484 (655)
Q Consensus       425 ~~gPV~v~i~~~~--~~~Y~~Gi~~--------~~Hav----yg---~---g~~yWivkNSWG~~WGe~Gy~~i~~~~~~  484 (655)
                      ++|||+|+|++..  |++|++|||.        ++|||    ||   +   +.+|||||||||++||++|||||+|+.+.
T Consensus       224 ~~GPV~v~i~~~~~~f~~Y~~Gvy~~~~c~~~~~~HaV~iVGygd~~~~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n  303 (316)
T 1cs8_A          224 TVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRN  303 (316)
T ss_dssp             HHCCEEEEECCCSHHHHTEEEEEECCTTCCSSCCCEEEEEEEEEEECCSSCCEEEEEEECSBCTTSTBTTEEEEECSSSS
T ss_pred             hcCCEEEEEecCChhhccccCceECCCCCCCCCCCEEEEEEEecCCcccCCCCcEEEEEcCCCCCcccCCEEEEECCCCC
Confidence            9999999999984  9999999996        69999    88   3   67999999999999999999999998756


Q ss_pred             cccccccCCcc
Q psy11694        485 TRDLELTGVLP  495 (655)
Q Consensus       485 ~~~~~~~gv~p  495 (655)
                      .|++......|
T Consensus       304 ~CgI~~~~~~p  314 (316)
T 1cs8_A          304 HCGIASAASYP  314 (316)
T ss_dssp             GGGTTTSCEEE
T ss_pred             ccCccceeeEe
Confidence            67776665544

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}

Probab=100.00  E-value=9.6e-65  Score=528.43  Aligned_cols=280  Identities=30%  Similarity=0.569  Sum_probs=239.7

Q ss_pred             chhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHhcC---CCCceeeeeCcCCCCChHHHHh-hcC-CCCCCccccc
Q psy11694        191 NLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSE---DSGTAVFGVNKFFDLSESDLQQ-LTG-LNLDSTLEDI  265 (655)
Q Consensus       191 ~l~~~~~q~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~---~~~~~~~g~N~FsDlt~eEf~~-~~~-~~~~~~~~~~  265 (655)
                      .+|+.|+++|+|+|.+.+|+..| .||++|+++|++||++   +..+|++|+|+|+|||.+||++ +++ ++....    
T Consensus         3 ~~f~~~~~~~~K~Y~~~~E~~~R-~iF~~N~~~I~~~N~~~~~g~~~~~~g~N~F~Dlt~eEf~~~~~g~~~~~~~----   77 (310)
T 2o6x_A            3 DLWHQWKRMYNKEYNGADDQHRR-NIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKAKYLTEMSRASD----   77 (310)
T ss_dssp             HHHHHHHHHHTCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHTTSSSEEECCCTTTTSCHHHHHHHHCCCCCCGGG----
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHH-HHHHHHHHHHHHHHhhhccCCCcEEEeccccCCCCHHHHHHHhcCCCCCccc----
Confidence            47999999999999988888999 9999999999999985   2568999999999999999998 776 432200    


Q ss_pred             CCCCCCCCCCCCcchhhhhhhcccCCCCCCCCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCH
Q psy11694        266 QPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSV  345 (655)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~  345 (655)
                        .  .....        ....   . ..+||++||||++|+||||||||.||||||||++++||++++|+++.++.||+
T Consensus        78 --~--~~~~~--------~~~~---~-~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAfa~~~alE~~~~i~~g~~~~LS~  141 (310)
T 2o6x_A           78 --I--LSHGV--------PYEA---N-NRAVPDKIDWRESGYVTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSE  141 (310)
T ss_dssp             --G--SCSSE--------ECCC--------CCSCEEGGGGTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHSSCCCBCH
T ss_pred             --c--cccCC--------cccc---c-cCCCCCeEecCcCCCCCCcccCCCCCccHHHHhHHHHHHHHHHHhCCCcCcCH
Confidence              0  00000        0000   0 12699999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccC--CCCCCCCCcHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHH
Q psy11694        346 QQLVDCDM--SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWV  423 (655)
Q Consensus       346 q~l~dC~~--~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l  423 (655)
                      |+|+||+.  .+.||+||++..||+|+. ++||++|++|||.+..+  .|...... ..++|.+|..|+..++++||++|
T Consensus       142 q~lvdC~~~~~~~gC~GG~~~~a~~yi~-~~Gi~~e~~yPY~~~~~--~C~~~~~~-~~~~i~~~~~v~~~~~~~i~~~l  217 (310)
T 2o6x_A          142 QQLVDCSRPWGNNGCGGGLMENAYQYLK-QFGLETESSYPYTAVEG--QCRYNKQL-GVAKVTGFYTVHSGSEVELKNLV  217 (310)
T ss_dssp             HHHHHHCGGGTCCGGGCCCHHHHHHHHT-TSCBCBTTTSCCCSSCC--CCCCCGGG-CCEEEEEEEEECSCCHHHHHHHH
T ss_pred             HHHHHhhhccCCCCCCCCCHHHHHHHHH-HCCcCchhcCCCCCCCC--CccCCCCC-CceEeCeEEEeCCCCHHHHHHHH
Confidence            99999985  378999999999999998 55999999999999887  89866543 56889999999877999999999


Q ss_pred             hhCCCeEEEEEcCC-cccccccEEe--------CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCCccccc
Q psy11694        424 ATRGPLSVGMNANG-LFYYSGGVID--------LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDL  488 (655)
Q Consensus       424 ~~~gPV~v~i~~~~-~~~Y~~Gi~~--------~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~  488 (655)
                      +++|||+|+|++.. |++|++|||.        ++|||    ||+  |.+|||||||||++||++|||||+|+.+..|++
T Consensus       218 ~~~GPV~v~i~~~~~f~~Y~~Gvy~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~Cgi  297 (310)
T 2o6x_A          218 GAEGPAAVAVDVESDFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGI  297 (310)
T ss_dssp             HHHCCEEEEECCCHHHHTEEEEEECCSSCCTTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGT
T ss_pred             HhcCCeEEEEecchhhhhCCCceecCCCCCCCCCCEEEEEEEEeccCCceEEEEEeCCCCccCCCcEEEEEcCCCCcCCc
Confidence            99999999999986 9999999996        68999    776  789999999999999999999999987567887


Q ss_pred             cccCCcc
Q psy11694        489 ELTGVLP  495 (655)
Q Consensus       489 ~~~gv~p  495 (655)
                      ......|
T Consensus       298 ~~~~~~p  304 (310)
T 2o6x_A          298 ASLASLP  304 (310)
T ss_dssp             TTSEEEE
T ss_pred             cceeeEE
Confidence            7666555

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1

Probab=100.00  E-value=1.1e-61  Score=504.52  Aligned_cols=274  Identities=23%  Similarity=0.424  Sum_probs=230.2

Q ss_pred             chhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeCcCCCCChHHHHh-hcCCCCCCcccccCCCC
Q psy11694        191 NLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQ-LTGLNLDSTLEDIQPSL  269 (655)
Q Consensus       191 ~l~~~~~q~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~~~~~g~N~FsDlt~eEf~~-~~~~~~~~~~~~~~~~~  269 (655)
                      .+|+.|+.+|+|.|.+.+|+..|+.||++|+++|++ |.    .   |+|+|+|||.+||++ +++++...  ... .  
T Consensus         6 ~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~-N~----~---g~N~F~Dlt~eEf~~~~~~~~~~~--~~~-~--   72 (312)
T 1xkg_A            6 KTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQS-NG----G---AINHLSDLSLDEFKNRFLMSAEAF--EHL-K--   72 (312)
T ss_dssp             CSHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH-HC----C---CCCTTTTSCHHHHHHHHSBCHHHH--HHH-H--
T ss_pred             HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh-cc----C---CCCcccCCCHHHHHHHhcCCCCcc--ccc-c--
Confidence            469999999999999988999999999999999999 74    1   999999999999999 77732110  000 0  


Q ss_pred             CCCCCCCCcchhhhhhhcc--cCCCCCCCCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHH
Q psy11694        270 QAPFSSNQTDTEMRAFQFN--SLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQ  347 (655)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~--~~~~~~~lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~  347 (655)
                                 ........  ......+||++||||++|+||||||||.||||||||++++||++++|+++..+.||+|+
T Consensus        73 -----------~~~~~~~~~~~~~~~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~g~~~~LSeq~  141 (312)
T 1xkg_A           73 -----------TQFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQE  141 (312)
T ss_dssp             -----------HHHC-----CBCCCCSCCCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHH
T ss_pred             -----------CCcccccccccccccccCCCccccccCCCcCCccccCCCCccHHHHHHHHHHHHHHHHhCCCCCcCHHH
Confidence                       00000000  00012379999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCCCCCCCCCcHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhh-C
Q psy11694        348 LVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVAT-R  426 (655)
Q Consensus       348 l~dC~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~-~  426 (655)
                      |+||+ ...||+||++..||+|+.+. ||++|++|||.+..+  .|. .... ..++|.+|..|+..++++||++|++ +
T Consensus       142 lvdC~-~~~GC~GG~~~~a~~yi~~~-Gi~~e~~yPY~~~~~--~C~-~~~~-~~~~i~~y~~v~~~~~~~ik~al~~~~  215 (312)
T 1xkg_A          142 LVDCA-SQHGCHGDTIPRGIEYIQHN-GVVQESYYRYVAREQ--SCR-RPNA-QRFGISNYCQIYPPNANKIREALAQTH  215 (312)
T ss_dssp             HHHHT-CSSTTBCCCHHHHHHHHHHH-CEEBGGGSCCCSSCC--CCC-CCSS-CEECCSEEEECCSCCHHHHHHHHHHHC
T ss_pred             HHhcc-CCCCCCCCCHHHHHHHHHHc-CCCccccCCccCCCC--CCC-CCCC-ceEEEeeEEEeCCCCHHHHHHHHHhcC
Confidence            99998 22899999999999999985 999999999999887  898 4433 5789999999997799999999999 9


Q ss_pred             CCeEEEEEcC---CcccccccEEe----C----CceE----EcC--CccEEEEecCCCCccCCCceEEecccCCcccccc
Q psy11694        427 GPLSVGMNAN---GLFYYSGGVID----L----NQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLE  489 (655)
Q Consensus       427 gPV~v~i~~~---~~~~Y~~Gi~~----~----~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~  489 (655)
                      |||+|+|+++   .|++|++|||.    .    +|||    ||+  |.+|||||||||++||++|||||+|+ ...|++.
T Consensus       216 GPV~v~i~~~~~~~f~~Y~~GVy~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~-~n~CgI~  294 (312)
T 1xkg_A          216 SAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAAN-IDLMMIE  294 (312)
T ss_dssp             CCEEEEEEESCHHHHHTCCSSSCBCCCCSSCCEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECS-SCGGGTT
T ss_pred             CCEEEEEEecccccccccCCcEEcCCCCCCCcCceEEEEEEEeccCCceEEEEEeCCCCcccCCcEEEEEcC-CCccccc
Confidence            9999999998   58999999997    2    6999    776  78999999999999999999999998 4457776


Q ss_pred             ccCCcc
Q psy11694        490 LTGVLP  495 (655)
Q Consensus       490 ~~gv~p  495 (655)
                      .....|
T Consensus       295 ~~~~~~  300 (312)
T 1xkg_A          295 EYPYVV  300 (312)
T ss_dssp             TCCEEE
T ss_pred             ceeEEe
Confidence            665555

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*

Probab=100.00  E-value=3.2e-57  Score=489.29  Aligned_cols=264  Identities=26%  Similarity=0.456  Sum_probs=172.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCceeee-eCcCCCCChHHHHh-hcCCCCCCcccccCCCCCCCCCCCCcchhhhhh
Q psy11694        208 EDLLRRHENFVTNVEKAEDYQSEDSGTAVFG-VNKFFDLSESDLQQ-LTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAF  285 (655)
Q Consensus       208 ~E~~~R~~iF~~n~~~I~~~N~~~~~~~~~g-~N~FsDlt~eEf~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (655)
                      .+...|+.||++|+++|++||++. .+|+++ +|+|+|||.+||++ +++.+....    .+.   ....       ...
T Consensus       135 ~~~~~R~~if~~N~~~I~~~N~~~-~~~~~~~~n~faDlT~eEf~~~~~~~~~~~~----~~~---~~~~-------~~~  199 (441)
T 3pdf_A          135 SQEKYSNRLYKYDHNFVKAINAIQ-KSWTATTYMEYETLTLGDMIRRSGGHSRKIP----RPK---PAPL-------TAE  199 (441)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHccC-CceEeecccccccCCHHHHHHHhCCCccccc----ccc---cCcc-------ccc
Confidence            355789999999999999999875 489998 89999999999999 555432200    000   0000       000


Q ss_pred             hcccCCCCCCCCCceecCCCC---CCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCc--CCCHHHHHHccCCCCCCCC
Q psy11694        286 QFNSLRHGDDLPEAFDWRAEG---VISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLT--ELSVQQLVDCDMSNGGCNG  360 (655)
Q Consensus       286 ~~~~~~~~~~lP~~~Dwr~~g---~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~--~lS~q~l~dC~~~~~gC~G  360 (655)
                         ......+||++||||+++   +||||||||.||||||||++++||++++|+++..+  .||+|+|+||+..+.||+|
T Consensus       200 ---~~~~~~~lP~s~DwR~~~g~~~VtpVkdQG~CGSCWAFsa~~alE~~~~i~tg~~~~~~LSeQ~LvdC~~~~~GC~G  276 (441)
T 3pdf_A          200 ---IQQKILFLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEG  276 (441)
T ss_dssp             ---------CCCSCEETTCBTTBCCSCCCCBCTTSBCHHHHHHHHHHHHHHHHHHTTSCCCCBCHHHHHHHCTTSCTTBC
T ss_pred             ---cccccccCCCCEECCcCCCCCccCcccccCCCchHHHHHHHHHHHHHHHHhccCCCccccCHHHHHhhccCCCCCCC
Confidence               011235799999999964   89999999999999999999999999999998764  5999999999988899999


Q ss_pred             CcHHHH-HHHHHHcCCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcC----CCCHHHHHHHHhhCCCeEEEEEc
Q psy11694        361 GRMDDA-LQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIP----YGEEEEMKKWVATRGPLSVGMNA  435 (655)
Q Consensus       361 G~~~~a-~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~----~~~~~~ik~~l~~~gPV~v~i~~  435 (655)
                      |++..+ ++|+.++ ||++|++|||.+..+  .|...... ..+.+.+|..++    ..++++||.+|+++|||+|+|++
T Consensus       277 G~~~~aa~~yi~~~-Gi~tE~~yPY~~~~~--~C~~~~~~-~~~~~~~y~~v~~~~~~~~e~~ik~al~~~GPVsvai~a  352 (441)
T 3pdf_A          277 GFPYLIAGKYAQDF-GLVEEACFPYTGTDS--PCKMKEDC-FRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEV  352 (441)
T ss_dssp             CCHHHHTTHHHHHT-CBCBGGGSCCCSSCC--CSCCCSSC-CCBCEEEEEETTSSTTCCCHHHHHHHHHHHCCEEEEECC
T ss_pred             CchhHHHHHHHHhc-CCCcHHHeeecccCC--CCCCcccc-ceeeeccEEEeCCccCCCcHHHHHHHHHHCCCeEEEEEe
Confidence            999997 8999887 999999999999887  89875544 556788888886    35899999999999999999999


Q ss_pred             CC-cccccccEEe-------------CCceE----EcC----CccEEEEecCCCCccCCCceEEecccCCccccccccCC
Q psy11694        436 NG-LFYYSGGVID-------------LNQRL----YGT----SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGV  493 (655)
Q Consensus       436 ~~-~~~Y~~Gi~~-------------~~Hav----yg~----g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~~~gv  493 (655)
                      .. |++|++|||.             ++|||    ||+    |.+|||||||||++|||+|||||+|+.| .|++....+
T Consensus       353 ~~~F~~Y~sGVy~~~~~~~~~~~~~~~~HaV~iVGyG~~~~~G~~YWIVkNSWG~~WGe~GYfri~rg~n-~CGI~s~~~  431 (441)
T 3pdf_A          353 YDDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTD-ECAIESIAV  431 (441)
T ss_dssp             CGGGGGCCSSEECCC---CCCCCCCCCCEEEEEEEEEECTTTCCEEEEEECSBCTTSTBTTEEEEECSSC-GGGTTSCCE
T ss_pred             cccccccCCceEecCCCCcccCCCCcCCeEEEEEEecccCCCCceEEEEEcCCCCCcCCCeEEEEEcCCC-ccCCCCceE
Confidence            86 9999999995             58999    774    6799999999999999999999999865 477765554


Q ss_pred             c
Q psy11694        494 L  494 (655)
Q Consensus       494 ~  494 (655)
                      .
T Consensus       432 a  432 (441)
T 3pdf_A          432 A  432 (441)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*

Probab=100.00  E-value=2.1e-56  Score=467.67  Aligned_cols=262  Identities=22%  Similarity=0.396  Sum_probs=166.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCceeeeeC-cCCCCChHHHHhhcCCCCCCcccccCCCCCCCCCCCCcchhhhhhhccc
Q psy11694        211 LRRHENFVTNVEKAEDYQSEDSGTAVFGVN-KFFDLSESDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNS  289 (655)
Q Consensus       211 ~~R~~iF~~n~~~I~~~N~~~~~~~~~g~N-~FsDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (655)
                      +.|+..+..+.++|+++|+.++.+|++|+| +|+|||.+||+++++.......    .+ ......      ......  
T Consensus         2 ~~~~~a~~~~~~~i~~~N~~~~~~~~~~~n~~f~dlt~eE~~~~~g~~~~~~~----~~-~~~~~~------~~~~~~--   68 (325)
T 3hhi_A            2 LVAEDAPVLSKAFVDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNNN----AS-ILPKRR------FTEEEA--   68 (325)
T ss_dssp             ----------------------------------------------------------C-CSCBCC------CCHHHH--
T ss_pred             CcccccccccHHHHHHHHhCCCCceEEecccccccCCHHHHHHHhCCCCCCcc----cc-cccCcc------cccccc--
Confidence            467788888999999999876679999999 8999999999987664322000    00 000000      000000  


Q ss_pred             CCCCCCCCCceecCCC----CCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCC-CcCCCHHHHHHccC-CCCCCCCCcH
Q psy11694        290 LRHGDDLPEAFDWRAE----GVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNS-LTELSVQQLVDCDM-SNGGCNGGRM  363 (655)
Q Consensus       290 ~~~~~~lP~~~Dwr~~----g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~-~~~lS~q~l~dC~~-~~~gC~GG~~  363 (655)
                         ..+||++||||++    |.||||||||.||||||||++++||++++|+++. ++.||+|+|+||+. .+.||+||++
T Consensus        69 ---~~~lP~s~DwR~~w~~~g~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~~~~~~~LSeQ~LvdC~~~~~~GC~GG~~  145 (325)
T 3hhi_A           69 ---RAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGDGCNGGDP  145 (325)
T ss_dssp             ---HCCCCSCEEHHHHSTTCTTTTCCCBCCSSBCHHHHHHHHHHHHHHHHTSSCSSCCBCHHHHHHHCGGGBCTTBCBCH
T ss_pred             ---ccCCCCcEehhHhcCCCCccccccCCCCccccHHHHHHHHHHHHHHHHhCCCccccCHHHHHHhccCCCCCCCCCCH
Confidence               2479999999997    8999999999999999999999999999999987 89999999999986 4689999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCC-CC-----C---CCCccccC-------------CC--CCceeeeeceEEcCCCCHHHH
Q psy11694        364 DDALQYIIDNGGVVSDQAYPYK-AS-----E---SERGCLVG-------------EE--EGFKVKVKEYSRIPYGEEEEM  419 (655)
Q Consensus       364 ~~a~~~~~~~~Gi~~e~~yPY~-~~-----~---~~~~C~~~-------------~~--~~~~~~i~~~~~v~~~~~~~i  419 (655)
                      ..||+|+.++ ||++|++|||. +.     .   ....|...             ..  ......+..|. +  .++++|
T Consensus       146 ~~A~~yi~~~-Gi~~e~~yPY~~~~c~~~~~~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~y~-v--~~~~~i  221 (325)
T 3hhi_A          146 DRAWAYFSST-GLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPVVNYRSWTSYA-L--QGEDDY  221 (325)
T ss_dssp             HHHHHHHHHT-CBCBTTTSCCSSCCCBSSSCCTTCCCBGGGCCCCCCCCCSSCSSTTSCCCCBCEEEEEE-E--CSHHHH
T ss_pred             HHHHHHHHHh-CCCcccccCCccccccccccccccCCCCCCcccCCcchhhcccccccccceEEeecceE-e--CCHHHH
Confidence            9999999998 99999999998 32     0   01255510             00  00223456776 4  589999


Q ss_pred             HHHHhhCCCeEEEEEcCC-cccccccEEe-------CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCCcc
Q psy11694        420 KKWVATRGPLSVGMNANG-LFYYSGGVID-------LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNRT  485 (655)
Q Consensus       420 k~~l~~~gPV~v~i~~~~-~~~Y~~Gi~~-------~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~  485 (655)
                      |++|+++|||+|+|+++. |++|++|||.       ++|||    ||+  |.+|||||||||++|||+|||||+|+.| .
T Consensus       222 ~~~i~~~GPV~v~i~~~~~f~~Y~~GVy~~~~~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~GY~~i~rg~n-~  300 (325)
T 3hhi_A          222 MRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSS-E  300 (325)
T ss_dssp             HHHHHHHCCEEEEEEEEHHHHTCCSSEECCCSCCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSC-G
T ss_pred             HHHHHHCCCEEEEEEeccccccccCceecCCCCCCCCCEEEEEEEEEecCCceEEEEEeCCCCCcccCCEEEEEcCCC-e
Confidence            999999999999999976 9999999997       58999    776  8899999999999999999999999765 4


Q ss_pred             ccccccCC
Q psy11694        486 RDLELTGV  493 (655)
Q Consensus       486 ~~~~~~gv  493 (655)
                      |++....+
T Consensus       301 CGI~~~~~  308 (325)
T 3hhi_A          301 CGIEDGGS  308 (325)
T ss_dssp             GGTTSCEE
T ss_pred             ecCccceE
Confidence            66665544

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A

Probab=100.00  E-value=5.3e-53  Score=441.31  Aligned_cols=247  Identities=28%  Similarity=0.518  Sum_probs=192.0

Q ss_pred             HHHHHHHHhcCCCCceeeeeCcCCCCChHHHHhhcCCCCCCcccccCCCCCCCCCCCCcchhhhhhhcccCCCCCCCCCc
Q psy11694        220 NVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEA  299 (655)
Q Consensus       220 n~~~I~~~N~~~~~~~~~g~N~FsDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~  299 (655)
                      +.++|++||+.+ .+|++|+| |+|+|.||++.++|.+....      .  ..  .     .   ..   .....+||++
T Consensus        11 ~~~~i~~~N~~~-~~~~~~~n-f~~~~~e~~~~~lg~~~~~~------~--~~--~-----~---~~---~~~~~~lP~s   67 (317)
T 3pbh_A           11 SDELVNYVNKRN-TTWQAGHN-FYNVDMSYLKRLCGTFLGGP------K--PP--Q-----R---VM---FTEDLKLPAS   67 (317)
T ss_dssp             CHHHHHHHHHHT-CSEEECCC-CSSCCHHHHHHTCCBCTTCC------C--CS--E-----E---EC---CCSCCCCCSS
T ss_pred             cHHHHHHHHCCC-CCeEEeec-cccCCHHHHHHHcCCCCCcc------c--cC--c-----c---cc---cccccCCCCC
Confidence            346889999764 59999999 99999988888887543310      0  00  0     0   00   0113579999


Q ss_pred             eecCCC----CCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCC--CcCCCHHHHHHccC--CCCCCCCCcHHHHHHHHH
Q psy11694        300 FDWRAE----GVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNS--LTELSVQQLVDCDM--SNGGCNGGRMDDALQYII  371 (655)
Q Consensus       300 ~Dwr~~----g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~--~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~~~~  371 (655)
                      ||||++    +.|+||||||.||||||||++++||++++|+++.  ++.||+|+|+||+.  .+.||+||++..||+|+.
T Consensus        68 ~DwR~~~~~c~~vtpVkdQg~CGSCWAFsa~~ale~~~~i~~~~~~~~~LSeq~LvdC~~~~~~~GC~GG~~~~A~~yi~  147 (317)
T 3pbh_A           68 FDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWT  147 (317)
T ss_dssp             EEHHHHCTTCGGGTCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTSCCCCBCHHHHHHHSCTTTBCGGGCBCHHHHHHHHH
T ss_pred             EechhccCCCCCcCCccccCCccchHHHHHHHHHHHHHHHHhCCCCcccCCHHHHHHhccccCCCCCCCCCHHHHHHHHH
Confidence            999987    6899999999999999999999999999999864  79999999999986  468999999999999999


Q ss_pred             HcCCCCCCCCC-------CCCCCC-------CCCccccC---------CCCCc-------eeeeeceEEcCCCCHHHHHH
Q psy11694        372 DNGGVVSDQAY-------PYKASE-------SERGCLVG---------EEEGF-------KVKVKEYSRIPYGEEEEMKK  421 (655)
Q Consensus       372 ~~~Gi~~e~~y-------PY~~~~-------~~~~C~~~---------~~~~~-------~~~i~~~~~v~~~~~~~ik~  421 (655)
                      ++ ||++|.+|       ||....       ....|...         .....       .........++. ++++||+
T Consensus       148 ~~-Gi~te~~Y~~~~~c~PY~~~~c~~~~~~~~~~C~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~v~~-~e~~i~~  225 (317)
T 3pbh_A          148 RK-GLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSN-SEKDIMA  225 (317)
T ss_dssp             HT-CEEBBCSTTCCCBSSCCCSCCCCCCCTTCCSCCCSCCCCCCCCCSCCSSCCSCGGGSEECBCCCEEECS-CHHHHHH
T ss_pred             Hh-CCCcchhccCCCCCcCcccCcccccccCcCCCCCCcCCCCcccccccCCCccceeeeeeeeeecccCCc-HHHHHHH
Confidence            98 99999888       998531       01145321         00000       011122234543 8999999


Q ss_pred             HHhhCCCeEEEEEcCC-cccccccEEe-------CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCCcccc
Q psy11694        422 WVATRGPLSVGMNANG-LFYYSGGVID-------LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRD  487 (655)
Q Consensus       422 ~l~~~gPV~v~i~~~~-~~~Y~~Gi~~-------~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~  487 (655)
                      +|+++|||+|+|++.. |++|++|||.       ++|||    ||+  |.+|||||||||++|||+|||||+|+.| .|+
T Consensus       226 ~i~~~GPV~v~i~~~~~f~~Y~~GVy~~~~~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~GY~ri~rg~n-~Cg  304 (317)
T 3pbh_A          226 EIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQD-HCG  304 (317)
T ss_dssp             HHHHHCCEEEEEEEEGGGGGEEEEEECCCSCCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSC-GGG
T ss_pred             HHHHCCCEEEEEEecccccCCCCcEEccCCCCCCCCEEEEEEEEEEeCCeeEEEEEcCCCCCcCCCcEEEEEcCCC-ccc
Confidence            9999999999999976 9999999997       48999    776  8899999999999999999999999765 466


Q ss_pred             ccccC
Q psy11694        488 LELTG  492 (655)
Q Consensus       488 ~~~~g  492 (655)
                      +....
T Consensus       305 I~~~~  309 (317)
T 3pbh_A          305 IESEV  309 (317)
T ss_dssp             TTTSC
T ss_pred             CCCce
Confidence            65443

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ...

Probab=100.00  E-value=5.3e-52  Score=412.31  Aligned_cols=197  Identities=39%  Similarity=0.746  Sum_probs=181.3

Q ss_pred             CCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHHcCC
Q psy11694        296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGG  375 (655)
Q Consensus       296 lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~G  375 (655)
                      ||++||||++|+|+||||||.||||||||++++||++++++++..+.||+|+|+||+..+.||+||++..|++|+.+++|
T Consensus         1 lP~~~Dwr~~~~v~pvkdQg~cGsCWAfa~~~~~e~~~~~~~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~~G   80 (215)
T 3kwz_A            1 APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRG   80 (215)
T ss_dssp             CTTCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHHTC
T ss_pred             CCCCCccCcCCCCCCcccCCCCcHHHHHHHHHHHHHHHHHHcCCCcccCHHHHHHhcCCCCCCCCCCHHHHHHHHHHhCC
Confidence            79999999999999999999999999999999999999999999999999999999988899999999999999988889


Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC--cccccccEEe------
Q psy11694        376 VVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVID------  447 (655)
Q Consensus       376 i~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~--~~~Y~~Gi~~------  447 (655)
                      +++|++|||.+..+  .|...+.. ...++.+|..++..++++||++|+++|||+++|++..  |++|++|||.      
T Consensus        81 i~~e~~yPY~~~~~--~C~~~~~~-~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~  157 (215)
T 3kwz_A           81 IDSEDAYPYVGQEE--SCMYNPTG-KAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNS  157 (215)
T ss_dssp             EEBTTTSCCCSSCC--CCCCCGGG-EEECCCCEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCT
T ss_pred             ccccccCCCccCCC--ccccCCCC-ceeEecceEEeCCCCHHHHHHHHHHCCCEEEEEeechhhhhcccCCeECCCCCCC
Confidence            99999999999887  89866554 6788999999998899999999999999999999983  9999999996      


Q ss_pred             --CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCCccccccccCCcc
Q psy11694        448 --LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLP  495 (655)
Q Consensus       448 --~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~~~gv~p  495 (655)
                        ++|||    ||+  +.+|||||||||++|||+|||||+|+.+..|++......|
T Consensus       158 ~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WG~~Gy~~i~r~~~n~Cgi~~~~~~p  213 (215)
T 3kwz_A          158 DNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFP  213 (215)
T ss_dssp             TCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTSSCEEE
T ss_pred             ChhhCEEEEEEEeccCCceEEEEECCcCcccccCCEEEEecCCCCccCcCCceeee
Confidence              68999    774  7899999999999999999999999875667877666554

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ...

Probab=100.00  E-value=3e-51  Score=406.44  Aligned_cols=194  Identities=37%  Similarity=0.832  Sum_probs=172.9

Q ss_pred             CCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHHc--
Q psy11694        296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDN--  373 (655)
Q Consensus       296 lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~--  373 (655)
                      ||++||||++|+||||||||.||||||||++++||++++|+++..+.||+|+|+||+..+.||+||++..||+|+.++  
T Consensus         1 lP~~~Dwr~~g~vtpVkdQg~cGsCWAfa~~~ale~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~y~~~~~~   80 (215)
T 3i06_A            1 APAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENN   80 (215)
T ss_dssp             CCSEEEGGGGTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHCSSSCGGGCCCHHHHHHHHHHHST
T ss_pred             CCCcccCCcCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHhccCCCCCCCCCCCHHHHHHHHHHhcc
Confidence            699999999999999999999999999999999999999999999999999999999888999999999999999885  


Q ss_pred             CCCCCCCCCCCCCCCC-CCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCCcccccccEEe-----
Q psy11694        374 GGVVSDQAYPYKASES-ERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVID-----  447 (655)
Q Consensus       374 ~Gi~~e~~yPY~~~~~-~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~~~~Y~~Gi~~-----  447 (655)
                      +|+++|++|||.+..+ ...|...... ..+++.+|..++. ++++||++|+++|||+++|++..|++|++|||.     
T Consensus        81 gGi~~e~~yPY~~~~~~~~~C~~~~~~-~~~~i~~~~~v~~-~~~~ik~~l~~~gPV~v~~~~~~f~~Y~~Giy~~~~~~  158 (215)
T 3i06_A           81 GAVYTEDSYPYASGEGISPPCTTSGHT-VGATITGHVELPQ-DEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSE  158 (215)
T ss_dssp             TEEEC-CCSCCCCTTSCCCCCCCSSCC-EEEEEEEEEECCS-CHHHHHHHHHHHCCEEEEECCTTGGGCCSSEECSCCCS
T ss_pred             ccccccCccCCcCCCCCCCccccCCcc-cceEecceEEeCC-hHHHHHHHHHHCCCEEEEEEchHHhcCCCCcccCCCCC
Confidence            5799999999997653 2368765543 5678999999986 899999999999999999999779999999997     


Q ss_pred             -CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCCccccccccC
Q psy11694        448 -LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTG  492 (655)
Q Consensus       448 -~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~~~g  492 (655)
                       ++|||    ||+  +.+|||||||||++|||+|||||+|+.| .|++....
T Consensus       159 ~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~rg~n-~cgi~~~~  209 (215)
T 3i06_A          159 QLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSN-QCLVKEEA  209 (215)
T ss_dssp             CCCEEEEEEEEESSSSSCEEEEECSBCTTSTBTTEEEEESSSC-GGGTTSSE
T ss_pred             ccCcEEEEEEEeccCCcEEEEEECCCCCCcccCceEEEecCCC-eecCCCce
Confidence             79999    776  7899999999999999999999999765 45655443

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1

Probab=100.00  E-value=1.4e-51  Score=408.39  Aligned_cols=195  Identities=34%  Similarity=0.750  Sum_probs=175.2

Q ss_pred             CCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHHcCC
Q psy11694        296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGG  375 (655)
Q Consensus       296 lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~G  375 (655)
                      ||++||||++|+|+||||||.||||||||++++||++++|+++..+.||+|+|+||+..+.||+||++..|++|+.+++|
T Consensus         1 lP~~~DwR~~~~vt~VkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~i~~~~G   80 (214)
T 1m6d_A            1 APPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDKACMGGLPSNAYSAIKNLGG   80 (214)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCSSSCTTBCCCHHHHHHHHHHHTC
T ss_pred             CCCcCcCCCCCCCCCCccCCCCchHHHHHHHHHHHHHHHHHcCCCcccCHHHHHHhcCCCCCCCCCCHHHHHHHHHHhcC
Confidence            69999999999999999999999999999999999999999999999999999999987889999999999999998779


Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCCcccccccEEe--------
Q psy11694        376 VVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVID--------  447 (655)
Q Consensus       376 i~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~~~~Y~~Gi~~--------  447 (655)
                      +++|++|||.+...  .|...... ..+++.++..++. ++++||++|+++|||+++|++..|++|++|||.        
T Consensus        81 i~~e~~yPY~~~~~--~C~~~~~~-~~~~i~~~~~i~~-~~~~ik~~l~~~GPV~v~i~~~~f~~Y~~Giy~~~~~~c~~  156 (214)
T 1m6d_A           81 LETEDDYSYQGHMQ--SCQFSAEK-AKVYIQDSVELSQ-NEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSP  156 (214)
T ss_dssp             BCBTTTSCCCSSCC--CCCCCGGG-CCBCCSEEEECCS-CHHHHHHHHHHHCCEEEEECTHHHHHCCSSEECCCGGGSCT
T ss_pred             cccccCcCcCCCCC--cCCCCccc-ceEEecCEEEeCh-HHHHHHHHHHhCCCEEEEEEechhhhcCCceecCCCCcCCC
Confidence            99999999998877  89866544 4677888888876 899999999999999999999879999999995        


Q ss_pred             --CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCCccccccccCCcc
Q psy11694        448 --LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLP  495 (655)
Q Consensus       448 --~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~~~gv~p  495 (655)
                        ++|||    ||+  +.+|||||||||++|||+|||||+|+.| .|++......|
T Consensus       157 ~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n-~Cgi~~~~~~~  211 (214)
T 1m6d_A          157 WLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSG-ACGVNTMASSA  211 (214)
T ss_dssp             TCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSC-GGGTTTTCEEE
T ss_pred             CcCCEEEEEEEEeecCCcEEEEEEeCCCCCcccCcEEEEEcCCC-ccccCceeEEE
Confidence              58999    776  7799999999999999999999999755 46665544333

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ...

Probab=100.00  E-value=2.4e-51  Score=408.51  Aligned_cols=197  Identities=43%  Similarity=0.831  Sum_probs=179.4

Q ss_pred             CCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHcc-C--CCCCCCCCcHHHHHHHHHH
Q psy11694        296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCD-M--SNGGCNGGRMDDALQYIID  372 (655)
Q Consensus       296 lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~-~--~~~gC~GG~~~~a~~~~~~  372 (655)
                      ||++||||++|+|+||||||.||||||||++++||++++|+++..+.||+|+|+||+ .  .+.||+||++..|++|+.+
T Consensus         2 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~~gC~GG~~~~a~~~~~~   81 (218)
T 3ovx_A            2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIID   81 (218)
T ss_dssp             CCSCEEGGGGTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHSCGGGTCCGGGCCCHHHHHHHHHH
T ss_pred             CCCCCCcccCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHcCCccccCHHHheeccCCcCCCCCCCCCCHHHHHHHHHH
Confidence            799999999999999999999999999999999999999999999999999999998 2  4789999999999999987


Q ss_pred             cCCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC--cccccccEEe---
Q psy11694        373 NGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVID---  447 (655)
Q Consensus       373 ~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~--~~~Y~~Gi~~---  447 (655)
                      ++|+++|++|||.+..+  .|...... ...++.+|..++..++++||++|+++|||+++|++..  |++|++|||.   
T Consensus        82 ~~Gi~~e~~yPY~~~~~--~C~~~~~~-~~~~i~~~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~~~  158 (218)
T 3ovx_A           82 NKGIDSDASYPYKAMDQ--KCQYDSKY-RAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPS  158 (218)
T ss_dssp             HTCEEBTTTSCCCSSCC--CCCCCGGG-EEECCCEEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHHCCSSEECCTT
T ss_pred             hCCcCcccccCccCCCC--cccCCCcc-ceeeeccEEEeCCCCHHHHHHHHHhcCCEEEEEEecchhhhcccCceecCCC
Confidence            66999999999999887  89876654 6788999999988899999999999999999999975  9999999997   


Q ss_pred             ----CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCCccccccccCCcc
Q psy11694        448 ----LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLP  495 (655)
Q Consensus       448 ----~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~~~gv~p  495 (655)
                          ++|||    ||+  +.+|||||||||++|||+|||||+|+.+..|++......|
T Consensus       159 ~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~n~cgi~~~~~~p  216 (218)
T 3ovx_A          159 CTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP  216 (218)
T ss_dssp             CCSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEE
T ss_pred             CCcccCcEEEEEEEeccCCceEEEEECCCCCccccCCEEEEecCCCCcccccCceeee
Confidence                78999    776  7899999999999999999999999875567777665544

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ...

Probab=100.00  E-value=4.9e-51  Score=403.79  Aligned_cols=196  Identities=33%  Similarity=0.620  Sum_probs=174.9

Q ss_pred             CCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHHcCC
Q psy11694        296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGG  375 (655)
Q Consensus       296 lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~G  375 (655)
                      ||++||||++++|+||||||.||||||||++++||++++|+++..+.||+|+|+||+..+.||+||++..||+|+.++ |
T Consensus         1 lP~~~DwR~~~~v~pVkdQg~CGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~yi~~~-G   79 (212)
T 2cio_A            1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWSALQLVAQY-G   79 (212)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHT-C
T ss_pred             CCCcccCCCCCCCCCCccCCccchHHHHHHHHHHHHHHHHhcCCccccCHHHHHHhCCCCCCCCCCCHHHHHHHHHHh-C
Confidence            699999999999999999999999999999999999999999999999999999999778899999999999999998 8


Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC--cccccccEEe------
Q psy11694        376 VVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVID------  447 (655)
Q Consensus       376 i~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~--~~~Y~~Gi~~------  447 (655)
                      +++|++|||.+...  .|.........+++.+|..++..++++||++|++ |||+++|++..  |++|++|||.      
T Consensus        80 i~~e~~yPY~~~~~--~C~~~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~~~~~~  156 (212)
T 2cio_A           80 IHYRNTYPYEGVQR--YCRSREKGPYAAKTDGVRQVQPYNEGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIFVGPCGNK  156 (212)
T ss_dssp             BCBTTTSCCCSSCC--CCCTTTTCSCSBCCSEEEECCSSCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCCCCSC
T ss_pred             cCcccccCCcCCCC--CcCCCCCCCceEEEeeEEEeCCccHHHHHHHHHh-CCEEEEEeccCcchhhcCCceecCCCCCC
Confidence            99999999998877  8886653225678999999988789999999996 99999999974  9999999996      


Q ss_pred             CCceE--EcCCccEEEEecCCCCccCCCceEEecccC---CccccccccCCcc
Q psy11694        448 LNQRL--YGTSIPYWIVKNSWGSDWGEKVEDKVGSSG---NRTRDLELTGVLP  495 (655)
Q Consensus       448 ~~Hav--yg~g~~yWivkNSWG~~WGe~Gy~~i~~~~---~~~~~~~~~gv~p  495 (655)
                      ++|||  .|.|.+|||||||||++|||+|||||+|+.   +..|++......|
T Consensus       157 ~~HaV~iVGyg~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p  209 (212)
T 2cio_A          157 VDHAVAAVGYGPNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYP  209 (212)
T ss_dssp             CCEEEEEEEEETTEEEEECSBCTTSTBTTEEEEECSSSCTTCGGGTTSCCEEE
T ss_pred             CCEEEEEEEecCCeEEEEeCCCCCcccCcEEEEEcCCCCCCCccCcccceeEE
Confidence            69999  444449999999999999999999999985   3457776655444

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*

Probab=100.00  E-value=5e-51  Score=402.28  Aligned_cols=194  Identities=41%  Similarity=0.769  Sum_probs=174.8

Q ss_pred             CCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHHcCC
Q psy11694        296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGG  375 (655)
Q Consensus       296 lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~G  375 (655)
                      ||++||||++++|+||||||.||||||||++++||++++|+++..+.||+|+|+||+..+.||+||++..|++|+.+++|
T Consensus         1 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~y~~~~~G   80 (208)
T 1o0e_A            1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKNHGCLGGAFVFAYQYIINNGG   80 (208)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHHTC
T ss_pred             CCCcCcCCCCCCCCCCccCCCCccHHHHHHHHHHHHHHHHhcCCceecCHHHhhhhcCCCCCCCCCCHHHHHHHHHHhCC
Confidence            69999999999999999999999999999999999999999999999999999999977899999999999999998779


Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC--cccccccEEe------
Q psy11694        376 VVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVID------  447 (655)
Q Consensus       376 i~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~--~~~Y~~Gi~~------  447 (655)
                      +++|++|||.+...  .|..  .. ..+++.+|..++..++++||++|++ |||+++|++..  |++|++|||.      
T Consensus        81 i~~e~~yPY~~~~~--~C~~--~~-~~~~i~~~~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~~c~~~  154 (208)
T 1o0e_A           81 IDTQANYPYKAVQG--PCQA--AS-KVVSIDGYNGVPFCNEXALKQAVAV-QPSTVAIDASSAQFQQYSSGIFSGPCGTK  154 (208)
T ss_dssp             BCBTTTSCCCSSCC--CCCC--CC-CCBCCCEEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCCCCSC
T ss_pred             cCcccccCccCCCC--cCCC--CC-ceEEeCeEEEeCCCCHHHHHHHHHh-CCEEEEEEccCcccccccCceECCCCCCc
Confidence            99999999999877  8876  22 4678999999988889999999996 99999999974  9999999997      


Q ss_pred             CCceE--EcCCccEEEEecCCCCccCCCceEEecccC-CccccccccCCcc
Q psy11694        448 LNQRL--YGTSIPYWIVKNSWGSDWGEKVEDKVGSSG-NRTRDLELTGVLP  495 (655)
Q Consensus       448 ~~Hav--yg~g~~yWivkNSWG~~WGe~Gy~~i~~~~-~~~~~~~~~gv~p  495 (655)
                      ++|||  .|.|.+|||||||||++|||+|||||+|+. +..|++......|
T Consensus       155 ~~HaV~iVGyg~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~Cgi~~~~~~p  205 (208)
T 1o0e_A          155 LNHGVTIVGYQANYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYP  205 (208)
T ss_dssp             CCEEEEEEEECSSEEEEECSBCTTSTBTTEEEEECCSTTCGGGTTSSCEEE
T ss_pred             CCEEEEEEEeCCCeEEEEcCCCCcccCCcEEEEEcCCCCCcCCCcccceee
Confidence            69999  555459999999999999999999999986 3567776665544

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1

Probab=100.00  E-value=5.1e-51  Score=406.27  Aligned_cols=197  Identities=40%  Similarity=0.792  Sum_probs=177.5

Q ss_pred             CCCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHHcC
Q psy11694        295 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNG  374 (655)
Q Consensus       295 ~lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~  374 (655)
                      +||++||||++++|+||||||.||||||||++++||++++|+++..+.||+|+|+||+..+.||+||++..||+|+.+++
T Consensus         2 ~lP~~~DwR~~~~v~~VkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~y~~~~~   81 (221)
T 1cqd_A            2 DLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTANHGCRGGWMNPAFQFIVNNG   81 (221)
T ss_dssp             -CCSCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHHT
T ss_pred             CCCCcCcCCCCCCcCCcccCCCCccHHHHHHHHHHHHHHHHhcCCeeeeccceeEECCCCCCCCCCCCHHHHHHHHHHhC
Confidence            58999999999999999999999999999999999999999999999999999999997788999999999999999888


Q ss_pred             CCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC--cccccccEEe-----
Q psy11694        375 GVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVID-----  447 (655)
Q Consensus       375 Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~--~~~Y~~Gi~~-----  447 (655)
                      ||++|++|||.+...  .|...... ..++|.+|..++..++++||++|++ |||+|+|++..  |++|++|||.     
T Consensus        82 Gi~~e~~yPY~~~~~--~C~~~~~~-~~~~i~~y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~~~~~  157 (221)
T 1cqd_A           82 GINSEETYPYRGQDG--ICNSTVNA-PVVSIDSYENVPSHNEQSLQKAVAN-QPVSVTMDAAGRDFQLYRSGIFTGSCNI  157 (221)
T ss_dssp             SBCBTTTSCCCSSCC--CCCSSSCC-CSBCCSEEEECCSSCHHHHHHHHTT-SCEEEEECCCSHHHHTCCSSEECCCCCC
T ss_pred             CccccccCCccCCCC--CcCCCCCC-ceEEeccEEEeCCchHHHHHHHHHh-CCEEEEEeccCcccccccCccccCCCCC
Confidence            999999999999887  89865543 5678999999988789999999985 99999999983  9999999997     


Q ss_pred             -CCceE----EcC--CccEEEEecCCCCccCCCceEEecccC---CccccccccCCcc
Q psy11694        448 -LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSG---NRTRDLELTGVLP  495 (655)
Q Consensus       448 -~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~---~~~~~~~~~gv~p  495 (655)
                       ++|||    ||+  +.+|||||||||++|||+|||||+|+.   ...|++......|
T Consensus       158 ~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p  215 (221)
T 1cqd_A          158 SANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYP  215 (221)
T ss_dssp             CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEE
T ss_pred             cCCeEEEEEEEcccCCCcEEEEEeCCCCCcccCCEEEEEcCCCCCCcccceeeeeeEE
Confidence             79999    776  789999999999999999999999974   3457776665555

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ...

