Psyllid ID: psy11859
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 851 | 2.2.26 [Sep-21-2011] | |||||||
| A1ZAI5 | 625 | Putative fatty acyl-CoA r | no | N/A | 0.526 | 0.716 | 0.394 | 1e-98 | |
| Q7ZXF5 | 515 | Fatty acyl-CoA reductase | N/A | N/A | 0.529 | 0.875 | 0.347 | 2e-83 | |
| Q5ZM72 | 515 | Fatty acyl-CoA reductase | no | N/A | 0.529 | 0.875 | 0.330 | 1e-82 | |
| Q922J9 | 515 | Fatty acyl-CoA reductase | yes | N/A | 0.529 | 0.875 | 0.332 | 1e-81 | |
| Q5R834 | 515 | Fatty acyl-CoA reductase | yes | N/A | 0.529 | 0.875 | 0.334 | 1e-81 | |
| Q0P5J1 | 515 | Fatty acyl-CoA reductase | no | N/A | 0.513 | 0.848 | 0.341 | 2e-81 | |
| Q8WVX9 | 515 | Fatty acyl-CoA reductase | yes | N/A | 0.529 | 0.875 | 0.332 | 2e-81 | |
| Q960W6 | 516 | Putative fatty acyl-CoA r | no | N/A | 0.509 | 0.841 | 0.349 | 3e-81 | |
| Q7TNT2 | 515 | Fatty acyl-CoA reductase | no | N/A | 0.508 | 0.840 | 0.344 | 5e-80 | |
| Q66H50 | 515 | Fatty acyl-CoA reductase | no | N/A | 0.529 | 0.875 | 0.334 | 3e-77 |
| >sp|A1ZAI5|FACR1_DROME Putative fatty acyl-CoA reductase CG5065 OS=Drosophila melanogaster GN=CG5065 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 361 bits (927), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 187/474 (39%), Positives = 280/474 (59%), Gaps = 26/474 (5%)
Query: 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLP 271
+A++YAGRSV +TGGTGFMGKVL+EKLLRSCP+I +Y+L R KRG ARL E P
Sbjct: 119 IAQFYAGRSVFITGGTGFMGKVLVEKLLRSCPEIRNIYLLIRPKRGQEVSARLTELLNAP 178
Query: 272 VFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKE 331
+FE LR+E P +LS++ I GDI LGI + D +L VSVVF+ AA++K + +LK
Sbjct: 179 LFESLRQEKPKELSKVIPISGDITSEELGISEKDQNLLCRNVSVVFHSAATVKFDEKLKL 238
Query: 332 NVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEW 391
+V N GT+RL+++ +M L A IH STA+C+ D+ + E +Y P +P DI+ + W
Sbjct: 239 SVTINMLGTKRLVELCHRMLSLDALIHVSTAYCNCDRTDVSEVIYAPPYNPDDIISLINW 298
Query: 392 MDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGW 451
+ ++ + QLTP+++G PN+YTFTK L E ++ + LPV IVRPSIV S EP GW
Sbjct: 299 LPEDILDQLTPRLIGKRPNTYTFTKALAEHMLLKEAGNLPVAIVRPSIVTASLNEPFAGW 358
Query: 452 VDSLNGPVGVLVASGKGVVRSMI-----LNDL---------------------STETQVF 485
VD+ NGP G++ A KG+ R+M+ + D+ S ++
Sbjct: 359 VDNFNGPTGLVSALAKGMFRTMMCEKNYVADMVPVDIVINLMIAAAWRTATRKSNNLLIY 418
Query: 486 NISSNEVEAITWGEIISRGKQLIYQYPLEAGLWYPNGQIRSNRFWHYFFVIFTQILPAYL 545
N + + I W E + + ++PLE LWYP G +R NR + I LPAY+
Sbjct: 419 NCCTGQRNPIIWSEFVKHAMTSVRKHPLEGCLWYPTGDLRMNRPMNTLNCIAKHFLPAYI 478
Query: 546 VDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLLALHDNISEKDKQTFYI 605
+D + ++ +K F+V VQN+I + LEYF TR W FK+ + AL +S KD++ F
Sbjct: 479 LDGVARIMGKKPFVVNVQNKIAKAVECLEYFATRQWRFKDDNVHALLHTLSPKDREIFVF 538
Query: 606 ANIDVNIDDYLKTIILGARQYCLKEPLTTLPKARRQIKFLYVLDRIGHALILFL 659
+N D Y++ +LG R++ K+ +LP +R+++ LY L ++ + + L
Sbjct: 539 DVRHINWDKYVERYVLGFREFLFKQRPESLPASRKRMLRLYYLHQLTKLVAVLL 592
|
Catalyzes the reduction of saturated fatty acyl-CoA to fatty alcohols. Drosophila melanogaster (taxid: 7227) EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: nEC: 2 |
| >sp|Q7ZXF5|FACR1_XENLA Fatty acyl-CoA reductase 1 OS=Xenopus laevis GN=far1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 311 bits (796), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 166/478 (34%), Positives = 267/478 (55%), Gaps = 27/478 (5%)
Query: 209 MGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFS 268
M + +Y G++VL+TG TGFMGKVLLEKLLRSCP+ VY+L R K G P+ R+AE
Sbjct: 1 MLSIPEFYQGKNVLITGATGFMGKVLLEKLLRSCPNTKAVYVLVRHKAGQKPRERVAEMM 60
Query: 269 KLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAE 328
+F++LR E P ++ I ++ Q L + D L + + +VF+ AA+++
Sbjct: 61 SCKLFDKLRDEQPDCAQKVIAISSELTQPELDMSKEDQDTLIDCIDIVFHCAATVRFNES 120
Query: 329 LKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRA 388
L++ + N T++LL +A KMKKL FIH STA+ + ++K +EE +YP PV P ++ +
Sbjct: 121 LRDAMQLNVIATRQLLYLAQKMKKLEVFIHVSTAYANCNRKQIEEVVYPPPVDPKKLIES 180
Query: 389 MEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPV 448
+EWMDD + +TPK++G PN+YT+TK L E +V + +KL + IVRPSIV S++EP
Sbjct: 181 LEWMDDSLVNDITPKLIGDRPNTYTYTKALAEYVVQQEGSKLNIAIVRPSIVGASWKEPF 240
Query: 449 PGWVDSLNGPVGVLVASGKGVVRSM----------ILNDLSTETQ--------------- 483
PGW+D+ NGP G+ +A+GKG++R+M I D+ T
Sbjct: 241 PGWIDNFNGPSGLFIAAGKGILRTMRASNNAVADLIPVDVVVNTTLAAAWYSGVNRPKNM 300
Query: 484 -VFNISSNEVEAITWGEIISRGKQLIYQYPLEAGLWYPNGQIRSNRFWHYFFVIFTQILP 542
V+N ++ WGE+ + PLE PN + SN +++++ + P
Sbjct: 301 LVYNCTTGGTNPFHWGEVEYHVISTFKRNPLEQAFRRPNVNLTSNHLLYHYWIAVSHKAP 360
Query: 543 AYLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLLALHDNISEKDKQT 602
A L D + + + +++ R+ M LLEYFT+ +W + N+ L +S +DK+
Sbjct: 361 ALLYDVYLRITGRSPRMMKTITRLHRAMMLLEYFTSNSWVWNNENTNMLMSQLSPEDKKV 420
Query: 603 FYIANIDVNIDDYLKTIILGARQYCLKEPLTTLPKARRQIKFLYVLDRIGHALILFLL 660
F ++ +Y++ +G ++Y L E ++ LP AR+ + L + R G IL +L
Sbjct: 421 FNFDVRQLHWAEYMENYCMGTKKYVLNEEMSGLPAARKHLNKLRNI-RYGFNTILVVL 477
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Xenopus laevis (taxid: 8355) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q5ZM72|FACR1_CHICK Fatty acyl-CoA reductase 1 OS=Gallus gallus GN=FAR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 308 bits (788), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 158/478 (33%), Positives = 268/478 (56%), Gaps = 27/478 (5%)
Query: 209 MGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFS 268
M + +Y G++VL+TG TGFMGKVLLEKLLRSCP + VY+L R K G TP+AR+ E +
Sbjct: 1 MVSIPEYYEGKNVLLTGATGFMGKVLLEKLLRSCPKVKAVYVLVRPKAGQTPEARIEEIT 60
Query: 269 KLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAE 328
+F+RLR+E P ++ +I ++ Q L + + L E ++++F+ AA+++
Sbjct: 61 SCKLFDRLREEQPDFKEKIIVITSELTQPELDLSNPVKEKLIECINIIFHCAATVRFNET 120
Query: 329 LKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRA 388
L++ V N T++LL +A +M L F+H STA+ + ++K +EE +YP PV P +M +
Sbjct: 121 LRDAVQLNVLSTKQLLSLAQQMTNLEVFMHVSTAYAYCNRKHIEEVVYPPPVDPKKLMDS 180
Query: 389 MEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPV 448
+EWMDD + +TPK++G PN+YT+TK L E +V + +L I+RPSIV S++EP
Sbjct: 181 LEWMDDSLVNDITPKLIGDRPNTYTYTKALAEYVVQQEGARLNTAIIRPSIVGASWKEPF 240
Query: 449 PGWVDSLNGPVGVLVASGKGVVRSMILNDLST--------------------------ET 482
PGW+D+ NGP G+ +A+GKG++R+M ++ +
Sbjct: 241 PGWIDNFNGPSGLFIAAGKGILRTMRASNGAVADLVPVDVVVNMTLAAAWYSGVNRPRNI 300
Query: 483 QVFNISSNEVEAITWGEIISRGKQLIYQYPLEAGLWYPNGQIRSNRFWHYFFVIFTQILP 542
V+N ++ W E+ + PLE PN + SN +++++ + P
Sbjct: 301 MVYNCTTGGTNPFHWSEVEYHVISTFKRNPLEQAFRRPNVNLTSNHLLYHYWIAVSHKAP 360
Query: 543 AYLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLLALHDNISEKDKQT 602
A+L D + + + +++ R+ M LEYFT+ +W + + + L + +S +DK+T
Sbjct: 361 AFLYDIYLRITGRSPRMMKTITRLHKAMVFLEYFTSNSWIWNTENMTMLMNQLSPEDKKT 420
Query: 603 FYIANIDVNIDDYLKTIILGARQYCLKEPLTTLPKARRQIKFLYVLDRIGHALILFLL 660
F ++ +Y++ +G ++Y L E ++ LP AR+ + L + R G IL +L
Sbjct: 421 FNFDVRQLHWAEYMENYCMGTKKYVLNEEMSGLPAARKHLNKLRNI-RYGFNTILVIL 477
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Gallus gallus (taxid: 9031) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q922J9|FACR1_MOUSE Fatty acyl-CoA reductase 1 OS=Mus musculus GN=Far1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 305 bits (781), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 159/478 (33%), Positives = 267/478 (55%), Gaps = 27/478 (5%)
Query: 209 MGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFS 268
M + +Y G+++L+TG TGF+GKVLLEKLLRSCP + VY+L R K G TP+ R+ E
Sbjct: 1 MVSIPEYYEGKNILLTGATGFLGKVLLEKLLRSCPRVNSVYVLVRQKAGQTPQERVEEIL 60
Query: 269 KLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAE 328
+F+RLR E P ++ I ++ Q L + + D ++ + +V+F+ AA+++
Sbjct: 61 SSKLFDRLRDENPDFREKIIAINSELTQPKLALSEEDKEIIIDSTNVIFHCAATVRFNEN 120
Query: 329 LKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRA 388
L++ V N T++L+ +A +MK L F+H STA+ + ++K ++E +YP PV P ++ +
Sbjct: 121 LRDAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDS 180
Query: 389 MEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPV 448
+EWMDD + +TPK++G PN+Y +TK L E +V + KL V IVRPSIV S++EP
Sbjct: 181 LEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEPF 240
Query: 449 PGWVDSLNGPVGVLVASGKGVVRSM-----ILNDL---------------------STET 482
PGW+D+ NGP G+ +A+GKG++R+M L DL
Sbjct: 241 PGWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVNRPRNI 300
Query: 483 QVFNISSNEVEAITWGEIISRGKQLIYQYPLEAGLWYPNGQIRSNRFWHYFFVIFTQILP 542
V+N ++ WGE+ + PLE PN + SN +++++ + P
Sbjct: 301 MVYNCTTGSTNPFHWGEVEYHVISTFKRNPLEQAFRRPNVNLTSNHLLYHYWIAVSHKAP 360
Query: 543 AYLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLLALHDNISEKDKQT 602
A+L D + + + +++ R+ M LEYFT+ +W + + L + ++ +DK+T
Sbjct: 361 AFLYDIYLRMTGRSPRMMKTITRLHKAMVFLEYFTSNSWVWNTDNVNMLMNQLNPEDKKT 420
Query: 603 FYIANIDVNIDDYLKTIILGARQYCLKEPLTTLPKARRQIKFLYVLDRIGHALILFLL 660
F I ++ +Y++ +G ++Y L E ++ LP AR+ + L + R G IL +L
Sbjct: 421 FNIDVRQLHWAEYIENYCMGTKKYVLNEEMSGLPAARKHLNKLRNI-RYGFNTILVIL 477
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q5R834|FACR1_PONAB Fatty acyl-CoA reductase 1 OS=Pongo abelii GN=FAR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 305 bits (780), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 160/478 (33%), Positives = 267/478 (55%), Gaps = 27/478 (5%)
Query: 209 MGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFS 268
M + +Y G++VL+TG TGF+GKVLLEKLLRSCP + VY+L R K G TP+ R+ E
Sbjct: 1 MVSIPEYYEGKNVLLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEVL 60
Query: 269 KLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAE 328
+F+RLR E P ++ I ++ Q L + + D ++ E +++F+ AA+++
Sbjct: 61 SGKLFDRLRDENPDFREKIIAINSELTQPKLALSEEDKEVIIESTNIIFHCAATVRFNEN 120
Query: 329 LKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRA 388
L++ V N T++L+ +A +MK L F+H STA+ + ++K ++E +YP PV P ++ +
Sbjct: 121 LRDAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDS 180
Query: 389 MEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPV 448
+EWMDD + +TPK++G PN+Y +TK L E +V + KL V IVRPSIV S++EP
Sbjct: 181 LEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEPF 240
Query: 449 PGWVDSLNGPVGVLVASGKGVVRSM-----ILNDL---------------------STET 482
PGW+D+ NGP G+ +A+GKG++R++ L DL
Sbjct: 241 PGWIDNFNGPSGLFIAAGKGILRTIRASNNALADLVPVDVVVNMSLAAAWYSGVNRPRNI 300
Query: 483 QVFNISSNEVEAITWGEIISRGKQLIYQYPLEAGLWYPNGQIRSNRFWHYFFVIFTQILP 542
V+N ++ WGE+ + PLE PN + SN +++++ + P
Sbjct: 301 MVYNCTTGSTNPFHWGEVEYHVISTFKRNPLEQAFRRPNVNLTSNHLLYHYWIAVSHKAP 360
Query: 543 AYLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLLALHDNISEKDKQT 602
A+L D + + + +++ R+ M LEYFT+ +W + + L + ++ +DK+T
Sbjct: 361 AFLYDIYLRMTGRSPRMMKTITRLHKAMVFLEYFTSNSWVWNTDNVNMLMNQLNPEDKKT 420
Query: 603 FYIANIDVNIDDYLKTIILGARQYCLKEPLTTLPKARRQIKFLYVLDRIGHALILFLL 660
F I ++ +Y++ LG ++Y L E ++ LP AR+ + L + R G IL +L
Sbjct: 421 FNIDVRQLHWAEYIENYCLGTKKYVLNEEMSGLPAARKHLNKLRNI-RYGFNTILVIL 477
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q0P5J1|FACR2_BOVIN Fatty acyl-CoA reductase 2 OS=Bos taurus GN=FAR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 304 bits (778), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 158/463 (34%), Positives = 262/463 (56%), Gaps = 26/463 (5%)
Query: 209 MGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFS 268
M +A +Y G+S+L+TG TGFMGKVL+EKL R+ PD+ VYIL R K+G T + R+ +
Sbjct: 1 MSMIAAFYGGKSILITGATGFMGKVLMEKLFRTSPDLKVVYILVRPKQGQTLQQRVFQIL 60
Query: 269 KLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAE 328
+FE++++ CP ++ I D+ Q + I D+ L +++F+ AA+++ +
Sbjct: 61 DSKLFEKVKEVCPNVHEKIRAISADLNQNDFAISKEDMKELLSHTNIIFHCAATVRFDDH 120
Query: 329 LKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRA 388
L+ V N TQ+LL +A +M KL AFIH STAF + + K ++E +YP PV P I+ +
Sbjct: 121 LRHAVQLNVTATQQLLLMASQMPKLEAFIHISTAFSNCNLKHIDEVVYPCPVEPKKIIDS 180
Query: 389 MEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPV 448
MEW+DD I ++TPK++G PN+YT+TK L E +V + L + I+RPSI+ ++QEP
Sbjct: 181 MEWLDDAIIDEITPKLIGDWPNTYTYTKALGEVVVQQEGGNLNIAIIRPSIMGATWQEPF 240
Query: 449 PGWVDSLNGPVGVLVASGKGVVRS-----MILNDL---------------------STET 482
PGWVD+LNGP G+++A+GKG +RS M + DL T
Sbjct: 241 PGWVDNLNGPSGLIIAAGKGFLRSIRATPMAVADLIPADTVVNLTLAVGWYTAVHRPKST 300
Query: 483 QVFNISSNEVEAITWGEIISRGKQLIYQYPLEAGLWYPNGQIRSNRFWHYFFVIFTQILP 542
V++ +S + WG++ + + P E PN +N +++ + P
Sbjct: 301 LVYHCTSGNLNPCNWGKMGLQVLATFEKIPFERAFRRPNADFTTNNITTHYWNAVSHRAP 360
Query: 543 AYLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLLALHDNISEKDKQT 602
A + DF + L +K + ++ NR+ + +LEYF R+W++ L +S +D++
Sbjct: 361 AIIYDFYLRLTGRKPRMTKLMNRLLRTLSMLEYFVNRSWEWSTYNTEMLMSELSPEDQRV 420
Query: 603 FYIANIDVNIDDYLKTIILGARQYCLKEPLTTLPKARRQIKFL 645
F +N +Y++ +LG ++Y LKE + +P+A++ +K L
Sbjct: 421 FNFDVRQLNWLEYIENYVLGVKKYLLKEDMAGIPEAKQHLKRL 463
|
Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. The preferred substrates are C16, C18, C18:1 and C18:2 but low activity can be observed with C10-C14 substrates. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q8WVX9|FACR1_HUMAN Fatty acyl-CoA reductase 1 OS=Homo sapiens GN=FAR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 304 bits (778), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 159/478 (33%), Positives = 268/478 (56%), Gaps = 27/478 (5%)
Query: 209 MGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFS 268
M + +Y G++VL+TG TGF+GKVLLEKLLRSCP + VY+L R K G TP+ R+ E
Sbjct: 1 MVSIPEYYEGKNVLLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEVL 60
Query: 269 KLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAE 328
+F+RLR E P ++ I ++ Q L + + D ++ + +++F+ AA+++
Sbjct: 61 SGKLFDRLRDENPDFREKIIAINSELTQPKLALSEEDKEVIIDSTNIIFHCAATVRFNEN 120
Query: 329 LKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRA 388
L++ V N T++L+ +A +MK L F+H STA+ + ++K ++E +YP PV P ++ +
Sbjct: 121 LRDAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDS 180
Query: 389 MEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPV 448
+EWMDD + +TPK++G PN+Y +TK L E +V + KL V IVRPSIV S++EP
Sbjct: 181 LEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEPF 240
Query: 449 PGWVDSLNGPVGVLVASGKGVVRSM-----ILNDL---------------------STET 482
PGW+D+ NGP G+ +A+GKG++R++ L DL
Sbjct: 241 PGWIDNFNGPSGLFIAAGKGILRTIRASNNALADLVPVDVVVNMSLAAAWYSGVNRPRNI 300
Query: 483 QVFNISSNEVEAITWGEIISRGKQLIYQYPLEAGLWYPNGQIRSNRFWHYFFVIFTQILP 542
V+N ++ WGE+ + PLE PN + SN +++++ + P
Sbjct: 301 MVYNCTTGSTNPFHWGEVEYHVISTFKRNPLEQAFRRPNVNLTSNHLLYHYWIAVSHKAP 360
Query: 543 AYLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLLALHDNISEKDKQT 602
A+L D + + + +++ R+ M LEYFT+ +W + + + L + ++ +DK+T
Sbjct: 361 AFLYDIYLRMTGRSPRMMKTITRLHKAMVFLEYFTSNSWVWNTENVNMLMNQLNPEDKKT 420
Query: 603 FYIANIDVNIDDYLKTIILGARQYCLKEPLTTLPKARRQIKFLYVLDRIGHALILFLL 660
F I ++ +Y++ LG ++Y L E ++ LP AR+ + L + R G IL +L
Sbjct: 421 FNIDVRQLHWAEYIENYCLGTKKYVLNEEMSGLPAARKHLNKLRNI-RYGFNTILVIL 477
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q960W6|FACR3_DROME Putative fatty acyl-CoA reductase CG8306 OS=Drosophila melanogaster GN=CG8306 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 303 bits (777), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 163/467 (34%), Positives = 266/467 (56%), Gaps = 33/467 (7%)
Query: 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLP 271
+ +YAGR+V +TG TGF+G ++EKLLR P++G +Y+L RAK+G + + RL E K
Sbjct: 6 ITDFYAGRNVFITGATGFVGVTIVEKLLRDVPNVGTLYLLMRAKKGKSVQERLEELKKNS 65
Query: 272 VFERLRK-ECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELK 330
VF++ ++ + ++LS++ IEGD+ +LGI D L + V+VVF+ AA+L LK
Sbjct: 66 VFDKFKELQLQSRLSKIVPIEGDVGLEHLGISPKDRQTLIDNVNVVFHSAATLDFFQSLK 125
Query: 331 ENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAME 390
E N RGT+R++++ ++K L A +H S+A+ + +EEKLYP+P P I++ E
Sbjct: 126 ETTNINLRGTRRVVELCQQIKNLDALVHVSSAYVNAYLTKVEEKLYPAPEDPEKIIQLSE 185
Query: 391 WMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPG 450
++D+ +K+L PK+L HPN+YTFTK L E V +K P IVRPS++ +++EP+PG
Sbjct: 186 TLNDDALKELEPKLLKDHPNTYTFTKHLAEHEVANVASKFPCGIVRPSMITAAWKEPIPG 245
Query: 451 WVDSLNGPVGVLVASGKGVVRSM---------------ILNDLST--------------- 480
W S NGP G + + KGV+R + ++N + T
Sbjct: 246 WTISKNGPQGFFMGASKGVLRRLPLDPSIIMDYIPIDVVVNGIITTGYYVNSLQAKNGGR 305
Query: 481 --ETQVFNISSNEVEAITWGEIISRGKQLIYQYPLEAGLWYPNGQIRSNRFWHYFFVIFT 538
+ Q+F+++S+ + + + + ++ YPL + +WYPN ++ + + I
Sbjct: 306 PADLQIFHLTSSTYKPFRFELMTDKINSYLHDYPLNSAVWYPNLRLVKSLWVFRLSAILF 365
Query: 539 QILPAYLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLLALHDNISEK 598
+PA ++D + + + LVR+ +W ++ LE F W F +KRLLAL ++
Sbjct: 366 HFIPAIILDLVTKIGGGRPILVRLHKNVWNSLNTLEKFIFTEWHFDSKRLLALSKTLNIV 425
Query: 599 DKQTFYIANIDVNIDDYLKTIILGARQYCLKEPLTTLPKARRQIKFL 645
DK+ F+I ++ D+Y ILG RQY KEP+ L KARR+ K L
Sbjct: 426 DKKKFFIDIGELAWDEYFSNTILGVRQYLSKEPIKNLEKARRKDKIL 472
|
Catalyzes the reduction of saturated fatty acyl-CoA to fatty alcohols. Drosophila melanogaster (taxid: 7227) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q7TNT2|FACR2_MOUSE Fatty acyl-CoA reductase 2 OS=Mus musculus GN=Far2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 299 bits (766), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 161/467 (34%), Positives = 266/467 (56%), Gaps = 34/467 (7%)
Query: 209 MGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFS 268
M +A +Y+ +S+L+TG TGF+GKVL+EKL R+ P + +YIL R K G T + R+ +
Sbjct: 1 MSMIAAFYSNKSILITGATGFLGKVLMEKLFRTSPHLKVIYILVRPKSGQTLQERVFQIL 60
Query: 269 KLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAE 328
+FE++++ CP ++ I D+ Q + I D+ L +++F+ AA+++ +A
Sbjct: 61 NSKLFEKVKEVCPNVHEKIRPISADLNQRDFAISKEDVQELLSCTNIIFHCAATVRFDAH 120
Query: 329 LKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRA 388
L+E V N TQ+LL +A +M KL AFIH STAF + + ++E +YP PV P I+ +
Sbjct: 121 LREAVQLNVTATQQLLLMASQMPKLEAFIHISTAFSNCNLSHIDEVIYPCPVEPRKIIDS 180
Query: 389 MEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPV 448
MEW+DD I+++TPK++G PN+YT+TK L E +V + L V IVRPSIV ++QEP
Sbjct: 181 MEWLDDSIIEEITPKLIGDRPNTYTYTKALGEIVVQQESGNLNVAIVRPSIVGATWQEPF 240
Query: 449 PGWVDSLNGPVGVLVASGKGVVRS-----MILNDLSTETQVFNISSNEVEAITWGEIISR 503
PGWVD+LNGP G+++A+GKG +RS M + D+ V N++ A+ W + R
Sbjct: 241 PGWVDNLNGPSGLIIATGKGFLRSIKATPMAVADVIPVDTVVNLTI----AVGWYTAVHR 296
Query: 504 GKQ-LIY------------------------QYPLEAGLWYPNGQIRSNRFWHYFFVIFT 538
K LIY + P E+ PN ++ F +++ +
Sbjct: 297 PKSTLIYHSTSGNLNPCNWYKMGLQVLATIEKIPFESAFRRPNADFTTSNFTTHYWNTVS 356
Query: 539 QILPAYLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLLALHDNISEK 598
+PA + DF + L +K ++++ NR+ + +LEYF +W++ L +S +
Sbjct: 357 HRVPAIIYDFYLRLTGRKPRMLKLMNRLLKTISMLEYFINHSWEWSTNNTEMLLSELSPE 416
Query: 599 DKQTFYIANIDVNIDDYLKTIILGARQYCLKEPLTTLPKARRQIKFL 645
D++ F +N +Y++ +LG ++Y LKE L +PKA++ ++ L
Sbjct: 417 DQRVFNFDVRQLNWLEYIENYVLGVKKYLLKEDLAGIPKAKQHLRRL 463
|
Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. The preferred substrates are C16, C18, C18:1 and C18:2 but low activity can be observed with C10-C14 substrates. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q66H50|FACR1_RAT Fatty acyl-CoA reductase 1 OS=Rattus norvegicus GN=Far1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (742), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 160/478 (33%), Positives = 265/478 (55%), Gaps = 27/478 (5%)
Query: 209 MGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFS 268
M + +Y G+++L+TG TGF+GKVLLEKLLRSCP + VY+L R K G TP+ R+ E
Sbjct: 1 MVSIPEYYEGKNILLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEIL 60
Query: 269 KLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAE 328
+F+RLR E P ++ I ++ Q L + + D ++ + +V+F+ AA+++
Sbjct: 61 SGKLFDRLRDENPDFRQKIIAINSELTQPKLALSEEDKEIIIDSTNVIFHCAATVRFNEN 120
Query: 329 LKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRA 388
L++ V N T++L+ +A +MK L F+H STA+ + ++K ++E +YP PV P ++ +
Sbjct: 121 LRDAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDS 180
Query: 389 MEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPV 448
+EWMDD + +TPK++G PN+Y +TK L E +V + KL V IVRPSIV S++EP
Sbjct: 181 LEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEPF 240
Query: 449 PGWVDSLNGPVGVLVASGKGVVRSM-----ILNDL---------------------STET 482
PGW+D+ NGP G+ +A+GKG++R+M L DL
Sbjct: 241 PGWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVNRPRNI 300
Query: 483 QVFNISSNEVEAITWGEIISRGKQLIYQYPLEAGLWYPNGQIRSNRFWHYFFVIFTQILP 542
V+N ++ WGE+ PL +P + SN +++ +P
Sbjct: 301 MVYNCTTGSTNPFHWGEVGDYLNHSFKTNPLNQVFRHPYVKFYSNNLMLHYWKGVKHTVP 360
Query: 543 AYLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLLALHDNISEKDKQT 602
A L+D + L QK ++++ R+ M LEYFT+ +W + + L + ++ +DK+T
Sbjct: 361 ALLLDLALRLTGQKPWMMKTITRLHKAMVFLEYFTSNSWVWNTDNVNMLMNQLNPEDKKT 420
Query: 603 FYIANIDVNIDDYLKTIILGARQYCLKEPLTTLPKARRQIKFLYVLDRIGHALILFLL 660
F I ++ +Y++ +G ++Y L E ++ LP AR+ + L + R G IL +L
Sbjct: 421 FNIDVRQLHWAEYIENYCMGTKKYVLNEEMSGLPAARKHLNKLRNI-RYGFNTILVIL 477
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 851 | ||||||
| 193636566 | 517 | PREDICTED: putative fatty acyl-CoA reduc | 0.527 | 0.868 | 0.5 | 1e-143 | |
| 157104440 | 502 | hypothetical protein AaeL_AAEL014302 [Ae | 0.551 | 0.934 | 0.476 | 1e-132 | |
| 332021395 | 522 | Putative fatty acyl-CoA reductase [Acrom | 0.541 | 0.883 | 0.469 | 1e-132 | |
| 383855698 | 519 | PREDICTED: putative fatty acyl-CoA reduc | 0.531 | 0.870 | 0.463 | 1e-132 | |
| 322800414 | 523 | hypothetical protein SINV_08200 [Solenop | 0.518 | 0.843 | 0.475 | 1e-131 | |
| 300116407 | 466 | uncharacterized protein LOC412986 [Apis | 0.511 | 0.933 | 0.474 | 1e-131 | |
| 340729197 | 519 | PREDICTED: putative fatty acyl-CoA reduc | 0.532 | 0.872 | 0.464 | 1e-130 | |
| 380017038 | 519 | PREDICTED: putative fatty acyl-CoA reduc | 0.532 | 0.872 | 0.468 | 1e-129 | |
| 307168071 | 522 | Fatty acyl-CoA reductase 1 [Camponotus f | 0.513 | 0.837 | 0.510 | 1e-128 | |
| 350416860 | 519 | PREDICTED: putative fatty acyl-CoA reduc | 0.532 | 0.872 | 0.458 | 1e-127 |
| >gi|193636566|ref|XP_001948821.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like isoform 1 [Acyrthosiphon pisum] gi|328724644|ref|XP_003248209.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 239/478 (50%), Positives = 336/478 (70%), Gaps = 29/478 (6%)
Query: 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLP 271
V WY GRSV +TGGTG+MGKVL+EKLLR C I +Y+LCR K+G +P AR+ + KL
Sbjct: 6 VCEWYTGRSVFITGGTGYMGKVLIEKLLRDCGGIKTIYVLCRPKKGFSPTARIEQIRKLA 65
Query: 272 VFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKE 331
VFER+R E P +L ++ +EGD+ LG+ + +L +EVS+VFNGAASL+LE+ LK+
Sbjct: 66 VFERVRTEFPDRLKKIKAMEGDLGLPGLGLSSENKSILVDEVSIVFNGAASLRLESGLKD 125
Query: 332 NVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEW 391
+ NT GT+ +LD+A++MK L +F+H STAFCH + LEE +YPSP +P D+MRA+EW
Sbjct: 126 AIRQNTTGTKHVLDLAVEMKNLASFVHLSTAFCHCEYDTLEETIYPSPANPEDVMRAVEW 185
Query: 392 MDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGW 451
MDD T++ +TP++LGPHPN YT++KRL E+LV EY ++P+ + RPSIV PSF++PVPGW
Sbjct: 186 MDDHTLETITPRLLGPHPNCYTYSKRLAESLVSEYANRIPISVARPSIVTPSFKDPVPGW 245
Query: 452 VDSLNGPVGVLVASGKGVVRSM-----------------------------ILNDLSTET 482
VDSLNGPVGV+VA GKGV+RSM I N +
Sbjct: 246 VDSLNGPVGVIVAGGKGVIRSMLCSPDFEAEVVPVDIAINALVLIAWKRTTIDNTIDDMV 305
Query: 483 QVFNISSNEVEAITWGEIISRGKQLIYQYPLEAGLWYPNGQIRSNRFWHYFFVIFTQILP 542
+NIS ++ +TWGE++++GK+ Y+YP +AGLWYPNG IR+N+F HYF V Q++P
Sbjct: 306 PCYNISKGDIVRLTWGEVLAKGKRYAYEYPFDAGLWYPNGSIRTNKFVHYFIVFMLQVIP 365
Query: 543 AYLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLLALHDNISEKDKQT 602
AYL+D IM+L RQKTF+VRVQ RI +GM +L+YFT R W+FK + AL +N++E+D++
Sbjct: 366 AYLIDGIMILARQKTFMVRVQKRIAVGMDVLQYFTMRGWNFKIENTKALINNLNEEDRKK 425
Query: 603 FYIANIDVNIDDYLKTIILGARQYCLKEPLTTLPKARRQIKFLYVLDRIGHALILFLL 660
F+I N +++++ Y+ ++LGARQYC+KEPL L +AR +K Y L+ + + LL
Sbjct: 426 FFIQNTEIDVEKYMIQVLLGARQYCMKEPLANLDRARFHLKLQYWLNLVTQLVFGVLL 483
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157104440|ref|XP_001648409.1| hypothetical protein AaeL_AAEL014302 [Aedes aegypti] gi|108869199|gb|EAT33424.1| AAEL014302-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 238/499 (47%), Positives = 334/499 (66%), Gaps = 30/499 (6%)
Query: 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLP 271
V +WYAG+++ VTGG+GFMGKVLLEKLL +C +I +Y+L R KRG P+ARL E+ KLP
Sbjct: 6 VQKWYAGKTIFVTGGSGFMGKVLLEKLLYACSEIRTIYVLIRPKRGKVPQARLDEWFKLP 65
Query: 272 VFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKE 331
+F+R++ + P +L I+GDI LGI D+ L E +VF+ AA+LKLEA LK+
Sbjct: 66 LFQRIKNQKPEVFKKLVPIQGDITFDGLGISKDDVDRLANEAEIVFHCAATLKLEANLKD 125
Query: 332 NVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEW 391
+ NT GT+R+LD+ +MKKL +H STAFC+ D++VL E++Y SP+D+MRA+EW
Sbjct: 126 AIEMNTVGTKRVLDLCKQMKKLQVLLHLSTAFCYCDKEVLNERVYDFHHSPYDLMRAIEW 185
Query: 392 MDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGW 451
MD++T+ +TP +L PHPN+YT++KRLTE LV + +LPV IVRPSIV P+ +EPV GW
Sbjct: 186 MDEKTLDLITPNLLKPHPNTYTYSKRLTECLVRDNYPQLPVCIVRPSIVCPADKEPVEGW 245
Query: 452 VDSLNGPVGVLVASGKGVVRSMILN----------------------------DLSTETQ 483
VD+LNGPVG++VA GKGV+RSM+ N ++ E
Sbjct: 246 VDNLNGPVGIMVAGGKGVMRSMLCNGEYNAEVIPVDLAINGLITIAFTIGQMKEMPPEIP 305
Query: 484 VFNISSNEVEAITWGEIISRGKQLIYQYPLEAGLWYPNGQIRSNRFWHYFFVIFTQILPA 543
V+N++ E + TW E++ GK Y+YP EAG+WYP+G I +N+F+H F VIF LPA
Sbjct: 306 VYNVTCRETKRTTWKEVLEMGKATAYEYPFEAGVWYPDGGITTNKFYHTFCVIFFHWLPA 365
Query: 544 YLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLLALHDNISEKDKQTF 603
Y +DF+M+ QK F+ R Q I G+ LL++FTTR WDFK+ + ++ N++ +D F
Sbjct: 366 YFIDFLMLCFGQKRFMCRFQTMISQGLELLQFFTTRQWDFKSHQYQSIAKNLTPEDFALF 425
Query: 604 YIANIDVNIDDYLKTIILGARQYCLKEPLTTLPKARRQIKFLYVLDRIGHALILFLLGSV 663
+ ++ +YLK IILG RQYCLKEPL+TLPKAR Q+K L+VLD++ AL+L+LL V
Sbjct: 426 DMDIDKIDTKEYLKRIILGGRQYCLKEPLSTLPKARMQLKALWVLDKVAKALMLWLL--V 483
Query: 664 PKLISTTGLWYPNGQIRSN 682
L+ TG G + +N
Sbjct: 484 WGLVKITGFSEIFGTVDAN 502
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332021395|gb|EGI61763.1| Putative fatty acyl-CoA reductase [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 230/490 (46%), Positives = 330/490 (67%), Gaps = 29/490 (5%)
Query: 210 GDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSK 269
+V+ +Y +++ +TG +GFMGKVLLEKLL SC ++ K+YIL R+K+G + +ARL E K
Sbjct: 8 SEVSSFYIDKTIFITGASGFMGKVLLEKLLFSCSNLNKIYILIRSKKGRSIEARLDEMFK 67
Query: 270 LPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAEL 329
+PVF+R+R E P ++ + GD+ NLG+ D +L EV +VF+ AA+L+LEA+L
Sbjct: 68 MPVFQRIRNEKPYLFKKVIPMCGDVCLPNLGLTDQQRELLINEVHIVFHFAATLRLEAKL 127
Query: 330 KENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAM 389
K+ + NT GT++LLD+A +MK LV+F+H STAFCH DQ+ L E+ Y SP P DIMR +
Sbjct: 128 KDAIEMNTTGTKKLLDLAKEMKHLVSFVHLSTAFCHVDQEELGERCYDSPDDPQDIMRLV 187
Query: 390 EWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVP 449
+W+DDE I +TPK+L PHPN+YT++KRL ETLV LP I RPSIV PS+ EP+P
Sbjct: 188 QWLDDEGINLITPKLLHPHPNTYTYSKRLAETLVSNEYPNLPCCIARPSIVTPSYLEPMP 247
Query: 450 GWVDSLNGPVGVLVASGKGVVRSM---------------------------ILNDLSTET 482
GWVD+LNGP G+LV +GKGV+RSM +N S
Sbjct: 248 GWVDNLNGPTGLLVGAGKGVIRSMHCNGDYHAEVIPVDLAINAIITIARKIAINQKSKTI 307
Query: 483 QVFNISSNEVEAITWGEIISRGKQLIYQYPLEAGLWYPNGQIRSNRFWHYFFVIFTQILP 542
V NI+ N V ITW E+I +G++ +++YP + +W+P+G IR+++F H FV F ++P
Sbjct: 308 PVINITQNNVRPITWAEVIEKGRKRLHEYPFDGQVWFPDGDIRNSKFVHNLFVFFFHMIP 367
Query: 543 AYLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLLALHDNISEKDKQT 602
AYL+DF+M++ RQK F++R+Q RI G+ +L+YFTTR W F N L+ L + +S +D+
Sbjct: 368 AYLIDFLMLIFRQKRFMIRIQKRISDGLDVLQYFTTREWVFYNDGLINLFEELSTEDQNL 427
Query: 603 FYIANIDVNIDDYLKTIILGARQYCLKEPLTTLPKARRQIKFLYVLDRIGHALILFLLGS 662
F I D++ID+YLKT+ILGARQYC+KE L+TLPKARR K +Y++ I A+ LF G
Sbjct: 428 FKIIVYDIDIDEYLKTVILGARQYCMKEDLSTLPKARRHQKIMYIVHNI--AVYLFYFGM 485
Query: 663 VPKLISTTGL 672
+ + + G+
Sbjct: 486 LYFIYNNIGI 495
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383855698|ref|XP_003703347.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 223/481 (46%), Positives = 325/481 (67%), Gaps = 29/481 (6%)
Query: 208 DMGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEF 267
++ ++ +Y G+++ +TGGTG MGKVL+EKLL SC ++ K+YIL RAKRG +P+AR+ E
Sbjct: 3 ELSEIQSFYVGKTIFITGGTGLMGKVLIEKLLYSCSNLKKIYILARAKRGRSPEARVNEM 62
Query: 268 SKLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEA 327
KLP+F+R++K+ P L ++ + GD+ NLG+ D L ML E +VF+ AA+L+LE+
Sbjct: 63 FKLPLFQRIQKQKPEMLKKVIALNGDVTSDNLGLNDEQLEMLINETDIVFHCAATLRLES 122
Query: 328 ELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMR 387
LK+ + NT GT+R+L++ KMK L AF+H STAFC+PD++ L+E++Y PHD+M+
Sbjct: 123 NLKDAIEMNTVGTKRMLELGKKMKNLTAFVHLSTAFCYPDKEELDEQIYDPSDDPHDVMK 182
Query: 388 AMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEP 447
++W+D+ I Q+TPK+L HPN+YT++KRL E LV LP I RPSIV P++ EP
Sbjct: 183 MVQWLDESAIDQITPKVLNLHPNTYTYSKRLAEKLVANEFPNLPCCIARPSIVTPAWAEP 242
Query: 448 VPGWVDSLNGPVGVLVASGKGVVRSM---------------ILNDL------------ST 480
+PGWVD+LNGPVG+LV +GKGV+RSM +N L S
Sbjct: 243 LPGWVDNLNGPVGLLVGAGKGVIRSMHCIGSYHAEVIPVDVAINSLITIAQKVANTEKSR 302
Query: 481 ETQVFNISSNEVEAITWGEIISRGKQLIYQYPLEAGLWYPNGQIRSNRFWHYFFVIFTQI 540
Q++NI+ N + ITWGEI+ +GK++ YQYP E +WYP G I SN+F H V F I
Sbjct: 303 GIQIYNITQNRIMPITWGEILEKGKKIAYQYPFEGQVWYPAGDIHSNKFVHDLIVFFFHI 362
Query: 541 LPAYLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLLALHDNISEKDK 600
+PAYL+DF+M++ RQ+ F+VR+QNRI G+ +L+YFTTR W F N L + + +S KD+
Sbjct: 363 IPAYLIDFLMLIFRQRRFMVRLQNRISTGLEVLQYFTTREWIFHNTNFLMMKEEMSSKDQ 422
Query: 601 QTFYIANIDVNIDDYLKTIILGARQYCLKEPLTTLPKARRQIKFLYVLDRIGHALILFLL 660
Q F + + ++ +Y+K ILGARQYC+KE L++LP+ARR +YV+ + A+ LF
Sbjct: 423 QIFPLNLLSIDQTEYIKHCILGARQYCMKEDLSSLPRARRYQAVMYVIHLL--AVYLFYF 480
Query: 661 G 661
G
Sbjct: 481 G 481
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322800414|gb|EFZ21418.1| hypothetical protein SINV_08200 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 477 bits (1227), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/469 (47%), Positives = 318/469 (67%), Gaps = 28/469 (5%)
Query: 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLP 271
+ +Y G+++ VTGGTGFMGKVLL+KLL SC D+ K+Y+L R K+G + + RL + KLP
Sbjct: 10 IQSFYVGKTIFVTGGTGFMGKVLLQKLLYSCSDLNKIYVLMRPKKGRSIENRLDDMFKLP 69
Query: 272 VFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKE 331
+F+ LR E P +L + GD+ NLGI +L EV ++F+ AA+L+LEA+LK+
Sbjct: 70 LFQSLRNEKPQVFKKLIPVHGDVCSPNLGISAEKYELLLNEVQILFHFAATLRLEAKLKD 129
Query: 332 NVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEW 391
+ NT GT+R+L++A +MK+L AF+H STAFCH DQ+ L E++Y + PHD+MR ++W
Sbjct: 130 AIEMNTTGTKRVLELAKEMKQLQAFVHLSTAFCHVDQEELGERIYDATDDPHDVMRLVQW 189
Query: 392 MDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGW 451
+DDE I +TPK+L PHPN+YT++KRL ETLV LP I RPSIV PS+ +P+PGW
Sbjct: 190 LDDEAIDLITPKLLHPHPNTYTYSKRLAETLVANEYPNLPCCIARPSIVTPSYSDPIPGW 249
Query: 452 VDSLNGPVGVLVASGKGVVRSMILN----------DLSTET------------------Q 483
VD+LNGP G+LV +GKGV+RSM N DL+ +
Sbjct: 250 VDNLNGPTGLLVGAGKGVIRSMHCNGDYHAEVMPVDLAINSVITVAYRIANKLEELKSIP 309
Query: 484 VFNISSNEVEAITWGEIISRGKQLIYQYPLEAGLWYPNGQIRSNRFWHYFFVIFTQILPA 543
V NI+ + V ITW E++ RGK +I+ YP E +WYP+G +RS++FWH V F I+PA
Sbjct: 310 VINITQSNVRPITWKEVLMRGKHIIHDYPFEGLIWYPDGDMRSSKFWHSLIVFFFHIIPA 369
Query: 544 YLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLLALHDNISEKDKQTF 603
YL+DF+M++ RQK F+VR+Q RI G+ +L+YFTTR W F N R+L +H+ ++ ++K+ F
Sbjct: 370 YLIDFLMLIFRQKRFMVRIQRRISDGLQVLQYFTTREWKFHNTRMLRMHEELTPEEKRIF 429
Query: 604 YIANIDVNIDDYLKTIILGARQYCLKEPLTTLPKARRQIKFLYVLDRIG 652
+++ID+Y K IILG+RQYC+KE L+TLPKARR K +Y++ I
Sbjct: 430 RCIVYNIDIDEYFKNIILGSRQYCMKEDLSTLPKARRHQKIMYIVHIIA 478
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|300116407|ref|NP_001177850.1| uncharacterized protein LOC412986 [Apis mellifera] gi|298569763|gb|ADI87410.1| putative fatty acyl-CoA reductase [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 219/462 (47%), Positives = 318/462 (68%), Gaps = 27/462 (5%)
Query: 207 ADMGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAE 266
+++ ++ +Y G+++ VTGGTG MGKVL+EKLL SC DI K+Y+L R KRG TP+ R+ E
Sbjct: 2 SELTEIQSFYKGKNIFVTGGTGLMGKVLIEKLLYSCTDINKIYVLIRPKRGRTPETRMDE 61
Query: 267 FSKLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLE 326
KLP+F+R+RK+ P + ++ + GD+ NLG+ ML +E+ +VF+ AA+LKLE
Sbjct: 62 MLKLPMFQRIRKQKPQMMKKIVTLNGDVSGENLGLTKEQSEMLMDEIDIVFHFAATLKLE 121
Query: 327 AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIM 386
A+LK+ + NT GT+R+L++A KMKKL F+H STAFC+ D++ L+EK+Y PHD+M
Sbjct: 122 AKLKDAIEMNTVGTKRVLELAKKMKKLKTFVHLSTAFCYADKEELDEKVYDPSTDPHDVM 181
Query: 387 RAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQE 446
+ +EW+D+ I +TPK+L HPN+YT++KRL E LV + LP I RPSIV P+ E
Sbjct: 182 KMVEWLDESAIDLITPKLLNLHPNTYTYSKRLAEKLVADEYPNLPCSIARPSIVTPALTE 241
Query: 447 PVPGWVDSLNGPVGVLVASGKGVVRSMI---------------------------LNDLS 479
P+PGWVD+LNGPVG++V +GKGV+RSM+ N+ +
Sbjct: 242 PLPGWVDNLNGPVGIMVGAGKGVIRSMLCNGNYHAEVIPVDFAINSLIAIAHKTATNEKN 301
Query: 480 TETQVFNISSNEVEAITWGEIISRGKQLIYQYPLEAGLWYPNGQIRSNRFWHYFFVIFTQ 539
T V+NI+ + V ITWGEI+ +GK++ ++YP E +WYP+G IR+++F H V F
Sbjct: 302 TSIPVYNITQSGVVPITWGEILGKGKKIAHRYPFEGQIWYPDGDIRNSKFVHNLIVFFFH 361
Query: 540 ILPAYLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLLALHDNISEKD 599
I+PAY +DF+M++ RQK F+VR+QNRI +G+ LL+YFTTR W F N LL L ++ KD
Sbjct: 362 IIPAYFIDFLMLIFRQKRFMVRIQNRISVGLELLQYFTTREWVFHNTNLLTLWSGMNPKD 421
Query: 600 KQTFYIANIDVNIDDYLKTIILGARQYCLKEPLTTLPKARRQ 641
K+ F I + ++ ++Y+KT +LGARQYC+KE L+TLPKARR
Sbjct: 422 KEIFPIDLLSIDDNEYIKTCVLGARQYCMKEDLSTLPKARRH 463
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340729197|ref|XP_003402893.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 224/482 (46%), Positives = 323/482 (67%), Gaps = 29/482 (6%)
Query: 207 ADMGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAE 266
++ ++ +Y G+ V VTGGTG MGKVL+EKLL SC D+ K+YIL R KRG TP+ R+ E
Sbjct: 2 TELSEIQSFYKGKVVFVTGGTGLMGKVLIEKLLYSCSDLNKIYILIRPKRGRTPEMRVDE 61
Query: 267 FSKLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLE 326
KL +F+R++K+ P + ++ + GD+ NLG+ + L +L E VVF+ AA+LKLE
Sbjct: 62 MFKLLMFQRIQKQKPETMKKVIPLSGDVGMKNLGLTNEQLEILINETDVVFHFAATLKLE 121
Query: 327 AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIM 386
++LK+ + NT GT+R++++ KMKKL AF+H STAFC+ D++ L+EK+Y S PHD+M
Sbjct: 122 SKLKDAIDMNTVGTKRVIELGRKMKKLKAFVHLSTAFCYADKEELDEKVYESSADPHDVM 181
Query: 387 RAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQE 446
R ++W+D+ I +TPK+LG HPN+YT++KRL E LV + LP I RPSIV P+ E
Sbjct: 182 RLVQWLDESAIDLITPKVLGLHPNTYTYSKRLAEKLVADEYPDLPCSIARPSIVTPALAE 241
Query: 447 PVPGWVDSLNGPVGVLVASGKGVVRSMILN----------DLS----------------- 479
P+PGWVD+LNGPVG++V +GKGV+RSM+ N DL+
Sbjct: 242 PLPGWVDNLNGPVGLMVGAGKGVIRSMLCNGSYHAEVIPVDLAINALIAIAYRTATTTKD 301
Query: 480 TETQVFNISSNEVEAITWGEIISRGKQLIYQYPLEAGLWYPNGQIRSNRFWHYFFVIFTQ 539
T QV+N++ + + ITWGE++ +GK++ Y+YP E +WYP G I S++F H V
Sbjct: 302 TSIQVYNMTQSGILPITWGEVLGKGKKIAYEYPFEGQIWYPTGDIHSSKFVHNLIVFLFH 361
Query: 540 ILPAYLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLLALHDNISEKD 599
I+PAY +DF+M++ RQK F+VR+Q RI +G+ +L+YFT R W F N LL + +S KD
Sbjct: 362 IIPAYFIDFLMLIFRQKRFMVRIQRRISVGLEVLQYFTMREWTFHNSNLLIMRQEMSPKD 421
Query: 600 KQTFYIANIDVNIDDYLKTIILGARQYCLKEPLTTLPKARRQIKFLYVLDRIGHALILFL 659
K+ F I + ++ DY+KT +LGARQYC+KE L+TLP ARR LYV+ I A+ LF
Sbjct: 422 KEIFPIDFLSIDHADYIKTCVLGARQYCMKENLSTLPNARRHQAILYVIHII--AVYLFY 479
Query: 660 LG 661
+G
Sbjct: 480 IG 481
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380017038|ref|XP_003692473.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1211), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/482 (46%), Positives = 328/482 (68%), Gaps = 29/482 (6%)
Query: 207 ADMGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAE 266
+++ ++ +Y G+++ VTGGTG MGKVL+EKLL SC DI K+Y+L R KRG +P+ R+ E
Sbjct: 2 SELTEIQSFYKGKNIFVTGGTGLMGKVLIEKLLYSCSDINKIYVLIRPKRGRSPETRMDE 61
Query: 267 FSKLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLE 326
KLP+F+R+RK+ L ++ + GD+ NLG+ + +L E+ +VF+ AA+LKLE
Sbjct: 62 VFKLPMFQRVRKQKSQMLKKVVTLNGDVSVENLGLTEEQSELLMNEIDIVFHFAANLKLE 121
Query: 327 AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIM 386
A+LK+ + NT GT+R+L++A KMKKL F+H STAFC+ D++ L+EK+Y +P PHD+M
Sbjct: 122 AKLKDAIEMNTVGTRRILELAKKMKKLKMFVHLSTAFCYADKEELDEKVYDAPTDPHDVM 181
Query: 387 RAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQE 446
R +EW+D+ I +TPK+L HPN+YT++KRL E LV + LP +I RPSIV P+ E
Sbjct: 182 RMIEWLDESAIDLITPKLLNLHPNTYTYSKRLAEKLVADEYPNLPCIIARPSIVTPALTE 241
Query: 447 PVPGWVDSLNGPVGVLVASGKGVVRSMILNDL---------------------------S 479
P+PGWVD+LNGPVG++V +GKGV+RSM+ N+
Sbjct: 242 PLPGWVDNLNGPVGIMVGAGKGVIRSMLCNEKYHAEVMPVDFAINFLISIAHKATTIEKK 301
Query: 480 TETQVFNISSNEVEAITWGEIISRGKQLIYQYPLEAGLWYPNGQIRSNRFWHYFFVIFTQ 539
T V+NI+ + V ITWGE++ +GK++ YQYP E +WYP+G I +++F H V F
Sbjct: 302 TSIPVYNITQSGVVPITWGEVLRKGKKIAYQYPFEGQIWYPSGDIHNSKFVHNLIVFFFH 361
Query: 540 ILPAYLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLLALHDNISEKD 599
I+PAY +DF+M++ RQK F+VR+QNRI +G+ LL+YFTTR W F N LL L ++ KD
Sbjct: 362 IVPAYFIDFLMLIFRQKRFMVRIQNRISVGLELLQYFTTREWVFHNTNLLILWKEMNPKD 421
Query: 600 KQTFYIANIDVNIDDYLKTIILGARQYCLKEPLTTLPKARRQIKFLYVLDRIGHALILFL 659
++ F I + ++ D+Y+KT ILGARQYC+KE L+TLPKARR +Y++ I A+ LF
Sbjct: 422 REIFPIDLLSIDEDEYIKTCILGARQYCMKENLSTLPKARRHQAVMYIIHLI--AIYLFY 479
Query: 660 LG 661
G
Sbjct: 480 FG 481
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307168071|gb|EFN61377.1| Fatty acyl-CoA reductase 1 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 238/466 (51%), Positives = 322/466 (69%), Gaps = 29/466 (6%)
Query: 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLP 271
+ +Y +++ +TG +GFMGKVL+EKLL SC D+ K+YIL RAKRG + RL + KLP
Sbjct: 8 IQSFYTDKTIFITGASGFMGKVLIEKLLYSCSDLNKIYILMRAKRGRSFDNRLEDIFKLP 67
Query: 272 VFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKE 331
+F+R+R E P L ++ + GDI NLG D +L EV++VF+ AA+L+LEA+LK+
Sbjct: 68 LFQRIRTEKPQVLKKVIPLNGDICSDNLGFTDEQRELLINEVNLVFHCAATLRLEAKLKD 127
Query: 332 NVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEW 391
V N GT+RLL++A +MK L AF+H STAFCH DQK L E+ Y SP PHDIMR +EW
Sbjct: 128 AVEMNMIGTKRLLNLAKEMKHLEAFVHLSTAFCHVDQKELGERTYNSPDDPHDIMRLIEW 187
Query: 392 MDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGW 451
+D+ +I +TPK+L PHPN+YT++KRL ETLV LP I RPSIV+PS++EP PGW
Sbjct: 188 LDENSIDFITPKLLHPHPNTYTYSKRLAETLVANEFPNLPCSIARPSIVIPSYKEPFPGW 247
Query: 452 VDSLNGPVGVLVASGKGVVRSM---------------ILNDL-------------STETQ 483
VD+LNGP+G+LV GKGV+RSM +N+L S
Sbjct: 248 VDNLNGPIGLLVGGGKGVIRSMHCNGNYNAEVIPVDFAINNLIIIAYKTATSLRNSKSIP 307
Query: 484 VFNISSNEVEAITWGEIISRGKQLIYQYPLEAGLWYPNGQIRSNRFWHYFFVIFTQILPA 543
VFNI+ ++ ITWGEI+ +G+++IY+YP E +WYP+G IRSN+F H FV F QI+PA
Sbjct: 308 VFNITQSDSTPITWGEILDKGREVIYEYPFEGQVWYPDGDIRSNKFIHNIFVFFFQIIPA 367
Query: 544 YLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLLAL-HDNISEKDKQT 602
Y +DF+M++ RQK F+VR+QNRI G+ +L+YFTTR W F NK+L+AL D +S DK+
Sbjct: 368 YFIDFLMLIFRQKRFMVRLQNRILNGLAVLQYFTTRQWIFYNKKLIALCVDELSPLDKEI 427
Query: 603 FYIANIDVNIDDYLKTIILGARQYCLKEPLTTLPKARRQIKFLYVL 648
F +V+I +YLK I+LGARQYC+KE L+TLPKARR K +YV+
Sbjct: 428 FPPLVFNVDITEYLKHIVLGARQYCMKEDLSTLPKARRHQKMMYVI 473
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350416860|ref|XP_003491139.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 464 bits (1193), Expect = e-127, Method: Compositional matrix adjust.