Probab=100.00  E-value=4.8e-51  Score=406.56  Aligned_cols=196  Identities=39%  Similarity=0.759  Sum_probs=176.8

Q ss_pred             CCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccC--CCCCCCCCcHHHHHHHHHHc
Q psy11694        296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM--SNGGCNGGRMDDALQYIIDN  373 (655)
Q Consensus       296 lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~~~~~~  373 (655)
                      ||++||||++|+|+||||||.||||||||++++||++++|++++.+.||+|+|+||+.  .+.||+||++..||+|+.++
T Consensus         1 lP~~~DwR~~~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~g~~gC~GG~~~~a~~y~~~~   80 (220)
T 2xu3_A            1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDN   80 (220)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTTTCCTTBCCCHHHHHHHHHHH
T ss_pred             CCCcEeCCCCCCCCCCcccCcccHHHHHHhHHHHHHHHHHhcCCceecCHHHHHhhccCCCCCCCCCCCHHHHHHHHHHh
Confidence            6999999999999999999999999999999999999999999999999999999985  37899999999999999755


Q ss_pred             CCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC--cccccccEEe----
Q psy11694        374 GGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVID----  447 (655)
Q Consensus       374 ~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~--~~~Y~~Gi~~----  447 (655)
                      .|+++|++|||.+...  .|...+.. ..+++++|..++. ++++||++|+++|||+++|++..  |++|++|||.    
T Consensus        81 ~Gi~~e~~yPY~~~~~--~C~~~~~~-~~~~i~~~~~v~~-~~~~ik~~l~~~GPV~v~~~~~~~~f~~Y~~Gvy~~~~c  156 (220)
T 2xu3_A           81 GGLDSEESYPYEATEE--SCKYNPKY-SVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC  156 (220)
T ss_dssp             TCEEBTTTSCCCSSCC--CCCCCGGG-EEECCSEEEECCS-CHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTC
T ss_pred             CCcccccccCCcccCc--CccCCCCC-cceeeeeEEEeCC-CHHHHHHHHHhcCCEEEEEeecCcccccccceEEcCCCC
Confidence            5999999999999887  89866543 6788999999987 89999999999999999999984  9999999996    


Q ss_pred             ----CCceE----Ec----C--CccEEEEecCCCCccCCCceEEecccCCccccccccCCcc
Q psy11694        448 ----LNQRL----YG----T--SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLP  495 (655)
Q Consensus       448 ----~~Hav----yg----~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~~~gv~p  495 (655)
                          ++|||    ||    +  +.+|||||||||++|||+|||||+|+.+..|++......|
T Consensus       157 ~~~~~~HaV~iVGygd~~~~~~g~~yWivkNSWG~~WG~~Gy~~i~~~~~n~Cgi~~~~~~p  218 (220)
T 2xu3_A          157 SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP  218 (220)
T ss_dssp             CSSCCCEEEEEEEEEECCCSSSCCEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEE
T ss_pred             CCCCCCeEEEEEEcCCccccCCCCcEEEEEeCCCCCcccCcEEEEecCCCCcCCccccceee
Confidence                68999    88    4  7899999999999999999999999875567776655444

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A*

Probab=100.00  E-value=5.1e-51  Score=404.82  Aligned_cols=196  Identities=36%  Similarity=0.703  Sum_probs=176.0

Q ss_pred             CCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHHcCC
Q psy11694        296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGG  375 (655)
Q Consensus       296 lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~G  375 (655)
                      ||++||||++|+|+||||||.||||||||++++||++++|+++..+.||+|+|+||+..+.||+||++..||+|+.++ |
T Consensus         1 lP~~~DwR~~~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~yi~~~-G   79 (216)
T 1ppo_A            1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKN-G   79 (216)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCSSSCTTBCCCHHHHHHHHHHH-C
T ss_pred             CCCcCcCCCCCCCCCCccCCcCccHHHHHHHHHHHHHHHHccCCceecCHHHHHhccCCCCCCCCCCHHHHHHHHHHh-C
Confidence            699999999999999999999999999999999999999999999999999999999777899999999999999998 8


Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcC-C-cccccccEEe------
Q psy11694        376 VVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNAN-G-LFYYSGGVID------  447 (655)
Q Consensus       376 i~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~-~-~~~Y~~Gi~~------  447 (655)
                      |++|++|||.+...  .|.........+++.+|..++..++++||++|++ |||+++|+++ . |++|++|||.      
T Consensus        80 i~~e~~yPY~~~~~--~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~-GPV~v~~~~~~~~f~~Y~~Giy~~~~~~~  156 (216)
T 1ppo_A           80 IHLRSKYPYKAKQG--TCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEGPCGTK  156 (216)
T ss_dssp             BCBTTTSCCCSSCC--CCCGGGCCSCCBCCCEEEECCSSCHHHHHHHHHH-SCEEEEECCCSHHHHHCCSSEECCSCCSC
T ss_pred             cCccccCCccCCCC--CcCCCCCCCceEEeccEEEECCCCHHHHHHHHHh-CCEEEEEecCChhhhhcCCceECCCCCCC
Confidence            99999999999877  8876543235678999999988889999999996 9999999996 3 9999999997      


Q ss_pred             CCceE----EcC--CccEEEEecCCCCccCCCceEEecccC---CccccccccCCcc
Q psy11694        448 LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSG---NRTRDLELTGVLP  495 (655)
Q Consensus       448 ~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~---~~~~~~~~~gv~p  495 (655)
                      ++|||    ||+  +.+|||||||||++|||+|||||+|+.   +..|++......|
T Consensus       157 ~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~n~Cgi~~~~~~p  213 (216)
T 1ppo_A          157 VDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYP  213 (216)
T ss_dssp             CCEEEEEEEEEEETTEEEEEEECSBCSSSTBTTEEEEECCCSSSSCGGGTTSCCEEE
T ss_pred             CCEEEEEEEeeccCCccEEEEEeCCCCCcccCcEEEEEcCCCCCCCcCccccceeeE
Confidence            69999    776  679999999999999999999999975   3457766655444

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1

Probab=100.00  E-value=3.1e-51  Score=405.73  Aligned_cols=196  Identities=33%  Similarity=0.673  Sum_probs=176.2

Q ss_pred             CCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHHcCC
Q psy11694        296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGG  375 (655)
Q Consensus       296 lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~G  375 (655)
                      ||++||||++|+||||||||.||||||||++++||++++|+++..+.||+|+|+||+..+.||+||++..|++|+.++ |
T Consensus         1 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~-G   79 (213)
T 3ioq_A            1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRSYGCRGGFPLYALQYVANS-G   79 (213)
T ss_dssp             CCSCEEGGGGTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHH-C
T ss_pred             CCCCCCcccCCCCCCCCcCCCChhHHHHHHHHHHHHHHHHHcCCCcccCHHHhhhhcCCCCCCCCCCHHHHHHHHHHc-C
Confidence            799999999999999999999999999999999999999999999999999999999888999999999999999999 9


Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcC-C-cccccccEEe------
Q psy11694        376 VVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNAN-G-LFYYSGGVID------  447 (655)
Q Consensus       376 i~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~-~-~~~Y~~Gi~~------  447 (655)
                      +++|++|||.+...  .|.........+++.+|..++..+++.|+++|. +|||+++|+++ . |++|++|||.      
T Consensus        80 i~~e~~yPY~~~~~--~C~~~~~~~~~~~i~~~~~v~~~~~~~~~~~~~-~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~  156 (213)
T 3ioq_A           80 IHLRQYYPYEGVQR--QCRASQAKGPKVKTDGVGRVPRNNEQALIQRIA-IQPVSIVVEAKGRAFQNYRGGIFAGPCGTS  156 (213)
T ss_dssp             EEBGGGSCCCSSCC--CCCGGGCCSCEECCCEEEECCSSCHHHHHHHHT-TSCEEEEECCCSHHHHTCCSSEECCSCCSC
T ss_pred             CCchhccCcCCCCC--CCCCCccCCceEEeccEEEeCCchHHHHHHHHH-hCCEEEEEEechhhhhhccCCeEcCCCCCc
Confidence            99999999999887  887644333678899999998877777777776 69999999998 4 9999999997      


Q ss_pred             CCceE--EcCCccEEEEecCCCCccCCCceEEecccCC---ccccccccCCcc
Q psy11694        448 LNQRL--YGTSIPYWIVKNSWGSDWGEKVEDKVGSSGN---RTRDLELTGVLP  495 (655)
Q Consensus       448 ~~Hav--yg~g~~yWivkNSWG~~WGe~Gy~~i~~~~~---~~~~~~~~gv~p  495 (655)
                      ++|||  .|.|.+|||||||||++|||+|||||+|+.+   ..|++......|
T Consensus       157 ~~HaV~iVGyg~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p  209 (213)
T 3ioq_A          157 IDHAVAAVGYGNDYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFP  209 (213)
T ss_dssp             CCEEEEEEEEETTEEEEECSBCTTSTBTTEEEEESSCSSTTCGGGTTSCCEEE
T ss_pred             cCceEEEEecCCCeEEEECCCCCCcccCCeEEEEcCCCCCCCcccccCcceEe
Confidence            79999  5555699999999999999999999999863   567777766655

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana}

Probab=100.00  E-value=5.8e-51  Score=403.61  Aligned_cols=196  Identities=34%  Similarity=0.735  Sum_probs=176.1

Q ss_pred             CCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHHcCC
Q psy11694        296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGG  375 (655)
Q Consensus       296 lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~G  375 (655)
                      ||++||||++|+|+||||||.||||||||++++||++++|+++..+.||+|+|+||+..+.||+||++..||+|+.++ |
T Consensus         1 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~y~~~~-G   79 (214)
T 2bdz_A            1 YPESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSHGCDGGYQTTSLQYVVDN-G   79 (214)
T ss_dssp             CCSCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCBCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHH-C
T ss_pred             CCCcEeCCCCCCCCCCccCCCCccHHHHHhHHHHHHHHHHhcCCccccCHHHHHhhcCCCCCCCCCCHHHHHHHHHHh-C
Confidence            699999999999999999999999999999999999999999999999999999999777899999999999999998 9


Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcC-C-cccccccEEe------
Q psy11694        376 VVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNAN-G-LFYYSGGVID------  447 (655)
Q Consensus       376 i~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~-~-~~~Y~~Gi~~------  447 (655)
                      +++|++|||.+...  .|.........+++.+|..++..++++||++|++ |||+++|++. . |++|++|||.      
T Consensus        80 i~~e~~yPY~~~~~--~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~-gPV~v~i~~~~~~f~~Y~~Giy~~~~~~~  156 (214)
T 2bdz_A           80 VHTEREYPYEKKQG--RCRAKDKKGPKVYITGYKYVPANDEISLIQAIAN-QPVSVVTDSRGRGFQFYKGGIYEGPCGTN  156 (214)
T ss_dssp             EEBTTTSCCCSSCC--CCCTTTCCSCEECCCEEEEECSSBHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCSCCSC
T ss_pred             CCccccCCCCCCCC--CCCCCCCCCceeeecCEEEeCCCcHHHHHHHHHh-CCEEEEEeeChhHhhcccCceecCCCCCC
Confidence            99999999999877  8987654335788999999988889999999996 9999999998 3 9999999997      


Q ss_pred             CCceE--EcCCccEEEEecCCCCccCCCceEEecccC---CccccccccCCcc
Q psy11694        448 LNQRL--YGTSIPYWIVKNSWGSDWGEKVEDKVGSSG---NRTRDLELTGVLP  495 (655)
Q Consensus       448 ~~Hav--yg~g~~yWivkNSWG~~WGe~Gy~~i~~~~---~~~~~~~~~gv~p  495 (655)
                      ++|||  .|.+.+|||||||||++|||+|||||+|+.   +..|++......|
T Consensus       157 ~~HaV~iVGyg~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p  209 (214)
T 2bdz_A          157 TDHAVTAVGYGKTYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFP  209 (214)
T ss_dssp             CCEEEEEEEECSSEEEEECSBCTTSTBTTEEEEECCCSBSSCGGGTTSCEEEE
T ss_pred             CCeEEEEEEcCCCeEEEEeCCCCCcccCCEEEEEcCCCCCCCcccccccceEE
Confidence            79999  555459999999999999999999999975   2457766555444

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1

Probab=100.00  E-value=8.7e-51  Score=402.65  Aligned_cols=195  Identities=39%  Similarity=0.755  Sum_probs=176.1

Q ss_pred             CCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHHcCC
Q psy11694        296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGG  375 (655)
Q Consensus       296 lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~G  375 (655)
                      ||++||||++++|+||||||.||||||||++++||++++|+++..+.||+|+|+||+..+.||+||++..||+|+.+++|
T Consensus         1 lP~~~DwR~~~~v~~VkdQg~cGsCWAfa~~~~~e~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~G   80 (215)
T 1iwd_A            1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTASHGCNGGWMNNAFQYIITNGG   80 (215)
T ss_dssp             CCSCEEGGGGTCSCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHHTC
T ss_pred             CCCcEeCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHhcCCccccChhHeEECcCCCCCCCCCCHHHHHHHHHHhCC
Confidence            69999999999999999999999999999999999999999999999999999999977889999999999999998779


Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC--cccccccEEe------
Q psy11694        376 VVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVID------  447 (655)
Q Consensus       376 i~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~--~~~Y~~Gi~~------  447 (655)
                      +++|++|||.+...  .|.....  ..++|.+|..++..++++||++|++ |||+++|++..  |++|++|||.      
T Consensus        81 i~~e~~yPY~~~~~--~C~~~~~--~~~~i~~~~~v~~~~~~~ik~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~~c~~~  155 (215)
T 1iwd_A           81 IDTQQNYPYSAVQG--SCKPYRL--RVVSINGFQRVTRNNESALQSAVAS-QPVSVTVEAAGAPFQHYSSGIFTGPCGTA  155 (215)
T ss_dssp             BCBTTTSCCCSSCC--CCCTTCC--CCBCCCEEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCCCCCC
T ss_pred             cccccccCccCCCC--CCCCCCC--ceEEeCcEEEeCCCcHHHHHHHHHh-CCEEEEEecCCcchhhcCCceECCCCCCc
Confidence            99999999999877  8876543  4678999999988789999999996 99999999985  9999999997      


Q ss_pred             CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCC---ccccccccCCcc
Q psy11694        448 LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGN---RTRDLELTGVLP  495 (655)
Q Consensus       448 ~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~---~~~~~~~~gv~p  495 (655)
                      ++|||    ||+  +.+|||||||||++|||+|||||+|+.+   ..|++......|
T Consensus       156 ~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p  212 (215)
T 1iwd_A          156 QNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYP  212 (215)
T ss_dssp             CCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEE
T ss_pred             CCEEEEEEEEeccCCccEEEEEeCCCCCcCCCcEEEEEcCCCCCCCCCCccccceee
Confidence            69999    775  7899999999999999999999999753   457766555444

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E*

Probab=100.00  E-value=9.3e-51  Score=403.52  Aligned_cols=196  Identities=40%  Similarity=0.760  Sum_probs=176.5

Q ss_pred             CCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHHcCC
Q psy11694        296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGG  375 (655)
Q Consensus       296 lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~G  375 (655)
                      ||++||||++|+|+||||||.||||||||++++||++++|+++..+.||+|+|+||+..+.||+||++..||+|+.++ |
T Consensus         1 lP~~~DwR~~~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~-G   79 (218)
T 1yal_A            1 YPQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSYGCKGGYQTTSLQYVANN-G   79 (218)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHH-C
T ss_pred             CCCcCcCCCCCCCCCCccCccchhHHHHHHHHHHHHHHHHhcCCccccCHHHHHHhcCCCCCCCCCCHHHHHHHHHHc-C
Confidence            699999999999999999999999999999999999999999999999999999999778999999999999999998 8


Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcC-C-cccccccEEe------
Q psy11694        376 VVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNAN-G-LFYYSGGVID------  447 (655)
Q Consensus       376 i~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~-~-~~~Y~~Gi~~------  447 (655)
                      +++|++|||.+...  .|.........++|.+|..++..++++||++|++ |||+++|+++ . |++|++|||.      
T Consensus        80 i~~e~~yPY~~~~~--~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~~~~~~  156 (218)
T 1yal_A           80 VHTSKVYPYQAKQY--KCRATDKPGPKVKITGYKRVPSNCETSFLGALAN-QPLSVLVEAGGKPFQLYKSGVFDGPCGTK  156 (218)
T ss_dssp             BCBTTTSCCCSSCC--CCCGGGCCSCCBCCSEEEECCSSBHHHHHHHHTT-SCEEEEECCCSHHHHTCCSSEECCSCCSC
T ss_pred             CCccccccccCCCC--CcccCcCCCceEEEeeEEEeCCCCHHHHHHHHHh-CCEEEEEeccchhccccCCceECCCCCCC
Confidence            99999999999877  8876543235678999999988889999999995 9999999997 3 9999999997      


Q ss_pred             CCceE----EcC--CccEEEEecCCCCccCCCceEEecccC---CccccccccCCcc
Q psy11694        448 LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSG---NRTRDLELTGVLP  495 (655)
Q Consensus       448 ~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~---~~~~~~~~~gv~p  495 (655)
                      ++|||    ||+  +.+|||||||||++|||+|||||+|+.   +..|++......|
T Consensus       157 ~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p  213 (218)
T 1yal_A          157 LDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYP  213 (218)
T ss_dssp             CCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCCSBSCCGGGTTSSCEEE
T ss_pred             CCEEEEEEEeeccCCccEEEEEeCCCCCcccCcEEEEECCCCCCCCccccccceeeE
Confidence            69999    776  689999999999999999999999975   3567776665555

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A*

Probab=100.00  E-value=6.6e-51  Score=405.87  Aligned_cols=196  Identities=37%  Similarity=0.736  Sum_probs=178.5

Q ss_pred             CCCceecCCCC-CCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccC--CCCCCCCCcHHHHHHHHHH
Q psy11694        296 LPEAFDWRAEG-VISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM--SNGGCNGGRMDDALQYIID  372 (655)
Q Consensus       296 lP~~~Dwr~~g-~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~~~~~  372 (655)
                      ||++||||++| +||||||||.||||||||++++||++++|+++..+.||+|+|+||+.  .+.||+||++..|++|+.+
T Consensus         1 lP~~~DwR~~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~~~   80 (220)
T 8pch_A            1 YPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRY   80 (220)
T ss_dssp             CCSCEEHHHHSSCSCCCCBCTTSCCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHGGGGTCCGGGCCCHHHHHHHHHH
T ss_pred             CCCCEecCcCCCcCCcccccCCCchHHHHHHHHHHHHHHHHHcCCCCCCCHHHHhhCcCccCCCCCCCCCHHHHHHHHHH
Confidence            79999999999 99999999999999999999999999999999999999999999985  3789999999999999998


Q ss_pred             cCCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC-cccccccEEe----
Q psy11694        373 NGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG-LFYYSGGVID----  447 (655)
Q Consensus       373 ~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~-~~~Y~~Gi~~----  447 (655)
                      ++|+++|++|||.+...  .|...+.. ..+++.+|..++..++++||++|+++|||+++|++.. |++|++|||.    
T Consensus        81 ~~Gi~~e~~yPY~~~~~--~C~~~~~~-~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~Y~~Giy~~~~~  157 (220)
T 8pch_A           81 NKGIMGEDTYPYKGQDD--HCKFQPDK-AIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSC  157 (220)
T ss_dssp             HTCEEBTTTSCCCSSCC--CCCCCGGG-EEECEEEEEECCTTCHHHHHHHHHHTCCEEEEECCCHHHHTCCSSEECCSSC
T ss_pred             cCCcCcccccCccCCCC--CCCCCCCc-ceEEeCCEEEeCCCCHHHHHHHHHhcCCEEEEEEeccchhhcCCCcccCCcC
Confidence            88999999999999877  89876554 6788999999988899999999999999999999996 9999999995    


Q ss_pred             ------CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCCccccccccCCcc
Q psy11694        448 ------LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLP  495 (655)
Q Consensus       448 ------~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~~~gv~p  495 (655)
                            ++|||    ||+  +.+|||||||||++|||+|||||+|+.| .|++......|
T Consensus       158 ~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n-~cgi~~~~~~~  216 (220)
T 8pch_A          158 HKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKN-MCGLAACASYP  216 (220)
T ss_dssp             CCSTTTCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSC-GGGTTTSCEEE
T ss_pred             CCCCCcCCcEEEEEEEEccCCeeEEEEECCCCcCcccCCEEEEEcCCC-ccccCCCceeE
Confidence                  58999    776  7899999999999999999999999765 47776665554

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A*

Probab=100.00  E-value=1.6e-50  Score=408.52  Aligned_cols=198  Identities=37%  Similarity=0.746  Sum_probs=176.9

Q ss_pred             CCCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHHcC
Q psy11694        295 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNG  374 (655)
Q Consensus       295 ~lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~  374 (655)
                      +||++||||++|+|+||||||.||||||||++++||++++|+++..+.||+|+|+||+..+.||+||++..||+|+.+++
T Consensus         1 ~lP~~~DwR~~g~vtpVkdQg~CGsCWAfa~~~~lE~~~~i~~g~~~~LS~q~lvdC~~~~~gC~GG~~~~a~~y~~~~~   80 (246)
T 2b1m_A            1 DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDESEGCYNGWHYQSFEWVVKHG   80 (246)
T ss_dssp             -CCSCEEGGGTTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSBTTTBCCHHHHHHHHHHTT
T ss_pred             CCCCcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhcCCCCCCCCCCHHHHHHHHHHhC
Confidence            48999999999999999999999999999999999999999999999999999999997778999999999999999888


Q ss_pred             CCCCCCCCCCCCCCCCCccccCCCCCceeeeece---EEcCCCCHHHHHHHHhh---CCCeEEEEEcCCcccccccEEe-
Q psy11694        375 GVVSDQAYPYKASESERGCLVGEEEGFKVKVKEY---SRIPYGEEEEMKKWVAT---RGPLSVGMNANGLFYYSGGVID-  447 (655)
Q Consensus       375 Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~---~~v~~~~~~~ik~~l~~---~gPV~v~i~~~~~~~Y~~Gi~~-  447 (655)
                      |+++|++|||.+...  .|...... ..+++.+|   ..++..++++||++|++   +|||+++|++..|++|++|||. 
T Consensus        81 Gi~~e~~yPY~~~~~--~C~~~~~~-~~~~i~~y~~~~~v~~~~~~~ik~~l~~~~~~GPV~v~i~~~~f~~Y~~Giy~~  157 (246)
T 2b1m_A           81 GIASEADYPYKARDG--KCKANEIQ-DKVTIDNYGVQILSNESTESEAESSLQSFVLEQPISVSIDAKDFHFYSGGIYDG  157 (246)
T ss_dssp             CBCBTTTSCCCSSCC--CCCGGGCC-CCBCCSEEEEEECCTTSCHHHHHHHHHHHHHHSCEEEEECCTTGGGCCSSEECC
T ss_pred             CcCccccccccCCCC--cCcCCCCC-CceeEcCcceeeecCCChHHHHHHHHHhhccCCCEEEEEEcchhhcccceeecC
Confidence            999999999999887  88765433 56788999   88887789999999998   5999999999449999999996 


Q ss_pred             --------CCceE----EcC--CccEEEEecCCCCccCCCceEEecccC---CccccccccCCcc
Q psy11694        448 --------LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSG---NRTRDLELTGVLP  495 (655)
Q Consensus       448 --------~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~---~~~~~~~~~gv~p  495 (655)
                              ++|||    ||+  +.+|||||||||++|||+|||||+|+.   +..|++......|
T Consensus       158 ~~c~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~n~CgI~~~~~~p  222 (246)
T 2b1m_A          158 GNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYP  222 (246)
T ss_dssp             TTCCSSCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCSSCTTCGGGTTSEEEEE
T ss_pred             CCCCCCCcCceEEEEEEEeccCCceEEEEEeCCCCcccCCcEEEEEcCCCCCCccccccceeeEE
Confidence                    58999    776  789999999999999999999999976   3457766555544

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1

Probab=100.00  E-value=3.3e-50  Score=402.39  Aligned_cols=198  Identities=39%  Similarity=0.800  Sum_probs=176.8

Q ss_pred             CCCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccC-CCCCCCCCcHHHHHHHHHHc
Q psy11694        295 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-SNGGCNGGRMDDALQYIIDN  373 (655)
Q Consensus       295 ~lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~-~~~gC~GG~~~~a~~~~~~~  373 (655)
                      +||++||||++|+|+||||||.||||||||++++||++++|+++..+.||+|+|+||+. .+.||+||++..||+|+.++
T Consensus         1 ~lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~~gC~GG~~~~a~~y~~~~   80 (229)
T 1s4v_A            1 TVPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQR   80 (229)
T ss_dssp             CCCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCSSCCTTBCBCHHHHHHHHHHH
T ss_pred             CCCCCEeCCCCCCCCCCccCccchHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHhhCCCCCCCCCCCCHHHHHHHHHHh
Confidence            48999999999999999999999999999999999999999999999999999999986 57899999999999999988


Q ss_pred             CCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcC-C-cccccccEEe----
Q psy11694        374 GGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNAN-G-LFYYSGGVID----  447 (655)
Q Consensus       374 ~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~-~-~~~Y~~Gi~~----  447 (655)
                      +|+++|++|||.+...  .|.........++|.+|..++..+++.|+++|++ |||+++|++. . |++|++|||.    
T Consensus        81 ~Gi~~e~~yPY~~~~~--~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~~c~  157 (229)
T 1s4v_A           81 GGITTEANYPYEAYDG--TCDVSKENAPAVSIDGHENVPENDENALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFTGSCG  157 (229)
T ss_dssp             TCBCBTTTSCCCSSCC--CCCHHHHTCCCBCCCEEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCCCC
T ss_pred             CCccccccCCccCCCC--CCCCCCCCCcEEEeeeEEEeCCccHHHHHHHHhc-CCEEEEEEeCcHHHhhCCCcEECCCCC
Confidence            8999999999999877  8875432224678999999988789999999996 9999999995 3 9999999997    


Q ss_pred             --CCceE----EcC---CccEEEEecCCCCccCCCceEEecccC---CccccccccCCcc
Q psy11694        448 --LNQRL----YGT---SIPYWIVKNSWGSDWGEKVEDKVGSSG---NRTRDLELTGVLP  495 (655)
Q Consensus       448 --~~Hav----yg~---g~~yWivkNSWG~~WGe~Gy~~i~~~~---~~~~~~~~~gv~p  495 (655)
                        ++|||    ||+   +.+|||||||||++|||+|||||+|+.   ...|++......|
T Consensus       158 ~~~~HaV~iVGyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p  217 (229)
T 1s4v_A          158 TELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYP  217 (229)
T ss_dssp             CCCCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEE
T ss_pred             CCCCeEEEEEEeccccCCCCEEEEEeCCCCCccCCcEEEEEcCCCCCCCcCcccccceee
Confidence              69999    775   679999999999999999999999985   3567777666555

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare}

Probab=100.00  E-value=2.8e-50  Score=408.93  Aligned_cols=199  Identities=41%  Similarity=0.841  Sum_probs=177.1

Q ss_pred             CCCCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccC-CCCCCCCCcHHHHHHHHHH
Q psy11694        294 DDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM-SNGGCNGGRMDDALQYIID  372 (655)
Q Consensus       294 ~~lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~-~~~gC~GG~~~~a~~~~~~  372 (655)
                      .+||++||||++|+|+||||||.||||||||++++||++++|+++..+.||+|+|+||+. .+.||+||++..||+|+.+
T Consensus         2 ~~lP~~~DwR~~g~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~LSeQ~lvdC~~~~~~GC~GG~~~~a~~yi~~   81 (262)
T 2fo5_A            2 SDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTADNDGCQGGLMDNAFEYIKN   81 (262)
T ss_dssp             -CCCSCEETTTTTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCSSCCGGGCBCHHHHHHHHHH
T ss_pred             CCCCCcccCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHhhcCCCCCCCCCCCHHHHHHHHHH
Confidence            368999999999999999999999999999999999999999999999999999999986 5789999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCCCccccCC--CCCc-eeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcC-C-cccccccEEe
Q psy11694        373 NGGVVSDQAYPYKASESERGCLVGE--EEGF-KVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNAN-G-LFYYSGGVID  447 (655)
Q Consensus       373 ~~Gi~~e~~yPY~~~~~~~~C~~~~--~~~~-~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~-~-~~~Y~~Gi~~  447 (655)
                      ++|+++|++|||.+..+  .|....  .... .++|.+|..++..++++|+++|++ |||+++|+++ . |++|++|||.
T Consensus        82 ~~Gi~~e~~yPY~~~~~--~C~~~~~~~~~~~~~~i~~y~~v~~~~e~~ik~al~~-GPV~v~i~~~~~~f~~Y~sGVy~  158 (262)
T 2fo5_A           82 NGGLITEAAYPYRAARG--TCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVAN-QPVSVAVEASGKAFMFYSEGVFT  158 (262)
T ss_dssp             TTCEEBTTTSCCCSSCC--CCCHHHHHHHCCCEECCCEEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEEC
T ss_pred             cCCcCchhcCCCcCccC--ccCCcccccCCceeEEeceEEEcCCchHHHHHHHHHh-CCEEEEEecChHHHhccCCceEC
Confidence            88999999999999877  887643  1214 688999999988789999999997 9999999997 3 9999999997


Q ss_pred             ------CCceE----EcC---CccEEEEecCCCCccCCCceEEecccCC---ccccccccCCcc
Q psy11694        448 ------LNQRL----YGT---SIPYWIVKNSWGSDWGEKVEDKVGSSGN---RTRDLELTGVLP  495 (655)
Q Consensus       448 ------~~Hav----yg~---g~~yWivkNSWG~~WGe~Gy~~i~~~~~---~~~~~~~~gv~p  495 (655)
                            ++|||    ||+   |.+|||||||||++|||+|||||+|+.|   ..|++......|
T Consensus       159 ~~c~~~~~HaV~IVGyg~~~~G~~YWivkNSWG~~WGe~GY~ri~r~~n~~~~~CgI~~~~~~p  222 (262)
T 2fo5_A          159 GECGTELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYP  222 (262)
T ss_dssp             CCCCCCCCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTTEEEEESSCSCTTCGGGTTTSCEEE
T ss_pred             CCCCCcCCEEEEEEEEcccCCCceEEEEEeCCCCCCCCCeEEEEEcCCCCCCCccceeeeeeEE
Confidence                  69999    775   6799999999999999999999999764   357776555544

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A

Probab=100.00  E-value=3.4e-50  Score=405.40  Aligned_cols=197  Identities=35%  Similarity=0.719  Sum_probs=177.0

Q ss_pred             CCCCCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHH
Q psy11694        293 GDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIID  372 (655)
Q Consensus       293 ~~~lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~  372 (655)
                      ..+||++||||++++|+||||||.||||||||++++||++++|+++..+.||+|+|+||+..+.||+||++..|++|+.+
T Consensus        15 ~~~lP~~~DwR~~~~vtpVkdQg~CGsCWAFaa~~alE~~~~i~~~~~~~lSeq~l~dC~~~~~gC~GG~~~~a~~yi~~   94 (241)
T 2oul_A           15 ENFDHAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGCNGGLINNAFEDMIE   94 (241)
T ss_dssp             CCCCSSCEEGGGTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHCTTSCTTBCBCHHHHHHHHHH
T ss_pred             cccCCCccccCcCCCCCCCccCccchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhhcCCCCCCCCCCHHHHHHHHHH
Confidence            35799999999999999999999999999999999999999999999999999999999977889999999999999998


Q ss_pred             cCCCCCCCCCCCCCCCCCCc-cccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC-cccccccEEe---
Q psy11694        373 NGGVVSDQAYPYKASESERG-CLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG-LFYYSGGVID---  447 (655)
Q Consensus       373 ~~Gi~~e~~yPY~~~~~~~~-C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~-~~~Y~~Gi~~---  447 (655)
                      ++|+++|++|||.+...  . |...... ..++|.+|..++..++++||++|   |||+++|++.. |++|++|||.   
T Consensus        95 ~~Gi~~e~~yPY~~~~~--~~C~~~~~~-~~~~i~~~~~v~~~~~~~ik~~l---GPV~v~i~~~~~f~~Y~~Giy~~~c  168 (241)
T 2oul_A           95 LGGICPDGDYPYVSDAP--NLCNIDRCT-EKYGIKNYLSVPDNKLKEALRFL---GPISISVAVSDDFAFYKEGIFDGEC  168 (241)
T ss_dssp             TTSBCBTTSSCCCTTSC--CCCCTTSSS-CCBCCSEEEECCTTCHHHHHHHT---CCEEEEECBCHHHHTCCSSBCCSCB
T ss_pred             hCCcCccccCCCcCCCC--CcCCCCCCc-cceeeeeEEEeCCCCHHHHHHhh---CCEEEEEecCcchhhcCCcEEcCcC
Confidence            66999999999999877  6 9865544 57889999999888899999999   99999999986 9999999996   


Q ss_pred             ---CCceE----EcC------------CccEEEEecCCCCccCCCceEEecccCCcc---ccccccCCcc
Q psy11694        448 ---LNQRL----YGT------------SIPYWIVKNSWGSDWGEKVEDKVGSSGNRT---RDLELTGVLP  495 (655)
Q Consensus       448 ---~~Hav----yg~------------g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~---~~~~~~gv~p  495 (655)
                         ++|||    ||+            +.+|||||||||++|||+|||||+|+.+..   |++......|
T Consensus       169 ~~~~~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~~~~  238 (241)
T 2oul_A          169 GDQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIP  238 (241)
T ss_dssp             CSSCCEEEEEEEEEEEEEECTTTCSEEEEEEEEEECSBCTTSTBTTEEEEEECSSSCCCGGGTTSSEEEE
T ss_pred             CCCCCEEEEEEEeccccccccccccCCCCCEEEEEeCCCCCcccCCEEEEEcCCCCCCCcCCccceEEEE
Confidence               69999    664            457999999999999999999999987764   7776555444

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0

Probab=100.00  E-value=1.8e-50  Score=402.74  Aligned_cols=194  Identities=36%  Similarity=0.785  Sum_probs=171.8

Q ss_pred             CCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHHcCC
Q psy11694        296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGG  375 (655)
Q Consensus       296 lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~G  375 (655)
                      ||++||||++++|+||||||.||||||||++++||++++|+++..+.||+|+|+||+..+.||+||++..|++|+.+++|
T Consensus         1 lP~~~DwR~~~~vtpVkdQg~cGSCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~G   80 (222)
T 3u8e_A            1 APASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXXXXXGGDADDAFRWVITNGG   80 (222)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSCSSCTTTTHHHHHHHHHHHHHSCCCCBCHHHHHHHCC------CCCHHHHHHHHHHHTC
T ss_pred             CCCcCcCCcCCCCCCcccCCCCccHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhccCcccccCCCCHHHHHHHHHHcCC
Confidence            79999999999999999999999999999999999999999999999999999999987899999999999999999889


Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC--cccccc-cEEe-----
Q psy11694        376 VVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSG-GVID-----  447 (655)
Q Consensus       376 i~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~--~~~Y~~-Gi~~-----  447 (655)
                      |++|++|||.+...  .|......  .++|.+|..++ .++++||++|. +|||+++|++..  |++|++ |||.     
T Consensus        81 i~~e~~yPY~~~~~--~C~~~~~~--~~~i~~~~~v~-~~~~~i~~~l~-~GPV~v~i~~~~~~f~~Y~~~Giy~~~~~~  154 (222)
T 3u8e_A           81 IASDANYPYTGVDG--TCDLNKPI--AARIDGYTNVP-NSSSALLDAVA-KQPVSVNIYTSSTSFQLYTGPGIFAGSSCS  154 (222)
T ss_dssp             BCBTTTSCCCSSCC--CCCCCSCC--CBCCCEEEECC-SCHHHHHHHHH-HSCEEEEECCCSHHHHTCCCSSCBCCTTCC
T ss_pred             ccchhcCCCcccCC--ccccCCCC--eEEEccEEEeC-CcHHHHHHHHh-CCCEEEEEEecChhhhcEeCCceECCCccc
Confidence            99999999999887  89866544  67899999998 68999999995 699999999974  999999 9996     


Q ss_pred             -----CCceE----EcC---CccEEEEecCCCCccCCCceEEecccCCc---cccccccCCcc
Q psy11694        448 -----LNQRL----YGT---SIPYWIVKNSWGSDWGEKVEDKVGSSGNR---TRDLELTGVLP  495 (655)
Q Consensus       448 -----~~Hav----yg~---g~~yWivkNSWG~~WGe~Gy~~i~~~~~~---~~~~~~~gv~p  495 (655)
                           ++|||    ||+   +.+|||||||||++|||+|||||+|+.+.   .|++......|
T Consensus       155 ~~~~~~~HaV~iVGyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~g~Cgi~~~~~~p  217 (222)
T 3u8e_A          155 DDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYP  217 (222)
T ss_dssp             CCGGGCCEEEEEEEEEESSTTCEEEEEECSBCTTSTBTTEEEEECSCSCTTCGGGTTSSCEEE
T ss_pred             CCCCcCCEEEEEEEEeecCCCCcEEEEECCCCCCcccCCEEEEEcCCCCCCCcCCccccceEE
Confidence                 48999    775   57999999999999999999999998764   78877776665

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A*

Probab=100.00  E-value=4.9e-50  Score=404.72  Aligned_cols=197  Identities=37%  Similarity=0.708  Sum_probs=176.4

Q ss_pred             CCCCCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHH
Q psy11694        293 GDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIID  372 (655)
Q Consensus       293 ~~~lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~  372 (655)
                      ..+||++||||++++|+||||||.||||||||++++||++++|+++..+.||+|+|+||+..+.||+||++..|++|+.+
T Consensus        17 ~~~lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~alE~~~~i~~~~~~~lSeq~lvdC~~~~~gC~GG~~~~a~~y~~~   96 (243)
T 3bwk_A           17 AKLDRIAYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKNNGCYGGYITNAFDDMID   96 (243)
T ss_dssp             CCCCCSCEEGGGTTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHCSCCCBCHHHHHHHCTTSCGGGCCCHHHHHHHHHH
T ss_pred             cccCCCceecCcCCCCCCCccCCCCchHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Confidence            45799999999999999999999999999999999999999999999999999999999977889999999999999998


Q ss_pred             cCCCCCCCCCCCCCCCCCCc-cccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC-cccccccEEe---
Q psy11694        373 NGGVVSDQAYPYKASESERG-CLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG-LFYYSGGVID---  447 (655)
Q Consensus       373 ~~Gi~~e~~yPY~~~~~~~~-C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~-~~~Y~~Gi~~---  447 (655)
                      ++|+++|++|||.+...  . |...... ..++|.+|..++..++++||++|   |||+++|++.. |+.|++|||.   
T Consensus        97 ~~Gi~~e~~yPY~~~~~--~~C~~~~~~-~~~~i~~~~~v~~~~~~~ik~~l---GPV~v~i~~~~~f~~Y~~Giy~~~c  170 (243)
T 3bwk_A           97 LGGLCSQDDYPYVSNLP--ETCNLKRCN-ERYTIKSYVSIPDDKFKEALRYL---GPISISIAASDDFAFYRGGFYDGEC  170 (243)
T ss_dssp             TTSBCBTTTSCCCTTSC--CCCCGGGCS-SCBCCCEEEECCTTCHHHHHHHT---CCEEEEECCCHHHHTCCSSSCCCCC
T ss_pred             hCCcccccccCCcCCCC--CcCCCCCCc-cceeeeeEEEeCCCCHHHHHHhh---CCEEEEEecChhHHhcCCceecCCC
Confidence            66999999999998876  6 8765443 56889999999888999999999   99999999986 9999999996   


Q ss_pred             ---CCceE----EcC------------CccEEEEecCCCCccCCCceEEecccCCcc---ccccccCCcc
Q psy11694        448 ---LNQRL----YGT------------SIPYWIVKNSWGSDWGEKVEDKVGSSGNRT---RDLELTGVLP  495 (655)
Q Consensus       448 ---~~Hav----yg~------------g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~---~~~~~~gv~p  495 (655)
                         ++|||    ||+            +.+|||||||||++|||+|||||+|+.+..   |++......|
T Consensus       171 ~~~~~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~~~~  240 (243)
T 3bwk_A          171 GAAPNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVP  240 (243)
T ss_dssp             CSSCCEEEEEEEEEEEEEECTTTCSEEEEEEEEEECSBCTTSTBTTEEEEEECSSSCCCSTTTTSSEEEE
T ss_pred             CCcCCeEEEEEEecCccccccccccCCCCCEEEEEeCCCCCcCCCcEEEEEcCCCCCCCcCCccceEEEE
Confidence               69999    664            458999999999999999999999987664   6666554444

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0

Probab=100.00  E-value=6.6e-50  Score=399.90  Aligned_cols=198  Identities=38%  Similarity=0.793  Sum_probs=178.0

Q ss_pred             CCCCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCC--CCCCCCCcHHHHHHHHH
Q psy11694        294 DDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS--NGGCNGGRMDDALQYII  371 (655)
Q Consensus       294 ~~lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~--~~gC~GG~~~~a~~~~~  371 (655)
                      .+||++||||++++|+||||||.||||||||++++||++++|++++.+.||+|+|+||+..  +.||+||++..|++|+.
T Consensus         5 ~~lP~~~Dwr~~~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~gC~GG~~~~a~~~~~   84 (224)
T 3f75_A            5 SELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAEGNQSCSGGEMNDAFQYVL   84 (224)
T ss_dssp             GGSCSCEEHHHHTCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCGGGCBCHHHHHHHHH
T ss_pred             cCCCCceecccCCCCCCCccCCCCccHHHHHHHHHHHHHHHHhcCCCceeCHHHHhhcccCCCCCCCCCCCHHHHHHHHH
Confidence            4799999999999999999999999999999999999999999999999999999999864  78999999999999999


Q ss_pred             HcCCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC--cccccccEEe--
Q psy11694        372 DNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVID--  447 (655)
Q Consensus       372 ~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~--~~~Y~~Gi~~--  447 (655)
                      +++||++|++|||.+...  .|...... ..+++.+|..++..++++|+++|+ +|||+++|++..  |++|++|||.  
T Consensus        85 ~~~Gi~~e~~yPY~~~~~--~C~~~~~~-~~~~i~~~~~~~~~~~~~l~~~l~-~gPV~v~i~~~~~~f~~y~~Giy~~~  160 (224)
T 3f75_A           85 DSGGICSEDAYPYLARDE--ECRAQSCE-KVVKILGFKDVPRRSEAAMKAALA-KSPVSIAIEADQMPFQFYHEGVFDAS  160 (224)
T ss_dssp             HHTCBCBTTTSCCCSSCC--CCCGGGSC-CCBCCSEEEECCSSCHHHHHHHHH-HSCEEEEECCCSHHHHTEEEEEECCC
T ss_pred             HhCCccccccCCCcCCCC--CCCcCCCC-ceEEeccEEEeCCChHHHHHHHHc-CCCEEEEEeccchhhhcCccceECCC
Confidence            856999999999999887  88765544 567789999998889999999999 999999999975  9999999997  


Q ss_pred             ----CCceE----EcC----CccEEEEecCCCCccCCCceEEecccC--CccccccccCCcc
Q psy11694        448 ----LNQRL----YGT----SIPYWIVKNSWGSDWGEKVEDKVGSSG--NRTRDLELTGVLP  495 (655)
Q Consensus       448 ----~~Hav----yg~----g~~yWivkNSWG~~WGe~Gy~~i~~~~--~~~~~~~~~gv~p  495 (655)
                          ++|||    ||+    +.+|||||||||++||++|||||+|+.  +..|++......|
T Consensus       161 ~~~~~~Hav~iVGyg~~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~cgi~~~~~~p  222 (224)
T 3f75_A          161 CGTDLDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFP  222 (224)
T ss_dssp             CCCCCCEEEEEEEEEEETTTTEEEEEEECSBCTTSTBTTEEEEESCSCTTCGGGTTSSCEEE
T ss_pred             CCCccCeEEEEEEEecccCCCCCEEEEECCcCcchhhCCEEEEEcCCCCCCcCcccCceeee
Confidence                78999    664    578999999999999999999999986  4557776665544

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ...

Probab=100.00  E-value=6.4e-47  Score=387.32  Aligned_cols=197  Identities=27%  Similarity=0.504  Sum_probs=161.3

Q ss_pred             CCCCCceecCCC----CCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcC--CCcCCCHHHHHHccC--CCCCCCCCcHHH
Q psy11694        294 DDLPEAFDWRAE----GVISKVKEQGKCACCWAFSAVGVVEAMHAIQGN--SLTELSVQQLVDCDM--SNGGCNGGRMDD  365 (655)
Q Consensus       294 ~~lP~~~Dwr~~----g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~--~~~~lS~q~l~dC~~--~~~gC~GG~~~~  365 (655)
                      .+||++||||++    +.|+||||||.||||||||++++||++++|+++  ..+.||+|+|+||+.  .+.||+||++..
T Consensus         5 ~~lP~~~D~R~~w~~~~~vt~VkdQg~CGSCWAfa~~~ale~~~~i~~~~~~~~~LS~q~lvdC~~~~~~~gC~GG~~~~   84 (266)
T 3cbj_A            5 LKLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAE   84 (266)
T ss_dssp             CCCCSCEEHHHHSTTCGGGGCCCBCCSSBCHHHHHHHHHHHHHHHHHTTTSCCCCBCHHHHHHHCGGGGBCTTBCBCHHH
T ss_pred             CCCCccCcchhccCCCCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHhCCCCccccCHHHHHhhccccCCCCCCCCCHHH
Confidence            579999999886    789999999999999999999999999999875  478999999999986  468999999999


Q ss_pred             HHHHHHHcCCCCC-------CCCCCCCC---------CCCCCccccC---------C----CC---CceeeeeceEEcCC
Q psy11694        366 ALQYIIDNGGVVS-------DQAYPYKA---------SESERGCLVG---------E----EE---GFKVKVKEYSRIPY  413 (655)
Q Consensus       366 a~~~~~~~~Gi~~-------e~~yPY~~---------~~~~~~C~~~---------~----~~---~~~~~i~~~~~v~~  413 (655)
                      ||+|+.++ |+++       |.+|||..         ...  .|...         .    ..   ........+..++ 
T Consensus        85 a~~y~~~~-Gi~~~~~Y~~~e~~~PY~~~~~~~~~~~~~~--~C~~~~~~p~c~~~c~~~~~~~~~~~~~~~~~~~~v~-  160 (266)
T 3cbj_A           85 AWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEAHVNGARP--PCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVS-  160 (266)
T ss_dssp             HHHHHHHT-CBCBCCSTTCCCSSSCCCSCCCSCCCSCSSC--CCCSCCCCCCCCCSCCTTCCSCTGGGCBCBSCCEECC-
T ss_pred             HHHHHHHh-CcCcCccccccccccCcccccccccccCCCC--CCccccCCCccccccCCCCcceeeeeeeeeeeeEEeC-
Confidence            99999987 9999       99999983         222  45321         0    00   0011122334565 


Q ss_pred             CCHHHHHHHHhhCCCeEEEEEcCC-cccccccEEe-------CCceE----EcC--CccEEEEecCCCCccCCCceEEec
Q psy11694        414 GEEEEMKKWVATRGPLSVGMNANG-LFYYSGGVID-------LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVG  479 (655)
Q Consensus       414 ~~~~~ik~~l~~~gPV~v~i~~~~-~~~Y~~Gi~~-------~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~  479 (655)
                      .++++||++|+++|||+|+|++.. |++|++|||.       ++|||    ||+  |.+|||||||||++|||+|||||+
T Consensus       161 ~~~~~i~~~i~~~GPV~v~i~~~~~f~~Y~~Gvy~~~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~  240 (266)
T 3cbj_A          161 NSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKIL  240 (266)
T ss_dssp             SCHHHHHHHHHHHCCEEEEEEEEGGGGGCCSSEECCCSSCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEE
T ss_pred             CCHHHHHHHHHhcCCEEEEEEeccchhhcCCeEEecCCCCccCCeEEEEEEecccCCceEEEEEcCCCCccCCCCEEEEE
Confidence            489999999999999999999976 9999999997       48999    776  789999999999999999999999


Q ss_pred             ccCCccccccccCCcc
Q psy11694        480 SSGNRTRDLELTGVLP  495 (655)
Q Consensus       480 ~~~~~~~~~~~~gv~p  495 (655)
                      |+.| .|++....+.+
T Consensus       241 rg~n-~cgI~~~~~~~  255 (266)
T 3cbj_A          241 RGQD-HCGIESEVVAG  255 (266)
T ss_dssp             CSSC-GGGTTTSCEEC
T ss_pred             cCCC-cccccCceEEE
Confidence            9764 46665544433

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*

Probab=100.00  E-value=1.2e-46  Score=382.97  Aligned_cols=191  Identities=27%  Similarity=0.587  Sum_probs=156.9

Q ss_pred             CCCCceecCCC----CCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcC--CCcCCCHHHHHHccC-CCCCCCCCcHHHHH
Q psy11694        295 DLPEAFDWRAE----GVISKVKEQGKCACCWAFSAVGVVEAMHAIQGN--SLTELSVQQLVDCDM-SNGGCNGGRMDDAL  367 (655)
Q Consensus       295 ~lP~~~Dwr~~----g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~--~~~~lS~q~l~dC~~-~~~gC~GG~~~~a~  367 (655)
                      +||++||||++    ++||||||||.||||||||++++||++++|+++  ..+.||+|+|+||+. .+.||+||++..||
T Consensus         2 ~lP~s~D~R~~~~~~~~vtpVkdQg~CGSCWAFaa~~ale~~~~i~~~~~~~~~LSeQ~lvdC~~~~~~GC~GG~~~~a~   81 (254)
T 3qsd_A            2 EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLLSCCESCGLGCEGGILGPAW   81 (254)
T ss_dssp             CCCSCEEHHHHCTTCGGGGCCCBCCSSBCHHHHHHHHHHHHHHHHHTTTCCCCCBCHHHHHHHCTTSBCTTBCBCHHHHH
T ss_pred             CCCCcCccccccCCCCccCCCCCcccCccHHHHHHHHHHHHHHHHHhCCCccccCCHHHHHhhhcCCCCCCCCCCHHHHH
Confidence            58999999997    689999999999999999999999999999976  689999999999975 46899999999999


Q ss_pred             HHHHHcCCCCCCCCC-------CCCC---------CCCCCccccC----------CCCC---c----eeeeeceEEcCCC
Q psy11694        368 QYIIDNGGVVSDQAY-------PYKA---------SESERGCLVG----------EEEG---F----KVKVKEYSRIPYG  414 (655)
Q Consensus       368 ~~~~~~~Gi~~e~~y-------PY~~---------~~~~~~C~~~----------~~~~---~----~~~i~~~~~v~~~  414 (655)
                      +|+.++ ||++|++|       ||..         ...  .|...          ....   .    .........++. 
T Consensus        82 ~yi~~~-Gi~~e~~y~~~~~c~PY~~~~c~~~~~~~~~--~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~-  157 (254)
T 3qsd_A           82 DYWVKE-GIVTGSSKENHAGCEPYPFPKCEHHTKGKYP--PCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKN-  157 (254)
T ss_dssp             HHHHHT-CBCBCCCTTTCCSSSCCSSCCCBCSSCSSSC--BCCSCCCCCCCCCCCCCTTCCSCGGGGCBCCSEEEECCS-
T ss_pred             HHHHHc-CCCcccccccCcCcCCcccccccccccCcCC--CCcccccCCccccccccCCccceeeeeeeeeeeeEecCC-
Confidence            999998 99999888       9973         222  44311          0000   0    001111224444 


Q ss_pred             CHHHHHHHHhhCCCeEEEEEcCC-cccccccEEe-------CCceE----EcC--CccEEEEecCCCCccCCCceEEecc
Q psy11694        415 EEEEMKKWVATRGPLSVGMNANG-LFYYSGGVID-------LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGS  480 (655)
Q Consensus       415 ~~~~ik~~l~~~gPV~v~i~~~~-~~~Y~~Gi~~-------~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~  480 (655)
                      ++++||++|+++|||+++|++.. |++|++|||.       ++|||    ||+  +.+|||||||||++|||+|||||+|
T Consensus       158 ~~~~i~~~l~~~gPv~~~~~~~~~f~~y~~Gi~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~r  237 (254)
T 3qsd_A          158 DEKAIQKEIMKYGPVEAGFTVYEDFLNYKSGIYKHITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVR  237 (254)
T ss_dssp             CHHHHHHHHHHHCCEEEEEEEEGGGGGCCSSEECCCSSCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEEC
T ss_pred             cHHHHHHHHHHcCCEEEEEEeccccccccCCeeccCCCCCCCCeEEEEEEEeecCCeeEEEEEeCCCCCcccCCeEEEEc
Confidence            89999999999999999999975 9999999997       58999    765  7899999999999999999999999


Q ss_pred             cCCccccccc
Q psy11694        481 SGNRTRDLEL  490 (655)
Q Consensus       481 ~~~~~~~~~~  490 (655)
                      +.| .|++..
T Consensus       238 g~n-~CgI~~  246 (254)
T 3qsd_A          238 GRD-ECSIES  246 (254)
T ss_dssp             SSC-GGGTTS
T ss_pred             CCC-eecCCC
Confidence            765 355543

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A

Probab=100.00  E-value=2.4e-46  Score=384.26  Aligned_cols=184  Identities=30%  Similarity=0.631  Sum_probs=161.8

Q ss_pred             CCCCCceecCCC---CCCCcCCCCC---CCccHHHHHHHHHHHHHHHHhcC-C--CcCCCHHHHHHccCCCCCCCCCcHH
Q psy11694        294 DDLPEAFDWRAE---GVISKVKEQG---KCACCWAFSAVGVVEAMHAIQGN-S--LTELSVQQLVDCDMSNGGCNGGRMD  364 (655)
Q Consensus       294 ~~lP~~~Dwr~~---g~vtpVkdQg---~CGsCwAfa~~~~le~~~~i~~~-~--~~~lS~q~l~dC~~~~~gC~GG~~~  364 (655)
                      .+||++||||++   ++|+||||||   .||||||||++++||++++|+++ .  .+.||+|+|+||+.. .||+||++.
T Consensus        34 ~~lP~~~DwR~~~~~~~vtpVkdQg~~~~CGSCWAfa~~~alE~~~~i~~~g~~~~~~LS~Q~lvdC~~~-~gC~GG~~~  112 (277)
T 1deu_A           34 ADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNA-GSCEGGNDL  112 (277)
T ss_dssp             GGSCSCEETTSBTTBCCCCCCCBTTCSSCCBCHHHHHHHHHHHHHHHHHTTTCSSCCCBCHHHHHHHSSS-EETBEECHH
T ss_pred             ccCCCceecccCCCCCcCCccccCCCCCCCcchHHHHHHHHHHHHHHHHhCCCCCCcccCHHHHHhCcCC-CCCCCCCHH
Confidence            579999999998   6899999999   99999999999999999999875 3  479999999999864 899999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCCCCCCcccc-CC-------------CCCceeeeeceEEcCCCCHHHHHHHHhhCCCeE
Q psy11694        365 DALQYIIDNGGVVSDQAYPYKASESERGCLV-GE-------------EEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLS  430 (655)
Q Consensus       365 ~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~-~~-------------~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~  430 (655)
                      .||+|+.++ ||++|++|||.+...  .|.. ..             .....+++.+|..++  ++++||++|+++|||+
T Consensus       113 ~a~~yi~~~-Gi~~e~~yPY~~~~~--~C~~~~~~~~~~~~~~c~~~~~~~~~~i~~y~~v~--~~~~i~~~i~~~GPV~  187 (277)
T 1deu_A          113 SVWDYAHQH-GIPDETCNNYQAKDQ--ECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLS--GREKMMAEIYANGPIS  187 (277)
T ss_dssp             HHHHHHHHT-CBCBGGGSCCCSSCC--CCCHHHHSEEEEETTEEEECSSCCCBCEEEEEEEC--SHHHHHHHHHHHCCEE
T ss_pred             HHHHHHHHc-CCCcCccCCCcCCCC--CccccccccccccCcccccccCcceEEeceeEecC--CHHHHHHHHHHcCCEE
Confidence            999999987 999999999998876  6762 10             011345777888775  5889999999999999


Q ss_pred             EEEEcCC-cccccccEEe-------CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCC
Q psy11694        431 VGMNANG-LFYYSGGVID-------LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGN  483 (655)
Q Consensus       431 v~i~~~~-~~~Y~~Gi~~-------~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~  483 (655)
                      ++|++.. |++|++|||.       ++|||    ||+  +.+|||||||||++|||+|||||+|+.|
T Consensus       188 v~i~~~~~f~~Y~~GIy~~~~~~~~~~HaV~iVGyg~~~g~~YWivkNSWG~~WGe~GY~~i~rg~n  254 (277)
T 1deu_A          188 CGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTY  254 (277)
T ss_dssp             EEECCCHHHHTCCSSEECBCCSCCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECTTH
T ss_pred             EEEecccccccCcCcEECCCCCCCcCCeEEEEEEecccCCccEEEEEeCCCCccCCCcEEEEEcCCC
Confidence            9999986 9999999997       79999    775  7899999999999999999999999866

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X

Probab=100.00  E-value=8.1e-44  Score=364.77  Aligned_cols=193  Identities=26%  Similarity=0.490  Sum_probs=154.4

Q ss_pred             CceecCCC-CCCC--cCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCC--CCCCCCCc-HHHHHHHHH
Q psy11694        298 EAFDWRAE-GVIS--KVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS--NGGCNGGR-MDDALQYII  371 (655)
Q Consensus       298 ~~~Dwr~~-g~vt--pVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~--~~gC~GG~-~~~a~~~~~  371 (655)
                      ...|||+. ++++  ||||||.||||||||++++||++++|+++.++.||+|+|+||+..  +.||+||. +..++.|+.
T Consensus         9 ~~~dWR~~~~~~~it~VkdQg~CGSCWAFaa~~alE~~~~i~~~~~~~LS~Q~lvdC~~~~~~~GC~GG~~~~~~~~~i~   88 (265)
T 2wbf_X            9 YCNRLKDENNCISNLQVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFLQIIE   88 (265)
T ss_dssp             CBCGGGCTTSTGGGSCCCBCTTSSCHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHCCSSSCCCTTTCCCCHHHHHHHHH
T ss_pred             HHHhhccCCCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHhhcccCCCCCCCCCCHHHHHHHHH
Confidence            45799998 6877  999999999999999999999999999999999999999999863  78999996 555568888


Q ss_pred             HcCCCCCCCCCCCCCCCCCCccccCCC----------------CCceeeeeceEEcCC----CC----HHHHHHHHhhCC
Q psy11694        372 DNGGVVSDQAYPYKASESERGCLVGEE----------------EGFKVKVKEYSRIPY----GE----EEEMKKWVATRG  427 (655)
Q Consensus       372 ~~~Gi~~e~~yPY~~~~~~~~C~~~~~----------------~~~~~~i~~~~~v~~----~~----~~~ik~~l~~~g  427 (655)
                      +++||++|++|||.+......|.....                ....+++.+|..++.    .+    +++||++|+++|
T Consensus        89 ~~Ggi~~e~~yPY~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ik~~i~~~G  168 (265)
T 2wbf_X           89 DYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYESERFHDNMDAFVKIIKTEVMNKG  168 (265)
T ss_dssp             HHCCCCBTTTSCCCGGGTTSCCCCCCTTCCCTTTTCEECCCCCSSSTTCCSSEEEEEGGGGTTCHHHHHHHHHHHHHHHS
T ss_pred             HcCCCCCccccCCcCCCCCCCCCCccccccccccccccccccCCCceeecCCceEeeccccccchhhHHHHHHHHHHhcC
Confidence            885699999999986432226764321                012346778877754    23    478999999999


Q ss_pred             CeEEEEEcCCccccc-cc--EEe------CCceE----EcC-----C--ccEEEEecCCCCccCCCceEEecccCCcccc
Q psy11694        428 PLSVGMNANGLFYYS-GG--VID------LNQRL----YGT-----S--IPYWIVKNSWGSDWGEKVEDKVGSSGNRTRD  487 (655)
Q Consensus       428 PV~v~i~~~~~~~Y~-~G--i~~------~~Hav----yg~-----g--~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~  487 (655)
                      ||+++|++..|+.|+ +|  ++.      ++|||    ||+     |  .+|||||||||++|||+|||||+|.++..|+
T Consensus       169 PV~v~i~~~~f~~y~~~g~~~~~~c~~~~~~HaV~iVGyG~~~~~~g~~~~YWivkNSWG~~WGe~GY~ri~~~g~n~Cg  248 (265)
T 2wbf_X          169 SVIAYIKAENVMGYEFSGKKVKNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCH  248 (265)
T ss_dssp             CEEEEECGGGGCSGGGGSSSEECCCCCSCCCEEEEEEEEEEEECTTSCEEEEEEEECSBCTTSTBTTEEEEESSCCTTCS
T ss_pred             CEEEEEEcccccccccCCcEEcCCCCCCcCCEEEEEEEEeCCcccCCCcCCEEEEEcCCCCccCCCCEEEEEecCCCccC
Confidence            999999997776664 33  443      79999    774     2  5899999999999999999999987665677


Q ss_pred             ccc
Q psy11694        488 LEL  490 (655)
Q Consensus       488 ~~~  490 (655)
                      +..
T Consensus       249 i~~  251 (265)
T 2wbf_X          249 FNF  251 (265)
T ss_dssp             SCS
T ss_pred             cce
Confidence            443

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa}

Probab=100.00  E-value=2.5e-43  Score=365.20  Aligned_cols=224  Identities=17%  Similarity=0.223  Sum_probs=169.1

Q ss_pred             ceeeeeCcCCCCChHHHHhhcCCCCCCcccccCCCCCCCCCCCCcchhhhhhhcccCCCCCCCCCceecCCCCCCCcCCC
Q psy11694        234 TAVFGVNKFFDLSESDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKE  313 (655)
Q Consensus       234 ~~~~g~N~FsDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~vtpVkd  313 (655)
                      ...-..|++.++..|.|+..+|..++.      |..+.....  +  .        +....+||++||||+++   ||||
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~lG~~p~~------~d~rd~~~~--~--~--------~~~~~~lP~s~DwR~~~---pVkd   71 (291)
T 3ois_A           13 GLVPRGSHMQTVLKRRKKSGYGYIPDI------ADIRDFSYT--P--E--------KSVIAALPPKVDLTPPF---QVYD   71 (291)
T ss_dssp             ----------CCCCCCCCTTCCEECCC------CCTTCCBCC--C--C--------HHHHHTCCSEEECCCSS---CCCB
T ss_pred             CcccchhhHhHhhhccccccCCCCCCC------CcccccccC--C--C--------ccccccCCcceecccCC---Cccc
Confidence            344567899999999998866754441      111110000  0  0        00014799999999984   9999


Q ss_pred             CCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHH--HccC---CC-CCCCCCcHHHHHHHHHHcCCCCCCCCCCCCCC
Q psy11694        314 QGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLV--DCDM---SN-GGCNGGRMDDALQYIIDNGGVVSDQAYPYKAS  387 (655)
Q Consensus       314 Qg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~--dC~~---~~-~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~  387 (655)
                      ||.||||||||++++||+++++ ++..+.||+|+|+  +|..   .+ .+|+||++..||+|+.++ ||++|++|||.+.
T Consensus        72 QG~CGSCWAFAa~~alE~~~~~-~g~~~~lS~q~l~~~~c~~~~~~~~~~c~GG~~~~A~~yi~~~-Gi~~e~~yPY~~~  149 (291)
T 3ois_A           72 QGRIGSCTANALAAAIQFERIH-DKQSPEFIPSRLFIYYNERKIEGHVNYDSGAMIRDGIKVLHKL-GVCPEKEWPYGDT  149 (291)
T ss_dssp             CTTSSCHHHHHHHHHHHHHHHH-TTCSSCCCBCHHHHHHHHHHHSSCTTSCCCEEHHHHHHHHHHT-CCCBGGGSCCCCC
T ss_pred             CCCCccHHHHHHHHHHHHHHHH-hCCCCCcCcCHHHHHhhhhhhhcCCCCCCCcCHHHHHHHHHHh-CCCCHhhCCCCCC
Confidence            9999999999999999998865 5677899999998  6762   23 468899999999999988 9999999999987


Q ss_pred             CCC-CccccCC-------------CCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC-cccccc--cEEe---
Q psy11694        388 ESE-RGCLVGE-------------EEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG-LFYYSG--GVID---  447 (655)
Q Consensus       388 ~~~-~~C~~~~-------------~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~-~~~Y~~--Gi~~---  447 (655)
                      ... ..|...+             .....+++.+|..|+. ++++|+++|+++|||+++|++.. |+.|++  |||.   
T Consensus       150 ~~~~~~C~~~~~~~~~~~p~~~C~~~~~~~~i~~y~~v~~-~e~~i~~al~~~gPV~v~~~~~~~f~~y~~~~Gi~~~~~  228 (291)
T 3ois_A          150 PADPRTEEFPPGAPASKKPSDQCYKDAQNYKITEYSRVAQ-DIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIPLPT  228 (291)
T ss_dssp             CCCTTTCSCCTTCGGGSCCCHHHHHHHGGGCCCEEEECCS-CHHHHHHHHHTTCCEEEEEEEEHHHHGGGCCCSBCCCCC
T ss_pred             ccccccccccccccccCCCCHHHHhhcccceeccEEEcCc-CHHHHHHHHHcCCCEEEEEEeccchhhcCCCCeEEeCCC
Confidence            421 1454310             0113578899999987 89999999999999999999986 999998  9985   


Q ss_pred             ------CCceE----EcCCccEEEEecCCCCccCCCceEEeccc
Q psy11694        448 ------LNQRL----YGTSIPYWIVKNSWGSDWGEKVEDKVGSS  481 (655)
Q Consensus       448 ------~~Hav----yg~g~~yWivkNSWG~~WGe~Gy~~i~~~  481 (655)
                            ++|||    ||++.+|||||||||++||++|||||+++
T Consensus       229 ~~~~~~~~Hav~iVGy~~~~~ywivkNSWG~~WG~~Gy~~i~~~  272 (291)
T 3ois_A          229 KNDTLEGGHAVLCVGYDDEIRHFRIRNSWGNNVGEDGYFWMPYE  272 (291)
T ss_dssp             TTSCEEEEEEEEEEEEETTTTEEEEECSBCTTSTBTTEEEEEHH
T ss_pred             CCCCCcCCeEEEEEEEeCCCCEEEEEeCCCCCCCCCcEEEEEHH
Confidence                  38999    87789999999999999999999999875

>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A

Probab=100.00  E-value=1.1e-38  Score=342.23  Aligned_cols=298  Identities=16%  Similarity=0.168  Sum_probs=162.7

Q ss_pred             CCCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHh-cCCCcCCCH----------------HHHHHccC----
Q psy11694        295 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQ-GNSLTELSV----------------QQLVDCDM----  353 (655)
Q Consensus       295 ~lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~-~~~~~~lS~----------------q~l~dC~~----  353 (655)
                      ..|..|+|+....+|||||||.||||||||++++||+.++++ +++.+.||+                |+|+||+.    
T Consensus        52 ~~~~~F~~~~~~~vtpVknQg~cGsCWaFs~~~~lE~~~~~~~~~~~~~LSe~yl~~~dklEkan~flq~lvdc~~~~~~  131 (457)
T 2e01_A           52 QDNRVFNTVVSTDSTPVTNQKSSGRCWLFAATNQLRLNVLSELNLKEFELSQAYLFFYDKLEKANYFLDQIVSSADQDID  131 (457)
T ss_dssp             HCCCCCSEECC------------CCHHHHHHHHHHHHHHHHHTTCSSCCBCHHHHHHHHHHHHHHHHHHHHHHTTTSCTT
T ss_pred             CCCCceEEEecCCccCcccCCCCccchhHHhHHHHHHHHHHHhCCCceeeCChhhhhhhHHHHHHHHHHHHHHhcCCccc
Confidence            356788999888999999999999999999999999999998 788999999                78899975    


Q ss_pred             --------CCCCCCCCcHHHHHHHHHHcCCCCCCCCCCC-CCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHh
Q psy11694        354 --------SNGGCNGGRMDDALQYIIDNGGVVSDQAYPY-KASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVA  424 (655)
Q Consensus       354 --------~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY-~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~  424 (655)
                              .+.||+||.+..++.|+.++ ||+++++||| +....+ +-..+.-  ...++..+       ...|.+++.
T Consensus       132 ~r~v~~l~~~~gcdGG~~~~a~~~i~ky-Givpe~~yP~~s~~s~n-s~~~n~~--L~~kLr~~-------a~~lR~~~~  200 (457)
T 2e01_A          132 SRLVQYLLAAPTEDGGQYSMFLNLVKKY-GLIPKDLYGDLPYSTTA-SRKWNSL--LTTKLREF-------AETLRTALK  200 (457)
T ss_dssp             SHHHHHHHHCTTCSCBCHHHHHHHHHHH-CCCBGGGSCSCSHHHHC-CHHHHHH--HHHHHHHH-------HHHHHHHHH
T ss_pred             chhhhhhccCCCCCCCCHHHHHHHHHHc-CccchhhcCCcccCccc-HHHHHHH--HHHHHHHH-------HHHHHHHHh
Confidence                    46899999999999999887 9999999999 432110 0000000  00000000       001111111


Q ss_pred             hCCCeEEEEEcCCcccccccEEeCCceEEcCCccEEEEecCCCCccCCCceEEecccCCccccccccCCcccc-cccccc
Q psy11694        425 TRGPLSVGMNANGLFYYSGGVIDLNQRLYGTSIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLPSK-LSRLAT  503 (655)
Q Consensus       425 ~~gPV~v~i~~~~~~~Y~~Gi~~~~Havyg~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~~~gv~p~~-~~~ls~  503 (655)
                      ....-.-.+.. ...-....|                              .||.        ..-.|..|.. -..|.-
T Consensus       201 ~~~~~~~~l~~-~~~~~l~~i------------------------------y~il--------~~~LG~pP~~~~~~F~~  241 (457)
T 2e01_A          201 ERSADDSIIVT-LREQMQREI------------------------------FRLM--------SLFMDIPPVQPNEQFTW  241 (457)
T ss_dssp             HSCTTSHHHHH-HHHHHHHHH------------------------------HHHH--------HHHSCCCSSCTTSCEEE
T ss_pred             ccCchhhhHHH-HHHHHHHHH------------------------------HHHH--------HHHcCCCCCCCCceEEE
Confidence            00000000000 000000000                              0000        0011212210 000000


Q ss_pred             ccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCc--------ccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCC-H
Q psy11694        504 EKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAY--------PYKASESERGCLVGEEEGFKVKVKEYSRIPYGE-E  574 (655)
Q Consensus       504 q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~y--------PY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~-~  574 (655)
                      + ..|=+  +.=+  +-..++.+|+++..|+..+.-.        ||.....   ..... +...-+...|.+++... .
T Consensus       242 ~-~~dkd--~~~~--~~~~TP~~F~~~~v~~~~~dyV~l~n~p~~py~~~y~---ve~~~-N~~~g~~~~y~Nvp~d~l~  312 (457)
T 2e01_A          242 E-YVDKD--KKIH--TIKSTPLEFASKYAKLDPSTPVSLINDPRHPYGKLIK---IDRLG-NVLGGDAVIYLNVDNETLS  312 (457)
T ss_dssp             E-EECTT--SCEE--EEEECHHHHHHHTTCCCTTSEEEEECCTTSCTTCEEE---ETTCC-SSTTCCCEEEEECCHHHHH
T ss_pred             E-EEcCC--CCcc--CCCcChHHHHHHHcCCCchheEEEeecCCCccCeeEE---EeccC-CeecCCceeEEEcCHHHHH
Confidence            0 00100  0001  3345788888887676543211        3322110   00000 11112234577777643 2


Q ss_pred             HHHHHHHHhCCCEEEEEEccccccccCCeeecCCC-----------------CCCCcccCeEEEEEEEecccCCCCCCC-
Q psy11694        575 EEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQR-----------------LCNPKAQNHALIIVGYGEEEKKDGTSI-  636 (655)
Q Consensus       575 ~~ik~~i~~~GPV~~~~~~~~~~~y~~Gi~~~~~~-----------------~~~~~~~~HaV~iVGyg~~~~~~~~~~-  636 (655)
                      +.++.+|..+|||++++++..+++|++||+++...                 .+..+..+|||+|||||.+.+    |. 
T Consensus       313 ~~~~~aL~~g~PV~~~~Dv~~~~~~~~GI~~~~~~~~~~fg~~~~m~KaeRl~~~~s~~~HAmlivGyg~d~~----G~~  388 (457)
T 2e01_A          313 KLVVKRLQNNKAVFFGSHTPKFMDKKTGVMDIELWNYPAIGYNLPQQKASRIRYHESLMTAAMLITGCHVDET----SKL  388 (457)
T ss_dssp             HHHHHHHHTTCCEEEEECTTTTEETTTTEECTTSBCGGGGTCCCCCCHHHHHHTTSCCCCEEEEEEEEEECTT----TCC
T ss_pred             HHHHHHHHhCCCEEEEEEcCHhHcccCceecccccchhhcCcccccCHHHhhccCCCCCCeEEEEEEEEeccC----CCc
Confidence            56678888999999999998888899999973211                 123456799999999997631    55 


Q ss_pred             -CEEEEEcCCCCCcCCCCCC
Q psy11694        637 -PYWIVKNSWGSDWGEKVML  655 (655)
Q Consensus       637 -~ywivrNSWG~~WGe~Gy~  655 (655)
                       .|||||||||++||++|||
T Consensus       389 p~yW~VkNSWG~~wG~~GY~  408 (457)
T 2e01_A          389 PLRYRVENSWGKDSGKDGLY  408 (457)
T ss_dssp             EEEEEEECSSCTTSTBTTEE
T ss_pred             cCEEEEEeCccCCcCCCceE
Confidence             7999999999999999996

>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A

Probab=100.00  E-value=1.1e-37  Score=334.18  Aligned_cols=92  Identities=18%  Similarity=0.285  Sum_probs=84.0

Q ss_pred             CCCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHh-cCCCcCCCH----------------HHHHHccCC---
Q psy11694        295 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQ-GNSLTELSV----------------QQLVDCDMS---  354 (655)
Q Consensus       295 ~lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~-~~~~~~lS~----------------q~l~dC~~~---  354 (655)
                      ..|..|+++....+|||+|||.||+|||||++++||+.++++ +++.+.||+                |+|+||+..   
T Consensus        47 ~~~~~F~~~~~~~~tpVknQg~cGsCWaFs~~~~le~~~~~k~~~~~~~lSe~yl~fwDKlEkan~flq~lidc~~~~~~  126 (453)
T 2cb5_A           47 RAQHVFQHAVPQEGKPITNQKSSGRSWIFSCLNVMRLPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLSAFVDTAQRKEP  126 (453)
T ss_dssp             HCCCCCSEECSCCCSSCCBCCBSSCHHHHHHHHHHHHHHHHHTTCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cCCCceeeeeccCCCCcccCCCccchHhhhhHHHHHHHHHHHhcCCeEeeChHHHHHHHHHHHhhHHHHHHHHHHhccCC
Confidence            357789999888999999999999999999999999999998 578899999                999999743   


Q ss_pred             -----------CCCCCCCcHHHHHHHHHHcCCCCCCCCCCCCCC
Q psy11694        355 -----------NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKAS  387 (655)
Q Consensus       355 -----------~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~  387 (655)
                                 +.||+||.+..|+.|+.++ |++++++|||+..
T Consensus       127 ~d~R~v~~l~~~~gcdGG~~~~a~~~i~ky-Gl~p~~~yP~~~~  169 (453)
T 2cb5_A          127 EDGRLVQFLLMNPANDGGQWDMLVNIVEKY-GVIPKKCFPESYT  169 (453)
T ss_dssp             TTSHHHHHHHHCTTCSCBCHHHHHHHHHHH-CCCBGGGSCCCTG
T ss_pred             cchhhHHHhcCCCCCCCCChHHHHHHHHHc-Cccchhhcccccc
Confidence                       6899999999999999876 9999999999874

>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}

Probab=100.00  E-value=1.5e-35  Score=312.09  Aligned_cols=145  Identities=27%  Similarity=0.493  Sum_probs=119.5

Q ss_pred             cCchHHHHHHHHHHcCcccCChHHHHHHHHHHHHHHHHHHHHhccCCCCeeeeccCCCCCCHHHH-HHHhCCCCCCCccc
Q psy11694         38 LNSPVTRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSGTAVFEVNKFFDLSDSDL-QQLTGLNLDSTLED  116 (655)
Q Consensus        38 ~~~~~~~f~~~~~~~~k~Y~~~~e~~~r~~~f~~n~~~i~~~n~~~~~~~~~g~N~fsDlt~~E~-~~~~g~~~~~~~~~  116 (655)
                      .+++.++|++||++|+|+|.+.+|+++||+||++|+++|++||++ +.+|+||||+|||||.||| +.++|.........
T Consensus        59 ~~~~~~lf~~f~~~~~K~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~-~~sy~~g~N~FaDlT~eEf~~~~~~~~~~~~~~~  137 (363)
T 3tnx_A           59 TERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKK-NNSYWLGLNVFADMSNDEFKEKYTGSIAGNYTTT  137 (363)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHTTS-CCSEEECSCTTTTSCHHHHHHHHSCSSCSCCCCS
T ss_pred             HHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHcC-CCCeEEeccccccCCHHHHHHHhccccccccccc
Confidence            345678999999999999999999999999999999999999975 5699999999999999999 56666544322111


Q ss_pred             cCCCcCCCCCCCccchhhhhhhcccCCCCCCCCccccccccCccccccCCCcceeeecccchhhHHhhhhhcccchhhhh
Q psy11694        117 IQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELS  196 (655)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWr~~g~Vt~VkdQg~c~~~~a~~~~~~~e~~~~i~~~~l~~~~  196 (655)
                      .... . +.               ......+||++||||++|+||||||||.|||||||++++++|++.++.++.++.+|
T Consensus       138 ~~~~-~-~~---------------~~~~~~~lP~s~DWR~~g~VtpVkdQG~CGSCWAFsa~~alE~~~~i~tg~~~~LS  200 (363)
T 3tnx_A          138 ELSY-E-EV---------------LNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYS  200 (363)
T ss_dssp             SSSS-S-CC---------------CCCSCCCCCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBC
T ss_pred             cccc-c-cc---------------cCcccCCCCcceecccCCCCCCCccCCcCCchhhhhhcccHHHHHHHHcCCCCCcC
Confidence            1110 0 00               00112379999999999999999999999999999999999999999999999999


Q ss_pred             hhcc
Q psy11694        197 VQHH  200 (655)
Q Consensus       197 ~q~~  200 (655)
                      +|+.
T Consensus       201 eQ~L  204 (363)
T 3tnx_A          201 EQEL  204 (363)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1

Probab=100.00  E-value=5.4e-34  Score=282.18  Aligned_cols=150  Identities=35%  Similarity=0.779  Sum_probs=129.7

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHH
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEE  576 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  576 (655)
                      .+++||+|+|++|...+.||.||++..|++|++++.|+++|++|||.....  .|.... .....++.++..++. ++++
T Consensus        44 ~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~i~~~~Gi~~e~~yPY~~~~~--~C~~~~-~~~~~~i~~~~~i~~-~~~~  119 (214)
T 1m6d_A           44 TLLSLSEQELLDCDKMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQ--SCQFSA-EKAKVYIQDSVELSQ-NEQK  119 (214)
T ss_dssp             CCCCBCHHHHHHHCSSSCTTBCCCHHHHHHHHHHHTCBCBTTTSCCCSSCC--CCCCCG-GGCCBCCSEEEECCS-CHHH
T ss_pred             CCcccCHHHHHHhcCCCCCCCCCCHHHHHHHHHHhcCcccccCcCcCCCCC--cCCCCc-ccceEEecCEEEeCh-HHHH
Confidence            568999999999987788999999999999999877999999999998766  687644 233467888888875 8899


Q ss_pred             HHHHHHhCCCEEEEEEccccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCCCC
Q psy11694        577 MKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVML  655 (655)
Q Consensus       577 ik~~i~~~GPV~~~~~~~~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy~  655 (655)
                      ||++|+++|||+++|++.+|..|++|||..+...|+...++|||+|||||+++     +.+|||||||||++|||+|||
T Consensus       120 ik~~l~~~GPV~v~i~~~~f~~Y~~Giy~~~~~~c~~~~~~HaV~iVGyg~~~-----g~~yWivkNSWG~~WGe~Gy~  193 (214)
T 1m6d_A          120 LAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRS-----DVPFWAIKNSWGTDWGEKGYY  193 (214)
T ss_dssp             HHHHHHHHCCEEEEECTHHHHHCCSSEECCCGGGSCTTCCCEEEEEEEEEEET-----TEEEEEEECSBCTTSTBTTEE
T ss_pred             HHHHHHhCCCEEEEEEechhhhcCCceecCCCCcCCCCcCCEEEEEEEEeecC-----CcEEEEEEeCCCCCcccCcEE
Confidence            99999999999999999778899999997433346666789999999999875     678999999999999999997

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ...

Probab=100.00  E-value=1.2e-33  Score=280.17  Aligned_cols=149  Identities=42%  Similarity=0.816  Sum_probs=131.6

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHH
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEE  576 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  576 (655)
                      .+++||+|+|++|...+.||.||++..|++|++++.|+++|++|||.....  .|.... .....++.+|..++..++++
T Consensus        44 ~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~--~C~~~~-~~~~~~i~~~~~v~~~~~~~  120 (215)
T 3kwz_A           44 KLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEE--SCMYNP-TGKAAKCRGYREIPEGNEKA  120 (215)
T ss_dssp             CCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHHTCEEBTTTSCCCSSCC--CCCCCG-GGEEECCCCEEECCTTCHHH
T ss_pred             CCcccCHHHHHHhcCCCCCCCCCCHHHHHHHHHHhCCccccccCCCccCCC--ccccCC-CCceeEecceEEeCCCCHHH
Confidence            467899999999987788999999999999999877999999999998876  787654 34457889999998889999


Q ss_pred             HHHHHHhCCCEEEEEEcc--ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCCC
Q psy11694        577 MKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVM  654 (655)
Q Consensus       577 ik~~i~~~GPV~~~~~~~--~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy  654 (655)
                      ||++|+++|||+++|++.  +|+.|++|||..  ..|+...++|||+|||||+++     +.+|||||||||++|||+||
T Consensus       121 ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~--~~~~~~~~~HaV~iVGyg~~~-----g~~yWivkNSWG~~WG~~Gy  193 (215)
T 3kwz_A          121 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYD--ESCNSDNLNHAVLAVGYGIQK-----GNKHWIIKNSWGENWGNKGY  193 (215)
T ss_dssp             HHHHHHHTCCEEEEECCCSHHHHTCCSSEECC--TTCCTTCCCEEEEEEEEEEET-----TEEEEEEECSBCTTSTBTTE
T ss_pred             HHHHHHHCCCEEEEEeechhhhhcccCCeECC--CCCCCChhhCEEEEEEEeccC-----CceEEEEECCcCcccccCCE
Confidence            999999999999999995  688999999973  345556789999999999875     67899999999999999999


Q ss_pred             C
Q psy11694        655 L  655 (655)
Q Consensus       655 ~  655 (655)
                      |
T Consensus       194 ~  194 (215)
T 3kwz_A          194 I  194 (215)
T ss_dssp             E
T ss_pred             E
Confidence            7

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ...

Probab=99.98  E-value=7.1e-33  Score=274.38  Aligned_cols=148  Identities=32%  Similarity=0.838  Sum_probs=127.3

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHc--CCCCCCCCcccCCCCC-CCCCCCCCcCCceEEEeeeEEcCCCC
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDN--GGVVSDQAYPYKASES-ERGCLVGEEEGFKVKVKEYSRIPYGE  573 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~--~Gv~~e~~yPY~~~~~-~~~c~~~~~~~~~~~~~~~~~~~~~~  573 (655)
                      .+++||+|+|++|+..+.||.||++..|++|++++  .|+++|++|||..... ..+|.... .....++.+|..++. +
T Consensus        44 ~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~y~~~~~~gGi~~e~~yPY~~~~~~~~~C~~~~-~~~~~~i~~~~~v~~-~  121 (215)
T 3i06_A           44 PLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSG-HTVGATITGHVELPQ-D  121 (215)
T ss_dssp             CCCCCCHHHHHHHCSSSCGGGCCCHHHHHHHHHHHSTTEEEC-CCSCCCCTTSCCCCCCCSS-CCEEEEEEEEEECCS-C
T ss_pred             CCCccCHHHHhccCCCCCCCCCCCHHHHHHHHHHhccccccccCccCCcCCCCCCCccccCC-cccceEecceEEeCC-h
Confidence            57899999999998888899999999999999985  4799999999997643 23676544 344578899999975 8


Q ss_pred             HHHHHHHHHhCCCEEEEEEccccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCC
Q psy11694        574 EEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKV  653 (655)
Q Consensus       574 ~~~ik~~i~~~GPV~~~~~~~~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~G  653 (655)
                      +++||++|+++|||+++|++++|+.|++|||.    .|....++|||+|||||++.     +.+|||||||||++|||+|
T Consensus       122 ~~~ik~~l~~~gPV~v~~~~~~f~~Y~~Giy~----~~~~~~~~HaV~iVGyg~~~-----g~~yWivkNSWG~~WGe~G  192 (215)
T 3i06_A          122 EAQIAAWLAVNGPVAVAVDASSWMTYTGGVMT----SCVSEQLDHGVLLVGYNDSA-----AVPYWIIKNSWTTQWGEEG  192 (215)
T ss_dssp             HHHHHHHHHHHCCEEEEECCTTGGGCCSSEEC----SCCCSCCCEEEEEEEEESSS-----SSCEEEEECSBCTTSTBTT
T ss_pred             HHHHHHHHHHCCCEEEEEEchHHhcCCCCccc----CCCCCccCcEEEEEEEeccC-----CcEEEEEECCCCCCcccCc
Confidence            99999999999999999999889999999996    35455679999999999876     6789999999999999999


Q ss_pred             CC
Q psy11694        654 ML  655 (655)
Q Consensus       654 y~  655 (655)
                      ||
T Consensus       193 y~  194 (215)
T 3i06_A          193 YI  194 (215)
T ss_dssp             EE
T ss_pred             eE
Confidence            97

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A*

Probab=99.98  E-value=3.5e-33  Score=277.91  Aligned_cols=149  Identities=38%  Similarity=0.755  Sum_probs=129.8

Q ss_pred             cccccccccccCCCC--CCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCH
Q psy11694        497 KLSRLATEKLVDCDM--SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEE  574 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~--~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~  574 (655)
                      .+++||+|+|++|..  .+.||+||++..|++|+.++.|+++|++|||.....  .|...+ .....++.+|..++..++
T Consensus        45 ~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~--~C~~~~-~~~~~~i~~~~~v~~~~~  121 (220)
T 8pch_A           45 KMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDD--HCKFQP-DKAIAFVKDVANITMNDE  121 (220)
T ss_dssp             CCCCBCHHHHHHHGGGGTCCGGGCCCHHHHHHHHHHHTCEEBTTTSCCCSSCC--CCCCCG-GGEEECEEEEEECCTTCH
T ss_pred             CCCCCCHHHHhhCcCccCCCCCCCCCHHHHHHHHHHcCCcCcccccCccCCCC--CCCCCC-CcceEEeCCEEEeCCCCH
Confidence            468899999999975  367999999999999999977999999999998766  687654 444578899999988899


Q ss_pred             HHHHHHHHhCCCEEEEEEcc-ccccccCCeeecCCCCCCC--cccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCC
Q psy11694        575 EEMKKWVATRGPLSVGMNAN-GLFYYSGGVIDLNQRLCNP--KAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE  651 (655)
Q Consensus       575 ~~ik~~i~~~GPV~~~~~~~-~~~~y~~Gi~~~~~~~~~~--~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe  651 (655)
                      ++||++|+++|||+++|++. +|+.|++|||..  ..|..  ..++|||+|||||++.     +.+|||||||||++|||
T Consensus       122 ~~ik~~l~~~gPV~~~~~~~~~f~~Y~~Giy~~--~~~~~~~~~~~HaV~iVGyg~~~-----g~~yWivkNSWG~~WGe  194 (220)
T 8pch_A          122 EAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSS--TSCHKTPDKVNHAVLAVGYGEEN-----GIPYWIVKNSWGPQWGM  194 (220)
T ss_dssp             HHHHHHHHHTCCEEEEECCCHHHHTCCSSEECC--SSCCCSTTTCCEEEEEEEEEEET-----TEEEEEEECSBCTTSTB
T ss_pred             HHHHHHHHhcCCEEEEEEeccchhhcCCCcccC--CcCCCCCCcCCcEEEEEEEEccC-----CeeEEEEECCCCcCccc
Confidence            99999999999999999995 688999999973  23432  3689999999999876     67899999999999999


Q ss_pred             CCCC
Q psy11694        652 KVML  655 (655)
Q Consensus       652 ~Gy~  655 (655)
                      +|||
T Consensus       195 ~Gy~  198 (220)
T 8pch_A          195 NGYF  198 (220)
T ss_dssp             TTEE
T ss_pred             CCEE
Confidence            9997

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}

Probab=99.98  E-value=3.4e-33  Score=293.36  Aligned_cols=76  Identities=25%  Similarity=0.340  Sum_probs=71.7

Q ss_pred             CCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccC------------CCCCCCCCcHHHHHHHHHHcC
Q psy11694        307 VISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM------------SNGGCNGGRMDDALQYIIDNG  374 (655)
Q Consensus       307 ~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~------------~~~gC~GG~~~~a~~~~~~~~  374 (655)
                      .+|||||||.||||||||++++||+.++++++..+.||+|+|++|+.            .+.||+||.+..|++||.++ 
T Consensus        21 ~vtpVknQg~cGsCWaFSa~~~lE~~~~~k~~~~~~LSeq~Lvdcd~~ekan~~l~~~g~~~gcdGG~~~~a~~~i~k~-   99 (383)
T 3pw3_A           21 PITSVKNQNRAGTCWCYSSYSFLESELLRMGKGEYDLSEMFTVYNTYLDRADAAVRTHGDVSFSQGGSFYDALYGMETF-   99 (383)
T ss_dssp             CCCCCCBCCBSSCHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHHHHHHHHHHTTTCSCCCSCCCHHHHHHHHHHT-
T ss_pred             CCCCcccCCCCcHHHHHHhHHHHHHHHHHHcCCCCccChHHHHhhchhhhhhhhhhhccCCCCCCCCCHHHHHHHHHHc-
Confidence            57999999999999999999999999999999999999999999974            24799999999999999987 


Q ss_pred             CCCCCCCCC
Q psy11694        375 GVVSDQAYP  383 (655)
Q Consensus       375 Gi~~e~~yP  383 (655)
                      ||+++++||
T Consensus       100 Givpe~~YP  108 (383)
T 3pw3_A          100 GLVPEEEMR  108 (383)
T ss_dssp             CCCBGGGSC
T ss_pred             CcCcHHhCC
Confidence            999999999

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}

Probab=99.98  E-value=4.3e-33  Score=291.23  Aligned_cols=148  Identities=40%  Similarity=0.850  Sum_probs=131.1

Q ss_pred             cccccccccccCCCCC--CCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCH
Q psy11694        497 KLSRLATEKLVDCDMS--NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEE  574 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~--~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~  574 (655)
                      .+++||+|+|++|+..  +.||+||++..|++|+.++ |+++|++|||.....  .|.... .....++.+|..++..++
T Consensus       158 ~~~~LSeQ~LvdC~~~~g~~GC~GG~~~~a~~yi~~~-Gi~~e~~yPY~~~~~--~C~~~~-~~~~~~i~~~~~v~~~~e  233 (329)
T 3qt4_A          158 RLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYIHDY-GIMSESAYPYEAQGD--YCRFDS-SQSVTTLSGYYDLPSGDE  233 (329)
T ss_dssp             CCCCBCHHHHHHHCGGGTCCTTBCCCHHHHHHHHHHS-CBCBTTTSCCCSSCC--CCCCCG-GGCCBCCSEEEECCTTCH
T ss_pred             CcccCCHHHHHHhccccCCCCCCCCChhHHHHHHHHc-CCCcHHHeeeecCCC--CCCCCc-ccceEEeceEEEecCCCH
Confidence            3679999999999863  6799999999999999997 999999999998876  787654 344578899999988899


Q ss_pred             HHHHHHHHhCCCEEEEEEcc-ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCC
Q psy11694        575 EEMKKWVATRGPLSVGMNAN-GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKV  653 (655)
Q Consensus       575 ~~ik~~i~~~GPV~~~~~~~-~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~G  653 (655)
                      ++||++|+++|||+++|++. +|+.|++|||.  ...|+...++|||+|||||+++     +.+|||||||||++|||+|
T Consensus       234 ~~lk~al~~~GPV~v~i~a~~~f~~Y~~GVy~--~~~c~~~~~~HaV~iVGyg~~~-----g~~yWivkNSWG~~WGe~G  306 (329)
T 3qt4_A          234 NSLADAVGQAGPVAVAIDATDELQFYSGGLFY--DQTCNQSDLNHGVLVVGYGSDN-----GQDYWILKNSWGSGWGESG  306 (329)
T ss_dssp             HHHHHHHHHTCCEEEEECCCGGGTTEEEEEEC--CSSCCSSCCCEEEEEEEEEEET-----TEEEEEEECSBCTTSTBTT
T ss_pred             HHHHHHHHhCCCEEEEEecChhhhhccCceee--cCCCCCCcCCEEEEEEEEEeeC-----CccEEEEEeCCCCcccCCc
Confidence            99999999999999999996 78899999997  3346656789999999999876     7789999999999999999


Q ss_pred             CC
Q psy11694        654 ML  655 (655)
Q Consensus       654 y~  655 (655)
                      ||
T Consensus       307 Y~  308 (329)
T 3qt4_A          307 YW  308 (329)
T ss_dssp             EE
T ss_pred             EE
Confidence            97

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A

Probab=99.98  E-value=3.3e-33  Score=291.28  Aligned_cols=149  Identities=42%  Similarity=0.816  Sum_probs=130.6

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHH
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEE  576 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  576 (655)
                      ++++||+|+|++|+..+.||.||++..|++|+.++.|+++|++|||.....  .|.... .....++.+|..++..++++
T Consensus       143 ~~~~LSeq~lvdC~~~~~gC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~--~C~~~~-~~~~~~i~~~~~v~~~~~~~  219 (314)
T 1by8_A          143 KLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEE--SCMYNP-TGKAAKCRGYREIPEGNEKA  219 (314)
T ss_dssp             CCCCBCHHHHHTTCTTSCGGGCCCSHHHHHHHHHTTCBCBTTTSCCCSSCC--CCCCCG-GGCCBCCSCEEECCSSCHHH
T ss_pred             CCcccCHHHHHHhcCCCCCCcCCCHHHHHHHHHHcCCcCcHhhCCCCCCCC--CcCCCC-ccceeEECcEEEecCCCHHH
Confidence            468999999999987778999999999999999767999999999998776  787644 23456788999998889999


Q ss_pred             HHHHHHhCCCEEEEEEcc--ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCCC
Q psy11694        577 MKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVM  654 (655)
Q Consensus       577 ik~~i~~~GPV~~~~~~~--~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy  654 (655)
                      ||++|+++|||+++|++.  +|+.|++|||..  ..|+...++|||+|||||+++     +.+|||||||||++|||+||
T Consensus       220 i~~al~~~GPV~v~i~~~~~~f~~Y~~Gvy~~--~~c~~~~~~HaV~iVGyg~~~-----g~~yWivkNSWG~~WGe~GY  292 (314)
T 1by8_A          220 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYD--ESCNSDNLNHAVLAVGYGIQK-----GNKHWIIKNSWGENWGNKGY  292 (314)
T ss_dssp             HHHHHHHHCCEEEEECCCSHHHHTEEEECBCC--TTCCSSCCCEEEEEEEEEEET-----TEEEEEEECSBTTTSTBTTE
T ss_pred             HHHHHHHcCCEEEEEEeChHHhhhccCceecC--CCCCCCCCCeEEEEEEEeccC-----CceEEEEEcCCCCCcCcCCE
Confidence            999999999999999995  588999999972  336666789999999999875     67899999999999999999


Q ss_pred             C
Q psy11694        655 L  655 (655)
Q Consensus       655 ~  655 (655)
                      |
T Consensus       293 ~  293 (314)
T 1by8_A          293 I  293 (314)
T ss_dssp             E
T ss_pred             E
Confidence            7

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ...

Probab=99.98  E-value=7.7e-33  Score=275.20  Aligned_cols=152  Identities=39%  Similarity=0.770  Sum_probs=128.0

Q ss_pred             cccccccccccCCCCC--CCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCH
Q psy11694        497 KLSRLATEKLVDCDMS--NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEE  574 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~--~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~  574 (655)
                      ++++||+|+|++|...  +.||+||++..|++|+.++.|+++|++|||.....  .|.... ....+++.+|..++. ++
T Consensus        44 ~~~~lS~q~l~dC~~~~g~~gC~GG~~~~a~~y~~~~~Gi~~e~~yPY~~~~~--~C~~~~-~~~~~~i~~~~~v~~-~~  119 (220)
T 2xu3_A           44 RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE--SCKYNP-KYSVANDTGFVDIPK-QE  119 (220)
T ss_dssp             CCCCBCHHHHHHHCTTTTCCTTBCCCHHHHHHHHHHHTCEEBTTTSCCCSSCC--CCCCCG-GGEEECCSEEEECCS-CH
T ss_pred             CceecCHHHHHhhccCCCCCCCCCCCHHHHHHHHHHhCCcccccccCCcccCc--CccCCC-CCcceeeeeEEEeCC-CH
Confidence            4689999999999752  67999999999999997556999999999998776  687654 334678899999987 89


Q ss_pred             HHHHHHHHhCCCEEEEEEcc--ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCC
Q psy11694        575 EEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK  652 (655)
Q Consensus       575 ~~ik~~i~~~GPV~~~~~~~--~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~  652 (655)
                      ++||++|+++|||+++|++.  +|+.|++|||..  ..|+...++|||+|||||++... ..+.+|||||||||++|||+
T Consensus       120 ~~ik~~l~~~GPV~v~~~~~~~~f~~Y~~Gvy~~--~~c~~~~~~HaV~iVGygd~~~~-~~g~~yWivkNSWG~~WG~~  196 (220)
T 2xu3_A          120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFE--PDCSSEDMDHGVLVVGYGFESTE-SDNNKYWLVKNSWGEEWGMG  196 (220)
T ss_dssp             HHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECC--TTCCSSCCCEEEEEEEEEECCCS-SSCCEEEEEECSBCTTSTBT
T ss_pred             HHHHHHHHhcCCEEEEEeecCcccccccceEEcC--CCCCCCCCCeEEEEEEcCCcccc-CCCCcEEEEEeCCCCCcccC
Confidence            99999999999999999995  588999999972  23665678999999999953211 12678999999999999999


Q ss_pred             CCC
Q psy11694        653 VML  655 (655)
Q Consensus       653 Gy~  655 (655)
                      |||
T Consensus       197 Gy~  199 (220)
T 2xu3_A          197 GYV  199 (220)
T ss_dssp             TEE
T ss_pred             cEE
Confidence            997

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A*

Probab=99.98  E-value=6.4e-33  Score=274.77  Aligned_cols=146  Identities=36%  Similarity=0.686  Sum_probs=127.4

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHH
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEE  576 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  576 (655)
                      .+++||+|+|++|...+.||+||++..|++|++++ |+++|++|||.....  .|.........+++.+|..++..+++.
T Consensus        44 ~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~yi~~~-Gi~~e~~yPY~~~~~--~C~~~~~~~~~~~i~~y~~v~~~~~~~  120 (216)
T 1ppo_A           44 KLVELSEQELVDCERRSHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQG--TCRAKQVGGPIVKTSGVGRVQPNNEGN  120 (216)
T ss_dssp             CCCCBCHHHHHHHCSSSCTTBCCCHHHHHHHHHHH-CBCBTTTSCCCSSCC--CCCGGGCCSCCBCCCEEEECCSSCHHH
T ss_pred             CceecCHHHHHhccCCCCCCCCCCHHHHHHHHHHh-CcCccccCCccCCCC--CcCCCCCCCceEEeccEEEECCCCHHH
Confidence            46899999999998777899999999999999997 999999999998766  687543234467889999998889999


Q ss_pred             HHHHHHhCCCEEEEEEcc--ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCCC
Q psy11694        577 MKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVM  654 (655)
Q Consensus       577 ik~~i~~~GPV~~~~~~~--~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy  654 (655)
                      ||++|++ |||+++|++.  +|+.|++|||.   ..|+.. .+|||+|||||++.     +.+|||||||||++|||+||
T Consensus       121 i~~~l~~-GPV~v~~~~~~~~f~~Y~~Giy~---~~~~~~-~~HaV~iVGyg~~~-----g~~ywivkNSWG~~WG~~Gy  190 (216)
T 1ppo_A          121 LLNAIAK-QPVSVVVESKGRPFQLYKGGIFE---GPCGTK-VDHAVTAVGYGKSG-----GKGYILIKNSWGTAWGEKGY  190 (216)
T ss_dssp             HHHHHHH-SCEEEEECCCSHHHHHCCSSEEC---CSCCSC-CCEEEEEEEEEEET-----TEEEEEEECSBCSSSTBTTE
T ss_pred             HHHHHHh-CCEEEEEecCChhhhhcCCceEC---CCCCCC-CCEEEEEEEeeccC-----CccEEEEEeCCCCCcccCcE
Confidence            9999987 9999999994  57889999997   356554 69999999999986     67899999999999999999


Q ss_pred             C
Q psy11694        655 L  655 (655)
Q Consensus       655 ~  655 (655)
                      |
T Consensus       191 ~  191 (216)
T 1ppo_A          191 I  191 (216)
T ss_dssp             E
T ss_pred             E
Confidence            7

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1

Probab=99.98  E-value=6.7e-33  Score=275.60  Aligned_cols=146  Identities=40%  Similarity=0.829  Sum_probs=127.9

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHH
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEE  576 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  576 (655)
                      .+++||+|+|++|...+.||.||++..|++|++++.|+++|++|||.....  .|.... ....+++..|..++..+++.
T Consensus        46 ~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~y~~~~~Gi~~e~~yPY~~~~~--~C~~~~-~~~~~~i~~y~~v~~~~~~~  122 (221)
T 1cqd_A           46 DLISLSEQQLVDCTTANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDG--ICNSTV-NAPVVSIDSYENVPSHNEQS  122 (221)
T ss_dssp             CCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHHTSBCBTTTSCCCSSCC--CCCSSS-CCCSBCCSEEEECCSSCHHH
T ss_pred             CeeeeccceeEECCCCCCCCCCCCHHHHHHHHHHhCCccccccCCccCCCC--CcCCCC-CCceEEeccEEEeCCchHHH
Confidence            468999999999987678999999999999999977999999999998766  687644 34457889999998888999


Q ss_pred             HHHHHHhCCCEEEEEEcc--ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCCC
Q psy11694        577 MKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVM  654 (655)
Q Consensus       577 ik~~i~~~GPV~~~~~~~--~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy  654 (655)
                      ||++|++ |||+++|++.  +|+.|++|||.   ..|+. .++|||+|||||+++     +.+|||||||||++|||+||
T Consensus       123 i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~---~~~~~-~~~HaV~iVGyg~~~-----g~~yWivkNSWG~~WGe~Gy  192 (221)
T 1cqd_A          123 LQKAVAN-QPVSVTMDAAGRDFQLYRSGIFT---GSCNI-SANHALTVVGYGTEN-----DKDFWIVKNSWGKNWGESGY  192 (221)
T ss_dssp             HHHHHTT-SCEEEEECCCSHHHHTCCSSEEC---CCCCC-CCCEEEEEEEEEEET-----TEEEEEEECSBCTTSTBTTE
T ss_pred             HHHHHHh-CCEEEEEeccCcccccccCcccc---CCCCC-cCCeEEEEEEEcccC-----CCcEEEEEeCCCCCcccCCE
Confidence            9999975 9999999995  68899999997   34654 589999999999875     67899999999999999999


Q ss_pred             C
Q psy11694        655 L  655 (655)
Q Consensus       655 ~  655 (655)
                      |
T Consensus       193 ~  193 (221)
T 1cqd_A          193 I  193 (221)
T ss_dssp             E
T ss_pred             E
Confidence            7

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A*

Probab=99.98  E-value=6e-33  Score=280.01  Aligned_cols=149  Identities=35%  Similarity=0.736  Sum_probs=129.0

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeee---EEcCCCC
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEY---SRIPYGE  573 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~---~~~~~~~  573 (655)
                      ++++||+|+|++|...+.||.||++..|++|+.++.|+++|++|||.....  .|.... ....+++.+|   ..++..+
T Consensus        45 ~~~~LS~q~lvdC~~~~~gC~GG~~~~a~~y~~~~~Gi~~e~~yPY~~~~~--~C~~~~-~~~~~~i~~y~~~~~v~~~~  121 (246)
T 2b1m_A           45 NLVSLSEQELIDCVDESEGCYNGWHYQSFEWVVKHGGIASEADYPYKARDG--KCKANE-IQDKVTIDNYGVQILSNEST  121 (246)
T ss_dssp             CCCCBCHHHHHHHCTTSBTTTBCCHHHHHHHHHHTTCBCBTTTSCCCSSCC--CCCGGG-CCCCBCCSEEEEEECCTTSC
T ss_pred             CCcccCHHHHHhhcCCCCCCCCCCHHHHHHHHHHhCCcCccccccccCCCC--cCcCCC-CCCceeEcCcceeeecCCCh
Confidence            468999999999987678999999999999999967999999999998766  687543 3345678888   8888778


Q ss_pred             HHHHHHHHHh---CCCEEEEEEccccccccCCeeecCCCCCCCcc-cCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCc
Q psy11694        574 EEEMKKWVAT---RGPLSVGMNANGLFYYSGGVIDLNQRLCNPKA-QNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDW  649 (655)
Q Consensus       574 ~~~ik~~i~~---~GPV~~~~~~~~~~~y~~Gi~~~~~~~~~~~~-~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~W  649 (655)
                      +++||++|++   +|||+++|++.+|+.|++|||..  ..|+... ++|||+|||||+++     +.+|||||||||++|
T Consensus       122 ~~~ik~~l~~~~~~GPV~v~i~~~~f~~Y~~Giy~~--~~c~~~~~~~HaV~iVGyg~~~-----g~~yWivkNSWG~~W  194 (246)
T 2b1m_A          122 ESEAESSLQSFVLEQPISVSIDAKDFHFYSGGIYDG--GNCSSPYGINHFVLIVGYGSED-----GVDYWIAKNSWGEDW  194 (246)
T ss_dssp             HHHHHHHHHHHHHHSCEEEEECCTTGGGCCSSEECC--TTCCSSCCCCEEEEEEEEEEET-----TEEEEEEECSBCTTS
T ss_pred             HHHHHHHHHhhccCCCEEEEEEcchhhcccceeecC--CCCCCCCcCceEEEEEEEeccC-----CceEEEEEeCCCCcc
Confidence            9999999998   69999999997788999999972  2466543 79999999999875     678999999999999


Q ss_pred             CCCCCC
Q psy11694        650 GEKVML  655 (655)
Q Consensus       650 Ge~Gy~  655 (655)
                      ||+|||
T Consensus       195 Ge~Gy~  200 (246)
T 2b1m_A          195 GIDGYI  200 (246)
T ss_dssp             TBTTEE
T ss_pred             cCCcEE
Confidence            999997

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0

Probab=99.98  E-value=4.8e-33  Score=291.65  Aligned_cols=148  Identities=37%  Similarity=0.755  Sum_probs=132.4

Q ss_pred             ccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHHH
Q psy11694        498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEM  577 (655)
Q Consensus       498 ~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~i  577 (655)
                      +++||+|+|++|+..+.||+||++..|++|+.++.||++|++|||...+.  .|.... .....++.+|..++..++++|
T Consensus       162 ~~~LSeQ~LvdC~~~~~GC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~--~C~~~~-~~~~~~i~~~~~v~~~~e~~l  238 (331)
T 3qj3_A          162 DSSVSEQQLVDCVPNALGCSGGWMNDAFTYVAQNGGIDSEGAYPYEMADG--NCHYDP-NQVAARLSGYVYLSGPDENML  238 (331)
T ss_dssp             CCCBCHHHHHHHCTTSCGGGCCCHHHHHHHHHHHTCEEBTTTSCCCSSCC--CCCCCT-TSEEECCSEEEEESSCCHHHH
T ss_pred             ccCcCHHHHhhhccCCCCCCCCCHHHHHHHHHHcCCcCcccccCccCCCC--CCCCCc-ccceeEeeEEEEeCCCCHHHH
Confidence            68899999999987788999999999999999988999999999998876  787654 445678999999988899999


Q ss_pred             HHHHHhCCCEEEEEEcc-ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCCCC
Q psy11694        578 KKWVATRGPLSVGMNAN-GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVML  655 (655)
Q Consensus       578 k~~i~~~GPV~~~~~~~-~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy~  655 (655)
                      |++|+++|||+++|++. +|+.|++|||.  ...|+...++|||+|||||+++     +.+|||||||||++|||+|||
T Consensus       239 k~al~~~GPV~v~i~a~~~f~~Y~~Gvy~--~~~c~~~~~~HaV~iVGyg~~~-----g~~yWivkNSWG~~WGe~GY~  310 (331)
T 3qj3_A          239 ADMVATKGPVAVAFDADDPFGSYSGGVYY--NPTCETNKFTHAVLIVGYGNEN-----GQDYWLVKNSWGDGWGLDGYF  310 (331)
T ss_dssp             HHHHHHHCCEEEEECCCTTGGGEEEEEEC--CTTCCSSCCCEEEEEEEEEEET-----TEEEEEEECSBCTTSTBTTEE
T ss_pred             HHHHHhCCCEEEEEEcccccccccCceEe--CCCCCCCcCCEEEEEEEEeccC-----CceEEEEEcCCCCCcCCCCEE
Confidence            99999999999999994 48899999997  3346666789999999999876     778999999999999999997

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E*

Probab=99.97  E-value=9.7e-33  Score=273.86  Aligned_cols=146  Identities=40%  Similarity=0.757  Sum_probs=127.1

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHH
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEE  576 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  576 (655)
                      .+++||+|+|++|...+.||.||++..|++|++++ |+++|++|||.....  .|.........+++.+|..++..+++.
T Consensus        44 ~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~-Gi~~e~~yPY~~~~~--~C~~~~~~~~~~~i~~y~~v~~~~~~~  120 (218)
T 1yal_A           44 NLLELSEQELVDCDKHSYGCKGGYQTTSLQYVANN-GVHTSKVYPYQAKQY--KCRATDKPGPKVKITGYKRVPSNCETS  120 (218)
T ss_dssp             CCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHH-CBCBTTTSCCCSSCC--CCCGGGCCSCCBCCSEEEECCSSBHHH
T ss_pred             CccccCHHHHHHhcCCCCCCCCCCHHHHHHHHHHc-CCCccccccccCCCC--CcccCcCCCceEEEeeEEEeCCCCHHH
Confidence            46899999999998667899999999999999997 999999999998766  687543234457899999998889999


Q ss_pred             HHHHHHhCCCEEEEEEcc--ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCCC
Q psy11694        577 MKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVM  654 (655)
Q Consensus       577 ik~~i~~~GPV~~~~~~~--~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy  654 (655)
                      ||++|++ |||+++|++.  +|+.|++|||.   ..|+.. .+|||+|||||++.     +.+|||||||||++|||+||
T Consensus       121 i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~---~~~~~~-~~HaV~iVGyg~~~-----g~~yWivkNSWG~~WGe~Gy  190 (218)
T 1yal_A          121 FLGALAN-QPLSVLVEAGGKPFQLYKSGVFD---GPCGTK-LDHAVTAVGYGTSD-----GKNYIIIKNSWGPNWGEKGY  190 (218)
T ss_dssp             HHHHHTT-SCEEEEECCCSHHHHTCCSSEEC---CSCCSC-CCEEEEEEEEEEET-----TEEEEEEECSBCTTSTBTTE
T ss_pred             HHHHHHh-CCEEEEEeccchhccccCCceEC---CCCCCC-CCEEEEEEEeeccC-----CccEEEEEeCCCCCcccCcE
Confidence            9999986 9999999994  57789999997   356553 69999999999986     67899999999999999999


Q ss_pred             C
Q psy11694        655 L  655 (655)
Q Consensus       655 ~  655 (655)
                      |
T Consensus       191 ~  191 (218)
T 1yal_A          191 M  191 (218)
T ss_dssp             E
T ss_pred             E
Confidence            7

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1

Probab=99.97  E-value=1.4e-32  Score=271.98  Aligned_cols=145  Identities=41%  Similarity=0.815  Sum_probs=126.9

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHH
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEE  576 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  576 (655)
                      ++++||+|+|++|...+.||.||++..|++|++++.|+++|++|||...+.  .|....  ...+++.+|..++..+++.
T Consensus        44 ~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~--~C~~~~--~~~~~i~~~~~v~~~~~~~  119 (215)
T 1iwd_A           44 QLISLSEQELVDCDTASHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQG--SCKPYR--LRVVSINGFQRVTRNNESA  119 (215)
T ss_dssp             CCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHHTCBCBTTTSCCCSSCC--CCCTTC--CCCBCCCEEEECCTTCHHH
T ss_pred             CccccChhHeEECcCCCCCCCCCCHHHHHHHHHHhCCcccccccCccCCCC--CCCCCC--CceEEeCcEEEeCCCcHHH
Confidence            468999999999987678999999999999999877999999999998765  687544  2457888999998888999


Q ss_pred             HHHHHHhCCCEEEEEEcc--ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCCC
Q psy11694        577 MKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVM  654 (655)
Q Consensus       577 ik~~i~~~GPV~~~~~~~--~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy  654 (655)
                      ||++|++ |||+++|++.  +|+.|++|||.   ..|+. .++|||+|||||+++     +.+|||||||||++|||+||
T Consensus       120 ik~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~---~~c~~-~~~HaV~iVGyg~~~-----g~~yWivkNSWG~~WGe~Gy  189 (215)
T 1iwd_A          120 LQSAVAS-QPVSVTVEAAGAPFQHYSSGIFT---GPCGT-AQNHGVVIVGYGTQS-----GKNYWIVRNSWGQNWGNQGY  189 (215)
T ss_dssp             HHHHHHH-SCEEEEECCCSHHHHTCCSSEEC---CCCCC-CCCEEEEEEEEEEET-----TEEEEEEECSBCTTSTBTTE
T ss_pred             HHHHHHh-CCEEEEEecCCcchhhcCCceEC---CCCCC-cCCEEEEEEEEeccC-----CccEEEEEeCCCCCcCCCcE
Confidence            9999986 9999999995  58899999997   34654 579999999999885     67899999999999999999


Q ss_pred             C
Q psy11694        655 L  655 (655)
Q Consensus       655 ~  655 (655)
                      |
T Consensus       190 ~  190 (215)
T 1iwd_A          190 I  190 (215)
T ss_dssp             E
T ss_pred             E
Confidence            7

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ...