Identities = 221/482 (45%), Positives = 320/482 (66%), Gaps = 29/482 (6%)
Query: 207 ADMGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAE 266
+++ ++ +Y G+ + VTGGTG MGKVL+EKLL SC D+ K+YIL R KRG TP R+ E
Sbjct: 2 SELSEIQSFYKGKVIFVTGGTGLMGKVLIEKLLYSCSDLNKIYILIRPKRGRTPDMRVDE 61
Query: 267 FSKLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLE 326
KL +F+R++K+ P + ++ + GD+ NLG+ + L +L E VVF+ AA+LKLE
Sbjct: 62 MFKLLMFQRIQKQKPEAMKKVIPLSGDVGMKNLGLTNEQLEILINETDVVFHFAATLKLE 121
Query: 327 AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIM 386
++LK+ + NT GT+R++++ KMKKL AF+H STAFC+ D++ L+EK+Y S PHD+M
Sbjct: 122 SKLKDAIDMNTVGTKRVIELGRKMKKLKAFVHLSTAFCYADKEELDEKVYESSADPHDVM 181
Query: 387 RAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQE 446
R ++W+D+ I +TPK+LG HPN+YT++KRL E LV + LP I RPSIV P+ E
Sbjct: 182 RLVQWLDESAIDLITPKVLGLHPNTYTYSKRLAEKLVADEYPDLPCCIARPSIVTPALAE 241
Query: 447 PVPGWVDSLNGPVGVLVASGKGVVRSMILN----------DLS----------------- 479
P+PGWVD+LNGPVG++V +GKGV+RSM+ N DL+
Sbjct: 242 PLPGWVDNLNGPVGLMVGAGKGVIRSMLCNGSYHAEVIPVDLAINALIATAHRTATTTKD 301
Query: 480 TETQVFNISSNEVEAITWGEIISRGKQLIYQYPLEAGLWYPNGQIRSNRFWHYFFVIFTQ 539
T V+N++ + + ITWGE++ +GK++ Y+YP E +WYP G I S++F H V
Sbjct: 302 TSIPVYNMTQSGILPITWGEVLGKGKKIAYEYPFEGQIWYPTGDIHSSKFVHNLIVFLFH 361
Query: 540 ILPAYLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLLALHDNISEKD 599
I+PAY +DF+M++ RQK F+VR+Q RI +G+ +L+YFT R W F N LL + +S KD
Sbjct: 362 IIPAYFIDFLMLIFRQKRFMVRIQRRISVGLEVLQYFTMREWTFHNSNLLIMRQEMSAKD 421
Query: 600 KQTFYIANIDVNIDDYLKTIILGARQYCLKEPLTTLPKARRQIKFLYVLDRIGHALILFL 659
K+ F I ++ +Y+KT +LGARQYC+KE L+TLP ARR LYV+ I A+ LF
Sbjct: 422 KEIFPIDFSSIDHAEYIKTCVLGARQYCMKENLSTLPSARRHQAILYVIHII--AVYLFY 479
Query: 660 LG 661
G
Sbjct: 480 FG 481
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 851 | ||||||
| FB|FBgn0043792 | 506 | CG30427 [Drosophila melanogast | 0.357 | 0.600 | 0.462 | 4.7e-116 | |
| FB|FBgn0039131 | 531 | CG12268 [Drosophila melanogast | 0.326 | 0.523 | 0.412 | 9.6e-101 | |
| FB|FBgn0033464 | 517 | CG1441 [Drosophila melanogaste | 0.351 | 0.578 | 0.403 | 8.9e-94 | |
| FB|FBgn0034145 | 625 | CG5065 [Drosophila melanogaste | 0.349 | 0.475 | 0.449 | 1.4e-93 | |
| ZFIN|ZDB-GENE-060503-367 | 515 | si:dkey-97m3.1 "si:dkey-97m3.1 | 0.353 | 0.584 | 0.419 | 1e-86 | |
| UNIPROTKB|Q5ZM72 | 515 | FAR1 "Fatty acyl-CoA reductase | 0.352 | 0.582 | 0.395 | 3.6e-80 | |
| UNIPROTKB|G8ENM4 | 515 | FAR1 "Uncharacterized protein" | 0.352 | 0.582 | 0.385 | 5.8e-80 | |
| UNIPROTKB|A5PJQ0 | 515 | FAR1 "Uncharacterized protein" | 0.352 | 0.582 | 0.388 | 5.8e-80 | |
| RGD|1565966 | 515 | Far2 "fatty acyl CoA reductase | 0.368 | 0.609 | 0.394 | 1.5e-79 | |
| UNIPROTKB|D4A2S1 | 503 | Far2 "Protein Far2" [Rattus no | 0.368 | 0.624 | 0.394 | 1.5e-79 |
| FB|FBgn0043792 CG30427 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 742 (266.3 bits), Expect = 4.7e-116, Sum P(2) = 4.7e-116
Identities = 142/307 (46%), Positives = 207/307 (67%)
Query: 208 DMGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEF 267
D+ V +Y +++ +TG +GFMGKVLLEKLL SC + +V I+CR KRG P+ RL E
Sbjct: 4 DLSPVQEYYKDKTIFITGASGFMGKVLLEKLLYSCHSLKEVIIICRPKRGKAPETRLEEM 63
Query: 268 SKLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEA 327
KLP+F+R++ E P L R+ I +GD+ LG+ L + E ++VF+ AA+LKLE
Sbjct: 64 FKLPIFQRIKDERPEMLKRVTIYQGDVTFDQLGLSGESLKHVTENTNIVFHMAATLKLEG 123
Query: 328 ELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMR 387
L++ + N GT+R L++A +MK+L AFIH STAFC+ DQ V+ EK+Y P P D+MR
Sbjct: 124 NLRDAIDMNLLGTRRALNVAKEMKQLEAFIHLSTAFCNCDQDVMYEKVYEFPHKPEDLMR 183
Query: 388 AMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEP 447
EWMD +T+ +TP +L PHPN+YT++KRL E LV ++ +PV+I RPSIV P+ EP
Sbjct: 184 LAEWMDVKTLDAITPDLLKPHPNTYTYSKRLAELLVRDHYESMPVIIARPSIVTPAVAEP 243
Query: 448 VPGWVDSLNGPVGVLVASGKGVVRSMILN-DLSTETQVFNISSNEVEAITWGEIISRGKQ 506
+PGWVD++NGP GVL+ +GKGV+RSMI N +L +E +I+ N + + + ++ +
Sbjct: 244 LPGWVDNMNGPTGVLIGAGKGVIRSMICNGELKSEVIPVDIAINGLILLPYHNSLAEKRP 303
Query: 507 LIYQYPL 513
L Q P+
Sbjct: 304 L--QIPV 308
|
|
| FB|FBgn0039131 CG12268 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 662 (238.1 bits), Expect = 9.6e-101, Sum P(2) = 9.6e-101
Identities = 115/279 (41%), Positives = 190/279 (68%)
Query: 198 DVKRGSCECADMGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRG 257
D+ R +C + D+A++YA +++L+TG TGFMGKVL+EKLLRSC D+ +Y+L R K+G
Sbjct: 2 DILRSDADCGE-SDIAKFYANKTILITGATGFMGKVLVEKLLRSCADLNVIYLLIRTKKG 60
Query: 258 LTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVF 317
+ P R ++ K +F +L ++ P + ++ +++GD+L+ +LG+ +D L V VVF
Sbjct: 61 VDPSVRKEQYFKCVIFGKLLEKNPGIVDKVRVVKGDLLEPDLGLSANDTNTLASNVEVVF 120
Query: 318 NGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYP 377
+ AA+++ + L+ V N GT ++L +A KM +L A +H ST++C ++ VLEE+ YP
Sbjct: 121 HCAANVRFDQPLRPMVMMNVVGTLKVLRLAEKMSQLQALVHVSTSYCQCNESVLEERAYP 180
Query: 378 SPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRP 437
+P +P I+ +E MDDE + ++TPK+L PN+Y ++K L+E L+ Y KLP++I RP
Sbjct: 181 APQNPFSIIEMVETMDDEALAEITPKLLNGLPNTYAYSKALSEDLICRYNNKLPIIITRP 240
Query: 438 SIVLPSFQEPVPGWVDSLNGPVGVLVASGKGVVRSMILN 476
SIV + EP+PGW++ +NGP G+++ + +GV+RSM N
Sbjct: 241 SIVTAAIHEPLPGWIEGVNGPTGLMIGAARGVIRSMHCN 279
|
|
| FB|FBgn0033464 CG1441 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 637 (229.3 bits), Expect = 8.9e-94, Sum P(2) = 8.9e-94
Identities = 122/302 (40%), Positives = 196/302 (64%)
Query: 202 GSCECADMGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPK 261
G + ++ +A + GRS+ +TGGTGF+GKVL+EKLLRSC + ++Y+L R K+G P+
Sbjct: 18 GEIDDNEVDRIAECFKGRSLFITGGTGFLGKVLVEKLLRSCGGLKRIYLLIRPKKGKDPQ 77
Query: 262 ARLAEFSKLPVFERLRKECPAQ--LSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNG 319
R+ + + +F+++++ + L ++ I GD+L LGI + DL L++EVS+V++
Sbjct: 78 ERIKDIFQNVLFDQVKQMRGEEHILQQVVAIAGDVLSPGLGISEKDLETLRQEVSIVYHC 137
Query: 320 AASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSP 379
AA+++ + L+ V NTRGT+ +L++AL +K L F + STA+CH K L EK Y P
Sbjct: 138 AATVRFDEPLRNAVFMNTRGTKYMLELALTLKHLDFFAYCSTAYCHLHVKTLYEKPYDPP 197
Query: 380 VSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSI 439
PH +M+A EW+ D+ + + K+LG PN+Y +TK L E LV E +LP VI+RPSI
Sbjct: 198 ADPHKVMQACEWLTDDEVATIERKVLGAIPNTYAYTKSLAEALVVEKFEELPAVILRPSI 257
Query: 440 VLPSFQEPVPGWVDSLNGPVGVLVASGKGVVRSMILNDLST-ETQVFNISSNEVEAITWG 498
V+P ++EP+PGW D++NGP G+L+ +GKGV+R+M N + +++ N + +W
Sbjct: 258 VIPIWKEPIPGWTDNINGPTGLLIGAGKGVIRTMYCNSSGYGDFLPVDVAVNGILVASWR 317
Query: 499 EI 500
I
Sbjct: 318 NI 319
|
|
| FB|FBgn0034145 CG5065 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 662 (238.1 bits), Expect = 1.4e-93, Sum P(2) = 1.4e-93
Identities = 134/298 (44%), Positives = 189/298 (63%)
Query: 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLP 271
+A++YAGRSV +TGGTGFMGKVL+EKLLRSCP+I +Y+L R KRG ARL E P
Sbjct: 119 IAQFYAGRSVFITGGTGFMGKVLVEKLLRSCPEIRNIYLLIRPKRGQEVSARLTELLNAP 178
Query: 272 VFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKE 331
+FE LR+E P +LS++ I GDI LGI + D +L VSVVF+ AA++K + +LK
Sbjct: 179 LFESLRQEKPKELSKVIPISGDITSEELGISEKDQNLLCRNVSVVFHSAATVKFDEKLKL 238
Query: 332 NVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEW 391
+V N GT+RL+++ +M L A IH STA+C+ D+ + E +Y P +P DI+ + W
Sbjct: 239 SVTINMLGTKRLVELCHRMLSLDALIHVSTAYCNCDRTDVSEVIYAPPYNPDDIISLINW 298
Query: 392 MDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGW 451
+ ++ + QLTP+++G PN+YTFTK L E ++ + LPV IVRPSIV S EP GW
Sbjct: 299 LPEDILDQLTPRLIGKRPNTYTFTKALAEHMLLKEAGNLPVAIVRPSIVTASLNEPFAGW 358
Query: 452 VDSLNGPVGVLVASGKGVVRSMILNDLSTETQV-FNISSNEVEAITWGEIISRGKQLI 508
VD+ NGP G++ A KG+ R+M+ V +I N + A W + L+
Sbjct: 359 VDNFNGPTGLVSALAKGMFRTMMCEKNYVADMVPVDIVINLMIAAAWRTATRKSNNLL 416
|
|
| ZFIN|ZDB-GENE-060503-367 si:dkey-97m3.1 "si:dkey-97m3.1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 669 (240.6 bits), Expect = 1.0e-86, Sum P(2) = 1.0e-86
Identities = 127/303 (41%), Positives = 198/303 (65%)
Query: 209 MGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFS 268
MG ++ WYAG++VL+TG TGFMGKVL+EKLLRSCPD+ +YIL R K G + R+ +
Sbjct: 1 MGSISEWYAGKNVLITGATGFMGKVLVEKLLRSCPDVNALYILVRPKAGQSMSERVQDMM 60
Query: 269 KLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAE 328
K +F+R+R++ P ++ I +++Q L I D+ L V +VF+ AA+++ +
Sbjct: 61 KCKLFDRVREDNPEFHQKIIAISSELMQPGLAISAQDVETLTSRVHIVFHCAATIRFDEP 120
Query: 329 LKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRA 388
LK + N TQ+LL +A +M++L AFIH STA+ + +++ ++E +YP PV P ++ +
Sbjct: 121 LKHALQLNVMATQQLLSLAQQMQQLQAFIHISTAYANCNRRHIDELIYPPPVEPRKLIDS 180
Query: 389 MEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPV 448
+EWMD+ I+ +TP+++G PN+YT+TK L E +V + KL V IVRPSIV S+QEP
Sbjct: 181 LEWMDESIIRDITPRLIGDWPNTYTYTKALAECVVQQESAKLNVGIVRPSIVGASWQEPF 240
Query: 449 PGWVDSLNGPVGVLVASGKGVVRSM-ILNDLSTETQVFNISSNEVEAITWGEIISRGKQ- 506
PGW+D+ NGP GV +A+GKG++R+M ND + ++ N A W +++ K
Sbjct: 241 PGWIDNFNGPSGVFIAAGKGILRTMRASNDAVADLIPVDVVINLTLAAGWYTAVNKPKTA 300
Query: 507 LIY 509
L+Y
Sbjct: 301 LVY 303
|
|
| UNIPROTKB|Q5ZM72 FAR1 "Fatty acyl-CoA reductase 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 627 (225.8 bits), Expect = 3.6e-80, Sum P(2) = 3.6e-80
Identities = 119/301 (39%), Positives = 191/301 (63%)
Query: 209 MGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFS 268
M + +Y G++VL+TG TGFMGKVLLEKLLRSCP + VY+L R K G TP+AR+ E +
Sbjct: 1 MVSIPEYYEGKNVLLTGATGFMGKVLLEKLLRSCPKVKAVYVLVRPKAGQTPEARIEEIT 60
Query: 269 KLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAE 328
+F+RLR+E P ++ +I ++ Q L + + L E ++++F+ AA+++
Sbjct: 61 SCKLFDRLREEQPDFKEKIIVITSELTQPELDLSNPVKEKLIECINIIFHCAATVRFNET 120
Query: 329 LKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRA 388
L++ V N T++LL +A +M L F+H STA+ + ++K +EE +YP PV P +M +
Sbjct: 121 LRDAVQLNVLSTKQLLSLAQQMTNLEVFMHVSTAYAYCNRKHIEEVVYPPPVDPKKLMDS 180
Query: 389 MEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPV 448
+EWMDD + +TPK++G PN+YT+TK L E +V + +L I+RPSIV S++EP
Sbjct: 181 LEWMDDSLVNDITPKLIGDRPNTYTYTKALAEYVVQQEGARLNTAIIRPSIVGASWKEPF 240
Query: 449 PGWVDSLNGPVGVLVASGKGVVRSM-ILNDLSTETQVFNISSNEVEAITWGEIISRGKQL 507
PGW+D+ NGP G+ +A+GKG++R+M N + ++ N A W ++R + +
Sbjct: 241 PGWIDNFNGPSGLFIAAGKGILRTMRASNGAVADLVPVDVVVNMTLAAAWYSGVNRPRNI 300
Query: 508 I 508
+
Sbjct: 301 M 301
|
|
| UNIPROTKB|G8ENM4 FAR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 617 (222.3 bits), Expect = 5.8e-80, Sum P(2) = 5.8e-80
Identities = 116/301 (38%), Positives = 189/301 (62%)
Query: 209 MGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFS 268
M + +Y G+++L+TG TGF+GKVLLEKLLRSCP + VY+L R K G TPK R+ E
Sbjct: 1 MVSIPEYYEGKNILLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPKERVEEAI 60
Query: 269 KLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAE 328
+F+RLR E P ++ I ++ Q L + + D + + +++F+ AA+++
Sbjct: 61 SGKLFDRLRDENPDFREKIIAINSELTQPKLALSEEDKKTIIDSTNIIFHCAATVRFNEN 120
Query: 329 LKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRA 388
L++ V N T++L+ +A +MK L F+H STA+ + ++K ++E +YP PV P ++ +
Sbjct: 121 LRDAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPQKLINS 180
Query: 389 MEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPV 448
+EWMDD + +TPK++G PN+Y +TK L E +V + KL V IVRPSIV S++EP
Sbjct: 181 LEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEPF 240
Query: 449 PGWVDSLNGPVGVLVASGKGVVRSM-ILNDLSTETQVFNISSNEVEAITWGEIISRGKQL 507
PGW+D+ NGP G+ +A+GKG++R+M N+ + ++ N A W ++R + +
Sbjct: 241 PGWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVNRPRNI 300
Query: 508 I 508
+
Sbjct: 301 M 301
|
|
| UNIPROTKB|A5PJQ0 FAR1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 616 (221.9 bits), Expect = 5.8e-80, Sum P(2) = 5.8e-80
Identities = 117/301 (38%), Positives = 191/301 (63%)
Query: 209 MGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFS 268
M + +Y G++VL+TG TGF+GKVLLEKLLRSCP + VY+L R K G TP+ R+ E
Sbjct: 1 MVSIPEYYEGKNVLLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEVI 60
Query: 269 KLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAE 328
+F+RLR E P ++ I ++ Q L + + D ++ + +++F+ AA+++
Sbjct: 61 SGKLFDRLRDENPDFREKIIAINSELTQPKLALSEEDKEIIIDSTNIIFHCAATVRFNEN 120
Query: 329 LKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRA 388
L++ V N T++L+ +A +MK L F+H STA+ + ++K ++E +YP PV P ++ +
Sbjct: 121 LRDAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDS 180
Query: 389 MEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPV 448
+EWMDD + +TPK++G PN+Y +TK L E +V + KL VVIVRPSIV S++EP
Sbjct: 181 LEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVVIVRPSIVGASWKEPF 240
Query: 449 PGWVDSLNGPVGVLVASGKGVVRSM-ILNDLSTETQVFNISSNEVEAITWGEIISRGKQL 507
PGW+D+ NGP G+ +A+GKG++R+M N+ + ++ N A W ++R + +
Sbjct: 241 PGWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNMSLAAAWYSGVNRPRNI 300
Query: 508 I 508
+
Sbjct: 301 M 301
|
|
| RGD|1565966 Far2 "fatty acyl CoA reductase 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 621 (223.7 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
Identities = 126/319 (39%), Positives = 194/319 (60%)
Query: 209 MGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFS 268
M +A +Y+ +S+L+TG TGF+GKVL+EKL R+ P + +YIL R K G T + R+ +
Sbjct: 1 MSMIAAFYSNKSILITGATGFLGKVLMEKLFRTSPHLKVIYILVRPKSGQTLQERVFQIL 60
Query: 269 KLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAE 328
+FER+++ CP ++ I D+ Q + I D+ L ++VF+ AA+++ +A
Sbjct: 61 NSKLFERVKEVCPNVHEKIRPISADLNQRDFAISKEDMQELLSCTNIVFHCAATVRFDAH 120
Query: 329 LKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRA 388
L+E V N TQ+LL +A +M KL AFIH STAF + + ++E +YP PV P I+ +
Sbjct: 121 LREAVQLNVTATQQLLLMASEMPKLEAFIHISTAFSNCNLSHIDEVIYPCPVEPRKIIDS 180
Query: 389 MEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPV 448
MEW+DD I+++TPK++G PN+YT+TK L E +V + L V IVRPSIV ++QEP
Sbjct: 181 MEWLDDSIIEEITPKLIGDRPNTYTYTKALGEVVVQQESGNLNVAIVRPSIVGATWQEPF 240
Query: 449 PGWVDSLNGPVGVLVASGKGVVRSMILNDLSTETQV-FNISSNEVEAITWGEIISRGKQL 507
PGWVD+LNGP G+++A+GKG +RS+ ++ + + N A+ W + R K
Sbjct: 241 PGWVDNLNGPSGLIIATGKGFLRSIKATPMAVADLIPVDTVVNLTIAVGWYTAVHRPKST 300
Query: 508 IYQYPLEAGL----WYPNG 522
+ + L WY G
Sbjct: 301 LIYHSTSGNLNPCNWYEMG 319
|
|
| UNIPROTKB|D4A2S1 Far2 "Protein Far2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 621 (223.7 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
Identities = 126/319 (39%), Positives = 194/319 (60%)
Query: 209 MGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFS 268
M +A +Y+ +S+L+TG TGF+GKVL+EKL R+ P + +YIL R K G T + R+ +
Sbjct: 1 MSMIAAFYSNKSILITGATGFLGKVLMEKLFRTSPHLKVIYILVRPKSGQTLQERVFQIL 60
Query: 269 KLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAE 328
+FER+++ CP ++ I D+ Q + I D+ L ++VF+ AA+++ +A
Sbjct: 61 NSKLFERVKEVCPNVHEKIRPISADLNQRDFAISKEDMQELLSCTNIVFHCAATVRFDAH 120
Query: 329 LKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRA 388
L+E V N TQ+LL +A +M KL AFIH STAF + + ++E +YP PV P I+ +
Sbjct: 121 LREAVQLNVTATQQLLLMASEMPKLEAFIHISTAFSNCNLSHIDEVIYPCPVEPRKIIDS 180
Query: 389 MEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPV 448
MEW+DD I+++TPK++G PN+YT+TK L E +V + L V IVRPSIV ++QEP
Sbjct: 181 MEWLDDSIIEEITPKLIGDRPNTYTYTKALGEVVVQQESGNLNVAIVRPSIVGATWQEPF 240
Query: 449 PGWVDSLNGPVGVLVASGKGVVRSMILNDLSTETQV-FNISSNEVEAITWGEIISRGKQL 507
PGWVD+LNGP G+++A+GKG +RS+ ++ + + N A+ W + R K
Sbjct: 241 PGWVDNLNGPSGLIIATGKGFLRSIKATPMAVADLIPVDTVVNLTIAVGWYTAVHRPKST 300
Query: 508 IYQYPLEAGL----WYPNG 522
+ + L WY G
Sbjct: 301 LIYHSTSGNLNPCNWYEMG 319
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1.103 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 851 | |||
| cd05236 | 320 | cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F | 1e-108 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 3e-69 | |
| PLN02996 | 491 | PLN02996, PLN02996, fatty acyl-CoA reductase | 2e-35 | |
| PLN02503 | 605 | PLN02503, PLN02503, fatty acyl-CoA reductase 2 | 3e-32 | |
| cd09071 | 92 | cd09071, FAR_C, C-terminal domain of fatty acyl Co | 1e-28 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 2e-24 | |
| pfam03015 | 94 | pfam03015, Sterile, Male sterility protein | 3e-22 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 8e-21 | |
| TIGR01746 | 367 | TIGR01746, Thioester-redct, thioester reductase do | 5e-17 | |
| cd09071 | 92 | cd09071, FAR_C, C-terminal domain of fatty acyl Co | 1e-15 | |
| COG3320 | 382 | COG3320, COG3320, Putative dehydrogenase domain of | 9e-14 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 2e-13 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 8e-12 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 2e-11 | |
| pfam03015 | 94 | pfam03015, Sterile, Male sterility protein | 4e-10 | |
| TIGR03443 | 1389 | TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh | 7e-09 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 1e-07 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 3e-07 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 2e-06 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 2e-06 | |
| COG1088 | 340 | COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel | 3e-06 | |
| TIGR01181 | 317 | TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd | 2e-05 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 3e-05 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 4e-05 | |
| cd05265 | 250 | cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | 4e-05 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 5e-05 | |
| pfam02719 | 280 | pfam02719, Polysacc_synt_2, Polysaccharide biosynt | 5e-05 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 6e-05 | |
| cd05240 | 306 | cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase | 1e-04 | |
| cd05370 | 228 | cd05370, SDR_c2, classical (c) SDR, subgroup 2 | 4e-04 | |
| COG1086 | 588 | COG1086, COG1086, Predicted nucleoside-diphosphate | 5e-04 | |
| PLN02260 | 668 | PLN02260, PLN02260, probable rhamnose biosynthetic | 8e-04 | |
| pfam00106 | 167 | pfam00106, adh_short, short chain dehydrogenase | 0.001 | |
| cd08953 | 436 | cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup | 0.003 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 0.004 |
| >gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 335 bits (861), Expect = e-108
Identities = 138/320 (43%), Positives = 199/320 (62%), Gaps = 26/320 (8%)
Query: 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRK 278
+SVL+TG TGF+GKVLLEKLLRSCPDIGK+Y+L R K G + + RL E K +F+R R
Sbjct: 1 KSVLITGATGFLGKVLLEKLLRSCPDIGKIYLLIRGKSGQSAEERLRELLKDKLFDRGRN 60
Query: 279 ECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTR 338
P S++ IEGD+ + NLG+ D DL L EEV+++ + AA++ + L E ++ N
Sbjct: 61 LNPLFESKIVPIEGDLSEPNLGLSDEDLQTLIEEVNIIIHCAATVTFDERLDEALSINVL 120
Query: 339 GTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIK 398
GT RLL++A + KKL AF+H STA+ + D++++EEK+YP P P ++ +E MDD ++
Sbjct: 121 GTLRLLELAKRCKKLKAFVHVSTAYVNGDRQLIEEKVYPPPADPEKLIDILELMDDLELE 180
Query: 399 QLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDSLNGP 458
+ TPK+LG HPN+YTFTK L E LV + + LP+VIVRPSIV + +EP PGW+D+ NGP
Sbjct: 181 RATPKLLGGHPNTYTFTKALAERLVLKERGNLPLVIVRPSIVGATLKEPFPGWIDNFNGP 240
Query: 459 VGVLVASGKGVVRSM--------------------------ILNDLSTETQVFNISSNEV 492
G+ +A GKG++R+M E +V++ S++V
Sbjct: 241 DGLFLAYGKGILRTMNADPNAVADIIPVDVVANALLAAAAYSGVRKPRELEVYHCGSSDV 300
Query: 493 EAITWGEIISRGKQLIYQYP 512
TWGE Q + + P
Sbjct: 301 NPFTWGEAEELINQYLKKNP 320
|
SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 228 bits (584), Expect = 3e-69
Identities = 98/254 (38%), Positives = 137/254 (53%), Gaps = 32/254 (12%)
Query: 223 VTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-AEFSKLPVFERLRKECP 281
+TG TGF+GKVLLEKLLRS P++ K+Y L RAK G + RL E K +F+RL+
Sbjct: 1 LTGATGFLGKVLLEKLLRSTPEV-KIYCLVRAKDGESALERLRQELLKYGLFDRLK---- 55
Query: 282 AQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQ 341
L R+ + GD+ + NLG+ D D L EEV V+ + AA++ + A N GT+
Sbjct: 56 -ALERIIPVAGDLSEPNLGLSDEDFQELAEEVDVIIHNAATVNFVEPYSDLRATNVLGTR 114
Query: 342 RLLDIALKMKKLVAFIHFSTAFCHPD-QKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQL 400
+L +A +MKKL F H STA+ + + +LEEK + +
Sbjct: 115 EVLRLAKQMKKL-PFHHVSTAYVNGERGGLLEEK-------------------PYKLDED 154
Query: 401 TPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDSLN-GPV 459
P +LG PN YT +K L E LV E LPVVI RPSI+ E GW++ + GP
Sbjct: 155 EPALLGGLPNGYTQSKWLAEQLVREAAGGLPVVIYRPSIITG---ESRTGWINGDDFGPR 211
Query: 460 GVLVASGKGVVRSM 473
G+L +G GV+ +
Sbjct: 212 GLLGGAGLGVLPDI 225
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|215538 PLN02996, PLN02996, fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 2e-35
Identities = 88/295 (29%), Positives = 149/295 (50%), Gaps = 33/295 (11%)
Query: 208 DMGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-AE 266
+ G ++ +++LVTG TGF+ K+ +EK+LR P++ K+Y+L RA + RL E
Sbjct: 1 EEGSCVQFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDE 60
Query: 267 FSKLPVFERLRKECPAQLS-----RLHIIEGDILQANLGIKDSDLL-MLQEEVSVVFNGA 320
+F+ LR++ L+ ++ + GDI +LG+KDS+L + +E+ +V N A
Sbjct: 61 VIGKDLFKVLREKLGENLNSLISEKVTPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLA 120
Query: 321 ASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAF-CHPDQKVLEEKLYP-- 377
A+ + + NT G +L+ A K K+ +H STA+ C ++ EK +
Sbjct: 121 ATTNFDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAYVCGEKSGLILEKPFHMG 180
Query: 378 ---SPVSPHDIMRAMEWMD------------DETIKQLTPKILGPH-------PNSYTFT 415
+ DI + + +E I Q K LG PN+Y FT
Sbjct: 181 ETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQ-AMKDLGMERAKLHGWPNTYVFT 239
Query: 416 KRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDSLNGPVGVLVASGKGVV 470
K + E L+ +K LP+VI+RP+++ +++EP PGW++ L V+V GKG +
Sbjct: 240 KAMGEMLLGNFKENLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKL 294
|
Length = 491 |
| >gnl|CDD|215279 PLN02503, PLN02503, fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Score = 133 bits (335), Expect = 3e-32
Identities = 83/279 (29%), Positives = 142/279 (50%), Gaps = 37/279 (13%)
Query: 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLA-EFSKL 270
+A + G++ L+TG TGF+ KVL+EK+LR+ PD+GK+Y+L +AK RL E
Sbjct: 113 IAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDA 172
Query: 271 PVFERLRKECPAQ-----LSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKL 325
+F+ L++ LS+L + G++ ++NLG++ + +EV V+ N AA+
Sbjct: 173 ELFKCLQETHGKSYQSFMLSKLVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTF 232
Query: 326 EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPD-QKVLEEK---------- 374
+ + NTRG L+ A K KKL F+ STA+ + Q + EK
Sbjct: 233 DERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVNGQRQGRIMEKPFRMGDCIAR 292
Query: 375 -LYPSPVSPH-----DIMRAMEWMDD------------ETIKQLTPKILGPH--PNSYTF 414
L S PH DI ++ D + +K L + + ++Y F
Sbjct: 293 ELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYVF 352
Query: 415 TKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVD 453
TK + E +++ + +PVVI+RPS++ ++++P PGW++
Sbjct: 353 TKAMGEMVINSMRGDIPVVIIRPSVIESTWKDPFPGWME 391
|
Length = 605 |
| >gnl|CDD|176924 cd09071, FAR_C, C-terminal domain of fatty acyl CoA reductases | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-28
Identities = 35/92 (38%), Positives = 55/92 (59%)
Query: 537 FTQILPAYLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLLALHDNIS 596
F +LPAYL+D ++ L+ +K L+++ +I + LLEYFTT W F N AL + +S
Sbjct: 1 FLHLLPAYLLDLLLRLLGRKPRLLKLYRKIHKLLDLLEYFTTNEWRFDNDNTRALWERLS 60
Query: 597 EKDKQTFYIANIDVNIDDYLKTIILGARQYCL 628
E+D++ F ++ DDY + I G R+Y L
Sbjct: 61 EEDRELFNFDIRSIDWDDYFENYIPGLRKYLL 92
|
C-terminal domain of fatty acyl CoA reductases, a family of SDR-like proteins. SDRs or short-chain dehydrogenases/reductases are Rossmann-fold NAD(P)H-binding proteins. Many proteins in this FAR_C family may function as fatty acyl-CoA reductases (FARs), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as the biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. The function of this C-terminal domain is unclear. Length = 92 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-24
Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 46/223 (20%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
V VTGGTGF+G+ L+++LL + KV +L R++ R+ E
Sbjct: 1 VFVTGGTGFLGRHLVKRLL---ENGFKVLVLVRSESLGEAHERIEEAGLEA--------- 48
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGT 340
R+ ++EGD+ Q NLG+ + L +V V + AAS +A ++ N GT
Sbjct: 49 ----DRVRVLEGDLTQPNLGLSAAASRELAGKVDHVIHCAASYDFQAPNEDAWRTNIDGT 104
Query: 341 QRLLDIA--LKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIK 398
+ +L++A L +++ F + STA+ + +R E +
Sbjct: 105 EHVLELAARLDIQR---FHYVSTAYV--------------AGNREGNIR--ETELNPGQN 145
Query: 399 QLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVL 441
N Y +K E LV T++P+ + RPSIV+
Sbjct: 146 F---------KNPYEQSKAEAEQLVRAAATQIPLTVYRPSIVV 179
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|111859 pfam03015, Sterile, Male sterility protein | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 3e-22
Identities = 33/90 (36%), Positives = 52/90 (57%)
Query: 541 LPAYLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLLALHDNISEKDK 600
LPAY +D ++ L QK LV++ +I G+ +L+ F+ W F NK L + +SE+DK
Sbjct: 5 LPAYFLDLLLRLYGQKPRLVKLYRKIHKGLEVLQPFSLNEWIFDNKNTRELREKMSEEDK 64
Query: 601 QTFYIANIDVNIDDYLKTIILGARQYCLKE 630
+ F ++ D+Y + I G R+Y LKE
Sbjct: 65 KLFNFDMESLDWDEYFRNAIRGIRKYLLKE 94
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 94 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 8e-21
Identities = 72/227 (31%), Positives = 103/227 (45%), Gaps = 32/227 (14%)
Query: 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKE 279
+VL+TG TGF+G LL +LL+ ++ K+Y L RAK RL + K L E
Sbjct: 1 TVLLTGATGFLGAYLLRELLK-RKNVSKIYCLVRAKDEEAALERLIDNLKE-YGLNLWDE 58
Query: 280 CPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKL---EAELKENVAAN 336
+LSR+ ++ GD+ + NLG+ D D L EEV V+ + A++ ELK AN
Sbjct: 59 --LELSRIKVVVGDLSKPNLGLSDDDYQELAEEVDVIIHNGANVNWVYPYEELK---PAN 113
Query: 337 TRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDET 396
GT+ LL +A KL ST V + Y + DDE
Sbjct: 114 VLGTKELLKLAA-TGKLKPLHFVSTLS------VFSAEEYNAL-------------DDEE 153
Query: 397 IKQLTPKILGPHPNSYTFTKRLTETLVDEYKTK-LPVVIVRPSIVLP 442
+ G PN Y +K + E L+ E + LPV I+RP +
Sbjct: 154 SDDMLESQNG-LPNGYIQSKWVAEKLLREAANRGLPVAIIRPGNIFG 199
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 5e-17
Identities = 64/231 (27%), Positives = 95/231 (41%), Gaps = 45/231 (19%)
Query: 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKE 279
+VL+TG TGF+G LLE+LLR KV L RA + + + ERLR+
Sbjct: 1 TVLLTGATGFLGAYLLEELLRRSTQA-KVICLVRAA---SEEHAM---------ERLREA 47
Query: 280 CPAQL--------SRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKE 331
+ R+ ++ GD+ + LG+ D++ L E V + + A + E
Sbjct: 48 LRSYRLWHEDLARERIEVVAGDLSEPRLGLSDAEWERLAENVDTIVHNGALVNWVYPYSE 107
Query: 332 NVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEW 391
AN GT+ +L +A + + ST S + D+ E
Sbjct: 108 LRGANVLGTREVLRLAA-SGRAKPLHYVSTI---------------SVGAAIDLSTVTE- 150
Query: 392 MDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY-KTKLPVVIVRPSIVL 441
DD T +TP Y +K + E LV E LPV IVRP +L
Sbjct: 151 -DDAT---VTPPP--GLAGGYAQSKWVAELLVREASDRGLPVTIVRPGRIL 195
|
This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP|466833 from M. leprae, GP|435954 from Anabaena and OMNI|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. Length = 367 |
| >gnl|CDD|176924 cd09071, FAR_C, C-terminal domain of fatty acyl CoA reductases | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 1e-15
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 1 MHLLEYFTTRNWDFKNKRLLALHDNISEKDKQTFYIANIDVNIDDYLKTIILGARQYCL 59
+ LLEYFTT W F N AL + +SE+D++ F ++ DDY + I G R+Y L
Sbjct: 34 LDLLEYFTTNEWRFDNDNTRALWERLSEEDRELFNFDIRSIDWDDYFENYIPGLRKYLL 92
|
C-terminal domain of fatty acyl CoA reductases, a family of SDR-like proteins. SDRs or short-chain dehydrogenases/reductases are Rossmann-fold NAD(P)H-binding proteins. Many proteins in this FAR_C family may function as fatty acyl-CoA reductases (FARs), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as the biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. The function of this C-terminal domain is unclear. Length = 92 |
| >gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 9e-14
Identities = 58/234 (24%), Positives = 89/234 (38%), Gaps = 47/234 (20%)
Query: 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRK 278
R+VL+TG TGF+G LL +LL KV L RA+ S RL K
Sbjct: 1 RNVLLTGATGFLGAYLLLELLDRSD--AKVICLVRAQ------------SDEAALARLEK 46
Query: 279 ECPAQL-------SRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA---SLKLEAE 328
R+ ++ GD+ + +LG+ + L E V ++ + AA + +E
Sbjct: 47 TFDLYRHWDELSADRVEVVAGDLAEPDLGLSERTWQELAENVDLIIHNAALVNHVFPYSE 106
Query: 329 LKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRA 388
L+ AN GT +L +A K + S+ V E + Y +
Sbjct: 107 LRG---ANVLGTAEVLRLAA-TGKPKPLHYVSSI------SVGETEYY------SNFTVD 150
Query: 389 MEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDE-YKTKLPVVIVRPSIVL 441
+ + T + Y +K + E LV E LPV I RP +
Sbjct: 151 FDEISP------TRNVGQGLAGGYGRSKWVAEKLVREAGDRGLPVTIFRPGYIT 198
|
Length = 382 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 2e-13
Identities = 60/222 (27%), Positives = 95/222 (42%), Gaps = 48/222 (21%)
Query: 222 LVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECP 281
VTGGTGF+G+ L+ +LL + V++L R L E L
Sbjct: 4 FVTGGTGFIGRRLVSRLLDRRRE-ATVHVLVRR-------------QSLSRLEALAAYWG 49
Query: 282 AQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQ 341
A R+ + GD+ + LG+ ++D+ L ++ V + AA L A+ + AAN GT+
Sbjct: 50 AD--RVVPLVGDLTEPGLGLSEADIAELG-DIDHVVHLAAIYDLTADEEAQRAANVDGTR 106
Query: 342 RLLDIALKMKKLVA--FIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQ 399
++++A ++L A F H S+ + Y E DE +
Sbjct: 107 NVVELA---ERLQAATFHHVSS--------IAVAGDYEGVFR--------EDDFDEG-QG 146
Query: 400 LTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVL 441
L P P Y TK E LV E + LP + RP++V+
Sbjct: 147 L------PTP--YHRTKFEAEKLVRE-ECGLPWRVYRPAVVV 179
|
Length = 657 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 8e-12
Identities = 73/267 (27%), Positives = 99/267 (37%), Gaps = 83/267 (31%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIG-KVYILCRAKRGLTPKARLAEFSKLPVFERLRKE 279
+LVTG TGF+G L+ LL G +V L R + LPV
Sbjct: 1 ILVTGATGFLGSNLVRALLAQ----GYRVRALVR------SGSDAVLLDGLPV------- 43
Query: 280 CPAQLSRLHIIEGDILQANLGIKDSDLLMLQ-EEVSVVFNGAA----SLKLEAELKE-NV 333
++EGD+ D+ L + VF+ AA K EL NV
Sbjct: 44 --------EVVEGDLT-------DAASLAAAMKGCDRVFHLAAFTSLWAKDRKELYRTNV 88
Query: 334 AANTRGTQRLLDIALK--MKKLVAFIHFSTAFC---HPDQKVLEEKLYPSPVSPHDIMRA 388
GT+ +LD AL+ ++++V H S+ PD ++
Sbjct: 89 E----GTRNVLDAALEAGVRRVV---HTSSIAALGGPPDGRI------------------ 123
Query: 389 MEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTK-LPVVIVRPSIVL-PSFQE 446
DET TP P PN Y +K L E V E + L VVIV PS V P +
Sbjct: 124 -----DET----TPWNERPFPNDYYRSKLLAELEVLEAAAEGLDVVIVNPSAVFGPGDEG 174
Query: 447 PVPGW---VDSLNGPVGVLVASGKGVV 470
P +D LNG + G V
Sbjct: 175 PTSTGLDVLDYLNGKLPAYPPGGTSFV 201
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 2e-11
Identities = 69/308 (22%), Positives = 104/308 (33%), Gaps = 88/308 (28%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+LVTGG GF+G L+E+LL + D V L R + GL
Sbjct: 3 ILVTGGAGFIGSHLVERLLAAGHD---VRGLDRLRDGL---------------------- 37
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA----SLKLEAELKENVAAN 336
LS + + D+ D + + V + AA ++ E + N
Sbjct: 38 DPLLSGVEFVVLDLTDR-----DLVDELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVN 92
Query: 337 TRGTQRLLDIALKMKKLVAFIHFSTAFC----HPDQKVLEEKLYPSPVSPHDIMRAMEWM 392
GT LL+ A F+ S+ P + E+ P P++P
Sbjct: 93 VDGTLNLLEAARAAGV-KRFVFASSVSVVYGDPPPLPIDEDLGPPRPLNP---------- 141
Query: 393 DDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY--KTKLPVVIVRPSIVL-PSFQEPVP 449
Y +K E L+ Y LPVVI+RP V P + +
Sbjct: 142 -------------------YGVSKLAAEQLLRAYARLYGLPVVILRPFNVYGPGDKPDLS 182
Query: 450 GWV-----DSLNGPVGVLVASGKG-----------VVRSMILNDLSTETQVFNISSNEVE 493
V L ++V G G V +++L + + VFNI S E
Sbjct: 183 SGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENPDGGVFNIGSGTAE 242
Query: 494 AITWGEII 501
IT E+
Sbjct: 243 -ITVRELA 249
|
Length = 314 |
| >gnl|CDD|111859 pfam03015, Sterile, Male sterility protein | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 4e-10
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 1 MHLLEYFTTRNWDFKNKRLLALHDNISEKDKQTFYIANIDVNIDDYLKTIILGARQYCLK 60
+ +L+ F+ W F NK L + +SE+DK+ F ++ D+Y + I G R+Y LK
Sbjct: 34 LEVLQPFSLNEWIFDNKNTRELREKMSEEDKKLFNFDMESLDWDEYFRNAIRGIRKYLLK 93
Query: 61 E 61
E
Sbjct: 94 E 94
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 94 |
| >gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 7e-09
Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 21/111 (18%)
Query: 219 RSVLVTGGTGFMGKVLLEKLL-RSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLR 277
+V +TG TGF+G +L LL R KV+ RAK S+ ERLR
Sbjct: 972 ITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAK------------SEEAGLERLR 1019
Query: 278 KECPAQ-------LSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVF-NGA 320
K SR+ ++ GD+ + G+ D L EV V+ NGA
Sbjct: 1020 KTGTTYGIWDEEWASRIEVVLGDLSKEKFGLSDEKWSDLTNEVDVIIHNGA 1070
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 63/257 (24%), Positives = 90/257 (35%), Gaps = 60/257 (23%)
Query: 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKE 279
SVLVTGG+GF G+ L+++LL + G Y+ R F P E L
Sbjct: 1 SVLVTGGSGFFGERLVKQLL----ERGGTYV------------RS--FDIAPPGEALSAW 42
Query: 280 CPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRG 339
+ ++GDI N D+ VF+ AA + L N G
Sbjct: 43 QHPNIE---FLKGDITDRN------DVEQALSGADCVFHTAAIVPLAGPRDLYWEVNVGG 93
Query: 340 TQRLLDI--ALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETI 397
TQ +LD ++K V S F Q +I DET
Sbjct: 94 TQNVLDACQRCGVQKFVYTSSSSVIF--GGQ---------------NIHNG-----DET- 130
Query: 398 KQLTPKILGPHPNSYTFTKRLTETLVDEYKTK--LPVVIVRPSIVL-PSFQEPVPGWVDS 454
P + Y TK + E +V E + L +RP+ + P Q VP +
Sbjct: 131 ---LPY-PPLDSDMYAETKAIAEIIVLEANGRDDLLTCALRPAGIFGPGDQGLVPILFEW 186
Query: 455 -LNGPVGVLVASGKGVV 470
G V + G +V
Sbjct: 187 AEKGLVKFVFGRGNNLV 203
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 40/183 (21%), Positives = 70/183 (38%), Gaps = 46/183 (25%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+LVTGGTGF+G L+ +LL+ ++ + R R+
Sbjct: 1 ILVTGGTGFIGSHLVRRLLQEGYEVIVLG-------------------------RRRRSE 35
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKENVA 334
R+ EGD+ + + L+ + + V + AA S + A+ +
Sbjct: 36 SLNTGRIRFHEGDLTDPDALER----LLAEVQPDAVIHLAAQSGVGASFEDPADF---IR 88
Query: 335 ANTRGTQRLLDIALKMKKLVAFIHFSTA----FCHPDQKVLEEKLYPSPVSPHDIM-RAM 389
AN GT RLL+ A + + F+ S++ + E P+SP+ A
Sbjct: 89 ANVLGTLRLLE-AARRAGVKRFVFASSSEVYGDVADPP--ITEDTPLGPLSPYAAAKLAA 145
Query: 390 EWM 392
E +
Sbjct: 146 ERL 148
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 38/174 (21%), Positives = 55/174 (31%), Gaps = 51/174 (29%)
Query: 336 NTRGTQRLLDIALKMKKLVAFIHFSTA--FCHPDQKVLEEKLYPSPVSPHDIMRAMEWMD 393
N GT LL+ A K F++ S+A + P+ EE+ P P+SP
Sbjct: 57 NVVGTLNLLEAARKAGV-KRFVYASSASVYGSPEGLPEEEETPPRPLSP----------- 104
Query: 394 DETIKQLTPKILGPHPNSYTFTKRLTETLVDEY--KTKLPVVIVRPSIVL-----PSFQE 446
Y +K E L+ Y LPVVI+R + V P
Sbjct: 105 ------------------YGVSKLAAEHLLRSYGESYGLPVVILRLANVYGPGQRPRLDG 146
Query: 447 PVPGWVDSLNGPVGVLVASGKGVVRS------------MILNDLSTETQVFNIS 488
V ++ + V G R L + V+NI
Sbjct: 147 VVNDFIRRALEGKPLTVFGGGNQTRDFIHVDDVVRAILHALENPLEGGGVYNIG 200
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 60/260 (23%), Positives = 103/260 (39%), Gaps = 83/260 (31%)
Query: 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERL 276
G+++LVTGG G +G L+ ++L+ K+ + R + L L
Sbjct: 1 KGKTILVTGGAGSIGSELVRQILKF--GPKKLIVFDRDENKL---------------HEL 43
Query: 277 RKECPAQ--LSRLHIIEGDILQANLGIKDSDLL---MLQEEVSVVFNGAASLK----LEA 327
+E ++ +L I GD ++D + L + +VF+ AA+LK +E
Sbjct: 44 VRELRSRFPHDKLRFIIGD-------VRDKERLRRAFKERGPDIVFH-AAALKHVPSMED 95
Query: 328 ELKENVAANTRGTQRLLDIALKMKKLVA-FIHFSTAFCHPDQKVLEEKLYPSPVSPHDIM 386
+E + N GT+ ++D A++ V F+ ST D+ V +PV+ +M
Sbjct: 96 NPEEAIKTNVLGTKNVIDAAIENG--VEKFVCIST-----DKAV-------NPVN---VM 138
Query: 387 RAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLV---DEYKTKLPVVIVRPSIVLPS 443
A TKR+ E L+ +EY + VR VL S
Sbjct: 139 GA--------------------------TKRVAEKLLLAKNEYSSSTKFSTVRFGNVLGS 172
Query: 444 FQEPVPGWVDSL--NGPVGV 461
+P + + GP+ V
Sbjct: 173 RGSVLPLFKKQIKKGGPLTV 192
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 56/229 (24%), Positives = 86/229 (37%), Gaps = 58/229 (25%)
Query: 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRK 278
+LVTGG GF+G + +L PD +++ K LT L + +
Sbjct: 1 MKILVTGGAGFIGSNFVRYILNKHPD---DHVVNLDK--LTYAGNLENLADV-------- 47
Query: 279 ECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKEN 332
R ++GDI L D L + + V + AA S+ A +
Sbjct: 48 ---EDSPRYRFVQGDICDREL----VDRLFKEYQPDAVVHFAAESHVDRSIDGPAPFIQT 100
Query: 333 VAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWM 392
N GT LL+ A K F H ST +++Y +
Sbjct: 101 ---NVVGTYTLLEAARKYWGKFRFHHIST-----------DEVYGD-----------LGL 135
Query: 393 DDETIKQLTPKILGPHPNS-YTFTKRLTETLVDEY-KT-KLPVVIVRPS 438
DD+ + TP +P+S Y+ +K ++ LV Y +T LP I R S
Sbjct: 136 DDDAFTETTPY----NPSSPYSASKAASDLLVRAYVRTYGLPATITRCS 180
|
Length = 340 |
| >gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 53/225 (23%), Positives = 80/225 (35%), Gaps = 53/225 (23%)
Query: 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKE 279
+LVTGG GF+G + +L PD +V +L LT L + L
Sbjct: 1 RILVTGGAGFIGSNFVRYILNEHPDA-EVIVL----DKLTYAGNLENLADL--------- 46
Query: 280 CPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVA---AN 336
R ++GDI L L + + V + AA ++ + A N
Sbjct: 47 --EDNPRYRFVKGDIGDREL----VSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETN 100
Query: 337 TRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDET 396
GT LL+ K F H ST + D + +
Sbjct: 101 VVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLE-----------------------KGDA 137
Query: 397 IKQLTPKILGPHPNS-YTFTKRLTETLVDEY-KT-KLPVVIVRPS 438
+ TP P+S Y+ +K ++ LV Y +T LP +I R S
Sbjct: 138 FTETTPL----APSSPYSASKAASDHLVRAYHRTYGLPALITRCS 178
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 25/129 (19%)
Query: 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKAR-LAEFSKLPVFERLRK 278
LVTGG GF+G+ ++ LL ++ ++ +L +A P+ E S+
Sbjct: 1 VCLVTGGGGFLGQHIIRLLLERKEELKEIRVLDKA---FGPELIEHFEKSQGKT------ 51
Query: 279 ECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLE--AELKENVAAN 336
+ IEGDI S L + VSVV + AA + + +E N
Sbjct: 52 -------YVTDIEGDIKDL------SFLFRACQGVSVVIHTAAIVDVFGPPNYEELEEVN 98
Query: 337 TRGTQRLLD 345
GTQ +L+
Sbjct: 99 VNGTQAVLE 107
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 4e-05
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
VLVTGG GF+G L+E+LL ++ + L K+ P+ +
Sbjct: 2 VLVTGGAGFIGSHLVERLLERGHEVIVLDNLSTGKKENLPEVK----------------- 44
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLL-MLQEEVSVVFNGAASLKLEAELKENVA---AN 336
+ IEGD I+D +L+ E V VF+ AA + +++ + N
Sbjct: 45 ----PNVKFIEGD-------IRDDELVEFAFEGVDYVFHQAAQASVPRSIEDPIKDHEVN 93
Query: 337 TRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVL--EEKLYPSPVSP 382
GT LL+ A + + F++ S++ + D L +E P+P+SP
Sbjct: 94 VLGTLNLLE-AARKAGVKRFVYASSSSVYGDPPYLPKDEDHPPNPLSP 140
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 65/307 (21%), Positives = 105/307 (34%), Gaps = 98/307 (31%)
Query: 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRK 278
+L+ GGT F+GK L+E+LL + D V + R + K + E +
Sbjct: 1 MKILIIGGTRFIGKALVEELLAAGHD---VTVFNRGRT------------KPDLPEGVE- 44
Query: 279 ECPAQLSRLHIIEGDI-----LQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENV 333
HI+ GD L+ LG +D D VV + +
Sbjct: 45 ---------HIV-GDRNDRDALEELLGGEDFD---------VVV-------------DTI 72
Query: 334 AANTRGTQRLLDIALKMKKLVAFIHFSTA--FCHPDQKVLEEKLYPSPVSPHDIMRAMEW 391
A R +R LD K + + +I S+A + P + + E +P
Sbjct: 73 AYTPRQVERALDA-FKGR-VKQYIFISSASVYLKPGRVITES-------TPLR------- 116
Query: 392 MDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEP--VP 449
+ + + P G KR E ++ E P IVRP + +
Sbjct: 117 -EPDAVGLSDPWDYGRG-------KRAAEDVLIEA-AAFPYTIVRPPYIYGPGDYTGRLA 167
Query: 450 GWVDSL--NGPVGVLVASG--------KGVVR---SMILNDLSTETQVFNISSNEVEAIT 496
+ D L P+ V K + R N +FNI+ + EA+T
Sbjct: 168 YFFDRLARGRPILVPGDGHSLVQFIHVKDLARALLGAAGNPK-AIGGIFNITGD--EAVT 224
Query: 497 WGEIISR 503
W E++
Sbjct: 225 WDELLEA 231
|
Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 5e-05
Identities = 64/237 (27%), Positives = 91/237 (38%), Gaps = 58/237 (24%)
Query: 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRK 278
+LVTGG GF+G + LL PD I+ K LT L +
Sbjct: 1 MKILVTGGAGFIGSNFVRYLLNKYPD---YKIINLDK--LTYAGNLENLEDV-------- 47
Query: 279 ECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKEN 332
+ R ++GDI A L D L +E++ V + AA S+
Sbjct: 48 ---SSSPRYRFVKGDICDAEL----VDRLFEEEKIDAVIHFAAESHVDRSISDPEPFIRT 100
Query: 333 VAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWM 392
N GT LL+ A K + F+H ST D+ +Y + E+
Sbjct: 101 ---NVLGTYTLLEAARK-YGVKRFVHIST-----DE------VYGDLLDDG------EF- 138
Query: 393 DDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY-KT-KLPVVIVRPSIVLPSFQEP 447
ET +P L P + Y+ +K + LV Y +T LPVVI R S +Q P
Sbjct: 139 -TET----SP--LAPT-SPYSASKAAADLLVRAYHRTYGLPVVITRCSNNYGPYQFP 187
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 5e-05
Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 32/144 (22%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
VLVTGG G +G L ++L+ + K+ + R EF + + LR+E
Sbjct: 1 VLVTGGGGSIGSELCRQILKF--NPKKIILFSR-----------DEFKLYEIRQELRQEY 47
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLL---MLQEEVSVVFNGAASLK----LEAELKENV 333
R I GD ++D + L M Q V VF+ AA+LK +E E +
Sbjct: 48 NDPKLRFFI--GD-------VRDRERLERAMEQHGVDTVFH-AAALKHVPLVEYNPMEAI 97
Query: 334 AANTRGTQRLLDIALKM--KKLVA 355
N GT+ + + A++ +K V
Sbjct: 98 KTNVLGTENVAEAAIENGVEKFVL 121
|
This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 6e-05