Probab=99.97  E-value=1.1e-32  Score=273.88  Aligned_cols=148  Identities=44%  Similarity=0.868  Sum_probs=128.9

Q ss_pred             cccccccccccCCC-C--CCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCC
Q psy11694        497 KLSRLATEKLVDCD-M--SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGE  573 (655)
Q Consensus       497 ~~~~ls~q~l~~C~-~--~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~  573 (655)
                      .+++||+|+|++|. .  .+.||.||++..|++|+.++.|+++|++|||.....  .|.... .....++..|..++..+
T Consensus        45 ~~~~lS~q~l~~c~~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~--~C~~~~-~~~~~~i~~~~~~~~~~  121 (218)
T 3ovx_A           45 KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ--KCQYDS-KYRAATCSKYTELPYGR  121 (218)
T ss_dssp             CCCCBCHHHHHHHSCGGGTCCGGGCCCHHHHHHHHHHHTCEEBTTTSCCCSSCC--CCCCCG-GGEEECCCEEEECCTTC
T ss_pred             CccccCHHHheeccCCcCCCCCCCCCCHHHHHHHHHHhCCcCcccccCccCCCC--cccCCC-ccceeeeccEEEeCCCC
Confidence            46899999999998 3  368999999999999998867999999999998876  687654 44567889999998889


Q ss_pred             HHHHHHHHHhCCCEEEEEEcc--ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCC
Q psy11694        574 EEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE  651 (655)
Q Consensus       574 ~~~ik~~i~~~GPV~~~~~~~--~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe  651 (655)
                      +++||++|+++|||+++|++.  +|+.|++|||..  ..| ...++|||+|||||+++     +.+|||||||||++|||
T Consensus       122 ~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~--~~~-~~~~~HaV~iVGyg~~~-----g~~ywivkNSWG~~WG~  193 (218)
T 3ovx_A          122 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYE--PSC-TQNVNHGVLVVGYGDLN-----GKEYWLVKNSWGHNFGE  193 (218)
T ss_dssp             HHHHHHHHHHTCCEEEEECCCSHHHHHCCSSEECC--TTC-CSCCCEEEEEEEEEEET-----TEEEEEEECSBCTTSTB
T ss_pred             HHHHHHHHHhcCCEEEEEEecchhhhcccCceecC--CCC-CcccCcEEEEEEEeccC-----CceEEEEECCCCCcccc
Confidence            999999999999999999994  578999999973  234 45689999999999886     67899999999999999


Q ss_pred             CCCC
Q psy11694        652 KVML  655 (655)
Q Consensus       652 ~Gy~  655 (655)
                      +|||
T Consensus       194 ~Gy~  197 (218)
T 3ovx_A          194 EGYI  197 (218)
T ss_dssp             TTEE
T ss_pred             CCEE
Confidence            9997

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}

Probab=99.97  E-value=8.9e-33  Score=287.55  Aligned_cols=148  Identities=36%  Similarity=0.748  Sum_probs=129.7

Q ss_pred             cccccccccccCCCC--CCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCH
Q psy11694        497 KLSRLATEKLVDCDM--SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEE  574 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~--~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~  574 (655)
                      .+++||+|+|++|+.  .+.||.||++..|++|+.. .|+++|++|||.....  .|.... .....++.+|..++..++
T Consensus       135 ~~~~LS~q~lvdC~~~~~~~gC~GG~~~~a~~yi~~-~Gi~~e~~yPY~~~~~--~C~~~~-~~~~~~i~~~~~v~~~~~  210 (310)
T 2o6x_A          135 TSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYLKQ-FGLETESSYPYTAVEG--QCRYNK-QLGVAKVTGFYTVHSGSE  210 (310)
T ss_dssp             SCCCBCHHHHHHHCGGGTCCGGGCCCHHHHHHHHTT-SCBCBTTTSCCCSSCC--CCCCCG-GGCCEEEEEEEEECSCCH
T ss_pred             CCcCcCHHHHHHhhhccCCCCCCCCCHHHHHHHHHH-CCcCchhcCCCCCCCC--CccCCC-CCCceEeCeEEEeCCCCH
Confidence            468999999999975  3789999999999999995 6999999999998766  787644 334678999999987899


Q ss_pred             HHHHHHHHhCCCEEEEEEcc-ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCC
Q psy11694        575 EEMKKWVATRGPLSVGMNAN-GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKV  653 (655)
Q Consensus       575 ~~ik~~i~~~GPV~~~~~~~-~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~G  653 (655)
                      ++||++|+++|||+++|++. +|+.|++|||..  ..|+...++|||+|||||+++     +.+|||||||||++|||+|
T Consensus       211 ~~i~~~l~~~GPV~v~i~~~~~f~~Y~~Gvy~~--~~c~~~~~~HaV~iVGyg~~~-----g~~yWivkNSWG~~WGe~G  283 (310)
T 2o6x_A          211 VELKNLVGAEGPAAVAVDVESDFMMYRSGIYQS--QTCSPLRVNHAVLAVGYGTQG-----GTDYWIVKNSWGLSWGERG  283 (310)
T ss_dssp             HHHHHHHHHHCCEEEEECCCHHHHTEEEEEECC--SSCCTTCCCEEEEEEEEEEET-----TEEEEEEECSBCTTSTBTT
T ss_pred             HHHHHHHHhcCCeEEEEecchhhhhCCCceecC--CCCCCCCCCEEEEEEEEeccC-----CceEEEEEeCCCCccCCCc
Confidence            99999999999999999995 688999999972  346656789999999999885     7789999999999999999


Q ss_pred             CC
Q psy11694        654 ML  655 (655)
Q Consensus       654 y~  655 (655)
                      ||
T Consensus       284 Y~  285 (310)
T 2o6x_A          284 YI  285 (310)
T ss_dssp             EE
T ss_pred             EE
Confidence            97

>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} SCOP: d.3.1.1 PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A

Probab=99.97  E-value=1.1e-32  Score=274.12  Aligned_cols=147  Identities=40%  Similarity=0.825  Sum_probs=127.4

Q ss_pred             cccccccccccCCCCC--CCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCH
Q psy11694        497 KLSRLATEKLVDCDMS--NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEE  574 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~--~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~  574 (655)
                      .+++||+|+|++|...  +.||.||++..|++|+.++.|+++|++|||.....  .|.........+++..|..++..++
T Consensus        44 ~~~~LS~q~l~dC~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~--~C~~~~~~~~~~~i~~~~~v~~~~~  121 (220)
T 3p5u_A           44 DLISLSEQELVDCGRTQNTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEG--QCNLDLQQEKYVSIDTYENVPYNNE  121 (220)
T ss_dssp             CCCCBCHHHHHHHCCCSSCCTTBCCCHHHHHHHHHHHTCBCBTTTSCCCSSCC--CCCHHHHTCCSBCCCEEEECCTTCH
T ss_pred             CCCCcCHhHcEECCCCCCCCCCCCCCHHHHHHHHHHhCCcCcccccccccCCC--CcCcCCCCCceEEEccEEEeCCCcH
Confidence            4689999999999865  78999999999999999977999999999998876  6875443334567889999988899


Q ss_pred             HHHHHHHHhCCCEEEEEEcc--ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCC
Q psy11694        575 EEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK  652 (655)
Q Consensus       575 ~~ik~~i~~~GPV~~~~~~~--~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~  652 (655)
                      +.||++| .+|||+++|++.  +|+.|++|||.   ..|+.. .+|||+|||||+++     +.+|||||||||++|||+
T Consensus       122 ~~l~~~l-~~GPV~v~~~~~~~~f~~Y~~Giy~---~~~~~~-~~HaV~iVGyg~~~-----g~~yWivkNSWG~~WGe~  191 (220)
T 3p5u_A          122 WALQTAV-AYQPVSVALEAAGYNFQHYSSGIFT---GPCGTA-VDHAVTIVGYGTEG-----GIDYWIVKNSWGTTWGEE  191 (220)
T ss_dssp             HHHHHHH-TTSCEEEEECCCSHHHHTCCSSEEC---CCCCCS-CCEEEEEEEEEEET-----TEEEEEEECSBCTTSTBT
T ss_pred             HHHHHHH-hcCCEEEEEecCchhhccccCceEC---CCCCCc-cceEEEEEEEecCC-----CceEEEEECCCCCCcccC
Confidence            9999998 689999999994  58899999997   355543 69999999999776     678999999999999999


Q ss_pred             CCC
Q psy11694        653 VML  655 (655)
Q Consensus       653 Gy~  655 (655)
                      |||
T Consensus       192 Gy~  194 (220)
T 3p5u_A          192 GYM  194 (220)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            997

>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*

Probab=99.97  E-value=1.2e-32  Score=274.42  Aligned_cols=146  Identities=30%  Similarity=0.595  Sum_probs=127.9

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHH
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEE  576 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  576 (655)
                      .+++||+|+|++|.. +.||+||++..|++|++++ |+++|++|||.....  .|..  .....+++.+|..++..++++
T Consensus        53 ~~~~lS~q~l~dc~~-~~gC~GG~~~~a~~~~~~~-Gi~~e~~yPY~~~~~--~C~~--~~~~~~~i~~~~~v~~~~~~~  126 (222)
T 3f5v_A           53 QSLDLAEQELVDCAS-QHGCHGDTIPRGIEYIQHN-GVVQESYYRYVAREQ--SCRR--PNAQRFGISNYCQIYPPNANK  126 (222)
T ss_dssp             CCCCBCHHHHHHHTC-SSTTBCCCHHHHHHHHHHH-CEEBGGGSCCCSSCC--CCCC--CSSCEECCSEEEECCSCCHHH
T ss_pred             CCCCcCHHHHHhCcC-CCCCCCCCHHHHHHHHHHc-CCCchhhCCCcccCC--CccC--CcCcceeeccEEEeCCCCHHH
Confidence            357899999999987 8899999999999999996 999999999998776  6872  245678899999998889999


Q ss_pred             HHHHHHh-CCCEEEEEEcc---ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCC
Q psy11694        577 MKKWVAT-RGPLSVGMNAN---GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK  652 (655)
Q Consensus       577 ik~~i~~-~GPV~~~~~~~---~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~  652 (655)
                      ||++|++ +|||+++|++.   +|+.|++|++.  ...+....++|||+|||||+++     +.+|||||||||++|||+
T Consensus       127 ik~~l~~~~gpV~v~~~~~~~~~f~~Y~~gi~~--~~~~~~~~~~HaV~iVGyg~~~-----g~~ywivkNSWG~~WGe~  199 (222)
T 3f5v_A          127 IREALAQTHSAIAVIIGIKDLDAFRHYDGRTII--QRDNGYQPNYHAVNIVGYSNAQ-----GVDYWIVRNSWDTNWGDN  199 (222)
T ss_dssp             HHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCB--CCCCSSSCEEEEEEEEEEEEET-----TEEEEEEECSBCTTSTBT
T ss_pred             HHHHHHhcCCCEEEEEEeccchhhhccCCCcee--cCCCCCCccCcEEEEEEEeccC-----CCEEEEEEcCCCCCcccC
Confidence            9999999 89999999983   47899999875  2345556789999999999876     678999999999999999


Q ss_pred             CCC
Q psy11694        653 VML  655 (655)
Q Consensus       653 Gy~  655 (655)
                      |||
T Consensus       200 Gy~  202 (222)
T 3f5v_A          200 GYG  202 (222)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            997

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}

Probab=99.97  E-value=9.4e-33  Score=288.02  Aligned_cols=148  Identities=44%  Similarity=0.865  Sum_probs=129.5

Q ss_pred             cccccccccccCCC-C--CCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCC
Q psy11694        497 KLSRLATEKLVDCD-M--SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGE  573 (655)
Q Consensus       497 ~~~~ls~q~l~~C~-~--~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~  573 (655)
                      .+++||+|+|++|+ .  .+.||+||++..|++|+.++.|+++|++|||.....  .|.... .....++.+|..++..+
T Consensus       142 ~~~~LSeq~lvdC~~~~~~~~gC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~--~C~~~~-~~~~~~i~~~~~v~~~~  218 (315)
T 2c0y_A          142 KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ--KCQYDS-KYRAATCSKYTELPYGR  218 (315)
T ss_dssp             CCCCBCHHHHHHHSCGGGTCCGGGCBCHHHHHHHHHHHTCEEBTTTSCCCSSCC--CCCCCG-GGEEECCCEEEECCTTC
T ss_pred             CCcCcCHHHHHhhcccccCCCCCCCCCHHHHHHHHHHhCCcCchhcCCCccCCC--CcccCC-cccccccCCeEEeCCCC
Confidence            46899999999998 4  478999999999999999767999999999998776  787654 33457889999998889


Q ss_pred             HHHHHHHHHhCCCEEEEEEcc--ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCC
Q psy11694        574 EEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE  651 (655)
Q Consensus       574 ~~~ik~~i~~~GPV~~~~~~~--~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe  651 (655)
                      +++||++|+++|||+++|++.  +|+.|++|||..  ..|+. .++|||+|||||+++     +.+|||||||||++|||
T Consensus       219 ~~~i~~al~~~GPV~v~i~~~~~~f~~Y~~Gvy~~--~~c~~-~~~HaV~iVGyg~~~-----g~~yWivkNSWG~~WGe  290 (315)
T 2c0y_A          219 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYE--PSCTQ-NVNHGVLVVGYGDLN-----GKEYWLVKNSWGHNFGE  290 (315)
T ss_dssp             HHHHHHHHHHTCCEEEEECCCSHHHHTEEEEEECC--TTCCS-CCCEEEEEEEEEEET-----TEEEEEEECSBCTTSTB
T ss_pred             HHHHHHHHHHcCCEEEEEecCchhhhccCCCcccC--CCCCC-cCCEEEEEEEEeecC-----CCcEEEEEcCCCCCcCC
Confidence            999999999999999999995  588999999972  23665 689999999999875     67899999999999999


Q ss_pred             CCCC
Q psy11694        652 KVML  655 (655)
Q Consensus       652 ~Gy~  655 (655)
                      +|||
T Consensus       291 ~GY~  294 (315)
T 2c0y_A          291 EGYI  294 (315)
T ss_dssp             TTEE
T ss_pred             CcEE
Confidence            9997

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1

Probab=99.97  E-value=2.1e-32  Score=284.21  Aligned_cols=144  Identities=30%  Similarity=0.598  Sum_probs=126.8

Q ss_pred             cccccccccccCCCCCC-CCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHH
Q psy11694        497 KLSRLATEKLVDCDMSN-GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEE  575 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~-~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~  575 (655)
                      .+++||+|+|++|+  + .||.||++..|++|+.+. |+++|++|||.....  .|. .. ....+++.+|..++..+++
T Consensus       133 ~~~~LSeq~lvdC~--~~~GC~GG~~~~a~~yi~~~-Gi~~e~~yPY~~~~~--~C~-~~-~~~~~~i~~y~~v~~~~~~  205 (312)
T 1xkg_A          133 QSLDLAEQELVDCA--SQHGCHGDTIPRGIEYIQHN-GVVQESYYRYVAREQ--SCR-RP-NAQRFGISNYCQIYPPNAN  205 (312)
T ss_dssp             CCCCBCHHHHHHHT--CSSTTBCCCHHHHHHHHHHH-CEEBGGGSCCCSSCC--CCC-CC-SSCEECCSEEEECCSCCHH
T ss_pred             CCCCcCHHHHHhcc--CCCCCCCCCHHHHHHHHHHc-CCCccccCCccCCCC--CCC-CC-CCceEEEeeEEEeCCCCHH
Confidence            36899999999997  4 899999999999999994 999999999998776  787 33 4456889999999878999


Q ss_pred             HHHHHHHh-CCCEEEEEEcc---ccccccCCeeecCCCCCC-CcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcC
Q psy11694        576 EMKKWVAT-RGPLSVGMNAN---GLFYYSGGVIDLNQRLCN-PKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG  650 (655)
Q Consensus       576 ~ik~~i~~-~GPV~~~~~~~---~~~~y~~Gi~~~~~~~~~-~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WG  650 (655)
                      +||++|++ +|||+++|++.   +|+.|++|||..  ..|+ ... +|||+|||||+++     +.+|||||||||++||
T Consensus       206 ~ik~al~~~~GPV~v~i~~~~~~~f~~Y~~GVy~~--~~c~~~~~-~HaV~iVGyg~~~-----g~~yWivkNSWG~~WG  277 (312)
T 1xkg_A          206 KIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQ--RDNGYQPN-YHAVNIVGYSNAQ-----GVDYWIVRNSWDTNWG  277 (312)
T ss_dssp             HHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCBC--CCCSSCCE-EEEEEEEEEEEET-----TEEEEEEECSBCTTST
T ss_pred             HHHHHHHhcCCCEEEEEEecccccccccCCcEEcC--CCCCCCcC-ceEEEEEEEeccC-----CceEEEEEeCCCCccc
Confidence            99999999 99999999995   688999999973  3465 446 9999999999875     7789999999999999


Q ss_pred             CCCCC
Q psy11694        651 EKVML  655 (655)
Q Consensus       651 e~Gy~  655 (655)
                      ++|||
T Consensus       278 e~GY~  282 (312)
T 1xkg_A          278 DNGYG  282 (312)
T ss_dssp             BTTEE
T ss_pred             CCcEE
Confidence            99997

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1

Probab=99.97  E-value=2.6e-32  Score=285.28  Aligned_cols=146  Identities=35%  Similarity=0.669  Sum_probs=127.7

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHH
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEE  576 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  576 (655)
                      .+++||+|+|++|+..+.||+||++..|++|+.++ |+++|++|||.....  .|.........+++.+|..++..+++.
T Consensus       150 ~~~~lSeq~lvdC~~~~~gC~GG~~~~a~~yi~~~-Gi~~e~~yPY~~~~~--~C~~~~~~~~~~~i~~~~~v~~~~e~~  226 (322)
T 1pci_A          150 KLVELSEQELVDCERRSHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQG--TCRAKQVGGPIVKTSGVGRVQPNNEGN  226 (322)
T ss_dssp             CCCCBCHHHHHHSCTTSCGGGCBCHHHHHHHHHHH-CBCBTTTSCCCSSCC--CCTTTTCCSCCBCCCCEEECCSSBHHH
T ss_pred             CccccCHHHHHhhcCCCCCCCCCCHHHHHHHHHHh-CCCchhhCCCCCCCC--CCCCCCCCCceEEEeeEEEeCCCcHHH
Confidence            46889999999998777899999999999999997 899999999998876  787654233456889999998888999


Q ss_pred             HHHHHHhCCCEEEEEEcc--ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCCC
Q psy11694        577 MKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVM  654 (655)
Q Consensus       577 ik~~i~~~GPV~~~~~~~--~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy  654 (655)
                      ||++|+. |||+++|++.  +|+.|++|||.   ..|+.. .+|||+|||||+++     |.+|||||||||++|||+||
T Consensus       227 l~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~---~~c~~~-~~HaV~iVGyg~~~-----g~~yWivkNSWG~~WGe~GY  296 (322)
T 1pci_A          227 LLNAIAK-QPVSVVVESKGRPFQLYKGGIFE---GPCGTK-VDGAVTAVGYGKSG-----GKGYILIKNSWGTAWGEKGY  296 (322)
T ss_dssp             HHHHHHH-SCEEEEECTTCHHHHTEEEEEEC---CSCCSC-CCEEEEEEEEEEET-----TEEEEEEECSBCSSSTBTTE
T ss_pred             HHHHHHH-CCEEEEEecccccccccCCeEeC---CCCCCC-CCEEEEEEEEeccC-----CccEEEEEeCCCCcccCCeE
Confidence            9999986 9999999994  68899999997   356654 69999999999886     67899999999999999999


Q ss_pred             C
Q psy11694        655 L  655 (655)
Q Consensus       655 ~  655 (655)
                      |
T Consensus       297 ~  297 (322)
T 1pci_A          297 I  297 (322)
T ss_dssp             E
T ss_pred             E
Confidence            7

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0

Probab=99.97  E-value=4.3e-32  Score=270.05  Aligned_cols=147  Identities=32%  Similarity=0.757  Sum_probs=121.3

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHH
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEE  576 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  576 (655)
                      .+++||+|+|++|...+.||.||++..|++|+.++.|+++|++|||.....  .|......  .+++.+|..++ .++++
T Consensus        44 ~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~--~C~~~~~~--~~~i~~~~~v~-~~~~~  118 (222)
T 3u8e_A           44 RLISVSEQQIVDCDTXXXXXXGGDADDAFRWVITNGGIASDANYPYTGVDG--TCDLNKPI--AARIDGYTNVP-NSSSA  118 (222)
T ss_dssp             CCCCBCHHHHHHHCC------CCCHHHHHHHHHHHTCBCBTTTSCCCSSCC--CCCCCSCC--CBCCCEEEECC-SCHHH
T ss_pred             CCcccCHHHHHhccCcccccCCCCHHHHHHHHHHcCCccchhcCCCcccCC--ccccCCCC--eEEEccEEEeC-CcHHH
Confidence            468999999999987788999999999999999977999999999998776  68765533  67889999998 78999


Q ss_pred             HHHHHHhCCCEEEEEEcc--ccccccC-CeeecCCCCCCC--cccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCC
Q psy11694        577 MKKWVATRGPLSVGMNAN--GLFYYSG-GVIDLNQRLCNP--KAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGE  651 (655)
Q Consensus       577 ik~~i~~~GPV~~~~~~~--~~~~y~~-Gi~~~~~~~~~~--~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe  651 (655)
                      ||++| .+|||+++|++.  +|+.|++ |||..  ..|+.  ..++|||+|||||++..    +.+|||||||||++|||
T Consensus       119 i~~~l-~~GPV~v~i~~~~~~f~~Y~~~Giy~~--~~~~~~~~~~~HaV~iVGyg~~~~----g~~yWivkNSWG~~WGe  191 (222)
T 3u8e_A          119 LLDAV-AKQPVSVNIYTSSTSFQLYTGPGIFAG--SSCSDDPATVDHTVLIVGYGSNGT----NADYWIVKNSWGTEWGI  191 (222)
T ss_dssp             HHHHH-HHSCEEEEECCCSHHHHTCCCSSCBCC--TTCCCCGGGCCEEEEEEEEEESST----TCEEEEEECSBCTTSTB
T ss_pred             HHHHH-hCCCEEEEEEecChhhhcEeCCceECC--CcccCCCCcCCEEEEEEEEeecCC----CCcEEEEECCCCCCccc
Confidence            99999 569999999994  5889999 99973  24543  46799999999998752    56899999999999999


Q ss_pred             CCCC
Q psy11694        652 KVML  655 (655)
Q Consensus       652 ~Gy~  655 (655)
                      +|||
T Consensus       192 ~Gy~  195 (222)
T 3u8e_A          192 DGYI  195 (222)
T ss_dssp             TTEE
T ss_pred             CCEE
Confidence            9997

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*

Probab=99.97  E-value=2.3e-32  Score=285.27  Aligned_cols=152  Identities=39%  Similarity=0.769  Sum_probs=128.3

Q ss_pred             cccccccccccCCCC--CCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCH
Q psy11694        497 KLSRLATEKLVDCDM--SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEE  574 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~--~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~  574 (655)
                      ++++||+|+|++|+.  .+.||.||++..|++|+.++.|+++|++|||.....  .|.... .....++.+|..++. ++
T Consensus       140 ~~~~LSeq~lvdC~~~~g~~gC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~--~C~~~~-~~~~~~i~~~~~v~~-~~  215 (316)
T 1cs8_A          140 RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE--SCKYNP-KYSVANDAGFVDIPK-QE  215 (316)
T ss_dssp             CCCCBCHHHHHHHCGGGTCCGGGCBCHHHHHHHHHHHTCEEBTTTSCCCSSCC--CCCCCG-GGEEECCCCEEECCS-CH
T ss_pred             CCcCcCHHHHHHhccccCCCCCCCCCHHHHHHHHHHhCCcCchhccCCCCCCC--CcCCCC-ccceeEeccEEEeCC-CH
Confidence            468999999999975  368999999999999998667999999999998876  787654 334678899999987 89


Q ss_pred             HHHHHHHHhCCCEEEEEEcc--ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCC
Q psy11694        575 EEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK  652 (655)
Q Consensus       575 ~~ik~~i~~~GPV~~~~~~~--~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~  652 (655)
                      ++||++|+++|||+++|++.  +|+.|++|||..  ..|+...++|||+|||||++... ..+.+|||||||||++|||+
T Consensus       216 ~~ik~~l~~~GPV~v~i~~~~~~f~~Y~~Gvy~~--~~c~~~~~~HaV~iVGygd~~~~-~~g~~yWivkNSWG~~WGe~  292 (316)
T 1cs8_A          216 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFE--PDCSSEDMDHGVLVVGYGFESTE-SDNNKYWLVKNSWGEEWGMG  292 (316)
T ss_dssp             HHHHHHHHHHCCEEEEECCCSHHHHTEEEEEECC--TTCCSSCCCEEEEEEEEEEECCS-SCCEEEEEEECSBCTTSTBT
T ss_pred             HHHHHHHHhcCCEEEEEecCChhhccccCceECC--CCCCCCCCCEEEEEEEecCCccc-CCCCcEEEEEcCCCCCcccC
Confidence            99999999999999999995  588999999972  33666678999999999932111 02678999999999999999


Q ss_pred             CCC
Q psy11694        653 VML  655 (655)
Q Consensus       653 Gy~  655 (655)
                      |||
T Consensus       293 GY~  295 (316)
T 1cs8_A          293 GYV  295 (316)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            997

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ...

Probab=99.97  E-value=8.4e-32  Score=265.96  Aligned_cols=142  Identities=32%  Similarity=0.616  Sum_probs=123.8

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHH
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEE  576 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  576 (655)
                      .+++||+|+|++|...+.||.||++..|++|++++ |+++|++|||.....  .|.........+++.+|..++..+++.
T Consensus        44 ~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~yi~~~-Gi~~e~~yPY~~~~~--~C~~~~~~~~~~~i~~~~~v~~~~~~~  120 (212)
T 2cio_A           44 NLNQYSEQELLDCDRRSYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQR--YCRSREKGPYAAKTDGVRQVQPYNEGA  120 (212)
T ss_dssp             CCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHT-CBCBTTTSCCCSSCC--CCCTTTTCSCSBCCSEEEECCSSCHHH
T ss_pred             CccccCHHHHHHhCCCCCCCCCCCHHHHHHHHHHh-CcCcccccCCcCCCC--CcCCCCCCCceEEEeeEEEeCCccHHH
Confidence            46899999999998767899999999999999996 999999999998765  687654234467889999998888999


Q ss_pred             HHHHHHhCCCEEEEEEcc--ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCCC
Q psy11694        577 MKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVM  654 (655)
Q Consensus       577 ik~~i~~~GPV~~~~~~~--~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy  654 (655)
                      ||++|++ |||+++|++.  +|+.|++|||.   ..|+. .++|||+|||||+         +|||||||||++|||+||
T Consensus       121 i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~---~~~~~-~~~HaV~iVGyg~---------~yWivkNSWG~~WGe~Gy  186 (212)
T 2cio_A          121 LLYSIAN-QPVSVVLEAAGKDFQLYRGGIFV---GPCGN-KVDHAVAAVGYGP---------NYILIKNSWGTGWGENGY  186 (212)
T ss_dssp             HHHHHHH-SCEEEEECCCSHHHHTCCSSEEC---CCCCS-CCCEEEEEEEEET---------TEEEEECSBCTTSTBTTE
T ss_pred             HHHHHHh-CCEEEEEeccCcchhhcCCceec---CCCCC-CCCEEEEEEEecC---------CeEEEEeCCCCCcccCcE
Confidence            9999986 9999999994  58899999997   34654 4799999999998         399999999999999999


Q ss_pred             C
Q psy11694        655 L  655 (655)
Q Consensus       655 ~  655 (655)
                      |
T Consensus       187 ~  187 (212)
T 2cio_A          187 I  187 (212)
T ss_dssp             E
T ss_pred             E
Confidence            7

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare}

Probab=99.97  E-value=2.9e-32  Score=276.50  Aligned_cols=148  Identities=39%  Similarity=0.849  Sum_probs=127.2

Q ss_pred             cccccccccccCCCC-CCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCC--cCCc-eEEEeeeEEcCCC
Q psy11694        497 KLSRLATEKLVDCDM-SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGE--EEGF-KVKVKEYSRIPYG  572 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~-~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~--~~~~-~~~~~~~~~~~~~  572 (655)
                      ++++||+|+|++|.. .+.||.||++..|++|+.++.|+++|++|||.....  .|....  .... .+++.+|..++..
T Consensus        47 ~~~~LSeQ~lvdC~~~~~~GC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~--~C~~~~~~~~~~~~~~i~~y~~v~~~  124 (262)
T 2fo5_A           47 SLVSLSEQELIDCDTADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARG--TCNVARAAQNSPVVVHIDGHQDVPAN  124 (262)
T ss_dssp             CCCCBCHHHHHHHCCSSCCGGGCBCHHHHHHHHHHTTCEEBTTTSCCCSSCC--CCCHHHHHHHCCCEECCCEEEECCTT
T ss_pred             CCCCcCHHHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCcCchhcCCCcCccC--ccCCcccccCCceeEEeceEEEcCCc
Confidence            468999999999986 578999999999999999977999999999998766  687532  1233 6788999999888


Q ss_pred             CHHHHHHHHHhCCCEEEEEEcc--ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcC
Q psy11694        573 EEEEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWG  650 (655)
Q Consensus       573 ~~~~ik~~i~~~GPV~~~~~~~--~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WG  650 (655)
                      +++.||++|++ |||+++|++.  +|+.|++|||.   ..|+.. .+|||+|||||++.+    +.+|||||||||++||
T Consensus       125 ~e~~ik~al~~-GPV~v~i~~~~~~f~~Y~sGVy~---~~c~~~-~~HaV~IVGyg~~~~----G~~YWivkNSWG~~WG  195 (262)
T 2fo5_A          125 SEEDLARAVAN-QPVSVAVEASGKAFMFYSEGVFT---GECGTE-LDHGVAVVGYGVAED----GKAYWTVKNSWGPSWG  195 (262)
T ss_dssp             CHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEEC---CCCCCC-CCEEEEEEEEEECTT----SCEEEEEECSBCTTST
T ss_pred             hHHHHHHHHHh-CCEEEEEecChHHHhccCCceEC---CCCCCc-CCEEEEEEEEcccCC----CceEEEEEeCCCCCCC
Confidence            89999999987 8999999995  68899999997   356553 699999999998741    6789999999999999


Q ss_pred             CCCCC
Q psy11694        651 EKVML  655 (655)
Q Consensus       651 e~Gy~  655 (655)
                      |+|||
T Consensus       196 e~GY~  200 (262)
T 2fo5_A          196 EQGYI  200 (262)
T ss_dssp             BTTEE
T ss_pred             CCeEE
Confidence            99997

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana}

Probab=99.97  E-value=9e-32  Score=265.99  Aligned_cols=142  Identities=36%  Similarity=0.815  Sum_probs=124.9

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHH
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEE  576 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  576 (655)
                      .+++||+|+|++|...+.||.||++..|++|++++ |+++|++|||.....  .|.........+++.+|..++..++++
T Consensus        44 ~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~y~~~~-Gi~~e~~yPY~~~~~--~C~~~~~~~~~~~i~~y~~v~~~~~~~  120 (214)
T 2bdz_A           44 QLISLSEQELLDCERRSHGCDGGYQTTSLQYVVDN-GVHTEREYPYEKKQG--RCRAKDKKGPKVYITGYKYVPANDEIS  120 (214)
T ss_dssp             CBCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHH-CEEBTTTSCCCSSCC--CCCTTTCCSCEECCCEEEEECSSBHHH
T ss_pred             CccccCHHHHHhhcCCCCCCCCCCHHHHHHHHHHh-CCCccccCCCCCCCC--CCCCCCCCCceeeecCEEEeCCCcHHH
Confidence            46899999999998767899999999999999998 999999999998766  687654334567899999998889999


Q ss_pred             HHHHHHhCCCEEEEEEcc--ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCCC
Q psy11694        577 MKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVM  654 (655)
Q Consensus       577 ik~~i~~~GPV~~~~~~~--~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy  654 (655)
                      ||++|++ |||+++|++.  +|+.|++|||.   ..|+. .++|||+|||||+         +|||||||||++|||+||
T Consensus       121 i~~~l~~-gPV~v~i~~~~~~f~~Y~~Giy~---~~~~~-~~~HaV~iVGyg~---------~yWivkNSWG~~WGe~Gy  186 (214)
T 2bdz_A          121 LIQAIAN-QPVSVVTDSRGRGFQFYKGGIYE---GPCGT-NTDHAVTAVGYGK---------TYLLLKNSWGPNWGEKGY  186 (214)
T ss_dssp             HHHHHHH-SCEEEEECCCSHHHHTCCSSEEC---CSCCS-CCCEEEEEEEECS---------SEEEEECSBCTTSTBTTE
T ss_pred             HHHHHHh-CCEEEEEeeChhHhhcccCceec---CCCCC-CCCeEEEEEEcCC---------CeEEEEeCCCCCcccCCE
Confidence            9999987 9999999996  57899999997   34654 4799999999998         399999999999999999


Q ss_pred             C
Q psy11694        655 L  655 (655)
Q Consensus       655 ~  655 (655)
                      |
T Consensus       187 ~  187 (214)
T 2bdz_A          187 I  187 (214)
T ss_dssp             E
T ss_pred             E
Confidence            7

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A

Probab=99.97  E-value=3.3e-32  Score=274.10  Aligned_cols=149  Identities=36%  Similarity=0.786  Sum_probs=126.9

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCC-CCCCCcCCceEEEeeeEEcCCCCHH
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERG-CLVGEEEGFKVKVKEYSRIPYGEEE  575 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~-c~~~~~~~~~~~~~~~~~~~~~~~~  575 (655)
                      .+++||+|+|++|...+.||.||++..|++|+.++.|+++|++|||.....  . |.... ....+++.+|..++..+++
T Consensus        61 ~~~~lSeq~l~dC~~~~~gC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~--~~C~~~~-~~~~~~i~~~~~v~~~~~~  137 (241)
T 2oul_A           61 KLITLSEQELVDCSFKNYGCNGGLINNAFEDMIELGGICPDGDYPYVSDAP--NLCNIDR-CTEKYGIKNYLSVPDNKLK  137 (241)
T ss_dssp             CCCCBCHHHHHHHCTTSCTTBCBCHHHHHHHHHHTTSBCBTTSSCCCTTSC--CCCCTTS-SSCCBCCSEEEECCTTCHH
T ss_pred             CCcccCHHHHHhhcCCCCCCCCCCHHHHHHHHHHhCCcCccccCCCcCCCC--CcCCCCC-CccceeeeeEEEeCCCCHH
Confidence            467999999999987678999999999999999866999999999998765  5 87643 3446789999999888999


Q ss_pred             HHHHHHHhCCCEEEEEEcc-ccccccCCeeecCCCCCCCcccCeEEEEEEEecccC-----CCCCCCCEEEEEcCCCCCc
Q psy11694        576 EMKKWVATRGPLSVGMNAN-GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEK-----KDGTSIPYWIVKNSWGSDW  649 (655)
Q Consensus       576 ~ik~~i~~~GPV~~~~~~~-~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~-----~~~~~~~ywivrNSWG~~W  649 (655)
                      +||++|   |||+++|++. +|+.|++|||.   ..|+.. ++|||+|||||++..     ..+++.+|||||||||++|
T Consensus       138 ~ik~~l---GPV~v~i~~~~~f~~Y~~Giy~---~~c~~~-~~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkNSWG~~W  210 (241)
T 2oul_A          138 EALRFL---GPISISVAVSDDFAFYKEGIFD---GECGDQ-LNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQW  210 (241)
T ss_dssp             HHHHHT---CCEEEEECBCHHHHTCCSSBCC---SCBCSS-CCEEEEEEEEEEEEEECTTTCSEEEEEEEEEECSBCTTS
T ss_pred             HHHHhh---CCEEEEEecCcchhhcCCcEEc---CcCCCC-CCEEEEEEEeccccccccccccCCCCCEEEEEeCCCCCc
Confidence            999999   9999999995 68899999997   356655 899999999998741     1123678999999999999


Q ss_pred             CCCCCC
Q psy11694        650 GEKVML  655 (655)
Q Consensus       650 Ge~Gy~  655 (655)
                      ||+|||
T Consensus       211 Ge~Gy~  216 (241)
T 2oul_A          211 GERGFI  216 (241)
T ss_dssp             TBTTEE
T ss_pred             ccCCEE
Confidence            999997

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1

Probab=99.97  E-value=4.8e-32  Score=270.77  Aligned_cols=148  Identities=41%  Similarity=0.808  Sum_probs=126.6

Q ss_pred             cccccccccccCCCC-CCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHH
Q psy11694        497 KLSRLATEKLVDCDM-SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEE  575 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~-~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~  575 (655)
                      .+++||+|+|++|.. .+.||.||++..|++|+.++.|+++|++|||.....  .|.........+++.+|..++..+++
T Consensus        45 ~~~~lS~q~l~dC~~~~~~gC~GG~~~~a~~y~~~~~Gi~~e~~yPY~~~~~--~C~~~~~~~~~~~i~~y~~v~~~~~~  122 (229)
T 1s4v_A           45 KLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDG--TCDVSKENAPAVSIDGHENVPENDEN  122 (229)
T ss_dssp             CCCCBCHHHHHHHCCSSCCTTBCBCHHHHHHHHHHHTCBCBTTTSCCCSSCC--CCCHHHHTCCCBCCCEEEECCTTCHH
T ss_pred             CCCCcCHHHHHhhCCCCCCCCCCCCHHHHHHHHHHhCCccccccCCccCCCC--CCCCCCCCCcEEEeeeEEEeCCccHH
Confidence            468999999999986 578999999999999999977999999999998766  68654223345788999999888899


Q ss_pred             HHHHHHHhCCCEEEEEEc-c-ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCC
Q psy11694        576 EMKKWVATRGPLSVGMNA-N-GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKV  653 (655)
Q Consensus       576 ~ik~~i~~~GPV~~~~~~-~-~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~G  653 (655)
                      .||++|++ |||+++|++ . +|+.|++|||.   ..|+. ..+|||+|||||++..    +.+|||||||||++|||+|
T Consensus       123 ~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~---~~c~~-~~~HaV~iVGyg~~~~----g~~yWivkNSWG~~WGe~G  193 (229)
T 1s4v_A          123 ALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFT---GSCGT-ELDHGVAIVGYGTTID----GTKYWTVKNSWGPEWGEKG  193 (229)
T ss_dssp             HHHHHHHH-SCEEEEECCCSHHHHTCCSSEEC---CCCCC-CCCEEEEEEEEEECTT----SCEEEEEECSBCTTSTBTT
T ss_pred             HHHHHHhc-CCEEEEEEeCcHHHhhCCCcEEC---CCCCC-CCCeEEEEEEeccccC----CCCEEEEEeCCCCCccCCc
Confidence            99999986 999999999 3 58899999997   34654 3699999999998752    6789999999999999999


Q ss_pred             CC
Q psy11694        654 ML  655 (655)
Q Consensus       654 y~  655 (655)
                      ||
T Consensus       194 y~  195 (229)
T 1s4v_A          194 YI  195 (229)
T ss_dssp             EE
T ss_pred             EE
Confidence            97

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*

Probab=99.97  E-value=1.3e-31  Score=263.61  Aligned_cols=140  Identities=41%  Similarity=0.803  Sum_probs=122.9

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHH
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEE  576 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  576 (655)
                      ++++||+|+|++|...+.||+||++..|++|+.++.|+++|++|||.....  .|+.   ....+++.+|..++..+++.
T Consensus        44 ~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~y~~~~~Gi~~e~~yPY~~~~~--~C~~---~~~~~~i~~~~~v~~~~~~~  118 (208)
T 1o0e_A           44 NLISLSEQELVDCDKKNHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQG--PCQA---ASKVVSIDGYNGVPFCNEXA  118 (208)
T ss_dssp             CCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHHTCBCBTTTSCCCSSCC--CCCC---CCCCBCCCEEEECCTTCHHH
T ss_pred             CceecCHHHhhhhcCCCCCCCCCCHHHHHHHHHHhCCcCcccccCccCCCC--cCCC---CCceEEeCeEEEeCCCCHHH
Confidence            468999999999987778999999999999999977999999999998766  6875   23456788999998888999


Q ss_pred             HHHHHHhCCCEEEEEEcc--ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCCC
Q psy11694        577 MKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVM  654 (655)
Q Consensus       577 ik~~i~~~GPV~~~~~~~--~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy  654 (655)
                      ||++|++ |||+++|++.  +|+.|++|||.   ..|+. ..+|||+|||||+         +|||||||||++|||+||
T Consensus       119 i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~---~~c~~-~~~HaV~iVGyg~---------~yWivkNSWG~~WGe~Gy  184 (208)
T 1o0e_A          119 LKQAVAV-QPSTVAIDASSAQFQQYSSGIFS---GPCGT-KLNHGVTIVGYQA---------NYWIVRNSWGRYWGEKGY  184 (208)
T ss_dssp             HHHHHHH-SCEEEEECCCSHHHHTCCSSEEC---CCCCS-CCCEEEEEEEECS---------SEEEEECSBCTTSTBTTE
T ss_pred             HHHHHHh-CCEEEEEEccCcccccccCceEC---CCCCC-cCCEEEEEEEeCC---------CeEEEEcCCCCcccCCcE
Confidence            9999986 9999999994  58899999997   34654 4699999999998         399999999999999999


Q ss_pred             C
Q psy11694        655 L  655 (655)
Q Consensus       655 ~  655 (655)
                      |
T Consensus       185 ~  185 (208)
T 1o0e_A          185 I  185 (208)
T ss_dssp             E
T ss_pred             E
Confidence            7

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A*

Probab=99.97  E-value=4.2e-32  Score=273.68  Aligned_cols=149  Identities=36%  Similarity=0.747  Sum_probs=126.7

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCC-CCCCCcCCceEEEeeeEEcCCCCHH
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERG-CLVGEEEGFKVKVKEYSRIPYGEEE  575 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~-c~~~~~~~~~~~~~~~~~~~~~~~~  575 (655)
                      .+++||+|+|++|...+.||.||++..|++|+.++.|+++|++|||.....  . |.... ....+++.+|..++..+++
T Consensus        63 ~~~~lSeq~lvdC~~~~~gC~GG~~~~a~~y~~~~~Gi~~e~~yPY~~~~~--~~C~~~~-~~~~~~i~~~~~v~~~~~~  139 (243)
T 3bwk_A           63 ALFLFSEQELVDCSVKNNGCYGGYITNAFDDMIDLGGLCSQDDYPYVSNLP--ETCNLKR-CNERYTIKSYVSIPDDKFK  139 (243)
T ss_dssp             SCCCBCHHHHHHHCTTSCGGGCCCHHHHHHHHHHTTSBCBTTTSCCCTTSC--CCCCGGG-CSSCBCCCEEEECCTTCHH
T ss_pred             CCcccCHHHHHHhcCCCCCCCCCCHHHHHHHHHHhCCcccccccCCcCCCC--CcCCCCC-CccceeeeeEEEeCCCCHH
Confidence            467999999999987678999999999999999866999999999998765  5 87543 3345788999999888999


Q ss_pred             HHHHHHHhCCCEEEEEEcc-ccccccCCeeecCCCCCCCcccCeEEEEEEEecccC-----CCCCCCCEEEEEcCCCCCc
Q psy11694        576 EMKKWVATRGPLSVGMNAN-GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEK-----KDGTSIPYWIVKNSWGSDW  649 (655)
Q Consensus       576 ~ik~~i~~~GPV~~~~~~~-~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~-----~~~~~~~ywivrNSWG~~W  649 (655)
                      +||++|   |||+++|++. +|+.|++|||.   ..|+.. ++|||+|||||++..     ..+++.+|||||||||++|
T Consensus       140 ~ik~~l---GPV~v~i~~~~~f~~Y~~Giy~---~~c~~~-~~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkNSWG~~W  212 (243)
T 3bwk_A          140 EALRYL---GPISISIAASDDFAFYRGGFYD---GECGAA-PNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDW  212 (243)
T ss_dssp             HHHHHT---CCEEEEECCCHHHHTCCSSSCC---CCCCSS-CCEEEEEEEEEEEEEECTTTCSEEEEEEEEEECSBCTTS
T ss_pred             HHHHhh---CCEEEEEecChhHHhcCCceec---CCCCCc-CCeEEEEEEecCccccccccccCCCCCEEEEEeCCCCCc
Confidence            999999   9999999995 68899999997   356655 899999999998741     1123678999999999999


Q ss_pred             CCCCCC
Q psy11694        650 GEKVML  655 (655)
Q Consensus       650 Ge~Gy~  655 (655)
                      ||+|||
T Consensus       213 Ge~Gy~  218 (243)
T 3bwk_A          213 GEGGYI  218 (243)
T ss_dssp             TBTTEE
T ss_pred             CCCcEE
Confidence            999997

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*

Probab=99.97  E-value=8.2e-32  Score=281.63  Aligned_cols=146  Identities=27%  Similarity=0.560  Sum_probs=119.0

Q ss_pred             ccccccccccCCCC-CCCCCCCCCccchHHHHHHcCCCCCCCCcccC-CC-----C---CCCCCC----------CCC--
Q psy11694        498 LSRLATEKLVDCDM-SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYK-AS-----E---SERGCL----------VGE--  555 (655)
Q Consensus       498 ~~~ls~q~l~~C~~-~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~-~~-----~---~~~~c~----------~~~--  555 (655)
                      +++||+|+|++|+. .+.||+||++..|++|++++ |+++|++|||. ..     .   ...+|.          ..+  
T Consensus       121 ~~~LSeQ~LvdC~~~~~~GC~GG~~~~A~~yi~~~-Gi~~e~~yPY~~~~c~~~~~~~~~~~~C~~~~~~~~~c~~~c~~  199 (325)
T 3hhi_A          121 DVHISAGDLLACCSDCGDGCNGGDPDRAWAYFSST-GLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDD  199 (325)
T ss_dssp             SCCBCHHHHHHHCGGGBCTTBCBCHHHHHHHHHHT-CBCBTTTSCCSSCCCBSSSCCTTCCCBGGGCCCCCCCCCSSCSS
T ss_pred             ccccCHHHHHHhccCCCCCCCCCCHHHHHHHHHHh-CCCcccccCCccccccccccccccCCCCCCcccCCcchhhcccc
Confidence            67999999999976 46899999999999999997 99999999998 32     0   001343          110  


Q ss_pred             ---cCCceEEEeeeEEcCCCCHHHHHHHHHhCCCEEEEEEc-cccccccCCeeecCCCCCCCcccCeEEEEEEEecccCC
Q psy11694        556 ---EEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNA-NGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKK  631 (655)
Q Consensus       556 ---~~~~~~~~~~~~~~~~~~~~~ik~~i~~~GPV~~~~~~-~~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~  631 (655)
                         .......+..|. +  .++++||++|+++|||+++|++ .+|+.|++|||.   ..++...++|||+|||||+++  
T Consensus       200 ~~~~~~~~~~~~~y~-v--~~~~~i~~~i~~~GPV~v~i~~~~~f~~Y~~GVy~---~~~~~~~~~HaV~iVGyG~~~--  271 (325)
T 3hhi_A          200 PTIPVVNYRSWTSYA-L--QGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYH---HVSGQYLGGHAVRLVGWGTSN--  271 (325)
T ss_dssp             TTSCCCCBCEEEEEE-E--CSHHHHHHHHHHHCCEEEEEEEEHHHHTCCSSEEC---CCSCCEEEEEEEEEEEEEEET--
T ss_pred             cccccceEEeecceE-e--CCHHHHHHHHHHCCCEEEEEEeccccccccCceec---CCCCCCCCCEEEEEEEEEecC--
Confidence               012233567776 4  6899999999999999999999 578899999997   445556679999999999876  


Q ss_pred             CCCCCCEEEEEcCCCCCcCCCCCC
Q psy11694        632 DGTSIPYWIVKNSWGSDWGEKVML  655 (655)
Q Consensus       632 ~~~~~~ywivrNSWG~~WGe~Gy~  655 (655)
                         +.+|||||||||++|||+|||
T Consensus       272 ---g~~YWivkNSWG~~WGe~GY~  292 (325)
T 3hhi_A          272 ---GVPYWKIANSWNTEWGMDGYF  292 (325)
T ss_dssp             ---TEEEEEEECSBCTTSTBTTEE
T ss_pred             ---CceEEEEEeCCCCCcccCCEE
Confidence               778999999999999999997

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0

Probab=99.97  E-value=1.1e-31  Score=267.80  Aligned_cols=148  Identities=36%  Similarity=0.815  Sum_probs=126.7

Q ss_pred             cccccccccccCCCCC--CCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCH
Q psy11694        497 KLSRLATEKLVDCDMS--NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEE  574 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~--~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~  574 (655)
                      ++++||+|+|++|...  +.||+||++..|++|+.++.|+++|++|||.....  .|.... .....++..|..++..++
T Consensus        50 ~~~~lS~q~l~~c~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~--~C~~~~-~~~~~~i~~~~~~~~~~~  126 (224)
T 3f75_A           50 KLVSLSEQELMDCSRAEGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDE--ECRAQS-CEKVVKILGFKDVPRRSE  126 (224)
T ss_dssp             CCCCBCHHHHHHHCGGGTCCGGGCBCHHHHHHHHHHHTCBCBTTTSCCCSSCC--CCCGGG-SCCCBCCSEEEECCSSCH
T ss_pred             CCceeCHHHHhhcccCCCCCCCCCCCHHHHHHHHHHhCCccccccCCCcCCCC--CCCcCC-CCceEEeccEEEeCCChH
Confidence            4688999999999864  78999999999999999866999999999998776  687544 333456889999988899


Q ss_pred             HHHHHHHHhCCCEEEEEEcc--ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCC
Q psy11694        575 EEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK  652 (655)
Q Consensus       575 ~~ik~~i~~~GPV~~~~~~~--~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~  652 (655)
                      +.||++|+ +|||+++|++.  +|+.|++|||.   ..|+ ..++|||+|||||++.   ..+.+|||||||||++|||+
T Consensus       127 ~~l~~~l~-~gPV~v~i~~~~~~f~~y~~Giy~---~~~~-~~~~Hav~iVGyg~~~---~~g~~ywivkNSWG~~WG~~  198 (224)
T 3f75_A          127 AAMKAALA-KSPVSIAIEADQMPFQFYHEGVFD---ASCG-TDLDHGVLLVGYGTDK---ESKKDFWIMKNSWGTGWGRD  198 (224)
T ss_dssp             HHHHHHHH-HSCEEEEECCCSHHHHTEEEEEEC---CCCC-CCCCEEEEEEEEEEET---TTTEEEEEEECSBCTTSTBT
T ss_pred             HHHHHHHc-CCCEEEEEeccchhhhcCccceEC---CCCC-CccCeEEEEEEEeccc---CCCCCEEEEECCcCcchhhC
Confidence            99999998 89999999995  58899999996   3453 5689999999999873   11678999999999999999


Q ss_pred             CCC
Q psy11694        653 VML  655 (655)
Q Consensus       653 Gy~  655 (655)
                      |||
T Consensus       199 Gy~  201 (224)
T 3f75_A          199 GYM  201 (224)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            997

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1

Probab=99.97  E-value=5.5e-31  Score=260.41  Aligned_cols=142  Identities=34%  Similarity=0.699  Sum_probs=121.7

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHH
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEE  576 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  576 (655)
                      .+++||+|+|++|...+.||+||++..|++|++++ |+++|++|||.....  .|.........+++.+|..++..+++.
T Consensus        44 ~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~-Gi~~e~~yPY~~~~~--~C~~~~~~~~~~~i~~~~~v~~~~~~~  120 (213)
T 3ioq_A           44 QLLSLSEQELLDCERRSYGCRGGFPLYALQYVANS-GIHLRQYYPYEGVQR--QCRASQAKGPKVKTDGVGRVPRNNEQA  120 (213)
T ss_dssp             CCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHH-CEEBGGGSCCCSSCC--CCCGGGCCSCEECCCEEEECCSSCHHH
T ss_pred             CCcccCHHHhhhhcCCCCCCCCCCHHHHHHHHHHc-CCCchhccCcCCCCC--CCCCCccCCceEEeccEEEeCCchHHH
Confidence            46899999999998878899999999999999998 999999999998766  687644345677899999998767666


Q ss_pred             HHHHHHhCCCEEEEEEcc--ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCCC
Q psy11694        577 MKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVM  654 (655)
Q Consensus       577 ik~~i~~~GPV~~~~~~~--~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy  654 (655)
                      +++++ .+|||+++|++.  +|+.|++|||.   ..|+ ..++|||+|||||+         +|||||||||++|||+||
T Consensus       121 ~~~~~-~~GPV~v~i~~~~~~f~~y~~Giy~---~~~~-~~~~HaV~iVGyg~---------~yWivkNSWG~~WGe~Gy  186 (213)
T 3ioq_A          121 LIQRI-AIQPVSIVVEAKGRAFQNYRGGIFA---GPCG-TSIDHAVAAVGYGN---------DYILIKNSWGTGWGEGGY  186 (213)
T ss_dssp             HHHHH-TTSCEEEEECCCSHHHHTCCSSEEC---CSCC-SCCCEEEEEEEEET---------TEEEEECSBCTTSTBTTE
T ss_pred             HHHHH-HhCCEEEEEEechhhhhhccCCeEc---CCCC-CccCceEEEEecCC---------CeEEEECCCCCCcccCCe
Confidence            66655 579999999995  58899999997   3444 45799999999996         499999999999999999


Q ss_pred             C
Q psy11694        655 L  655 (655)
Q Consensus       655 ~  655 (655)
                      |
T Consensus       187 ~  187 (213)
T 3ioq_A          187 I  187 (213)
T ss_dssp             E
T ss_pred             E
Confidence            7

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A

Probab=99.97  E-value=3e-31  Score=272.05  Aligned_cols=144  Identities=28%  Similarity=0.602  Sum_probs=120.5

Q ss_pred             ccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCC-C-------------CcCCceEEE
Q psy11694        498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLV-G-------------EEEGFKVKV  563 (655)
Q Consensus       498 ~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~-~-------------~~~~~~~~~  563 (655)
                      +++||+|+|++|... .||.||++..|++|+.++ |+++|++|||...+.  .|.. .             ......+++
T Consensus        89 ~~~LS~Q~lvdC~~~-~gC~GG~~~~a~~yi~~~-Gi~~e~~yPY~~~~~--~C~~~~~~~~~~~~~~c~~~~~~~~~~i  164 (277)
T 1deu_A           89 STLLSVQNVIDCGNA-GSCEGGNDLSVWDYAHQH-GIPDETCNNYQAKDQ--ECDKFNQCGTCNEFKECHAIRNYTLWRV  164 (277)
T ss_dssp             CCCBCHHHHHHHSSS-EETBEECHHHHHHHHHHT-CBCBGGGSCCCSSCC--CCCHHHHSEEEEETTEEEECSSCCCBCE
T ss_pred             CcccCHHHHHhCcCC-CCCCCCCHHHHHHHHHHc-CCCcCccCCCcCCCC--CccccccccccccCcccccccCcceEEe
Confidence            578999999999753 799999999999999985 999999999998765  4552 0             001134577


Q ss_pred             eeeEEcCCCCHHHHHHHHHhCCCEEEEEEcc-ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEE
Q psy11694        564 KEYSRIPYGEEEEMKKWVATRGPLSVGMNAN-GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVK  642 (655)
Q Consensus       564 ~~~~~~~~~~~~~ik~~i~~~GPV~~~~~~~-~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivr  642 (655)
                      ..|..++  ++++||++|+++|||+++|++. +|+.|++|||..   .+....++|||+|||||+++     +.+|||||
T Consensus       165 ~~y~~v~--~~~~i~~~i~~~GPV~v~i~~~~~f~~Y~~GIy~~---~~~~~~~~HaV~iVGyg~~~-----g~~YWivk  234 (277)
T 1deu_A          165 GDYGSLS--GREKMMAEIYANGPISCGIMATERLANYTGGIYAE---YQDTTYINHVVSVAGWGISD-----GTEYWIVR  234 (277)
T ss_dssp             EEEEEEC--SHHHHHHHHHHHCCEEEEECCCHHHHTCCSSEECB---CCSCCCCCEEEEEEEEEEET-----TEEEEEEE
T ss_pred             ceeEecC--CHHHHHHHHHHcCCEEEEEecccccccCcCcEECC---CCCCCcCCeEEEEEEecccC-----CccEEEEE
Confidence            8888875  5889999999999999999995 688999999973   23345689999999999875     67899999


Q ss_pred             cCCCCCcCCCCCC
Q psy11694        643 NSWGSDWGEKVML  655 (655)
Q Consensus       643 NSWG~~WGe~Gy~  655 (655)
                      ||||++|||+|||
T Consensus       235 NSWG~~WGe~GY~  247 (277)
T 1deu_A          235 NSWGEPWGERGWL  247 (277)
T ss_dssp             CSBCTTSTBTTEE
T ss_pred             eCCCCccCCCcEE
Confidence            9999999999997

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ...

Probab=99.96  E-value=1e-30  Score=267.14  Aligned_cols=148  Identities=26%  Similarity=0.541  Sum_probs=116.6

Q ss_pred             cccccccccccCCCC--CCCCCCCCCccchHHHHHHcCCCCC-------CCCcccCCCC-------CCCCCC--------
Q psy11694        497 KLSRLATEKLVDCDM--SNGGCNGGRMDDALQYIIDNGGVVS-------DQAYPYKASE-------SERGCL--------  552 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~--~~~gC~GG~~~~a~~~~~~~~Gv~~-------e~~yPY~~~~-------~~~~c~--------  552 (655)
                      .+++||+|+|++|..  .+.||.||++..|++|++++ |+++       |.+|||....       ....|.        
T Consensus        56 ~~~~LS~q~lvdC~~~~~~~gC~GG~~~~a~~y~~~~-Gi~~~~~Y~~~e~~~PY~~~~~~~~~~~~~~~C~~~~~~p~c  134 (266)
T 3cbj_A           56 VSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEAHVNGARPPCTGEGDTPKC  134 (266)
T ss_dssp             CCCCBCHHHHHHHCGGGGBCTTBCBCHHHHHHHHHHT-CBCBCCSTTCCCSSSCCCSCCCSCCCSCSSCCCCSCCCCCCC
T ss_pred             CccccCHHHHHhhccccCCCCCCCCCHHHHHHHHHHh-CcCcCccccccccccCcccccccccccCCCCCCccccCCCcc
Confidence            368999999999986  47899999999999999995 9999       9999998421       011332        


Q ss_pred             -CCCcC--------CceEEEeeeEEcCCCCHHHHHHHHHhCCCEEEEEEc-cccccccCCeeecCCCCCCCcccCeEEEE
Q psy11694        553 -VGEEE--------GFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNA-NGLFYYSGGVIDLNQRLCNPKAQNHALII  622 (655)
Q Consensus       553 -~~~~~--------~~~~~~~~~~~~~~~~~~~ik~~i~~~GPV~~~~~~-~~~~~y~~Gi~~~~~~~~~~~~~~HaV~i  622 (655)
                       ..+..        ...+.+ .+..++ .++++||++|+++|||+++|++ .+|+.|++|||.   ..++...++|||+|
T Consensus       135 ~~~c~~~~~~~~~~~~~~~~-~~~~v~-~~~~~i~~~i~~~GPV~v~i~~~~~f~~Y~~Gvy~---~~~~~~~~~HaV~i  209 (266)
T 3cbj_A          135 SKICEPGYSPTYKQDKHYGY-NSYSVS-NSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQ---HVTGEMMGGHAIRI  209 (266)
T ss_dssp             CCSCCTTCCSCTGGGCBCBS-CCEECC-SCHHHHHHHHHHHCCEEEEEEEEGGGGGCCSSEEC---CCSSCEEEEEEEEE
T ss_pred             ccccCCCCcceeeeeeeeee-eeEEeC-CCHHHHHHHHHhcCCEEEEEEeccchhhcCCeEEe---cCCCCccCCeEEEE
Confidence             11100        011122 233454 5899999999999999999999 578899999997   34555667999999


Q ss_pred             EEEecccCCCCCCCCEEEEEcCCCCCcCCCCCC
Q psy11694        623 VGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVML  655 (655)
Q Consensus       623 VGyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy~  655 (655)
                      ||||+++     +.+|||||||||++|||+|||
T Consensus       210 VGyg~~~-----g~~yWivkNSWG~~WGe~Gy~  237 (266)
T 3cbj_A          210 LGWGVEN-----GTPYWLVANSWNTDWGDNGFF  237 (266)
T ss_dssp             EEEEEET-----TEEEEEEECSBCTTSTBTTEE
T ss_pred             EEecccC-----CceEEEEEcCCCCccCCCCEE
Confidence            9999875     678999999999999999997

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*

Probab=99.96  E-value=1.7e-30  Score=280.72  Aligned_cols=150  Identities=31%  Similarity=0.636  Sum_probs=123.6

Q ss_pred             cccccccccCCCCCCCCCCCCCccch-HHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcC----CCC
Q psy11694        499 SRLATEKLVDCDMSNGGCNGGRMDDA-LQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIP----YGE  573 (655)
Q Consensus       499 ~~ls~q~l~~C~~~~~gC~GG~~~~a-~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~----~~~  573 (655)
                      +.||+|+|++|+..+.||+||++..| ++|++++ |+++|++|||.+...  +|.... .....++.+|..++    ..+
T Consensus       257 ~~LSeQ~LvdC~~~~~GC~GG~~~~aa~~yi~~~-Gi~tE~~yPY~~~~~--~C~~~~-~~~~~~~~~y~~v~~~~~~~~  332 (441)
T 3pdf_A          257 PILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQDF-GLVEEACFPYTGTDS--PCKMKE-DCFRYYSSEYHYVGGFYGGCN  332 (441)
T ss_dssp             CCBCHHHHHHHCTTSCTTBCCCHHHHTTHHHHHT-CBCBGGGSCCCSSCC--CSCCCS-SCCCBCEEEEEETTSSTTCCC
T ss_pred             cccCHHHHHhhccCCCCCCCCchhHHHHHHHHhc-CCCcHHHeeecccCC--CCCCcc-ccceeeeccEEEeCCccCCCc
Confidence            46999999999887889999999987 8999986 999999999998766  787643 33445678888885    358


Q ss_pred             HHHHHHHHHhCCCEEEEEEc-cccccccCCeeecCCCC--CC-CcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCc
Q psy11694        574 EEEMKKWVATRGPLSVGMNA-NGLFYYSGGVIDLNQRL--CN-PKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDW  649 (655)
Q Consensus       574 ~~~ik~~i~~~GPV~~~~~~-~~~~~y~~Gi~~~~~~~--~~-~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~W  649 (655)
                      +++||++|+++|||+++|++ .+|+.|++|||..+...  +. ...++|||+|||||++.   ..+.+|||||||||++|
T Consensus       333 e~~ik~al~~~GPVsvai~a~~~F~~Y~sGVy~~~~~~~~~~~~~~~~HaV~iVGyG~~~---~~G~~YWIVkNSWG~~W  409 (441)
T 3pdf_A          333 EALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDS---ASGMDYWIVKNSWGTGW  409 (441)
T ss_dssp             HHHHHHHHHHHCCEEEEECCCGGGGGCCSSEECCC---CCCCCCCCCCEEEEEEEEEECT---TTCCEEEEEECSBCTTS
T ss_pred             HHHHHHHHHHCCCeEEEEEecccccccCCceEecCCCCcccCCCCcCCeEEEEEEecccC---CCCceEEEEEcCCCCCc
Confidence            99999999999999999999 57889999999732210  11 13589999999999863   12678999999999999


Q ss_pred             CCCCCC
Q psy11694        650 GEKVML  655 (655)
Q Consensus       650 Ge~Gy~  655 (655)
                      ||+|||
T Consensus       410 Ge~GYf  415 (441)
T 3pdf_A          410 GENGYF  415 (441)
T ss_dssp             TBTTEE
T ss_pred             CCCeEE
Confidence            999997

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A

Probab=99.96  E-value=1.4e-30  Score=271.91  Aligned_cols=148  Identities=27%  Similarity=0.585  Sum_probs=116.6

Q ss_pred             ccccccccccCCCC--CCCCCCCCCccchHHHHHHcCCCCCCCCc-------ccCCCCC-------CCCCC---------
Q psy11694        498 LSRLATEKLVDCDM--SNGGCNGGRMDDALQYIIDNGGVVSDQAY-------PYKASES-------ERGCL---------  552 (655)
Q Consensus       498 ~~~ls~q~l~~C~~--~~~gC~GG~~~~a~~~~~~~~Gv~~e~~y-------PY~~~~~-------~~~c~---------  552 (655)
                      +++||+|+|++|+.  .+.||+||++..|++|++++ |+++|.+|       ||....+       ..+|.         
T Consensus       114 ~~~LSeq~LvdC~~~~~~~GC~GG~~~~A~~yi~~~-Gi~te~~Y~~~~~c~PY~~~~c~~~~~~~~~~C~~~~~~~~c~  192 (317)
T 3pbh_A          114 SVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCS  192 (317)
T ss_dssp             CCCBCHHHHHHHSCTTTBCGGGCBCHHHHHHHHHHT-CEEBBCSTTCCCBSSCCCSCCCCCCCTTCCSCCCSCCCCCCCC
T ss_pred             cccCCHHHHHHhccccCCCCCCCCCHHHHHHHHHHh-CCCcchhccCCCCCcCcccCcccccccCcCCCCCCcCCCCccc
Confidence            68999999999975  46899999999999999997 99999888       9985321       11332         


Q ss_pred             CCCcCCce-------EEEeeeEEcCCCCHHHHHHHHHhCCCEEEEEEc-cccccccCCeeecCCCCCCCcccCeEEEEEE
Q psy11694        553 VGEEEGFK-------VKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNA-NGLFYYSGGVIDLNQRLCNPKAQNHALIIVG  624 (655)
Q Consensus       553 ~~~~~~~~-------~~~~~~~~~~~~~~~~ik~~i~~~GPV~~~~~~-~~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVG  624 (655)
                      ..+.....       ........++ .++++||++|+++|||+++|++ .+|+.|++|||.   ..++...++|||+|||
T Consensus       193 ~~c~~~~~~~~~~~~~~~~~~~~v~-~~e~~i~~~i~~~GPV~v~i~~~~~f~~Y~~GVy~---~~~~~~~~~HaV~iVG  268 (317)
T 3pbh_A          193 KICEPGYSPTYKQDKHYGYNSYSVS-NSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQ---HVTGEMMGGHAIRILG  268 (317)
T ss_dssp             CSCCSSCCSCGGGSEECBCCCEEEC-SCHHHHHHHHHHHCCEEEEEEEEGGGGGEEEEEEC---CCSCCEEEEEEEEEEE
T ss_pred             ccccCCCccceeeeeeeeeecccCC-cHHHHHHHHHHHCCCEEEEEEecccccCCCCcEEc---cCCCCCCCCEEEEEEE
Confidence            11111110       1111223443 4899999999999999999999 578899999997   4566667899999999


Q ss_pred             EecccCCCCCCCCEEEEEcCCCCCcCCCCCC
Q psy11694        625 YGEEEKKDGTSIPYWIVKNSWGSDWGEKVML  655 (655)
Q Consensus       625 yg~~~~~~~~~~~ywivrNSWG~~WGe~Gy~  655 (655)
                      ||+++     +.+|||||||||++|||+|||
T Consensus       269 yG~~~-----g~~YWivkNSWG~~WGe~GY~  294 (317)
T 3pbh_A          269 WGVEN-----GTPYWLVANSWNTDWGDNGFF  294 (317)
T ss_dssp             EEEET-----TEEEEEEECSBCTTSTBTTEE
T ss_pred             EEEeC-----CeeEEEEEcCCCCCcCCCcEE
Confidence            99876     779999999999999999997

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X

Probab=99.96  E-value=4.4e-30  Score=262.76  Aligned_cols=157  Identities=27%  Similarity=0.518  Sum_probs=115.7

Q ss_pred             cccccccccccCCCCC--CCCCCCCCcc-chHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCc----------------C
Q psy11694        497 KLSRLATEKLVDCDMS--NGGCNGGRMD-DALQYIIDNGGVVSDQAYPYKASESERGCLVGEE----------------E  557 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~--~~gC~GG~~~-~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~----------------~  557 (655)
                      .+++||+|+|++|...  +.||.||... .++.|+.++.|+++|++|||........|+....                .
T Consensus        53 ~~~~LS~Q~lvdC~~~~~~~GC~GG~~~~~~~~~i~~~Ggi~~e~~yPY~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~  132 (265)
T 2wbf_X           53 EPTKISALYVANCYKGEHKDRCDEGSSPMEFLQIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNE  132 (265)
T ss_dssp             CCCCBCHHHHHHCCSSSCCCTTTCCCCHHHHHHHHHHHCCCCBTTTSCCCGGGTTSCCCCCCTTCCCTTTTCEECCCCCS
T ss_pred             CCCCcCHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHcCCCCCccccCCcCCCCCCCCCCccccccccccccccccccCC
Confidence            4688999999999853  6899999654 5567887774499999999986432225654221                0


Q ss_pred             CceEEEeeeEEcCC----CC----HHHHHHHHHhCCCEEEEEEcccccccc-CCeeecCCCCCCCcccCeEEEEEEEecc
Q psy11694        558 GFKVKVKEYSRIPY----GE----EEEMKKWVATRGPLSVGMNANGLFYYS-GGVIDLNQRLCNPKAQNHALIIVGYGEE  628 (655)
Q Consensus       558 ~~~~~~~~~~~~~~----~~----~~~ik~~i~~~GPV~~~~~~~~~~~y~-~Gi~~~~~~~~~~~~~~HaV~iVGyg~~  628 (655)
                      ....++.+|..++.    .+    +++||++|+++|||+++|++++|+.|+ +|++..  ..|+...++|||+|||||++
T Consensus       133 ~~~~~~~~y~~~~~~~~~~~~~~~~~~ik~~i~~~GPV~v~i~~~~f~~y~~~g~~~~--~~c~~~~~~HaV~iVGyG~~  210 (265)
T 2wbf_X          133 PNSLDGKGYTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVK--NLCGDDTADHAVNIVGYGNY  210 (265)
T ss_dssp             SSTTCCSSEEEEEGGGGTTCHHHHHHHHHHHHHHHSCEEEEECGGGGCSGGGGSSSEE--CCCCCSCCCEEEEEEEEEEE
T ss_pred             CceeecCCceEeeccccccchhhHHHHHHHHHHhcCCEEEEEEcccccccccCCcEEc--CCCCCCcCCEEEEEEEEeCC
Confidence            11235677777754    23    478999999999999999998777774 444321  34666678999999999986


Q ss_pred             cCCCCCCCCEEEEEcCCCCCcCCCCCC
Q psy11694        629 EKKDGTSIPYWIVKNSWGSDWGEKVML  655 (655)
Q Consensus       629 ~~~~~~~~~ywivrNSWG~~WGe~Gy~  655 (655)
                      ...+|++.+|||||||||++|||+|||
T Consensus       211 ~~~~g~~~~YWivkNSWG~~WGe~GY~  237 (265)
T 2wbf_X          211 VNSEGEKKSYWIVRNSWGPYWGDEGYF  237 (265)
T ss_dssp             ECTTSCEEEEEEEECSBCTTSTBTTEE
T ss_pred             cccCCCcCCEEEEEcCCCCccCCCCEE
Confidence            322333468999999999999999997

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*

Probab=99.96  E-value=2e-29  Score=255.97  Aligned_cols=149  Identities=26%  Similarity=0.607  Sum_probs=114.5

Q ss_pred             cccccccccccCCCC-CCCCCCCCCccchHHHHHHcCCCCCCCCc-------ccCCCC-------CCCCC----------
Q psy11694        497 KLSRLATEKLVDCDM-SNGGCNGGRMDDALQYIIDNGGVVSDQAY-------PYKASE-------SERGC----------  551 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~-~~~gC~GG~~~~a~~~~~~~~Gv~~e~~y-------PY~~~~-------~~~~c----------  551 (655)
                      .+++||+|+|++|.. .+.||.||++..|++|++++ |+++|.+|       ||....       ...+|          
T Consensus        52 ~~~~LSeQ~lvdC~~~~~~GC~GG~~~~a~~yi~~~-Gi~~e~~y~~~~~c~PY~~~~c~~~~~~~~~~C~~~~~~~~~c  130 (254)
T 3qsd_A           52 QNVELSAVDLLSCCESCGLGCEGGILGPAWDYWVKE-GIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGSKIYKTPRC  130 (254)
T ss_dssp             CCCCBCHHHHHHHCTTSBCTTBCBCHHHHHHHHHHT-CBCBCCCTTTCCSSSCCSSCCCBCSSCSSSCBCCSCCCCCCCC
T ss_pred             ccccCCHHHHHhhhcCCCCCCCCCCHHHHHHHHHHc-CCCcccccccCcCcCCcccccccccccCcCCCCcccccCCccc
Confidence            468899999999864 46899999999999999997 99998888       997321       01123          


Q ss_pred             CCCCcCCce-------EEEeeeEEcCCCCHHHHHHHHHhCCCEEEEEEc-cccccccCCeeecCCCCCCCcccCeEEEEE
Q psy11694        552 LVGEEEGFK-------VKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNA-NGLFYYSGGVIDLNQRLCNPKAQNHALIIV  623 (655)
Q Consensus       552 ~~~~~~~~~-------~~~~~~~~~~~~~~~~ik~~i~~~GPV~~~~~~-~~~~~y~~Gi~~~~~~~~~~~~~~HaV~iV  623 (655)
                      ...+.....       ........++ .++++||++|+++|||+++|++ .+|+.|++|||.   ..+....++|||+||
T Consensus       131 ~~~c~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~~~gPv~~~~~~~~~f~~y~~Gi~~---~~~~~~~~~Hav~iV  206 (254)
T 3qsd_A          131 KQTCQKKYKTPYTQDKHRGKSSYNVK-NDEKAIQKEIMKYGPVEAGFTVYEDFLNYKSGIYK---HITGETLGGHAIRII  206 (254)
T ss_dssp             CCCCCTTCCSCGGGGCBCCSEEEECC-SCHHHHHHHHHHHCCEEEEEEEEGGGGGCCSSEEC---CCSSCEEEEEEEEEE
T ss_pred             cccccCCccceeeeeeeeeeeeEecC-CcHHHHHHHHHHcCCEEEEEEeccccccccCCeec---cCCCCCCCCeEEEEE
Confidence            211111100       0111122343 4899999999999999999999 578899999997   344556679999999


Q ss_pred             EEecccCCCCCCCCEEEEEcCCCCCcCCCCCC
Q psy11694        624 GYGEEEKKDGTSIPYWIVKNSWGSDWGEKVML  655 (655)
Q Consensus       624 Gyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy~  655 (655)
                      |||+++     +.+|||||||||++|||+|||
T Consensus       207 Gyg~~~-----g~~ywivkNSWG~~WG~~Gy~  233 (254)
T 3qsd_A          207 GWGVEN-----KAPYWLIANSWNEDWGENGYF  233 (254)
T ss_dssp             EEEEET-----TEEEEEEECSBCTTSTBTTEE
T ss_pred             EEeecC-----CeeEEEEEeCCCCCcccCCeE
Confidence            999876     678999999999999999997

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa}

Probab=99.93  E-value=4e-27  Score=243.61  Aligned_cols=147  Identities=21%  Similarity=0.375  Sum_probs=116.0

Q ss_pred             cccccccccc--CCCC---C-CCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCC-CCCCCCC--------C-----cC
Q psy11694        498 LSRLATEKLV--DCDM---S-NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASES-ERGCLVG--------E-----EE  557 (655)
Q Consensus       498 ~~~ls~q~l~--~C~~---~-~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~-~~~c~~~--------~-----~~  557 (655)
                      +++||+|+|+  +|..   . ..+|.||++..|++|++++ ||++|++|||..... ...|...        +     ..
T Consensus        97 ~~~lS~q~l~~~~c~~~~~~~~~~c~GG~~~~A~~yi~~~-Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~p~~~C~~~  175 (291)
T 3ois_A           97 SPEFIPSRLFIYYNERKIEGHVNYDSGAMIRDGIKVLHKL-GVCPEKEWPYGDTPADPRTEEFPPGAPASKKPSDQCYKD  175 (291)
T ss_dssp             SSCCCBCHHHHHHHHHHHSSCTTSCCCEEHHHHHHHHHHT-CCCBGGGSCCCCCCCCTTTCSCCTTCGGGSCCCHHHHHH
T ss_pred             CCCcCcCHHHHHhhhhhhhcCCCCCCCcCHHHHHHHHHHh-CCCCHhhCCCCCCccccccccccccccccCCCCHHHHhh
Confidence            4579999998  5652   2 3468899999999999996 999999999998742 0134321        0     11


Q ss_pred             CceEEEeeeEEcCCCCHHHHHHHHHhCCCEEEEEEcc-ccccccC--CeeecCCCCC-CCcccCeEEEEEEEecccCCCC
Q psy11694        558 GFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNAN-GLFYYSG--GVIDLNQRLC-NPKAQNHALIIVGYGEEEKKDG  633 (655)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~ik~~i~~~GPV~~~~~~~-~~~~y~~--Gi~~~~~~~~-~~~~~~HaV~iVGyg~~~~~~~  633 (655)
                      ...+++.+|..++. ++++||++|+++|||+++|++. +|+.|++  |||..  ..| +...++|||+|||||+      
T Consensus       176 ~~~~~i~~y~~v~~-~e~~i~~al~~~gPV~v~~~~~~~f~~y~~~~Gi~~~--~~~~~~~~~~Hav~iVGy~~------  246 (291)
T 3ois_A          176 AQNYKITEYSRVAQ-DIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIPL--PTKNDTLEGGHAVLCVGYDD------  246 (291)
T ss_dssp             HGGGCCCEEEECCS-CHHHHHHHHHTTCCEEEEEEEEHHHHGGGCCCSBCCC--CCTTSCEEEEEEEEEEEEET------
T ss_pred             cccceeccEEEcCc-CHHHHHHHHHcCCCEEEEEEeccchhhcCCCCeEEeC--CCCCCCCcCCeEEEEEEEeC------
Confidence            23468899999976 8999999999999999999994 6888988  99962  223 3345699999999985      


Q ss_pred             CCCCEEEEEcCCCCCcCCCCCC
Q psy11694        634 TSIPYWIVKNSWGSDWGEKVML  655 (655)
Q Consensus       634 ~~~~ywivrNSWG~~WGe~Gy~  655 (655)
                       +.+|||||||||++||++|||
T Consensus       247 -~~~ywivkNSWG~~WG~~Gy~  267 (291)
T 3ois_A          247 -EIRHFRIRNSWGNNVGEDGYF  267 (291)
T ss_dssp             -TTTEEEEECSBCTTSTBTTEE
T ss_pred             -CCCEEEEEeCCCCCCCCCcEE
Confidence             347999999999999999997

>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A

Probab=99.87  E-value=1.4e-22  Score=217.39  Aligned_cols=74  Identities=15%  Similarity=0.156  Sum_probs=60.0

Q ss_pred             CCCccccccccCccccccCCCcceeeecccchhhHHhhhhhc-ccchhhhhhhccccccCCHHHHHHHHHHHHHHHHHHH
Q psy11694        147 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQ-GNNLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAE  225 (655)
Q Consensus       147 ~~P~~~DWr~~g~Vt~VkdQg~c~~~~a~~~~~~~e~~~~i~-~~~l~~~~~q~~~k~Y~~~~E~~~R~~iF~~n~~~I~  225 (655)
                      ..|..|+++....||||||||+||+||+||+++++|+.+.+. .+.++++|++-.- -|    +.++|-..|.+++....
T Consensus        47 ~~~~~F~~~~~~~~tpVknQg~cGsCWaFs~~~~le~~~~~k~~~~~~~lSe~yl~-fw----DKlEkan~flq~lidc~  121 (453)
T 2cb5_A           47 RAQHVFQHAVPQEGKPITNQKSSGRSWIFSCLNVMRLPFMKKLNIEEFEFSQSYLF-FW----DKVERCYFFLSAFVDTA  121 (453)
T ss_dssp             HCCCCCSEECSCCCSSCCBCCBSSCHHHHHHHHHHHHHHHHHTTCSCCCBCHHHHH-HH----HHHHHHHHHHHHHHHHH
T ss_pred             cCCCceeeeeccCCCCcccCCCccchHhhhhHHHHHHHHHHHhcCCeEeeChHHHH-HH----HHHHHhhHHHHHHHHHH
Confidence            467889999999999999999999999999999999999998 5788888864321 11    45677788888766654

>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A

Probab=99.86  E-value=1.4e-22  Score=217.48  Aligned_cols=72  Identities=18%  Similarity=0.167  Sum_probs=46.6

Q ss_pred             CCccccccccCccccccCCCcceeeecccchhhHHhhhhhc-ccchhhhhhhccccccCCHHHHHHHHHHHHHHHHHH
Q psy11694        148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQ-GNNLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKA  224 (655)
Q Consensus       148 ~P~~~DWr~~g~Vt~VkdQg~c~~~~a~~~~~~~e~~~~i~-~~~l~~~~~q~~~k~Y~~~~E~~~R~~iF~~n~~~I  224 (655)
                      .|..|+|+.++.||||||||+||+||+||+++++|+...+. .+.++++|++..-.     -++.+|-..|.+++-..
T Consensus        53 ~~~~F~~~~~~~vtpVknQg~cGsCWaFs~~~~lE~~~~~~~~~~~~~LSe~yl~~-----~dklEkan~flq~lvdc  125 (457)
T 2e01_A           53 DNRVFNTVVSTDSTPVTNQKSSGRCWLFAATNQLRLNVLSELNLKEFELSQAYLFF-----YDKLEKANYFLDQIVSS  125 (457)
T ss_dssp             CCCCCSEECC------------CCHHHHHHHHHHHHHHHHHTTCSSCCBCHHHHHH-----HHHHHHHHHHHHHHHHT
T ss_pred             CCCceEEEecCCccCcccCCCCccchhHHhHHHHHHHHHHHhCCCceeeCChhhhh-----hhHHHHHHHHHHHHHHh
Confidence            57789999999999999999999999999999999999988 77889888864211     14466777777775443

>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii}

Probab=99.78  E-value=1.7e-19  Score=155.22  Aligned_cols=71  Identities=21%  Similarity=0.269  Sum_probs=64.2

Q ss_pred             chHHHHHHHHHHcCcccCChHHHHHHHHHHHHHHHHHHHHhccCCCCeeeeccCCCCCCHHHH-HHHhCCCCC
Q psy11694         40 SPVTRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSGTAVFEVNKFFDLSDSDL-QQLTGLNLD  111 (655)
Q Consensus        40 ~~~~~f~~~~~~~~k~Y~~~~e~~~r~~~f~~n~~~i~~~n~~~~~~~~~g~N~fsDlt~~E~-~~~~g~~~~  111 (655)
                      ++..+|++||++|+|+|.+.+|+.+|++||++|+++|++||++ ..+|+||||+|||||.||| +.++|.+..
T Consensus        20 ~~~~~F~~wk~~~~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~-~~sy~lglN~FaDLT~eEF~~~~lg~~~~   91 (106)
T 3f75_P           20 HFQDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQ-GYSYSLKMNHFGDLSRDEFRRKYLGFKKS   91 (106)
T ss_dssp             HHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHTS-CCSEEECCCTTTTCCHHHHHHHSCCBCC-
T ss_pred             HHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhc-CCCeeeCCcccccCCHHHHHHHHcCCCCC
Confidence            4567899999999999999999999999999999999999987 7899999999999999999 567776654

>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster}

Probab=99.76  E-value=7.1e-19  Score=144.96  Aligned_cols=69  Identities=23%  Similarity=0.392  Sum_probs=61.7

Q ss_pred             hHHHHHHHHHHcCcccCChHHHHHHHHHHHHHHHHHHHHhccC---CCCeeeeccCCCCCCHHHHHHHhCCCC
Q psy11694         41 PVTRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQRED---SGTAVFEVNKFFDLSDSDLQQLTGLNL  110 (655)
Q Consensus        41 ~~~~f~~~~~~~~k~Y~~~~e~~~r~~~f~~n~~~i~~~n~~~---~~~~~~g~N~fsDlt~~E~~~~~g~~~  110 (655)
                      +..+|+.||.+|+|+|.+.+|+.+| +||++|+++|++||++.   ..+|++|||+|||||+|||+.++|++.
T Consensus         6 ~~~~f~~~k~~~~K~Y~~~~E~~~R-~iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlT~eEf~~~~g~~~   77 (80)
T 2l95_A            6 SDEEWVEYKSKFDKNYEAEEDLMRR-RIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTPEEFAQRSGKKV   77 (80)
T ss_dssp             CHHHHHHHHHHHTCCCCHHHHHHHH-HHHHHHHHHHHHHHTTGGGTSCCCCCCCCGGGTSSHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHhccCCCCeEecCcccccCCHHHHHHHhCCCC
Confidence            4568999999999999998899999 99999999999999863   478999999999999999966777654

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}

Probab=99.66  E-value=1e-16  Score=168.35  Aligned_cols=44  Identities=25%  Similarity=0.424  Sum_probs=40.6

Q ss_pred             CccccccCCCcceeeecccchhhHHhhhhhcccchhhhhhhccc
Q psy11694        158 GVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHHD  201 (655)
Q Consensus       158 g~Vt~VkdQg~c~~~~a~~~~~~~e~~~~i~~~~l~~~~~q~~~  201 (655)
                      -.||||||||+||+|||||+++++|+.+.+..+.++++|+|+.-
T Consensus        20 ~~vtpVknQg~cGsCWaFSa~~~lE~~~~~k~~~~~~LSeq~Lv   63 (383)
T 3pw3_A           20 NPITSVKNQNRAGTCWCYSSYSFLESELLRMGKGEYDLSEMFTV   63 (383)
T ss_dssp             CCCCCCCBCCBSSCHHHHHHHHHHHHHHHHTTCCCCCBCHHHHH
T ss_pred             cCCCCcccCCCCcHHHHHHhHHHHHHHHHHHcCCCCccChHHHH
Confidence            35899999999999999999999999999999999999998754

>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii}

Probab=99.45  E-value=8.5e-14  Score=119.76  Aligned_cols=68  Identities=19%  Similarity=0.213  Sum_probs=62.1

Q ss_pred             chhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeCcCCCCChHHHHh-hcCCCCC
Q psy11694        191 NLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQ-LTGLNLD  259 (655)
Q Consensus       191 ~l~~~~~q~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~~~~~g~N~FsDlt~eEf~~-~~~~~~~  259 (655)
                      .+|+.|+.+|+|.|.+.+|+..|+.||++|++.|++||+. ..+|++|+|+|+|||.+||.+ ++|++..
T Consensus        23 ~~F~~wk~~~~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~-~~sy~lglN~FaDLT~eEF~~~~lg~~~~   91 (106)
T 3f75_P           23 DAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQ-GYSYSLKMNHFGDLSRDEFRRKYLGFKKS   91 (106)
T ss_dssp             HHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHTS-CCSEEECCCTTTTCCHHHHHHHSCCBCC-
T ss_pred             HHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhc-CCCeeeCCcccccCCHHHHHHHHcCCCCC
Confidence            4699999999999999889999999999999999999987 679999999999999999999 8886544

>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster}

Probab=99.43  E-value=7.5e-14  Score=114.80  Aligned_cols=68  Identities=22%  Similarity=0.330  Sum_probs=60.3

Q ss_pred             ccchhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHhcC---CCCceeeeeCcCCCCChHHHHh-hcCCCC
Q psy11694        189 GNNLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSE---DSGTAVFGVNKFFDLSESDLQQ-LTGLNL  258 (655)
Q Consensus       189 ~~~l~~~~~q~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~---~~~~~~~g~N~FsDlt~eEf~~-~~~~~~  258 (655)
                      ....|+.|+.+|+|.|.+.+|+..| .||++|++.|++||+.   +..+|++|+|+|+|||.+|| + ++|++.
T Consensus         6 ~~~~f~~~k~~~~K~Y~~~~E~~~R-~iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlT~eEf-~~~~g~~~   77 (80)
T 2l95_A            6 SDEEWVEYKSKFDKNYEAEEDLMRR-RIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTPEEF-AQRSGKKV   77 (80)
T ss_dssp             CHHHHHHHHHHHTCCCCHHHHHHHH-HHHHHHHHHHHHHHTTGGGTSCCCCCCCCGGGTSSHHHH-HHHHTSCC
T ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHhccCCCCeEecCcccccCCHHHH-HHHhCCCC
Confidence            4457999999999999988888999 9999999999999985   35689999999999999999 7 887543

>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid, hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1 d.17.1.4

Probab=89.68  E-value=1.9  Score=43.70  Aligned_cols=92  Identities=14%  Similarity=0.177  Sum_probs=62.7

Q ss_pred             ccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHHH
Q psy11694        498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEM  577 (655)
Q Consensus       498 ~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~i  577 (655)
                      -..+|+++|.++        |..+...++|++.. |..                           +.-..  ..-+.+.+
T Consensus       237 yPN~S~~~l~~t--------s~~~~q~Iky~qsy-G~~---------------------------~~~~n--~~ls~deV  278 (367)
T 1x9y_A          237 YPEVSEQDLPNC--------ATFPNQMIEYGKSQ-GRD---------------------------IHYQE--GVPSYNQV  278 (367)
T ss_dssp             CTTSCTTTGGGC--------CCCHHHHHHHHHHT-TEE---------------------------EEEEE--SCCCHHHH
T ss_pred             CCCCChhHHhhc--------CCCHHHHHHHHHHh-Ccc---------------------------hhhhc--CCCCHHHH
Confidence            357888998874        66788888888853 311                           11111  12378899


Q ss_pred             HHHHHhCCCEEEEEEccccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCC
Q psy11694        578 KKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSW  645 (655)
Q Consensus       578 k~~i~~~GPV~~~~~~~~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSW  645 (655)
                      ++.|..+-||++.+...+-             .......+|||+||||-..+     +.+|.+|-|=|
T Consensus       279 k~~id~Nk~I~v~~~~v~~-------------~~n~~~~gHAlavvGyA~~~-----~~~~y~~WNPW  328 (367)
T 1x9y_A          279 DQLTKDNVGIMILAQSVSQ-------------NPNDPHLGHALAVVGNAKIN-----DQEKLIYWNPW  328 (367)
T ss_dssp             HHHHHTTCCEEEEEEETTS-------------CSSSCCCSEEEEEEEEEEET-----TEEEEEEECTT
T ss_pred             HHHHhcCCcEEEEcccccc-------------CCCCccCceeEEEEeccccC-----CCcEEEEecCc
Confidence            9999999999988874210             11223568999999994433     56899998887

>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1

Probab=81.87  E-value=19  Score=32.87  Aligned_cols=113  Identities=13%  Similarity=0.139  Sum_probs=76.8

Q ss_pred             CCCCCccHHHHHHHHHHHHHHHHh--------cCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHHcCCCCCCCCCCC
Q psy11694        313 EQGKCACCWAFSAVGVVEAMHAIQ--------GNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPY  384 (655)
Q Consensus       313 dQg~CGsCwAfa~~~~le~~~~i~--------~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY  384 (655)
                      .||.-+=|-+|+.++.|-+.....        +.....+|+++|..+        |..+...++|+... |-...    +
T Consensus        17 TQg~~pWCa~Ya~aailN~~~~~~~~~A~~imr~~yPn~S~~~l~~~--------~~t~~e~iky~~s~-g~~~~----~   83 (174)
T 1cv8_A           17 TQGNNGWCAGYTMSALLNATYNTNKYHAEAVMRFLHPNLQGQQFQFT--------GLTPREMIYFGQTQ-GRSPQ----L   83 (174)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHHTCCCCCHHHHHHHHCSSCCHHHHHHC--------CCCHHHHHHHHHHT-TCCCE----E
T ss_pred             ccCCCchHHHHHHHHHHHhhhccCcCCHHHHHHHHCCCCCHHHHhhc--------CCCHHHHHHHHHHc-CCChh----h
Confidence            589999999999999987755221        122367999999965        45688999998776 31100    0


Q ss_pred             CCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCCcccccccEEeCCceE--EcC-----Cc
Q psy11694        385 KASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRL--YGT-----SI  457 (655)
Q Consensus       385 ~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~~~~Y~~Gi~~~~Hav--yg~-----g~  457 (655)
                      .                         ...-+.+.+++++.++-|+.+..+.-+-..   | -..+||+  .|.     +.
T Consensus        84 ~-------------------------n~~ls~~eV~~~~~~nk~i~i~~~~ve~~~---~-~~~gHAlav~Gy~~~~ng~  134 (174)
T 1cv8_A           84 L-------------------------NRMTTYNEVDNLTKNNKGIAILGSRVESRN---G-MHAGHAMAVVGNAKLNNGQ  134 (174)
T ss_dssp             E-------------------------SSCCCHHHHHHHHHTTCCEEEEEEESSCBT---T-BCCEEEEEEEEEEEETTSC
T ss_pred             h-------------------------cCCCCHHHHHHHHhcCCceEEEcccccCCC---C-CCCceeEEEEeeeeecCCc
Confidence            0                         001157899999999999988877543111   2 1257988  443     68


Q ss_pred             cEEEEecCCC
Q psy11694        458 PYWIVKNSWG  467 (655)
Q Consensus       458 ~yWivkNSWG  467 (655)
                      +|.++=|=|-
T Consensus       135 ~~y~~WNPW~  144 (174)
T 1cv8_A          135 EVIIIWNPWD  144 (174)
T ss_dssp             EEEEEECTTC
T ss_pred             eEEEEeCCcc
Confidence            8999988775

>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}

Probab=81.47  E-value=3.5  Score=40.13  Aligned_cols=53  Identities=23%  Similarity=0.351  Sum_probs=34.8

Q ss_pred             cCCCCHHHHHHHHHhCCCEEEEEEcc-------cccc--ccCCeeecCCCCCCCcccCeEEEEEEEecc
Q psy11694        569 IPYGEEEEMKKWVATRGPLSVGMNAN-------GLFY--YSGGVIDLNQRLCNPKAQNHALIIVGYGEE  628 (655)
Q Consensus       569 ~~~~~~~~ik~~i~~~GPV~~~~~~~-------~~~~--y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~  628 (655)
                      +.-.+.++|+..|.++.||++-.+..       .|..  ..+|.+.       -...+|+|+|+||++.
T Consensus       127 ltG~sl~~L~~~I~~G~PVIv~~t~~~~p~~~~~~~~W~~~~G~~~-------~~~~~H~VVl~GYd~~  188 (236)
T 3erv_A          127 LTGKSIEELYKSVKAGQPVVIITNATFAPLDEDEFTTWETNNGDVS-------ITYNEHCVVLIGYDQE  188 (236)
T ss_dssp             CTTSCHHHHHHHHHTTCCEEEEEETTSSCCCGGGCEEEEETTEEEE-------ECTTEEEEEEEEECSS
T ss_pred             cCCCCHHHHHHHHHCCCeEEEEEeCCcccccccccceeecCCCcee-------eccCCeEEEEEEEeCC
Confidence            44458999999999888999977642       1111  1233221       1235799999999874

>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1

Probab=80.49  E-value=4.8  Score=36.78  Aligned_cols=92  Identities=13%  Similarity=0.122  Sum_probs=61.6

Q ss_pred             ccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHHH
Q psy11694        498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEM  577 (655)
Q Consensus       498 ~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~i  577 (655)
                      -..+|+++|..+        |..+...++|++.. |...               .             + .-..-+.+++
T Consensus        52 yPn~S~~~l~~~--------~~t~~e~iky~~s~-g~~~---------------~-------------~-~n~~ls~~eV   93 (174)
T 1cv8_A           52 HPNLQGQQFQFT--------GLTPREMIYFGQTQ-GRSP---------------Q-------------L-LNRMTTYNEV   93 (174)
T ss_dssp             CSSCCHHHHHHC--------CCCHHHHHHHHHHT-TCCC---------------E-------------E-ESSCCCHHHH
T ss_pred             CCCCCHHHHhhc--------CCCHHHHHHHHHHc-CCCh---------------h-------------h-hcCCCCHHHH
Confidence            457888888754        55677888888775 3100               0             0 1112368899


Q ss_pred             HHHHHhCCCEEEEEEccccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCC
Q psy11694        578 KKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSW  645 (655)
Q Consensus       578 k~~i~~~GPV~~~~~~~~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSW  645 (655)
                      ++.+.++-||.+..+.-+   ..           .....+|||+||||-.-.+    +.+|.+|=|=|
T Consensus        94 ~~~~~~nk~i~i~~~~ve---~~-----------~~~~~gHAlav~Gy~~~~n----g~~~y~~WNPW  143 (174)
T 1cv8_A           94 DNLTKNNKGIAILGSRVE---SR-----------NGMHAGHAMAVVGNAKLNN----GQEVIIIWNPW  143 (174)
T ss_dssp             HHHHHTTCCEEEEEEESS---CB-----------TTBCCEEEEEEEEEEEETT----SCEEEEEECTT
T ss_pred             HHHHhcCCceEEEccccc---CC-----------CCCCCceeEEEEeeeeecC----CceEEEEeCCc
Confidence            999999889987776421   11           1135689999999987532    56899998888

>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A

Probab=80.22  E-value=4.8  Score=36.86  Aligned_cols=90  Identities=14%  Similarity=0.182  Sum_probs=62.5

Q ss_pred             cccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHHHH
Q psy11694        499 SRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMK  578 (655)
Q Consensus       499 ~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ik  578 (655)
                      +.+|+++|.++        |..+...++|.+.. |...                       .+.      ...-+.++++
T Consensus        62 PN~s~~~l~~t--------~~~~~q~Iky~~s~-G~~~-----------------------~~~------nr~ls~neV~  103 (183)
T 1pxv_A           62 PEVSEQDLPNC--------ATFPNQMIEYGKSQ-GRDI-----------------------HYQ------EGVPSYNQVD  103 (183)
T ss_dssp             TTSCTTTGGGC--------CBCHHHHHHHHHHT-TCCC-----------------------EEE------ESCCCHHHHH
T ss_pred             CCCChhHHhhc--------CCCHHHHHHHHHHc-CcCh-----------------------hHh------cCCCCHHHHH
Confidence            46788888774        56778888888763 4211                       010      1123788999


Q ss_pred             HHHHhCCCEEEEEEc-cccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCC
Q psy11694        579 KWVATRGPLSVGMNA-NGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSW  645 (655)
Q Consensus       579 ~~i~~~GPV~~~~~~-~~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSW  645 (655)
                      +.|.++-||.+...- +.              .......+||++||||-.-+     +.++.+|-|=|
T Consensus       104 ~~i~~Nk~I~v~~~~v~e--------------~~~~~~~gHA~av~Gya~~~-----~~~~y~~WNPW  152 (183)
T 1pxv_A          104 QLTKDNVGIMILAQSVSQ--------------NPNDPHLGHALAVVGNAKIN-----DQEKLIYWNPW  152 (183)
T ss_dssp             HHHHTTCCEEEEEECCCS--------------STTSCCCEEEEEEEEEEEET-----TEEEEEEECTT
T ss_pred             HHHhcCCcEEEEcccccc--------------CCCCccCceeEEEEeeeecC-----CCeEEEEeCCc
Confidence            999999999987763 21              11223568999999998765     56789998888