Identities = 44/222 (19%), Positives = 76/222 (34%), Gaps = 70/222 (31%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+L+ G TGF+G+ L +LL +V +L R + RL++ + PV
Sbjct: 1 ILILGATGFIGRALARELLE---QGHEVTLLVRNTK------RLSKEDQEPV-------- 43
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGT 340
++EGD+ + +Q V+ A + ++ + GT
Sbjct: 44 -------AVVEGDLRDLDSLSDA-----VQGVDVVIHLAGAPR----DTRDFCEVDVEGT 87
Query: 341 QRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQL 400
+ +L+ A K + FI S+ Y +
Sbjct: 88 RNVLE-AAKEAGVKHFIFISSLG-----------AYGDLHEETE---------------- 119
Query: 401 TPKILGPHPNSYTF-TKRLTETLVDEYKTKLPVVIVRPSIVL 441
P P+S K TE ++ E LP IVRP ++
Sbjct: 120 ------PSPSSPYLAVKAKTEAVLREA--SLPYTIVRPGVIY 153
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 49/232 (21%), Positives = 79/232 (34%), Gaps = 73/232 (31%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+LVTG G +G++L +L S P + V L R + +P E+ +L + R
Sbjct: 1 ILVTGAAGGLGRLLARRLAAS-PRVIGVDGLDRRRPPGSPPK--VEYVRLDI----RDPA 53
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASL---KLEAELKENVAANT 337
A + R E V + A L + AE N
Sbjct: 54 AADVFRER-----------------------EADAVVHLAFILDPPRDGAERHR---INV 87
Query: 338 RGTQRLLDIALK--MKKLVAFIHFSTAFC---HPDQKVLEEKLYPSPVSPHDIMRAMEWM 392
GTQ +LD + ++V S+ HPD + P SP
Sbjct: 88 DGTQNVLDACAAAGVPRVV---VTSSVAVYGAHPDNPAPLTEDAPLRGSPE--------- 135
Query: 393 DDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLP---VVIVRPSIVL 441
+Y+ K E L+ E++ + P V ++RP+ +L
Sbjct: 136 -----------------FAYSRDKAEVEQLLAEFRRRHPELNVTVLRPATIL 170
|
Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306 |
| >gnl|CDD|187628 cd05370, SDR_c2, classical (c) SDR, subgroup 2 | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 36/159 (22%), Positives = 56/159 (35%), Gaps = 35/159 (22%)
Query: 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERL 276
G +VL+TGGT +G L K L + G I+ G RLAE K +
Sbjct: 4 TGNTVLITGGTSGIGLALARKFL----EAGNTVIIT----GRRE-ERLAEAKKE-LPNIH 53
Query: 277 RKECPAQLSRLHIIEG------------DILQANLGIKDSDLLMLQEEVSVVFNGAASL- 323
+ +E DIL N GI ++ + A+ L
Sbjct: 54 TIVL--DVGDAESVEALAEALLSEYPNLDILINNAGI------QRPIDLR---DPASDLD 102
Query: 324 KLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTA 362
K + E+ N+ R + L LK + ++ S+
Sbjct: 103 KADTEIDTNLIGPIRLIKAFLPH-LKKQPEATIVNVSSG 140
|
Short-chain dehydrogenases/reductases (SDRs, aka Tyrosine-dependent oxidoreductases) are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 228 |
| >gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-04
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 30/149 (20%)
Query: 208 DMGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEF 267
D + G++VLVTGG G +G L ++L+ + ++ + R E+
Sbjct: 240 DTELIGAMLTGKTVLVTGGGGSIGSELCRQILKF--NPKEIILFSR-----------DEY 286
Query: 268 SKLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLL---MLQEEVSVVFNGAASLK 324
+ LR++ P +L GD ++D D + M +V +VF+ AA+LK
Sbjct: 287 KLYLIDMELREKFPE--LKLRFYIGD-------VRDRDRVERAMEGHKVDIVFH-AAALK 336
Query: 325 ----LEAELKENVAANTRGTQRLLDIALK 349
+E +E + N GT+ + + A+K
Sbjct: 337 HVPLVEYNPEEAIKTNVLGTENVAEAAIK 365
|
Length = 588 |
| >gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 57/234 (24%), Positives = 87/234 (37%), Gaps = 65/234 (27%)
Query: 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYIL-----CRAKRGLTPKARLAEFSKL 270
Y +++L+TG GF+ + +L+R+ PD K+ +L C + L P F
Sbjct: 4 YEPKNILITGAAGFIASHVANRLIRNYPDY-KIVVLDKLDYCSNLKNLNPSKSSPNFK-- 60
Query: 271 PVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLK 324
++GDI A+L + L++ E + + + AA S
Sbjct: 61 ------------------FVKGDIASADL----VNYLLITEGIDTIMHFAAQTHVDNSFG 98
Query: 325 LEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHD 384
E +N N GT LL+ ++ FIH ST +V E + V H+
Sbjct: 99 NSFEFTKN---NIYGTHVLLEACKVTGQIRRFIHVST------DEVYGETDEDADVGNHE 149
Query: 385 IMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTK--LPVVIVR 436
QL P N Y+ TK E LV Y LPV+ R
Sbjct: 150 ------------ASQLLPT------NPYSATKAGAEMLVMAYGRSYGLPVITTR 185
|
Length = 668 |
| >gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.001
Identities = 34/161 (21%), Positives = 52/161 (32%), Gaps = 46/161 (28%)
Query: 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRK 278
+VL+TGGTG +G L L + + +L ++RG P A L
Sbjct: 1 GTVLITGGTGGLGLALARWLAA---EGARHLVLV-SRRGPAPGA-----------AELVA 45
Query: 279 ECPAQLSRLHIIEGDI------------LQANLGIKDSDLLMLQEEVSVVFNGAASLKL- 325
E A + + + D+ L A LG + V + A L
Sbjct: 46 ELEALGAEVTVAACDVADRDALAALLAALPAALGP-----------LDGVVHNAGVLDDG 94
Query: 326 ------EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFS 360
+ +A G L + L AF+ FS
Sbjct: 95 PLEELTPERFERVLAPKVTGA-WNLHELTRDLDLGAFVLFS 134
|
This family contains a wide variety of dehydrogenases. Length = 167 |
| >gnl|CDD|187656 cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup 2, complex (x) SDRs | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 36/166 (21%), Positives = 55/166 (33%), Gaps = 39/166 (23%)
Query: 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLP 271
A G LVTGG G +G+ L L R ++ +L R L P+ K
Sbjct: 199 SAPLKPGGVYLVTGGAGGIGRALARALARRYG--ARLVLLGR--SPLPPEEE----WKAQ 250
Query: 272 VFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVS----------VVFNGAA 321
L A +R+ I D+ +D ++ + V + A
Sbjct: 251 TLAALE----ALGARVLYISADV---------TDAAAVRRLLEKVRERYGAIDGVIHAAG 297
Query: 322 SL-------KLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFS 360
L K + + +A G L AL + L F+ FS
Sbjct: 298 VLRDALLAQKTAEDFEAVLAPKVDGLLNLAQ-ALADEPLDFFVLFS 342
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes both KR domains of the Bacillus subtilis Pks J,-L, and PksM, and all three KR domains of PksN, components of the megacomplex bacillaene synthase, which synthesizes the antibiotic bacillaene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 436 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.004
Identities = 54/253 (21%), Positives = 89/253 (35%), Gaps = 46/253 (18%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
VLVTG +GF+ ++E+LL +RG +A + + SK+ +
Sbjct: 1 VLVTGASGFVASHVVEQLL---------------ERGYKVRATVRDPSKVKK-VNHLLDL 44
Query: 281 PAQLSRLHIIEGDI---LQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAE-LKENVAAN 336
A+ RL + D+ + IK VF+ A + ++ E +
Sbjct: 45 DAKPGRLELAVADLTDEQSFDEVIKGCAG---------VFHVATPVSFSSKDPNEVIKPA 95
Query: 337 TRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDET 396
GT L A K + F+ S+A K E + + W + E
Sbjct: 96 IGGTLNALKAAAAAKSVKRFVLTSSAGSVLIPKPNVEGIV---------LDEKSW-NLEE 145
Query: 397 IKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVL-PSFQEPVP---GWV 452
K + S T ++ DE + ++ V P++ + F P GW
Sbjct: 146 FDSDPKKSAWVYAASKTLAEKAAWKFADE--NNIDLITVIPTLTIGTIFDSETPSSSGWA 203
Query: 453 DSL-NGPVGVLVA 464
SL G GV A
Sbjct: 204 MSLITGNEGVSPA 216
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 851 | |||
| KOG1221|consensus | 467 | 100.0 | ||
| PLN02996 | 491 | fatty acyl-CoA reductase | 100.0 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 100.0 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 100.0 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 100.0 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 99.97 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 99.97 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.97 | |
| KOG0747|consensus | 331 | 99.96 | ||
| KOG1502|consensus | 327 | 99.96 | ||
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 99.96 | |
| KOG1430|consensus | 361 | 99.95 | ||
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.95 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 99.95 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 99.95 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.95 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 99.95 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 99.95 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 99.95 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 99.95 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 99.95 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 99.95 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 99.95 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 99.94 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.94 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.94 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 99.94 | |
| KOG1371|consensus | 343 | 99.94 | ||
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 99.94 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 99.94 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 99.94 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 99.94 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.94 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 99.94 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 99.93 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 99.93 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 99.93 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 99.93 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 99.93 | |
| PF03015 | 94 | Sterile: Male sterility protein; InterPro: IPR0042 | 99.93 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 99.92 | |
| KOG1429|consensus | 350 | 99.92 | ||
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 99.92 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.92 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 99.92 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 99.92 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 99.92 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 99.91 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 99.91 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.91 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 99.91 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 99.91 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 99.9 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.9 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 99.89 | |
| KOG2462|consensus | 279 | 99.89 | ||
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 99.88 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.87 | |
| cd09071 | 92 | FAR_C C-terminal domain of fatty acyl CoA reductas | 99.87 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.87 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.84 | |
| KOG2462|consensus | 279 | 99.84 | ||
| PLN00016 | 378 | RNA-binding protein; Provisional | 99.82 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.82 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 99.81 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.78 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.77 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.74 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 99.72 | |
| PF03015 | 94 | Sterile: Male sterility protein; InterPro: IPR0042 | 99.71 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.69 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.69 | |
| KOG1431|consensus | 315 | 99.68 | ||
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.68 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.68 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.67 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.67 | |
| KOG1221|consensus | 467 | 99.67 | ||
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.66 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.63 | |
| KOG1074|consensus | 958 | 99.63 | ||
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.62 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.62 | |
| KOG2865|consensus | 391 | 99.62 | ||
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.61 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.61 | |
| cd09071 | 92 | FAR_C C-terminal domain of fatty acyl CoA reductas | 99.61 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.61 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.61 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.6 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.59 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.59 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.59 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.58 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.58 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.58 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.58 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.58 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.58 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.57 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.57 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.57 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.57 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.56 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.56 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.55 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.55 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.55 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.54 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.53 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.53 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.53 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.53 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.53 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.53 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.53 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.52 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.52 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.52 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.52 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.52 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.52 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.52 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.52 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.52 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.52 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.51 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.51 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.51 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.51 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.5 | |
| KOG3576|consensus | 267 | 99.5 | ||
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.5 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.5 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.5 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.49 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.49 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.48 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.48 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.48 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.48 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.48 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.48 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.48 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.48 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.48 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.48 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.48 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.47 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.47 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.47 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.47 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.47 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.47 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.47 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.47 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.47 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.46 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.46 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.46 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.46 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.46 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.46 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.45 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.45 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.45 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.45 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.45 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.44 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.44 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.44 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.44 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.44 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.43 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.43 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.43 | |
| KOG1074|consensus | 958 | 99.43 | ||
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.43 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.42 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.42 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.42 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.42 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.42 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.42 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.42 | |
| KOG3608|consensus | 467 | 99.41 | ||
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.41 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.41 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.41 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.41 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.41 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.4 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.4 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.39 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.39 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.39 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.39 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.38 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.37 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.37 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.37 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.37 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.37 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.37 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.36 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.36 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.36 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.35 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.34 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.34 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.34 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.33 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.32 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.32 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.32 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.32 | |
| KOG1372|consensus | 376 | 99.31 | ||
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.3 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.29 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.29 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.29 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.29 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.28 | |
| KOG3623|consensus | 1007 | 99.28 | ||
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.26 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.26 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.26 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.25 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.25 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.24 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.24 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.23 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.22 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.21 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.2 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.2 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.19 | |
| KOG3623|consensus | 1007 | 99.19 | ||
| KOG3576|consensus | 267 | 99.19 | ||
| PLN02996 | 491 | fatty acyl-CoA reductase | 99.19 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.18 | |
| KOG1205|consensus | 282 | 99.18 | ||
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.17 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.17 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.17 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.14 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.13 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.13 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.12 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.12 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.12 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.11 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.11 | |
| KOG2774|consensus | 366 | 99.1 | ||
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.08 | |
| KOG3608|consensus | 467 | 99.08 | ||
| KOG4039|consensus | 238 | 99.06 | ||
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.05 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.03 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.01 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.99 | |
| PLN00015 | 308 | protochlorophyllide reductase | 98.98 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 98.98 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 98.95 | |
| KOG1201|consensus | 300 | 98.89 | ||
| KOG1203|consensus | 411 | 98.85 | ||
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 98.78 | |
| KOG1208|consensus | 314 | 98.78 | ||
| PLN03086 | 567 | PRLI-interacting factor K; Provisional | 98.76 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 98.76 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 98.75 | |
| KOG4288|consensus | 283 | 98.73 | ||
| KOG0725|consensus | 270 | 98.72 | ||
| PLN03086 | 567 | PRLI-interacting factor K; Provisional | 98.7 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 98.65 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 98.62 | |
| KOG4169|consensus | 261 | 98.62 | ||
| PLN00106 | 323 | malate dehydrogenase | 98.57 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 98.57 | |
| KOG1610|consensus | 322 | 98.57 | ||
| PHA00733 | 128 | hypothetical protein | 98.52 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 98.52 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 98.47 | |
| PF13465 | 26 | zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A | 98.45 | |
| PHA00733 | 128 | hypothetical protein | 98.41 | |
| KOG1611|consensus | 249 | 98.36 | ||
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 98.35 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.34 | |
| KOG1200|consensus | 256 | 98.34 | ||
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 98.33 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.33 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.32 | |
| KOG1207|consensus | 245 | 98.32 | ||
| PHA02768 | 55 | hypothetical protein; Provisional | 98.3 | |
| KOG1210|consensus | 331 | 98.3 | ||
| PHA02768 | 55 | hypothetical protein; Provisional | 98.26 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 98.21 | |
| PF13465 | 26 | zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A | 98.16 | |
| KOG1209|consensus | 289 | 98.15 | ||
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 98.13 | |
| KOG3019|consensus | 315 | 97.94 | ||
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 97.88 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.87 | |
| KOG1204|consensus | 253 | 97.86 | ||
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.62 | |
| PHA00616 | 44 | hypothetical protein | 97.61 | |
| KOG1014|consensus | 312 | 97.55 | ||
| PHA00616 | 44 | hypothetical protein | 97.51 | |
| KOG1478|consensus | 341 | 97.48 | ||
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.48 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.48 | |
| KOG1199|consensus | 260 | 97.44 | ||
| KOG3993|consensus | 500 | 97.42 | ||
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 97.31 | |
| PHA00732 | 79 | hypothetical protein | 97.28 | |
| PRK10124 | 463 | putative UDP-glucose lipid carrier transferase; Pr | 97.27 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 97.23 | |
| PHA00732 | 79 | hypothetical protein | 97.18 | |
| TIGR03025 | 445 | EPS_sugtrans exopolysaccharide biosynthesis polypr | 97.17 | |
| KOG3993|consensus | 500 | 97.17 | ||
| TIGR03023 | 451 | WcaJ_sugtrans Undecaprenyl-phosphate glucose phosp | 97.14 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.09 | |
| KOG2733|consensus | 423 | 97.09 | ||
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 97.01 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 96.93 | |
| PF13727 | 175 | CoA_binding_3: CoA-binding domain; PDB: 3NKL_B. | 96.82 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 96.79 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 96.75 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 96.66 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 96.59 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.58 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.54 | |
| TIGR03022 | 456 | WbaP_sugtrans Undecaprenyl-phosphate galactose pho | 96.5 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 96.49 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 96.48 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 96.38 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 96.24 | |
| COG5189 | 423 | SFP1 Putative transcriptional repressor regulating | 96.17 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 96.13 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 96.13 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.05 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 96.04 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 96.0 | |
| PF00096 | 23 | zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070 | 95.97 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 95.86 | |
| KOG3516|consensus | 1306 | 95.83 | ||
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 95.78 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 95.72 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 95.69 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 95.69 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 95.45 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.44 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 95.43 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 95.41 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 95.36 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 95.33 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 95.28 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 95.24 | |
| PF00096 | 23 | zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070 | 95.22 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 95.12 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 95.11 | |
| PF13912 | 27 | zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9 | 95.07 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 95.02 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 94.96 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 94.96 | |
| COG5048 | 467 | FOG: Zn-finger [General function prediction only] | 94.93 | |
| PF05605 | 54 | zf-Di19: Drought induced 19 protein (Di19), zinc-b | 94.86 | |
| PRK15204 | 476 | undecaprenyl-phosphate galactose phosphotransferas | 94.79 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 94.78 | |
| PF13912 | 27 | zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9 | 94.69 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 94.68 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 94.62 | |
| KOG1202|consensus | 2376 | 94.58 | ||
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 94.58 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 94.57 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 94.57 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 94.55 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 94.52 | |
| PF05605 | 54 | zf-Di19: Drought induced 19 protein (Di19), zinc-b | 94.44 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 94.43 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 94.4 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 94.35 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 94.31 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 94.15 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 94.12 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 93.91 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 93.77 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 93.76 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 93.74 | |
| PRK04860 | 160 | hypothetical protein; Provisional | 93.69 | |
| PRK07411 | 390 | hypothetical protein; Validated | 93.69 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 93.67 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.49 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 93.41 | |
| PF13894 | 24 | zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP | 93.4 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 93.36 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 93.32 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 93.26 | |
| TIGR03013 | 442 | EpsB_2 sugar transferase, PEP-CTERM system associa | 93.19 | |
| COG5189 | 423 | SFP1 Putative transcriptional repressor regulating | 93.13 | |
| PF09237 | 54 | GAGA: GAGA factor; InterPro: IPR015318 Zinc finger | 92.96 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 92.78 | |
| PF02670 | 129 | DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re | 92.67 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 92.63 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 92.47 | |
| PF09237 | 54 | GAGA: GAGA factor; InterPro: IPR015318 Zinc finger | 92.46 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 92.32 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 92.31 | |
| PF12756 | 100 | zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: | 92.17 | |
| PF13894 | 24 | zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP | 92.14 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 92.06 | |
| smart00355 | 26 | ZnF_C2H2 zinc finger. | 92.01 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 91.97 | |
| KOG4022|consensus | 236 | 91.81 | ||
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 91.77 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 91.64 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 91.58 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 91.47 | |
| PRK04860 | 160 | hypothetical protein; Provisional | 91.05 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 91.03 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 91.02 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 90.97 | |
| PLN02602 | 350 | lactate dehydrogenase | 90.58 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 90.56 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 90.44 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 90.19 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 90.14 | |
| COG5048 | 467 | FOG: Zn-finger [General function prediction only] | 90.12 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 89.98 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 89.95 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 89.89 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 89.84 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.83 | |
| PF12683 | 275 | DUF3798: Protein of unknown function (DUF3798); In | 89.75 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 89.66 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.63 | |
| smart00355 | 26 | ZnF_C2H2 zinc finger. | 89.42 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 89.19 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 89.17 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 89.08 | |
| PF12874 | 25 | zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG | 88.95 | |
| KOG2013|consensus | 603 | 88.42 | ||
| KOG1494|consensus | 345 | 88.4 | ||
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 88.38 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 87.84 | |
| PF12756 | 100 | zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: | 87.82 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 87.75 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 87.39 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 87.36 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 87.2 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 87.1 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 86.77 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 86.57 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 86.2 | |
| KOG0023|consensus | 360 | 85.39 | ||
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 85.21 | |
| PF13909 | 24 | zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W | 85.0 | |
| PF12171 | 27 | zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi | 84.89 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 84.71 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 84.56 | |
| KOG1178|consensus | 1032 | 84.38 | ||
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 84.36 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 84.18 | |
| KOG1496|consensus | 332 | 84.1 | ||
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 83.72 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 83.45 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 83.28 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 83.25 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 82.98 | |
| KOG2018|consensus | 430 | 82.74 | ||
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 82.67 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 82.37 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 82.32 | |
| KOG2231|consensus | 669 | 82.27 | ||
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 82.15 | |
| PF12874 | 25 | zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG | 81.75 |
| >KOG1221|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-90 Score=756.71 Aligned_cols=435 Identities=39% Similarity=0.724 Sum_probs=424.1
Q ss_pred cchhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEE
Q psy11859 210 GDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHI 289 (851)
Q Consensus 210 ~~i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~ 289 (851)
++|.+||+||+|||||||||+|+.|+|+||+..|+|++||+|+|++++.++.+|+.+....++|+.|++..|+..+|+.+
T Consensus 4 ~~i~~f~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~p 83 (467)
T KOG1221|consen 4 SDIVQFYKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVP 83 (467)
T ss_pred ccHHHHhCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceeccee
Confidence 45999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred EEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc
Q psy11859 290 IEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK 369 (851)
Q Consensus 290 v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~ 369 (851)
|.||+.+++||+|+.++..+.++||+|||+||+++|+++++.++.+|+.||++++++|+++.+++.|||+||||+++...
T Consensus 84 i~GDi~~~~LGis~~D~~~l~~eV~ivih~AAtvrFde~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~~ 163 (467)
T KOG1221|consen 84 IAGDISEPDLGISESDLRTLADEVNIVIHSAATVRFDEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCNVG 163 (467)
T ss_pred ccccccCcccCCChHHHHHHHhcCCEEEEeeeeeccchhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred ccccccCCCCC--CHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCC
Q psy11859 370 VLEEKLYPSPV--SPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEP 447 (851)
Q Consensus 370 ~i~E~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p 447 (851)
.++|..|+.+. ++++++++.++++++.++++++++.++|||||++||++||+++.+++.++|++|+||++|++++.+|
T Consensus 164 ~i~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~~~lPivIiRPsiI~st~~EP 243 (467)
T KOG1221|consen 164 HIEEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEAENLPLVIIRPSIITSTYKEP 243 (467)
T ss_pred cccccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhccCCCeEEEcCCceeccccCC
Confidence 99999999988 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHhhhhcCCceEEEEcccCceeEEEeecC-------------------------C--CCccEEEEeCCCCccccHHHH
Q psy11859 448 VPGWVDSLNGPVGVLVASGKGVVRSMILNDL-------------------------S--TETQVFNISSNEVEAITWGEI 500 (851)
Q Consensus 448 ~p~~i~~~~~~~~~~~~~g~~v~~~~~~~~~-------------------------~--~~~~iyni~~~~~~~~t~~el 500 (851)
+|||+++++|+.++++|.|+|+++.+.++++ . ....|||+++++.||++|+++
T Consensus 244 ~pGWidn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~~Np~t~~~~ 323 (467)
T KOG1221|consen 244 FPGWIDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSNDNPVTWGDF 323 (467)
T ss_pred CCCccccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccccCcccHHHH
Confidence 9999999999999999999999999999887 1 125699999999999999999
Q ss_pred HHHHHHHhhcCCCCCccccCcceeccchHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhccccccCe
Q psy11859 501 ISRGKQLIYQYPLEAGLWYPNGQIRSNRFWHYFFVIFTQILPAYLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRN 580 (851)
Q Consensus 501 ~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~lpa~~~d~~~~l~G~~p~l~~~~~ki~~~~~~~~~f~~~~ 580 (851)
.+...++....|+...+|+|.+..+++.+.|.+..+++|++||+++|+++++.|++|.+.+++++|++...+++||+.++
T Consensus 324 ~e~~~~~~~~~Pl~~~iw~P~~~~~sn~~~f~~~~~~~h~lPa~~~d~~~~i~g~k~~~~k~~~ki~~~~~~l~~f~~~~ 403 (467)
T KOG1221|consen 324 IELALRYFEKIPLEKMIWYPFGTLTSNPWLFNLAAFLYHTLPAYILDLLLRLLGKKPRLVKLYRKIHKLVKLLEPFSLFK 403 (467)
T ss_pred HHHHHHhcccCCcccceeccCceeeecHhHHHHHHHHHHHhhHHHHHHHHHHhCCChhhhHHHHHHHHHHHhhhhheece
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcChhHHHHHHhcCccCCCccccccccCCHHHHHHHHHHHHHHhhhCCCCCChHHHHHHHHH
Q psy11859 581 WDFKNKRLLALHDNISEKDKQTFYIANIDVNIDDYLKTIILGARQYCLKEPLTTLPKARRQIKF 644 (851)
Q Consensus 581 w~f~~~n~~~l~~~l~~~d~~~F~~d~~~i~W~~Y~~~~~~GirkyllKe~~~~l~~a~~~~~~ 644 (851)
|.|+++|+.+|+++|+++||++|+||++++||++|+.++++|+|+|++||+++++|+||+++++
T Consensus 404 w~Fd~~n~~~L~~~~~~~d~~~f~fd~~~ldW~ey~~~~i~G~r~~llKe~~e~l~~~r~~~kr 467 (467)
T KOG1221|consen 404 WIFDNKNTEKLREKMSEEDKRLFNFDMKQLDWEEYFNRHLLGLRKYLLKESPESLPQARKRLKR 467 (467)
T ss_pred EEecCccHHHHHHhCCHHHHhhcCCCcccCCHHHHHHHHHHHHHHHHhcCChhhhHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999998864
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-71 Score=640.84 Aligned_cols=420 Identities=25% Similarity=0.420 Sum_probs=365.8
Q ss_pred cchhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHH-HHhcChhhHHHhhhCcccC----
Q psy11859 210 GDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLA-EFSKLPVFERLRKECPAQL---- 284 (851)
Q Consensus 210 ~~i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~-~~~~~~~f~~l~~~~~~~~---- 284 (851)
++|.+||+||+|||||||||||++|+++||+.+|+|.+||+|+|++++.++.+|+. ++.+.++|+.+++..++..
T Consensus 3 ~~i~~~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~ 82 (491)
T PLN02996 3 GSCVQFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLI 82 (491)
T ss_pred ccHHHHhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhh
Confidence 57999999999999999999999999999999999999999999999999999986 7888999999988776543
Q ss_pred -CCeEEEEcCCCCCcCCCCHHH-HHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeee
Q psy11859 285 -SRLHIIEGDILQANLGIKDSD-LLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTA 362 (851)
Q Consensus 285 -~~v~~v~gDi~~~~lgls~~~-~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa 362 (851)
++++++.||+++++|||++.+ +..+++++|+|||+||.++++.++..++++||.||.+|+++|++++++++|||+||+
T Consensus 83 ~~kv~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~ 162 (491)
T PLN02996 83 SEKVTPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNFDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTA 162 (491)
T ss_pred hcCEEEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccCCcCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeee
Confidence 799999999999999999877 567888999999999999998889999999999999999999988679999999999
Q ss_pred eeeCCCc-ccccccCCCCC--------CHH--------HHHHHHhh-ccHHHHhh------hCCcccCCCCchhhHHHHH
Q psy11859 363 FCHPDQK-VLEEKLYPSPV--------SPH--------DIMRAMEW-MDDETIKQ------LTPKILGPHPNSYTFTKRL 418 (851)
Q Consensus 363 ~~~~~~~-~i~E~~~~~p~--------~~~--------~~~~~~~~-~~~~~~~~------~~~~~~~~~~n~Y~~SK~~ 418 (851)
++||... .++|..++.+. +++ ++.++.++ ++++.++. +++....+|||+|++||++
T Consensus 163 ~vyG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~ 242 (491)
T PLN02996 163 YVCGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAM 242 (491)
T ss_pred EEecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHH
Confidence 9998765 67787776544 343 23444444 67766663 6777789999999999999
Q ss_pred HHHHHHHHhCCCCEEEEecccccCCCCCCchhHhhhhcCCce-----------EEEEcccC---------ceeEEEeecC
Q psy11859 419 TETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDSLNGPVG-----------VLVASGKG---------VVRSMILNDL 478 (851)
Q Consensus 419 aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~i~~~~~~~~-----------~~~~~g~~---------v~~~~~~~~~ 478 (851)
||+++.++..++|++|+||++|+||+++|+|+|++++++..+ .++++|.. ++++++.+..