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	655
d1m6da_	214	d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta	2e-39
d1m6da_	214	d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta	2e-21
d1m6da_	214	d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta	1e-16
d2h7ja1	217	d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sa	6e-39
d2h7ja1	217	d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sa	7e-21
d2h7ja1	217	d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sa	9e-17
d2r6na1	215	d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa	1e-38
d2r6na1	215	d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa	4e-21
d2r6na1	215	d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa	6e-16
d1cqda_	216	d.3.1.1 (A:) Proline-specific cysteine protease {G	3e-38
d1cqda_	216	d.3.1.1 (A:) Proline-specific cysteine protease {G	1e-18
d1cqda_	216	d.3.1.1 (A:) Proline-specific cysteine protease {G	2e-16
d1iwda_	215	d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia	3e-38
d1iwda_	215	d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia	2e-16
d1iwda_	215	d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia	3e-16
d1fh0a_	221	d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens	8e-38
d1fh0a_	221	d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens	4e-18
d1fh0a_	221	d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens	7e-16
d1o0ea_	208	d.3.1.1 (A:) Ervatamin C {East indian rosebay (Erv	1e-37
d1o0ea_	208	d.3.1.1 (A:) Ervatamin C {East indian rosebay (Erv	3e-16
d1o0ea_	208	d.3.1.1 (A:) Ervatamin C {East indian rosebay (Erv	8e-16
g8pch.1	228	d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [Tax	4e-36
g8pch.1	228	d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [Tax	5e-18
g8pch.1	228	d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [Tax	2e-15
d1aeca_	218	d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi	8e-36
d1aeca_	218	d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi	1e-17
d1aeca_	218	d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi	2e-15
d2oula1	241	d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falcip	5e-35
d2oula1	241	d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falcip	1e-17
d2oula1	241	d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falcip	2e-16
d1gmya_	254	d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens	5e-35
d1gmya_	254	d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens	5e-20
d1gmya_	254	d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens	2e-13
d1yala_	218	d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [	9e-35
d1yala_	218	d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [	2e-16
d1yala_	218	d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [	5e-16
d1s4va_	224	d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor	1e-34
d1s4va_	224	d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor	4e-16
d1s4va_	224	d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor	5e-16
d1ppoa_	216	d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca	1e-33
d1ppoa_	216	d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca	2e-17
d1ppoa_	216	d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca	7e-14
d1me4a_	215	d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 56	1e-33
d1me4a_	215	d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 56	2e-14
d1me4a_	215	d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 56	3e-14
d1khqa_	212	d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId	1e-31
d1khqa_	212	d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId	4e-17
d1khqa_	212	d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId	2e-10
d1cs8a_	316	d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens	2e-31
d1cs8a_	316	d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens	1e-22
d1cs8a_	316	d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens	2e-12
g1k3b.1	233	d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase	6e-31
g1k3b.1	233	d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase	3e-17
g1k3b.1	233	d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase	1e-13
d1xkga1	302	d.3.1.1 (A:4-305) Major mite fecal allergen der p	3e-29
d1xkga1	302	d.3.1.1 (A:4-305) Major mite fecal allergen der p	2e-16
d1xkga1	302	d.3.1.1 (A:4-305) Major mite fecal allergen der p	7e-15
d1deua_	275	d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens	8e-25
d1deua_	275	d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens	1e-14
d1deua_	275	d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens	4e-10
d3gcba_	458	d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (S	4e-06
d2cb5a_	453	d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapi	7e-06

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (358), Expect = 2e-39
 Identities = 63/193 (32%), Positives = 95/193 (49%), Gaps = 20/193 (10%)

Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P  +DWR++G ++KVK+QG C  CWAFS  G VE    +   +L  LS Q+L+DCD  + 
Sbjct: 2   PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDK 61

Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEE 416
            C GG   +A   I + GG+ ++  Y Y+                     + S      E
Sbjct: 62  ACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQF----SAEKAKVYIQDSVELSQNE 117

Query: 417 EEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLYGTSI----------------PYW 460
           +++  W+A RGP+SV +NA G+ +Y  G+    + L    +                P+W
Sbjct: 118 QKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFW 177

Query: 461 IVKNSWGSDWGEK 473
            +KNSWG+DWGEK
Sbjct: 178 AIKNSWGTDWGEK 190

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.2 bits (225), Expect = 2e-21
 Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 9/156 (5%)

Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEE 556
            L  L+ ++L+DCD  +  C GG   +A   I + GG+ ++  Y Y+             
Sbjct: 44  TLLSLSEQELLDCDKMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQF----S 99

Query: 557 EGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQ 616
                   + S      E+++  W+A RGP+SV +NA G+ +Y  G+    + LC+P   
Sbjct: 100 AEKAKVYIQDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLI 159

Query: 617 NHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           +HA+++VGYG+         P+W +KNSWG+DWGEK
Sbjct: 160 DHAVLLVGYGQRSDV-----PFWAIKNSWGTDWGEK 190

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (188), Expect = 1e-16
 Identities = 23/52 (44%), Positives = 30/52 (57%)

Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHH 200
           P  +DWR++G ++KVK+QG C  CWAFS  G VE    +    L  LS Q  
Sbjct: 2   PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQEL 53

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (354), Expect = 6e-39
 Identities = 79/196 (40%), Positives = 114/196 (58%), Gaps = 21/196 (10%)

Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVD---CD 352
           LP++ DWR +G +++VK QG C  CWAFSAVG +EA   ++   L  LS Q LVD     
Sbjct: 1   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60

Query: 353 MSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIP 412
             N GCNGG M  A QYIIDN G+ SD +YPYKA + +      + +       +Y+ +P
Sbjct: 61  YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQY---DSKYRAATCSKYTELP 117

Query: 413 YGEEEEMKKWVATRGPLSVGMNA---------NGLFYYSGGVIDLNQRL----YGTS--I 457
           YG E+ +K+ VA +GP+SVG++A         +G++Y      ++N  +    YG     
Sbjct: 118 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 177

Query: 458 PYWIVKNSWGSDWGEK 473
            YW+VKNSWG ++GE+
Sbjct: 178 EYWLVKNSWGHNFGEE 193

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (220), Expect = 7e-21
 Identities = 54/144 (37%), Positives = 81/144 (56%), Gaps = 9/144 (6%)

Query: 509 CDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSR 568
               N GCNGG M  A QYIIDN G+ SD +YPYKA + +      + +       +Y+ 
Sbjct: 59  EKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQY---DSKYRAATCSKYTE 115

Query: 569 IPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEE 628
           +PYG E+ +K+ VA +GP+SVG++A    ++        +  C     NH +++VGYG+ 
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNV-NHGVLVVGYGDL 174

Query: 629 EKKDGTSIPYWIVKNSWGSDWGEK 652
             K      YW+VKNSWG ++GE+
Sbjct: 175 NGK-----EYWLVKNSWGHNFGEE 193

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (189), Expect = 9e-17
 Identities = 25/54 (46%), Positives = 35/54 (64%)

Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHHD 201
           LP++ DWR +G +++VK QG C  CWAFSAVG +EA   ++   L  LS Q+  
Sbjct: 1   LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLV 54

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (352), Expect = 1e-38
 Identities = 71/193 (36%), Positives = 97/193 (50%), Gaps = 19/193 (9%)

Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P++ D+R +G ++ VK QG+C  CWAFS+VG +E     +   L  LS Q LVDC   N 
Sbjct: 2   PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61

Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEE 416
           GC GG M +A QY+  N G+ S+ AYPY   E           G   K + Y  IP G E
Sbjct: 62  GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMY---NPTGKAAKCRGYREIPEGNE 118

Query: 417 EEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQ--------------RLYGTSIPYW 460
           + +K+ VA  GP+SV ++A+     +YS GV                           +W
Sbjct: 119 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 178

Query: 461 IVKNSWGSDWGEK 473
           I+KNSWG +WG K
Sbjct: 179 IIKNSWGENWGNK 191

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.1 bits (222), Expect = 4e-21
 Identities = 58/156 (37%), Positives = 80/156 (51%), Gaps = 8/156 (5%)

Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEE 556
           KL  L+ + LVDC   N GC GG M +A QY+  N G+ S+ AYPY   E          
Sbjct: 44  KLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMY---NP 100

Query: 557 EGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQ 616
            G   K + Y  IP G E+ +K+ VA  GP+SV ++A+   +            CN    
Sbjct: 101 TGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNL 160

Query: 617 NHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           NHA++ VGYG ++        +WI+KNSWG +WG K
Sbjct: 161 NHAVLAVGYGIQKGNK-----HWIIKNSWGENWGNK 191

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.0 bits (183), Expect = 6e-16
 Identities = 21/51 (41%), Positives = 32/51 (62%)

Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
           P++ D+R +G ++ VK QG+C  CWAFS+VG +E     +   L  LS Q+
Sbjct: 2   PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQN 52

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

 Score =  138 bits (349), Expect = 3e-38
 Identities = 66/192 (34%), Positives = 92/192 (47%), Gaps = 18/192 (9%)

Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           LP++ DWR  G +  VK QG C  CWAFS V  VE ++ I    L  LS QQLVDC  +N
Sbjct: 1   LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTAN 60

Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGE 415
            GC GG M+ A Q+I++NGG+ S++ YPY+  +              V   +        
Sbjct: 61  HGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICNS----TVNAPVVSIDSYENVPSH 116

Query: 416 EEEMKKWVATRGPLSVGMNANGLFY--YSGGVIDLNQRLYGT------------SIPYWI 461
            E+  +      P+SV M+A G  +  Y  G+   +  +                  +WI
Sbjct: 117 NEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYGTENDKDFWI 176

Query: 462 VKNSWGSDWGEK 473
           VKNSWG +WGE 
Sbjct: 177 VKNSWGKNWGES 188

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

 Score = 83.1 bits (204), Expect = 1e-18
 Identities = 50/149 (33%), Positives = 72/149 (48%), Gaps = 11/149 (7%)

Query: 504 EKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKV 563
           ++LVDC  +N GC GG M+ A Q+I++NGG+ S++ YPY+  +              V  
Sbjct: 51  QQLVDCTTANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICNS----TVNAPVVS 106

Query: 564 KEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIV 623
            +         E+  +      P+SV M+A G  +                + NHAL +V
Sbjct: 107 IDSYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTG--SCNISANHALTVV 164

Query: 624 GYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           GYG E  KD     +WIVKNSWG +WGE 
Sbjct: 165 GYGTENDKD-----FWIVKNSWGKNWGES 188

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

 Score = 76.2 bits (186), Expect = 2e-16
 Identities = 24/52 (46%), Positives = 30/52 (57%)

Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
           LP++ DWR  G +  VK QG C  CWAFS V  VE ++ I   +L  LS Q 
Sbjct: 1   LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQ 52

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

 Score =  139 bits (349), Expect = 3e-38
 Identities = 64/191 (33%), Positives = 96/191 (50%), Gaps = 17/191 (8%)

Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           LP   DWR++G ++ +K Q +C  CWAFSAV  VE+++ I+   L  LS Q+LVDCD ++
Sbjct: 1   LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60

Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGE 415
            GCNGG M++A QYII NGG+ + Q YPY A +              V +  + R+    
Sbjct: 61  HGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYRLR----VVSINGFQRVTRNN 116

Query: 416 EEEMKKWVATRGPLSVGMNANGLFYYSGGV-------------IDLNQRLYGTSIPYWIV 462
           E  ++  VA++        A   F +                 + +      +   YWIV
Sbjct: 117 ESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGTQSGKNYWIV 176

Query: 463 KNSWGSDWGEK 473
           +NSWG +WG +
Sbjct: 177 RNSWGQNWGNQ 187

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

 Score = 76.2 bits (186), Expect = 2e-16
 Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 12/153 (7%)

Query: 500 RLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGF 559
            L+ ++LVDCD ++ GCNGG M++A QYII NGG+ + Q YPY A +             
Sbjct: 47  SLSEQELVDCDTASHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYRLR---- 102

Query: 560 KVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHA 619
            V +  + R+    E  ++  VA++        A   F +    I           QNH 
Sbjct: 103 VVSINGFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTA---QNHG 159

Query: 620 LIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           ++IVGYG +  K+     YWIV+NSWG +WG +
Sbjct: 160 VVIVGYGTQSGKN-----YWIVRNSWGQNWGNQ 187

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

 Score = 75.8 bits (185), Expect = 3e-16
 Identities = 23/52 (44%), Positives = 33/52 (63%)

Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
           LP   DWR++G ++ +K Q +C  CWAFSAV  VE+++ I+   L  LS Q 
Sbjct: 1   LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQE 52

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (346), Expect = 8e-38
 Identities = 69/200 (34%), Positives = 98/200 (49%), Gaps = 25/200 (12%)

Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDC--DM 353
           LP++ DWR +G ++ VK Q +C  CWAFSA G +E     +   L  LS Q LVDC    
Sbjct: 1   LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60

Query: 354 SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPY 413
            N GCNGG M  A QY+ +NGG+ S+++YPY A +          E    +   ++ +  
Sbjct: 61  GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKY---RPENSVAQDTGFTVVAP 117

Query: 414 GEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVIDLNQRLY------------------ 453
           G+E+ + K VAT GP+SV M+A      +Y  G+                          
Sbjct: 118 GKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGAN 177

Query: 454 GTSIPYWIVKNSWGSDWGEK 473
             +  YW+VKNSWG +WG  
Sbjct: 178 SDNSKYWLVKNSWGPEWGSN 197

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.6 bits (200), Expect = 4e-18
 Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 8/146 (5%)

Query: 509 CDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSR 568
               N GCNGG M  A QY+ +NGG+ S+++YPY A +          E    +   ++ 
Sbjct: 58  RPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKY---RPENSVAQDTGFTV 114

Query: 569 IPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVIDLNQRLCNPKAQNHALIIVGYG 626
           +  G+E+ + K VAT GP+SV M+A      +Y  G+                ++  G+ 
Sbjct: 115 VAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGF- 173

Query: 627 EEEKKDGTSIPYWIVKNSWGSDWGEK 652
             E  +  +  YW+VKNSWG +WG  
Sbjct: 174 --EGANSDNSKYWLVKNSWGPEWGSN 197

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.0 bits (183), Expect = 7e-16
 Identities = 22/53 (41%), Positives = 31/53 (58%)

Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHH 200
           LP++ DWR +G ++ VK Q +C  CWAFSA G +E     +   L  LS Q+ 
Sbjct: 1   LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNL 53

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Length = 208

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

 Score =  136 bits (343), Expect = 1e-37
 Identities = 67/182 (36%), Positives = 88/182 (48%), Gaps = 4/182 (2%)

Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           LPE  DWR +G ++ VK QG C  CWAFS V  VE+++ I+  +L  LS Q+LVDCD  N
Sbjct: 1   LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKN 60

Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASES--ERGCLVGEEEGFKVKVKEYSRIPY 413
            GC GG    A QYII+NGG+ +   YPYKA +   +    V   +G+            
Sbjct: 61  HGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPCQAASKVVSIDGYNGVPFCNEXALK 120

Query: 414 GEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQ--RLYGTSIPYWIVKNSWGSDWG 471
                    VA     +     +   +       LN    + G    YWIV+NSWG  WG
Sbjct: 121 QAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGYQANYWIVRNSWGRYWG 180

Query: 472 EK 473
           EK
Sbjct: 181 EK 182

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Length = 208

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

 Score = 75.8 bits (185), Expect = 3e-16
 Identities = 51/147 (34%), Positives = 67/147 (45%), Gaps = 17/147 (11%)

Query: 506 LVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKE 565
           LVDCD  N GC GG    A QYII+NGG+ +   YPYKA +    C   +     V +  
Sbjct: 53  LVDCDKKNHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGP--C---QAASKVVSIDG 107

Query: 566 YSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGY 625
           Y+ +P+  E  +K+ VA +        ++  F      I            NH + IVGY
Sbjct: 108 YNGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKL---NHGVTIVGY 164

Query: 626 GEEEKKDGTSIPYWIVKNSWGSDWGEK 652
                       YWIV+NSWG  WGEK
Sbjct: 165 QAN---------YWIVRNSWGRYWGEK 182

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Length = 208

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

 Score = 74.6 bits (182), Expect = 8e-16
 Identities = 26/52 (50%), Positives = 33/52 (63%)

Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
           LPE  DWR +G ++ VK QG C  CWAFS V  VE+++ I+  NL  LS Q 
Sbjct: 1   LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQE 52

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

 Score =  132 bits (331), Expect = 8e-36
 Identities = 69/194 (35%), Positives = 97/194 (50%), Gaps = 19/194 (9%)

Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS- 354
           LP   DWR+ G +  +K QG+C  CWAFSA+  VE ++ I    L  LS Q+L+DC  + 
Sbjct: 1   LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60

Query: 355 -NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPY 413
              GCNGG + D  Q+II+NGG+ +++ YPY A + E      + +  K    +      
Sbjct: 61  NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNV---DLQNEKYVTIDTYENVP 117

Query: 414 GEEEEMKKWVATRGPLSVGMNANGLF--YYSGGVIDLNQRL----------YGT--SIPY 459
              E   +   T  P+SV ++A G     YS G+                 YGT   I Y
Sbjct: 118 YNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYGTEGGIDY 177

Query: 460 WIVKNSWGSDWGEK 473
           WIVKNSW + WGE+
Sbjct: 178 WIVKNSWDTTWGEE 191

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

 Score = 80.4 bits (197), Expect = 1e-17
 Identities = 51/156 (32%), Positives = 75/156 (48%), Gaps = 14/156 (8%)

Query: 500 RLATEKLVDCDMS--NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEE 557
            L+ ++L+DC  +    GCNGG + D  Q+II+NGG+ +++ YPY A + E      + +
Sbjct: 47  SLSEQELIDCGRTQNTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNV---DLQ 103

Query: 558 GFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG-LFYYSGGVIDLNQRLCNPKAQ 616
             K    +         E   +   T  P+SV ++A G  F      I            
Sbjct: 104 NEKYVTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAI--- 160

Query: 617 NHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           +HA+ IVGYG E   D     YWIVKNSW + WGE+
Sbjct: 161 DHAVTIVGYGTEGGID-----YWIVKNSWDTTWGEE 191

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

 Score = 73.5 bits (179), Expect = 2e-15
 Identities = 23/53 (43%), Positives = 30/53 (56%)

Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHH 200
           LP   DWR+ G +  +K QG+C  CWAFSA+  VE ++ I    L  LS Q  
Sbjct: 1   LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQEL 53

>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Falcipain 2
species: Plasmodium falciparum [TaxId: 5833]

 Score =  130 bits (328), Expect = 5e-35
 Identities = 62/200 (31%), Positives = 97/200 (48%), Gaps = 28/200 (14%)

Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
             A+DWR    ++ VK+Q  C  CWAFS++G VE+ +AI+ N L  LS Q+LVDC   N 
Sbjct: 19  HAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNY 78

Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEE 416
           GCNGG +++A + +I+ GG+  D  YPY +       +    E + +K           +
Sbjct: 79  GCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIK-----NYLSVPD 133

Query: 417 EEMKKWVATRGPLSVGMNANGLF-YYSGGVID----------------------LNQRLY 453
            ++K+ +   GP+S+ +  +  F +Y  G+ D                            
Sbjct: 134 NKLKEALRFLGPISISVAVSDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKK 193

Query: 454 GTSIPYWIVKNSWGSDWGEK 473
           G    Y+I+KNSWG  WGE+
Sbjct: 194 GEKHYYYIIKNSWGQQWGER 213

>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Falcipain 2
species: Plasmodium falciparum [TaxId: 5833]

 Score = 80.4 bits (197), Expect = 1e-17
 Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 15/162 (9%)

Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEE 556
           KL  L+ ++LVDC   N GCNGG +++A + +I+ GG+  D  YPY +       +    
Sbjct: 61  KLITLSEQELVDCSFKNYGCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCT 120

Query: 557 EGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLF-YYSGGVIDLNQRLCNPKA 615
           E + +K           + ++K+ +   GP+S+ +  +  F +Y  G+ D          
Sbjct: 121 EKYGIK-----NYLSVPDNKLKEALRFLGPISISVAVSDDFAFYKEGIFDG----ECGDQ 171

Query: 616 QNHALIIVGYGEEE-----KKDGTSIPYWIVKNSWGSDWGEK 652
            NHA+++VG+G +E      K G    Y+I+KNSWG  WGE+
Sbjct: 172 LNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGER 213

>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Falcipain 2
species: Plasmodium falciparum [TaxId: 5833]

 Score = 76.9 bits (188), Expect = 2e-16
 Identities = 23/51 (45%), Positives = 32/51 (62%)

Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
             A+DWR    ++ VK+Q  C  CWAFS++G VE+ +AI+ N L  LS Q 
Sbjct: 19  HAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQE 69

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (329), Expect = 5e-35
 Identities = 50/228 (21%), Positives = 78/228 (34%), Gaps = 50/228 (21%)

Query: 296 LPEAFDWRAE----GVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLT--ELSVQQLV 349
           LP +FD R +      I ++++QG C  CWAF AV  +     I  N+    E+S + L+
Sbjct: 2   LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61

Query: 350 DCDMS--NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERG--------------- 392
            C  S    GCNGG   +A  +    G V       +                       
Sbjct: 62  TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 121

Query: 393 -------CLVGEEEGFKVKVKEYSRIPYGE------EEEMKKWVATRGPLSVGMNANGLF 439
                  C    E G+    K+     Y        E+++   +   GP+    +    F
Sbjct: 122 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDF 181

Query: 440 YYSGGVIDLNQRL------------YGTS--IPYWIVKNSWGSDWGEK 473
                 +  +               +G     PYW+V NSW +DWG+ 
Sbjct: 182 LLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDN 229

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.1 bits (217), Expect = 5e-20
 Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 37/183 (20%)

Query: 500 RLATEKLVDCDMS--NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERG------- 550
            ++ E L+ C  S    GCNGG   +A  +    G V       +               
Sbjct: 54  EVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHV 113

Query: 551 ---------------CLVGEEEGFKVKVKEYSRIPYGE------EEEMKKWVATRGPLSV 589
                          C    E G+    K+     Y        E+++   +   GP+  
Sbjct: 114 NGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEG 173

Query: 590 GMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDW 649
             +    F        + Q +       HA+ I+G+G E        PYW+V NSW +DW
Sbjct: 174 AFSVYSDFLLYK--SGVYQHVTGEMMGGHAIRILGWGVENGT-----PYWLVANSWNTDW 226

Query: 650 GEK 652
           G+ 
Sbjct: 227 GDN 229

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (166), Expect = 2e-13
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 148 LPEAFDWRAE----GVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHH 200
           LP +FD R +      I ++++QG C  CWAF AV  +     I  N    + V   
Sbjct: 2   LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAE 58

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score =  129 bits (324), Expect = 9e-35
 Identities = 70/191 (36%), Positives = 92/191 (48%), Gaps = 18/191 (9%)

Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P++ DWRA+G ++ VK QG C  CWAFS +  VE ++ I   +L ELS Q+LVDCD  + 
Sbjct: 2   PQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61

Query: 357 GCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEE 416
           GC GG    +LQY+ +NG   S            R     ++ G KVK+  Y R+P   E
Sbjct: 62  GCKGGYQTTSLQYVANNGVHTSKVYPYQAKQYKCRAT---DKPGPKVKITGYKRVPSNCE 118

Query: 417 EEMKKWVATRGPLSVGMNANGLF--YYSGGVIDLNQRLYGT------------SIPYWIV 462
                 +A   PLSV + A G     Y  GV D                       Y I+
Sbjct: 119 TSFLGALAN-QPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTSDGKNYIII 177

Query: 463 KNSWGSDWGEK 473
           KNSWG +WGEK
Sbjct: 178 KNSWGPNWGEK 188

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 76.5 bits (187), Expect = 2e-16
 Identities = 25/52 (48%), Positives = 33/52 (63%)

Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHH 200
           P++ DWRA+G ++ VK QG C  CWAFS +  VE ++ I   NL ELS Q  
Sbjct: 2   PQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQEL 53

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 75.4 bits (184), Expect = 5e-16
 Identities = 54/158 (34%), Positives = 72/158 (45%), Gaps = 15/158 (9%)

Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEE 556
            L  L+ ++LVDCD  + GC GG    +LQY+ +NG   S            R     ++
Sbjct: 44  NLLELSEQELVDCDKHSYGCKGGYQTTSLQYVANNGVHTSKVYPYQAKQYKCRAT---DK 100

Query: 557 EGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLF--YYSGGVIDLNQRLCNPK 614
            G KVK+  Y R+P   E      +A   PLSV + A G     Y  GV           
Sbjct: 101 PGPKVKITGYKRVPSNCETSFLGALAN-QPLSVLVEAGGKPFQLYKSGVF----DGPCGT 155

Query: 615 AQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
             +HA+  VGYG  + K      Y I+KNSWG +WGEK
Sbjct: 156 KLDHAVTAVGYGTSDGK-----NYIIIKNSWGPNWGEK 188

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

 Score =  128 bits (323), Expect = 1e-34
 Identities = 66/193 (34%), Positives = 94/193 (48%), Gaps = 17/193 (8%)

Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS- 354
           +P + DWR +G ++ VK+QG+C  CWAFS +  VE ++ I+ N L  LS Q+LVDCD   
Sbjct: 2   VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61

Query: 355 NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYG 414
           N GCNGG MD A ++I   GG+ ++  YPY+A +        +E    V +  +  +P  
Sbjct: 62  NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDV--SKENAPAVSIDGHENVPEN 119

Query: 415 EEEEMKKWVATRGPLSVGMNANGLF--YYSGGVIDLNQRLYGTSI------------PYW 460
           +E  + K VA +            F  Y  G             +             YW
Sbjct: 120 DENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKYW 179

Query: 461 IVKNSWGSDWGEK 473
            VKNSWG +WGEK
Sbjct: 180 TVKNSWGPEWGEK 192

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

 Score = 75.8 bits (185), Expect = 4e-16
 Identities = 23/53 (43%), Positives = 34/53 (64%)

Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHH 200
           +P + DWR +G ++ VK+QG+C  CWAFS +  VE ++ I+ N L  LS Q  
Sbjct: 2   VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQEL 54

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

 Score = 75.4 bits (184), Expect = 5e-16
 Identities = 49/149 (32%), Positives = 67/149 (44%), Gaps = 12/149 (8%)

Query: 506 LVDCDMSNGG-CNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVK 564
           LVDCD      CNGG MD A ++I   GG+ ++  YPY+A +        +E    V + 
Sbjct: 54  LVDCDTDQNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDV--SKENAPAVSID 111

Query: 565 EYSRIPYGEEEEMKKWVATRGPLSVGMNANGLF-YYSGGVIDLNQRLCNPKAQNHALIIV 623
            +  +P  +E  + K VA +            F +YS GV             +H + IV
Sbjct: 112 GHENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTG----SCGTELDHGVAIV 167

Query: 624 GYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           GYG           YW VKNSWG +WGEK
Sbjct: 168 GYGTTIDGT----KYWTVKNSWGPEWGEK 192

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

 Score =  126 bits (316), Expect = 1e-33
 Identities = 61/191 (31%), Positives = 85/191 (44%), Gaps = 16/191 (8%)

Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           LPE  DWR +G ++ V+ QG C  CWAFSAV  VE ++ I+   L ELS Q+LVDC+  +
Sbjct: 1   LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60

Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGE 415
            GC GG         +   G+     YPYKA +        +  G  VK     R+    
Sbjct: 61  HGCKGG-YPPYALEYVAKNGIHLRSKYPYKAKQGTCRA--KQVGGPIVKTSGVGRVQPNN 117

Query: 416 EEEMKKWVATRGPLSVGMNANGLFY-YSGGVIDLNQRLYGT------------SIPYWIV 462
           E  +   +A +    V  +    F  Y GG+ +                       Y ++
Sbjct: 118 EGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGKGYILI 177

Query: 463 KNSWGSDWGEK 473
           KNSWG+ WGEK
Sbjct: 178 KNSWGTAWGEK 188

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 79.3 bits (194), Expect = 2e-17
 Identities = 26/52 (50%), Positives = 33/52 (63%)

Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
           LPE  DWR +G ++ V+ QG C  CWAFSAV  VE ++ I+   L ELS Q 
Sbjct: 1   LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQE 52

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 69.3 bits (168), Expect = 7e-14
 Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 13/157 (8%)

Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEE 556
           KL  L+ ++LVDC+  + GC GG         +   G+     YPYKA +        + 
Sbjct: 44  KLVELSEQELVDCERRSHGCKGG-YPPYALEYVAKNGIHLRSKYPYKAKQGTCRA--KQV 100

Query: 557 EGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFY-YSGGVIDLNQRLCNPKA 615
            G  VK     R+    E  +   +A +    V  +    F  Y GG+ +          
Sbjct: 101 GGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEG----PCGTK 156

Query: 616 QNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
            +HA+  VGYG+   K      Y ++KNSWG+ WGEK
Sbjct: 157 VDHAVTAVGYGKSGGK-----GYILIKNSWGTAWGEK 188

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  125 bits (315), Expect = 1e-33
 Identities = 67/191 (35%), Positives = 104/191 (54%), Gaps = 15/191 (7%)

Query: 297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNG 356
           P A DWRA G ++ VK+QG+C  CWAFSA+G VE    + G+ LT LS Q LV CD ++ 
Sbjct: 2   PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61

Query: 357 GCNGGRMDDALQY--IIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYG 414
           GC+GG M++A ++    +NG V ++ +YPY + E                +  +  +P  
Sbjct: 62  GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121

Query: 415 EEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLYG------------TSIPYWIV 462
            E ++  W+A  GP++V ++A+    Y+GGV+                     ++PYWI+
Sbjct: 122 -EAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVGYNDSAAVPYWII 180

Query: 463 KNSWGSDWGEK 473
           KNSW + WGE+
Sbjct: 181 KNSWTTQWGEE 191

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 70.4 bits (171), Expect = 2e-14
 Identities = 22/43 (51%), Positives = 29/43 (67%)

Query: 149 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNN 191
           P A DWRA G ++ VK+QG+C  CWAFSA+G VE    + G+ 
Sbjct: 2   PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHP 44

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 70.1 bits (170), Expect = 3e-14
 Identities = 45/149 (30%), Positives = 79/149 (53%), Gaps = 12/149 (8%)

Query: 506 LVDCDMSNGGCNGGRMDDALQY--IIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKV 563
           LV CD ++ GC+GG M++A ++    +NG V ++ +YPY + E                +
Sbjct: 53  LVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATI 112

Query: 564 KEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIV 623
             +  +P  E + +  W+A  GP++V ++A+    Y+GGV+      C  +  +H +++V
Sbjct: 113 TGHVELPQDEAQ-IAAWLAVNGPVAVAVDASSWMTYTGGVMTS----CVSEQLDHGVLLV 167

Query: 624 GYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           GY +         PYWI+KNSW + WGE+
Sbjct: 168 GYNDSAAV-----PYWIIKNSWTTQWGEE 191

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score =  120 bits (301), Expect = 1e-31
 Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 14/188 (7%)

Query: 296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSN 355
           +PE  DWR +G ++ VK QG C  CWAFSAV  +E +  I+  +L E S Q+L+DCD  +
Sbjct: 1   IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60

Query: 356 GGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGE 415
            GCNGG    ALQ +    G+     YPY+  +         E+G      +  R     
Sbjct: 61  YGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQ---RYCRSREKGPYAAKTDGVRQVQPY 116

Query: 416 EEEMKKWVATRGPLSVGMNANGLFYYS---GGVIDLNQRLYGTSI-------PYWIVKNS 465
            E    +     P+SV + A G  +     G  +         ++        Y ++KNS
Sbjct: 117 NEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPNYILIKNS 176

Query: 466 WGSDWGEK 473
           WG+ WGE 
Sbjct: 177 WGTGWGEN 184

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 78.6 bits (192), Expect = 4e-17
 Identities = 25/53 (47%), Positives = 32/53 (60%)

Query: 148 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHH 200
           +PE  DWR +G ++ VK QG C  CWAFSAV  +E +  I+  NL E S Q  
Sbjct: 1   IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQEL 53

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 58.5 bits (140), Expect = 2e-10
 Identities = 41/153 (26%), Positives = 61/153 (39%), Gaps = 15/153 (9%)

Query: 500 RLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGF 559
             + ++L+DCD  + GCNGG    ALQ +   G +     YPY+  +         E+G 
Sbjct: 47  EYSEQELLDCDRRSYGCNGGYPWSALQLVAQYG-IHYRNTYPYEGVQ---RYCRSREKGP 102

Query: 560 KVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHA 619
                +  R      E    +     P+SV + A G  +             N    +HA
Sbjct: 103 YAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNK--VDHA 160

Query: 620 LIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           +  VGYG           Y ++KNSWG+ WGE 
Sbjct: 161 VAAVGYGPN---------YILIKNSWGTGWGEN 184

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (307), Expect = 2e-31
 Identities = 84/302 (27%), Positives = 130/302 (43%), Gaps = 50/302 (16%)

Query: 197 VQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSG---TAVFGVNKFFDLSESDLQQL 253
              H+++Y   E+  RR   +  N++  E +  E      +    +N F D++  + +Q+
Sbjct: 16  KAMHNRLYGMNEEGWRR-AVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQV 74

Query: 254 TGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKE 313
                                    + + R  +        + P + DWR +G ++ VK 
Sbjct: 75  MN--------------------GFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKN 114

Query: 314 QGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS--NGGCNGGRMDDALQYII 371
           QG+C  CWAFSA G +E     +   L  LS Q LVDC     N GCNGG MD A QY+ 
Sbjct: 115 QGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQ 174

Query: 372 DNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSV 431
           DNGG+ S+++YPY+A+E            + V           +E+ + K VAT GP+SV
Sbjct: 175 DNGGLDSEESYPYEATEESCKY----NPKYSVANDAGFVDIPKQEKALMKAVATVGPISV 230

Query: 432 GMNANGLFYY----------SGGVIDLNQRL----YGTS------IPYWIVKNSWGSDWG 471
            ++A    +                D++  +    YG          YW+VKNSWG +WG
Sbjct: 231 AIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWG 290

Query: 472 EK 473
             
Sbjct: 291 MG 292

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (240), Expect = 1e-22
 Identities = 54/154 (35%), Positives = 82/154 (53%), Gaps = 7/154 (4%)

Query: 501 LATEKLVDCDMS--NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEG 558
           L+ + LVDC     N GCNGG MD A QY+ DNGG+ S+++YPY+A+E            
Sbjct: 144 LSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKY----NPK 199

Query: 559 FKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNH 618
           + V           +E+ + K VAT GP+SV ++A    +         +  C+ +  +H
Sbjct: 200 YSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDH 259

Query: 619 ALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
            +++VGYG E   +  +  YW+VKNSWG +WG  
Sbjct: 260 GVLVVGYGFE-STESDNNKYWLVKNSWGEEWGMG 292

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.6 bits (161), Expect = 2e-12
 Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 24/161 (14%)

Query: 43  TRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSG---TAVFEVNKFFDLSD 99
            ++  +   H+++Y   E+  RR   +  N++  E + +E      +    +N F D++ 
Sbjct: 10  AQWTKWKAMHNRLYGMNEEGWRR-AVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTS 68

Query: 100 SDLQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGV 159
            + +Q+                         + + R  +        + P + DWR +G 
Sbjct: 69  EEFRQVMN--------------------GFQNRKPRKGKVFQEPLFYEAPRSVDWREKGY 108

Query: 160 ISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHH 200
           ++ VK QG+C  CWAFSA G +E     +   L  LS Q+ 
Sbjct: 109 VTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNL 149

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

 Score =  116 bits (290), Expect = 3e-29
 Identities = 58/291 (19%), Positives = 105/291 (36%), Gaps = 37/291 (12%)

Query: 197 VQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQLTGL 256
            +  +K Y++ ED     +NF+ +V+  +             +N   DLS  + +    +
Sbjct: 9   KKAFNKSYATFEDEEAARKNFLESVKYVQSNGG--------AINHLSDLSLDEFKNRFLM 60

Query: 257 NLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGK 316
           + ++        L+  F  N           N+     + P   D R    ++ ++ QG 
Sbjct: 61  SAEA-----FEHLKTQFDLNAE--------TNACSINGNAPAEIDLRQMRTVTPIRMQGG 107

Query: 317 CACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGV 376
           C   WAFS V   E+ +    +   +L+ Q+LVDC   +G              I + GV
Sbjct: 108 CGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCASQHGCHGDTIPRG--IEYIQHNGV 165

Query: 377 VSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNAN 436
           V +  Y Y A E        +  G     + Y        E + +  +    +    + +
Sbjct: 166 VQESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLD 225

Query: 437 GLFYYSGGVIDLNQRL------------YGTS--IPYWIVKNSWGSDWGEK 473
              +Y G  I                  Y  +  + YWIV+NSW ++WG+ 
Sbjct: 226 AFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDN 276

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

 Score = 78.2 bits (191), Expect = 2e-16
 Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 21/158 (13%)

Query: 42  VTRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSGTAVFEVNKFFDLSDSD 101
           +  F  + +  +K Y++ ED     +NF+ +V+  +             +N   DLS  +
Sbjct: 2   IKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGGA--------INHLSDLSLDE 53

Query: 102 LQQLTGLNLDSTLEDIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVIS 161
            +    ++ ++        L+  F  N           N+     + P   D R    ++
Sbjct: 54  FKNRFLMSAEA-----FEHLKTQFDLNAE--------TNACSINGNAPAEIDLRQMRTVT 100

Query: 162 KVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
            ++ QG C   WAFS V   E+ +    +   +L+ Q 
Sbjct: 101 PIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQE 138

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

 Score = 73.5 bits (179), Expect = 7e-15
 Identities = 39/156 (25%), Positives = 61/156 (39%), Gaps = 9/156 (5%)

Query: 497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEE 556
           +   LA ++LVDC   +G              I + GVV +  Y Y A E        + 
Sbjct: 130 QSLDLAEQELVDCASQHGCHGDTIPRG--IEYIQHNGVVQESYYRYVAREQSCRRPNAQR 187

Query: 557 EGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQ 616
            G     + Y        E + +  +    +    + +   +Y G  I   QR    +  
Sbjct: 188 FGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTII--QRDNGYQPN 245

Query: 617 NHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
            HA+ IVGY   +  D     YWIV+NSW ++WG+ 
Sbjct: 246 YHAVNIVGYSNAQGVD-----YWIVRNSWDTNWGDN 276

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 8e-25
 Identities = 54/213 (25%), Positives = 82/213 (38%), Gaps = 35/213 (16%)

Query: 294 DDLPEAFDWRAEGV---ISKVKEQGK---CACCWAFSAVGVVEAMHAIQGNSL---TELS 344
            DLP+++DWR        S  + Q     C  CWA ++   +     I+       T LS
Sbjct: 32  ADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLS 91

Query: 345 VQQLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESE----RGCLVGEEEG 400
           VQ ++DC   N G   G  D ++       G+  +    Y+A + E      C    E  
Sbjct: 92  VQNVIDCG--NAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFK 149

Query: 401 FKVKVKEYSRIPYGE------EEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRL-- 452
               ++ Y+    G+       E+M   +   GP+S G+ A        G I    +   
Sbjct: 150 ECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTT 209

Query: 453 ----------YGTS--IPYWIVKNSWGSDWGEK 473
                     +G S    YWIV+NSWG  WGE+
Sbjct: 210 YINHVVSVAGWGISDGTEYWIVRNSWGEPWGER 242

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.4 bits (176), Expect = 1e-14
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 560 KVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHA 619
             +V +Y  +     E+M   +   GP+S G+ A        G   +     +    NH 
Sbjct: 159 LWRVGDYGSLS--GREKMMAEIYANGPISCGIMATERLANYTG--GIYAEYQDTTYINHV 214

Query: 620 LIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
           + + G+G  +  +     YWIV+NSWG  WGE+
Sbjct: 215 VSVAGWGISDGTE-----YWIVRNSWGEPWGER 242

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (141), Expect = 4e-10
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 6/65 (9%)

Query: 146 DDLPEAFDWRAEGV---ISKVKEQGK---CACCWAFSAVGVVEAMHAIQGNNLTELSVQH 199
            DLP+++DWR        S  + Q     C  CWA ++   +     I+       ++  
Sbjct: 32  ADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLS 91

Query: 200 HDKVY 204
              V 
Sbjct: 92  VQNVI 96

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} Length = 458

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

 Score = 47.3 bits (112), Expect = 4e-06
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 590 GMNANGLFYYSGGVIDLN----QRLCNPKAQ-NHALIIVGYGEEEKKDGTSIPYWIVKNS 644
           G+    L+ Y     +L      R+   ++   HA++I G   +E         + V+NS
Sbjct: 341 GVMDIELWNYPAIGYNLPQQKASRIRYHESLMTHAMLITGCHVDET--SKLPLRYRVENS 398

Query: 645 WGSDWGEK 652
           WG D G+ 
Sbjct: 399 WGKDSGKD 406

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 453

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (110), Expect = 7e-06
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 617 NHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK 652
            HA+      E++ +DG     W V+NSWG D G K
Sbjct: 370 THAMTFTAVSEKDDQDGAFT-KWRVENSWGEDHGHK 404

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	655
d1cs8a_	316	(Pro)cathepsin L {Human (Homo sapiens) [TaxId: 960	100.0
d1xkga1	302	Major mite fecal allergen der p 1 {House-dust mite	100.0
d1ppoa_	216	Caricain (protease omega) {Papaya (Carica papaya)	100.0
d2r6na1	215	(Pro)cathepsin K {Human (Homo sapiens) [TaxId: 960	100.0
d1yala_	218	Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}	100.0
d1fh0a_	221	(Pro)cathepsin V {Human (Homo sapiens) [TaxId: 960	100.0
d2oula1	241	Falcipain 2 {Plasmodium falciparum [TaxId: 5833]}	100.0
d1cqda_	216	Proline-specific cysteine protease {Ginger rhizome	100.0
g8pch.1	228	Cathepsin H {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1m6da_	214	Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2h7ja1	217	(Pro)cathepsin S {Human (Homo sapiens) [TaxId: 960	100.0
d1khqa_	212	Papain {Papaya (Carica papaya) [TaxId: 3649]}	100.0
d1o0ea_	208	Ervatamin C {East indian rosebay (Ervatamia corona	100.0
g1k3b.1	233	Cathepsin C (dipeptidyl peptidase I), catalytic do	100.0
d1me4a_	215	Cruzain {Trypanosoma cruzi [TaxId: 5693]}	100.0
d1aeca_	218	Actinidin {Chinese gooseberry or kiwifruit (Actini	100.0
d1s4va_	224	Vignain (bean endopeptidase) {Castor bean (Ricinus	100.0
d1iwda_	215	Ervatamin B {Adam's apple (Ervatamia coronaria) [T	100.0
d1deua_	275	(Pro)cathepsin X {Human (Homo sapiens) [TaxId: 960	100.0
d1gmya_	254	(Pro)cathepsin B {Human (Homo sapiens) [TaxId: 960	100.0
d1cs8a_	316	(Pro)cathepsin L {Human (Homo sapiens) [TaxId: 960	99.97
d1xkga1	302	Major mite fecal allergen der p 1 {House-dust mite	99.96
d1m6da_	214	Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1deua_	275	(Pro)cathepsin X {Human (Homo sapiens) [TaxId: 960	99.94
g8pch.1	228	Cathepsin H {Pig (Sus scrofa) [TaxId: 9823]}	99.94
d2r6na1	215	(Pro)cathepsin K {Human (Homo sapiens) [TaxId: 960	99.93
d1ppoa_	216	Caricain (protease omega) {Papaya (Carica papaya)	99.93
d2oula1	241	Falcipain 2 {Plasmodium falciparum [TaxId: 5833]}	99.93
d1yala_	218	Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}	99.93
g1k3b.1	233	Cathepsin C (dipeptidyl peptidase I), catalytic do	99.93
d1cqda_	216	Proline-specific cysteine protease {Ginger rhizome	99.92
d1me4a_	215	Cruzain {Trypanosoma cruzi [TaxId: 5693]}	99.92
d2h7ja1	217	(Pro)cathepsin S {Human (Homo sapiens) [TaxId: 960	99.92
d1fh0a_	221	(Pro)cathepsin V {Human (Homo sapiens) [TaxId: 960	99.91
d1gmya_	254	(Pro)cathepsin B {Human (Homo sapiens) [TaxId: 960	99.91
d1aeca_	218	Actinidin {Chinese gooseberry or kiwifruit (Actini	99.9
d1s4va_	224	Vignain (bean endopeptidase) {Castor bean (Ricinus	99.9
d1o0ea_	208	Ervatamin C {East indian rosebay (Ervatamia corona	99.9
d1iwda_	215	Ervatamin B {Adam's apple (Ervatamia coronaria) [T	99.89
d1khqa_	212	Papain {Papaya (Carica papaya) [TaxId: 3649]}	99.89
d3gcba_	458	Bleomycin hydrolase {Baker's yeast (Saccharomyces	99.76
d2cb5a_	453	Bleomycin hydrolase {Human (Homo sapiens) [TaxId:	99.68
d3gcba_	458	Bleomycin hydrolase {Baker's yeast (Saccharomyces	98.1
d2cb5a_	453	Bleomycin hydrolase {Human (Homo sapiens) [TaxId:	97.62

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-60  Score=497.82  Aligned_cols=279  Identities=32%  Similarity=0.568  Sum_probs=235.0

Q ss_pred             chhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHhcC---CCCceeeeeCcCCCCChHHHHh-hcCCCCCCcccccC
Q psy11694        191 NLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSE---DSGTAVFGVNKFFDLSESDLQQ-LTGLNLDSTLEDIQ  266 (655)
Q Consensus       191 ~l~~~~~q~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~---~~~~~~~g~N~FsDlt~eEf~~-~~~~~~~~~~~~~~  266 (655)
                      ..|+.|+++|+|.|.+. |+..|++||.+|++.|++||++   ++.+|++|+|+|+|||.+||.+ +++.......    
T Consensus        10 ~~F~~f~~~~~K~Y~~~-ee~~R~~iF~~N~~~I~~~N~~~~~~~~~~~~g~N~fsDlt~eEf~~~~~~~~~~~~~----   84 (316)
T d1cs8a_          10 AQWTKWKAMHNRLYGMN-EEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPR----   84 (316)
T ss_dssp             HHHHHHHHHTTCCCCTT-HHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCTTTTCCHHHHHHHHCCBCCCCCS----
T ss_pred             HHHHHHHHHhCCcCCCH-HHHHHHHHHHHHHHHHHHHHhHhhcCCCceEEeceeccccCcHHHHhhhccccccccc----
Confidence            35999999999999875 5689999999999999999985   5679999999999999999999 5543222100    


Q ss_pred             CCCCCCCCCCCcchhhhhhhcccCCCCCCCCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHH
Q psy11694        267 PSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQ  346 (655)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q  346 (655)
                          . ...         .   ......+||++||||++|+|+||||||.||||||||+++++|++++++++..+.||+|
T Consensus        85 ----~-~~~---------~---~~~~~~~lP~s~Dwr~~g~vtpVkdQG~CGsCwAfa~~~~~E~~~~i~~~~~~~lS~Q  147 (316)
T d1cs8a_          85 ----K-GKV---------F---QEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQ  147 (316)
T ss_dssp             ----C-CEE---------C---CCCTTCCCCSCEEGGGGTCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHH
T ss_pred             ----c-Ccc---------c---cCcccccCCCceECCcCCcccccccCCCCceeeehhhhHHHHHHHHhhcCCcccchhh
Confidence                0 000         0   0011357999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccC--CCCCCCCCcHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHh
Q psy11694        347 QLVDCDM--SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVA  424 (655)
Q Consensus       347 ~l~dC~~--~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~  424 (655)
                      +|+||+.  .+.||.||++..|++|+..+++++.|..|||.+...  .|...... ....+..+..+.. +++.|+++|+
T Consensus       148 ~lvdC~~~~~~~~c~gg~~~~a~~y~~~~g~~~~e~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~l~  223 (316)
T d1cs8a_         148 NLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE--SCKYNPKY-SVANDAGFVDIPK-QEKALMKAVA  223 (316)
T ss_dssp             HHHHHCGGGTCCGGGCBCHHHHHHHHHHHTCEEBTTTSCCCSSCC--CCCCCGGG-EEECCCCEEECCS-CHHHHHHHHH
T ss_pred             hhhhccccccCCCCCCCchHHHHHHHHhcCccccccccccccccc--cccccccc-ccccccccccccC-cHHHHHHHHH
Confidence            9999984  367899999999999999997788999999998877  66654443 5556666666655 8899999999


Q ss_pred             hCCCeEEEEEcCC--cccccccEEe--------CCceE----EcC------CccEEEEecCCCCccCCCceEEecccCCc
Q psy11694        425 TRGPLSVGMNANG--LFYYSGGVID--------LNQRL----YGT------SIPYWIVKNSWGSDWGEKVEDKVGSSGNR  484 (655)
Q Consensus       425 ~~gPV~v~i~~~~--~~~Y~~Gi~~--------~~Hav----yg~------g~~yWivkNSWG~~WGe~Gy~~i~~~~~~  484 (655)
                      .+|||+|+|++..  |.+|++|||.        ++|||    ||.      +.+|||||||||++|||+|||||+|+...
T Consensus       224 ~~gpv~v~i~~~~~~f~~y~~Gi~~~~~c~~~~~nHaV~iVGyG~d~~~~~g~~YWIikNSWG~~WGe~GY~ri~r~~~n  303 (316)
T d1cs8a_         224 TVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRN  303 (316)
T ss_dssp             HHCCEEEEECCCSHHHHTEEEEEECCTTCCSSCCCEEEEEEEEEEECCSSCCEEEEEEECSBCTTSTBTTEEEEECSSSS
T ss_pred             HhCCeEEEEEeccchhccccCCcccCCCCCCCcCCEEEEEEEEcccccCCCCCeEEEEEeCCCCCcccCCEEEEeeCCCC
Confidence            9999999999875  8899999996        79999    762      67999999999999999999999998766


Q ss_pred             cccccccCCcc
Q psy11694        485 TRDLELTGVLP  495 (655)
Q Consensus       485 ~~~~~~~gv~p  495 (655)
                      .|++......|
T Consensus       304 ~CGI~~~~~yP  314 (316)
T d1cs8a_         304 HCGIASAASYP  314 (316)
T ss_dssp             GGGTTTSCEEE
T ss_pred             cCccCCeeeee
Confidence            78887776665

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

Probab=100.00  E-value=1e-58  Score=481.45  Aligned_cols=276  Identities=23%  Similarity=0.422  Sum_probs=225.3

Q ss_pred             chhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeCcCCCCChHHHHh-hcCCCCCCcccccCCCC
Q psy11694        191 NLTELSVQHHDKVYSSVEDLLRRHENFVTNVEKAEDYQSEDSGTAVFGVNKFFDLSESDLQQ-LTGLNLDSTLEDIQPSL  269 (655)
Q Consensus       191 ~l~~~~~q~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~~~~~g~N~FsDlt~eEf~~-~~~~~~~~~~~~~~~~~  269 (655)
                      ++|+.|+++|+|.|.+.+|+..|+.+|++|++.|++||.        |+|+|+|||.|||.+ +++.....  ....+..
T Consensus         3 ~~f~~f~~~~~K~Y~~~~e~~~r~~if~~N~~~I~~~n~--------~~N~fsDlt~eEf~~~~~~~~~~~--~~~~~~~   72 (302)
T d1xkga1           3 KTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGG--------AINHLSDLSLDEFKNRFLMSAEAF--EHLKTQF   72 (302)
T ss_dssp             CSHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHCC--------CCCTTTTSCHHHHHHHHSBCHHHH--HHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhcc--------CCCcCCCCCHHHHHHHhcCCCccc--ccccccC
Confidence            579999999999999999999999999999999999995        799999999999988 65432110  0000000


Q ss_pred             CCCCCCCCcchhhhhhhcccCCCCCCCCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHH
Q psy11694        270 QAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLV  349 (655)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~  349 (655)
                      ...            ..........++|++||||++|+||||||||.||||||||++++||++++|+++..+.||+|+|+
T Consensus        73 ~~~------------~~~~~~~~~~~~P~~~DwR~~g~vtpVkdQG~CGsCwAfa~~~~lE~~~~i~~~~~~~lS~q~lv  140 (302)
T d1xkga1          73 DLN------------AETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELV  140 (302)
T ss_dssp             C-----------------CBCCCCSCCCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHH
T ss_pred             CCC------------ccccccccCCCCCcceeccccCccccceeccccceehhhhhHHhHHHHHHHhcCCcccchhHHHH
Confidence            000            00001112457999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCCCCCCCCCcHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhC-CC
Q psy11694        350 DCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATR-GP  428 (655)
Q Consensus       350 dC~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~-gP  428 (655)
                      ||+. +.||.||++..|++|+.+. ||++|++|||.+..+  .|.....  ..+.+.++..+...+++.|+++|+.. +|
T Consensus       141 dC~~-~~~C~gG~~~~a~~~~~~~-Gi~~e~~yPY~~~~~--~C~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  214 (302)
T d1xkga1         141 DCAS-QHGCHGDTIPRGIEYIQHN-GVVQESYYRYVAREQ--SCRRPNA--QRFGISNYCQIYPPNANKIREALAQTHSA  214 (302)
T ss_dssp             HHTC-SSTTBCCCHHHHHHHHHHH-CEEBGGGSCCCSSCC--CCCCCSS--CEECCSEEEECCSCCHHHHHHHHHHHCCC
T ss_pred             hccc-cCccCCCccchhhhhhccC-cccchhhcccccccc--ccccccc--ccceeeeeeeecCchHHHHHHhhhhcccc
Confidence            9984 5799999999999999988 999999999999888  8876554  46778889988888999999999874 45