T Consensus 243 aE~lv~~~~~~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg~~~~D~v~Vddvv~a~l~a~~ 322 (491)
T PLN02996 243 GEMLLGNFKENLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADMVVNAMIVAMA 322 (491)
T ss_pred HHHHHHHhcCCCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEecCCCeecceecccHHHHHHHHHHH
Confidence 999999988899999999999999999999999988644322 23343422 2222222211
Q ss_pred C-----CCccEEEEeCCCCccccHHHHHHHHHHHhhcCCCC----CccccCcceeccchHHHHHHHHHHHHHHHHHHHHH
Q psy11859 479 S-----TETQVFNISSNEVEAITWGEIISRGKQLIYQYPLE----AGLWYPNGQIRSNRFWHYFFVIFTQILPAYLVDFI 549 (851)
Q Consensus 479 ~-----~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~p~~----~~~~~p~~~~~~~~~~~~~~~~~~~~lpa~~~d~~ 549 (851)
. ..++|||+++|..+|+||.|+++.+.++++..|+. .++|+|.+.++++.+.|.++.+++|.+|++++|++
T Consensus 323 ~~~~~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~lp~~~~~~~ 402 (491)
T PLN02996 323 AHAGGQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNPWINKEGSPVKVGKGTILSTMASFSLYMTIRYLLPLKALQLV 402 (491)
T ss_pred HhhccCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhCCCcCCCCCeEeeCCceecCcHHHHHHHHHHHHHhHHHHHHHH
Confidence 1 23679999999778999999999999999999998 59999999999999999999999999999999998
Q ss_pred HH--HcCCChHHHHHHHHH---HHHHHhccccccCeEEEcChhHHHHHHhcCccC---CCccccccccCCHHHHHHH-HH
Q psy11859 550 MV--LIRQKTFLVRVQNRI---WLGMHLLEYFTTRNWDFKNKRLLALHDNISEKD---KQTFYIANIDVNIDDYLKT-II 620 (851)
Q Consensus 550 ~~--l~G~~p~l~~~~~ki---~~~~~~~~~f~~~~w~f~~~n~~~l~~~l~~~d---~~~F~~d~~~i~W~~Y~~~-~~ 620 (851)
.. +.|++|++.++++|+ +++.++++||++++|.|+++|+++|++.|+++| |++|+||++.+||++||.+ |+
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~w~f~~~n~~~l~~~~~~~d~~d~~~f~~d~~~~~w~~y~~~~~~ 482 (491)
T PLN02996 403 NIILPKRYGDKYTDLNRKIKLVMRLVDLYKPYVFFKGIFDDTNTEKLRIKRKETGKEEADMFDFDPKSIDWEDYMTNVHI 482 (491)
T ss_pred HHHhhhccChHHHHHHHHHHHHHHHHHHhhccccceEEEccHHHHHHHHHCCccccccccEeccCcccCCHHHHHHHhhH
Confidence 88 667999999999999 667999999999999999999999999999955 9999999999999999999 99
Q ss_pred HHHHHhhhC
Q psy11859 621 LGARQYCLK 629 (851)
Q Consensus 621 ~GirkyllK 629 (851)
+|+|+|++|
T Consensus 483 ~g~~~y~~k 491 (491)
T PLN02996 483 PGLVKYVLK 491 (491)
T ss_pred HHHHHHhcC
Confidence 999999987
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-71 Score=640.25 Aligned_cols=417 Identities=25% Similarity=0.404 Sum_probs=370.8
Q ss_pred cchhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHH-HHhcChhhHHHhhhCccc-----
Q psy11859 210 GDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLA-EFSKLPVFERLRKECPAQ----- 283 (851)
Q Consensus 210 ~~i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~-~~~~~~~f~~l~~~~~~~----- 283 (851)
..|.+||+||+|||||||||||++|+++||+.+|+|.+||+|+|++++..+.+|+. ++++.++|+.|++..+..
T Consensus 111 ~~I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~ 190 (605)
T PLN02503 111 IGIAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFM 190 (605)
T ss_pred cchhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccc
Confidence 46999999999999999999999999999999999999999999999999999995 788999999999887753
Q ss_pred CCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeee
Q psy11859 284 LSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAF 363 (851)
Q Consensus 284 ~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~ 363 (851)
..|++++.||+++++|||++++++.+.+++|+|||+||.++++.+++.++++||.||.+|+++|++++++++|||+||+|
T Consensus 191 ~~Ki~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTay 270 (605)
T PLN02503 191 LSKLVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAY 270 (605)
T ss_pred cccEEEEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCce
Confidence 57999999999999999999999999999999999999999999999999999999999999999987789999999999
Q ss_pred eeCCCc-ccccccCC-------------------CCCCHHHHHHHH----h--hccHHHHhh-----hCCcccCCCCchh
Q psy11859 364 CHPDQK-VLEEKLYP-------------------SPVSPHDIMRAM----E--WMDDETIKQ-----LTPKILGPHPNSY 412 (851)
Q Consensus 364 ~~~~~~-~i~E~~~~-------------------~p~~~~~~~~~~----~--~~~~~~~~~-----~~~~~~~~~~n~Y 412 (851)
+||+.. .+.|+.|+ .+.+++++++++ + +.+++..+. ++++++++|||+|
T Consensus 271 VyG~~~G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtY 350 (605)
T PLN02503 271 VNGQRQGRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTY 350 (605)
T ss_pred eecCCCCeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChH
Confidence 999985 89999886 456888888887 2 333344444 7788999999999
Q ss_pred hHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhHhhhhcCCceEEEEcccCceeEEEeecC--------------
Q psy11859 413 TFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDSLNGPVGVLVASGKGVVRSMILNDL-------------- 478 (851)
Q Consensus 413 ~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~i~~~~~~~~~~~~~g~~v~~~~~~~~~-------------- 478 (851)
++||++||++|+++..++|++|+||++|.+++.+|+|||+++.....+..+..|+|+++.++++++
T Consensus 351 t~TK~lAE~lV~~~~~~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p~~~~~g~G~lr~~~~~~~~~~DiVPVD~vvna 430 (605)
T PLN02503 351 VFTKAMGEMVINSMRGDIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLYYGKGQLTGFLADPNGVLDVVPADMVVNA 430 (605)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEcCCEecccccCCccccccCccccchhhhheeccceeEEEeCCCeeEeEEeecHHHHH
Confidence 999999999999888899999999999999999999999999554444444556888887776654
Q ss_pred ------------CCCccEEEEeCCCCccccHHHHHHHHHHHhhcCCCCCccccCcceeccchHHHHHHHHHHHHHHHHHH
Q psy11859 479 ------------STETQVFNISSNEVEAITWGEIISRGKQLIYQYPLEAGLWYPNGQIRSNRFWHYFFVIFTQILPAYLV 546 (851)
Q Consensus 479 ------------~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~lpa~~~ 546 (851)
...++|||++++..+|++|.++++.+.+++...|+....|+|. ..+.+.+.+.+..+++|+ +.
T Consensus 431 ~i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~~P~~~~~~~~~-~~~~~~~~~~~~~~~~h~----~~ 505 (605)
T PLN02503 431 TLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHYKSSPYMDSKGRPI-HVPPMKLFSSMEDFSSHL----WR 505 (605)
T ss_pred HHHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhhCCcccccCcce-eccCceehhhHHHHHHHH----HH
Confidence 1246899999998899999999999999999999999999997 447788888888888885 57
Q ss_pred HHHHHHc-----CCChHHHHHHHHH--------HHHHHhccccccCeEEEcChhHHHHHHhcCccCCCccccccccCCHH
Q psy11859 547 DFIMVLI-----RQKTFLVRVQNRI--------WLGMHLLEYFTTRNWDFKNKRLLALHDNISEKDKQTFYIANIDVNID 613 (851)
Q Consensus 547 d~~~~l~-----G~~p~l~~~~~ki--------~~~~~~~~~f~~~~w~f~~~n~~~l~~~l~~~d~~~F~~d~~~i~W~ 613 (851)
|+++++. |++|++.+.++++ .++.++++||++++|.|+++|+++|++.|+++||++|+||++.|||+
T Consensus 506 d~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ft~~~w~F~~~n~~~L~~~ms~~Dr~~F~~D~~~idW~ 585 (605)
T PLN02503 506 DALLRSGLAGMSSSDRKLSQKLENICAKSVEQAKYLASIYEPYTFYGGRFDNSNTQRLMERMSEEEKAEFGFDVGSIDWR 585 (605)
T ss_pred HHHHHHhhhcccccChHHHHHHHHHHHHHHHHHHHHHHHHhhheeCeEEEechHHHHHHHhCCHHHhhccCCCcCCCCHH
Confidence 7777664 4789888888755 44999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHhhhCCC
Q psy11859 614 DYLKT-IILGARQYCLKEP 631 (851)
Q Consensus 614 ~Y~~~-~~~GirkyllKe~ 631 (851)
+||.+ |++|+|+|++|+-
T Consensus 586 ~Y~~~~~i~G~rky~lk~~ 604 (605)
T PLN02503 586 DYITNVHIPGLRRHVMKGR 604 (605)
T ss_pred HHHHHhhhhHHHHHHhccC
Confidence 99997 9999999999983
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-53 Score=463.77 Aligned_cols=359 Identities=19% Similarity=0.183 Sum_probs=321.4
Q ss_pred HHHHHhhhhcccceeEEecCCCCCCCCcccccccccccccceecCC----CCCccccccccccc--chhhhhhhhhhHHH
Q psy11859 80 CEELALLGVTESNVYLIDIDGNGRFPPARVKCEFQEDSTKTIVEHN----LPDQTDVRGIHETD--FKFTIKYREFTQEM 153 (851)
Q Consensus 80 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ddd~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 153 (851)
-+++|+|||+ ||..+++++..+++ +.+|||+|||+.+++..+. +|... |.++++++ .+++|||||+++++
T Consensus 117 ~r~lIiGAG~-ag~~l~r~~~~~~~--~~pV~fiDdd~~~~g~~i~Gv~V~g~~~-i~~~v~~~~~~~iiiAips~~~~~ 192 (588)
T COG1086 117 IRLLIIGAGS-AGDLLLRALRRDPE--YTPVAFLDDDPDLTGMKIRGVPVLGRIE-IERVVEELGIQLILIAIPSASQEE 192 (588)
T ss_pred CceEEEcCch-HHHHHHHHHHhCCC--cceEEEECCChhhcCCEEeceeeechhH-HHHHHHHcCCceEEEecCCCCHHH
Confidence 4689999999 99999999998888 9999999999999665443 55555 99999988 49999999999999
Q ss_pred HHHhhhhhhhhhhhhcccccCCCCCCCCCCccCcccCcccccccccccCccccccccchhhhcCCCEEEEecCccHHHHH
Q psy11859 154 LSELISHSLYCRQRIKYECHQAPLDLHSATWFTSAANQSVDYVGDVKRGSCECADMGDVARWYAGRSVLVTGGTGFMGKV 233 (851)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~k~VlVTGatGFIG~~ 233 (851)
++++++.|...++.++.+|...++.. ..+..++++++|+++|+++..+. +.+..+++||+||||||||.||+.
T Consensus 193 ~~~i~~~l~~~~~~v~~lP~~~~l~~-~~~~lreI~ieDLLgR~pV~~d~------~~i~~~~~gK~vLVTGagGSiGse 265 (588)
T COG1086 193 RRRILLRLARTGIAVRILPQLTDLKD-LNGQLREIEIEDLLGRPPVALDT------ELIGAMLTGKTVLVTGGGGSIGSE 265 (588)
T ss_pred HHHHHHHHHhcCCcEEecCcHHHHHH-hccccccCCHHHHhCCCCCCCCH------HHHHhHcCCCEEEEeCCCCcHHHH
Confidence 99999999999999999999999877 66789999999999999997777 789999999999999999999999
Q ss_pred HHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcCCCCHHHHHHHhcC-
Q psy11859 234 LLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEE- 312 (851)
Q Consensus 234 Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lgls~~~~~~~~~~- 312 (851)
||+++++.+| ++|++++|++.+. +.+...|++..| ..++.++.||++|.+ .+..++++
T Consensus 266 l~~qil~~~p--~~i~l~~~~E~~~-----------~~i~~el~~~~~--~~~~~~~igdVrD~~------~~~~~~~~~ 324 (588)
T COG1086 266 LCRQILKFNP--KEIILFSRDEYKL-----------YLIDMELREKFP--ELKLRFYIGDVRDRD------RVERAMEGH 324 (588)
T ss_pred HHHHHHhcCC--CEEEEecCchHHH-----------HHHHHHHHhhCC--CcceEEEecccccHH------HHHHHHhcC
Confidence 9999999987 8999999998763 233344555555 458999999999997 89999987
Q ss_pred -ccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHH
Q psy11859 313 -VSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRA 388 (851)
Q Consensus 313 -vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~ 388 (851)
||+|||+||.++++ .+|.+++++||.||.|++++|.+++ +++||.+|| ++.++|
T Consensus 325 kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~-V~~~V~iST---------------DKAV~P------ 382 (588)
T COG1086 325 KVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNG-VKKFVLIST---------------DKAVNP------ 382 (588)
T ss_pred CCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhC-CCEEEEEec---------------CcccCC------
Confidence 99999999999985 6899999999999999999999996 999999999 666666
Q ss_pred HhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEecccccCCCCCCchhHhhhhcCCceEEE
Q psy11859 389 MEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVRPSIVLPSFQEPVPGWVDSLNGPVGVLV 463 (851)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivRp~~V~G~~~~p~p~~i~~~~~~~~~~~ 463 (851)
+|.||.||++||++++.++. +..++++|+|||.|++++.+|.|.+++..++|+++
T Consensus 383 --------------------tNvmGaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrGSViPlFk~QI~~GgplTv 442 (588)
T COG1086 383 --------------------TNVMGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRGSVIPLFKKQIAEGGPLTV 442 (588)
T ss_pred --------------------chHhhHHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCCCCCHHHHHHHHHcCCCccc
Confidence 67799999999999998865 48899999999999999999999999999999998
Q ss_pred EcccCceeEEEeecC-----------CCCccEEEEeCCCCccccHHHHHHHHHHHhhcCCCCC
Q psy11859 464 ASGKGVVRSMILNDL-----------STETQVFNISSNEVEAITWGEIISRGKQLIYQYPLEA 515 (851)
Q Consensus 464 ~~g~~v~~~~~~~~~-----------~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~p~~~ 515 (851)
+ ..++.|+++..++ ..+|++|.+.+| .|+++.|+++.+.+++|..|...
T Consensus 443 T-dp~mtRyfMTI~EAv~LVlqA~a~~~gGeifvldMG--epvkI~dLAk~mi~l~g~~~~~d 502 (588)
T COG1086 443 T-DPDMTRFFMTIPEAVQLVLQAGAIAKGGEIFVLDMG--EPVKIIDLAKAMIELAGQTPPGD 502 (588)
T ss_pred c-CCCceeEEEEHHHHHHHHHHHHhhcCCCcEEEEcCC--CCeEHHHHHHHHHHHhCCCCCCC
Confidence 8 7889999999988 568999999999 79999999999999999777554
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=293.10 Aligned_cols=271 Identities=22% Similarity=0.298 Sum_probs=212.4
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCC--eEEEEcCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSR--LHIIEGDILQ 296 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~--v~~v~gDi~~ 296 (851)
|+||||||+||||||.|.+|++.| +.|.++++-..+.. +- ..+ +.+++|||+|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G---~~vvV~DNL~~g~~--~~--------------------v~~~~~~f~~gDi~D 55 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTG---HEVVVLDNLSNGHK--IA--------------------LLKLQFKFYEGDLLD 55 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCC---CeEEEEecCCCCCH--HH--------------------hhhccCceEEecccc
Confidence 689999999999999999999998 78888888776631 11 112 5799999999
Q ss_pred CcCCCCHHHHHHHhc--CccEEEEccccCCcchh---HHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--
Q psy11859 297 ANLGIKDSDLLMLQE--EVSVVFNGAASLKLEAE---LKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK-- 369 (851)
Q Consensus 297 ~~lgls~~~~~~~~~--~vd~ViH~AA~~~~~~~---~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~-- 369 (851)
.. .+..+++ ++|.|||+||...+.++ |-+++++||.||.+||+++++.+ +++|||.|||.+||...
T Consensus 56 ~~------~L~~vf~~~~idaViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~g-v~~~vFSStAavYG~p~~~ 128 (329)
T COG1087 56 RA------LLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTG-VKKFIFSSTAAVYGEPTTS 128 (329)
T ss_pred HH------HHHHHHHhcCCCEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhC-CCEEEEecchhhcCCCCCc
Confidence 87 5666664 79999999999998765 56889999999999999999996 99999999999999765
Q ss_pred ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC
Q psy11859 370 VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP 447 (851)
Q Consensus 370 ~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p 447 (851)
|+.|+.+..|.|| ||.||.+.|+++..++. +++++++|.+|+.|+..+.
T Consensus 129 PI~E~~~~~p~NP-----------------------------YG~sKlm~E~iL~d~~~a~~~~~v~LRYFN~aGA~~~G 179 (329)
T COG1087 129 PISETSPLAPINP-----------------------------YGRSKLMSEEILRDAAKANPFKVVILRYFNVAGACPDG 179 (329)
T ss_pred ccCCCCCCCCCCc-----------------------------chhHHHHHHHHHHHHHHhCCCcEEEEEecccccCCCCC
Confidence 8999998888877 99999999999998876 9999999999999976431
Q ss_pred ------------chhHhhhhcCCceEEEEcccC--------ceeEEEeecC------------C-CCccEEEEeCCCCcc
Q psy11859 448 ------------VPGWVDSLNGPVGVLVASGKG--------VVRSMILNDL------------S-TETQVFNISSNEVEA 494 (851)
Q Consensus 448 ------------~p~~i~~~~~~~~~~~~~g~~--------v~~~~~~~~~------------~-~~~~iyni~~~~~~~ 494 (851)
+|..++...|....+...|+| +-++++..+- . ....+||+++| +.
T Consensus 180 ~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYIHV~DLA~aH~~Al~~L~~~g~~~~~NLG~G--~G 257 (329)
T COG1087 180 TLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIHVDDLADAHVLALKYLKEGGSNNIFNLGSG--NG 257 (329)
T ss_pred ccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeeeehhHHHHHHHHHHHHHHhCCceeEEEccCC--Cc
Confidence 677777777777755555643 3333433222 2 22369999999 78
Q ss_pred ccHHHHHHHHHHHhhc-CCCCCccccCcceeccchHHHHHHHHHHHHHHHHHH--HHHHHHcCCChHHHHHHHHHHHHH
Q psy11859 495 ITWGEIISRGKQLIYQ-YPLEAGLWYPNGQIRSNRFWHYFFVIFTQILPAYLV--DFIMVLIRQKTFLVRVQNRIWLGM 570 (851)
Q Consensus 495 ~t~~el~~~~~~~~~~-~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~lpa~~~--d~~~~l~G~~p~l~~~~~ki~~~~ 570 (851)
.|..|+++.+.+..|. .|.....++|+-. |+.+. +.+...+|++|....+..-+..++
T Consensus 258 ~SV~evi~a~~~vtg~~ip~~~~~RR~GDp------------------a~l~Ad~~kA~~~Lgw~p~~~~L~~ii~~aw 318 (329)
T COG1087 258 FSVLEVIEAAKKVTGRDIPVEIAPRRAGDP------------------AILVADSSKARQILGWQPTYDDLEDIIKDAW 318 (329)
T ss_pred eeHHHHHHHHHHHhCCcCceeeCCCCCCCC------------------ceeEeCHHHHHHHhCCCcccCCHHHHHHHHH
Confidence 9999999999999985 4555555566542 23333 457789999998766665554443
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=290.15 Aligned_cols=291 Identities=22% Similarity=0.265 Sum_probs=227.7
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|++|||||+||||+++++.+++..|+ .+|.+++.-.-.- ..+.+..+.+ .++..+++|||.|..
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d-~~v~~~DkLTYAg-n~~~l~~~~~--------------~~~~~fv~~DI~D~~ 64 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPD-DHVVNLDKLTYAG-NLENLADVED--------------SPRYRFVQGDICDRE 64 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCC-ceEEEEecccccC-CHHHHHhhhc--------------CCCceEEeccccCHH
Confidence 57999999999999999999999887 5677777654321 1223333322 348899999999987
Q ss_pred CCCCHHHHHHHhc--CccEEEEccccCCcchh---HHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc----
Q psy11859 299 LGIKDSDLLMLQE--EVSVVFNGAASLKLEAE---LKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK---- 369 (851)
Q Consensus 299 lgls~~~~~~~~~--~vd~ViH~AA~~~~~~~---~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~---- 369 (851)
.+..++. ++|+|+|+||-.+++.+ |..++++||.||.+|||+|++.....+|+||||--|||+..
T Consensus 65 ------~v~~~~~~~~~D~VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~ 138 (340)
T COG1088 65 ------LVDRLFKEYQPDAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDD 138 (340)
T ss_pred ------HHHHHHHhcCCCeEEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCC
Confidence 6777777 69999999999999864 66889999999999999999986446999999999998754
Q ss_pred ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC
Q psy11859 370 VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP 447 (851)
Q Consensus 370 ~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p 447 (851)
.++|+.+..|.+| |.+||+.+.++++++.. |+|++|.|++|-|||.+-|
T Consensus 139 ~FtE~tp~~PsSP-----------------------------YSASKAasD~lVray~~TYglp~~ItrcSNNYGPyqfp 189 (340)
T COG1088 139 AFTETTPYNPSSP-----------------------------YSASKAASDLLVRAYVRTYGLPATITRCSNNYGPYQFP 189 (340)
T ss_pred CcccCCCCCCCCC-----------------------------cchhhhhHHHHHHHHHHHcCCceEEecCCCCcCCCcCc
Confidence 4778888888888 99999999999999987 9999999999999999987
Q ss_pred ---chhHhhh-hcCCceEEEEcccCceeEEEeecC----------CCCccEEEEeCCCCccccHHHHHHHHHHHhhcCCC
Q psy11859 448 ---VPGWVDS-LNGPVGVLVASGKGVVRSMILNDL----------STETQVFNISSNEVEAITWGEIISRGKQLIYQYPL 513 (851)
Q Consensus 448 ---~p~~i~~-~~~~~~~~~~~g~~v~~~~~~~~~----------~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~p~ 513 (851)
+|..+.+ +.|....+.|.|..+-..++..+. ...|++|||+++ +-.+..|+++.+.+.+++...
T Consensus 190 EKlIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh~~ai~~Vl~kg~~GE~YNIgg~--~E~~Nlevv~~i~~~l~~~~~ 267 (340)
T COG1088 190 EKLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLVLTKGKIGETYNIGGG--NERTNLEVVKTICELLGKDKP 267 (340)
T ss_pred hhhhHHHHHHHHcCCCCceecCCcceeeeEEeHhHHHHHHHHHhcCcCCceEEeCCC--ccchHHHHHHHHHHHhCcccc
Confidence 9999888 778888889999887777776544 557999999999 668999999999999987432
Q ss_pred C------CccccCcceeccchHHHHHHHHHHHHHHHHHH--HHHHHHcCCChHHHHHHHHHHHHHHhccccccCeEEEc
Q psy11859 514 E------AGLWYPNGQIRSNRFWHYFFVIFTQILPAYLV--DFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFK 584 (851)
Q Consensus 514 ~------~~~~~p~~~~~~~~~~~~~~~~~~~~lpa~~~--d~~~~l~G~~p~l~~~~~ki~~~~~~~~~f~~~~w~f~ 584 (851)
. ..--+|+... -|.+ ..+.+-+|++|. ......+ .+..++|..++|=|.
T Consensus 268 ~~~~li~~V~DRpGHD~------------------RYaid~~Ki~~eLgW~P~-~~fe~Gl---rkTv~WY~~N~~Ww~ 324 (340)
T COG1088 268 DYRDLITFVEDRPGHDR------------------RYAIDASKIKRELGWRPQ-ETFETGL---RKTVDWYLDNEWWWE 324 (340)
T ss_pred chhhheEeccCCCCCcc------------------ceeechHHHhhhcCCCcC-CCHHHHH---HHHHHHHHhchHHHh
Confidence 1 1122343321 1233 346778899984 3334333 345667777777554
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=306.42 Aligned_cols=228 Identities=25% Similarity=0.306 Sum_probs=173.5
Q ss_pred EEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcc--cCCCeEEEEcCCCCCc
Q psy11859 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPA--QLSRLHIIEGDILQAN 298 (851)
Q Consensus 221 VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~--~~~~v~~v~gDi~~~~ 298 (851)
||||||+|+||+.||++|++.+| ++|++++|++.+.. .+-..++...++ ....+.++.||++|.+
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p--~~lil~d~~E~~l~-----------~l~~~l~~~~~~~~v~~~~~~vigDvrd~~ 67 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP--KKLILFDRDENKLY-----------ELERELRSRFPDPKVRFEIVPVIGDVRDKE 67 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB---SEEEEEES-HHHHH-----------HHHHHCHHHC--TTCEEEEE--CTSCCHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCC--CeEEEeCCChhHHH-----------HHHHHHhhcccccCcccccCceeecccCHH
Confidence 79999999999999999999988 89999999875421 111223322232 1123567799999987
Q ss_pred CCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCccccc
Q psy11859 299 LGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEE 373 (851)
Q Consensus 299 lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E 373 (851)
.+..+++ ++|+|||+||..+++ .+|.+++++||.||.|++++|.+++ +++||++||
T Consensus 68 ------~l~~~~~~~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~-v~~~v~IST------------ 128 (293)
T PF02719_consen 68 ------RLNRIFEEYKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHG-VERFVFIST------------ 128 (293)
T ss_dssp ------HHHHHTT--T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT--SEEEEEEE------------
T ss_pred ------HHHHHHhhcCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEccc------------
Confidence 8888988 999999999999985 5789999999999999999999996 999999999
Q ss_pred ccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEecccccCCCCCCc
Q psy11859 374 KLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVRPSIVLPSFQEPV 448 (851)
Q Consensus 374 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivRp~~V~G~~~~p~ 448 (851)
++.++| .|.||.||++||+++..++. +..+++||+|||+|+.++.+
T Consensus 129 ---DKAv~P--------------------------tnvmGatKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~GSVi 179 (293)
T PF02719_consen 129 ---DKAVNP--------------------------TNVMGATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRGSVI 179 (293)
T ss_dssp ---CGCSS----------------------------SHHHHHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGTTSCH
T ss_pred ---cccCCC--------------------------CcHHHHHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCCCcHH
Confidence 555555 56799999999999999876 46899999999999999999
Q ss_pred hhHhhhhcCCceEEEEcccCceeEEEeecC-----------CCCccEEEEeCCCCccccHHHHHHHHHHHhhcCC
Q psy11859 449 PGWVDSLNGPVGVLVASGKGVVRSMILNDL-----------STETQVFNISSNEVEAITWGEIISRGKQLIYQYP 512 (851)
Q Consensus 449 p~~i~~~~~~~~~~~~~g~~v~~~~~~~~~-----------~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~p 512 (851)
|.|.+++..+.|+.++ +.++.|+++..++ ...|++|.+.+| .|+++.|+++.+.+..|..|
T Consensus 180 p~F~~Qi~~g~PlTvT-~p~mtRffmti~EAv~Lvl~a~~~~~~geifvl~mg--~~v~I~dlA~~~i~~~g~~~ 251 (293)
T PF02719_consen 180 PLFKKQIKNGGPLTVT-DPDMTRFFMTIEEAVQLVLQAAALAKGGEIFVLDMG--EPVKILDLAEAMIELSGLEP 251 (293)
T ss_dssp HHHHHHHHTTSSEEEC-ETT-EEEEE-HHHHHHHHHHHHHH--TTEEEEE-----TCEECCCHHHHHHHHTT-EE
T ss_pred HHHHHHHHcCCcceeC-CCCcEEEEecHHHHHHHHHHHHhhCCCCcEEEecCC--CCcCHHHHHHHHHhhccccc
Confidence 9999999999999888 7899999998877 567899999999 78999999999999988543
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=297.46 Aligned_cols=197 Identities=39% Similarity=0.584 Sum_probs=136.2
Q ss_pred EecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHH-hcChhhHHHhhhCcccCCCeEEEEcCCCCCcCCC
Q psy11859 223 VTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEF-SKLPVFERLRKECPAQLSRLHIIEGDILQANLGI 301 (851)
Q Consensus 223 VTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~-~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lgl 301 (851)
|||||||||++|+++||+.++++ +|++|+|+++...+.+|+.+. .....+..+.+ ...++|+++.||+++++|||
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~-~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~---~~~~ri~~v~GDl~~~~lGL 76 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDV-KIYCLVRASSSQSALERLKDALKEYGLWDDLDK---EALSRIEVVEGDLSQPNLGL 76 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TT-EEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-H---HHTTTEEEEE--TTSGGGG-
T ss_pred CcCCCcHHHHHHHHHHHcCCCCc-EEEEEEeCcccccchhhhhhhcccccchhhhhh---hhhccEEEEeccccccccCC
Confidence 79999999999999999998666 999999998877788888644 44555554422 23579999999999999999
Q ss_pred CHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc-ccccccCCCCC
Q psy11859 302 KDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK-VLEEKLYPSPV 380 (851)
Q Consensus 302 s~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~-~i~E~~~~~p~ 380 (851)
+++++..+.+++|+|||+||.+++..+++++.++||.||++|+++|.+.+ .++|+|+||+++.+... .+.|..++.
T Consensus 77 ~~~~~~~L~~~v~~IiH~Aa~v~~~~~~~~~~~~NV~gt~~ll~la~~~~-~~~~~~iSTa~v~~~~~~~~~~~~~~~-- 153 (249)
T PF07993_consen 77 SDEDYQELAEEVDVIIHCAASVNFNAPYSELRAVNVDGTRNLLRLAAQGK-RKRFHYISTAYVAGSRPGTIEEKVYPE-- 153 (249)
T ss_dssp -HHHHHHHHHH--EEEE--SS-SBS-S--EEHHHHHHHHHHHHHHHTSSS----EEEEEEGGGTTS-TTT--SSS-HH--
T ss_pred ChHHhhccccccceeeecchhhhhcccchhhhhhHHHHHHHHHHHHHhcc-CcceEEeccccccCCCCCccccccccc--
Confidence 99999999999999999999999999999999999999999999998775 55999999988877654 333322110
Q ss_pred CHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCC
Q psy11859 381 SPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPS 443 (851)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~ 443 (851)
+.........++|+|+.||++||+++.++.. ++|++|+|||+|+|.
T Consensus 154 -----------------~~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~ 201 (249)
T PF07993_consen 154 -----------------EEDDLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGD 201 (249)
T ss_dssp -----------------H--EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-S
T ss_pred -----------------ccccchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCccccc
Confidence 0011123345689999999999999998874 999999999999994
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-30 Score=286.37 Aligned_cols=244 Identities=23% Similarity=0.280 Sum_probs=181.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+|||||||||||++|+++|++.| .+|++++|...+.. ..+..+.. ........++.++.|||+
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g---~~V~~~d~~~~~~~--~~~~~~~~--------~~~~~~~~~~~~~~~Di~ 79 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLN---QTVIGLDNFSTGYQ--HNLDDVRT--------SVSEEQWSRFIFIQGDIR 79 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeCCCCcch--hhhhhhhh--------ccccccCCceEEEEccCC
Confidence 567999999999999999999999998 68889988654321 11111100 000112247889999999
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC--cc
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ--KV 370 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~--~~ 370 (851)
|.. .+..+++++|+|||+||..... .++....++|+.||.+|+++|++.+ +++|||+||+.+||.. .+
T Consensus 80 d~~------~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~-~~~~v~~SS~~vyg~~~~~~ 152 (348)
T PRK15181 80 KFT------DCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAH-VSSFTYAASSSTYGDHPDLP 152 (348)
T ss_pred CHH------HHHHHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEeechHhhCCCCCCC
Confidence 875 7888889999999999976543 3456789999999999999999985 8999999999888753 34
Q ss_pred cccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCC--
Q psy11859 371 LEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQE-- 446 (851)
Q Consensus 371 i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~-- 446 (851)
+.|+.+..|.++ |+.||.++|.++..+.. +++++++||++||||++.
T Consensus 153 ~~e~~~~~p~~~-----------------------------Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~ 203 (348)
T PRK15181 153 KIEERIGRPLSP-----------------------------YAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPN 203 (348)
T ss_pred CCCCCCCCCCCh-----------------------------hhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCC
Confidence 556555555555 99999999999988754 899999999999999753
Q ss_pred -----CchhHhhhhc-CCceEEEEccc---------CceeEEEeecC-C---CCccEEEEeCCCCccccHHHHHHHHHHH
Q psy11859 447 -----PVPGWVDSLN-GPVGVLVASGK---------GVVRSMILNDL-S---TETQVFNISSNEVEAITWGEIISRGKQL 507 (851)
Q Consensus 447 -----p~p~~i~~~~-~~~~~~~~~g~---------~v~~~~~~~~~-~---~~~~iyni~~~~~~~~t~~el~~~~~~~ 507 (851)
.+|.++..+. +....+.+.|. |+++++..+.. . ..+++||+++| .++|++|+++.+.+.
T Consensus 204 ~~~~~~i~~~~~~~~~~~~i~~~g~g~~~rd~i~v~D~a~a~~~~~~~~~~~~~~~~yni~~g--~~~s~~e~~~~i~~~ 281 (348)
T PRK15181 204 GAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQANLLSATTNDLASKNKVYNVAVG--DRTSLNELYYLIRDG 281 (348)
T ss_pred CccccCHHHHHHHHHcCCCcEEeCCCCceEeeEEHHHHHHHHHHHHhcccccCCCCEEEecCC--CcEeHHHHHHHHHHH
Confidence 2677777644 44434445443 23333322111 1 25689999998 689999999999988
Q ss_pred hhc
Q psy11859 508 IYQ 510 (851)
Q Consensus 508 ~~~ 510 (851)
.+.
T Consensus 282 ~~~ 284 (348)
T PRK15181 282 LNL 284 (348)
T ss_pred hCc
Confidence 763
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=278.83 Aligned_cols=236 Identities=25% Similarity=0.289 Sum_probs=179.1
Q ss_pred EEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcCCC
Q psy11859 222 LVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLGI 301 (851)
Q Consensus 222 lVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lgl 301 (851)
|||||+||||++|+++|++.|+ +..|.++++........ .+ ...+..+++.|||+|++
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~-~~~Vr~~d~~~~~~~~~-~~-----------------~~~~~~~~~~~Di~d~~--- 58 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGY-IYEVRVLDRSPPPKFLK-DL-----------------QKSGVKEYIQGDITDPE--- 58 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCC-ceEEEEcccccccccch-hh-----------------hcccceeEEEeccccHH---
Confidence 6999999999999999999985 67899999877642100 00 11123449999999987
Q ss_pred CHHHHHHHhcCccEEEEccccCCcch--hHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCC---Cccc---cc
Q psy11859 302 KDSDLLMLQEEVSVVFNGAASLKLEA--ELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPD---QKVL---EE 373 (851)
Q Consensus 302 s~~~~~~~~~~vd~ViH~AA~~~~~~--~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~---~~~i---~E 373 (851)
++..+++++|+|||+||.+.... +.++.+++||.||+||+++|++.+ +++|||+||+.+.++ ..++ +|
T Consensus 59 ---~l~~a~~g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~-VkrlVytSS~~vv~~~~~~~~~~~~dE 134 (280)
T PF01073_consen 59 ---SLEEALEGVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAG-VKRLVYTSSISVVFDNYKGDPIINGDE 134 (280)
T ss_pred ---HHHHHhcCCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEcCcceeEeccCCCCcccCCc
Confidence 99999999999999999887653 567899999999999999999985 999999999988765 2222 34
Q ss_pred ccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-------CCCEEEEecccccCCCCC
Q psy11859 374 KLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-------KLPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 374 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-------~l~~~ivRp~~V~G~~~~ 446 (851)
..+ .|.. +.+.|+.||++||+++.++.. .+.++++||+.||||++.
T Consensus 135 ~~~-~~~~--------------------------~~~~Y~~SK~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~ 187 (280)
T PF01073_consen 135 DTP-YPSS--------------------------PLDPYAESKALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQ 187 (280)
T ss_pred CCc-cccc--------------------------ccCchHHHHHHHHHHHHhhcccccccccceeEEEEeccEEeCcccc
Confidence 322 1111 246799999999999988764 489999999999999986
Q ss_pred C-chhHhhhhcCC-ceEEEEcccC---------ceeEEEeec---------CCCCccEEEEeCCCCcccc-HHHHHHHHH
Q psy11859 447 P-VPGWVDSLNGP-VGVLVASGKG---------VVRSMILND---------LSTETQVFNISSNEVEAIT-WGEIISRGK 505 (851)
Q Consensus 447 p-~p~~i~~~~~~-~~~~~~~g~~---------v~~~~~~~~---------~~~~~~iyni~~~~~~~~t-~~el~~~~~ 505 (851)
. .|.+.+.+..+ ..+.++.+.. ++.+++++. ....|++|+|+++ .|+. +.|+++.+.
T Consensus 188 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahvlA~~~L~~~~~~~~~~G~~y~itd~--~p~~~~~~f~~~~~ 265 (280)
T PF01073_consen 188 RLVPRLVKMVRSGLFLFQIGDGNNLFDFVYVENVAHAHVLAAQALLEPGKPERVAGQAYFITDG--EPVPSFWDFMRPLW 265 (280)
T ss_pred cccchhhHHHHhcccceeecCCCceECcEeHHHHHHHHHHHHHHhccccccccCCCcEEEEECC--CccCcHHHHHHHHH
Confidence 4 56666655443 4455554433 333333221 2357899999999 7888 999999999
Q ss_pred HHhhcCC
Q psy11859 506 QLIYQYP 512 (851)
Q Consensus 506 ~~~~~~p 512 (851)
+.+|..+
T Consensus 266 ~~~G~~~ 272 (280)
T PF01073_consen 266 EALGYPP 272 (280)
T ss_pred HHCCCCC
Confidence 9999644
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=277.82 Aligned_cols=202 Identities=27% Similarity=0.343 Sum_probs=166.3
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhc-ChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSK-LPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~-~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
++||+||||||+|.+|+++||.+-+ .+|+||+|..+...+.+|+...+. +..++. ...++|+++.||+.++
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~--~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e------~~~~ri~vv~gDl~e~ 72 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSD--AKVICLVRAQSDEAALARLEKTFDLYRHWDE------LSADRVEVVAGDLAEP 72 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCC--CcEEEEEecCCHHHHHHHHHHHhhhhhhhhh------hhcceEEEEecccccc
Confidence 5799999999999999999999864 799999999999889999987765 222222 2456999999999999
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccCC
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYP 377 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~~ 377 (851)
+|||++..+..+.+.+|.|||+||.+++-.++++....||.||.+++++|... +.|.|+||||+.+......-..+.-.
T Consensus 73 ~lGL~~~~~~~La~~vD~I~H~gA~Vn~v~pYs~L~~~NVlGT~evlrLa~~g-k~Kp~~yVSsisv~~~~~~~~~~~~~ 151 (382)
T COG3320 73 DLGLSERTWQELAENVDLIIHNAALVNHVFPYSELRGANVLGTAEVLRLAATG-KPKPLHYVSSISVGETEYYSNFTVDF 151 (382)
T ss_pred cCCCCHHHHHHHhhhcceEEecchhhcccCcHHHhcCcchHhHHHHHHHHhcC-CCceeEEEeeeeeccccccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999765 58999999999886654321111100
Q ss_pred CCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCC
Q psy11859 378 SPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-KLPVVIVRPSIVLPSFQEP 447 (851)
Q Consensus 378 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-~l~~~ivRp~~V~G~~~~p 447 (851)
...++ +...-++++++|+.|||.||.++.++.. |+|++|+|||.|.|....+
T Consensus 152 ~~~~~------------------~~~~~~~~~~GY~~SKwvaE~Lvr~A~~rGLpv~I~Rpg~I~gds~tG 204 (382)
T COG3320 152 DEISP------------------TRNVGQGLAGGYGRSKWVAEKLVREAGDRGLPVTIFRPGYITGDSRTG 204 (382)
T ss_pred ccccc------------------cccccCccCCCcchhHHHHHHHHHHHhhcCCCeEEEecCeeeccCccC
Confidence 00000 1123456789999999999999999877 9999999999999987743
|
|
| >KOG0747|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-29 Score=253.39 Aligned_cols=242 Identities=25% Similarity=0.351 Sum_probs=192.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+..++|+||||.||||++.+..+...-|+...|.+.--.--+. ...+++.. ..++..++++|+.
T Consensus 4 ~~~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~--~~~l~~~~--------------n~p~ykfv~~di~ 67 (331)
T KOG0747|consen 4 YKEKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSN--LKNLEPVR--------------NSPNYKFVEGDIA 67 (331)
T ss_pred CccceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccc--cchhhhhc--------------cCCCceEeecccc
Confidence 4458999999999999999999999988865554433332221 23333222 3457889999999
Q ss_pred CCcCCCCHHHHHHH--hcCccEEEEccccCCcchh---HHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc-
Q psy11859 296 QANLGIKDSDLLML--QEEVSVVFNGAASLKLEAE---LKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK- 369 (851)
Q Consensus 296 ~~~lgls~~~~~~~--~~~vd~ViH~AA~~~~~~~---~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~- 369 (851)
+.. ....+ .+++|.|+|.||..+++.+ +-+++.+|+.+|..||++++..+++++|||+||..|||+..
T Consensus 68 ~~~------~~~~~~~~~~id~vihfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~ 141 (331)
T KOG0747|consen 68 DAD------LVLYLFETEEIDTVIHFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDE 141 (331)
T ss_pred chH------HHHhhhccCchhhhhhhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCccc
Confidence 876 33333 3579999999999988753 45778999999999999999999999999999999998764
Q ss_pred -cc-ccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCC
Q psy11859 370 -VL-EEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 370 -~i-~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~ 445 (851)
.. .|...+.|.+| |++||++||++++++.. ++|++++|-++||||++
T Consensus 142 ~~~~~E~s~~nPtnp-----------------------------yAasKaAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q 192 (331)
T KOG0747|consen 142 DAVVGEASLLNPTNP-----------------------------YAASKAAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQ 192 (331)
T ss_pred cccccccccCCCCCc-----------------------------hHHHHHHHHHHHHHHhhccCCcEEEEeccCccCCCc
Confidence 33 37777777777 99999999999999987 99999999999999999
Q ss_pred CC---chhHhh-hhcCCceEEEEcccCceeEEEeecC----------CCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 446 EP---VPGWVD-SLNGPVGVLVASGKGVVRSMILNDL----------STETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 446 ~p---~p~~i~-~~~~~~~~~~~~g~~v~~~~~~~~~----------~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
.+ +|.|+. ...+....+.|+|......+++.+- +..|+||||++. -+++..|+++.+.+++.+
T Consensus 193 ~~~klipkFi~l~~~~~~~~i~g~g~~~rs~l~veD~~ea~~~v~~Kg~~geIYNIgtd--~e~~~~~l~k~i~eli~~ 269 (331)
T KOG0747|consen 193 YPEKLIPKFIKLAMRGKEYPIHGDGLQTRSYLYVEDVSEAFKAVLEKGELGEIYNIGTD--DEMRVIDLAKDICELFEK 269 (331)
T ss_pred ChHHHhHHHHHHHHhCCCcceecCcccceeeEeHHHHHHHHHHHHhcCCccceeeccCc--chhhHHHHHHHHHHHHHH
Confidence 77 899999 4677777888888765555554322 345899999988 679999999999998765
|
|
| >KOG1502|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=258.98 Aligned_cols=248 Identities=21% Similarity=0.297 Sum_probs=189.8
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
.+++|+|||||||||++|++.||.+| +.|...+|...+....+-+.++ +...+++..+.+||.|
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG---Y~V~gtVR~~~~~k~~~~L~~l-------------~~a~~~l~l~~aDL~d 68 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG---YTVRGTVRDPEDEKKTEHLRKL-------------EGAKERLKLFKADLLD 68 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC---CEEEEEEcCcchhhhHHHHHhc-------------ccCcccceEEeccccc
Confidence 67899999999999999999999999 8999999988763322223222 2344579999999999
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcchh--HHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC-c----
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLEAE--LKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ-K---- 369 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~--~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~-~---- 369 (851)
++ .+..+++++|.|||+|+.+.++.. ..+.++.+|.||.|+|++|++.+.|+|+|++||+.+-... .
T Consensus 69 ~~------sf~~ai~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~ 142 (327)
T KOG1502|consen 69 EG------SFDKAIDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGE 142 (327)
T ss_pred cc------hHHHHHhCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCC
Confidence 98 999999999999999999988643 4589999999999999999999889999999997553322 2
Q ss_pred --ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCC
Q psy11859 370 --VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 370 --~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~ 445 (851)
.++|+. |.|++...... +.|..||.+||+.+++++. +++++.+-|+.|+||.-
T Consensus 143 ~~vvdE~~---------------wsd~~~~~~~~--------~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l 199 (327)
T KOG1502|consen 143 NSVVDEES---------------WSDLDFCRCKK--------LWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGL 199 (327)
T ss_pred Cccccccc---------------CCcHHHHHhhH--------HHHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCc
Confidence 344443 23333222221 5599999999999999986 89999999999999987
Q ss_pred CCchh-----HhhhhcCCce------EEEEcccCceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHHHHhhcCC
Q psy11859 446 EPVPG-----WVDSLNGPVG------VLVASGKGVVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGKQLIYQYP 512 (851)
Q Consensus 446 ~p~p~-----~i~~~~~~~~------~~~~~g~~v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~p 512 (851)
.|.+. ....++|... ..+.+.+|++.+++.+.+ +...+.|.|.++. +++.|+++.+.+.+...|
T Consensus 200 ~~~l~~s~~~~l~~i~G~~~~~~n~~~~~VdVrDVA~AHv~a~E~~~a~GRyic~~~~---~~~~ei~~~l~~~~P~~~ 275 (327)
T KOG1502|consen 200 QPSLNSSLNALLKLIKGLAETYPNFWLAFVDVRDVALAHVLALEKPSAKGRYICVGEV---VSIKEIADILRELFPDYP 275 (327)
T ss_pred ccccchhHHHHHHHHhcccccCCCCceeeEeHHHHHHHHHHHHcCcccCceEEEecCc---ccHHHHHHHHHHhCCCCC
Confidence 66221 2222444221 123445778888777776 4566899888763 569999999999988766
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=270.23 Aligned_cols=234 Identities=22% Similarity=0.271 Sum_probs=171.4
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++|+|||||||||||++|++.|++.| .+|++++|...+. ...+..+. ...+++++.+|+.+
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G---~~V~~ldr~~~~~--~~~~~~~~--------------~~~~~~~~~~Di~~ 179 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRG---DEVIVIDNFFTGR--KENLVHLF--------------GNPRFELIRHDVVE 179 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeCCCCcc--HhHhhhhc--------------cCCceEEEECcccc
Confidence 46799999999999999999999998 6888888864331 11111100 01368899999987
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCc---chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--cc
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKL---EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--VL 371 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~---~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~i 371 (851)
+. +.++|+|||+||.... ..++.+.+++||.||.+|+++|++.+ . +||++||.++||+.. ++
T Consensus 180 ~~-----------~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g-~-r~V~~SS~~VYg~~~~~p~ 246 (436)
T PLN02166 180 PI-----------LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPLEHPQ 246 (436)
T ss_pred cc-----------ccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhC-C-EEEEECcHHHhCCCCCCCC
Confidence 64 2479999999997643 34567889999999999999999886 4 899999999988642 56
Q ss_pred ccccCC--CCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCC-
Q psy11859 372 EEKLYP--SPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQE- 446 (851)
Q Consensus 372 ~E~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~- 446 (851)
+|+.+. .|..+ .+.|+.||..+|+++..+.+ +++++++||++||||++.
T Consensus 247 ~E~~~~~~~p~~p--------------------------~s~Yg~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~ 300 (436)
T PLN02166 247 KETYWGNVNPIGE--------------------------RSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCL 300 (436)
T ss_pred CccccccCCCCCC--------------------------CCchHHHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCC
Confidence 665321 22222 24599999999999998865 899999999999999853
Q ss_pred ----CchhHhhhhcCCceE-EEEccc---------CceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 447 ----PVPGWVDSLNGPVGV-LVASGK---------GVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 447 ----p~p~~i~~~~~~~~~-~~~~g~---------~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
.++.|+.++..+.++ +++.|. |+++++....+...+++||++++ +++|+.|+++.+.+..+.
T Consensus 301 ~~~~~i~~~i~~~l~~~~i~v~g~g~~~rdfi~V~Dva~ai~~~~~~~~~giyNIgs~--~~~Si~ela~~I~~~~g~ 376 (436)
T PLN02166 301 DDGRVVSNFVAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGLVALMEGEHVGPFNLGNP--GEFTMLELAEVVKETIDS 376 (436)
T ss_pred CccchHHHHHHHHhcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhcCCCceEEeCCC--CcEeHHHHHHHHHHHhCC
Confidence 256777775444443 444442 22333222222344579999998 689999999999999875
|
|
| >KOG1430|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-27 Score=254.00 Aligned_cols=315 Identities=22% Similarity=0.268 Sum_probs=221.2
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++.+|+||||+||||.||+++|++.++ ..+|++++............ ......+++.+.||+.+
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~-~~~irv~D~~~~~~~~~~e~---------------~~~~~~~v~~~~~D~~~ 66 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENEL-KLEIRVVDKTPTQSNLPAEL---------------TGFRSGRVTVILGDLLD 66 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhccc-ccEEEEeccCccccccchhh---------------hcccCCceeEEecchhh
Confidence 456899999999999999999999975 47888888876421111110 00024589999999999
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCc--ch-hHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcc---
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKL--EA-ELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKV--- 370 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~--~~-~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~--- 370 (851)
.. .+...+.++ .|+|+||.... .. +.+.+.++||.||.+++++|.+.+ +++|||+||++|..+..+
T Consensus 67 ~~------~i~~a~~~~-~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~-v~~lIYtSs~~Vvf~g~~~~n 138 (361)
T KOG1430|consen 67 AN------SISNAFQGA-VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELG-VKRLIYTSSAYVVFGGEPIIN 138 (361)
T ss_pred hh------hhhhhccCc-eEEEeccccCccccccchhhheeecchhHHHHHHHHHHhC-CCEEEEecCceEEeCCeeccc
Confidence 87 888999999 88888886543 33 477889999999999999999996 999999999999766553
Q ss_pred cccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCC-C
Q psy11859 371 LEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQE-P 447 (851)
Q Consensus 371 i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~-p 447 (851)
-+|+. |.|.. +++.|+.||+.||+++.++++ ++.++++||+.||||++. .
T Consensus 139 ~~E~~-p~p~~--------------------------~~d~Y~~sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~~~ 191 (361)
T KOG1430|consen 139 GDESL-PYPLK--------------------------HIDPYGESKALAEKLVLEANGSDDLYTCALRPPGIYGPGDKRL 191 (361)
T ss_pred CCCCC-CCccc--------------------------cccccchHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCccc
Confidence 23333 33332 246699999999999999984 799999999999999986 4
Q ss_pred chhHhhhh-cCCceEEEEcccCceeEEEeecC----------------CCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 448 VPGWVDSL-NGPVGVLVASGKGVVRSMILNDL----------------STETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 448 ~p~~i~~~-~~~~~~~~~~g~~v~~~~~~~~~----------------~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
+|..+..+ +|......+.+..+-..++...- ...|++|+|+++ +|+...++...+.+.+|.
T Consensus 192 ~~~i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~ahilA~~aL~~~~~~~~Gq~yfI~d~--~p~~~~~~~~~l~~~lg~ 269 (361)
T KOG1430|consen 192 LPKIVEALKNGGFLFKIGDGENLNDFTYGENVAWAHILAARALLDKSPSVNGQFYFITDD--TPVRFFDFLSPLVKALGY 269 (361)
T ss_pred cHHHHHHHHccCceEEeeccccccceEEechhHHHHHHHHHHHHhcCCccCceEEEEeCC--CcchhhHHHHHHHHhcCC
Confidence 77777664 45555566666444444443311 457899999999 677777777788888886
Q ss_pred CCCCCccccCcceeccchHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHhccccccCeEEEcChhHH
Q psy11859 511 YPLEAGLWYPNGQIRSNRFWHYFFVIFTQILPAYLVDFIMVLIR-QKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLL 589 (851)
Q Consensus 511 ~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~lpa~~~d~~~~l~G-~~p~l~~~~~ki~~~~~~~~~f~~~~w~f~~~n~~ 589 (851)
.+.. ....|.. ..+.-+++..++..+++ ..|.+++....+ +.-.-.|+.++++
T Consensus 270 ~~~~-~~~~p~~---------------l~~~~~~l~e~~~~~l~p~~p~lt~~~v~~----------~~~~~~f~~~kA~ 323 (361)
T KOG1430|consen 270 CLPS-SIKLPLF---------------LSYFLAYLLEIVYFLLRPYQPILTRFRVAL----------LGVTRTFSIEKAK 323 (361)
T ss_pred CCCc-eeecchH---------------HHHHHHHHHHHHHHhccCCCCCcChhheee----------eccccccCHHHHH
Confidence 4432 2222321 12234677778888888 667766533222 1123457778888
Q ss_pred HHHHhcCccCCCccccccccCCHHHHHHHHHHH
Q psy11859 590 ALHDNISEKDKQTFYIANIDVNIDDYLKTIILG 622 (851)
Q Consensus 590 ~l~~~l~~~d~~~F~~d~~~i~W~~Y~~~~~~G 622 (851)
+.+.-.+ .++|++-+..++.-
T Consensus 324 ~~lgY~P------------~~~~~e~~~~~~~~ 344 (361)
T KOG1430|consen 324 RELGYKP------------LVSLEEAIQRTIHW 344 (361)
T ss_pred HhhCCCC------------cCCHHHHHHHHHHH
Confidence 7655432 34566666665543
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-27 Score=284.00 Aligned_cols=246 Identities=23% Similarity=0.283 Sum_probs=180.1
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
.+|++|+|||||||||||++|+++|++.+++ .+|++++|...... ...+. .. ....+++++.||
T Consensus 2 ~~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~-~~V~~~d~~~~~~~-~~~l~------------~~--~~~~~v~~~~~D 65 (668)
T PLN02260 2 ATYEPKNILITGAAGFIASHVANRLIRNYPD-YKIVVLDKLDYCSN-LKNLN------------PS--KSSPNFKFVKGD 65 (668)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHhCCC-CEEEEEeCCCccch-hhhhh------------hc--ccCCCeEEEECC
Confidence 5789999999999999999999999998654 57888887532111 11110 00 112478999999
Q ss_pred CCCCcCCCCHHHHHHHh--cCccEEEEccccCCcch---hHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC
Q psy11859 294 ILQANLGIKDSDLLMLQ--EEVSVVFNGAASLKLEA---ELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ 368 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~--~~vd~ViH~AA~~~~~~---~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~ 368 (851)
++|++ .+..++ .++|+|||+||....+. ++.+.+++|+.||.+|+++|++.+.+++|||+||+.+||+.
T Consensus 66 l~d~~------~~~~~~~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~ 139 (668)
T PLN02260 66 IASAD------LVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGET 139 (668)
T ss_pred CCChH------HHHHHHhhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCC
Confidence 99876 444443 68999999999887643 34578899999999999999988668999999999988864
Q ss_pred cc-----cccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEeccccc
Q psy11859 369 KV-----LEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVL 441 (851)
Q Consensus 369 ~~-----i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~ 441 (851)
.. ..|+.+..|. +.|+.||+.+|+++..+.. +++++|+||++||
T Consensus 140 ~~~~~~~~~E~~~~~p~-----------------------------~~Y~~sK~~aE~~v~~~~~~~~l~~vilR~~~Vy 190 (668)
T PLN02260 140 DEDADVGNHEASQLLPT-----------------------------NPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVY 190 (668)
T ss_pred ccccccCccccCCCCCC-----------------------------CCcHHHHHHHHHHHHHHHHHcCCCEEEECccccc
Confidence 31 1333333333 4599999999999988754 8999999999999
Q ss_pred CCCCCC---chhHhhhhcCCceE-EEEcccC---------ceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHHHH
Q psy11859 442 PSFQEP---VPGWVDSLNGPVGV-LVASGKG---------VVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGKQL 507 (851)
Q Consensus 442 G~~~~p---~p~~i~~~~~~~~~-~~~~g~~---------v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~~~ 507 (851)
||++.+ +|.|+..+..+.++ +.+.|.. +++++....+ ...+++||++++ +++++.|+++.+.+.
T Consensus 191 Gp~~~~~~~i~~~~~~a~~g~~i~i~g~g~~~r~~ihV~Dva~a~~~~l~~~~~~~vyni~~~--~~~s~~el~~~i~~~ 268 (668)
T PLN02260 191 GPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEVGHVYNIGTK--KERRVIDVAKDICKL 268 (668)
T ss_pred CcCCCcccHHHHHHHHHhCCCCeEEecCCCceEeeEEHHHHHHHHHHHHhcCCCCCEEEECCC--CeeEHHHHHHHHHHH
Confidence 998754 67777765443333 3344432 2222222222 335689999998 689999999999999
Q ss_pred hhcCC
Q psy11859 508 IYQYP 512 (851)
Q Consensus 508 ~~~~p 512 (851)
+|..+
T Consensus 269 ~g~~~ 273 (668)
T PLN02260 269 FGLDP 273 (668)
T ss_pred hCCCC
Confidence 88643
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=259.68 Aligned_cols=214 Identities=16% Similarity=0.158 Sum_probs=163.0
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+||||||+||||++|+++|++.| .|++++|... .+.||++|++
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g----~V~~~~~~~~--------------------------------~~~~Dl~d~~ 44 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG----NLIALDVHST--------------------------------DYCGDFSNPE 44 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC----CEEEeccccc--------------------------------cccCCCCCHH
Confidence 589999999999999999999886 2667776421 2468999886
Q ss_pred CCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--cc
Q psy11859 299 LGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--VL 371 (851)
Q Consensus 299 lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~i 371 (851)
.+..+++ ++|+|||+||....+ ..+..++++|+.||.+|+++|++.+ + +|||+||.++|+... ++
T Consensus 45 ------~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g-~-~~v~~Ss~~Vy~~~~~~p~ 116 (299)
T PRK09987 45 ------GVAETVRKIRPDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG-A-WVVHYSTDYVFPGTGDIPW 116 (299)
T ss_pred ------HHHHHHHhcCCCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEccceEECCCCCCCc
Confidence 6777766 589999999988764 3456778999999999999999986 4 799999999997643 78
Q ss_pred ccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCC-chh
Q psy11859 372 EEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEP-VPG 450 (851)
Q Consensus 372 ~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p-~p~ 450 (851)
+|+.++.|.++ ||.||+.+|+++..+. .+.+|+||++||||++.. ++.
T Consensus 117 ~E~~~~~P~~~-----------------------------Yg~sK~~~E~~~~~~~--~~~~ilR~~~vyGp~~~~~~~~ 165 (299)
T PRK09987 117 QETDATAPLNV-----------------------------YGETKLAGEKALQEHC--AKHLIFRTSWVYAGKGNNFAKT 165 (299)
T ss_pred CCCCCCCCCCH-----------------------------HHHHHHHHHHHHHHhC--CCEEEEecceecCCCCCCHHHH
Confidence 88877777766 9999999999998775 467999999999998654 566
Q ss_pred HhhhhcCCce-EEEEc--ccC---------ceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHHHHhh
Q psy11859 451 WVDSLNGPVG-VLVAS--GKG---------VVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGKQLIY 509 (851)
Q Consensus 451 ~i~~~~~~~~-~~~~~--g~~---------v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~~~~~ 509 (851)
+++.+..+.+ .++++ |.. +++++..... ...+++||++++ .++||.|+++.+.+..+
T Consensus 166 ~~~~~~~~~~~~v~~d~~g~~~~~~~~~d~~~~~~~~~~~~~~~~giyni~~~--~~~s~~e~~~~i~~~~~ 235 (299)
T PRK09987 166 MLRLAKEREELSVINDQFGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVAS--GTTTWHDYAALVFEEAR 235 (299)
T ss_pred HHHHHhcCCCeEEeCCCcCCCCCHHHHHHHHHHHHHHhhccCCCCCeEEeeCC--CCccHHHHHHHHHHHHH
Confidence 7776554433 34443 211 1222221111 223479999998 67999999999988654
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-27 Score=260.29 Aligned_cols=242 Identities=19% Similarity=0.224 Sum_probs=179.5
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
|++||+|||||||||||++|++.|++.| .+|++++|........ .. .+. ...++.++.+|+
T Consensus 1 ~~~~k~ilItGatG~IG~~l~~~L~~~G---~~V~~~~r~~~~~~~~--~~---------~~~-----~~~~~~~~~~Dl 61 (349)
T TIGR02622 1 FWQGKKVLVTGHTGFKGSWLSLWLLELG---AEVYGYSLDPPTSPNL--FE---------LLN-----LAKKIEDHFGDI 61 (349)
T ss_pred CcCCCEEEEECCCChhHHHHHHHHHHCC---CEEEEEeCCCccchhH--HH---------HHh-----hcCCceEEEccC
Confidence 5689999999999999999999999998 6788888876432111 00 000 012577899999
Q ss_pred CCCcCCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC-
Q psy11859 295 LQANLGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ- 368 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~- 368 (851)
++++ ++..+++ ++|+|||+||..... .++...+++|+.|+.+++++|++.+.+++||++||+.+|+..
T Consensus 62 ~~~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~ 135 (349)
T TIGR02622 62 RDAA------KLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDE 135 (349)
T ss_pred CCHH------HHHHHHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCC
Confidence 9876 7777776 479999999965443 345678999999999999999877547899999999888753
Q ss_pred --cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC---------CCCEEEEec
Q psy11859 369 --KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT---------KLPVVIVRP 437 (851)
Q Consensus 369 --~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~---------~l~~~ivRp 437 (851)
.++.|+.+..|.++ |+.||.++|.++..++. +++++++||
T Consensus 136 ~~~~~~e~~~~~p~~~-----------------------------Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~ 186 (349)
T TIGR02622 136 WVWGYRETDPLGGHDP-----------------------------YSSSKACAELVIASYRSSFFGVANFHGIKIASARA 186 (349)
T ss_pred CCCCCccCCCCCCCCc-----------------------------chhHHHHHHHHHHHHHHHhhcccccCCCcEEEEcc
Confidence 24566655555554 99999999999987642 799999999
Q ss_pred ccccCCCC----CCchhHhhhhcCCceEEEEcccCceeEEEeec---------CC------CCccEEEEeCCCCccccHH
Q psy11859 438 SIVLPSFQ----EPVPGWVDSLNGPVGVLVASGKGVVRSMILND---------LS------TETQVFNISSNEVEAITWG 498 (851)
Q Consensus 438 ~~V~G~~~----~p~p~~i~~~~~~~~~~~~~g~~v~~~~~~~~---------~~------~~~~iyni~~~~~~~~t~~ 498 (851)
++||||++ ..+|.++..+..+..+.++.|......++..+ +. ..+++||++++...++++.
T Consensus 187 ~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~rd~i~v~D~a~a~~~~~~~~~~~~~~~~~~yni~s~~~~~~s~~ 266 (349)
T TIGR02622 187 GNVIGGGDWAEDRLIPDVIRAFSSNKIVIIRNPDATRPWQHVLEPLSGYLLLAEKLFTGQAEFAGAWNFGPRASDNARVV 266 (349)
T ss_pred CcccCCCcchhhhhhHHHHHHHhcCCCeEECCCCcccceeeHHHHHHHHHHHHHHHhhcCccccceeeeCCCcccCcCHH
Confidence 99999975 23788888876666666665643322222211 11 2257999998643689999
Q ss_pred HHHHHHHHHhhc
Q psy11859 499 EIISRGKQLIYQ 510 (851)
Q Consensus 499 el~~~~~~~~~~ 510 (851)
|+++.+.+..+.
T Consensus 267 ~~~~~i~~~~~~ 278 (349)
T TIGR02622 267 ELVVDALEFWWG 278 (349)
T ss_pred HHHHHHHHHhcC
Confidence 999999887654
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=279.44 Aligned_cols=245 Identities=25% Similarity=0.349 Sum_probs=177.0
Q ss_pred CEEEEecCccHHHHHHHHHHHH--hCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLR--SCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~--~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
|+|||||||||||++|+++|++ .+ .+|++++|... ..++..+. ... ..++++++.||+++
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g---~~V~~l~R~~~----~~~~~~~~---------~~~--~~~~v~~~~~Dl~~ 62 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRRE---ATVHVLVRRQS----LSRLEALA---------AYW--GADRVVPLVGDLTE 62 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCC---CEEEEEECcch----HHHHHHHH---------Hhc--CCCcEEEEecccCC
Confidence 5899999999999999999995 44 78999999532 12222211 111 11479999999999
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc-cccccc
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK-VLEEKL 375 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~-~i~E~~ 375 (851)
+++|++.+.+..+ +++|+|||+||..++..+.....++|+.||.+++++|.+.+ +++|||+||+.++|... ..+|+.
T Consensus 63 ~~~~~~~~~~~~l-~~~D~Vih~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~v~~SS~~v~g~~~~~~~e~~ 140 (657)
T PRK07201 63 PGLGLSEADIAEL-GDIDHVVHLAAIYDLTADEEAQRAANVDGTRNVVELAERLQ-AATFHHVSSIAVAGDYEGVFREDD 140 (657)
T ss_pred ccCCcCHHHHHHh-cCCCEEEECceeecCCCCHHHHHHHHhHHHHHHHHHHHhcC-CCeEEEEeccccccCccCcccccc
Confidence 9999998888887 89999999999988777777889999999999999999885 89999999998887543 344443
Q ss_pred CCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCC----c--h
Q psy11859 376 YPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEP----V--P 449 (851)
Q Consensus 376 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p----~--p 449 (851)
.+.+.+ .++.|+.||+.+|+++.+. .+++++|+||++|||+...+ + +
T Consensus 141 ~~~~~~--------------------------~~~~Y~~sK~~~E~~~~~~-~g~~~~ilRp~~v~G~~~~g~~~~~~~~ 193 (657)
T PRK07201 141 FDEGQG--------------------------LPTPYHRTKFEAEKLVREE-CGLPWRVYRPAVVVGDSRTGEMDKIDGP 193 (657)
T ss_pred chhhcC--------------------------CCCchHHHHHHHHHHHHHc-CCCcEEEEcCCeeeecCCCCccccCCcH
Confidence 222222 2467999999999999753 48999999999999986532 1 1
Q ss_pred ----hHhhhhcCCc--eEEEEcc---------cCceeEEEeecC--CCCccEEEEeCCCCccccHHHHHHHHHHHhhcCC
Q psy11859 450 ----GWVDSLNGPV--GVLVASG---------KGVVRSMILNDL--STETQVFNISSNEVEAITWGEIISRGKQLIYQYP 512 (851)
Q Consensus 450 ----~~i~~~~~~~--~~~~~~g---------~~v~~~~~~~~~--~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~p 512 (851)
..+..+.... ....+.+ +|+++++....+ ...+++||++++ +++++.|+++.+.+.++..+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~g~~~ni~~~--~~~s~~el~~~i~~~~g~~~ 271 (657)
T PRK07201 194 YYFFKVLAKLAKLPSWLPMVGPDGGRTNIVPVDYVADALDHLMHKDGRDGQTFHLTDP--KPQRVGDIYNAFARAAGAPP 271 (657)
T ss_pred HHHHHHHHHhccCCcccccccCCCCeeeeeeHHHHHHHHHHHhcCcCCCCCEEEeCCC--CCCcHHHHHHHHHHHhCCCc
Confidence 1222221111 1111212 233333322222 345789999998 68999999999999988643
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=264.48 Aligned_cols=258 Identities=16% Similarity=0.119 Sum_probs=169.0
Q ss_pred chhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCH-HHHHHHHhcC-hhhHHHhhhCcccCCCeE
Q psy11859 211 DVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTP-KARLAEFSKL-PVFERLRKECPAQLSRLH 288 (851)
Q Consensus 211 ~i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~-~~rl~~~~~~-~~f~~l~~~~~~~~~~v~ 288 (851)
..+.-.++|+|||||||||||++|+++|++.| .+|++++|....... ...+...... ...+.+.........+++
T Consensus 40 ~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 116 (442)
T PLN02572 40 GSSSSSKKKKVMVIGGDGYCGWATALHLSKRG---YEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIE 116 (442)
T ss_pred CCCccccCCEEEEECCCcHHHHHHHHHHHHCC---CeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcce
Confidence 34556788999999999999999999999998 678887653221100 0000000000 000011000000113688
Q ss_pred EEEcCCCCCcCCCCHHHHHHHhc--CccEEEEccccCCcch------hHHHHHHHHHHHHHHHHHHHHhcCCce-EEEEe
Q psy11859 289 IIEGDILQANLGIKDSDLLMLQE--EVSVVFNGAASLKLEA------ELKENVAANTRGTQRLLDIALKMKKLV-AFIHF 359 (851)
Q Consensus 289 ~v~gDi~~~~lgls~~~~~~~~~--~vd~ViH~AA~~~~~~------~~~~~~~~Nv~Gt~~ll~~a~~~~~~~-~fV~v 359 (851)
++.+||+|++ .+..+++ ++|+|||+||...... .+...+++|+.||.+|+++|++.+ ++ +||++
T Consensus 117 ~v~~Dl~d~~------~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~g-v~~~~V~~ 189 (442)
T PLN02572 117 LYVGDICDFE------FLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFA-PDCHLVKL 189 (442)
T ss_pred EEECCCCCHH------HHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhC-CCccEEEE
Confidence 9999999886 7777776 5899999998754321 123457899999999999999886 65 89999
Q ss_pred eeeeeeCCC-ccccccc-----------CCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh
Q psy11859 360 STAFCHPDQ-KVLEEKL-----------YPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK 427 (851)
Q Consensus 360 STa~~~~~~-~~i~E~~-----------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~ 427 (851)
||..+||.. .+++|.. .+.|.+| .|.|+.||.++|.++..++
T Consensus 190 SS~~vYG~~~~~~~E~~i~~~~~~~e~~~~~~~~P--------------------------~s~Yg~SK~a~E~l~~~~~ 243 (442)
T PLN02572 190 GTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQA--------------------------SSFYHLSKVHDSHNIAFTC 243 (442)
T ss_pred ecceecCCCCCCCcccccccccccccccccCCCCC--------------------------CCcchhHHHHHHHHHHHHH
Confidence 999999853 2333321 1112222 3569999999999998876
Q ss_pred C--CCCEEEEecccccCCCCCC--------------------chhHhhhh-cCCceEEEEccc---------CceeEEEe
Q psy11859 428 T--KLPVVIVRPSIVLPSFQEP--------------------VPGWVDSL-NGPVGVLVASGK---------GVVRSMIL 475 (851)
Q Consensus 428 ~--~l~~~ivRp~~V~G~~~~p--------------------~p~~i~~~-~~~~~~~~~~g~---------~v~~~~~~ 475 (851)
. +++++++||++||||++.+ ++.++..+ .|....++|.|. |++++++.
T Consensus 244 ~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~~~~~~~i~~~~~~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~ 323 (442)
T PLN02572 244 KAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEI 323 (442)
T ss_pred HhcCCCEEEEecccccCCCCcccccccccccccCcccchhhHHHHHHHHHhcCCCceecCCCCEEECeEEHHHHHHHHHH
Confidence 5 9999999999999998532 34445443 343333445553 33333333
Q ss_pred ecCC--CCc--cEEEEeCCCCccccHHHHHHHHHHH
Q psy11859 476 NDLS--TET--QVFNISSNEVEAITWGEIISRGKQL 507 (851)
Q Consensus 476 ~~~~--~~~--~iyni~~~~~~~~t~~el~~~~~~~ 507 (851)
..+. ..+ .+||++++ ++|+.|+++.+.+.
T Consensus 324 al~~~~~~g~~~i~Nigs~---~~si~el~~~i~~~ 356 (442)
T PLN02572 324 AIANPAKPGEFRVFNQFTE---QFSVNELAKLVTKA 356 (442)
T ss_pred HHhChhhcCceeEEEeCCC---ceeHHHHHHHHHHH
Confidence 2222 123 58999753 59999999999998
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-27 Score=263.15 Aligned_cols=263 Identities=17% Similarity=0.178 Sum_probs=173.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
.+.|+|||||||||||++|+++|++.+. .+|++++|..... .++. .. ..+....+++++.||++
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g--~~V~~l~r~~~~~---~~l~---~~--------~~~~~~~~~~~~~~Dl~ 75 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETP--HKVLALDVYNDKI---KHLL---EP--------DTVPWSGRIQFHRINIK 75 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCC--CEEEEEecCchhh---hhhh---cc--------ccccCCCCeEEEEcCCC
Confidence 3558999999999999999999999732 5788888764221 1110 00 00112247999999999
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCc---chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--c
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKL---EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--V 370 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~---~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~ 370 (851)
|.. .+..+++++|+|||+||.... ..++.+.+..|+.||.+|+++|++.+ ++|||+||+++||... .
T Consensus 76 d~~------~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~SS~~vYg~~~~~~ 147 (386)
T PLN02427 76 HDS------RLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFSTCEVYGKTIGSF 147 (386)
T ss_pred ChH------HHHHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEeeeeeeCCCcCCC
Confidence 876 788888899999999997643 23445667899999999999998874 7999999999998642 3
Q ss_pred cccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC-
Q psy11859 371 LEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP- 447 (851)
Q Consensus 371 i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p- 447 (851)
++|+.+..+..... ..+++ .............+.|+.||+++|+++..+.. +++++|+||++||||++..
T Consensus 148 ~~e~~p~~~~~~~~------~~~e~-~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~ 220 (386)
T PLN02427 148 LPKDHPLRQDPAFY------VLKED-ESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFI 220 (386)
T ss_pred CCcccccccccccc------ccccc-ccccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCcc
Confidence 44443222110000 00000 00000001111236799999999999988754 8999999999999997532
Q ss_pred -------------chhHhhhh-cCCceEEEEccc---------CceeEEEeecCC---CCccEEEEeCCCCccccHHHHH
Q psy11859 448 -------------VPGWVDSL-NGPVGVLVASGK---------GVVRSMILNDLS---TETQVFNISSNEVEAITWGEII 501 (851)
Q Consensus 448 -------------~p~~i~~~-~~~~~~~~~~g~---------~v~~~~~~~~~~---~~~~iyni~~~~~~~~t~~el~ 501 (851)
++.++..+ .+....+.+.|. |+++++....+. ..+++||++++. .++|+.|++
T Consensus 221 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~g~~~r~~i~V~Dva~ai~~al~~~~~~~g~~yni~~~~-~~~s~~el~ 299 (386)
T PLN02427 221 PGIDGPSEGVPRVLACFSNNLLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPN-NEVTVRQLA 299 (386)
T ss_pred ccccccccccchHHHHHHHHHhcCCCeEEECCCCceECcEeHHHHHHHHHHHHhCcccccCceEEeCCCC-CCccHHHHH
Confidence 23344443 343333444332 333333322222 246799999862 379999999
Q ss_pred HHHHHHhhc
Q psy11859 502 SRGKQLIYQ 510 (851)
Q Consensus 502 ~~~~~~~~~ 510 (851)
+.+.+.++.
T Consensus 300 ~~i~~~~g~ 308 (386)
T PLN02427 300 EMMTEVYAK 308 (386)
T ss_pred HHHHHHhcc
Confidence 999999875
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-27 Score=259.35 Aligned_cols=242 Identities=17% Similarity=0.219 Sum_probs=170.6
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|++.+. ..|++++|.... ...+. + ..+++++.+|++++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~--~~V~~~~r~~~~------~~~~~------------~--~~~~~~~~~Dl~~~~ 59 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTD--WEVYGMDMQTDR------LGDLV------------N--HPRMHFFEGDITINK 59 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCC--CeEEEEeCcHHH------HHHhc------------c--CCCeEEEeCCCCCCH
Confidence 6899999999999999999998632 688998875321 11110 1 136899999998432
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCc---chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--cccc
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKL---EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--VLEE 373 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~---~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~i~E 373 (851)
..+..+++++|+|||+||.... ..++...+++|+.||.+|+++|++.+ ++|||+||+.+||... ++.|
T Consensus 60 -----~~~~~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS~~vyg~~~~~~~~e 132 (347)
T PRK11908 60 -----EWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPSTSEVYGMCPDEEFDP 132 (347)
T ss_pred -----HHHHHHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEecceeeccCCCcCcCc
Confidence 2566778899999999997543 34567789999999999999999875 6999999998888542 4444
Q ss_pred ccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC----
Q psy11859 374 KLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP---- 447 (851)
Q Consensus 374 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p---- 447 (851)
+..+.+..| ..+..+.|+.||.++|+++..+.. +++++++||++||||+..+
T Consensus 133 e~~~~~~~~----------------------~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~ 190 (347)
T PRK11908 133 EASPLVYGP----------------------INKPRWIYACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTP 190 (347)
T ss_pred cccccccCc----------------------CCCccchHHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCcc
Confidence 432211111 001135699999999999988753 9999999999999997532
Q ss_pred -------chhHhhhhcCCceEEE-Eccc---------CceeEEEeecCC----CCccEEEEeCCCCccccHHHHHHHHHH
Q psy11859 448 -------VPGWVDSLNGPVGVLV-ASGK---------GVVRSMILNDLS----TETQVFNISSNEVEAITWGEIISRGKQ 506 (851)
Q Consensus 448 -------~p~~i~~~~~~~~~~~-~~g~---------~v~~~~~~~~~~----~~~~iyni~~~~~~~~t~~el~~~~~~ 506 (851)
++.++..+..+.++.+ +.|. |+++++....+. ..+++||++++. +++|+.|+++.+.+
T Consensus 191 ~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v~D~a~a~~~~~~~~~~~~~g~~yni~~~~-~~~s~~e~~~~i~~ 269 (347)
T PRK11908 191 KEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDIDDGIDALMKIIENKDGVASGKIYNIGNPK-NNHSVRELANKMLE 269 (347)
T ss_pred ccCCcchHHHHHHHHhCCCceEEecCCceeeccccHHHHHHHHHHHHhCccccCCCCeEEeCCCC-CCcCHHHHHHHHHH
Confidence 4456655444444433 3342 223222222222 247899998862 47999999999999
Q ss_pred HhhcCC
Q psy11859 507 LIYQYP 512 (851)
Q Consensus 507 ~~~~~p 512 (851)
.++..|
T Consensus 270 ~~~~~~ 275 (347)
T PRK11908 270 LAAEYP 275 (347)
T ss_pred HhcCcc
Confidence 988654
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-27 Score=260.81 Aligned_cols=238 Identities=23% Similarity=0.287 Sum_probs=173.5
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
++|||||||||||++|+++|++.|.+ .|.++.|..... ....+.. . ....+++++.+|++|++
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~--~v~~~~~~~~~~-~~~~~~~------------~--~~~~~~~~~~~Dl~d~~ 64 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSD--AVVVVDKLTYAG-NLMSLAP------------V--AQSERFAFEKVDICDRA 64 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCC--EEEEEecCcccc-chhhhhh------------c--ccCCceEEEECCCcChH
Confidence 58999999999999999999998842 244444432211 0111100 0 01136889999999886
Q ss_pred CCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhc--------CCceEEEEeeeeeee
Q psy11859 299 LGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKM--------KKLVAFIHFSTAFCH 365 (851)
Q Consensus 299 lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~--------~~~~~fV~vSTa~~~ 365 (851)
++..+++ ++|+|||+||..... +.+.+.+++|+.||.+|+++|.+. +++++||++||..+|
T Consensus 65 ------~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vy 138 (355)
T PRK10217 65 ------ELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVY 138 (355)
T ss_pred ------HHHHHHhhcCCCEEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhc
Confidence 7777776 499999999987653 345788999999999999999863 247899999998888
Q ss_pred CCC----cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEeccc
Q psy11859 366 PDQ----KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSI 439 (851)
Q Consensus 366 ~~~----~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~ 439 (851)
+.. .+++|+.+..|.++ |+.||+.+|.++..++. +++++++||++
T Consensus 139 g~~~~~~~~~~E~~~~~p~s~-----------------------------Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~ 189 (355)
T PRK10217 139 GDLHSTDDFFTETTPYAPSSP-----------------------------YSASKASSDHLVRAWLRTYGLPTLITNCSN 189 (355)
T ss_pred CCCCCCCCCcCCCCCCCCCCh-----------------------------hHHHHHHHHHHHHHHHHHhCCCeEEEeeee
Confidence 742 25777765556555 99999999999988754 89999999999
Q ss_pred ccCCCCCC---chhHhhhhc-CCceEEEEccc---------CceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHH
Q psy11859 440 VLPSFQEP---VPGWVDSLN-GPVGVLVASGK---------GVVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGK 505 (851)
Q Consensus 440 V~G~~~~p---~p~~i~~~~-~~~~~~~~~g~---------~v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~ 505 (851)
||||++.+ +|.++.... +....+++.|. |+++++....+ ...+++||++++ +++|+.|+++.+.
T Consensus 190 v~Gp~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~yni~~~--~~~s~~~~~~~i~ 267 (355)
T PRK10217 190 NYGPYHFPEKLIPLMILNALAGKPLPVYGNGQQIRDWLYVEDHARALYCVATTGKVGETYNIGGH--NERKNLDVVETIC 267 (355)
T ss_pred eeCCCCCcccHHHHHHHHHhcCCCceEeCCCCeeeCcCcHHHHHHHHHHHHhcCCCCCeEEeCCC--CcccHHHHHHHHH
Confidence 99999743 566666543 44334455553 33333332222 334689999999 7899999999999
Q ss_pred HHhhc
Q psy11859 506 QLIYQ 510 (851)
Q Consensus 506 ~~~~~ 510 (851)
+.++.
T Consensus 268 ~~~~~ 272 (355)
T PRK10217 268 ELLEE 272 (355)
T ss_pred HHhcc
Confidence 98875
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=262.32 Aligned_cols=235 Identities=21% Similarity=0.252 Sum_probs=170.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
.++|+|||||||||||++|++.|++.| .+|++++|...+. .+.+...+ ...+++++.+|+.
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G---~~V~~ld~~~~~~--~~~~~~~~--------------~~~~~~~i~~D~~ 177 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARG---DSVIVVDNFFTGR--KENVMHHF--------------SNPNFELIRHDVV 177 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCc---CEEEEEeCCCccc--hhhhhhhc--------------cCCceEEEECCcc
Confidence 467999999999999999999999998 6788888754321 11111100 1236889999998
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCc---chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--c
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKL---EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--V 370 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~---~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~ 370 (851)
++. +.++|+|||+||.... ..++.+.+++|+.||.+|+++|++.+ + +|||+||.++|++.. +
T Consensus 178 ~~~-----------l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g-~-r~V~~SS~~VYg~~~~~p 244 (442)
T PLN02206 178 EPI-----------LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPLQHP 244 (442)
T ss_pred Chh-----------hcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC-C-EEEEECChHHhCCCCCCC
Confidence 763 2479999999997643 23567889999999999999999986 5 899999998887543 4
Q ss_pred cccccC--CCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCC
Q psy11859 371 LEEKLY--PSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 371 i~E~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~ 446 (851)
..|+.+ ..|.++ .+.|+.||.++|.++..+.. +++++++||++||||+..
T Consensus 245 ~~E~~~~~~~P~~~--------------------------~s~Y~~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~ 298 (442)
T PLN02206 245 QVETYWGNVNPIGV--------------------------RSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMC 298 (442)
T ss_pred CCccccccCCCCCc--------------------------cchHHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCC
Confidence 555532 122222 25699999999999988754 899999999999999742
Q ss_pred -----CchhHhhhh-cCCceEEEEccc---------CceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 447 -----PVPGWVDSL-NGPVGVLVASGK---------GVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 447 -----p~p~~i~~~-~~~~~~~~~~g~---------~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
.++.++..+ .+....+++.|. |+++++....+...+++||++++ +++|+.|+++.+.+..+.
T Consensus 299 ~~~~~~v~~~i~~~l~~~~i~i~g~G~~~rdfi~V~Dva~ai~~a~e~~~~g~yNIgs~--~~~sl~Elae~i~~~~g~ 375 (442)
T PLN02206 299 IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNP--GEFTMLELAKVVQETIDP 375 (442)
T ss_pred ccccchHHHHHHHHHcCCCcEEeCCCCEEEeEEeHHHHHHHHHHHHhcCCCceEEEcCC--CceeHHHHHHHHHHHhCC
Confidence 256777764 444334444442 23333322222344569999998 689999999999998874
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=258.74 Aligned_cols=232 Identities=19% Similarity=0.169 Sum_probs=169.7
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++|+|||||||||||++|++.|++.| ++|.+++|....... .....++++.+|+++
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G---~~V~~v~r~~~~~~~---------------------~~~~~~~~~~~Dl~d 75 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEG---HYIIASDWKKNEHMS---------------------EDMFCHEFHLVDLRV 75 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCC---CEEEEEEeccccccc---------------------cccccceEEECCCCC
Confidence 67899999999999999999999988 688999886432100 001135688999998
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCc----chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc---
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKL----EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--- 369 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~----~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--- 369 (851)
.+ .+..+++++|+|||+||.+.. ...+...+..|+.||.+|+++|++.+ +++|||+||..+|+...
T Consensus 76 ~~------~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~-vk~~V~~SS~~vYg~~~~~~ 148 (370)
T PLN02695 76 ME------NCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARING-VKRFFYASSACIYPEFKQLE 148 (370)
T ss_pred HH------HHHHHHhCCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhC-CCEEEEeCchhhcCCccccC
Confidence 75 677777899999999997631 12344567899999999999999885 89999999998888643
Q ss_pred ---cccccc--CCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccC
Q psy11859 370 ---VLEEKL--YPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLP 442 (851)
Q Consensus 370 ---~i~E~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G 442 (851)
++.|+. +..|. +.|+.+|..+|+++..+.. +++++|+||++|||
T Consensus 149 ~~~~~~E~~~~p~~p~-----------------------------s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyG 199 (370)
T PLN02695 149 TNVSLKESDAWPAEPQ-----------------------------DAYGLEKLATEELCKHYTKDFGIECRIGRFHNIYG 199 (370)
T ss_pred cCCCcCcccCCCCCCC-----------------------------CHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCccC
Confidence 233432 22233 4599999999999988754 99999999999999
Q ss_pred CCCCC-------chhHhhhh-cCCceE-EEEccc---------CceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHH
Q psy11859 443 SFQEP-------VPGWVDSL-NGPVGV-LVASGK---------GVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRG 504 (851)
Q Consensus 443 ~~~~p-------~p~~i~~~-~~~~~~-~~~~g~---------~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~ 504 (851)
|++.. .+.|+..+ .++.++ +++.|. |+++++....+...+++||++++ .++|+.|+++.+
T Consensus 200 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~a~ai~~~~~~~~~~~~nv~~~--~~~s~~el~~~i 277 (370)
T PLN02695 200 PFGTWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECVEGVLRLTKSDFREPVNIGSD--EMVSMNEMAEIA 277 (370)
T ss_pred CCCCccccccccHHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHHHHHHHHHHHhccCCCceEecCC--CceeHHHHHHHH
Confidence 97531 34566653 332333 334443 33333322222334679999998 689999999999
Q ss_pred HHHhhc
Q psy11859 505 KQLIYQ 510 (851)
Q Consensus 505 ~~~~~~ 510 (851)
.+..+.
T Consensus 278 ~~~~g~ 283 (370)
T PLN02695 278 LSFENK 283 (370)
T ss_pred HHHhCC
Confidence 988875
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=276.89 Aligned_cols=249 Identities=20% Similarity=0.212 Sum_probs=181.2
Q ss_pred chhhhcCCCEEEEecCccHHHHHHHHHHHHh-CCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEE
Q psy11859 211 DVARWYAGRSVLVTGGTGFMGKVLLEKLLRS-CPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHI 289 (851)
Q Consensus 211 ~i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~-g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~ 289 (851)
+...+.++|+|||||||||||++|+++|++. + ++|++++|..... .++ . ..+++++
T Consensus 308 ~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g---~~V~~l~r~~~~~---~~~---~--------------~~~~~~~ 364 (660)
T PRK08125 308 PACSAKRRTRVLILGVNGFIGNHLTERLLRDDN---YEVYGLDIGSDAI---SRF---L--------------GHPRFHF 364 (660)
T ss_pred chhhhhcCCEEEEECCCchHHHHHHHHHHhCCC---cEEEEEeCCchhh---hhh---c--------------CCCceEE
Confidence 4556788999999999999999999999985 4 6899999865321 000 0 1136889
Q ss_pred EEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCc---chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeC
Q psy11859 290 IEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKL---EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHP 366 (851)
Q Consensus 290 v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~---~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~ 366 (851)
+.||++|+. ..+..+++++|+|||+||.... ..++.+.+++|+.||.+++++|++.+ ++|||+||+++||
T Consensus 365 ~~gDl~d~~-----~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~--~~~V~~SS~~vyg 437 (660)
T PRK08125 365 VEGDISIHS-----EWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN--KRIIFPSTSEVYG 437 (660)
T ss_pred EeccccCcH-----HHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC--CeEEEEcchhhcC
Confidence 999999864 1245677899999999997654 34556789999999999999999985 7999999999988
Q ss_pred CC--cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccC
Q psy11859 367 DQ--KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLP 442 (851)
Q Consensus 367 ~~--~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G 442 (851)
.. .+++|+.+..+..| .....+.|+.||+++|+++..++. +++++++||++|||
T Consensus 438 ~~~~~~~~E~~~~~~~~p----------------------~~~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyG 495 (660)
T PRK08125 438 MCTDKYFDEDTSNLIVGP----------------------INKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMG 495 (660)
T ss_pred CCCCCCcCccccccccCC----------------------CCCCccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeC
Confidence 53 35677654321111 000124699999999999998864 89999999999999
Q ss_pred CCCC-----------CchhHhhhhcCCceE-EEEccc---------CceeEEEeecCC----CCccEEEEeCCCCccccH
Q psy11859 443 SFQE-----------PVPGWVDSLNGPVGV-LVASGK---------GVVRSMILNDLS----TETQVFNISSNEVEAITW 497 (851)
Q Consensus 443 ~~~~-----------p~p~~i~~~~~~~~~-~~~~g~---------~v~~~~~~~~~~----~~~~iyni~~~~~~~~t~ 497 (851)
|++. .++.++..+..+.++ +.+.|. |+++++..+.+. ..+++||+++++ +++|+
T Consensus 496 p~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i~v~Dva~a~~~~l~~~~~~~~g~iyni~~~~-~~~s~ 574 (660)
T PRK08125 496 PRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFTDIRDGIEALFRIIENKDNRCDGQIINIGNPD-NEASI 574 (660)
T ss_pred CCccccccccccccchHHHHHHHhcCCCCeEEeCCCceeeceeeHHHHHHHHHHHHhccccccCCeEEEcCCCC-CceeH
Confidence 9753 267777775544444 344442 233333222222 246899999873 36999
Q ss_pred HHHHHHHHHHhhcCC
Q psy11859 498 GEIISRGKQLIYQYP 512 (851)
Q Consensus 498 ~el~~~~~~~~~~~p 512 (851)
+|+++.+.+.++..+
T Consensus 575 ~el~~~i~~~~g~~~ 589 (660)
T PRK08125 575 RELAEMLLASFEKHP 589 (660)
T ss_pred HHHHHHHHHHhccCc
Confidence 999999999988543
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=256.28 Aligned_cols=243 Identities=19% Similarity=0.241 Sum_probs=172.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
.++|+|||||||||||++|+++|++.| ++|.+++|....... ..+.. + .....+++++.+|++
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~r~~~~~~~-~~~~~---------~----~~~~~~~~~~~~Dl~ 70 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERG---YTVKGTVRNPDDPKN-THLRE---------L----EGGKERLILCKADLQ 70 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCc---CEEEEEeCCchhhhH-HHHHH---------h----hCCCCcEEEEecCcC
Confidence 367899999999999999999999998 688999886542110 00111 1 011236889999999
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeee-eeeCCCc-----
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTA-FCHPDQK----- 369 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa-~~~~~~~----- 369 (851)
+++ ++..+++++|+|||+||... ..+.+.+++|+.||.+++++|++.+ +++|||+||+ .+|+...
T Consensus 71 d~~------~~~~~~~~~d~Vih~A~~~~--~~~~~~~~~nv~gt~~ll~aa~~~~-v~r~V~~SS~~avyg~~~~~~~~ 141 (342)
T PLN02214 71 DYE------ALKAAIDGCDGVFHTASPVT--DDPEQMVEPAVNGAKFVINAAAEAK-VKRVVITSSIGAVYMDPNRDPEA 141 (342)
T ss_pred ChH------HHHHHHhcCCEEEEecCCCC--CCHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEeccceeeeccCCCCCCc
Confidence 886 78888899999999999753 4567889999999999999999885 8999999995 4665321
Q ss_pred ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC
Q psy11859 370 VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP 447 (851)
Q Consensus 370 ~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p 447 (851)
+++|+.+.. .+. .....+.|+.||+++|+++..+.. +++++++||++||||+..+
T Consensus 142 ~~~E~~~~~-~~~----------------------~~~p~~~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~ 198 (342)
T PLN02214 142 VVDESCWSD-LDF----------------------CKNTKNWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQP 198 (342)
T ss_pred ccCcccCCC-hhh----------------------ccccccHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCC
Confidence 356654211 100 001135699999999999988754 9999999999999998654
Q ss_pred -----chhHhhhhcCCceE------EEEcccCceeEEEeecCC-CCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 448 -----VPGWVDSLNGPVGV------LVASGKGVVRSMILNDLS-TETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 448 -----~p~~i~~~~~~~~~------~~~~g~~v~~~~~~~~~~-~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
+..++..+.+.... -+.+.+|+++++..+.+. ..+++||++++ ++++.|+++.+.+.++.