Q ss_pred             eEEEEEcCC---cccccccEEe--------CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCCcccccccc
Q psy11694        429 LSVGMNANG---LFYYSGGVID--------LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELT  491 (655)
Q Consensus       429 V~v~i~~~~---~~~Y~~Gi~~--------~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~~~  491 (655)
                      +++.+.+..   |++|.+||+.        .+|||    ||+  |.+|||||||||++|||+|||||+|+.| .|++...
T Consensus       215 ~~~~~~~~~~~~~~~y~~gi~~~~~~~~~~~~HaV~iVGyg~~~g~~YWivkNSWG~~WGe~GY~~i~~~~n-~cgi~~~  293 (302)
T d1xkga1         215 IAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANID-LMMIEEY  293 (302)
T ss_dssp             EEEEEEESCHHHHHTCCSSSCBCCCCSSCCEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSC-GGGTTTC
T ss_pred             cceeecccccchhhccccceeecCCCCCCcCCEEEEEEEEeccCCeEEEEEEcCCCCchhcCCEEEEECCCC-eeccCCC
Confidence            566565543   7788998885        46999    776  7899999999999999999999999755 4666665


Q ss_pred             CCcc
Q psy11694        492 GVLP  495 (655)
Q Consensus       492 gv~p  495 (655)
                      .+.|
T Consensus       294 ~~~~  297 (302)
T d1xkga1         294 PYVV  297 (302)
T ss_dssp             CEEE
T ss_pred             cEEE
Confidence            5544

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=100.00  E-value=2.6e-45  Score=362.49  Aligned_cols=196  Identities=37%  Similarity=0.727  Sum_probs=172.1

Q ss_pred             CCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHHcCC
Q psy11694        296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGG  375 (655)
Q Consensus       296 lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~G  375 (655)
                      ||++||||++|+|+||||||.||||||||++++||++++++++..+.||+|+|++|.....+|.||++..+++++.+. |
T Consensus         1 LP~~~Dwr~~~~vtpV~dQg~cGsCwAfa~~~~~e~~~~~~~~~~~~lS~q~l~~~~~~~~~~~G~~~~~~~~~~~~~-G   79 (216)
T d1ppoa_           1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKN-G   79 (216)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCSSSCTTBCCCHHHHHHHHHHH-C
T ss_pred             CCCcccCCcCCCCCCcccCCcCchHHHHHHHHHHHHHHHHHhCCCCCccHHHHhhhhhccCccccccccccccccccc-C
Confidence            799999999999999999999999999999999999999999999999999999999888999999999999999988 9


Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC--cccccccEEe------
Q psy11694        376 VVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVID------  447 (655)
Q Consensus       376 i~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~--~~~Y~~Gi~~------  447 (655)
                      +++|++|||.....  .|...........+..+..+....++.|+++|+ +|||++++.+..  |+.|++|+|.      
T Consensus        80 ~~~e~~yPy~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~gpv~~~~~~~~~~~~~y~~g~~~~~~~~~  156 (216)
T d1ppoa_          80 IHLRSKYPYKAKQG--TCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIA-KQPVSVVVESKGRPFQLYKGGIFEGPCGTK  156 (216)
T ss_dssp             BCBTTTSCCCSSCC--CCCGGGCCSCCBCCCEEEECCSSCHHHHHHHHH-HSCEEEEECCCSHHHHHCCSSEECCSCCSC
T ss_pred             ccccccCCcccccc--ccccccccccceeeccceeecccHHHHHHHHHh-hCCCceeeeeccccceecCCcccccccccc
Confidence            99999999998877  676554443455566667777777888998887 789999999876  7789999997      


Q ss_pred             CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCCcc---ccccccCCcc
Q psy11694        448 LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNRT---RDLELTGVLP  495 (655)
Q Consensus       448 ~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~---~~~~~~gv~p  495 (655)
                      ++|||    ||+  +.+|||||||||++||++|||||+|+.+..   |++....+.|
T Consensus       157 ~~Hav~iVGyg~~~~~~ywivrNSWG~~WGd~Gy~~i~~~~~~~~~~Cgi~~~~~~p  213 (216)
T d1ppoa_         157 VDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYP  213 (216)
T ss_dssp             CCEEEEEEEEEEETTEEEEEEECSBCSSSTBTTEEEEECCCSSSSCGGGTTSCCEEE
T ss_pred             CCcEEEEEeccccCCCceEEEECCCCCCcccCCEEEEEcCCCCCCCcCccccEeeee
Confidence            79999    775  789999999999999999999999986543   5565665555

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-45  Score=358.52  Aligned_cols=196  Identities=39%  Similarity=0.752  Sum_probs=175.4

Q ss_pred             CCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHHcCCC
Q psy11694        297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGV  376 (655)
Q Consensus       297 P~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~Gi  376 (655)
                      |++||||++++||||||||.||||||||+++++|++++++++..+.||+|+|++|.....+|.||++..|++++...+++
T Consensus         2 P~~~DwR~~~~vtpV~dQG~cGsCwAfa~~~~~e~~~~~~~~~~~~lS~q~l~~c~~~~~~c~G~~~~~a~~~~~~~g~~   81 (215)
T d2r6na1           2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGI   81 (215)
T ss_dssp             CSCEETTTTTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCGGGCCCHHHHHHHHHHHTCE
T ss_pred             CCCEeCccCCCCCCCccCccChhHHHHHHHHHHHHHHHHHhCCCccchhhhhhhcccccCccCCcchhhHHHHHHhcCcc
Confidence            89999999999999999999999999999999999999999999999999999999888999999999999999999778


Q ss_pred             CCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC--cccccccEEe-------
Q psy11694        377 VSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVID-------  447 (655)
Q Consensus       377 ~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~--~~~Y~~Gi~~-------  447 (655)
                      .++..|||.....  .|...+.. ....+..+...+..+.++||++|.+.|||++.+.+..  |..|++||+.       
T Consensus        82 ~~~~~y~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~ik~~~~~~g~v~~~~~~~~~~f~~y~~gi~~~~~~~~~  158 (215)
T d2r6na1          82 DSEDAYPYVGQEE--SCMYNPTG-KAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD  158 (215)
T ss_dssp             EBTTTSCCCSSCC--CCCCCGGG-EEECCCEEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCTT
T ss_pred             ccccCCCcccccc--cccccccc-cceeecceeeccccHHHHHHHhhcccccEEEEEEeeechhcccCCCcccCCCCCCC
Confidence            9999999987765  44444333 5667888888888899999999999999999887655  8899999996       


Q ss_pred             -CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCCccccccccCCcc
Q psy11694        448 -LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLP  495 (655)
Q Consensus       448 -~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~~~gv~p  495 (655)
                       .+|||    ||+  +.+|||||||||++|||+|||||+|+.+..|++......|
T Consensus       159 ~~~Hav~iVGy~~~~~~~ywivrNSWG~~WGe~Gy~~i~~~~~n~Cgi~~~~~~p  213 (215)
T d2r6na1         159 NLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFP  213 (215)
T ss_dssp             CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTSSCEEE
T ss_pred             CCCeeEEEEEeeccCCCcEEEEEcCCCCCcccCCeEEEEeCCCCcCcccCccccc
Confidence             79999    666  7789999999999999999999999887778887776655

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=100.00  E-value=3.1e-44  Score=355.20  Aligned_cols=196  Identities=40%  Similarity=0.764  Sum_probs=169.3

Q ss_pred             CCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHHcCC
Q psy11694        296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGG  375 (655)
Q Consensus       296 lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~G  375 (655)
                      .|++||||++++||||||||.||||||||++++||++++++++..+.||+|+|++|...+.||.|+.+..++.++.+. |
T Consensus         1 ~P~~~DwR~~~~vtpV~dQg~cGsCwAfa~~~~~e~~~~~~~~~~~~lS~q~l~~c~~~~~g~~g~~~~~~~~~~~~~-g   79 (218)
T d1yala_           1 YPQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSYGCKGGYQTTSLQYVANN-G   79 (218)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHH-C
T ss_pred             CCCCEeCCCCCCCCCCccCCCCchHHHHHHHHHHHHHHHHHcCCCcccchhhhhccccccCCCcccccchhhhhhhhh-c
Confidence            499999999999999999999999999999999999999999999999999999999999999999999999999988 9


Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC--cccccccEEe------
Q psy11694        376 VVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVID------  447 (655)
Q Consensus       376 i~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~--~~~Y~~Gi~~------  447 (655)
                      ++.|+++||.....  .|...........+..+..++..+++.|+++ ..+|||++++.+..  |+.|++|||.      
T Consensus        80 ~~~e~~~py~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pv~~~~~~~~~~~~~y~~Giy~~~~~~~  156 (218)
T d1yala_          80 VHTSKVYPYQAKQY--KCRATDKPGPKVKITGYKRVPSNCETSFLGA-LANQPLSVLVEAGGKPFQLYKSGVFDGPCGTK  156 (218)
T ss_dssp             BCBTTTSCCCSSCC--CCCGGGCCSCCBCCSEEEECCSSBHHHHHHH-HTTSCEEEEECCCSHHHHTCCSSEECCSCCSC
T ss_pred             ccccccCCcccccC--ccccccccccceeeccceEeCCccHHHHHHH-HHhCCceEEEEecccchhhcccceeeeccccc
Confidence            99999999998776  3332222225667788888887666655555 55999999999976  7789999998      


Q ss_pred             CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCC---ccccccccCCcc
Q psy11694        448 LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGN---RTRDLELTGVLP  495 (655)
Q Consensus       448 ~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~---~~~~~~~~gv~p  495 (655)
                      ++|||    ||+  +.+|||||||||++|||+|||||+|+.+   ..|++....+.|
T Consensus       157 ~~Hav~IVGyg~~~g~~ywivkNSWG~~WGd~Gy~~I~~~~~~~~~~CGI~~~~~~p  213 (218)
T d1yala_         157 LDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYP  213 (218)
T ss_dssp             CCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCCSBSCCGGGTTSSCEEE
T ss_pred             CCcEEEEEEeeccCCceEEEEECCCCCCcccCCEEEEEccCCCCCCcCCccceeeec
Confidence            79999    765  7889999999999999999999999764   357777776666

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-44  Score=356.56  Aligned_cols=197  Identities=39%  Similarity=0.747  Sum_probs=174.2

Q ss_pred             CCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccC--CCCCCCCCcHHHHHHHHHHc
Q psy11694        296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM--SNGGCNGGRMDDALQYIIDN  373 (655)
Q Consensus       296 lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~~~~~~  373 (655)
                      ||++||||++|+||||||||.||||||||++++||++++++++....||+|++++|..  .+.+|+||++..|++++.+.
T Consensus         1 LP~~~DwR~~~~vtpV~dQG~cGsCwAfA~~~~~e~~~~~~~~~~~~lS~~~~~~~~~~~~~~~~~gg~~~~a~~~~~~~   80 (221)
T d1fh0a_           1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKEN   80 (221)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCGGGCCCHHHHHHHHHHH
T ss_pred             CCCCeeCCcCCCCCCCccCCCCchHHHHHHHHHHHHHHHHHcCCCcccccceeEEeccccCCcccCCCchhhhhhhhhhc
Confidence            7999999999999999999999999999999999999999999999999999999974  46789999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC--cccccccEEe----
Q psy11694        374 GGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVID----  447 (655)
Q Consensus       374 ~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~--~~~Y~~Gi~~----  447 (655)
                      ++++.+.+|||.....  .|...... ....+..+.......+++++++|.++|||++++.+..  |++|++||+.    
T Consensus        81 g~~~~~~~~p~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~g~~~~~~~  157 (221)
T d1fh0a_          81 GGLDSEESYPYVAVDE--ICKYRPEN-SVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDC  157 (221)
T ss_dssp             TCEEBTTTSCCCSSCC--CCCCCGGG-EEECCSCEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTC
T ss_pred             CccccccCcCcccccc--cccccccc-ccccceeeeecCCcHHHHHHHHHHhcCCceEEEEeccccccccCCCccccccc
Confidence            7789999999998776  44444333 5667777877777788899999999999999999875  8899999996    


Q ss_pred             ----CCceE----EcC------CccEEEEecCCCCccCCCceEEecccCCccccccccCCcc
Q psy11694        448 ----LNQRL----YGT------SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLP  495 (655)
Q Consensus       448 ----~~Hav----yg~------g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~~~gv~p  495 (655)
                          .+|++    ||.      +.+|||||||||++|||+|||||+|+.+..|++....+.|
T Consensus       158 ~~~~~~ha~~ivG~g~~~~~~~~~~ywivrNSWG~~WGd~Gy~~i~~~~~n~CgI~~~~~yp  219 (221)
T d1fh0a_         158 SSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYP  219 (221)
T ss_dssp             CSSCCCEEEEEEEEEESSSCTTSSEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEE
T ss_pred             cccCCcccEEEeeEeccCcCCCCceEEEEEeCCCCCcccCCEEEEEeCCCCccccCCCcccc
Confidence                68887    653      6789999999999999999999999987788888777666

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

Probab=100.00  E-value=9.4e-44  Score=351.08  Aligned_cols=196  Identities=38%  Similarity=0.761  Sum_probs=168.3

Q ss_pred             CCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHHcCC
Q psy11694        296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGG  375 (655)
Q Consensus       296 lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~G  375 (655)
                      ||++||||++++|+||||||.||||||||++++||++++++++..+.||+|+|++|+....||.||++..|++|+.++++
T Consensus         1 LP~~~DwR~~~~itpV~dQg~cgsCwAfa~~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~gc~Gg~~~~a~~y~~~~g~   80 (216)
T d1cqda_           1 LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTANHGCRGGWMNPAFQFIVNNGG   80 (216)
T ss_dssp             CCSCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHHTS
T ss_pred             CCCcccCCcCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHhCCCccccHHHhhhcccccCCCCCcchHHHHHHHHhcCC
Confidence            79999999999999999999999999999999999999999999999999999999988899999999999999999977


Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC--cccccccEEe------
Q psy11694        376 VVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVID------  447 (655)
Q Consensus       376 i~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~--~~~Y~~Gi~~------  447 (655)
                      +..|++|||.+...  .|...... ....+..+..+...+++ ++..+...+||++++.+..  |..|++|||.      
T Consensus        81 ~~~e~~~p~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~pv~~~~~~~~~~~~~y~~gi~~~~~~~~  156 (216)
T d1cqda_          81 INSEETYPYRGQDG--ICNSTVNA-PVVSIDSYENVPSHNEQ-SLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNIS  156 (216)
T ss_dssp             BCBTTTSCCCSSCC--CCCSSSCC-CSBCCSEEEECCSSCHH-HHHHHHTTSCEEEEECCCSHHHHTCCSSEECCCCCCC
T ss_pred             ccccccCCcccccc--ccccccCC-ceeEeeeEEecCCcchh-hHHHHhhcCCcceeeeeecccccccccCccccccccc
Confidence            78899999998776  44443333 45677788888775554 4555556899999998876  8899999998      


Q ss_pred             CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCC---ccccccccCCcc
Q psy11694        448 LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGN---RTRDLELTGVLP  495 (655)
Q Consensus       448 ~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~---~~~~~~~~gv~p  495 (655)
                      ++|||    ||+  +.+|||||||||++||++|||||+|+.+   ..|++......|
T Consensus       157 ~~Hav~iVGyg~~~~~~~wiv~NSWG~~WGd~Gy~~i~~~~~~~~~~Cgi~~~~~~p  213 (216)
T d1cqda_         157 ANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYP  213 (216)
T ss_dssp             CCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEE
T ss_pred             CCcceeeeccccccCCceEEEECCCCCccccCCEEEEEcCCCCCCCCCCccceeeee
Confidence            79999    765  7889999999999999999999998753   356776666555

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-44  Score=353.33  Aligned_cols=194  Identities=35%  Similarity=0.753  Sum_probs=164.0

Q ss_pred             CCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHHcCCC
Q psy11694        297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGGV  376 (655)
Q Consensus       297 P~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~Gi  376 (655)
                      |++||||++++||||||||.||||||||++++||++++++++..+.||+|+|++|...+.||.||.+..+++|+.+.+++
T Consensus         2 P~~~D~R~~~~vtpV~dQg~cGsCwAfa~~~~le~~~~~~~~~~~~~S~q~~~~c~~~~~gc~G~~~~~~~~~~~~~g~~   81 (214)
T d1m6da_           2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDKACMGGLPSNAYSAIKNLGGL   81 (214)
T ss_dssp             CSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCSSSCTTBCCCHHHHHHHHHHHTCB
T ss_pred             CCceeCCCCCCCCCCccCCcCccHHHHHHHHHHHHHHHHHcCCCcccCHHHhccccccCCccCCCcchhhHHHHHhCCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999779


Q ss_pred             CCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCCcccccccEEe---------
Q psy11694        377 VSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVID---------  447 (655)
Q Consensus       377 ~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~~~~Y~~Gi~~---------  447 (655)
                      +.|.+|||.+...  .|...... ....+..+... ..+.+.||++|+++|||+++|.+..+++|..|++.         
T Consensus        82 ~~e~~~py~~~~~--~~~~~~~~-~~~~~~~~~~~-~~~~~~ik~~i~~~gpv~~~~~~~~~~~~~~g~~~~~~~~~~~~  157 (214)
T d1m6da_          82 ETEDDYSYQGHMQ--SCQFSAEK-AKVYIQDSVEL-SQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPW  157 (214)
T ss_dssp             CBTTTSCCCSSCC--CCCCCGGG-CCBCCSEEEEC-CSCHHHHHHHHHHHCCEEEEECTHHHHHCCSSEECCCGGGSCTT
T ss_pred             cccccccccCccC--cccccccc-cceeeeccccc-ccCHHHHHHHHHhcCCeEEEEEEEehhhccCCccccccCCCCCc
Confidence            9999999998766  55443332 23333344433 44899999999999999999999876666666653         


Q ss_pred             -CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCCccccccccCCcc
Q psy11694        448 -LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLP  495 (655)
Q Consensus       448 -~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~~~gv~p  495 (655)
                       ++|||    ||+  +.+|||||||||++|||+|||||+|+.| .|++......|
T Consensus       158 ~~~HaV~iVGyg~~~~~~ywivkNSWG~~WGd~Gy~~i~~g~n-~cgI~~~~~~~  211 (214)
T d1m6da_         158 LIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSG-ACGVNTMASSA  211 (214)
T ss_dssp             CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSC-GGGTTTTCEEE
T ss_pred             ccceeEEEEcccccCCceEEEEECCCCCccccCCEEEEEcCCC-cccccceeeEE
Confidence             78999    765  7889999999999999999999999755 36666554433

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-44  Score=352.41  Aligned_cols=197  Identities=43%  Similarity=0.834  Sum_probs=176.0

Q ss_pred             CCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccC---CCCCCCCCcHHHHHHHHHH
Q psy11694        296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDM---SNGGCNGGRMDDALQYIID  372 (655)
Q Consensus       296 lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~---~~~gC~GG~~~~a~~~~~~  372 (655)
                      ||++||||+.++||||||||.||||||||++++||++++|+++....||+|++++|..   .+.||+||.+..|+.++..
T Consensus         1 LP~~~Dwr~~~~vtpV~dQG~cGsCwAfA~~~~~e~~~~i~~~~~~~~S~~~~~~~~~~~~~~~gc~gg~~~~a~~~~~~   80 (217)
T d2h7ja1           1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIID   80 (217)
T ss_dssp             CCSCEEGGGGTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHSCGGGTCCTTBCCCHHHHHHHHHH
T ss_pred             CCCcccCCcCCCCCCCccCCCchHHHHHHHHHHHHHHHHHHhCCCCcccHHHhhhhhcccccCCCCCCCcccceeeehhh
Confidence            7999999999999999999999999999999999999999999999999999999975   3689999999999999888


Q ss_pred             cCCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC--cccccccEEe---
Q psy11694        373 NGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVID---  447 (655)
Q Consensus       373 ~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~--~~~Y~~Gi~~---  447 (655)
                      .+|++++.+|||.....  .|...... ....+..+.......++.|+++|+..|||++++....  |..|++|||.   
T Consensus        81 ~~g~~~~~~~p~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~v~~~~~~~~~~f~~~~~gi~~~~~  157 (217)
T d2h7ja1          81 NKGIDSDASYPYKAMDQ--KCQYDSKY-RAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPS  157 (217)
T ss_dssp             HTCEEBTTTSCCCSSCC--CCCCCGGG-EEECCCEEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSCBCCTT
T ss_pred             cccccccccCCCccccc--cccccccc-ccceeeeeeccCccHHHHHHHHhhcCceEEEEEeeehhhhcccCCcceeCCC
Confidence            88999999999998776  45444433 6677888888888899999999999999999987655  8889999996   


Q ss_pred             ----CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCCccccccccCCcc
Q psy11694        448 ----LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGVLP  495 (655)
Q Consensus       448 ----~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~~~gv~p  495 (655)
                          ++|||    ||+  +.+|||||||||++|||+|||||+|+.+..|+++...+.|
T Consensus       158 ~~~~~~Hav~iVGy~~~~~~~ywivrNSWG~~WG~~Gy~~i~~~~~n~cgi~~~~~~p  215 (217)
T d2h7ja1         158 CTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP  215 (217)
T ss_dssp             CCSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEE
T ss_pred             CCCCCCeEEEEEecccCCCceEEEEEcCCCCCcccCCEEEEecCCCCcCCccccccce
Confidence                79999    775  7899999999999999999999999987778887766655

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=100.00  E-value=1.5e-43  Score=348.37  Aligned_cols=196  Identities=33%  Similarity=0.628  Sum_probs=167.9

Q ss_pred             CCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHHcCC
Q psy11694        296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGG  375 (655)
Q Consensus       296 lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~G  375 (655)
                      ||++||||++++|+||||||.||||||||++++||++++++++....||+|+++||.....||.||.+..|+.++.+. |
T Consensus         1 LP~~~D~R~~~~v~pV~dQg~cGsCwAfa~~~~~e~~~~i~~~~~~~~S~q~~~~c~~~~~g~~g~~~~~a~~~~~~~-g   79 (212)
T d1khqa_           1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQY-G   79 (212)
T ss_dssp             CCSCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCBCHHHHHHHHHHT-C
T ss_pred             CCCCeeCCCCCCCCCcccCCcCchHHHHHHHHHHHHHHHHHcCCCcccCHHHhhccccccCccccccccccccccccc-c
Confidence            799999999999999999999999999999999999999999999999999999999888999999999999999988 9


Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC--cccccccEEe------
Q psy11694        376 VVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVID------  447 (655)
Q Consensus       376 i~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~--~~~Y~~Gi~~------  447 (655)
                      +++|..+||.+...  .|...........+..+......+++.++.++. .|||++++.+..  |..|++|+|.      
T Consensus        80 ~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pv~~~~~~~~~~f~~~~~g~~~~~~~~~  156 (212)
T d1khqa_          80 IHYRNTYPYEGVQR--YCRSREKGPYAAKTDGVRQVQPYNEGALLYSIA-NQPVSVVLEAAGKDFQLYRGGIFVGPCGNK  156 (212)
T ss_dssp             BCBTTTSCCCSSCC--CCCTTTTCSCSBCCCEEEECCTTCHHHHHHHHH-HSCEEEEECCCSHHHHTCCSSEECCSCCSC
T ss_pred             ccccccCCcccccC--cccccccccceeeeeeeeeeccccHHHHHHHHh-cCCcEEEEEeecchhcccccCccccccccc
Confidence            99999999998766  443333332455666777777766666666655 889888888765  8899999997      


Q ss_pred             CCceE--EcCCccEEEEecCCCCccCCCceEEecccCCc---cccccccCCcc
Q psy11694        448 LNQRL--YGTSIPYWIVKNSWGSDWGEKVEDKVGSSGNR---TRDLELTGVLP  495 (655)
Q Consensus       448 ~~Hav--yg~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~---~~~~~~~gv~p  495 (655)
                      ++|||  .|.|.+|||||||||++||++|||||+|+.+.   .|++....+.|
T Consensus       157 ~~Hav~iVGyg~~ywivrNSWG~~WGd~Gy~~i~~~~~~~~~~Cgi~~~~~~p  209 (212)
T d1khqa_         157 VDHAVAAVGYGPNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYP  209 (212)
T ss_dssp             CCEEEEEEEEETTEEEEECSBCTTSTBTTEEEEECCSCCTTCGGGTTSCCEEE
T ss_pred             cCeEEEecccCCcEEEEEcCCCCCcccCCEEEEEcCCCCCCCcCCcccEeeee
Confidence            79999  66677899999999999999999999997643   56776666665

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

Probab=100.00  E-value=4.3e-43  Score=344.35  Aligned_cols=195  Identities=41%  Similarity=0.765  Sum_probs=171.5

Q ss_pred             CCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHHcCC
Q psy11694        296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGG  375 (655)
Q Consensus       296 lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~G  375 (655)
                      ||++||||++++||||||||.||||||||++++||++++++++..+.||+|+|++|...+.+|.||.+..++.++...++
T Consensus         1 LP~~~D~R~~~~vtpV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~~~~g~~~~~~~~~~~~~g~   80 (208)
T d1o0ea_           1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKNHGCLGGAFVFAYQYIINNGG   80 (208)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHHTC
T ss_pred             CCCcccCccCCCCCCcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcCHHHhhhhccCCCCCCCccchhhhhhhhhcCc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999978


Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC--cccccccEEe------
Q psy11694        376 VVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVID------  447 (655)
Q Consensus       376 i~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~--~~~Y~~Gi~~------  447 (655)
                      +.++.++||.....  .|....   ....+.+|..++..++..++.++. .|||++++....  |..|.+|||.      
T Consensus        81 ~~~~~~~p~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~pv~~~~~~~~~~f~~~~~gi~~~~~~~~  154 (208)
T d1o0ea_          81 IDTQANYPYKAVQG--PCQAAS---KVVSIDGYNGVPFCNEXALKQAVA-VQPSTVAIDASSAQFQQYSSGIFSGPCGTK  154 (208)
T ss_dssp             BCBTTTSCCCSSCC--CCCCCC---CCBCCCEEEECCTTCHHHHHHHHH-HSCEEEEECCCSHHHHTCCSSEECCCCCSC
T ss_pred             cccccCCCCcccCC--CccCcc---cccccccccccccchhhHHHHHhh-cCCceEEEEecchhhcccccCccccccccc
Confidence            89999999998877  776544   346678888888877777776666 678888877654  8899999997      


Q ss_pred             CCceE--EcCCccEEEEecCCCCccCCCceEEecccC-CccccccccCCccc
Q psy11694        448 LNQRL--YGTSIPYWIVKNSWGSDWGEKVEDKVGSSG-NRTRDLELTGVLPS  496 (655)
Q Consensus       448 ~~Hav--yg~g~~yWivkNSWG~~WGe~Gy~~i~~~~-~~~~~~~~~gv~p~  496 (655)
                      .+|||  .|.+.+|||||||||++|||+|||||+|.. ...|++...+..|.
T Consensus       155 ~~Hav~iVGy~~~ywiirNSWG~~WGd~Gy~~I~~~~~~~~Cgi~~~~~~p~  206 (208)
T d1o0ea_         155 LNHGVTIVGYQANYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPT  206 (208)
T ss_dssp             CCEEEEEEEECSSEEEEECSBCTTSTBTTEEEEECCSTTCGGGTTSSCEEEE
T ss_pred             CCcEEEEEeeecceEEEECCCCCCcccCCeEEEEccCCCCccCccccceecc
Confidence            79999  777789999999999999999999999964 45688877777664

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=7.5e-43  Score=344.44  Aligned_cols=193  Identities=36%  Similarity=0.803  Sum_probs=167.3

Q ss_pred             CCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHHc--C
Q psy11694        297 PEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDN--G  374 (655)
Q Consensus       297 P~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~--~  374 (655)
                      |++||||++|+|+||||||.||||||||++++||++++|+++....||+|+|++|...+.+|.|+....++.++...  .
T Consensus         2 P~~~DwR~~~~vtpV~dQg~cGsCwAfa~~~~le~~~~i~~~~~~~ls~q~l~~c~~~~~~~~g~~~~~~~~~~~~~~~~   81 (215)
T d1me4a_           2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNG   81 (215)
T ss_dssp             CSEEEGGGTTCCCCCCBCTTSSCHHHHHHHHHHHHHHHHTTSCCCCBCHHHHHHHCTTSCGGGCCCHHHHHHHHHHHSTT
T ss_pred             CCCeeCCCCCCCCCCccCCcCccHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhhcCCCCCCCCcccccceeeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999988999999999988887553  4


Q ss_pred             CCCCCCCCCCCCCCCCCccccCCCC--CceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCCcccccccEEe-----
Q psy11694        375 GVVSDQAYPYKASESERGCLVGEEE--GFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANGLFYYSGGVID-----  447 (655)
Q Consensus       375 Gi~~e~~yPY~~~~~~~~C~~~~~~--~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~~~~Y~~Gi~~-----  447 (655)
                      |++++.+|||.....  .|......  ....++..+..+.. +.+.||++|+++|||++++.+..|+.|.++++.     
T Consensus        82 ~~~~~~~ypy~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ik~~i~~~gpv~~~~~~~~~~~~~~~~~~~~~~~  158 (215)
T d1me4a_          82 AVYTEDSYPYASGEG--ISPPCTTSGHTVGATITGHVELPQ-DEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSE  158 (215)
T ss_dssp             EEEBTTTSCCCCTTS--CCCCCCCSSCCEEEECCEEEECCS-CHHHHHHHHHHHCCEEEEECCTTGGGCCSSEECSCCCS
T ss_pred             ccccCcccCcccccc--ccccccccccccceEeeeeeeccc-cHHHHHHHHHhcCceeEEEEeeeecccccccccCCccc
Confidence            789999999988766  44432221  14567777877765 789999999999999999999889999999997     


Q ss_pred             -CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCCccccccccCC
Q psy11694        448 -LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNRTRDLELTGV  493 (655)
Q Consensus       448 -~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~~~~gv  493 (655)
                       .+|||    ||+  +.+|||||||||++|||+|||||+|+.| .|+++....
T Consensus       159 ~~~Hav~IVGyg~~~~~~ywivrNSWG~~WGd~Gy~~i~~g~n-~cgI~~~~~  210 (215)
T d1me4a_         159 QLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSN-QCLVKEEAS  210 (215)
T ss_dssp             CCCEEEEEEEEESSSSSCEEEEECSBCTTSTBTTEEEEESSSC-GGGTTSSEE
T ss_pred             cceeEEEEEEccccCCceEEEEEcCCCCCcccCCEEEEECCCC-ccccCCcee
Confidence             79999    776  8899999999999999999999999765 456555443

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

Probab=100.00  E-value=7.1e-43  Score=345.32  Aligned_cols=198  Identities=37%  Similarity=0.711  Sum_probs=165.9

Q ss_pred             CCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCC--CCCCCCCcHHHHHHHHHHc
Q psy11694        296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS--NGGCNGGRMDDALQYIIDN  373 (655)
Q Consensus       296 lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~--~~gC~GG~~~~a~~~~~~~  373 (655)
                      ||++||||++++|+||||||.||||||||++++||++++++++..+.||+|+|++|...  +.+|.||....++.++.+.
T Consensus         1 LP~~~Dwr~~~~itpV~dQg~cGsCwAfA~~~~~e~~~~~~~~~~~~lS~q~~~~c~~~~~~~~~~G~~~~~~~~~~~~~   80 (218)
T d1aeca_           1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTRGCNGGYITDGFQFIINN   80 (218)
T ss_dssp             CCSCEEGGGGTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCBTTBCTTBCCCHHHHHHHHHHH
T ss_pred             CCCceeCCCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHhcCCCcchhhhhhhhhccccCCcccCCCcccccceeehhC
Confidence            79999999999999999999999999999999999999999999999999999999853  5688999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC--cccccccEEe----
Q psy11694        374 GGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVID----  447 (655)
Q Consensus       374 ~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~--~~~Y~~Gi~~----  447 (655)
                      ++++.|.+|||.....  .|...... ..+....+......+.+.|+++|..+|||+++|.+..  +.++.+|++.    
T Consensus        81 g~v~~e~~yp~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gpv~v~~~~~~~~~~~~~~g~~~~~~~  157 (218)
T d1aeca_          81 GGINTEENYPYTAQDG--ECNVDLQN-EKYVTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCG  157 (218)
T ss_dssp             TCBCBTTTSCCCSSCC--CCCHHHHH-CCCBCCCEEEECCSSCHHHHHHHHHHSCEEEEECCCSHHHHHCCSSEECCSCC
T ss_pred             ceecCccccCcccccC--ccceeccc-cccceecccccccccHHHHHHHHhhcCCceeEEEecchhhhcCCCCccccccc
Confidence            7799999999998776  44432222 2233334444444578899999999999999999887  5567788886    


Q ss_pred             --CCceE----EcC--CccEEEEecCCCCccCCCceEEeccc--CCccccccccCCccc
Q psy11694        448 --LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSS--GNRTRDLELTGVLPS  496 (655)
Q Consensus       448 --~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~--~~~~~~~~~~gv~p~  496 (655)
                        .+|||    ||+  +.+|||||||||++||++|||||+|+  +...|++......|.
T Consensus       158 ~~~~Hav~iVGyg~~~~~~ywivrNSWG~~WGd~Gy~~i~~~~~~~~~Cgi~~~~~~~~  216 (218)
T d1aeca_         158 TAIDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV  216 (218)
T ss_dssp             SSCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCCSTTCGGGTTSSCEEEE
T ss_pred             ccCCceeEEEEEeccCCeEEEEEEcCCCCCcccCCEEEEEeCCCCCcccccCCcceecc
Confidence              89998    665  78899999999999999999999985  344677776665553

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=100.00  E-value=2.9e-42  Score=342.33  Aligned_cols=199  Identities=40%  Similarity=0.803  Sum_probs=169.3

Q ss_pred             CCCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCC-CCCCCCCcHHHHHHHHHHc
Q psy11694        295 DLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMS-NGGCNGGRMDDALQYIIDN  373 (655)
Q Consensus       295 ~lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~-~~gC~GG~~~~a~~~~~~~  373 (655)
                      .||++||||++++||||||||.||||||||+++++|++++++++....||+|+|++|... ..+|.||....|+.++.++
T Consensus         1 ~lP~~~Dwr~~~~itpV~dQG~cGsCwAfA~~~~~e~~~~~~~~~~~~~S~q~l~~c~~~~~~~~~G~~~~~a~~~~~~~   80 (224)
T d1s4va_           1 TVPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQR   80 (224)
T ss_dssp             CCCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCSSCCTTBCBCHHHHHHHHHHH
T ss_pred             CCCCceeCCCCCCCCCCccCCcCchHHHHHHHHHHHHHHHHhcCCCCccchhhhhhccccccccCCCCchhhHhhhHhhc
Confidence            489999999999999999999999999999999999999999999999999999999864 4678999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC--cccccccEEe----
Q psy11694        374 GGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVID----  447 (655)
Q Consensus       374 ~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~--~~~Y~~Gi~~----  447 (655)
                      +|++.|.++||.....  .|...........+..+..+...+.+.||++|+ .+||++++.+..  |..|.+|+|.    
T Consensus        81 g~~~~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~-~~pv~~~~~~~~~~~~~y~~g~~~~~~~  157 (224)
T d1s4va_          81 GGITTEANYPYEAYDG--TCDVSKENAPAVSIDGHENVPENDENALLKAVA-NQPVSVAIDAGGSDFQFYSEGVFTGSCG  157 (224)
T ss_dssp             TCBCBTTTSCCCSSCC--CCCHHHHTCCCBCCCEEEECCTTCHHHHHHHHH-HSCEEEEECCCSHHHHTCCSSEECCCCC
T ss_pred             CceeecccccccCcCC--ccccccccccceeecccccccCccHHHHHHHHh-cCCceEEEEecchhhhhccCCCccCccc
Confidence            8899999999988766  333222222455677788888889999999999 578888887765  8899999997    


Q ss_pred             --CCceE----EcC---CccEEEEecCCCCccCCCceEEecccCC---ccccccccCCccc
Q psy11694        448 --LNQRL----YGT---SIPYWIVKNSWGSDWGEKVEDKVGSSGN---RTRDLELTGVLPS  496 (655)
Q Consensus       448 --~~Hav----yg~---g~~yWivkNSWG~~WGe~Gy~~i~~~~~---~~~~~~~~gv~p~  496 (655)
                        .+|||    ||+   +.+|||||||||++||++|||||+|+.+   ..|++....+.|.
T Consensus       158 ~~~~Hav~iVGy~~~~~g~~ywiikNSWG~~WG~~Gy~~i~~g~~~~~n~CgI~~~~~yp~  218 (224)
T d1s4va_         158 TELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPI  218 (224)
T ss_dssp             CCCCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEE
T ss_pred             ccCCcceEEEecccccCCceEEEEEcCCCCccccCceEEEECCCCCCCCcCCccceeeeee
Confidence              79999    753   7889999999999999999999999743   4567777666663

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

Probab=100.00  E-value=4.8e-42  Score=338.62  Aligned_cols=195  Identities=39%  Similarity=0.754  Sum_probs=165.3

Q ss_pred             CCCceecCCCCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHccCCCCCCCCCcHHHHHHHHHHcCC
Q psy11694        296 LPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNSLTELSVQQLVDCDMSNGGCNGGRMDDALQYIIDNGG  375 (655)
Q Consensus       296 lP~~~Dwr~~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~~G  375 (655)
                      ||++||||++++|+||||||.||||||||++++||++++++++..+.||+|+|++|.....||.||....|++++.++++
T Consensus         1 LP~s~Dwr~~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~~~~G~~~~~a~~~~~~~g~   80 (215)
T d1iwda_           1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTASHGCNGGWMNNAFQYIITNGG   80 (215)
T ss_dssp             CCSCEEGGGGTCSCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHHTC
T ss_pred             CCCceeCCcCCCCCCCccCCCCchHHHHHHHHHHHHHHHHhcCCCcccChhhheecccCCCCCCCcchhhHHHHHHhcCe
Confidence            79999999999999999999999999999999999999999999999999999999998899999999999999999977


Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEEEEcCC--cccccccEEe------
Q psy11694        376 VVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVGMNANG--LFYYSGGVID------  447 (655)
Q Consensus       376 i~~e~~yPY~~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~i~~~~--~~~Y~~Gi~~------  447 (655)
                      +..+.++||.....  .|.....  ...++.+|..+....++.++.++. .+||++++.+..  +..|.+|+|.      
T Consensus        81 ~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~pv~~~~~~~~~~~~~~~~g~~~~~~~~~  155 (215)
T d1iwda_          81 IDTQQNYPYSAVQG--SCKPYRL--RVVSINGFQRVTRNNESALQSAVA-SQPVSVTVEAAGAPFQHYSSGIFTGPCGTA  155 (215)
T ss_dssp             BCBTTTSCCCSSCC--CCCTTCC--CCBCCCEEEECCTTCHHHHHHHHH-HSCEEEEECCCSHHHHTCCSSEECCCCCCC
T ss_pred             eccccCCCcccccc--ccccccc--ceeEeccccccCccHHHHHHHHHh-cCCccceeeecchhhhccccCccccccccc
Confidence            88888888887766  4443332  356788888888766666665555 799999998877  6677889997      


Q ss_pred             CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCCc---cccccccCCcc
Q psy11694        448 LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNR---TRDLELTGVLP  495 (655)
Q Consensus       448 ~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~---~~~~~~~gv~p  495 (655)
                      .+|||    ||+  +.+|||||||||++|||+|||||+|+.+.   .|++......|
T Consensus       156 ~~Hav~iVGyg~~~~~~ywiirNSWG~~WGd~Gy~~I~~~~~~~~~~CGi~~~~~~p  212 (215)
T d1iwda_         156 QNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYP  212 (215)
T ss_dssp             CCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEE
T ss_pred             ccceEEEEEeecCCCceEEEEECCCCcccccCCEEEEECCCCCCCCcCCccccceee
Confidence            79998    765  78999999999999999999999998653   35554443333

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-42  Score=352.25  Aligned_cols=187  Identities=30%  Similarity=0.618  Sum_probs=156.0

Q ss_pred             CCCCCceecCCCC---CCCcCCCCC---CCccHHHHHHHHHHHHHHHHhcCC---CcCCCHHHHHHccCCCCCCCCCcHH
Q psy11694        294 DDLPEAFDWRAEG---VISKVKEQG---KCACCWAFSAVGVVEAMHAIQGNS---LTELSVQQLVDCDMSNGGCNGGRMD  364 (655)
Q Consensus       294 ~~lP~~~Dwr~~g---~vtpVkdQg---~CGsCwAfa~~~~le~~~~i~~~~---~~~lS~q~l~dC~~~~~gC~GG~~~  364 (655)
                      .+||++||||+.|   +++||||||   .||||||||++++||++++|+++.   ...||+|+|++|... .+|.||++.
T Consensus        32 ~~LP~~~DwR~~~~~~~~tpvkdQG~~~~CGsCWAfAa~~~lE~~~~i~~~~~~~~~~lS~q~l~~~~~~-~~c~GG~~~  110 (275)
T d1deua_          32 ADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNA-GSCEGGNDL  110 (275)
T ss_dssp             GGSCSCEETTSBTTBCCCCCCCBTTCSSCCBCHHHHHHHHHHHHHHHHHTTTCSSCCCBCHHHHHHHSSS-EETBEECHH
T ss_pred             ccCCCccccCcCCCcCCCCCcccCCCCCCCcCHHHHHHHHHHHHHHHHHcCCcccccccchhheeccccc-cccCCcccc
Confidence            5799999999975   679999999   699999999999999999998763   356999999999754 699999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCCCCCCc-------cccCC-----CCCceeeeeceEEcCCCCHHHHHHHHhhCCCeEEE
Q psy11694        365 DALQYIIDNGGVVSDQAYPYKASESERG-------CLVGE-----EEGFKVKVKEYSRIPYGEEEEMKKWVATRGPLSVG  432 (655)
Q Consensus       365 ~a~~~~~~~~Gi~~e~~yPY~~~~~~~~-------C~~~~-----~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~  432 (655)
                      .+++|+.++ |+++|++|||........       |....     .....+++.+|..+.  +.+.||++|+++|||+++
T Consensus       111 ~a~~~~~~~-G~~~e~~~PY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~e~ik~~l~~~GPv~v~  187 (275)
T d1deua_         111 SVWDYAHQH-GIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLS--GREKMMAEIYANGPISCG  187 (275)
T ss_dssp             HHHHHHHHT-CBCBGGGSCCCSSCCCCCHHHHSEEEEETTEEEECSSCCCBCEEEEEEEC--SHHHHHHHHHHHCCEEEE
T ss_pred             cccchhhcc-cccccccccccccCCCcccccccCcccccceeeeccceeEEEeCceeecC--cHHHHHHHHHhCCCcEEE
Confidence            999999888 999999999998765210       11100     001234566666665  478899999999999999


Q ss_pred             EEcCC-cccccccEEe-------CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCCc
Q psy11694        433 MNANG-LFYYSGGVID-------LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGNR  484 (655)
Q Consensus       433 i~~~~-~~~Y~~Gi~~-------~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~~  484 (655)
                      |.+.. |++|++|||.       ++|||    ||+  +.+|||||||||++|||+|||||+++.+.
T Consensus       188 ~~~~~~f~~y~~Gi~~~~~~~~~~~HAV~IVGyg~~~g~~ywivrNSWG~~WGd~Gyf~I~~~~~~  253 (275)
T d1deua_         188 IMATERLANYTGGIYAEYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYK  253 (275)
T ss_dssp             ECCCHHHHTCCSSEECBCCSCCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECTTHH
T ss_pred             EEeccchhccCCCcccCccccccCCeEEEEEEEeccCCcEEEEEECCCCCCcccCCEEEEECCCCC
Confidence            99987 8999999996       89999    765  88999999999999999999999998754

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-40  Score=335.50  Aligned_cols=197  Identities=28%  Similarity=0.545  Sum_probs=153.6

Q ss_pred             CCCCceecCC----CCCCCcCCCCCCCccHHHHHHHHHHHHHHHHhcCC--CcCCCHHHHHHcc--CCCCCCCCCcHHHH
Q psy11694        295 DLPEAFDWRA----EGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNS--LTELSVQQLVDCD--MSNGGCNGGRMDDA  366 (655)
Q Consensus       295 ~lP~~~Dwr~----~g~vtpVkdQg~CGsCwAfa~~~~le~~~~i~~~~--~~~lS~q~l~dC~--~~~~gC~GG~~~~a  366 (655)
                      .||++||||+    .++||||||||.||||||||++++||++++++++.  ...||+|+|++|.  ..+.||.||++..|
T Consensus         1 ~lP~~~D~R~~w~~~~~vtpV~dQg~cGsCwAfA~~~~lEs~~~i~~~~~~~~~lS~~~l~~~~~~~~~~gc~gg~~~~a   80 (254)
T d1gmya_           1 KLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEA   80 (254)
T ss_dssp             CCCSSEEHHHHSTTCGGGGCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTSSCCCBCHHHHHHHSGGGGBCGGGCBCHHHH
T ss_pred             CCCcCCcchhhcCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHCCCCccccchHHHHhhccccCCCCCCCCcHHHH
Confidence            4899999766    69999999999999999999999999999998764  4679999999996  34689999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCCCCC--------------CccccCCCC-------------C-ceeeeeceEE-cCCCCHH
Q psy11694        367 LQYIIDNGGVVSDQAYPYKASESE--------------RGCLVGEEE-------------G-FKVKVKEYSR-IPYGEEE  417 (655)
Q Consensus       367 ~~~~~~~~Gi~~e~~yPY~~~~~~--------------~~C~~~~~~-------------~-~~~~i~~~~~-v~~~~~~  417 (655)
                      ++++.+. |+++|..|||......              ..|......             . ...+...+.. ....+++
T Consensus        81 ~~~~~~~-G~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (254)
T d1gmya_          81 WNFWTRK-GLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEK  159 (254)
T ss_dssp             HHHHHHT-CBCBCCSTTCCCSSSCCCSCCCBSSSCCSSCBCCSCCCCCCCCCSCCTTCCSCHHHHCBCBSCCEECCSCHH
T ss_pred             HHHHHHc-CccccccccccccccccccccccccccCccCccccccCCccccccccCCcccceeeeeeeeeeeeccccHHH
Confidence            9999888 9999999986542110              011111000             0 0000011111 1223689


Q ss_pred             HHHHHHhhCCCeEEEEEcCC-cccccccEEe-------CCceE----EcC--CccEEEEecCCCCccCCCceEEecccCC
Q psy11694        418 EMKKWVATRGPLSVGMNANG-LFYYSGGVID-------LNQRL----YGT--SIPYWIVKNSWGSDWGEKVEDKVGSSGN  483 (655)
Q Consensus       418 ~ik~~l~~~gPV~v~i~~~~-~~~Y~~Gi~~-------~~Hav----yg~--g~~yWivkNSWG~~WGe~Gy~~i~~~~~  483 (655)
                      .||++|+.+|||++++.+.. |+.|.+||+.       ++|||    ||+  +.+|||||||||++||++|||||+|+.|
T Consensus       160 ~ik~~l~~~gpv~~~~~~~~~f~~y~~gi~~~~~~~~~~~Hav~IVGyg~~~g~~ywIvkNSWG~~WGd~GYf~i~~~~n  239 (254)
T d1gmya_         160 DIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQD  239 (254)
T ss_dssp             HHHHHHHHHCCEEEEEEEEGGGTTCCSSEECCCSCCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSC
T ss_pred             HHHHHHHHcCCEEEEEEeechhhhccCCccccccccccccEEEEEEEEeccCCceEEEEEcCCCCCcCCCceEEEEcCCC
Confidence            99999999999999999976 9999999997       79999    765  8899999999999999999999999766


Q ss_pred             ccccccccCC
Q psy11694        484 RTRDLELTGV  493 (655)
Q Consensus       484 ~~~~~~~~gv  493 (655)
                      . |+++...+
T Consensus       240 ~-cgi~~~~~  248 (254)
T d1gmya_         240 H-CGIESEVV  248 (254)
T ss_dssp             G-GGTTTSCE
T ss_pred             c-cCcCCceE
Confidence            4 66655443

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-32  Score=284.47  Aligned_cols=141  Identities=23%  Similarity=0.375  Sum_probs=115.3

Q ss_pred             CchHHHHHHHHHHcCcccCChHHHHHHHHHHHHHHHHHHHHhcc---CCCCeeeeccCCCCCCHHHHHHHhCCCCCCCcc
Q psy11694         39 NSPVTRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQRE---DSGTAVFEVNKFFDLSDSDLQQLTGLNLDSTLE  115 (655)
Q Consensus        39 ~~~~~~f~~~~~~~~k~Y~~~~e~~~r~~~f~~n~~~i~~~n~~---~~~~~~~g~N~fsDlt~~E~~~~~g~~~~~~~~  115 (655)
                      +.++.+|++||++|+|+|.+ +|+.+|+.||++|+++|++||++   ...+|+||||+|||||.|||+.++.....+...
T Consensus         6 ~~l~~~F~~f~~~~~K~Y~~-~ee~~R~~iF~~N~~~I~~~N~~~~~~~~~~~~g~N~fsDlt~eEf~~~~~~~~~~~~~   84 (316)
T d1cs8a_           6 HSLEAQWTKWKAMHNRLYGM-NEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPR   84 (316)
T ss_dssp             GGGHHHHHHHHHHTTCCCCT-THHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCTTTTCCHHHHHHHHCCBCCCCCS
T ss_pred             HHHHHHHHHHHHHhCCcCCC-HHHHHHHHHHHHHHHHHHHHHhHhhcCCCceEEeceeccccCcHHHHhhhccccccccc
Confidence            45667899999999999988 56689999999999999999986   457999999999999999996666433222111


Q ss_pred             ccCCCcCCCCCCCccchhhhhhhcccCCCCCCCCccccccccCccccccCCCcceeeecccchhhHHhhhhhcccchhhh
Q psy11694        116 DIQPSLQAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTEL  195 (655)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWr~~g~Vt~VkdQg~c~~~~a~~~~~~~e~~~~i~~~~l~~~  195 (655)
                      ...   . ...                ....++|++||||++|+||||||||.|||||||++++++|+..++..+.++.+
T Consensus        85 ~~~---~-~~~----------------~~~~~lP~s~Dwr~~g~vtpVkdQG~CGsCwAfa~~~~~E~~~~i~~~~~~~l  144 (316)
T d1cs8a_          85 KGK---V-FQE----------------PLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISL  144 (316)
T ss_dssp             CCE---E-CCC----------------CTTCCCCSCEEGGGGTCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCB
T ss_pred             cCc---c-ccC----------------cccccCCCceECCcCCcccccccCCCCceeeehhhhHHHHHHHHhhcCCcccc
Confidence            000   0 000                01237999999999999999999999999999999999999999999999999


Q ss_pred             hhhcc
Q psy11694        196 SVQHH  200 (655)
Q Consensus       196 ~~q~~  200 (655)
                      |+|+.
T Consensus       145 S~Q~l  149 (316)
T d1cs8a_         145 SEQNL  149 (316)
T ss_dssp             CHHHH
T ss_pred             hhhhh
Confidence            88875

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

Probab=99.96  E-value=9.6e-31  Score=270.14  Aligned_cols=136  Identities=20%  Similarity=0.325  Sum_probs=106.5