T Consensus 199 ~~~~~~~~~~~~~~g~~~~~~~~~~~~i~V~Dva~a~~~al~~~~~~g~yn~~~~---~~~~~el~~~i~~~~~~ 270 (342)
T PLN02214 199 TINASLYHVLKYLTGSAKTYANLTQAYVDVRDVALAHVLVYEAPSASGRYLLAES---ARHRGEVVEILAKLFPE 270 (342)
T ss_pred CCCchHHHHHHHHcCCcccCCCCCcCeeEHHHHHHHHHHHHhCcccCCcEEEecC---CCCHHHHHHHHHHHCCC
Confidence 22223323333221 112234555555554443 34569999764 57999999999998753
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=254.83 Aligned_cols=246 Identities=17% Similarity=0.233 Sum_probs=172.0
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
.|++|||||||||||++|+++|++.| .+|++++|..... +.+..+.. .. ....+++++.+|+++
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~---~~~~~~~~---------~~-~~~~~~~~~~~Dl~~ 67 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRG---YTVKATVRDLTDR---KKTEHLLA---------LD-GAKERLKLFKADLLE 67 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEECCCcch---HHHHHHHh---------cc-CCCCceEEEecCCCC
Confidence 47899999999999999999999998 6888888865432 12211110 00 112478999999999
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcc--hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeee--CCC----
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLE--AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCH--PDQ---- 368 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~--~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~--~~~---- 368 (851)
++ .+..+++++|+|||+||..... ++..+.+++|+.||.+|+++|++.+++++||++||+.++ +..
T Consensus 68 ~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~ 141 (322)
T PLN02986 68 ES------SFEQAIEGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEA 141 (322)
T ss_pred cc------hHHHHHhCCCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCC
Confidence 87 7888889999999999976542 333457899999999999999886558999999997543 321
Q ss_pred -cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCC
Q psy11859 369 -KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 369 -~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~ 445 (851)
..++|+.+..|..+ ....+.|+.||.++|.+++.+.+ +++++++||++||||..
T Consensus 142 ~~~~~E~~~~~p~~~-----------------------~~~~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~ 198 (322)
T PLN02986 142 NDVVDETFFSDPSLC-----------------------RETKNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLL 198 (322)
T ss_pred CCCcCcccCCChHHh-----------------------hccccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCC
Confidence 13455443322100 01135699999999999998764 89999999999999986
Q ss_pred CC----chhHhhhhcCCceE------EEEcccCceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 446 EP----VPGWVDSLNGPVGV------LVASGKGVVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 446 ~p----~p~~i~~~~~~~~~------~~~~g~~v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
.+ .+.++..+..+.+. .+.+.+|+++++..+.+ +..+++||++ + .++|+.|+++.+.+.++.
T Consensus 199 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~Dva~a~~~al~~~~~~~~yni~-~--~~~s~~e~~~~i~~~~~~ 271 (322)
T PLN02986 199 QPTLNFSVELIVDFINGKNLFNNRFYRFVDVRDVALAHIKALETPSANGRYIID-G--PIMSVNDIIDILRELFPD 271 (322)
T ss_pred CCCCCccHHHHHHHHcCCCCCCCcCcceeEHHHHHHHHHHHhcCcccCCcEEEe-c--CCCCHHHHHHHHHHHCCC
Confidence 54 23334332222221 12223455555544333 2334689994 5 469999999999998764
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=252.49 Aligned_cols=246 Identities=17% Similarity=0.258 Sum_probs=173.0
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++|+|||||||||||++|+++|++.| .+|.+++|..........+ ... +...++++++.+|+++
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~------------~~~-~~~~~~~~~~~~Dl~~ 66 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRG---YTVKATVRDPNDPKKTEHL------------LAL-DGAKERLHLFKANLLE 66 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCC---CEEEEEEcCCCchhhHHHH------------Hhc-cCCCCceEEEeccccC
Confidence 46899999999999999999999998 6888888865431111111 000 1112478999999999
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcc-hhH-HHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeee--eeCCC----
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLE-AEL-KENVAANTRGTQRLLDIALKMKKLVAFIHFSTAF--CHPDQ---- 368 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~-~~~-~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~--~~~~~---- 368 (851)
++ .+..+++++|+|||+||..... ..+ ...+++|+.||.+++++|.+..++++||++||+. +|+..
T Consensus 67 ~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~ 140 (322)
T PLN02662 67 EG------SFDSVVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTP 140 (322)
T ss_pred cc------hHHHHHcCCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCC
Confidence 87 7888889999999999976432 233 4788999999999999998874589999999964 35432
Q ss_pred -cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCC
Q psy11859 369 -KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 369 -~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~ 445 (851)
.+++|+.+..|..+ ...++.|+.||.++|+++..+.+ +++++++||++||||..
T Consensus 141 ~~~~~E~~~~~p~~~-----------------------~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~ 197 (322)
T PLN02662 141 DVVVDETWFSDPAFC-----------------------EESKLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLL 197 (322)
T ss_pred CCcCCcccCCChhHh-----------------------hcccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCC
Confidence 13556543333211 11124699999999999988754 89999999999999986
Q ss_pred CC----chhHhhhh-cCCc-----eEEEEcccCceeEEEeecCC-CCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 446 EP----VPGWVDSL-NGPV-----GVLVASGKGVVRSMILNDLS-TETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 446 ~p----~p~~i~~~-~~~~-----~~~~~~g~~v~~~~~~~~~~-~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
.+ .+.++..+ .+.. ..-+...+|+++++..+.+. ..+++||++ | .++++.|+++.+.+..+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~-g--~~~s~~e~~~~i~~~~~~ 270 (322)
T PLN02662 198 QPTLNTSAEAILNLINGAQTFPNASYRWVDVRDVANAHIQAFEIPSASGRYCLV-E--RVVHYSEVVKILHELYPT 270 (322)
T ss_pred CCCCCchHHHHHHHhcCCccCCCCCcCeEEHHHHHHHHHHHhcCcCcCCcEEEe-C--CCCCHHHHHHHHHHHCCC
Confidence 43 34444432 2211 11223345666665554442 234588886 5 469999999999998664
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=256.33 Aligned_cols=243 Identities=20% Similarity=0.161 Sum_probs=174.2
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|++.| .+|++++|...... .+++..+... + .+....+++++.||++|.+
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~r~~~~~~-~~~~~~~~~~-----~---~~~~~~~~~~~~~Dl~d~~ 68 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKG---YEVHGLIRRSSSFN-TQRIEHIYED-----P---HNVNKARMKLHYGDLTDSS 68 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCC---CEEEEEecCCcccc-hhhhhhhhhc-----c---ccccccceeEEEeccCCHH
Confidence 589999999999999999999998 68899998754211 1222211100 0 0011236899999999886
Q ss_pred CCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCC--ceEEEEeeeeeeeCCCc--
Q psy11859 299 LGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKK--LVAFIHFSTAFCHPDQK-- 369 (851)
Q Consensus 299 lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~--~~~fV~vSTa~~~~~~~-- 369 (851)
.+..+++ ++|+|||+||..+.. ..+...+++|+.||.+|+++|.+.+- .++|||+||..+||...
T Consensus 69 ------~l~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~ 142 (343)
T TIGR01472 69 ------NLRRIIDEIKPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEI 142 (343)
T ss_pred ------HHHHHHHhCCCCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCC
Confidence 7777776 479999999986543 23456778999999999999998751 24899999998888543
Q ss_pred ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC
Q psy11859 370 VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP 447 (851)
Q Consensus 370 ~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p 447 (851)
+++|+.+..|.++ |+.||..+|.++..++. ++++++.|+.++|||+...
T Consensus 143 ~~~E~~~~~p~~~-----------------------------Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~ 193 (343)
T TIGR01472 143 PQNETTPFYPRSP-----------------------------YAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRRGE 193 (343)
T ss_pred CCCCCCCCCCCCh-----------------------------hHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCc
Confidence 5677766556555 99999999999988865 8999999999999996421
Q ss_pred --c----hhHhhhhc-CCc-eEEEEccc---------CceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 448 --V----PGWVDSLN-GPV-GVLVASGK---------GVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 448 --~----p~~i~~~~-~~~-~~~~~~g~---------~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
+ +.++..+. +.. .+.++.|. |+++++....+...+++||+++| .++|+.|+++.+.+..+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~V~D~a~a~~~~~~~~~~~~yni~~g--~~~s~~e~~~~i~~~~g~ 271 (343)
T TIGR01472 194 NFVTRKITRAAAKIKLGLQEKLYLGNLDAKRDWGHAKDYVEAMWLMLQQDKPDDYVIATG--ETHSVREFVEVSFEYIGK 271 (343)
T ss_pred cccchHHHHHHHHHHcCCCCceeeCCCccccCceeHHHHHHHHHHHHhcCCCccEEecCC--CceeHHHHHHHHHHHcCC
Confidence 2 23333433 332 33445453 33333333222333469999999 789999999999998884
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >KOG1371|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.2e-26 Score=234.24 Aligned_cols=243 Identities=22% Similarity=0.235 Sum_probs=181.5
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+++||||||+||||+|.+-+|++.|.+|-.|.-|+|+. .....|++.+.. + ..+|.++++||+|.
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~--~~sl~r~~~l~~------------~-~~~v~f~~~Dl~D~ 66 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSY--LESLKRVRQLLG------------E-GKSVFFVEGDLNDA 66 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccc--hhHHHHHHHhcC------------C-CCceEEEEeccCCH
Confidence 67999999999999999999999996555555555544 223455544332 1 35899999999998
Q ss_pred cCCCCHHHHHHHhc--CccEEEEccccCCcchh---HHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--c
Q psy11859 298 NLGIKDSDLLMLQE--EVSVVFNGAASLKLEAE---LKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--V 370 (851)
Q Consensus 298 ~lgls~~~~~~~~~--~vd~ViH~AA~~~~~~~---~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~ 370 (851)
. .++++++ +.|.|+|+||...+.++ |..++.+|+.||.+||+++++.+ ++.+|++||+.+||... |
T Consensus 67 ~------~L~kvF~~~~fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~-~~~~V~sssatvYG~p~~ip 139 (343)
T KOG1371|consen 67 E------ALEKLFSEVKFDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN-VKALVFSSSATVYGLPTKVP 139 (343)
T ss_pred H------HHHHHHhhcCCceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC-CceEEEecceeeecCcceee
Confidence 6 7888876 68999999999887654 45789999999999999999997 99999999999999775 7
Q ss_pred cccccCCC-CCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccC--CCC
Q psy11859 371 LEEKLYPS-PVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLP--SFQ 445 (851)
Q Consensus 371 i~E~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G--~~~ 445 (851)
+.|+.+.. |.+| ||.||...|.++..+.. ++.++++|.++++| |++
T Consensus 140 ~te~~~t~~p~~p-----------------------------yg~tK~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~p~G 190 (343)
T KOG1371|consen 140 ITEEDPTDQPTNP-----------------------------YGKTKKAIEEIIHDYNKAYGWKVTGLRYFNVIGAHPSG 190 (343)
T ss_pred ccCcCCCCCCCCc-----------------------------chhhhHHHHHHHHhhhccccceEEEEEeccccCccccC
Confidence 88887666 6666 99999999999999876 88999999999999 554
Q ss_pred CC---chh-------Hhhh-hcCC--------ceEEEEcccCceeEEEeecC--------------CCCccEEEEeCCCC
Q psy11859 446 EP---VPG-------WVDS-LNGP--------VGVLVASGKGVVRSMILNDL--------------STETQVFNISSNEV 492 (851)
Q Consensus 446 ~p---~p~-------~i~~-~~~~--------~~~~~~~g~~v~~~~~~~~~--------------~~~~~iyni~~~~~ 492 (851)
.+ .++ .+.+ .-+. .+....+| +.+|..+...+ ....+|||++++
T Consensus 191 r~ge~p~~~~nnl~p~v~~vaigr~~~l~v~g~d~~t~dg-t~vrdyi~v~Dla~~h~~al~k~~~~~~~~i~Nlgtg-- 267 (343)
T KOG1371|consen 191 RIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRDYTTIDG-TIVRDYIHVLDLADGHVAALGKLRGAAEFGVYNLGTG-- 267 (343)
T ss_pred ccCCCCccCcccccccccchhhcccccceeecCcccccCC-CeeecceeeEehHHHHHHHhhccccchheeeEeecCC--
Confidence 32 111 2222 1121 12222222 33443333222 134459999999
Q ss_pred ccccHHHHHHHHHHHhhc-CCCC
Q psy11859 493 EAITWGEIISRGKQLIYQ-YPLE 514 (851)
Q Consensus 493 ~~~t~~el~~~~~~~~~~-~p~~ 514 (851)
.+.+..+++..+.+..|. .|..
T Consensus 268 ~g~~V~~lv~a~~k~~g~~~k~~ 290 (343)
T KOG1371|consen 268 KGSSVLELVTAFEKALGVKIKKK 290 (343)
T ss_pred CCccHHHHHHHHHHHhcCCCCcc
Confidence 789999999999999885 4433
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-26 Score=251.96 Aligned_cols=246 Identities=16% Similarity=0.250 Sum_probs=174.4
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
.+|+||||||+||||++|+++|++.| .+|++++|...... ....+. .. .....+++++.+|+++
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G---~~V~~~~r~~~~~~---~~~~~~---------~~-~~~~~~~~~~~~D~~d 67 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRG---YTINATVRDPKDRK---KTDHLL---------AL-DGAKERLKLFKADLLD 67 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC---CEEEEEEcCCcchh---hHHHHH---------hc-cCCCCceEEEeCCCCC
Confidence 47899999999999999999999998 67888887754321 111110 00 0112478899999999
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC-----
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ----- 368 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~----- 368 (851)
++ ++..+++++|+|||+||..... +.+.+.+++|+.||.+++++|.+...+++||++||..+++..
T Consensus 68 ~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~ 141 (325)
T PLN02989 68 EG------SFELAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLG 141 (325)
T ss_pred ch------HHHHHHcCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCC
Confidence 87 7888888999999999975432 345678999999999999999886447899999997665321
Q ss_pred --cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCC
Q psy11859 369 --KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSF 444 (851)
Q Consensus 369 --~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~ 444 (851)
.+++|+.+..|..+ ....+.|+.||.++|+++..+.+ +++++++||++||||+
T Consensus 142 ~~~~~~E~~~~~p~~~-----------------------~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~ 198 (325)
T PLN02989 142 PNDVVDETFFTNPSFA-----------------------EERKQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPI 198 (325)
T ss_pred CCCccCcCCCCchhHh-----------------------cccccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCC
Confidence 24566654444321 00125699999999999988754 8999999999999998
Q ss_pred CCC----chhHhhhh-cCCceEE-----EEcccCceeEEEeecCC-CCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 445 QEP----VPGWVDSL-NGPVGVL-----VASGKGVVRSMILNDLS-TETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 445 ~~p----~p~~i~~~-~~~~~~~-----~~~g~~v~~~~~~~~~~-~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
..+ ++.++..+ .+..+.. +.+.+|+++++....+. ..+++||++ + .++|++|+++.+.+.++.
T Consensus 199 ~~~~~~~~~~~i~~~~~~~~~~~~~~r~~i~v~Dva~a~~~~l~~~~~~~~~ni~-~--~~~s~~ei~~~i~~~~~~ 272 (325)
T PLN02989 199 LQPTLNFSVAVIVELMKGKNPFNTTHHRFVDVRDVALAHVKALETPSANGRYIID-G--PVVTIKDIENVLREFFPD 272 (325)
T ss_pred CCCCCCchHHHHHHHHcCCCCCCCcCcCeeEHHHHHHHHHHHhcCcccCceEEEe-c--CCCCHHHHHHHHHHHCCC
Confidence 764 23444443 3333221 12224555555544332 235699994 5 369999999999998763
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=243.78 Aligned_cols=239 Identities=25% Similarity=0.306 Sum_probs=173.0
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcC
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANL 299 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~l 299 (851)
+|||||||||||++|+++|++.+++ .+|++++|..... ..+++..+. ..++++++.+|+++++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~-~~v~~~~~~~~~~-~~~~~~~~~--------------~~~~~~~~~~Dl~~~~- 63 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPD-AEVIVLDKLTYAG-NLENLADLE--------------DNPRYRFVKGDIGDRE- 63 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCC-CEEEEecCCCcch-hhhhhhhhc--------------cCCCcEEEEcCCcCHH-
Confidence 5899999999999999999998743 4778887643211 111111110 1136889999999987
Q ss_pred CCCHHHHHHHhcC--ccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc---cc
Q psy11859 300 GIKDSDLLMLQEE--VSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK---VL 371 (851)
Q Consensus 300 gls~~~~~~~~~~--vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~---~i 371 (851)
++..++++ +|+|||+||....+ +.+..++++|+.|+.+++++|.+...-.++|++||.++++... ++
T Consensus 64 -----~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~ 138 (317)
T TIGR01181 64 -----LVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAF 138 (317)
T ss_pred -----HHHHHHhhcCCCEEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCc
Confidence 77777776 99999999987643 3456789999999999999998864223799999998887543 45
Q ss_pred ccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC--
Q psy11859 372 EEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP-- 447 (851)
Q Consensus 372 ~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p-- 447 (851)
.|..+..|.+ .|+.+|+.+|.++..+.. +++++++||++||||...+
T Consensus 139 ~e~~~~~~~~-----------------------------~Y~~sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~~~ 189 (317)
T TIGR01181 139 TETTPLAPSS-----------------------------PYSASKAASDHLVRAYHRTYGLPALITRCSNNYGPYQFPEK 189 (317)
T ss_pred CCCCCCCCCC-----------------------------chHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCccc
Confidence 5655444443 499999999999988754 8999999999999997643
Q ss_pred -chhHhhhhcCCc-eEEEEcccCc---------eeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHHHHhhcC
Q psy11859 448 -VPGWVDSLNGPV-GVLVASGKGV---------VRSMILNDL-STETQVFNISSNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 448 -~p~~i~~~~~~~-~~~~~~g~~v---------~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
+|.++.++..+. ..+++.|... ++++....+ ...+++||++++ .++++.|+++.+.+.++..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~i~~~~~~~ 263 (317)
T TIGR01181 190 LIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYLVLEKGRVGETYNIGGG--NERTNLEVVETILELLGKD 263 (317)
T ss_pred HHHHHHHHHhcCCCceEeCCCceEEeeEEHHHHHHHHHHHHcCCCCCceEEeCCC--CceeHHHHHHHHHHHhCCC
Confidence 566666644333 3344544332 222221111 335689999998 6899999999999998853
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=248.50 Aligned_cols=249 Identities=19% Similarity=0.246 Sum_probs=167.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++|||||||||||++|+++|++.| .+|.+++|..........+.. + + ..++++++.+|++
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~---------~----~-~~~~~~~~~~Dl~ 69 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKG---YAVNTTVRDPENQKKIAHLRA---------L----Q-ELGDLKIFGADLT 69 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCC---CEEEEEECCCCCHHHHHHHHh---------c----C-CCCceEEEEcCCC
Confidence 457899999999999999999999998 678888887543111100000 0 0 1136889999999
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCcc-hhH-HHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC-----
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKLE-AEL-KENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ----- 368 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~-~~~-~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~----- 368 (851)
|++ ++..+++++|+|||+||..... .++ ...+++|+.|+.+|+++|.+.+++++||++||+.+++..
T Consensus 70 d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~ 143 (338)
T PLN00198 70 DEE------SFEAPIAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGT 143 (338)
T ss_pred ChH------HHHHHHhcCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCC
Confidence 986 7788888999999999976543 233 456899999999999999887558999999999887742
Q ss_pred -cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCC
Q psy11859 369 -KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 369 -~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~ 445 (851)
.+++|+.... ... ++.. ....+.|+.||+++|.++..+.. +++++++||++||||++
T Consensus 144 ~~~~~E~~~~~-~~~--------------~~~~-----~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~ 203 (338)
T PLN00198 144 GLVMNEKNWTD-VEF--------------LTSE-----KPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSL 203 (338)
T ss_pred CceeccccCCc-hhh--------------hhhc-----CCccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCc
Confidence 2345542110 000 0000 01134599999999999998765 89999999999999986
Q ss_pred CC-chhHh---hh-hcCCceEE--------------EEcccCceeEEEeecCC-CCccEEEEeCCCCccccHHHHHHHHH
Q psy11859 446 EP-VPGWV---DS-LNGPVGVL--------------VASGKGVVRSMILNDLS-TETQVFNISSNEVEAITWGEIISRGK 505 (851)
Q Consensus 446 ~p-~p~~i---~~-~~~~~~~~--------------~~~g~~v~~~~~~~~~~-~~~~iyni~~~~~~~~t~~el~~~~~ 505 (851)
.+ +|.++ .. +.+....+ +...+|++++++...+. ..+++|+ +++ .++++.|+++.+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~V~D~a~a~~~~~~~~~~~~~~~-~~~--~~~s~~el~~~i~ 280 (338)
T PLN00198 204 TSDIPSSLSLAMSLITGNEFLINGLKGMQMLSGSISITHVEDVCRAHIFLAEKESASGRYI-CCA--ANTSVPELAKFLI 280 (338)
T ss_pred cCCCCCcHHHHHHHHcCCccccccccccccccCCcceeEHHHHHHHHHHHhhCcCcCCcEE-Eec--CCCCHHHHHHHHH
Confidence 43 33322 11 22221111 12223444444333322 2345784 555 4689999999999
Q ss_pred HHhhc
Q psy11859 506 QLIYQ 510 (851)
Q Consensus 506 ~~~~~ 510 (851)
+..+.
T Consensus 281 ~~~~~ 285 (338)
T PLN00198 281 KRYPQ 285 (338)
T ss_pred HHCCC
Confidence 87653
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=250.72 Aligned_cols=238 Identities=19% Similarity=0.238 Sum_probs=169.2
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|++.|. ..|+++.+..... ..+.+..+ .+ ..+++++.+|++|.+
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~--~~v~~~~~~~~~~-~~~~~~~~------------~~--~~~~~~~~~Dl~d~~ 63 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQ--DSVVNVDKLTYAG-NLESLADV------------SD--SERYVFEHADICDRA 63 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCC--CeEEEecCCCccc-hHHHHHhc------------cc--CCceEEEEecCCCHH
Confidence 5799999999999999999999874 2355555432111 11111110 00 136788999999886
Q ss_pred CCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhc--------CCceEEEEeeeeeee
Q psy11859 299 LGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKM--------KKLVAFIHFSTAFCH 365 (851)
Q Consensus 299 lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~--------~~~~~fV~vSTa~~~ 365 (851)
++..+++ ++|+|||+||..+.. .++.+.+++|+.||.+++++|++. +++++|||+||.+++
T Consensus 64 ------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vy 137 (352)
T PRK10084 64 ------ELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVY 137 (352)
T ss_pred ------HHHHHHHhcCCCEEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhc
Confidence 7777765 589999999986542 345788999999999999999874 246799999998888
Q ss_pred CCCc------------ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCC
Q psy11859 366 PDQK------------VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLP 431 (851)
Q Consensus 366 ~~~~------------~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~ 431 (851)
+... +++|+.+..|. +.|+.||+.+|+++..++. +++
T Consensus 138 g~~~~~~~~~~~~~~~~~~E~~~~~p~-----------------------------~~Y~~sK~~~E~~~~~~~~~~g~~ 188 (352)
T PRK10084 138 GDLPHPDEVENSEELPLFTETTAYAPS-----------------------------SPYSASKASSDHLVRAWLRTYGLP 188 (352)
T ss_pred CCCCccccccccccCCCccccCCCCCC-----------------------------ChhHHHHHHHHHHHHHHHHHhCCC
Confidence 7531 23344333333 4599999999999988754 899
Q ss_pred EEEEecccccCCCCCC---chhHhhhhcCCce-EEEEccc---------CceeEEEeecC-CCCccEEEEeCCCCccccH
Q psy11859 432 VVIVRPSIVLPSFQEP---VPGWVDSLNGPVG-VLVASGK---------GVVRSMILNDL-STETQVFNISSNEVEAITW 497 (851)
Q Consensus 432 ~~ivRp~~V~G~~~~p---~p~~i~~~~~~~~-~~~~~g~---------~v~~~~~~~~~-~~~~~iyni~~~~~~~~t~ 497 (851)
++++||++||||...+ ++.++..+..+.+ .+++.|. |+++++....+ ...+++||++++ +++++
T Consensus 189 ~vilr~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v~D~a~a~~~~l~~~~~~~~yni~~~--~~~s~ 266 (352)
T PRK10084 189 TIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALYKVVTEGKAGETYNIGGH--NEKKN 266 (352)
T ss_pred EEEEeccceeCCCcCccchHHHHHHHHhcCCCeEEeCCCCeEEeeEEHHHHHHHHHHHHhcCCCCceEEeCCC--CcCcH
Confidence 9999999999998643 5666666443333 3445443 33333322222 334689999998 68999
Q ss_pred HHHHHHHHHHhhc
Q psy11859 498 GEIISRGKQLIYQ 510 (851)
Q Consensus 498 ~el~~~~~~~~~~ 510 (851)
.|+++.+.+..+.
T Consensus 267 ~~~~~~i~~~~~~ 279 (352)
T PRK10084 267 LDVVLTICDLLDE 279 (352)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998875
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-26 Score=254.70 Aligned_cols=257 Identities=25% Similarity=0.263 Sum_probs=181.4
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCccc-CCCeEEEEcCCCCCc
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQ-LSRLHIIEGDILQAN 298 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~-~~~v~~v~gDi~~~~ 298 (851)
+|||||||||||++|+++|++.|+. .+|++++|........+++.+.+..... ..... .++++++.||++++.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~-~~V~~l~R~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~v~~~~~D~~~~~ 74 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQ-AKVICLVRAASEEHAMERLREALRSYRL-----WQEDLARERIEVVAGDLSEPR 74 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCC-CEEEEEEccCCHHHHHHHHHHHHHHhCC-----CCchhhhCCEEEEeCCcCccc
Confidence 5899999999999999999998743 5799999987654444555443221100 00011 158999999999999
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--ccccccC
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--VLEEKLY 376 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~i~E~~~ 376 (851)
+||+..++..+.+++|+|||+||.+++..++....++|+.||.+++++|.+.+ +++||++||..+++... ++.|+..
T Consensus 75 ~gl~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~nv~g~~~ll~~a~~~~-~~~~v~iSS~~v~~~~~~~~~~~~~~ 153 (367)
T TIGR01746 75 LGLSDAEWERLAENVDTIVHNGALVNWVYPYSELRAANVLGTREVLRLAASGR-AKPLHYVSTISVLAAIDLSTVTEDDA 153 (367)
T ss_pred CCcCHHHHHHHHhhCCEEEeCCcEeccCCcHHHHhhhhhHHHHHHHHHHhhCC-CceEEEEccccccCCcCCCCcccccc
Confidence 99999999999999999999999988877788889999999999999998875 78899999998886532 1222221
Q ss_pred CCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCC-------c
Q psy11859 377 PSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-KLPVVIVRPSIVLPSFQEP-------V 448 (851)
Q Consensus 377 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-~l~~~ivRp~~V~G~~~~p-------~ 448 (851)
..+. .....++|+.||+.+|.++..+.. +++++|+|||+|+|+.... +
T Consensus 154 ~~~~------------------------~~~~~~~Y~~sK~~~E~~~~~~~~~g~~~~i~Rpg~v~G~~~~g~~~~~~~~ 209 (367)
T TIGR01746 154 IVTP------------------------PPGLAGGYAQSKWVAELLVREASDRGLPVTIVRPGRILGNSYTGAINSSDIL 209 (367)
T ss_pred cccc------------------------ccccCCChHHHHHHHHHHHHHHHhcCCCEEEECCCceeecCCCCCCCchhHH
Confidence 1110 012346799999999999988765 9999999999999974322 2
Q ss_pred hhHhhhh-cCC-ce------EEEEcccCceeEEEeecC-CC---CccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 449 PGWVDSL-NGP-VG------VLVASGKGVVRSMILNDL-ST---ETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 449 p~~i~~~-~~~-~~------~~~~~g~~v~~~~~~~~~-~~---~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
+.++... ..+ .+ .-+...+++++++..... .. .+++||++++ .+++|.|+++.+.+ .|.
T Consensus 210 ~~~~~~~~~~~~~p~~~~~~~~~~~vddva~ai~~~~~~~~~~~~~~~~~v~~~--~~~s~~e~~~~i~~-~g~ 280 (367)
T TIGR01746 210 WRMVKGCLALGAYPDSPELTEDLTPVDYVARAIVALSSQPAASAGGPVFHVVNP--EPVSLDEFLEWLER-AGY 280 (367)
T ss_pred HHHHHHHHHhCCCCCCCccccCcccHHHHHHHHHHHHhCCCcccCCceEEecCC--CCCCHHHHHHHHHH-cCC
Confidence 2222221 111 00 001112333333332221 11 2789999998 78999999999998 553
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=250.32 Aligned_cols=245 Identities=20% Similarity=0.258 Sum_probs=166.6
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
.+|+|||||||||||++|+++|++.| .+|++++|.... .+.+. ..+ .. ..+++++.+|+++
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G---~~V~~~~r~~~~---~~~~~--------~~~----~~-~~~~~~~~~Dl~~ 69 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRG---YTVHATLRDPAK---SLHLL--------SKW----KE-GDRLRLFRADLQE 69 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCChHH---HHHHH--------Hhh----cc-CCeEEEEECCCCC
Confidence 56899999999999999999999998 688888885421 11111 101 01 2468899999998
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcc-----hhHHH-----HHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeC
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLE-----AELKE-----NVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHP 366 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~-----~~~~~-----~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~ 366 (851)
++ .+..+++++|+|||+||..... .++.. .+++|+.||.+|+++|++.+.+++||++||+.+|+
T Consensus 70 ~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg 143 (353)
T PLN02896 70 EG------SFDEAVKGCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLT 143 (353)
T ss_pred HH------HHHHHHcCCCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhcc
Confidence 86 7888888999999999986543 23333 34556799999999998875589999999988887
Q ss_pred CC-------cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEec
Q psy11859 367 DQ-------KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRP 437 (851)
Q Consensus 367 ~~-------~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp 437 (851)
.. .+++|+. +.|.+. ... .......|+.||+++|+++..+.. +++++++||
T Consensus 144 ~~~~~~~~~~~~~E~~-~~p~~~----------------~~~---~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~ 203 (353)
T PLN02896 144 AKDSNGRWRAVVDETC-QTPIDH----------------VWN---TKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVIT 203 (353)
T ss_pred ccccCCCCCCccCccc-CCcHHH----------------hhc---cCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 42 2345542 222210 000 001123699999999999998864 999999999
Q ss_pred ccccCCCCCC-chhHhhhh----cCCceE--------------EEEcccCceeEEEeecC-CCCccEEEEeCCCCccccH
Q psy11859 438 SIVLPSFQEP-VPGWVDSL----NGPVGV--------------LVASGKGVVRSMILNDL-STETQVFNISSNEVEAITW 497 (851)
Q Consensus 438 ~~V~G~~~~p-~p~~i~~~----~~~~~~--------------~~~~g~~v~~~~~~~~~-~~~~~iyni~~~~~~~~t~ 497 (851)
++||||+..+ +|.++..+ .|.... -+...+|++++++...+ ...+++|++ ++ .++++
T Consensus 204 ~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~dfi~v~Dva~a~~~~l~~~~~~~~~~~-~~--~~~s~ 280 (353)
T PLN02896 204 TTVAGPFLTPSVPSSIQVLLSPITGDSKLFSILSAVNSRMGSIALVHIEDICDAHIFLMEQTKAEGRYIC-CV--DSYDM 280 (353)
T ss_pred CcccCCCcCCCCCchHHHHHHHhcCCccccccccccccccCceeEEeHHHHHHHHHHHHhCCCcCccEEe-cC--CCCCH
Confidence 9999998754 56555432 232111 11122344444333322 223457864 55 57999
Q ss_pred HHHHHHHHHHhh
Q psy11859 498 GEIISRGKQLIY 509 (851)
Q Consensus 498 ~el~~~~~~~~~ 509 (851)
.|+++.+.+.++
T Consensus 281 ~el~~~i~~~~~ 292 (353)
T PLN02896 281 SELINHLSKEYP 292 (353)
T ss_pred HHHHHHHHHhCC
Confidence 999999999876
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=249.27 Aligned_cols=249 Identities=17% Similarity=0.214 Sum_probs=168.5
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
..++|||||||||||++|+++|++.| .+|++++|..... ..+..+.. .+....+++++.+|+++
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G---~~V~~~~r~~~~~---~~~~~~~~----------~~~~~~~~~~v~~Dl~d 67 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERG---YTVRATVRDPANV---KKVKHLLD----------LPGATTRLTLWKADLAV 67 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCC---CEEEEEEcCcchh---HHHHHHHh----------ccCCCCceEEEEecCCC
Confidence 35789999999999999999999998 6888888864332 11111100 01112368899999999
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcc--hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC---cc-
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLE--AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ---KV- 370 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~--~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~---~~- 370 (851)
++ .+..+++++|+|||+||..... .+....+++|+.||.+|+++|.+.+.+++|||+||+.+++.. .+
T Consensus 68 ~~------~~~~~~~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~ 141 (351)
T PLN02650 68 EG------SFDDAIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPV 141 (351)
T ss_pred hh------hHHHHHhCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCc
Confidence 87 7788888999999999976543 233478899999999999999987657899999998665432 12
Q ss_pred cccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC-
Q psy11859 371 LEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP- 447 (851)
Q Consensus 371 i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p- 447 (851)
++|+... +.+. .. ......+.|+.||.++|.++..+.. +++++++||++||||++.+
T Consensus 142 ~~E~~~~-~~~~------------------~~-~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~ 201 (351)
T PLN02650 142 YDEDCWS-DLDF------------------CR-RKKMTGWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTS 201 (351)
T ss_pred cCcccCC-chhh------------------hh-ccccccchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCC
Confidence 3444211 1000 00 0000124699999999999988864 8999999999999998643
Q ss_pred -chhHhhh---hcCCceE-------EEEcccCceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 448 -VPGWVDS---LNGPVGV-------LVASGKGVVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 448 -~p~~i~~---~~~~~~~-------~~~~g~~v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
.+.++.. +.+.... -+...+|+++++....+ ...+++| ++++ .++|+.|+++.+.+..+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~r~~v~V~Dva~a~~~~l~~~~~~~~~-i~~~--~~~s~~el~~~i~~~~~~ 273 (351)
T PLN02650 202 MPPSLITALSLITGNEAHYSIIKQGQFVHLDDLCNAHIFLFEHPAAEGRY-ICSS--HDATIHDLAKMLREKYPE 273 (351)
T ss_pred CCccHHHHHHHhcCCccccCcCCCcceeeHHHHHHHHHHHhcCcCcCceE-EecC--CCcCHHHHHHHHHHhCcc
Confidence 2333322 2222111 12223455555554433 2234588 5566 568999999999997653
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-25 Score=243.70 Aligned_cols=226 Identities=18% Similarity=0.246 Sum_probs=153.8
Q ss_pred EEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcCC
Q psy11859 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLG 300 (851)
Q Consensus 221 VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lg 300 (851)
|||||||||||++|+++|++.| .+++++.|...... ... .++.+|+.|..
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g---~~~v~~~~~~~~~~---~~~----------------------~~~~~~~~d~~-- 51 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG---ITDILVVDNLKDGT---KFV----------------------NLVDLDIADYM-- 51 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC---CceEEEecCCCcch---HHH----------------------hhhhhhhhhhh--
Confidence 8999999999999999999987 44555555432210 000 01223444321
Q ss_pred CCHHH-HHHHh-----cCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--cc
Q psy11859 301 IKDSD-LLMLQ-----EEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--VL 371 (851)
Q Consensus 301 ls~~~-~~~~~-----~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~i 371 (851)
+.++ +..++ .++|+|||+||..... .+....+++|+.||.+|+++|++.+ + +|||+||+++|++.. ++
T Consensus 52 -~~~~~~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~-~-~~i~~SS~~vyg~~~~~~~ 128 (308)
T PRK11150 52 -DKEDFLAQIMAGDDFGDIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE-I-PFLYASSAATYGGRTDDFI 128 (308)
T ss_pred -hHHHHHHHHhcccccCCccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHcC-C-cEEEEcchHHhCcCCCCCC
Confidence 1112 22333 2699999999965432 2345679999999999999999885 5 699999999988643 56
Q ss_pred ccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC--
Q psy11859 372 EEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP-- 447 (851)
Q Consensus 372 ~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p-- 447 (851)
+|+.+..|.++ |+.||.++|+++..+.. +++++++||++||||++.+
T Consensus 129 ~E~~~~~p~~~-----------------------------Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~ 179 (308)
T PRK11150 129 EEREYEKPLNV-----------------------------YGYSKFLFDEYVRQILPEANSQICGFRYFNVYGPREGHKG 179 (308)
T ss_pred ccCCCCCCCCH-----------------------------HHHHHHHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCCC
Confidence 67665566555 99999999999998854 8999999999999998643
Q ss_pred -chhH----hhhhc-CCceEEEEcccCceeEEEee----------cCCCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 448 -VPGW----VDSLN-GPVGVLVASGKGVVRSMILN----------DLSTETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 448 -~p~~----i~~~~-~~~~~~~~~g~~v~~~~~~~----------~~~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
++.+ ...+. +..+.+.+......+.+... .+...+++||++++ .++|+.|+++.+.+..+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~g~~~~~r~~i~v~D~a~a~~~~~~~~~~~~yni~~~--~~~s~~el~~~i~~~~~~ 256 (308)
T PRK11150 180 SMASVAFHLNNQLNNGENPKLFEGSENFKRDFVYVGDVAAVNLWFWENGVSGIFNCGTG--RAESFQAVADAVLAYHKK 256 (308)
T ss_pred ccchhHHHHHHHHhcCCCCEEecCCCceeeeeeeHHHHHHHHHHHHhcCCCCeEEcCCC--CceeHHHHHHHHHHHhCC
Confidence 2322 24443 33333332111222332222 22334579999998 679999999999998874
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=249.03 Aligned_cols=244 Identities=17% Similarity=0.115 Sum_probs=174.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
.++|+|||||||||||++|+++|++.| .+|++++|...... ..++..+ .........++.++.+|++
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G---~~V~~~~r~~~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~Dl~ 70 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKG---YEVHGIIRRSSNFN-TQRLDHI---------YIDPHPNKARMKLHYGDLS 70 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCC---CEEEEEeccccccc-ccchhhh---------ccccccccCceEEEEecCC
Confidence 357899999999999999999999998 68899988654211 0111111 0000011236899999999
Q ss_pred CCcCCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCce-----EEEEeeeeeee
Q psy11859 296 QANLGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLV-----AFIHFSTAFCH 365 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~-----~fV~vSTa~~~ 365 (851)
|.+ ++..+++ ++|+|||+||..+.. ..+...+++|+.||.+|+++|.+.+ ++ +||++||..+|
T Consensus 71 d~~------~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~-~~~~~~~~~v~~Ss~~vy 143 (340)
T PLN02653 71 DAS------SLRRWLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHG-QETGRQIKYYQAGSSEMY 143 (340)
T ss_pred CHH------HHHHHHHHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhc-cccccceeEEEeccHHHh
Confidence 876 6766666 479999999986553 3455678999999999999998875 43 89999998888
Q ss_pred CCCc-ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccC
Q psy11859 366 PDQK-VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLP 442 (851)
Q Consensus 366 ~~~~-~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G 442 (851)
|... +++|+.+..|.++ |+.||+++|.++..++. +++++..|+.++||
T Consensus 144 g~~~~~~~E~~~~~p~~~-----------------------------Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~g 194 (340)
T PLN02653 144 GSTPPPQSETTPFHPRSP-----------------------------YAVAKVAAHWYTVNYREAYGLFACNGILFNHES 194 (340)
T ss_pred CCCCCCCCCCCCCCCCCh-----------------------------hHHHHHHHHHHHHHHHHHcCCeEEEeeeccccC
Confidence 8644 5677765555555 99999999999988765 78889999999999
Q ss_pred CCCCC--chhHh----hhhcCC-ce-EEEEccc---------CceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHH
Q psy11859 443 SFQEP--VPGWV----DSLNGP-VG-VLVASGK---------GVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGK 505 (851)
Q Consensus 443 ~~~~p--~p~~i----~~~~~~-~~-~~~~~g~---------~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~ 505 (851)
|+... ++.++ ..+..+ .. +..+.|. |+++++....+...+++||++++ +++|+.|+++.+.
T Consensus 195 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~a~a~~~~~~~~~~~~yni~~g--~~~s~~e~~~~i~ 272 (340)
T PLN02653 195 PRRGENFVTRKITRAVGRIKVGLQKKLFLGNLDASRDWGFAGDYVEAMWLMLQQEKPDDYVVATE--ESHTVEEFLEEAF 272 (340)
T ss_pred CCCCcccchhHHHHHHHHHHcCCCCceEeCCCcceecceeHHHHHHHHHHHHhcCCCCcEEecCC--CceeHHHHHHHHH
Confidence 96532 33333 333232 22 3335442 33333333333334578999999 7899999999999
Q ss_pred HHhhc
Q psy11859 506 QLIYQ 510 (851)
Q Consensus 506 ~~~~~ 510 (851)
+..+.
T Consensus 273 ~~~g~ 277 (340)
T PLN02653 273 GYVGL 277 (340)
T ss_pred HHcCC
Confidence 98874
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-25 Score=241.00 Aligned_cols=232 Identities=28% Similarity=0.371 Sum_probs=171.6
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|++.| .+|+.++|........ ...+.++.+|+++.+
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g---~~V~~~~r~~~~~~~~----------------------~~~~~~~~~d~~~~~ 55 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAG---HDVRGLDRLRDGLDPL----------------------LSGVEFVVLDLTDRD 55 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCC---CeEEEEeCCCcccccc----------------------ccccceeeecccchH
Confidence 359999999999999999999998 7899999976542110 036789999999875
Q ss_pred CCCCHHHHHHHhcCc-cEEEEccccCCcchh----HHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC---cc
Q psy11859 299 LGIKDSDLLMLQEEV-SVVFNGAASLKLEAE----LKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ---KV 370 (851)
Q Consensus 299 lgls~~~~~~~~~~v-d~ViH~AA~~~~~~~----~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~---~~ 370 (851)
....+.+.+ |+|||+||....... +.+...+|+.||.+|+++|++. ++++|||+||.++++.. .+
T Consensus 56 ------~~~~~~~~~~d~vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~-~~~~~v~~ss~~~~~~~~~~~~ 128 (314)
T COG0451 56 ------LVDELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAA-GVKRFVFASSVSVVYGDPPPLP 128 (314)
T ss_pred ------HHHHHHhcCCCEEEEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEeCCCceECCCCCCCC
Confidence 666677777 999999999876543 3468999999999999999985 59999998887766643 26
Q ss_pred cccc-cCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC
Q psy11859 371 LEEK-LYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP 447 (851)
Q Consensus 371 i~E~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p 447 (851)
++|+ .++.|.++ |+.||+++|+++..+.. +++++|+||++||||+..+
T Consensus 129 ~~E~~~~~~p~~~-----------------------------Yg~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~ 179 (314)
T COG0451 129 IDEDLGPPRPLNP-----------------------------YGVSKLAAEQLLRAYARLYGLPVVILRPFNVYGPGDKP 179 (314)
T ss_pred cccccCCCCCCCH-----------------------------HHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCC
Confidence 7777 44444444 99999999999999885 8999999999999999765
Q ss_pred -ch-----hHhhhhcCCce-EEEE-cc---------cCceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHHHHhh
Q psy11859 448 -VP-----GWVDSLNGPVG-VLVA-SG---------KGVVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGKQLIY 509 (851)
Q Consensus 448 -~p-----~~i~~~~~~~~-~~~~-~g---------~~v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~~~~~ 509 (851)
++ .++..+..+.+ .... .+ +|+++++....+ ...+ +||++++. .++++.|+++.+.+..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~-~~ni~~~~-~~~~~~e~~~~~~~~~~ 257 (314)
T COG0451 180 DLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENPDGG-VFNIGSGT-AEITVRELAEAVAEAVG 257 (314)
T ss_pred CCCcCcHHHHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHHHHHHHhCCCCc-EEEeCCCC-CcEEHHHHHHHHHHHhC
Confidence 22 22333333333 2222 11 122222222222 2233 99999983 27999999999999988
Q ss_pred cCCC
Q psy11859 510 QYPL 513 (851)
Q Consensus 510 ~~p~ 513 (851)
..+.
T Consensus 258 ~~~~ 261 (314)
T COG0451 258 SKAP 261 (314)
T ss_pred CCCc
Confidence 6543
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-24 Score=240.22 Aligned_cols=242 Identities=18% Similarity=0.204 Sum_probs=171.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCC-HHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLT-PKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~-~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
+++++|||||||||||++|+++|++.| ..|++++|...... ...++.+. ......++.++.+|+
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g---~~V~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~D~ 67 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAG---YKVVVIDNLDNSSEEALRRVKEL------------AGDLGDNLVFHKVDL 67 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCCcchHHHHHHHHHh------------hcccCccceEEecCc
Confidence 467899999999999999999999987 67888887643211 11122111 111123688999999
Q ss_pred CCCcCCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC-
Q psy11859 295 LQANLGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ- 368 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~- 368 (851)
++++ ++..+++ ++|+|||+||..... ..+...+++|+.|+.+++++|++.+ +++||++||+.+|+..
T Consensus 68 ~~~~------~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~Ss~~vyg~~~ 140 (352)
T PLN02240 68 RDKE------ALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHG-CKKLVFSSSATVYGQPE 140 (352)
T ss_pred CCHH------HHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEccHHHhCCCC
Confidence 9886 6776665 689999999976432 3556789999999999999998875 8999999998887643
Q ss_pred -cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC---CCCEEEEecccccCCC
Q psy11859 369 -KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT---KLPVVIVRPSIVLPSF 444 (851)
Q Consensus 369 -~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~---~l~~~ivRp~~V~G~~ 444 (851)
.+++|+.+..|.++ |+.||+.+|++++.+.. +++++++|+++|||++
T Consensus 141 ~~~~~E~~~~~~~~~-----------------------------Y~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~ 191 (352)
T PLN02240 141 EVPCTEEFPLSATNP-----------------------------YGRTKLFIEEICRDIHASDPEWKIILLRYFNPVGAH 191 (352)
T ss_pred CCCCCCCCCCCCCCH-----------------------------HHHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCC
Confidence 36777765555544 99999999999987642 7899999999999975
Q ss_pred CC------C------chhHhhhh-cCCceE--EEE------cc---------cCceeEEEeecC------CCCccEEEEe
Q psy11859 445 QE------P------VPGWVDSL-NGPVGV--LVA------SG---------KGVVRSMILNDL------STETQVFNIS 488 (851)
Q Consensus 445 ~~------p------~p~~i~~~-~~~~~~--~~~------~g---------~~v~~~~~~~~~------~~~~~iyni~ 488 (851)
.. + +..++..+ .+..+. +.+ .| +|+++++..+.. ...+++||++
T Consensus 192 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~D~a~a~~~a~~~~~~~~~~~~~~yni~ 271 (352)
T PLN02240 192 PSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYPTKDGTGVRDYIHVMDLADGHIAALRKLFTDPDIGCEAYNLG 271 (352)
T ss_pred ccccccCCCCCCcchHHHHHHHHHhCCCCceEEeCCCCCCCCCCEEEeeEEHHHHHHHHHHHHhhhhhccCCCCceEEcc
Confidence 31 1 22233332 332222 222 12 233332221111 1235799999
Q ss_pred CCCCccccHHHHHHHHHHHhhc
Q psy11859 489 SNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 489 ~~~~~~~t~~el~~~~~~~~~~ 510 (851)
++ .++|++|+++.+.+.++.
T Consensus 272 ~~--~~~s~~el~~~i~~~~g~ 291 (352)
T PLN02240 272 TG--KGTSVLEMVAAFEKASGK 291 (352)
T ss_pred CC--CcEeHHHHHHHHHHHhCC
Confidence 98 689999999999999875
|
|
| >PF03015 Sterile: Male sterility protein; InterPro: IPR004262 This family represents the C-terminal region of the male sterility protein in a number of organisms | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-26 Score=201.61 Aligned_cols=94 Identities=35% Similarity=0.667 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhccccccCeEEEcChhHHHHHHhcCccCCCccccccccCCHHHHH
Q psy11859 537 FTQILPAYLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLLALHDNISEKDKQTFYIANIDVNIDDYL 616 (851)
Q Consensus 537 ~~~~lpa~~~d~~~~l~G~~p~l~~~~~ki~~~~~~~~~f~~~~w~f~~~n~~~l~~~l~~~d~~~F~~d~~~i~W~~Y~ 616 (851)
++|++||+++|+++++.|++|++.++++|+.++.++++||++++|.|+++|+.+|++.|+++||++|+||+++|||++|+
T Consensus 1 ~~h~lPA~~~D~~~~l~g~kp~~~k~~~ki~~~~~~~~~F~~~eW~F~~~n~~~L~~~l~~~D~~~F~fD~~~idW~~Y~ 80 (94)
T PF03015_consen 1 LFHFLPAYLLDLILRLFGQKPRMVKIYRKIRKALEVLEYFTTNEWIFDNDNTRRLWERLSPEDREIFNFDIRSIDWEEYF 80 (94)
T ss_pred CcchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhCceeecchHHHHHHHhCchhcCceecCCCCCCCHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCC
Q psy11859 617 KTIILGARQYCLKE 630 (851)
Q Consensus 617 ~~~~~GirkyllKe 630 (851)
.++++|+|+|++||
T Consensus 81 ~~~~~G~rkyllke 94 (94)
T PF03015_consen 81 RNYIPGIRKYLLKE 94 (94)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999999998
|
The Arabidopsis thaliana male sterility 2 (MS2) protein is involved in male gametogenesis. The MS2 protein shows sequence similarity to a jojoba protein (also a member of this group) that converts wax fatty acids to fatty alcohols. It has been suggested that a possible function of the MS2 protein may be as a fatty acyl reductase in the formation of pollen wall substances [].; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process |
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-25 Score=247.24 Aligned_cols=249 Identities=15% Similarity=0.166 Sum_probs=168.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
.++|+|||||||||||++|+++|++.| .+|+++.|.... .+.+.++... . +......++.++.+|++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G---~~V~~~~r~~~~---~~~l~~l~~~------~-~~~~~~~~~~~v~~Dl~ 117 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHG---YSVRIAVDTQED---KEKLREMEMF------G-EMGRSNDGIWTVMANLT 117 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHhhh------c-cccccCCceEEEEcCCC
Confidence 568999999999999999999999998 678887775321 1112111000 0 00001135889999999
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCcch---hHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeee--eeeCCC--
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKLEA---ELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTA--FCHPDQ-- 368 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~---~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa--~~~~~~-- 368 (851)
|++ ++..+++++|+|||+|+.+.... ......++|+.||.+|+++|++..++++|||+||+ .+++..
T Consensus 118 d~~------~l~~~i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~ 191 (367)
T PLN02686 118 EPE------SLHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYP 191 (367)
T ss_pred CHH------HHHHHHHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCC
Confidence 986 78888889999999999875432 22456789999999999999886459999999996 355431
Q ss_pred ----cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccC
Q psy11859 369 ----KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLP 442 (851)
Q Consensus 369 ----~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G 442 (851)
..++|+.+.....+ ....+.|+.||.++|+++..++. +++++++||++|||
T Consensus 192 ~~~~~~i~E~~~~~~~~~-----------------------~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyG 248 (367)
T PLN02686 192 HDLPPVIDEESWSDESFC-----------------------RDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTG 248 (367)
T ss_pred CCCCcccCCCCCCChhhc-----------------------ccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceEC
Confidence 12444421110000 00124599999999999988754 89999999999999
Q ss_pred CCCCC-chh-HhhhhcCCceEEEE-------cccCceeEEEeecCC----CCccEEEEeCCCCccccHHHHHHHHHHHhh
Q psy11859 443 SFQEP-VPG-WVDSLNGPVGVLVA-------SGKGVVRSMILNDLS----TETQVFNISSNEVEAITWGEIISRGKQLIY 509 (851)
Q Consensus 443 ~~~~p-~p~-~i~~~~~~~~~~~~-------~g~~v~~~~~~~~~~----~~~~iyni~~~~~~~~t~~el~~~~~~~~~ 509 (851)
|+..+ .+. .+..+.+. ..+++ +.+|++++++.+.+. ..+++| ++++ .++++.|+++.+.+.++
T Consensus 249 p~~~~~~~~~~~~~~~g~-~~~~g~g~~~~v~V~Dva~A~~~al~~~~~~~~~~~y-i~~g--~~~s~~e~~~~i~~~~g 324 (367)
T PLN02686 249 PGFFRRNSTATIAYLKGA-QEMLADGLLATADVERLAEAHVCVYEAMGNKTAFGRY-ICFD--HVVSREDEAEELARQIG 324 (367)
T ss_pred CCCCCCCChhHHHHhcCC-CccCCCCCcCeEEHHHHHHHHHHHHhccCCCCCCCcE-EEeC--CCccHHHHHHHHHHHcC
Confidence 97532 222 22223332 11222 234556555544332 345688 7777 67999999999999987
Q ss_pred c
Q psy11859 510 Q 510 (851)
Q Consensus 510 ~ 510 (851)
.
T Consensus 325 ~ 325 (367)
T PLN02686 325 L 325 (367)
T ss_pred C
Confidence 4
|
|
| >KOG1429|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=220.41 Aligned_cols=233 Identities=24% Similarity=0.278 Sum_probs=177.0
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
.+++|+||||+||||||||++|+..| +.|++++....+.. ..+... ...+.++.+.-|+..
T Consensus 26 ~~lrI~itGgaGFIgSHLvdkLm~eg---h~VIa~Dn~ftg~k--~n~~~~--------------~~~~~fel~~hdv~~ 86 (350)
T KOG1429|consen 26 QNLRILITGGAGFIGSHLVDKLMTEG---HEVIALDNYFTGRK--ENLEHW--------------IGHPNFELIRHDVVE 86 (350)
T ss_pred CCcEEEEecCcchHHHHHHHHHHhcC---CeEEEEecccccch--hhcchh--------------ccCcceeEEEeechh
Confidence 45899999999999999999999998 78999988776531 111111 123467788888876
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCC---cchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--cc
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLK---LEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--VL 371 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~---~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~i 371 (851)
+ ++.+||.|||+||..+ +..++-..+.+|+.||.+++.+|++.+ ++|+++||+-+||+.. +.
T Consensus 87 p-----------l~~evD~IyhLAapasp~~y~~npvktIktN~igtln~lglakrv~--aR~l~aSTseVYgdp~~hpq 153 (350)
T KOG1429|consen 87 P-----------LLKEVDQIYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARFLLASTSEVYGDPLVHPQ 153 (350)
T ss_pred H-----------HHHHhhhhhhhccCCCCcccccCccceeeecchhhHHHHHHHHHhC--ceEEEeecccccCCcccCCC
Confidence 5 5678999999999754 456777889999999999999999986 8999999999999854 44
Q ss_pred cccc--CCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCC-
Q psy11859 372 EEKL--YPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQE- 446 (851)
Q Consensus 372 ~E~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~- 446 (851)
.|+. ...|..| ...|...|++||.++..|.+ |+.+.|.|++|.|||+..
T Consensus 154 ~e~ywg~vnpigp--------------------------r~cydegKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm~~ 207 (350)
T KOG1429|consen 154 VETYWGNVNPIGP--------------------------RSCYDEGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRMHM 207 (350)
T ss_pred ccccccccCcCCc--------------------------hhhhhHHHHHHHHHHHHhhcccCcEEEEEeeecccCCcccc
Confidence 4443 2234443 35699999999999999987 999999999999999863
Q ss_pred ----CchhHhhhhcCCceEE-EEcccCceeEEEeecC----------CCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 447 ----PVPGWVDSLNGPVGVL-VASGKGVVRSMILNDL----------STETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 447 ----p~p~~i~~~~~~~~~~-~~~g~~v~~~~~~~~~----------~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
++..|+.+.....++. +|+| -..|+|....+ ....+-+|++++ +-+|+.|+++.+.+..+.
T Consensus 208 ~dgrvvsnf~~q~lr~epltv~g~G-~qtRSF~yvsD~Vegll~Lm~s~~~~pvNiGnp--~e~Tm~elAemv~~~~~~ 283 (350)
T KOG1429|consen 208 DDGRVVSNFIAQALRGEPLTVYGDG-KQTRSFQYVSDLVEGLLRLMESDYRGPVNIGNP--GEFTMLELAEMVKELIGP 283 (350)
T ss_pred CCChhhHHHHHHHhcCCCeEEEcCC-cceEEEEeHHHHHHHHHHHhcCCCcCCcccCCc--cceeHHHHHHHHHHHcCC
Confidence 4677887755455544 4444 34455544333 334455999998 569999999999998753
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-24 Score=233.53 Aligned_cols=233 Identities=25% Similarity=0.279 Sum_probs=171.4
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+||||||+||||++|++.|++.| ..|++++|...... .+ ...+++++.+|+++++
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g---~~V~~~~r~~~~~~---~~------------------~~~~~~~~~~D~~~~~ 56 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG---EEVRVLVRPTSDRR---NL------------------EGLDVEIVEGDLRDPA 56 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC---CEEEEEEecCcccc---cc------------------ccCCceEEEeeCCCHH
Confidence 579999999999999999999987 68999998654310 00 0126889999999886
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC---cccccc
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ---KVLEEK 374 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~---~~i~E~ 374 (851)
++..+++++|+|||+|+.... ...+...+++|+.|+.+++++|.+.+ +++||++||.++++.. .+++|+
T Consensus 57 ------~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~e~ 129 (328)
T TIGR03466 57 ------SLRKAVAGCRALFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAG-VERVVYTSSVATLGVRGDGTPADET 129 (328)
T ss_pred ------HHHHHHhCCCEEEEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEechhhcCcCCCCCCcCcc
Confidence 788888999999999987643 34567889999999999999999875 8999999999888742 256666
Q ss_pred cCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC---ch
Q psy11859 375 LYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP---VP 449 (851)
Q Consensus 375 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p---~p 449 (851)
.+..|.++ .+.|+.||.++|+++..+.. +++++++||+++||++... ..
T Consensus 130 ~~~~~~~~--------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~~~~~ 183 (328)
T TIGR03466 130 TPSSLDDM--------------------------IGHYKRSKFLAEQAALEMAAEKGLPVVIVNPSTPIGPRDIKPTPTG 183 (328)
T ss_pred CCCCcccc--------------------------cChHHHHHHHHHHHHHHHHHhcCCCEEEEeCCccCCCCCCCCCcHH
Confidence 54444322 24599999999999998764 8999999999999998642 22
Q ss_pred hHhhh-hcCCceEEEE------cccCceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHHHHhhcC
Q psy11859 450 GWVDS-LNGPVGVLVA------SGKGVVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 450 ~~i~~-~~~~~~~~~~------~g~~v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
.++.. +.+..+...+ ..+|+++++....+ ...+.+||++ + .++++.|+++.+.+.+|..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~-~--~~~s~~e~~~~i~~~~g~~ 250 (328)
T TIGR03466 184 RIIVDFLNGKMPAYVDTGLNLVHVDDVAEGHLLALERGRIGERYILG-G--ENLTLKQILDKLAEITGRP 250 (328)
T ss_pred HHHHHHHcCCCceeeCCCcceEEHHHHHHHHHHHHhCCCCCceEEec-C--CCcCHHHHHHHHHHHhCCC
Confidence 22222 3333332222 22344444333222 3346788875 5 5799999999999998853
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-24 Score=234.65 Aligned_cols=251 Identities=13% Similarity=0.097 Sum_probs=172.2
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
.+++|||||||||||++|+++|++.| ++|++++|........+.+.. + .....+++++.+|++|
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G---~~V~~~~R~~~~~~~~~~~~~---------l----~~~~~~~~~~~~Dl~d 68 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRG---YTVHAAVQKNGETEIEKEIRG---------L----SCEEERLKVFDVDPLD 68 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC---CEEEEEEcCchhhhHHHHHHh---------c----ccCCCceEEEEecCCC
Confidence 35789999999999999999999998 788888885432111111111 0 0012368899999999
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeee--CCC-----
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCH--PDQ----- 368 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~--~~~----- 368 (851)
++ .+..++.++|.|+|+++.... ...+.+.+++|+.||.+++++|.+...+++||++||..+. ++.
T Consensus 69 ~~------~~~~~l~~~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~ 142 (297)
T PLN02583 69 YH------SILDALKGCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQ 142 (297)
T ss_pred HH------HHHHHHcCCCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCC
Confidence 86 788888999999998865532 2235678999999999999999886458999999997543 311
Q ss_pred cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCC
Q psy11859 369 KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 369 ~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~ 446 (851)
.+++|+.+..+... ......|+.||.+||++++.+.+ +++++++||++||||...
T Consensus 143 ~~~~E~~~~~~~~~-----------------------~~~~~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~ 199 (297)
T PLN02583 143 KDVDERSWSDQNFC-----------------------RKFKLWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLT 199 (297)
T ss_pred CCCCcccCCCHHHH-----------------------hhcccHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCC
Confidence 13455432111100 00113599999999999988753 899999999999999865
Q ss_pred CchhHhhh---hcCCceEEEEcccCceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHHHHhhcCCCC
Q psy11859 447 PVPGWVDS---LNGPVGVLVASGKGVVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGKQLIYQYPLE 514 (851)
Q Consensus 447 p~p~~i~~---~~~~~~~~~~~g~~v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~p~~ 514 (851)
+....+.. ..+.....+.+.+|+++++..+.+ ...++.|+++++ ....+.++++++.+.++..|..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~v~V~Dva~a~~~al~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~p~~~~~ 269 (297)
T PLN02583 200 QHNPYLKGAAQMYENGVLVTVDVNFLVDAHIRAFEDVSSYGRYLCFNH--IVNTEEDAVKLAQMLSPLIPSP 269 (297)
T ss_pred CchhhhcCCcccCcccCcceEEHHHHHHHHHHHhcCcccCCcEEEecC--CCccHHHHHHHHHHhCCCCCCC
Confidence 42111111 111112223445677777776655 344568988877 3455788999999988776543
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-24 Score=226.57 Aligned_cols=208 Identities=28% Similarity=0.406 Sum_probs=163.4
Q ss_pred EEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcCC
Q psy11859 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLG 300 (851)
Q Consensus 221 VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lg 300 (851)
|||||||||||++|+++|+++| ..|+.+.|.......... ..+++++.+|+.+.+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g---~~v~~~~~~~~~~~~~~~--------------------~~~~~~~~~dl~~~~-- 55 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG---HEVIVLSRSSNSESFEEK--------------------KLNVEFVIGDLTDKE-- 55 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---TEEEEEESCSTGGHHHHH--------------------HTTEEEEESETTSHH--
T ss_pred EEEEccCCHHHHHHHHHHHHcC---Cccccccccccccccccc--------------------cceEEEEEeeccccc--
Confidence 8999999999999999999998 567788887764211100 017899999999876
Q ss_pred CCHHHHHHHhcC--ccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC--ccccc
Q psy11859 301 IKDSDLLMLQEE--VSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ--KVLEE 373 (851)
Q Consensus 301 ls~~~~~~~~~~--vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~--~~i~E 373 (851)
.+..+++. +|+|||+||..... ......++.|+.++.+++++|.+.+ +++||++||+.+|+.. .+++|
T Consensus 56 ----~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~i~~sS~~~y~~~~~~~~~e 130 (236)
T PF01370_consen 56 ----QLEKLLEKANIDVVIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAG-VKRFIFLSSASVYGDPDGEPIDE 130 (236)
T ss_dssp ----HHHHHHHHHTESEEEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-TSEEEEEEEGGGGTSSSSSSBET
T ss_pred ----cccccccccCceEEEEeecccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence 78777775 59999999987532 3456789999999999999999996 7999999999888876 36788
Q ss_pred ccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCC---C---
Q psy11859 374 KLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSF---Q--- 445 (851)
Q Consensus 374 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~---~--- 445 (851)
+.+..|.++ |+.+|+.+|+++..+.+ +++++++||++||||. .
T Consensus 131 ~~~~~~~~~-----------------------------Y~~~K~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~ 181 (236)
T PF01370_consen 131 DSPINPLSP-----------------------------YGASKRAAEELLRDYAKKYGLRVTILRPPNVYGPGNPNNNSS 181 (236)
T ss_dssp TSGCCHSSH-----------------------------HHHHHHHHHHHHHHHHHHHTSEEEEEEESEEESTTSSSSSTS
T ss_pred ccccccccc-----------------------------cccccccccccccccccccccccccccccccccccccccccc
Confidence 877777766 99999999999998875 9999999999999999 2
Q ss_pred CCchhHhhhhcCCc-eEEEEcccCceeEEEeecC-----------CC-CccEEEEe
Q psy11859 446 EPVPGWVDSLNGPV-GVLVASGKGVVRSMILNDL-----------ST-ETQVFNIS 488 (851)
Q Consensus 446 ~p~p~~i~~~~~~~-~~~~~~g~~v~~~~~~~~~-----------~~-~~~iyni~ 488 (851)
..++.|+..+..+. ..+++.|.. .+.+....+ .. .+++||++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~D~a~~~~~~~~~~~~~~~~yNig 236 (236)
T PF01370_consen 182 SFLPSLIRQALKGKPIKIPGDGSQ-VRDFIHVDDLAEAIVAALENPKAAGGIYNIG 236 (236)
T ss_dssp SHHHHHHHHHHTTSSEEEESTSSC-EEEEEEHHHHHHHHHHHHHHSCTTTEEEEES
T ss_pred cccchhhHHhhcCCcccccCCCCC-ccceEEHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence 23788888876555 455565555 444443333 33 68899985
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-24 Score=233.81 Aligned_cols=212 Identities=19% Similarity=0.201 Sum_probs=162.0
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcC
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANL 299 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~l 299 (851)
+|||||||||||++|+++|++.| .+|+++.|. .+|+.+++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g---~~v~~~~r~------------------------------------~~d~~~~~- 40 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG---RVVVALTSS------------------------------------QLDLTDPE- 40 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC---CEEEEeCCc------------------------------------ccCCCCHH-
Confidence 48999999999999999999988 678888773 36777765
Q ss_pred CCCHHHHHHHhcC--ccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC--cccc
Q psy11859 300 GIKDSDLLMLQEE--VSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ--KVLE 372 (851)
Q Consensus 300 gls~~~~~~~~~~--vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~--~~i~ 372 (851)
++..++++ +|+|||+||....+ ..+...+++|+.||.+++++|++.+ . +||++||+++|+.. .+++
T Consensus 41 -----~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~v~~Ss~~vy~~~~~~~~~ 113 (287)
T TIGR01214 41 -----ALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHG-A-RLVHISTDYVFDGEGKRPYR 113 (287)
T ss_pred -----HHHHHHHhCCCCEEEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEeeeeeecCCCCCCCC
Confidence 67777765 59999999976543 2456788999999999999998876 4 89999999998753 3677
Q ss_pred cccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCC--CCchh
Q psy11859 373 EKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQ--EPVPG 450 (851)
Q Consensus 373 E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~--~p~p~ 450 (851)
|+.++.|.++ |+.+|..+|.++..+ +++++|+||++|||+.+ ..++.
T Consensus 114 E~~~~~~~~~-----------------------------Y~~~K~~~E~~~~~~--~~~~~ilR~~~v~G~~~~~~~~~~ 162 (287)
T TIGR01214 114 EDDATNPLNV-----------------------------YGQSKLAGEQAIRAA--GPNALIVRTSWLYGGGGGRNFVRT 162 (287)
T ss_pred CCCCCCCcch-----------------------------hhHHHHHHHHHHHHh--CCCeEEEEeeecccCCCCCCHHHH
Confidence 7765555444 999999999999876 68999999999999985 22445
Q ss_pred HhhhhcCCceEEE-Ec-------ccCceeEEEeecCC--CCccEEEEeCCCCccccHHHHHHHHHHHhhcC
Q psy11859 451 WVDSLNGPVGVLV-AS-------GKGVVRSMILNDLS--TETQVFNISSNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 451 ~i~~~~~~~~~~~-~~-------g~~v~~~~~~~~~~--~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
++..+..+..+.+ +. .+|+++++...... ..+++||++++ .++|+.|+++.+.+.++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~~~~~ni~~~--~~~s~~e~~~~i~~~~~~~ 231 (287)
T TIGR01214 163 MLRLAGRGEELRVVDDQIGSPTYAKDLARVIAALLQRLARARGVYHLANS--GQCSWYEFAQAIFEEAGAD 231 (287)
T ss_pred HHHHhhcCCCceEecCCCcCCcCHHHHHHHHHHHHhhccCCCCeEEEECC--CCcCHHHHHHHHHHHhCcc
Confidence 5655544433332 21 13444444433332 45789999998 6899999999999998864
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=230.90 Aligned_cols=223 Identities=21% Similarity=0.256 Sum_probs=165.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+|||||||||||++|+++|++.|+ ..+|++++|.... ...+.. +.+ ..++.++.+|++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~-~~~V~~~~r~~~~---~~~~~~------------~~~--~~~~~~v~~Dl~ 63 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYN-PKKIIIYSRDELK---QWEMQQ------------KFP--APCLRFFIGDVR 63 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCC-CcEEEEEcCChhH---HHHHHH------------HhC--CCcEEEEEccCC
Confidence 5789999999999999999999999862 2578888876432 111111 111 136889999999
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccc
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLE 372 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~ 372 (851)
|++ ++..+++++|+|||+||..... .++.+.+++|+.||.+++++|.+.+ +++||++||..
T Consensus 64 d~~------~l~~~~~~iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~-~~~iV~~SS~~--------- 127 (324)
T TIGR03589 64 DKE------RLTRALRGVDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNG-VKRVVALSTDK--------- 127 (324)
T ss_pred CHH------HHHHHHhcCCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEeCCC---------
Confidence 986 7888888999999999976442 3456789999999999999999875 88999999942
Q ss_pred cccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh-----CCCCEEEEecccccCCCCCC
Q psy11859 373 EKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK-----TKLPVVIVRPSIVLPSFQEP 447 (851)
Q Consensus 373 E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~-----~~l~~~ivRp~~V~G~~~~p 447 (851)
...|.++ |+.||+++|+++..++ .+++++++|||+||||.+..
T Consensus 128 ---~~~p~~~-----------------------------Y~~sK~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~~~ 175 (324)
T TIGR03589 128 ---AANPINL-----------------------------YGATKLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRGSV 175 (324)
T ss_pred ---CCCCCCH-----------------------------HHHHHHHHHHHHHHHHhhccccCcEEEEEeecceeCCCCCc
Confidence 1223344 9999999999997642 28999999999999998877
Q ss_pred chhHhhhhcCCc-eEEEEcccCceeEEEeecC----------C-CCccEEEEeCCCCccccHHHHHHHHHHHh
Q psy11859 448 VPGWVDSLNGPV-GVLVASGKGVVRSMILNDL----------S-TETQVFNISSNEVEAITWGEIISRGKQLI 508 (851)
Q Consensus 448 ~p~~i~~~~~~~-~~~~~~g~~v~~~~~~~~~----------~-~~~~iyni~~~~~~~~t~~el~~~~~~~~ 508 (851)
+|.+...+..+. ++.++.+ +..|.++...+ . ..+++|+ +++ ..+++.|+++.+.+..
T Consensus 176 i~~~~~~~~~~~~~~~i~~~-~~~r~~i~v~D~a~a~~~al~~~~~~~~~~-~~~--~~~sv~el~~~i~~~~ 244 (324)
T TIGR03589 176 VPFFKSLKEEGVTELPITDP-RMTRFWITLEQGVNFVLKSLERMLGGEIFV-PKI--PSMKITDLAEAMAPEC 244 (324)
T ss_pred HHHHHHHHHhCCCCeeeCCC-CceEeeEEHHHHHHHHHHHHhhCCCCCEEc-cCC--CcEEHHHHHHHHHhhC
Confidence 888887765443 4444433 34444443322 2 2467884 555 4689999999998864
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=230.71 Aligned_cols=228 Identities=21% Similarity=0.234 Sum_probs=159.6
Q ss_pred EEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcCC
Q psy11859 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLG 300 (851)
Q Consensus 221 VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lg 300 (851)
|||||||||||++|++.|++.|+ ..|+++.|..... .+.+ + ....+.+|+.+++
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~--~~v~~~~~~~~~~----~~~~---------~---------~~~~~~~d~~~~~-- 54 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGI--TDILVVDNLRDGH----KFLN---------L---------ADLVIADYIDKED-- 54 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCC--ceEEEEecCCCch----hhhh---------h---------hheeeeccCcchh--
Confidence 79999999999999999999874 3677777764321 1110 0 1124678888765
Q ss_pred CCHHHHHHHh----cCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc-ccccc
Q psy11859 301 IKDSDLLMLQ----EEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK-VLEEK 374 (851)
Q Consensus 301 ls~~~~~~~~----~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~-~i~E~ 374 (851)
.+..+. .++|+|||+||..... .++...+++|+.||.+|+++|.+.+ + +||++||+++|++.. ++.|+
T Consensus 55 ----~~~~~~~~~~~~~D~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~-~~v~~SS~~vy~~~~~~~~e~ 128 (314)
T TIGR02197 55 ----FLDRLEKGAFGKIEAIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEKG-I-PFIYASSAATYGDGEAGFREG 128 (314)
T ss_pred ----HHHHHHhhccCCCCEEEECccccCccccchHHHHHHHHHHHHHHHHHHHHhC-C-cEEEEccHHhcCCCCCCcccc
Confidence 445444 4899999999976543 3556788999999999999999875 5 799999999888543 44444
Q ss_pred cC-CCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----CCCCEEEEecccccCCCCCC--
Q psy11859 375 LY-PSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----TKLPVVIVRPSIVLPSFQEP-- 447 (851)
Q Consensus 375 ~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~~l~~~ivRp~~V~G~~~~p-- 447 (851)
.. ..|. +.|+.||+.+|.+++++. .+++++++||++||||++.+
T Consensus 129 ~~~~~p~-----------------------------~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~ 179 (314)
T TIGR02197 129 RELERPL-----------------------------NVYGYSKFLFDQYVRRRVLPEALSAQVVGLRYFNVYGPREYHKG 179 (314)
T ss_pred cCcCCCC-----------------------------CHHHHHHHHHHHHHHHHhHhhccCCceEEEEEeeccCCCCCCCC
Confidence 32 2233 449999999999998752 26799999999999998642
Q ss_pred -----chhHhhhhc-CCceEEEEc------c---------cCceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHHH
Q psy11859 448 -----VPGWVDSLN-GPVGVLVAS------G---------KGVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQ 506 (851)
Q Consensus 448 -----~p~~i~~~~-~~~~~~~~~------g---------~~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~ 506 (851)
++.++..+. +....+.+. | +|+++++........+++||++++ .++|+.|+++.+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~i~~~~~~~~~~~yni~~~--~~~s~~e~~~~i~~ 257 (314)
T TIGR02197 180 KMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVVDVNLWLLENGVSGIFNLGTG--RARSFNDLADAVFK 257 (314)
T ss_pred CcccHHHHHHHHHhcCCCeEEecCccccCCCCceeeeEEHHHHHHHHHHHHhcccCceEEcCCC--CCccHHHHHHHHHH
Confidence 334444433 333333321 1 122222222222345679999998 68999999999999
Q ss_pred HhhcC
Q psy11859 507 LIYQY 511 (851)
Q Consensus 507 ~~~~~ 511 (851)
.++..
T Consensus 258 ~~g~~ 262 (314)
T TIGR02197 258 ALGKD 262 (314)
T ss_pred HhCCC
Confidence 98853
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.8e-24 Score=231.08 Aligned_cols=216 Identities=16% Similarity=0.217 Sum_probs=156.3
Q ss_pred EEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcCCC
Q psy11859 222 LVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLGI 301 (851)
Q Consensus 222 lVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lgl 301 (851)
||||||||||++|++.|++.+. .|+++.+. ..+|+++.+
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~---~v~~~~~~-----------------------------------~~~Dl~~~~--- 39 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGF---TNLVLRTH-----------------------------------KELDLTRQA--- 39 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCC---cEEEeecc-----------------------------------ccCCCCCHH---
Confidence 6999999999999999999884 44443221 148998876
Q ss_pred CHHHHHHHhc--CccEEEEccccCCc----chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC--ccccc
Q psy11859 302 KDSDLLMLQE--EVSVVFNGAASLKL----EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ--KVLEE 373 (851)
Q Consensus 302 s~~~~~~~~~--~vd~ViH~AA~~~~----~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~--~~i~E 373 (851)
++..+++ ++|+|||+||..+. ...+.+.+++|+.||.+|+++|++.+ +++||++||+++|+.. .+++|
T Consensus 40 ---~l~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~i~~SS~~vyg~~~~~~~~E 115 (306)
T PLN02725 40 ---DVEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHG-VKKLLFLGSSCIYPKFAPQPIPE 115 (306)
T ss_pred ---HHHHHHhccCCCEEEEeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcC-CCeEEEeCceeecCCCCCCCCCH
Confidence 6776655 68999999997543 23456789999999999999999885 8999999999998853 35666
Q ss_pred ccCCC-CCCHHHHHHHHhhccHHHHhhhCCcccCCCCc-hhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCC---
Q psy11859 374 KLYPS-PVSPHDIMRAMEWMDDETIKQLTPKILGPHPN-SYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQE--- 446 (851)
Q Consensus 374 ~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n-~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~--- 446 (851)
+.+.. |..| ++ .|+.||.++|+++..+.. +++++++||++||||+..
T Consensus 116 ~~~~~~~~~p--------------------------~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~ 169 (306)
T PLN02725 116 TALLTGPPEP--------------------------TNEWYAIAKIAGIKMCQAYRIQYGWDAISGMPTNLYGPHDNFHP 169 (306)
T ss_pred HHhccCCCCC--------------------------CcchHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCC
Confidence 55321 2222 23 399999999999887754 899999999999999753
Q ss_pred ----CchhHhhhh----cCCceEEE--Eccc---------CceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHHH
Q psy11859 447 ----PVPGWVDSL----NGPVGVLV--ASGK---------GVVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGKQ 506 (851)
Q Consensus 447 ----p~p~~i~~~----~~~~~~~~--~~g~---------~v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~~ 506 (851)
.+|.++..+ ..+.++.+ +.|. |+++++....+ ...++.||++++ .++|+.|+++.+.+
T Consensus 170 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv~~~~~~~~~~~~~~~~~ni~~~--~~~s~~e~~~~i~~ 247 (306)
T PLN02725 170 ENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDDLADAVVFLMRRYSGAEHVNVGSG--DEVTIKELAELVKE 247 (306)
T ss_pred CCCcccHHHHHHHHHHhhcCCCeEEEcCCCCeeeccccHHHHHHHHHHHHhccccCcceEeCCC--CcccHHHHHHHHHH
Confidence 145555432 33333333 3332 34444333222 234568999988 68999999999999
Q ss_pred Hhhc
Q psy11859 507 LIYQ 510 (851)
Q Consensus 507 ~~~~ 510 (851)
.++.
T Consensus 248 ~~~~ 251 (306)
T PLN02725 248 VVGF 251 (306)
T ss_pred HhCC
Confidence 8874
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=229.31 Aligned_cols=210 Identities=20% Similarity=0.208 Sum_probs=143.5
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
.|+|||||||||||++|++.|++.|. +|.+.. +|+.+.
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~---~V~~~~---------------------------------------~~~~~~ 46 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGI---DFHYGS---------------------------------------GRLENR 46 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCC---EEEEec---------------------------------------CccCCH
Confidence 47899999999999999999999984 454321 122221
Q ss_pred cCCCCHHHHHHHh--cCccEEEEccccCCc------chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC-
Q psy11859 298 NLGIKDSDLLMLQ--EEVSVVFNGAASLKL------EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ- 368 (851)
Q Consensus 298 ~lgls~~~~~~~~--~~vd~ViH~AA~~~~------~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~- 368 (851)
. .+...+ .++|+|||+||..+. ..++.+++++|+.||.+|+++|++.+ ++ ++++||..+++..
T Consensus 47 ~------~v~~~l~~~~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~g-v~-~v~~sS~~vy~~~~ 118 (298)
T PLN02778 47 A------SLEADIDAVKPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERG-LV-LTNYATGCIFEYDD 118 (298)
T ss_pred H------HHHHHHHhcCCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC-CC-EEEEecceEeCCCC
Confidence 1 122222 268999999998742 24567899999999999999999985 76 4555655554321
Q ss_pred -------cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEeccccc
Q psy11859 369 -------KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVL 441 (851)
Q Consensus 369 -------~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~ 441 (851)
.++.|+..+.|. .|.|+.||+++|.++..+. +..++|++.++
T Consensus 119 ~~p~~~~~~~~Ee~~p~~~----------------------------~s~Yg~sK~~~E~~~~~y~---~~~~lr~~~~~ 167 (298)
T PLN02778 119 AHPLGSGIGFKEEDTPNFT----------------------------GSFYSKTKAMVEELLKNYE---NVCTLRVRMPI 167 (298)
T ss_pred CCCcccCCCCCcCCCCCCC----------------------------CCchHHHHHHHHHHHHHhh---ccEEeeecccC
Confidence 124554433221 1459999999999998875 46789999888
Q ss_pred CCCCCCchhHhhhhcCCceEEEEcc-----cCceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 442 PSFQEPVPGWVDSLNGPVGVLVASG-----KGVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 442 G~~~~p~p~~i~~~~~~~~~~~~~g-----~~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
|+.....+.|+..+.....+....+ .|++++++...+...+++||++++ .++|+.|+++.+.+.++.
T Consensus 168 ~~~~~~~~~fi~~~~~~~~~~~~~~s~~yv~D~v~al~~~l~~~~~g~yNigs~--~~iS~~el~~~i~~~~~~ 239 (298)
T PLN02778 168 SSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIYNFTNP--GVVSHNEILEMYRDYIDP 239 (298)
T ss_pred CcccccHHHHHHHHHcCCCeeEcCCCCEEHHHHHHHHHHHHhCCCCCeEEeCCC--CcccHHHHHHHHHHHhCC
Confidence 8754334567777654443322211 344444444333333469999988 689999999999999884
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-23 Score=214.97 Aligned_cols=211 Identities=20% Similarity=0.213 Sum_probs=166.1
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||++|.||+.|++.|. .+ ..|+.+.|.. .||+|++
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~---~~v~a~~~~~------------------------------------~Ditd~~ 40 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GE---FEVIATDRAE------------------------------------LDITDPD 40 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CC---ceEEeccCcc------------------------------------ccccChH
Confidence 459999999999999999987 33 5777776642 6888886
Q ss_pred CCCCHHHHHHHhc--CccEEEEccccCCcch---hHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC--ccc
Q psy11859 299 LGIKDSDLLMLQE--EVSVVFNGAASLKLEA---ELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ--KVL 371 (851)
Q Consensus 299 lgls~~~~~~~~~--~vd~ViH~AA~~~~~~---~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~--~~i 371 (851)
.+..++. ++|+|||+||++.++. .++.++.+|..|+.+|+++|.+.+ -.+||+||-||+... .+.
T Consensus 41 ------~v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~g--a~lVhiSTDyVFDG~~~~~Y 112 (281)
T COG1091 41 ------AVLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVG--ARLVHISTDYVFDGEKGGPY 112 (281)
T ss_pred ------HHHHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhC--CeEEEeecceEecCCCCCCC
Confidence 6666665 6899999999998863 567899999999999999999997 689999999997544 379
Q ss_pred ccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhH
Q psy11859 372 EEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGW 451 (851)
Q Consensus 372 ~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~ 451 (851)
.|++.+.|.+. ||.||+++|..+.++. -..+|+|.++|||..+..+..+
T Consensus 113 ~E~D~~~P~nv-----------------------------YG~sKl~GE~~v~~~~--~~~~I~Rtswv~g~~g~nFv~t 161 (281)
T COG1091 113 KETDTPNPLNV-----------------------------YGRSKLAGEEAVRAAG--PRHLILRTSWVYGEYGNNFVKT 161 (281)
T ss_pred CCCCCCCChhh-----------------------------hhHHHHHHHHHHHHhC--CCEEEEEeeeeecCCCCCHHHH
Confidence 99999999887 9999999999998874 5789999999999988776666
Q ss_pred hhh-hcCCceEEEEcc--------cCceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 452 VDS-LNGPVGVLVASG--------KGVVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 452 i~~-~~~~~~~~~~~g--------~~v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
+-+ ...+..+.+... .++++++..... ...+++||+++. ..+||.|+++.+.+.++.
T Consensus 162 ml~la~~~~~l~vv~Dq~gsPt~~~dlA~~i~~ll~~~~~~~~yH~~~~--g~~Swydfa~~I~~~~~~ 228 (281)
T COG1091 162 MLRLAKEGKELKVVDDQYGSPTYTEDLADAILELLEKEKEGGVYHLVNS--GECSWYEFAKAIFEEAGV 228 (281)
T ss_pred HHHHhhcCCceEEECCeeeCCccHHHHHHHHHHHHhccccCcEEEEeCC--CcccHHHHHHHHHHHhCC
Confidence 555 344444443322 234444433222 234559999987 458999999999999873
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-23 Score=227.92 Aligned_cols=237 Identities=18% Similarity=0.232 Sum_probs=165.3
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|++.| .+|++++|..... ...+.. +.+. ...++.++.+|++|++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~~~~~~~--~~~~~~---------~~~~---~~~~~~~~~~Dl~d~~ 63 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG---HDVVILDNLCNSK--RSVLPV---------IERL---GGKHPTFVEGDIRNEA 63 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC---CeEEEEecCCCch--HhHHHH---------HHHh---cCCCceEEEccCCCHH
Confidence 579999999999999999999998 6788877654332 111111 1100 0125678899999876
Q ss_pred CCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--cc
Q psy11859 299 LGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--VL 371 (851)
Q Consensus 299 lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~i 371 (851)
.+..+++ ++|+|||+||..... ..+.+.+++|+.|+.+|+++|++.+ +++||++||+.+|+... ++
T Consensus 64 ------~~~~~~~~~~~d~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~Ss~~~yg~~~~~~~ 136 (338)
T PRK10675 64 ------LLTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN-VKNLIFSSSATVYGDQPKIPY 136 (338)
T ss_pred ------HHHHHHhcCCCCEEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeccHHhhCCCCCCcc
Confidence 6666665 699999999976543 2456789999999999999999885 89999999998887542 56
Q ss_pred ccccCC-CCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC---CCCEEEEecccccCCCCC-
Q psy11859 372 EEKLYP-SPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT---KLPVVIVRPSIVLPSFQE- 446 (851)
Q Consensus 372 ~E~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~---~l~~~ivRp~~V~G~~~~- 446 (851)
+|+.+. .|.++ |+.||..+|++++.++. +++++++|+++|||+...
T Consensus 137 ~E~~~~~~p~~~-----------------------------Y~~sK~~~E~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~ 187 (338)
T PRK10675 137 VESFPTGTPQSP-----------------------------YGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSG 187 (338)
T ss_pred ccccCCCCCCCh-----------------------------hHHHHHHHHHHHHHHHHhcCCCcEEEEEeeeecCCCccc
Confidence 676543 34444 99999999999988753 789999999999997421
Q ss_pred -------C----chhHhhh-hcCCce-E-EEE------ccc---------CceeEEEeecC----CCCccEEEEeCCCCc
Q psy11859 447 -------P----VPGWVDS-LNGPVG-V-LVA------SGK---------GVVRSMILNDL----STETQVFNISSNEVE 493 (851)
Q Consensus 447 -------p----~p~~i~~-~~~~~~-~-~~~------~g~---------~v~~~~~~~~~----~~~~~iyni~~~~~~ 493 (851)
. +..++.. ..+..+ + +.+ .|. |+++++..+.+ ...+++||++++ +
T Consensus 188 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v~D~a~~~~~~~~~~~~~~~~~~~ni~~~--~ 265 (338)
T PRK10675 188 DMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVAAMEKLANKPGVHIYNLGAG--V 265 (338)
T ss_pred ccccCCCCChhHHHHHHHHHHhcCCCceEEeCCcCCCCCCcEEEeeEEHHHHHHHHHHHHHhhhccCCCceEEecCC--C
Confidence 1 1123333 222221 2 221 222 33332222221 123579999988 7
Q ss_pred cccHHHHHHHHHHHhhc
Q psy11859 494 AITWGEIISRGKQLIYQ 510 (851)
Q Consensus 494 ~~t~~el~~~~~~~~~~ 510 (851)
++|+.|+++.+.+..+.
T Consensus 266 ~~s~~e~~~~i~~~~g~ 282 (338)
T PRK10675 266 GSSVLDVVNAFSKACGK 282 (338)
T ss_pred ceeHHHHHHHHHHHhCC
Confidence 89999999999999885
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-23 Score=225.69 Aligned_cols=214 Identities=21% Similarity=0.257 Sum_probs=147.6
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+||||||+||||++|++.|.+.+ ..|+.+.|. ..|++|.+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~---~~v~~~~r~------------------------------------~~dl~d~~ 41 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERG---YEVIATSRS------------------------------------DLDLTDPE 41 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTS---EEEEEESTT------------------------------------CS-TTSHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCC---CEEEEeCch------------------------------------hcCCCCHH
Confidence 789999999999999999999876 677777554 35677665
Q ss_pred CCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC--ccc
Q psy11859 299 LGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ--KVL 371 (851)
Q Consensus 299 lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~--~~i 371 (851)
.+..+++ ++|+|||+||..+.+ .+++.++++|+.++.+|+++|.+.+ .++||+||.+|+... .++
T Consensus 42 ------~~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~--~~li~~STd~VFdG~~~~~y 113 (286)
T PF04321_consen 42 ------AVAKLLEAFKPDVVINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERG--ARLIHISTDYVFDGDKGGPY 113 (286)
T ss_dssp ------HHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT---EEEEEEEGGGS-SSTSSSB
T ss_pred ------HHHHHHHHhCCCeEeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcC--CcEEEeeccEEEcCCccccc
Confidence 6666654 699999999998775 4678999999999999999999886 599999999998554 368
Q ss_pred ccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhH
Q psy11859 372 EEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGW 451 (851)
Q Consensus 372 ~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~ 451 (851)
.|++.+.|.+. ||.||+.+|+.+++... ..+|+|++.|||+....+..|
T Consensus 114 ~E~d~~~P~~~-----------------------------YG~~K~~~E~~v~~~~~--~~~IlR~~~~~g~~~~~~~~~ 162 (286)
T PF04321_consen 114 TEDDPPNPLNV-----------------------------YGRSKLEGEQAVRAACP--NALILRTSWVYGPSGRNFLRW 162 (286)
T ss_dssp -TTS----SSH-----------------------------HHHHHHHHHHHHHHH-S--SEEEEEE-SEESSSSSSHHHH
T ss_pred ccCCCCCCCCH-----------------------------HHHHHHHHHHHHHHhcC--CEEEEecceecccCCCchhhh
Confidence 99988888877 99999999999998654 899999999999966665555
Q ss_pred h-hhhcCCceEEEEcc--------cCceeEEEeecCC-----CCccEEEEeCCCCccccHHHHHHHHHHHhhcCC
Q psy11859 452 V-DSLNGPVGVLVASG--------KGVVRSMILNDLS-----TETQVFNISSNEVEAITWGEIISRGKQLIYQYP 512 (851)
Q Consensus 452 i-~~~~~~~~~~~~~g--------~~v~~~~~~~~~~-----~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~p 512 (851)
+ +.+..+..+.+... .++++.+....+. ...++||++++ +.+|+.|+++.+.+.++..+
T Consensus 163 ~~~~~~~~~~i~~~~d~~~~p~~~~dlA~~i~~l~~~~~~~~~~~Giyh~~~~--~~~S~~e~~~~i~~~~~~~~ 235 (286)
T PF04321_consen 163 LLRRLRQGEPIKLFDDQYRSPTYVDDLARVILELIEKNLSGASPWGIYHLSGP--ERVSRYEFAEAIAKILGLDP 235 (286)
T ss_dssp HHHHHHCTSEEEEESSCEE--EEHHHHHHHHHHHHHHHHH-GGG-EEEE---B--S-EEHHHHHHHHHHHHTHCT
T ss_pred HHHHHhcCCeeEeeCCceeCCEEHHHHHHHHHHHHHhcccccccceeEEEecC--cccCHHHHHHHHHHHhCCCC
Confidence 5 44555555544421 1222222221111 23589999998 67999999999999998755
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-23 Score=268.50 Aligned_cols=270 Identities=21% Similarity=0.239 Sum_probs=184.3
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhC-CCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSC-PDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g-~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
.++|||||||||||++|+++|++.+ +.+.+|++++|........+|+.+...... + ..+....+++++.||+++
T Consensus 971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~---~--~~~~~~~~i~~~~gDl~~ 1045 (1389)
T TIGR03443 971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYG---I--WDEEWASRIEVVLGDLSK 1045 (1389)
T ss_pred CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhC---C--CchhhhcceEEEeccCCC
Confidence 5899999999999999999999875 235789999998765555555543221110 0 011223489999999999
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCccc--ccc
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVL--EEK 374 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i--~E~ 374 (851)
+.|||+.+.+..+..++|+|||+||.+++..++......||.||.+++++|.+.+ +++|+|+||+.+++..... .++
T Consensus 1046 ~~lgl~~~~~~~l~~~~d~iiH~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~v~vSS~~v~~~~~~~~~~~~ 1124 (1389)
T TIGR03443 1046 EKFGLSDEKWSDLTNEVDVIIHNGALVHWVYPYSKLRDANVIGTINVLNLCAEGK-AKQFSFVSSTSALDTEYYVNLSDE 1124 (1389)
T ss_pred ccCCcCHHHHHHHHhcCCEEEECCcEecCccCHHHHHHhHHHHHHHHHHHHHhCC-CceEEEEeCeeecCcccccchhhh
Confidence 9999999999999999999999999999887877777899999999999998874 8999999999888643211 000
Q ss_pred cCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCC---chh
Q psy11859 375 LYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-KLPVVIVRPSIVLPSFQEP---VPG 450 (851)
Q Consensus 375 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-~l~~~ivRp~~V~G~~~~p---~p~ 450 (851)
....+... .+++. .........+++|+.||++||+++..+.. +++++|+|||+|+|+...+ ...