Q ss_pred             HHHHHHHHHcCcccCChHHHHHHHHHHHHHHHHHHHHhccCCCCeeeeccCCCCCCHHHHHH-HhCCCCCCCccccCCCc
Q psy11694         43 TRFLNFMRDHDKVYSSVEDLLRRHENFVTNVEKAEDYQREDSGTAVFEVNKFFDLSDSDLQQ-LTGLNLDSTLEDIQPSL  121 (655)
Q Consensus        43 ~~f~~~~~~~~k~Y~~~~e~~~r~~~f~~n~~~i~~~n~~~~~~~~~g~N~fsDlt~~E~~~-~~g~~~~~~~~~~~~~~  121 (655)
                      .+|++||++|+|+|.+.+|+++|+.||++|+++|++||+        |||+|||||.|||+. +++.......  .....
T Consensus         3 ~~f~~f~~~~~K~Y~~~~e~~~r~~if~~N~~~I~~~n~--------~~N~fsDlt~eEf~~~~~~~~~~~~~--~~~~~   72 (302)
T d1xkga1           3 KTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGG--------AINHLSDLSLDEFKNRFLMSAEAFEH--LKTQF   72 (302)
T ss_dssp             CSHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHCC--------CCCTTTTSCHHHHHHHHSBCHHHHHH--HHHHH
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhcc--------CCCcCCCCCHHHHHHHhcCCCccccc--ccccC
Confidence            359999999999999999999999999999999999994        899999999999954 4432211100  00000


Q ss_pred             CCCCCCCccchhhhhhhcccCCCCCCCCccccccccCccccccCCCcceeeecccchhhHHhhhhhcccchhhhhhhcc
Q psy11694        122 QAPFSSNQTDTEMRAFQFNSLRHGDDLPEAFDWRAEGVISKVKEQGKCACCWAFSAVGVVEAMHAIQGNNLTELSVQHH  200 (655)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWr~~g~Vt~VkdQg~c~~~~a~~~~~~~e~~~~i~~~~l~~~~~q~~  200 (655)
                      .....            .........+|++||||++|+||||||||.|||||||++++++|+.+++..+.++.+|+|+.
T Consensus        73 ~~~~~------------~~~~~~~~~~P~~~DwR~~g~vtpVkdQG~CGsCwAfa~~~~lE~~~~i~~~~~~~lS~q~l  139 (302)
T d1xkga1          73 DLNAE------------TNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQEL  139 (302)
T ss_dssp             C-----------------CBCCCCSCCCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHH
T ss_pred             CCCcc------------ccccccCCCCCcceeccccCccccceeccccceehhhhhHHhHHHHHHHhcCCcccchhHHH
Confidence            00000            00111224799999999999999999999999999999999999999999999999998874

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.8e-28  Score=235.64  Aligned_cols=150  Identities=35%  Similarity=0.764  Sum_probs=120.5

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHH
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEE  576 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  576 (655)
                      ...+||+|++++|...+.||.||.+..+++++.+..+++.|.++||.....  .|.... ......+..+.. ...+.++
T Consensus        44 ~~~~~S~q~~~~c~~~~~gc~G~~~~~~~~~~~~~g~~~~e~~~py~~~~~--~~~~~~-~~~~~~~~~~~~-~~~~~~~  119 (214)
T d1m6da_          44 TLLSLSEQELLDCDKMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQ--SCQFSA-EKAKVYIQDSVE-LSQNEQK  119 (214)
T ss_dssp             CCCCBCHHHHHHHCSSSCTTBCCCHHHHHHHHHHHTCBCBTTTSCCCSSCC--CCCCCG-GGCCBCCSEEEE-CCSCHHH
T ss_pred             CCcccCHHHhccccccCCccCCCcchhhHHHHHhCCcccccccccccCccC--cccccc-cccceeeecccc-cccCHHH
Confidence            457899999999998889999999999999999986689999999998765  333322 222223333333 3458899


Q ss_pred             HHHHHHhCCCEEEEEEccccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCCCC
Q psy11694        577 MKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVML  655 (655)
Q Consensus       577 ik~~i~~~GPV~~~~~~~~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy~  655 (655)
                      ||++|+++|||++++.+.+++.+..|+.......++...++|||+|||||++.     +.+|||||||||++|||+|||
T Consensus       120 ik~~i~~~gpv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~HaV~iVGyg~~~-----~~~ywivkNSWG~~WGd~Gy~  193 (214)
T d1m6da_         120 LAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRS-----DVPFWAIKNSWGTDWGEKGYY  193 (214)
T ss_dssp             HHHHHHHHCCEEEEECTHHHHHCCSSEECCCGGGSCTTCCCEEEEEEEEEEET-----TEEEEEEECSBCTTSTBTTEE
T ss_pred             HHHHHHhcCCeEEEEEEEehhhccCCccccccCCCCCcccceeEEEEcccccC-----CceEEEEECCCCCccccCCEE
Confidence            99999999999999999877777777765434455666789999999999876     678999999999999999997

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.1e-28  Score=246.67  Aligned_cols=146  Identities=29%  Similarity=0.596  Sum_probs=116.9

Q ss_pred             ccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCC-------CCCC-----CcCCceEEEee
Q psy11694        498 LSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERG-------CLVG-----EEEGFKVKVKE  565 (655)
Q Consensus       498 ~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~-------c~~~-----~~~~~~~~~~~  565 (655)
                      ...||+|+|++|... .+|.||++..+++++.++ |+++|++|||...+....       |...     ......+++.+
T Consensus        87 ~~~lS~q~l~~~~~~-~~c~GG~~~~a~~~~~~~-G~~~e~~~PY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  164 (275)
T d1deua_          87 STLLSVQNVIDCGNA-GSCEGGNDLSVWDYAHQH-GIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGD  164 (275)
T ss_dssp             CCCBCHHHHHHHSSS-EETBEECHHHHHHHHHHT-CBCBGGGSCCCSSCCCCCHHHHSEEEEETTEEEECSSCCCBCEEE
T ss_pred             ccccchhheeccccc-cccCCcccccccchhhcc-cccccccccccccCCCcccccccCcccccceeeeccceeEEEeCc
Confidence            467999999999653 589999999999999986 999999999997754210       1000     01222345666


Q ss_pred             eEEcCCCCHHHHHHHHHhCCCEEEEEEcc-ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcC
Q psy11694        566 YSRIPYGEEEEMKKWVATRGPLSVGMNAN-GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNS  644 (655)
Q Consensus       566 ~~~~~~~~~~~ik~~i~~~GPV~~~~~~~-~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNS  644 (655)
                      |..+.  +.+.||++|+++|||+++|++. +|++|++|||.   ..++...++|||+|||||+++     +.+|||||||
T Consensus       165 ~~~~~--~~e~ik~~l~~~GPv~v~~~~~~~f~~y~~Gi~~---~~~~~~~~~HAV~IVGyg~~~-----g~~ywivrNS  234 (275)
T d1deua_         165 YGSLS--GREKMMAEIYANGPISCGIMATERLANYTGGIYA---EYQDTTYINHVVSVAGWGISD-----GTEYWIVRNS  234 (275)
T ss_dssp             EEEEC--SHHHHHHHHHHHCCEEEEECCCHHHHTCCSSEEC---BCCSCCCCCEEEEEEEEEEET-----TEEEEEEECS
T ss_pred             eeecC--cHHHHHHHHHhCCCcEEEEEeccchhccCCCccc---CccccccCCeEEEEEEEeccC-----CcEEEEEECC
Confidence            66664  6789999999999999999994 67789999996   345556789999999999876     6789999999


Q ss_pred             CCCCcCCCCCC
Q psy11694        645 WGSDWGEKVML  655 (655)
Q Consensus       645 WG~~WGe~Gy~  655 (655)
                      ||++|||+|||
T Consensus       235 WG~~WGd~Gyf  245 (275)
T d1deua_         235 WGEPWGERGWL  245 (275)
T ss_dssp             BCTTSTBTTEE
T ss_pred             CCCCcccCCEE
Confidence            99999999997

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.6e-27  Score=231.38  Aligned_cols=149  Identities=42%  Similarity=0.819  Sum_probs=125.1

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHH
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEE  576 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  576 (655)
                      ...+||+|+|++|.....+|.||....|+++++...++++|..|||.....  .|...+ ......+..+...+..+.++
T Consensus        44 ~~~~lS~q~l~~c~~~~~~c~G~~~~~a~~~~~~~g~~~~~~~y~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~  120 (215)
T d2r6na1          44 KLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEE--SCMYNP-TGKAAKCRGYREIPEGNEKA  120 (215)
T ss_dssp             CCCCBCHHHHHHHCTTSCGGGCCCHHHHHHHHHHHTCEEBTTTSCCCSSCC--CCCCCG-GGEEECCCEEEECCTTCHHH
T ss_pred             CCccchhhhhhhcccccCccCCcchhhHHHHHHhcCccccccCCCcccccc--cccccc-cccceeecceeeccccHHHH
Confidence            457899999999988788999999999999999986689999999987655  333322 33456678888888889999


Q ss_pred             HHHHHHhCCCEEEEEEc-c-ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCCC
Q psy11694        577 MKKWVATRGPLSVGMNA-N-GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVM  654 (655)
Q Consensus       577 ik~~i~~~GPV~~~~~~-~-~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy  654 (655)
                      ||++|+++|||++.+.+ . .|..|++||+.  ...++...++|||+|||||++.     +.+|||||||||++|||+||
T Consensus       121 ik~~~~~~g~v~~~~~~~~~~f~~y~~gi~~--~~~~~~~~~~Hav~iVGy~~~~-----~~~ywivrNSWG~~WGe~Gy  193 (215)
T d2r6na1         121 LKRAVARVGPVSVAIDASLTSFQFYSKGVYY--DESCNSDNLNHAVLAVGYGIQK-----GNKHWIIKNSWGENWGNKGY  193 (215)
T ss_dssp             HHHHHHHTCCEEEEECCCSHHHHTCCSSEEC--CTTCCTTCCCEEEEEEEEEEET-----TEEEEEEECSBCTTSTBTTE
T ss_pred             HHHhhcccccEEEEEEeeechhcccCCCccc--CCCCCCCCCCeeEEEEEeeccC-----CCcEEEEEcCCCCCcccCCe
Confidence            99999999999998875 3 46689999997  3455677899999999999986     56799999999999999999


Q ss_pred             C
Q psy11694        655 L  655 (655)
Q Consensus       655 ~  655 (655)
                      |
T Consensus       194 ~  194 (215)
T d2r6na1         194 I  194 (215)
T ss_dssp             E
T ss_pred             E
Confidence            7

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=99.93  E-value=3.8e-27  Score=231.35  Aligned_cols=146  Identities=35%  Similarity=0.681  Sum_probs=119.5

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHH
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEE  576 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  576 (655)
                      ...+||+|+|++|.....+|.||+...++++++.. |+++|++|||.....  .|...........+..+..+....++.
T Consensus        44 ~~~~lS~q~l~~~~~~~~~~~G~~~~~~~~~~~~~-G~~~e~~yPy~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (216)
T d1ppoa_          44 KLVELSEQELVDCERRSHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQG--TCRAKQVGGPIVKTSGVGRVQPNNEGN  120 (216)
T ss_dssp             CCCCBCHHHHHHHCSSSCTTBCCCHHHHHHHHHHH-CBCBTTTSCCCSSCC--CCCGGGCCSCCBCCCEEEECCSSCHHH
T ss_pred             CCCCccHHHHhhhhhccCccccccccccccccccc-CccccccCCcccccc--ccccccccccceeeccceeecccHHHH
Confidence            46789999999998888899999999999999996 999999999998766  565444344445556666777777888


Q ss_pred             HHHHHHhCCCEEEEEEcc-c-cccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCCC
Q psy11694        577 MKKWVATRGPLSVGMNAN-G-LFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVM  654 (655)
Q Consensus       577 ik~~i~~~GPV~~~~~~~-~-~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy  654 (655)
                      +|++|. .|||++++.+. + +..|++|++.   ..+ ...++|||+|||||++.     +.+|||||||||++|||+||
T Consensus       121 ~~~~l~-~gpv~~~~~~~~~~~~~y~~g~~~---~~~-~~~~~Hav~iVGyg~~~-----~~~ywivrNSWG~~WGd~Gy  190 (216)
T d1ppoa_         121 LLNAIA-KQPVSVVVESKGRPFQLYKGGIFE---GPC-GTKVDHAVTAVGYGKSG-----GKGYILIKNSWGTAWGEKGY  190 (216)
T ss_dssp             HHHHHH-HSCEEEEECCCSHHHHHCCSSEEC---CSC-CSCCCEEEEEEEEEEET-----TEEEEEEECSBCSSSTBTTE
T ss_pred             HHHHHh-hCCCceeeeeccccceecCCcccc---ccc-cccCCcEEEEEeccccC-----CCceEEEECCCCCCcccCCE
Confidence            888775 68999999983 3 4579999996   222 24479999999999876     67899999999999999999


Q ss_pred             C
Q psy11694        655 L  655 (655)
Q Consensus       655 ~  655 (655)
                      |
T Consensus       191 ~  191 (216)
T d1ppoa_         191 I  191 (216)
T ss_dssp             E
T ss_pred             E
Confidence            7

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=99.93  E-value=9.9e-27  Score=228.73  Aligned_cols=146  Identities=39%  Similarity=0.730  Sum_probs=118.0

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHH
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEE  576 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  576 (655)
                      ...+||+|+|++|...+.||.|+.+..++.++++. |+++|.++||......  |...........+..+..++..+++ 
T Consensus        44 ~~~~lS~q~l~~c~~~~~g~~g~~~~~~~~~~~~~-g~~~e~~~py~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-  119 (218)
T d1yala_          44 NLLELSEQELVDCDKHSYGCKGGYQTTSLQYVANN-GVHTSKVYPYQAKQYK--CRATDKPGPKVKITGYKRVPSNCET-  119 (218)
T ss_dssp             CCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHH-CBCBTTTSCCCSSCCC--CCGGGCCSCCBCCSEEEECCSSBHH-
T ss_pred             CCcccchhhhhccccccCCCcccccchhhhhhhhh-cccccccCCcccccCc--cccccccccceeeccceEeCCccHH-
Confidence            45689999999999888999999999999999997 9999999999987652  3222224445667788888765555 


Q ss_pred             HHHHHHhCCCEEEEEEc-cc-cccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCCC
Q psy11694        577 MKKWVATRGPLSVGMNA-NG-LFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVM  654 (655)
Q Consensus       577 ik~~i~~~GPV~~~~~~-~~-~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy  654 (655)
                      ++++++.+|||++++.+ .+ +..|++|||.   ..+. ..++|||+|||||+++     +++|||||||||++|||+||
T Consensus       120 ~~~~~~~~~pv~~~~~~~~~~~~~y~~Giy~---~~~~-~~~~Hav~IVGyg~~~-----g~~ywivkNSWG~~WGd~Gy  190 (218)
T d1yala_         120 SFLGALANQPLSVLVEAGGKPFQLYKSGVFD---GPCG-TKLDHAVTAVGYGTSD-----GKNYIIIKNSWGPNWGEKGY  190 (218)
T ss_dssp             HHHHHHTTSCEEEEECCCSHHHHTCCSSEEC---CSCC-SCCCEEEEEEEEEEET-----TEEEEEEECSBCTTSTBTTE
T ss_pred             HHHHHHHhCCceEEEEecccchhhcccceee---eccc-ccCCcEEEEEEeeccC-----CceEEEEECCCCCCcccCCE
Confidence            45556688999999998 33 4579999997   2222 3579999999999876     67899999999999999999


Q ss_pred             C
Q psy11694        655 L  655 (655)
Q Consensus       655 ~  655 (655)
                      |
T Consensus       191 ~  191 (218)
T d1yala_         191 M  191 (218)
T ss_dssp             E
T ss_pred             E
Confidence            7

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

Probab=99.92  E-value=2.6e-26  Score=225.23  Aligned_cols=146  Identities=37%  Similarity=0.752  Sum_probs=116.1

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHH
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEE  576 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  576 (655)
                      ...+||+|+|++|.....||.||++..|++|+.++.++..|++|||.....  .|.... .....++..|..+...+++ 
T Consensus        44 ~~~~lS~q~l~~c~~~~~gc~Gg~~~~a~~y~~~~g~~~~e~~~p~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~-  119 (216)
T d1cqda_          44 DLISLSEQQLVDCTTANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDG--ICNSTV-NAPVVSIDSYENVPSHNEQ-  119 (216)
T ss_dssp             CCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHHTSBCBTTTSCCCSSCC--CCCSSS-CCCSBCCSEEEECCSSCHH-
T ss_pred             CCccccHHHhhhcccccCCCCCcchHHHHHHHHhcCCccccccCCcccccc--cccccc-CCceeEeeeEEecCCcchh-
Confidence            456899999999998888999999999999999986677799999998765  232222 2334566777777665554 


Q ss_pred             HHHHHHhCCCEEEEEEcc--ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCCC
Q psy11694        577 MKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVM  654 (655)
Q Consensus       577 ik~~i~~~GPV~~~~~~~--~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy  654 (655)
                      ++..++..+||++++.+.  .+..|++|||.    .+....++|||+|||||++.     +++|||||||||++|||+||
T Consensus       120 ~~~~~~~~~pv~~~~~~~~~~~~~y~~gi~~----~~~~~~~~Hav~iVGyg~~~-----~~~~wiv~NSWG~~WGd~Gy  190 (216)
T d1cqda_         120 SLQKAVANQPVSVTMDAAGRDFQLYRSGIFT----GSCNISANHALTVVGYGTEN-----DKDFWIVKNSWGKNWGESGY  190 (216)
T ss_dssp             HHHHHHTTSCEEEEECCCSHHHHTCCSSEEC----CCCCCCCCEEEEEEEEEEET-----TEEEEEEECSBCTTSTBTTE
T ss_pred             hHHHHhhcCCcceeeeeecccccccccCccc----ccccccCCcceeeecccccc-----CCceEEEECCCCCccccCCE
Confidence            555566788999998883  45679999996    33455689999999999876     67899999999999999999


Q ss_pred             C
Q psy11694        655 L  655 (655)
Q Consensus       655 ~  655 (655)
                      |
T Consensus       191 ~  191 (216)
T d1cqda_         191 I  191 (216)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.92  E-value=5.4e-26  Score=222.86  Aligned_cols=147  Identities=32%  Similarity=0.803  Sum_probs=119.7

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHc--CCCCCCCCcccCCCCCCCCCCCCC--cCCceEEEeeeEEcCCC
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDN--GGVVSDQAYPYKASESERGCLVGE--EEGFKVKVKEYSRIPYG  572 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~--~Gv~~e~~yPY~~~~~~~~c~~~~--~~~~~~~~~~~~~~~~~  572 (655)
                      ...+||+|+|++|...+.+|.|+....++.++...  .|++++.+|||.....  .|....  ......++..+..+. .
T Consensus        44 ~~~~ls~q~l~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ypy~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~  120 (215)
T d1me4a_          44 PLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEG--ISPPCTTSGHTVGATITGHVELP-Q  120 (215)
T ss_dssp             CCCCBCHHHHHHHCTTSCGGGCCCHHHHHHHHHHHSTTEEEBTTTSCCCCTTS--CCCCCCCSSCCEEEECCEEEECC-S
T ss_pred             CCcccchhhhhhhhcCCCCCCCCcccccceeeeeccCCccccCcccCcccccc--ccccccccccccceEeeeeeecc-c
Confidence            35689999999999888899999888888877653  3689999999998765  233222  123345667777765 4


Q ss_pred             CHHHHHHHHHhCCCEEEEEEccccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCC
Q psy11694        573 EEEEMKKWVATRGPLSVGMNANGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK  652 (655)
Q Consensus       573 ~~~~ik~~i~~~GPV~~~~~~~~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~  652 (655)
                      +.+.||++|+++|||++++.+..|+.|.++++.    .+....++|||+|||||++.     +++|||||||||++|||+
T Consensus       121 ~~~~ik~~i~~~gpv~~~~~~~~~~~~~~~~~~----~~~~~~~~Hav~IVGyg~~~-----~~~ywivrNSWG~~WGd~  191 (215)
T d1me4a_         121 DEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMT----SCVSEQLDHGVLLVGYNDSA-----AVPYWIIKNSWTTQWGEE  191 (215)
T ss_dssp             CHHHHHHHHHHHCCEEEEECCTTGGGCCSSEEC----SCCCSCCCEEEEEEEEESSS-----SSCEEEEECSBCTTSTBT
T ss_pred             cHHHHHHHHHhcCceeEEEEeeeeccccccccc----CCccccceeEEEEEEccccC-----CceEEEEEcCCCCCcccC
Confidence            889999999999999999999889999999985    33445579999999999986     778999999999999999


Q ss_pred             CCC
Q psy11694        653 VML  655 (655)
Q Consensus       653 Gy~  655 (655)
                      |||
T Consensus       192 Gy~  194 (215)
T d1me4a_         192 GYI  194 (215)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            997

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.6e-26  Score=224.33  Aligned_cols=147  Identities=43%  Similarity=0.846  Sum_probs=123.1

Q ss_pred             ccccccccccCCCC---CCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCH
Q psy11694        498 LSRLATEKLVDCDM---SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEE  574 (655)
Q Consensus       498 ~~~ls~q~l~~C~~---~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~  574 (655)
                      ...+|+|++++|..   .+.||.||++..|+.++.+..|++++.+|||.....  .|.... .....++..|..+....+
T Consensus        45 ~~~~S~~~~~~~~~~~~~~~gc~gg~~~~a~~~~~~~~g~~~~~~~p~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~  121 (217)
T d2h7ja1          45 LVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ--KCQYDS-KYRAATCSKYTELPYGRE  121 (217)
T ss_dssp             CCCBCHHHHHHHSCGGGTCCTTBCCCHHHHHHHHHHHTCEEBTTTSCCCSSCC--CCCCCG-GGEEECCCEEEECCTTCH
T ss_pred             CCcccHHHhhhhhcccccCCCCCCCcccceeeehhhcccccccccCCCccccc--cccccc-ccccceeeeeeccCccHH
Confidence            46789999999964   367999999999999988888999999999998766  333322 445667788888888899


Q ss_pred             HHHHHHHHhCCCEEEEEEc--cccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCC
Q psy11694        575 EEMKKWVATRGPLSVGMNA--NGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK  652 (655)
Q Consensus       575 ~~ik~~i~~~GPV~~~~~~--~~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~  652 (655)
                      ..||++|++.|||++++..  .+|+.|++||+.   ...+...++|||+|||||++.     +++|||||||||++|||+
T Consensus       122 ~~~~~~l~~~g~v~~~~~~~~~~f~~~~~gi~~---~~~~~~~~~Hav~iVGy~~~~-----~~~ywivrNSWG~~WG~~  193 (217)
T d2h7ja1         122 DVLKEAVANKGPVSVGVDARHPSFFLYRSGVYY---EPSCTQNVNHGVLVVGYGDLN-----GKEYWLVKNSWGHNFGEE  193 (217)
T ss_dssp             HHHHHHHHHTCCEEEEECCCSHHHHTCCSSCBC---CTTCCSCCCEEEEEEEEEEET-----TEEEEEEECSBCTTSTBT
T ss_pred             HHHHHHhhcCceEEEEEeeehhhhcccCCccee---CCCCCCCCCeEEEEEecccCC-----CceEEEEEcCCCCCcccC
Confidence            9999999999999999876  346688999996   334456689999999999886     678999999999999999


Q ss_pred             CCC
Q psy11694        653 VML  655 (655)
Q Consensus       653 Gy~  655 (655)
                      |||
T Consensus       194 Gy~  196 (217)
T d2h7ja1         194 GYI  196 (217)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            997

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.3e-25  Score=219.06  Aligned_cols=153  Identities=39%  Similarity=0.763  Sum_probs=123.8

Q ss_pred             cccccccccccCCCC--CCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCH
Q psy11694        497 KLSRLATEKLVDCDM--SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEE  574 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~--~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~  574 (655)
                      ...+||+|+|++|..  .+.+|.||++..|++++.+..+++++.+|||.....  .|.... .....++..+.......+
T Consensus        44 ~~~~lS~~~~~~~~~~~~~~~~~gg~~~~a~~~~~~~g~~~~~~~~p~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~  120 (221)
T d1fh0a_          44 KLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDE--ICKYRP-ENSVAQDTGFTVVAPGKE  120 (221)
T ss_dssp             CCCCBCHHHHHHHCGGGTCCGGGCCCHHHHHHHHHHHTCEEBTTTSCCCSSCC--CCCCCG-GGEEECCSCEEECCTTCH
T ss_pred             CCcccccceeEEeccccCCcccCCCchhhhhhhhhhcCccccccCcCcccccc--cccccc-ccccccceeeeecCCcHH
Confidence            346899999999964  367899999999999999986689999999998766  233222 334456677777777788


Q ss_pred             HHHHHHHHhCCCEEEEEEcc--ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCC
Q psy11694        575 EEMKKWVATRGPLSVGMNAN--GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK  652 (655)
Q Consensus       575 ~~ik~~i~~~GPV~~~~~~~--~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~  652 (655)
                      ..+|++|+++|||++++.+.  .|..|++|++.  ...+....++|||+|||||.+.. .+.+.+|||||||||++|||+
T Consensus       121 ~~~~~~~~~~~pv~~~~~~~~~~~~~y~~g~~~--~~~~~~~~~~ha~~ivG~g~~~~-~~~~~~ywivrNSWG~~WGd~  197 (221)
T d1fh0a_         121 KALMKAVATVGPISVAMDAGHSSFQFYKSGIYF--EPDCSSKNLDHGVLVVGYGFEGA-NSDNSKYWLVKNSWGPEWGSN  197 (221)
T ss_dssp             HHHHHHHHHTCCEEEEECCCSHHHHTCCSSEEC--CTTCCSSCCCEEEEEEEEEESSS-CTTSSEEEEEECSBCTTSTBT
T ss_pred             HHHHHHHHhcCCceEEEEeccccccccCCCccc--cccccccCCcccEEEeeEeccCc-CCCCceEEEEEeCCCCCcccC
Confidence            99999999999999999984  36689999987  34455566899999999997642 234778999999999999999


Q ss_pred             CCC
Q psy11694        653 VML  655 (655)
Q Consensus       653 Gy~  655 (655)
                      |||
T Consensus       198 Gy~  200 (221)
T d1fh0a_         198 GYV  200 (221)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            997

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.1e-25  Score=226.51  Aligned_cols=149  Identities=26%  Similarity=0.526  Sum_probs=111.2

Q ss_pred             ccccccccccCCCC--CCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCC---C-----------CCCCCCCcC----
Q psy11694        498 LSRLATEKLVDCDM--SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASES---E-----------RGCLVGEEE----  557 (655)
Q Consensus       498 ~~~ls~q~l~~C~~--~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~---~-----------~~c~~~~~~----  557 (655)
                      ..+||+|+|++|..  .+.||.||++..|+.++.+. |+++|..|||.....   .           .+|......    
T Consensus        52 ~~~lS~~~l~~~~~~~~~~gc~gg~~~~a~~~~~~~-G~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (254)
T d1gmya_          52 SVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCS  130 (254)
T ss_dssp             CCCBCHHHHHHHSGGGGBCGGGCBCHHHHHHHHHHT-CBCBCCSTTCCCSSSCCCSCCCBSSSCCSSCBCCSCCCCCCCC
T ss_pred             ccccchHHHHhhccccCCCCCCCCcHHHHHHHHHHc-CccccccccccccccccccccccccccCccCccccccCCcccc
Confidence            35799999999953  46799999999999999986 999999998764211   0           011110000    


Q ss_pred             -------Cce---EEEeeeEEc-CCCCHHHHHHHHHhCCCEEEEEEc-cccccccCCeeecCCCCCCCcccCeEEEEEEE
Q psy11694        558 -------GFK---VKVKEYSRI-PYGEEEEMKKWVATRGPLSVGMNA-NGLFYYSGGVIDLNQRLCNPKAQNHALIIVGY  625 (655)
Q Consensus       558 -------~~~---~~~~~~~~~-~~~~~~~ik~~i~~~GPV~~~~~~-~~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGy  625 (655)
                             ...   .+...+..+ ....++.||++|+++|||++++.+ .+|..|.+||+.   ..+....++|||+||||
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~gpv~~~~~~~~~f~~y~~gi~~---~~~~~~~~~Hav~IVGy  207 (254)
T d1gmya_         131 KICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQ---HVTGEMMGGHAIRILGW  207 (254)
T ss_dssp             CSCCTTCCSCHHHHCBCBSCCEECCSCHHHHHHHHHHHCCEEEEEEEEGGGTTCCSSEEC---CCSCCEEEEEEEEEEEE
T ss_pred             ccccCCcccceeeeeeeeeeeeccccHHHHHHHHHHHcCCEEEEEEeechhhhccCCccc---cccccccccEEEEEEEE
Confidence                   000   011111111 124689999999999999999999 678899999996   45566778999999999


Q ss_pred             ecccCCCCCCCCEEEEEcCCCCCcCCCCCC
Q psy11694        626 GEEEKKDGTSIPYWIVKNSWGSDWGEKVML  655 (655)
Q Consensus       626 g~~~~~~~~~~~ywivrNSWG~~WGe~Gy~  655 (655)
                      |+++     +.+|||||||||++|||+|||
T Consensus       208 g~~~-----g~~ywIvkNSWG~~WGd~GYf  232 (254)
T d1gmya_         208 GVEN-----GTPYWLVANSWNTDWGDNGFF  232 (254)
T ss_dssp             EEET-----TEEEEEEECSBCTTSTBTTEE
T ss_pred             eccC-----CceEEEEEcCCCCCcCCCceE
Confidence            9876     678999999999999999997

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

Probab=99.90  E-value=2.2e-25  Score=218.89  Aligned_cols=147  Identities=37%  Similarity=0.680  Sum_probs=112.5

Q ss_pred             cccccccccccCCCC--CCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCH
Q psy11694        497 KLSRLATEKLVDCDM--SNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEE  574 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~--~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~  574 (655)
                      ...+||+|+|++|..  .+.+|.|+....++.++.++.+++.|.+|||.....  .|...... .......+......+.
T Consensus        44 ~~~~lS~q~~~~c~~~~~~~~~~G~~~~~~~~~~~~~g~v~~e~~yp~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~  120 (218)
T d1aeca_          44 VLISLSEQELIDCGRTQNTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDG--ECNVDLQN-EKYVTIDTYENVPYNN  120 (218)
T ss_dssp             CCCCBCHHHHHHHCCBTTBCTTBCCCHHHHHHHHHHHTCBCBTTTSCCCSSCC--CCCHHHHH-CCCBCCCEEEECCSSC
T ss_pred             CCcchhhhhhhhhccccCCcccCCCcccccceeehhCceecCccccCcccccC--ccceeccc-cccceecccccccccH
Confidence            456899999999975  356889999999999999986699999999998766  33322211 1122223333334577


Q ss_pred             HHHHHHHHhCCCEEEEEEcc-ccc-cccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCC
Q psy11694        575 EEMKKWVATRGPLSVGMNAN-GLF-YYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEK  652 (655)
Q Consensus       575 ~~ik~~i~~~GPV~~~~~~~-~~~-~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~  652 (655)
                      +.||++|+.+|||++++.+. +++ .+.+|++.   . +....++|||+|||||++.     +.+|||||||||++|||+
T Consensus       121 ~~~~~~~~~~gpv~v~~~~~~~~~~~~~~g~~~---~-~~~~~~~Hav~iVGyg~~~-----~~~ywivrNSWG~~WGd~  191 (218)
T d1aeca_         121 EWALQTAVTYQPVSVALDAAGDAFKQYSSGIFT---G-PCGTAIDHAVTIVGYGTEG-----GIDYWIVKNSWDTTWGEE  191 (218)
T ss_dssp             HHHHHHHHHHSCEEEEECCCSHHHHHCCSSEEC---C-SCCSSCCEEEEEEEEEEET-----TEEEEEEECSBCTTSTBT
T ss_pred             HHHHHHHhhcCCceeEEEecchhhhcCCCCccc---c-cccccCCceeEEEEEeccC-----CeEEEEEEcCCCCCcccC
Confidence            88999999999999999984 444 46777775   2 2334579999999999876     678999999999999999


Q ss_pred             CCC
Q psy11694        653 VML  655 (655)
Q Consensus       653 Gy~  655 (655)
                      |||
T Consensus       192 Gy~  194 (218)
T d1aeca_         192 GYM  194 (218)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            997

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=99.90  E-value=5.1e-25  Score=217.13  Aligned_cols=148  Identities=40%  Similarity=0.773  Sum_probs=117.7

Q ss_pred             cccccccccccCCCCC-CCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHH
Q psy11694        497 KLSRLATEKLVDCDMS-NGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEE  575 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~-~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~  575 (655)
                      ...+||+|+|++|... ..+|.||....|+.++.+..|++.|.++||.....  .|..........++..+......+.+
T Consensus        45 ~~~~~S~q~l~~c~~~~~~~~~G~~~~~a~~~~~~~g~~~~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (224)
T d1s4va_          45 KLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDG--TCDVSKENAPAVSIDGHENVPENDEN  122 (224)
T ss_dssp             CCCCBCHHHHHHHCCSSCCTTBCBCHHHHHHHHHHHTCBCBTTTSCCCSSCC--CCCHHHHTCCCBCCCEEEECCTTCHH
T ss_pred             CCCccchhhhhhccccccccCCCCchhhHhhhHhhcCceeecccccccCcCC--ccccccccccceeecccccccCccHH
Confidence            4678999999999764 56788999999999999987899999999987765  23222223445567778888888999


Q ss_pred             HHHHHHHhCCCEEEEEEc--cccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCC
Q psy11694        576 EMKKWVATRGPLSVGMNA--NGLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKV  653 (655)
Q Consensus       576 ~ik~~i~~~GPV~~~~~~--~~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~G  653 (655)
                      .||++|++ +||++++.+  ..|..|.+|+|.    .+....++|||+|||||++.+    +++|||||||||++|||+|
T Consensus       123 ~~k~~l~~-~pv~~~~~~~~~~~~~y~~g~~~----~~~~~~~~Hav~iVGy~~~~~----g~~ywiikNSWG~~WG~~G  193 (224)
T d1s4va_         123 ALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFT----GSCGTELDHGVAIVGYGTTID----GTKYWTVKNSWGPEWGEKG  193 (224)
T ss_dssp             HHHHHHHH-SCEEEEECCCSHHHHTCCSSEEC----CCCCCCCCEEEEEEEEEECTT----SCEEEEEECSBCTTSTBTT
T ss_pred             HHHHHHhc-CCceEEEEecchhhhhccCCCcc----CcccccCCcceEEEecccccC----CceEEEEEcCCCCccccCc
Confidence            99999976 677777776  346689999996    233445799999999998742    6789999999999999999


Q ss_pred             CC
Q psy11694        654 ML  655 (655)
Q Consensus       654 y~  655 (655)
                      ||
T Consensus       194 y~  195 (224)
T d1s4va_         194 YI  195 (224)
T ss_dssp             EE
T ss_pred             eE
Confidence            96

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

Probab=99.90  E-value=2.6e-24  Score=209.60  Aligned_cols=140  Identities=40%  Similarity=0.759  Sum_probs=112.5

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHH
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEE  576 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  576 (655)
                      ..++||+|+|++|...+.+|.||.+..++.++..+.+++++.++||.....  .|....   ....+..|..+...++..
T Consensus        44 ~~~~lS~q~l~~c~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~p~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~  118 (208)
T d1o0ea_          44 NLISLSEQELVDCDKKNHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQG--PCQAAS---KVVSIDGYNGVPFCNEXA  118 (208)
T ss_dssp             CCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHHTCBCBTTTSCCCSSCC--CCCCCC---CCBCCCEEEECCTTCHHH
T ss_pred             CCCCcCHHHhhhhccCCCCCCCccchhhhhhhhhcCccccccCCCCcccCC--CccCcc---cccccccccccccchhhH
Confidence            456899999999998889999999999999999987789999999988766  565432   345677888888777776


Q ss_pred             HHHHHHhCCCEEEEEEc-c-ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCCC
Q psy11694        577 MKKWVATRGPLSVGMNA-N-GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVM  654 (655)
Q Consensus       577 ik~~i~~~GPV~~~~~~-~-~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy  654 (655)
                      ++.++ ..|||++++.. . .|..|.+|||.   .. ....++|||+|||||+         +|||||||||++|||+||
T Consensus       119 ~~~~~-~~~pv~~~~~~~~~~f~~~~~gi~~---~~-~~~~~~Hav~iVGy~~---------~ywiirNSWG~~WGd~Gy  184 (208)
T d1o0ea_         119 LKQAV-AVQPSTVAIDASSAQFQQYSSGIFS---GP-CGTKLNHGVTIVGYQA---------NYWIVRNSWGRYWGEKGY  184 (208)
T ss_dssp             HHHHH-HHSCEEEEECCCSHHHHTCCSSEEC---CC-CCSCCCEEEEEEEECS---------SEEEEECSBCTTSTBTTE
T ss_pred             HHHHh-hcCCceEEEEecchhhcccccCccc---cc-ccccCCcEEEEEeeec---------ceEEEECCCCCCcccCCe
Confidence            66665 45777777765 3 46679999996   22 2335699999999975         389999999999999999


Q ss_pred             C
Q psy11694        655 L  655 (655)
Q Consensus       655 ~  655 (655)
                      |
T Consensus       185 ~  185 (208)
T d1o0ea_         185 I  185 (208)
T ss_dssp             E
T ss_pred             E
Confidence            7

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

Probab=99.89  E-value=4.1e-24  Score=209.29  Aligned_cols=145  Identities=39%  Similarity=0.791  Sum_probs=113.7

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHH
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEE  576 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  576 (655)
                      ....||+|+|++|.....+|.||....|++++.++.++..+.++||.....  .|...  .....++..|..+....++.
T Consensus        44 ~~~~lS~q~l~~c~~~~~~~~G~~~~~a~~~~~~~g~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~  119 (215)
T d1iwda_          44 QLISLSEQELVDCDTASHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQG--SCKPY--RLRVVSINGFQRVTRNNESA  119 (215)
T ss_dssp             CCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHHTCBCBTTTSCCCSSCC--CCCTT--CCCCBCCCEEEECCTTCHHH
T ss_pred             CCcccChhhheecccCCCCCCCcchhhHHHHHHhcCeeccccCCCcccccc--ccccc--ccceeEeccccccCccHHHH
Confidence            356899999999998888999999999999999986677787888877655  33322  23345777888887766665


Q ss_pred             HHHHHHhCCCEEEEEEc-cccc-cccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCCC
Q psy11694        577 MKKWVATRGPLSVGMNA-NGLF-YYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVM  654 (655)
Q Consensus       577 ik~~i~~~GPV~~~~~~-~~~~-~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy  654 (655)
                      +|. |+..+||.+++.+ .+++ .+.+|++.   .. ....++|||+|||||++.     +++|||||||||++|||+||
T Consensus       120 ~~~-~~~~~pv~~~~~~~~~~~~~~~~g~~~---~~-~~~~~~Hav~iVGyg~~~-----~~~ywiirNSWG~~WGd~Gy  189 (215)
T d1iwda_         120 LQS-AVASQPVSVTVEAAGAPFQHYSSGIFT---GP-CGTAQNHGVVIVGYGTQS-----GKNYWIVRNSWGQNWGNQGY  189 (215)
T ss_dssp             HHH-HHHHSCEEEEECCCSHHHHTCCSSEEC---CC-CCCCCCEEEEEEEEEEET-----TEEEEEEECSBCTTSTBTTE
T ss_pred             HHH-HHhcCCccceeeecchhhhccccCccc---cc-ccccccceEEEEEeecCC-----CceEEEEECCCCcccccCCE
Confidence            555 5567899999888 4444 56888886   22 234579999999999876     67899999999999999999


Q ss_pred             C
Q psy11694        655 L  655 (655)
Q Consensus       655 ~  655 (655)
                      |
T Consensus       190 ~  190 (215)
T d1iwda_         190 I  190 (215)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=99.89  E-value=3.8e-24  Score=208.80  Aligned_cols=142  Identities=31%  Similarity=0.598  Sum_probs=110.6

Q ss_pred             cccccccccccCCCCCCCCCCCCCccchHHHHHHcCCCCCCCCcccCCCCCCCCCCCCCcCCceEEEeeeEEcCCCCHHH
Q psy11694        497 KLSRLATEKLVDCDMSNGGCNGGRMDDALQYIIDNGGVVSDQAYPYKASESERGCLVGEEEGFKVKVKEYSRIPYGEEEE  576 (655)
Q Consensus       497 ~~~~ls~q~l~~C~~~~~gC~GG~~~~a~~~~~~~~Gv~~e~~yPY~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  576 (655)
                      ....||+|++++|.....||.|+.+..|+.++.+. |+++|.++||.....  .|...........+..+......+.+.
T Consensus        44 ~~~~~S~q~~~~c~~~~~g~~g~~~~~a~~~~~~~-g~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (212)
T d1khqa_          44 NLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQR--YCRSREKGPYAAKTDGVRQVQPYNEGA  120 (212)
T ss_dssp             CCCCBCHHHHHHHCTTSCTTBCBCHHHHHHHHHHT-CBCBTTTSCCCSSCC--CCCTTTTCSCSBCCCEEEECCTTCHHH
T ss_pred             CCcccCHHHhhccccccCccccccccccccccccc-cccccccCCcccccC--cccccccccceeeeeeeeeeccccHHH
Confidence            35678999999999888899999999999999996 999999999998765  233222233445566666666666665


Q ss_pred             HHHHHHhCCCEEEEEEc-c-ccccccCCeeecCCCCCCCcccCeEEEEEEEecccCCCCCCCCEEEEEcCCCCCcCCCCC
Q psy11694        577 MKKWVATRGPLSVGMNA-N-GLFYYSGGVIDLNQRLCNPKAQNHALIIVGYGEEEKKDGTSIPYWIVKNSWGSDWGEKVM  654 (655)
Q Consensus       577 ik~~i~~~GPV~~~~~~-~-~~~~y~~Gi~~~~~~~~~~~~~~HaV~iVGyg~~~~~~~~~~~ywivrNSWG~~WGe~Gy  654 (655)
                      ++. +...|||.+++.+ . .|..|++|++..   .. ...++|||+|||||+         +|||||||||++|||+||
T Consensus       121 ~~~-~~~~~pv~~~~~~~~~~f~~~~~g~~~~---~~-~~~~~Hav~iVGyg~---------~ywivrNSWG~~WGd~Gy  186 (212)
T d1khqa_         121 LLY-SIANQPVSVVLEAAGKDFQLYRGGIFVG---PC-GNKVDHAVAAVGYGP---------NYILIKNSWGTGWGENGY  186 (212)
T ss_dssp             HHH-HHHHSCEEEEECCCSHHHHTCCSSEECC---SC-CSCCCEEEEEEEEET---------TEEEEECSBCTTSTBTTE
T ss_pred             HHH-HHhcCCcEEEEEeecchhcccccCcccc---cc-ccccCeEEEecccCC---------cEEEEEcCCCCCcccCCE
Confidence            555 4567888888877 3 466789999862   22 245799999999986         389999999999999999


Q ss_pred             C
Q psy11694        655 L  655 (655)
Q Consensus       655 ~  655 (655)
                      |
T Consensus       187 ~  187 (212)
T d1khqa_         187 I  187 (212)
T ss_dssp             E
T ss_pred             E
Confidence            7

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

Probab=99.76  E-value=8.6e-20  Score=193.71  Aligned_cols=77  Identities=19%  Similarity=0.184  Sum_probs=63.7

Q ss_pred             CCcCCCCCCCccHHHHHHHHHHHHHHHHhc-CCCcCCCHHHHHHcc----------------C------------CCCCC
Q psy11694        308 ISKVKEQGKCACCWAFSAVGVVEAMHAIQG-NSLTELSVQQLVDCD----------------M------------SNGGC  358 (655)
Q Consensus       308 vtpVkdQg~CGsCwAfa~~~~le~~~~i~~-~~~~~lS~q~l~dC~----------------~------------~~~gC  358 (655)
                      .+||+||++-|.||.||+...||..+..+. ...+.||+.+|+--+                .            ....+
T Consensus        66 ~~~vtnQ~~SGrCW~FA~ln~lr~~~~~~~~~~~felSq~Yl~f~dklEKan~fL~~ii~~~~~~~~~R~v~~ll~~~~~  145 (458)
T d3gcba_          66 STPVTNQKSSGRAWLFAATNQLRLNVLSELNLKEFELSQAYLFFYDKLEKANYFLDQIVSSADQDIDSRLVQYLLAAPTE  145 (458)
T ss_dssp             CCSCCBCCBSSCHHHHHHHHHHHHHHHHHTTCSSCCBCHHHHHHHHHHHHHHHHHHHHHHTTTSCTTSHHHHHHHHCTTC
T ss_pred             CCCcccCCCCcccHHHhChHHHHHHHHHHcCCCCeeecHHHHHHhhHHHHHHHHHHHHHHhcCCCcchHHHHHHhhcccC
Confidence            489999999999999999999999987764 467999997765332                1            12358


Q ss_pred             CCCcHHHHHHHHHHcCCCCCCCCCCCC
Q psy11694        359 NGGRMDDALQYIIDNGGVVSDQAYPYK  385 (655)
Q Consensus       359 ~GG~~~~a~~~~~~~~Gi~~e~~yPY~  385 (655)
                      +||....+...|.++ |+++.+.||-+
T Consensus       146 DGG~w~m~~nli~KY-G~VPk~~ypet  171 (458)
T d3gcba_         146 DGGQYSMFLNLVKKY-GLIPKDLYGDL  171 (458)
T ss_dssp             SCBCHHHHHHHHHHH-CCCBGGGSCSC
T ss_pred             CCccHHHHHHHHHHc-CCCcHhhcCCc
Confidence            999999999999888 99999999864

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.4e-18  Score=181.51  Aligned_cols=77  Identities=22%  Similarity=0.336  Sum_probs=63.6

Q ss_pred             CcCCCCCCCccHHHHHHHHHHHHHHHHhcC-CCcCCCHHHHH----------------Hcc----CC----------CCC
Q psy11694        309 SKVKEQGKCACCWAFSAVGVVEAMHAIQGN-SLTELSVQQLV----------------DCD----MS----------NGG  357 (655)
Q Consensus       309 tpVkdQg~CGsCwAfa~~~~le~~~~i~~~-~~~~lS~q~l~----------------dC~----~~----------~~g  357 (655)
                      +||.||++-|.||.||+...|+..+..+.+ +.+.||+.+|+                +..    ..          ...
T Consensus        61 ~~vtnQk~SGrCW~Fa~LN~lR~~~~k~~~~~~felSq~Yl~f~dklEKaN~fL~~ii~~~~~~~~~d~R~v~~ll~~p~  140 (453)
T d2cb5a_          61 KPITNQKSSGRSWIFSCLNVMRLPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLSAFVDTAQRKEPEDGRLVQFLLMNPA  140 (453)
T ss_dssp             SSCCBCCBSSCHHHHHHHHHHHHHHHHHTTCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSHHHHHHHHCTT
T ss_pred             CccccCCCCcccHHHhChHHHHHHHHHHcCCCCeehhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHhhCCC
Confidence            799999999999999999999999887644 67999997765                221    11          235


Q ss_pred             CCCCcHHHHHHHHHHcCCCCCCCCCCCCC
Q psy11694        358 CNGGRMDDALQYIIDNGGVVSDQAYPYKA  386 (655)
Q Consensus       358 C~GG~~~~a~~~~~~~~Gi~~e~~yPY~~  386 (655)
                      ++||....+...|.++ |+++.++||-+.
T Consensus       141 ~DGGqw~m~~nli~KY-GvVPk~~~pet~  168 (453)
T d2cb5a_         141 NDGGQWDMLVNIVEKY-GVIPKKCFPESY  168 (453)
T ss_dssp             CSCBCHHHHHHHHHHH-CCCBGGGSCCCT
T ss_pred             CCCcchHHHHHHHHHc-CcccHhhCCCCC
Confidence            8999999999999888 999999999643

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

Probab=98.10  E-value=1.9e-06  Score=90.26  Aligned_cols=73  Identities=21%  Similarity=0.306  Sum_probs=56.3

Q ss_pred             eEEcCCCC-HHHHHHHHhhCCCeEEEEEcCCcccccccEEe---------------------------CCceE--EcC--
Q psy11694        408 YSRIPYGE-EEEMKKWVATRGPLSVGMNANGLFYYSGGVID---------------------------LNQRL--YGT--  455 (655)
Q Consensus       408 ~~~v~~~~-~~~ik~~l~~~gPV~v~i~~~~~~~Y~~Gi~~---------------------------~~Hav--yg~--  455 (655)
                      |..++-.. .+.+..+|..+.||..+-++..++..+.||..                           .+|||  .|.  
T Consensus       304 y~Nvp~d~lk~~~~~sL~~g~pVwfgcDV~k~f~~k~Gi~d~~~~~~~~~~~~~~~~K~~Rl~~~es~~tHAM~ltGv~~  383 (458)
T d3gcba_         304 YLNVDNETLSKLVVKRLQNNKAVFFGSHTPKFMDKKTGVMDIELWNYPAIGYNLPQQKASRIRYHESLMTHAMLITGCHV  383 (458)
T ss_dssp             EEECCHHHHHHHHHHHHHTTCCEEEEECTTTTEETTTTEECTTSBCGGGGTCCCCCCHHHHHHTTSCCCCEEEEEEEEEE
T ss_pred             EeecCHHHHHHHHHHHHhcCCcEEEEecccccccccccccccccccccccCCCcccCHHHHHHhCCCCCCeeEEEEEEEE
Confidence            44454321 23455667888999999999988888888865                           68999  442  


Q ss_pred             ---Cc--cEEEEecCCCCccCCCceEEecc
Q psy11694        456 ---SI--PYWIVKNSWGSDWGEKVEDKVGS  480 (655)
Q Consensus       456 ---g~--~yWivkNSWG~~WGe~Gy~~i~~  480 (655)
                         +.  .||+|+||||+++|++||+.|+.
T Consensus       384 D~~g~~~~~w~VeNSWG~~~g~~Gy~~msd  413 (458)
T d3gcba_         384 DETSKLPLRYRVENSWGKDSGKDGLYVMTQ  413 (458)
T ss_dssp             CTTTCSEEEEEEECSBCTTSTBTTEEEEEH
T ss_pred             cCCCCccceEEEEeccCCCCCCCceEEecH
Confidence               32  59999999999999999999964

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=3.9e-05  Score=79.67  Aligned_cols=73  Identities=21%  Similarity=0.333  Sum_probs=55.8

Q ss_pred             eEEcCCCC-HHHHHHHHhhCCCeEEEEEcCCcccccccEEe-----------------------------CCceE--EcC
Q psy11694        408 YSRIPYGE-EEEMKKWVATRGPLSVGMNANGLFYYSGGVID-----------------------------LNQRL--YGT  455 (655)
Q Consensus       408 ~~~v~~~~-~~~ik~~l~~~gPV~v~i~~~~~~~Y~~Gi~~-----------------------------~~Hav--yg~  455 (655)
                      |..++-.. .+.+..+|..+-||..+-++..++.-+.||.+                             .+|||  .|.
T Consensus       299 y~Nvp~d~l~~~~~~sL~~g~~VwfgcDV~k~~~~k~Gv~d~~~~d~~~~fg~~~~~m~K~~Rl~y~es~~tHAM~ltGv  378 (453)
T d2cb5a_         299 YNNQPIDFLKKMVAASIKDGEAVWFGCDVGKHFNSKLGLSDMNLYDHELVFGVSLKNMNKAERLTFGESLMTHAMTFTAV  378 (453)
T ss_dssp             EEECCHHHHHHHHHHHHHTTCCEEEEECTTTTEETTTTEECTTSBCHHHHHSCCSCSSCHHHHHHTTSCCCCEEEEEEEE
T ss_pred             EEecCHHHHHHHHHHHHhcCCcEEEEcccchhcchhccccccccccccccccCCcccCCHHHHHHhcCcCCCceEEEEEE
Confidence            44454311 24456677778899999999987777888765                             68999  442


Q ss_pred             -------Cc-cEEEEecCCCCccCCCceEEecc
Q psy11694        456 -------SI-PYWIVKNSWGSDWGEKVEDKVGS  480 (655)
Q Consensus       456 -------g~-~yWivkNSWG~~WGe~Gy~~i~~  480 (655)
                             |. .+|+|+||||++-|++||+.|+.
T Consensus       379 ~l~dd~~G~~~~w~VENSWG~~~g~kGy~~Msd  411 (453)
T d2cb5a_         379 SEKDDQDGAFTKWRVENSWGEDHGHKGYLCMTD  411 (453)
T ss_dssp             EECTTSCSCEEEEEEECSBCTTSTBTTEEEEEH
T ss_pred             ecccccCCCEeEEEEEccccCcCCCCceEEecH
Confidence                   44 69999999999999999999974