T Consensus 1125 ~~~~~~~~---------~~e~~---~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~~g~~~~i~Rpg~v~G~~~~g~~~~~~ 1192 (1389)
T TIGR03443 1125 LVQAGGAG---------IPESD---DLMGSSKGLGTGYGQSKWVAEYIIREAGKRGLRGCIVRPGYVTGDSKTGATNTDD 1192 (1389)
T ss_pred hhhccCCC---------CCccc---ccccccccCCCChHHHHHHHHHHHHHHHhCCCCEEEECCCccccCCCcCCCCchh
Confidence 00000000 00000 00001123457899999999999988765 9999999999999997654 222
Q ss_pred Hhhhh------cCCce-----EEEEcccCceeEEEeecC-C---CCccEEEEeCCCCccccHHHHHHHHHHH
Q psy11859 451 WVDSL------NGPVG-----VLVASGKGVVRSMILNDL-S---TETQVFNISSNEVEAITWGEIISRGKQL 507 (851)
Q Consensus 451 ~i~~~------~~~~~-----~~~~~g~~v~~~~~~~~~-~---~~~~iyni~~~~~~~~t~~el~~~~~~~ 507 (851)
|+..+ .+..+ ..+...+++++++..... . ..+.+||++++ .+++|.++++.+.+.
T Consensus 1193 ~~~~~~~~~~~~~~~p~~~~~~~~~~Vddva~ai~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~~~ 1262 (1389)
T TIGR03443 1193 FLLRMLKGCIQLGLIPNINNTVNMVPVDHVARVVVAAALNPPKESELAVAHVTGH--PRIRFNDFLGTLKTY 1262 (1389)
T ss_pred HHHHHHHHHHHhCCcCCCCCccccccHHHHHHHHHHHHhCCcccCCCCEEEeCCC--CCCcHHHHHHHHHHh
Confidence 32221 11111 111112334444333221 1 23469999888 679999999999765
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=215.43 Aligned_cols=234 Identities=22% Similarity=0.283 Sum_probs=164.4
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcC
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANL 299 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~l 299 (851)
+|||||||||||++|+++|++.+ .+|+++.|..... .+++..+ . ...+++++.+|+.+++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g---~~V~~~~~~~~~~--~~~~~~~---------~-----~~~~~~~~~~D~~~~~- 60 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG---HEVVVLDNLSNGS--PEALKRG---------E-----RITRVTFVEGDLRDRE- 60 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC---CeEEEEeCCCccc--hhhhhhh---------c-----cccceEEEECCCCCHH-
Confidence 58999999999999999999998 5677776643321 1111110 0 0115788999999886
Q ss_pred CCCHHHHHHHhc--CccEEEEccccCCcch---hHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--ccc
Q psy11859 300 GIKDSDLLMLQE--EVSVVFNGAASLKLEA---ELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--VLE 372 (851)
Q Consensus 300 gls~~~~~~~~~--~vd~ViH~AA~~~~~~---~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~i~ 372 (851)
++..+++ ++|+|||+||...... .+.+.++.|+.|+.+++++|.+.+ +++||++||.++++... +++
T Consensus 61 -----~~~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~ss~~~~g~~~~~~~~ 134 (328)
T TIGR01179 61 -----LLDRLFEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTG-VKKFIFSSSAAVYGEPSSIPIS 134 (328)
T ss_pred -----HHHHHHHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcC-CCEEEEecchhhcCCCCCCCcc
Confidence 6666665 7999999999765432 345778999999999999998875 78999999988877543 566
Q ss_pred cccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh---CCCCEEEEecccccCCCCCC--
Q psy11859 373 EKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK---TKLPVVIVRPSIVLPSFQEP-- 447 (851)
Q Consensus 373 E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~---~~l~~~ivRp~~V~G~~~~p-- 447 (851)
|+.+..|.++ |+.+|+.+|+++..++ .+++++|+||++|||+..++
T Consensus 135 e~~~~~~~~~-----------------------------y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~ 185 (328)
T TIGR01179 135 EDSPLGPINP-----------------------------YGRSKLMSERILRDLSKADPGLSYVILRYFNVAGADPEGTI 185 (328)
T ss_pred ccCCCCCCCc-----------------------------hHHHHHHHHHHHHHHHHhccCCCEEEEecCcccCCCCCCcc
Confidence 7665554444 9999999999998774 48999999999999986432
Q ss_pred ----------chhHhhhhcCC-ceEEE-E------cc---------cCceeEEEeecC----CCCccEEEEeCCCCcccc
Q psy11859 448 ----------VPGWVDSLNGP-VGVLV-A------SG---------KGVVRSMILNDL----STETQVFNISSNEVEAIT 496 (851)
Q Consensus 448 ----------~p~~i~~~~~~-~~~~~-~------~g---------~~v~~~~~~~~~----~~~~~iyni~~~~~~~~t 496 (851)
++.+.....+. ..+.. + .| .|+++++..... ...+++||++++ .++|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~D~a~~~~~~~~~~~~~~~~~~~n~~~~--~~~s 263 (328)
T TIGR01179 186 GEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMDLADAHLAALEYLLNGGESHVYNLGYG--QGFS 263 (328)
T ss_pred ccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeeeeHHHHHHHHHHHHhhhhcCCCcceEEcCCC--Cccc
Confidence 22222222221 21111 1 11 222222221111 235689999988 6899
Q ss_pred HHHHHHHHHHHhhc
Q psy11859 497 WGEIISRGKQLIYQ 510 (851)
Q Consensus 497 ~~el~~~~~~~~~~ 510 (851)
+.|+++.+.+.+|.
T Consensus 264 ~~ei~~~~~~~~g~ 277 (328)
T TIGR01179 264 VLEVIEAFKKVSGV 277 (328)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999999885
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >KOG2462|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.3e-24 Score=213.82 Aligned_cols=127 Identities=27% Similarity=0.370 Sum_probs=115.9
Q ss_pred eccceeecCCccccchhhhhhhcccccCC---cccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCc
Q psy11859 688 FFVIFTQILPAYLVDFIMVLIRQKTFENL---VRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRS 764 (851)
Q Consensus 688 ~~~~~~c~~c~~~~~~~~~l~~h~~~h~~---~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~ 764 (851)
....|+|..|++.+++-++|.+|+++|.. .+.+.| +.|||.|.....|+.|+++|+ -|++|. .|||.|.+.
T Consensus 127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C--~~C~K~YvSmpALkMHirTH~--l~c~C~--iCGKaFSRP 200 (279)
T KOG2462|consen 127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSC--KYCGKVYVSMPALKMHIRTHT--LPCECG--ICGKAFSRP 200 (279)
T ss_pred cCCceeccccccccccccccchhhcccccccccccccC--CCCCceeeehHHHhhHhhccC--CCcccc--cccccccch
Confidence 44567899999999999999999999964 678999 889999999999999999997 689998 999999999
Q ss_pred hhHHHhhhhcCCCCCccCCCCCCccccccccCCcccccCcccccccccCCCCCCccChHHHHHHHHhhcCCcchhhhhhH
Q psy11859 765 DELSRHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVHERQKYKMMMKSM 844 (851)
Q Consensus 765 ~~L~~H~r~H~gekp~~C~~Cgk~f~~~~~~~~H~~~C~k~f~~~~~~~~~~~pf~Ck~~L~~H~r~Htgek~~~C~~c~ 844 (851)
--|+-|+|+|||||||.|+.|+|.|+- +++|+-||++|++.|+|+|..||
T Consensus 201 WLLQGHiRTHTGEKPF~C~hC~kAFAD------------------------------RSNLRAHmQTHS~~K~~qC~~C~ 250 (279)
T KOG2462|consen 201 WLLQGHIRTHTGEKPFSCPHCGKAFAD------------------------------RSNLRAHMQTHSDVKKHQCPRCG 250 (279)
T ss_pred HHhhcccccccCCCCccCCcccchhcc------------------------------hHHHHHHHHhhcCCccccCcchh
Confidence 999999999999999999999997654 35999999999999999999999
Q ss_pred HhhhcC
Q psy11859 845 RKMKNK 850 (851)
Q Consensus 845 ~~f~~k 850 (851)
|.|+.|
T Consensus 251 KsFsl~ 256 (279)
T KOG2462|consen 251 KSFALK 256 (279)
T ss_pred hHHHHH
Confidence 999864
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-22 Score=220.43 Aligned_cols=213 Identities=20% Similarity=0.226 Sum_probs=155.0
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|++.| .+|++++|..... ..+. ..+++++.||++|++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g---~~V~~l~R~~~~~---~~l~------------------~~~v~~v~~Dl~d~~ 56 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG---YQVRCLVRNLRKA---SFLK------------------EWGAELVYGDLSLPE 56 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CeEEEEEcChHHh---hhHh------------------hcCCEEEECCCCCHH
Confidence 589999999999999999999998 6899999974321 1110 126889999999987
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccCCC
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPS 378 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~~~ 378 (851)
++..+++++|+|||+++.. ..++....++|+.|+.+++++|++.+ +++|||+||..+.. .
T Consensus 57 ------~l~~al~g~d~Vi~~~~~~--~~~~~~~~~~~~~~~~~l~~aa~~~g-vkr~I~~Ss~~~~~-----------~ 116 (317)
T CHL00194 57 ------TLPPSFKGVTAIIDASTSR--PSDLYNAKQIDWDGKLALIEAAKAAK-IKRFIFFSILNAEQ-----------Y 116 (317)
T ss_pred ------HHHHHHCCCCEEEECCCCC--CCCccchhhhhHHHHHHHHHHHHHcC-CCEEEEeccccccc-----------c
Confidence 8888999999999988643 22344578899999999999999986 99999999953210 1
Q ss_pred CCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhHhhhhcCC
Q psy11859 379 PVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDSLNGP 458 (851)
Q Consensus 379 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~i~~~~~~ 458 (851)
+..+ |..+|..+|.++.+ .+++++|+||+.+|+..- +.+...+..+
T Consensus 117 ~~~~-----------------------------~~~~K~~~e~~l~~--~~l~~tilRp~~~~~~~~---~~~~~~~~~~ 162 (317)
T CHL00194 117 PYIP-----------------------------LMKLKSDIEQKLKK--SGIPYTIFRLAGFFQGLI---SQYAIPILEK 162 (317)
T ss_pred CCCh-----------------------------HHHHHHHHHHHHHH--cCCCeEEEeecHHhhhhh---hhhhhhhccC
Confidence 1223 88999999998865 389999999998886421 1111111111
Q ss_pred ceEEEEcc---------cCceeEEEeecC--CCCccEEEEeCCCCccccHHHHHHHHHHHhhcC
Q psy11859 459 VGVLVASG---------KGVVRSMILNDL--STETQVFNISSNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 459 ~~~~~~~g---------~~v~~~~~~~~~--~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
.+..+..+ +|+++++....+ ...+++||++++ +++|+.|+++.+.+..|..
T Consensus 163 ~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~~~~~~ni~g~--~~~s~~el~~~~~~~~g~~ 224 (317)
T CHL00194 163 QPIWITNESTPISYIDTQDAAKFCLKSLSLPETKNKTFPLVGP--KSWNSSEIISLCEQLSGQK 224 (317)
T ss_pred CceEecCCCCccCccCHHHHHHHHHHHhcCccccCcEEEecCC--CccCHHHHHHHHHHHhCCC
Confidence 22222222 355555443332 235789999998 6899999999999998863
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-21 Score=218.80 Aligned_cols=226 Identities=23% Similarity=0.266 Sum_probs=162.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
.++++|||||||||||++++++|++.| ..|++++|...+........++ ....++++++.+|++
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G---~~V~~l~R~~~~~~~~~~~~~~-------------~~~~~~v~~v~~Dl~ 121 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRG---YNVVAVAREKSGIRGKNGKEDT-------------KKELPGAEVVFGDVT 121 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEEechhhccccchhhHH-------------hhhcCCceEEEeeCC
Confidence 567899999999999999999999998 6899999976442111000000 011237889999999
Q ss_pred CCcCCCCHHHHHHHhc----CccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCccc
Q psy11859 296 QANLGIKDSDLLMLQE----EVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVL 371 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~----~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i 371 (851)
|++ ++..+++ ++|+|||+||.... ...+.+++|+.|+.+++++|++.+ +++||++||.++++
T Consensus 122 d~~------~l~~~~~~~~~~~D~Vi~~aa~~~~--~~~~~~~vn~~~~~~ll~aa~~~g-v~r~V~iSS~~v~~----- 187 (390)
T PLN02657 122 DAD------SLRKVLFSEGDPVDVVVSCLASRTG--GVKDSWKIDYQATKNSLDAGREVG-AKHFVLLSAICVQK----- 187 (390)
T ss_pred CHH------HHHHHHHHhCCCCcEEEECCccCCC--CCccchhhHHHHHHHHHHHHHHcC-CCEEEEEeeccccC-----
Confidence 987 7777776 59999999985321 123557889999999999999885 89999999976532
Q ss_pred ccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhH
Q psy11859 372 EEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGW 451 (851)
Q Consensus 372 ~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~ 451 (851)
|.. .|..+|..+|..+.....+++++|+||+.+||+ ++++
T Consensus 188 -------p~~-----------------------------~~~~sK~~~E~~l~~~~~gl~~tIlRp~~~~~~----~~~~ 227 (390)
T PLN02657 188 -------PLL-----------------------------EFQRAKLKFEAELQALDSDFTYSIVRPTAFFKS----LGGQ 227 (390)
T ss_pred -------cch-----------------------------HHHHHHHHHHHHHHhccCCCCEEEEccHHHhcc----cHHH
Confidence 222 288999999999876345999999999999985 3445
Q ss_pred hhhhcCCceE-EEEccc----------CceeEEEeecC--CCCccEEEEeCCCCccccHHHHHHHHHHHhhcCC
Q psy11859 452 VDSLNGPVGV-LVASGK----------GVVRSMILNDL--STETQVFNISSNEVEAITWGEIISRGKQLIYQYP 512 (851)
Q Consensus 452 i~~~~~~~~~-~~~~g~----------~v~~~~~~~~~--~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~p 512 (851)
+..+..+.++ +++.|. |+++++..... ...+++||++++. .++|+.|+++.+.+.+|+.|
T Consensus 228 ~~~~~~g~~~~~~GdG~~~~~~~I~v~DlA~~i~~~~~~~~~~~~~~~Iggp~-~~~S~~Eia~~l~~~lG~~~ 300 (390)
T PLN02657 228 VEIVKDGGPYVMFGDGKLCACKPISEADLASFIADCVLDESKINKVLPIGGPG-KALTPLEQGEMLFRILGKEP 300 (390)
T ss_pred HHhhccCCceEEecCCcccccCceeHHHHHHHHHHHHhCccccCCEEEcCCCC-cccCHHHHHHHHHHHhCCCC
Confidence 5555444443 334332 22222222111 2356899998742 47999999999999998643
|
|
| >cd09071 FAR_C C-terminal domain of fatty acyl CoA reductases | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-22 Score=180.10 Aligned_cols=91 Identities=37% Similarity=0.695 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhccccccCeEEEcChhHHHHHHhcCccCCCccccccccCCHHHHHH
Q psy11859 538 TQILPAYLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLLALHDNISEKDKQTFYIANIDVNIDDYLK 617 (851)
Q Consensus 538 ~~~lpa~~~d~~~~l~G~~p~l~~~~~ki~~~~~~~~~f~~~~w~f~~~n~~~l~~~l~~~d~~~F~~d~~~i~W~~Y~~ 617 (851)
.|.+||+++|.++.+.|++|++.++++|+.+++++++||++++|.|+++|+++|++.|+++||++|+||+++|||++|+.
T Consensus 2 ~~~lpa~~~d~~~~l~g~~~~~~~~~~k~~~~~~~~~~Ft~~~w~F~~~n~~~L~~~l~~~Dr~~F~fD~~~idW~~Y~~ 81 (92)
T cd09071 2 LHLLPAYLLDLLLRLLGRKPRLLKLYRKIHKLLDLLEYFTTNEWRFDNDNTRALWERLSEEDRELFNFDIRSIDWDDYFE 81 (92)
T ss_pred cccchHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhccccCeEEeeCcHHHHHHHHCCHHHHHhCCCCCCCCCHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q psy11859 618 TIILGARQYCL 628 (851)
Q Consensus 618 ~~~~Girkyll 628 (851)
++++|+|+|++
T Consensus 82 ~~~~G~r~yll 92 (92)
T cd09071 82 NYIPGLRKYLL 92 (92)
T ss_pred HHHHHHHHHhC
Confidence 99999999985
|
C-terminal domain of fatty acyl CoA reductases, a family of SDR-like proteins. SDRs or short-chain dehydrogenases/reductases are Rossmann-fold NAD(P)H-binding proteins. Many proteins in this FAR_C family may function as fatty acyl-CoA reductases (FARs), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as the biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. The function of this C-terminal domain is unclear. |
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-21 Score=208.71 Aligned_cols=224 Identities=19% Similarity=0.167 Sum_probs=151.3
Q ss_pred EEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcCC
Q psy11859 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLG 300 (851)
Q Consensus 221 VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lg 300 (851)
|||||||||||++|++.|++.| .+|++++|......... ...+ .|+.. .
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~---------------------~~~~----~~~~~-~-- 49 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG---HEVTILTRSPPAGANTK---------------------WEGY----KPWAP-L-- 49 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC---CEEEEEeCCCCCCCccc---------------------ceee----ecccc-c--
Confidence 6999999999999999999987 78999999765421000 0011 12211 1
Q ss_pred CCHHHHHHHhcCccEEEEccccCCcc-----hhHHHHHHHHHHHHHHHHHHHHhcCC-ceEEEEeeeeeeeCCC--cccc
Q psy11859 301 IKDSDLLMLQEEVSVVFNGAASLKLE-----AELKENVAANTRGTQRLLDIALKMKK-LVAFIHFSTAFCHPDQ--KVLE 372 (851)
Q Consensus 301 ls~~~~~~~~~~vd~ViH~AA~~~~~-----~~~~~~~~~Nv~Gt~~ll~~a~~~~~-~~~fV~vSTa~~~~~~--~~i~ 372 (851)
.....+.++|+|||+||..... ....+.+++|+.||.+|+++|++.+. ...||++||+++|+.. .+++
T Consensus 50 ----~~~~~~~~~D~Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~ 125 (292)
T TIGR01777 50 ----AESEALEGADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFT 125 (292)
T ss_pred ----chhhhcCCCCEEEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcC
Confidence 2344567899999999976542 23456789999999999999998862 3578888888888753 3566
Q ss_pred cccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCCchhH
Q psy11859 373 EKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-KLPVVIVRPSIVLPSFQEPVPGW 451 (851)
Q Consensus 373 E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-~l~~~ivRp~~V~G~~~~p~p~~ 451 (851)
|+.++.|.+. |+..+...|..+..+.. +++++|+||++||||.+..++.+
T Consensus 126 E~~~~~~~~~-----------------------------~~~~~~~~e~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~ 176 (292)
T TIGR01777 126 EEDSPAGDDF-----------------------------LAELCRDWEEAAQAAEDLGTRVVLLRTGIVLGPKGGALAKM 176 (292)
T ss_pred cccCCCCCCh-----------------------------HHHHHHHHHHHhhhchhcCCceEEEeeeeEECCCcchhHHH
Confidence 7654433333 66777777877765544 89999999999999976444433
Q ss_pred hhhhcCCceEEEEcc---------cCceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 452 VDSLNGPVGVLVASG---------KGVVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 452 i~~~~~~~~~~~~~g---------~~v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
...+.......++.| +|+++++....+ ....++||++++ .++|+.|+++.+.+.++.
T Consensus 177 ~~~~~~~~~~~~g~~~~~~~~i~v~Dva~~i~~~l~~~~~~g~~~~~~~--~~~s~~di~~~i~~~~g~ 243 (292)
T TIGR01777 177 LPPFRLGLGGPLGSGRQWFSWIHIEDLVQLILFALENASISGPVNATAP--EPVRNKEFAKALARALHR 243 (292)
T ss_pred HHHHhcCcccccCCCCcccccEeHHHHHHHHHHHhcCcccCCceEecCC--CccCHHHHHHHHHHHhCC
Confidence 322211111112333 233333332222 234579999988 689999999999999874
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-20 Score=227.55 Aligned_cols=211 Identities=20% Similarity=0.220 Sum_probs=143.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
-+.|+|||||||||||++|++.|++.+. .|. +..+|++
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~---~v~---------------------------------------~~~~~l~ 415 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGI---AYE---------------------------------------YGKGRLE 415 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCC---eEE---------------------------------------eeccccc
Confidence 3567999999999999999999998773 331 1124566
Q ss_pred CCcCCCCHHHHHHHhc--CccEEEEccccCC---cc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCC
Q psy11859 296 QANLGIKDSDLLMLQE--EVSVVFNGAASLK---LE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPD 367 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~--~vd~ViH~AA~~~---~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~ 367 (851)
|++ .+...+. ++|+|||+||... ++ .++.+++++|+.||.+|+++|++.+ ++ +|++||.++++.
T Consensus 416 d~~------~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g-~~-~v~~Ss~~v~~~ 487 (668)
T PLN02260 416 DRS------SLLADIRNVKPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENG-LL-MMNFATGCIFEY 487 (668)
T ss_pred cHH------HHHHHHHhhCCCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcC-Ce-EEEEcccceecC
Confidence 554 4444443 7999999999874 32 3567889999999999999999986 65 677788777642
Q ss_pred --------CcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEeccc
Q psy11859 368 --------QKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSI 439 (851)
Q Consensus 368 --------~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~ 439 (851)
..++.|+..+.|. .|.||.||+++|+++..+. +..++|+++
T Consensus 488 ~~~~~~~~~~p~~E~~~~~~~----------------------------~~~Yg~sK~~~E~~~~~~~---~~~~~r~~~ 536 (668)
T PLN02260 488 DAKHPEGSGIGFKEEDKPNFT----------------------------GSFYSKTKAMVEELLREYD---NVCTLRVRM 536 (668)
T ss_pred CcccccccCCCCCcCCCCCCC----------------------------CChhhHHHHHHHHHHHhhh---hheEEEEEE
Confidence 1256666544332 1449999999999998874 567888888
Q ss_pred ccCCCCCCchhHhhhh-cCCceEEEEccc----CceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHHHHhh
Q psy11859 440 VLPSFQEPVPGWVDSL-NGPVGVLVASGK----GVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQLIY 509 (851)
Q Consensus 440 V~G~~~~p~p~~i~~~-~~~~~~~~~~g~----~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~~~~ 509 (851)
+||........|+..+ .....+.+..+. +++.++....+...+++||++++ .++||.|+++.+.+..+
T Consensus 537 ~~~~~~~~~~nfv~~~~~~~~~~~vp~~~~~~~~~~~~~~~l~~~~~~giyni~~~--~~~s~~e~a~~i~~~~~ 609 (668)
T PLN02260 537 PISSDLSNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNP--GVVSHNEILEMYKDYID 609 (668)
T ss_pred ecccCCCCccHHHHHHhccceeeccCCCceehhhHHHHHHHHHHhCCCceEEecCC--CcCcHHHHHHHHHHhcC
Confidence 8975432223455443 223223232221 12211122222334589999998 68999999999998764
|
|
| >KOG2462|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.8e-22 Score=199.21 Aligned_cols=125 Identities=22% Similarity=0.332 Sum_probs=114.5
Q ss_pred cCccCC-CCCCCCCceee---eeccceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhc
Q psy11859 670 TGLWYP-NGQIRSNRFWH---YFFVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHS 745 (851)
Q Consensus 670 ~~~~~~-~~~l~~h~~~h---~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~ 745 (851)
++|-|. .+.|..|+..| ...+.|.|+.|+|.+.+...|..|.++|+ -|++| ..|||.|.+..-|+.|+|+||
T Consensus 136 Cgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C--~iCGKaFSRPWLLQGHiRTHT 211 (279)
T KOG2462|consen 136 CGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCEC--GICGKAFSRPWLLQGHIRTHT 211 (279)
T ss_pred cccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCccc--ccccccccchHHhhccccccc
Confidence 334444 88899999999 34667899999999999999999999998 57888 899999999999999999999
Q ss_pred CCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCCCCccccccccCCccc
Q psy11859 746 GERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLLAILNCPHEA 800 (851)
Q Consensus 746 gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~Cgk~f~~~~~~~~H~~ 800 (851)
|||||.|. .|+|+|..+++|+.|+++|.+.|+|+|..|+|+|.+.+.|..|.+
T Consensus 212 GEKPF~C~--hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E 264 (279)
T KOG2462|consen 212 GEKPFSCP--HCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSE 264 (279)
T ss_pred CCCCccCC--cccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence 99999998 899999999999999999999999999999999999998888864
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=203.00 Aligned_cols=224 Identities=19% Similarity=0.216 Sum_probs=151.6
Q ss_pred CCCEEEEe----cCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 217 AGRSVLVT----GGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 217 ~~k~VlVT----GatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
..++|||| |||||||++|++.|++.| ++|++++|...... .+. ...+..+.+. ....++++.|
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G---~~V~~l~R~~~~~~---~~~----~~~~~~~~~l---~~~~v~~v~~ 117 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAG---HEVTLFTRGKEPSQ---KMK----KEPFSRFSEL---SSAGVKTVWG 117 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCC---CEEEEEecCCcchh---hhc----cCchhhhhHh---hhcCceEEEe
Confidence 34789999 999999999999999998 78999999864311 110 0001111000 0125889999
Q ss_pred CCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--c
Q psy11859 293 DILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--V 370 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~ 370 (851)
|+.|.. +.. ...++|+|||+++. ++.++.+|+++|++.+ +++|||+||+.+|+... +
T Consensus 118 D~~d~~------~~~-~~~~~d~Vi~~~~~-------------~~~~~~~ll~aa~~~g-vkr~V~~SS~~vyg~~~~~p 176 (378)
T PLN00016 118 DPADVK------SKV-AGAGFDVVYDNNGK-------------DLDEVEPVADWAKSPG-LKQFLFCSSAGVYKKSDEPP 176 (378)
T ss_pred cHHHHH------hhh-ccCCccEEEeCCCC-------------CHHHHHHHHHHHHHcC-CCEEEEEccHhhcCCCCCCC
Confidence 998621 111 23579999999763 2457899999999885 99999999999887642 3
Q ss_pred cccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCC--c
Q psy11859 371 LEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEP--V 448 (851)
Q Consensus 371 i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p--~ 448 (851)
..|+. +..| +. +|+.+|.++.+. +++++|+||++||||+... .
T Consensus 177 ~~E~~---~~~p-----------------------------~~-sK~~~E~~l~~~--~l~~~ilRp~~vyG~~~~~~~~ 221 (378)
T PLN00016 177 HVEGD---AVKP-----------------------------KA-GHLEVEAYLQKL--GVNWTSFRPQYIYGPGNNKDCE 221 (378)
T ss_pred CCCCC---cCCC-----------------------------cc-hHHHHHHHHHHc--CCCeEEEeceeEECCCCCCchH
Confidence 33322 1222 23 899999988653 8999999999999997643 3
Q ss_pred hhHhhhhcCCceEEE-Eccc---------CceeEEEeecC--CCCccEEEEeCCCCccccHHHHHHHHHHHhhcC
Q psy11859 449 PGWVDSLNGPVGVLV-ASGK---------GVVRSMILNDL--STETQVFNISSNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 449 p~~i~~~~~~~~~~~-~~g~---------~v~~~~~~~~~--~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
+.++..+..+.++.+ +.|. |+++++..... ...+++||++++ .++|+.|+++.+.+..|..
T Consensus 222 ~~~~~~~~~~~~i~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~~~~~yni~~~--~~~s~~el~~~i~~~~g~~ 294 (378)
T PLN00016 222 EWFFDRLVRGRPVPIPGSGIQLTQLGHVKDLASMFALVVGNPKAAGQIFNIVSD--RAVTFDGMAKACAKAAGFP 294 (378)
T ss_pred HHHHHHHHcCCceeecCCCCeeeceecHHHHHHHHHHHhcCccccCCEEEecCC--CccCHHHHHHHHHHHhCCC
Confidence 345555544444333 3332 33333322222 234689999988 6899999999999998863
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=213.65 Aligned_cols=197 Identities=16% Similarity=0.135 Sum_probs=147.5
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|++.| +.|++++|..... ....++++.+|++++
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G---~~Vi~ldr~~~~~------------------------~~~~ve~v~~Dl~d~- 52 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG---HTVSGIAQHPHDA------------------------LDPRVDYVCASLRNP- 52 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEEeCChhhc------------------------ccCCceEEEccCCCH-
Confidence 579999999999999999999998 6888998853210 013678999999987
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccCCC
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPS 378 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~~~ 378 (851)
.+..++.++|+|||+|+.... ....+|+.||.||+++|++.+ + ++||+||++ |..
T Consensus 53 ------~l~~al~~~D~VIHLAa~~~~-----~~~~vNv~Gt~nLleAA~~~G-v-RiV~~SS~~--G~~---------- 107 (699)
T PRK12320 53 ------VLQELAGEADAVIHLAPVDTS-----APGGVGITGLAHVANAAARAG-A-RLLFVSQAA--GRP---------- 107 (699)
T ss_pred ------HHHHHhcCCCEEEEcCccCcc-----chhhHHHHHHHHHHHHHHHcC-C-eEEEEECCC--CCC----------
Confidence 345667789999999986421 123589999999999999986 5 699999964 210
Q ss_pred CCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCC-----chhHhh
Q psy11859 379 PVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEP-----VPGWVD 453 (851)
Q Consensus 379 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p-----~p~~i~ 453 (851)
..|. .+|.++..+ +++++|+|+++||||...+ ++.++.
T Consensus 108 -------------------------------~~~~----~aE~ll~~~--~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~ 150 (699)
T PRK12320 108 -------------------------------ELYR----QAETLVSTG--WAPSLVIRIAPPVGRQLDWMVCRTVATLLR 150 (699)
T ss_pred -------------------------------cccc----HHHHHHHhc--CCCEEEEeCceecCCCCcccHhHHHHHHHH
Confidence 0032 377776543 5899999999999997654 444454
Q ss_pred hhcCCceEEEEcccCceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHHHH
Q psy11859 454 SLNGPVGVLVASGKGVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQL 507 (851)
Q Consensus 454 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~~ 507 (851)
+...+.++.+.+.+|+++++....+...+++||++++ ..+|+.|+++.+...
T Consensus 151 ~~~~~~pI~vIyVdDvv~alv~al~~~~~GiyNIG~~--~~~Si~el~~~i~~~ 202 (699)
T PRK12320 151 SKVSARPIRVLHLDDLVRFLVLALNTDRNGVVDLATP--DTTNVVTAWRLLRSV 202 (699)
T ss_pred HHHcCCceEEEEHHHHHHHHHHHHhCCCCCEEEEeCC--CeeEHHHHHHHHHHh
Confidence 4444556666677888888766555444469999999 679999998888765
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-19 Score=213.02 Aligned_cols=190 Identities=21% Similarity=0.214 Sum_probs=143.8
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|++.| .+|++++|..... ...++.++.+|++|++
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G---~~Vv~l~R~~~~~------------------------~~~~v~~v~gDL~D~~ 53 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQG---HEVVGIARHRPDS------------------------WPSSADFIAADIRDAT 53 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc---CEEEEEECCchhh------------------------cccCceEEEeeCCCHH
Confidence 579999999999999999999998 6888888864210 0125788999999886
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccCCC
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPS 378 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~~~ 378 (851)
++..+++++|+|||+||.... ..++|+.||.+++++|++.+ +++||++||.
T Consensus 54 ------~l~~al~~vD~VVHlAa~~~~------~~~vNv~GT~nLLeAa~~~g-vkr~V~iSS~---------------- 104 (854)
T PRK05865 54 ------AVESAMTGADVVAHCAWVRGR------NDHINIDGTANVLKAMAETG-TGRIVFTSSG---------------- 104 (854)
T ss_pred ------HHHHHHhCCCEEEECCCcccc------hHHHHHHHHHHHHHHHHHcC-CCeEEEECCc----------------
Confidence 788888899999999986532 46899999999999999885 8999999992
Q ss_pred CCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhHhhhhcCC
Q psy11859 379 PVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDSLNGP 458 (851)
Q Consensus 379 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~i~~~~~~ 458 (851)
+ |..+|+++.++ +++++|+||++||||+ ++.|+..+...
T Consensus 105 ----------------------------------~--K~aaE~ll~~~--gl~~vILRp~~VYGP~---~~~~i~~ll~~ 143 (854)
T PRK05865 105 ----------------------------------H--QPRVEQMLADC--GLEWVAVRCALIFGRN---VDNWVQRLFAL 143 (854)
T ss_pred ----------------------------------H--HHHHHHHHHHc--CCCEEEEEeceEeCCC---hHHHHHHHhcC
Confidence 1 88899988653 8999999999999996 34555553221
Q ss_pred ceE---------EEEcccCceeEEEeecC--CCCccEEEEeCCCCccccHHHHHHHHHHH
Q psy11859 459 VGV---------LVASGKGVVRSMILNDL--STETQVFNISSNEVEAITWGEIISRGKQL 507 (851)
Q Consensus 459 ~~~---------~~~~g~~v~~~~~~~~~--~~~~~iyni~~~~~~~~t~~el~~~~~~~ 507 (851)
... -+.+.+|+++++....+ ...+++||++++ .++|+.|+++.+.+.
T Consensus 144 ~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~~~~~~ggvyNIgsg--~~~Si~EIae~l~~~ 201 (854)
T PRK05865 144 PVLPAGYADRVVQVVHSDDAQRLLVRALLDTVIDSGPVNLAAP--GELTFRRIAAALGRP 201 (854)
T ss_pred ceeccCCCCceEeeeeHHHHHHHHHHHHhCCCcCCCeEEEECC--CcccHHHHHHHHhhh
Confidence 111 11222344444433322 224679999998 679999999988764
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-18 Score=187.38 Aligned_cols=224 Identities=16% Similarity=0.186 Sum_probs=152.6
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
.|+||||||+||||++|+++|++.| .+|.++.|... ++.+ +... ...++.++.+|++|+
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g---~~v~~~~r~~~------~~~~---------~~~~---~~~~~~~~~~D~~~~ 60 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARG---DRVAATVRRPD------ALDD---------LKAR---YGDRLWVLQLDVTDS 60 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHH---------HHHh---ccCceEEEEccCCCH
Confidence 4789999999999999999999998 68888888632 2221 1111 123688999999998
Q ss_pred cCCCCHHHHHHHh-------cCccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHH----HhcCCceEEEEe
Q psy11859 298 NLGIKDSDLLMLQ-------EEVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIA----LKMKKLVAFIHF 359 (851)
Q Consensus 298 ~lgls~~~~~~~~-------~~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a----~~~~~~~~fV~v 359 (851)
+ ++..++ .++|+|||+||..... +.+...+++|+.|+.++++++ ++. +..+||++
T Consensus 61 ~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~iv~~ 133 (276)
T PRK06482 61 A------AVRAVVDRAFAALGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQ-GGGRIVQV 133 (276)
T ss_pred H------HHHHHHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEE
Confidence 6 454433 3589999999976432 345677899999999999998 333 36799999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..+... ..+. +.|+.||+..|.+++.++. ++++++
T Consensus 134 sS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~ 175 (276)
T PRK06482 134 SSEGGQIA---------YPGF-----------------------------SLYHATKWGIEGFVEAVAQEVAPFGIEFTI 175 (276)
T ss_pred cCcccccC---------CCCC-----------------------------chhHHHHHHHHHHHHHHHHHhhccCcEEEE
Confidence 99643211 1122 3499999999998876642 899999
Q ss_pred Eecccc---cCCCCCC-----------chhHhhhhcCCceEEEEcccCceeEEEeecC-CCCccEEEEeCCCCccccHHH
Q psy11859 435 VRPSIV---LPSFQEP-----------VPGWVDSLNGPVGVLVASGKGVVRSMILNDL-STETQVFNISSNEVEAITWGE 499 (851)
Q Consensus 435 vRp~~V---~G~~~~p-----------~p~~i~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~e 499 (851)
+|||.+ +|+.... ...+...+..+...+.+++.++++++..... ...+..||++++ +..+..|
T Consensus 176 v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~a~~~~~~~~~~~~~~~~g~~--~~~~~~~ 253 (276)
T PRK06482 176 VEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALADGSFAIPGDPQKMVQAMIASADQTPAPRRLTLGSD--AYASIRA 253 (276)
T ss_pred EeCCccccCCcccccccCCCccccchhhHHHHHHHhhccCCCCCCHHHHHHHHHHHHcCCCCCeEEecChH--HHHHHHH
Confidence 999988 5543221 1112222333332333555667666555444 234567999998 5677777
Q ss_pred HHHHHHHHhh
Q psy11859 500 IISRGKQLIY 509 (851)
Q Consensus 500 l~~~~~~~~~ 509 (851)
++..+.+...
T Consensus 254 ~~~~~~~~~~ 263 (276)
T PRK06482 254 ALSERLAALE 263 (276)
T ss_pred HHHHHHHHHH
Confidence 7776666543
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-17 Score=170.96 Aligned_cols=221 Identities=19% Similarity=0.200 Sum_probs=158.7
Q ss_pred EEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcCC
Q psy11859 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLG 300 (851)
Q Consensus 221 VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lg 300 (851)
|+|||||||||++|+..|.+.| +.|++|.|...... +++ ...+..+ |
T Consensus 1 IliTGgTGlIG~~L~~~L~~~g---h~v~iltR~~~~~~--~~~-------------------~~~v~~~--~------- 47 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGG---HQVTILTRRPPKAS--QNL-------------------HPNVTLW--E------- 47 (297)
T ss_pred CeEeccccchhHHHHHHHHhCC---CeEEEEEcCCcchh--hhc-------------------Ccccccc--c-------
Confidence 6899999999999999999998 78999999876531 100 0111111 1
Q ss_pred CCHHHHHHHhc-CccEEEEccccCCcc----hhH-HHHHHHHHHHHHHHHHHHHhcC-CceEEEEeeeeeeeCCCc--cc
Q psy11859 301 IKDSDLLMLQE-EVSVVFNGAASLKLE----AEL-KENVAANTRGTQRLLDIALKMK-KLVAFIHFSTAFCHPDQK--VL 371 (851)
Q Consensus 301 ls~~~~~~~~~-~vd~ViH~AA~~~~~----~~~-~~~~~~Nv~Gt~~ll~~a~~~~-~~~~fV~vSTa~~~~~~~--~i 371 (851)
.+..+.. ++|+|||+|+..-+. ... ++..+.-+.+|+.|+++..+.. +++.||..|.+.-||+.. .+
T Consensus 48 ----~~~~~~~~~~DavINLAG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~ 123 (297)
T COG1090 48 ----GLADALTLGIDAVINLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVV 123 (297)
T ss_pred ----hhhhcccCCCCEEEECCCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceee
Confidence 2222333 799999999975443 333 3567889999999999988543 478899989887777654 67
Q ss_pred ccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCCchh
Q psy11859 372 EEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-KLPVVIVRPSIVLPSFQEPVPG 450 (851)
Q Consensus 372 ~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-~l~~~ivRp~~V~G~~~~p~p~ 450 (851)
+|+. +.+.+. -+..=..-|.....+.. +..++++|.|+|.|+.+..++.
T Consensus 124 tE~~-~~g~~F-----------------------------la~lc~~WE~~a~~a~~~gtRvvllRtGvVLs~~GGaL~~ 173 (297)
T COG1090 124 TEES-PPGDDF-----------------------------LAQLCQDWEEEALQAQQLGTRVVLLRTGVVLSPDGGALGK 173 (297)
T ss_pred ecCC-CCCCCh-----------------------------HHHHHHHHHHHHhhhhhcCceEEEEEEEEEecCCCcchhh
Confidence 7773 233333 23333445777777666 9999999999999999888777
Q ss_pred HhhhhcCCceEEEEcccCceeEEEeecC----------CCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 451 WVDSLNGPVGVLVASGKGVVRSMILNDL----------STETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 451 ~i~~~~~~~~~~~~~g~~v~~~~~~~~~----------~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
++.-+.-+.+--+|+|+-....++.++. ....+.||++++ +|++..++...+.+..++
T Consensus 174 m~~~fk~glGG~~GsGrQ~~SWIhieD~v~~I~fll~~~~lsGp~N~taP--~PV~~~~F~~al~r~l~R 241 (297)
T COG1090 174 MLPLFKLGLGGKLGSGRQWFSWIHIEDLVNAILFLLENEQLSGPFNLTAP--NPVRNKEFAHALGRALHR 241 (297)
T ss_pred hcchhhhccCCccCCCCceeeeeeHHHHHHHHHHHHhCcCCCCcccccCC--CcCcHHHHHHHHHHHhCC
Confidence 7776655555566777655555554432 355679999999 999999999999999774
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-17 Score=173.55 Aligned_cols=215 Identities=17% Similarity=0.173 Sum_probs=141.3
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++++||||||+||||++++++|++.| .+|++++|.... ..+.+.. .+... ....+.++.+|+++
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g---~~v~~~~r~~~~--~~~~~~~--------~~~~~---~~~~~~~~~~Dl~~ 68 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAG---YRVAIHYHRSAA--EADALAA--------ELNAL---RPGSAAALQADLLD 68 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEcCCCHH--HHHHHHH--------HHHhh---cCCceEEEEcCCCC
Confidence 56899999999999999999999988 688998886432 1111111 11111 11357899999998
Q ss_pred CcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEee
Q psy11859 297 ANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM--KKLVAFIHFS 360 (851)
Q Consensus 297 ~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~--~~~~~fV~vS 360 (851)
.+ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++... ..-..++.+|
T Consensus 69 ~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~ 142 (249)
T PRK09135 69 PD------ALPELVAACVAAFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNIT 142 (249)
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEe
Confidence 76 5555443 58999999996431 2346678999999999999999642 1123455555
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----CCCEEEEe
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----KLPVVIVR 436 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----~l~~~ivR 436 (851)
+.. +..+..|.+ .|+.||+.+|.+++.++. +++++++|
T Consensus 143 ~~~---------~~~~~~~~~-----------------------------~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~ 184 (249)
T PRK09135 143 DIH---------AERPLKGYP-----------------------------VYCAAKAALEMLTRSLALELAPEVRVNAVA 184 (249)
T ss_pred Chh---------hcCCCCCch-----------------------------hHHHHHHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 422 122223333 499999999999987653 68999999
Q ss_pred cccccCCCCCC-ch-hHhhhhcCCce-EEEEcccCceeEE-EeecC--CCCccEEEEeCCC
Q psy11859 437 PSIVLPSFQEP-VP-GWVDSLNGPVG-VLVASGKGVVRSM-ILNDL--STETQVFNISSNE 491 (851)
Q Consensus 437 p~~V~G~~~~p-~p-~~i~~~~~~~~-~~~~~g~~v~~~~-~~~~~--~~~~~iyni~~~~ 491 (851)
|+.|+||.... ++ .+........+ ...+..+|+++++ ....+ ...|++||+++|.
T Consensus 185 pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~~~g~~~~i~~g~ 245 (249)
T PRK09135 185 PGAILWPEDGNSFDEEARQAILARTPLKRIGTPEDIAEAVRFLLADASFITGQILAVDGGR 245 (249)
T ss_pred eccccCccccccCCHHHHHHHHhcCCcCCCcCHHHHHHHHHHHcCccccccCcEEEECCCe
Confidence 99999998643 22 22222222222 1123345676665 22222 2468899999983
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-17 Score=167.97 Aligned_cols=242 Identities=21% Similarity=0.207 Sum_probs=181.5
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++|+.||||-||+-|++|.+.||+.| +.|+.+.|..+..+. .|+ .+.+.+ -....++.++.||++|
T Consensus 1 ~~K~ALITGITGQDGsYLa~lLLekG---Y~VhGi~Rrss~~n~-~ri-~L~~~~---------~~~~~~l~l~~gDLtD 66 (345)
T COG1089 1 MGKVALITGITGQDGSYLAELLLEKG---YEVHGIKRRSSSFNT-PRI-HLYEDP---------HLNDPRLHLHYGDLTD 66 (345)
T ss_pred CCceEEEecccCCchHHHHHHHHhcC---cEEEEEeeccccCCc-ccc-eecccc---------ccCCceeEEEeccccc
Confidence 36889999999999999999999999 789999987654321 222 222111 1223469999999999
Q ss_pred CcCCCCHHHHHHHhc--CccEEEEccccCCcchh---HHHHHHHHHHHHHHHHHHHHhcCC-ceEEEEeeeeeeeCCC--
Q psy11859 297 ANLGIKDSDLLMLQE--EVSVVFNGAASLKLEAE---LKENVAANTRGTQRLLDIALKMKK-LVAFIHFSTAFCHPDQ-- 368 (851)
Q Consensus 297 ~~lgls~~~~~~~~~--~vd~ViH~AA~~~~~~~---~~~~~~~Nv~Gt~~ll~~a~~~~~-~~~fV~vSTa~~~~~~-- 368 (851)
.. .+..+++ ++|-|+|+||..++..+ |....+++-.||.+|||+.+..+. --+|...||.--+|..
T Consensus 67 ~~------~l~r~l~~v~PdEIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~ 140 (345)
T COG1089 67 SS------NLLRILEEVQPDEIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQE 140 (345)
T ss_pred hH------HHHHHHHhcCchhheeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCccc
Confidence 86 6777766 68999999998877643 456678999999999999988753 4789999998666654
Q ss_pred cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCC
Q psy11859 369 KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 369 ~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~ 446 (851)
.|..|..+..|.+| |+.+|.-|-.+...|.+ |+-.+.-+.+|--+|...
T Consensus 141 ~pq~E~TPFyPrSP-----------------------------YAvAKlYa~W~tvNYResYgl~AcnGILFNHESP~Rg 191 (345)
T COG1089 141 IPQKETTPFYPRSP-----------------------------YAVAKLYAYWITVNYRESYGLFACNGILFNHESPLRG 191 (345)
T ss_pred CccccCCCCCCCCH-----------------------------HHHHHHHHHheeeehHhhcCceeecceeecCCCCCCc
Confidence 48899999999988 99999999999988876 888888888888788654
Q ss_pred C------chhHhhhhc-CCce-EEE---------EcccCceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHHHHhh
Q psy11859 447 P------VPGWVDSLN-GPVG-VLV---------ASGKGVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQLIY 509 (851)
Q Consensus 447 p------~p~~i~~~~-~~~~-~~~---------~~g~~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~~~~ 509 (851)
. +..-+.++. |... +.+ |..+|.+.+|+.......++.|++++| ...|.+|+++...+..|
T Consensus 192 e~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~DYVe~mwlmLQq~~PddyViATg--~t~sVrefv~~Af~~~g 269 (345)
T COG1089 192 ETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYVEAMWLMLQQEEPDDYVIATG--ETHSVREFVELAFEMVG 269 (345)
T ss_pred cceehHHHHHHHHHHHccccceEEeccccccccccchHHHHHHHHHHHccCCCCceEEecC--ceeeHHHHHHHHHHHcC
Confidence 3 222222222 2222 222 222456666666666677889999999 56899999999999887
|
|
| >PF03015 Sterile: Male sterility protein; InterPro: IPR004262 This family represents the C-terminal region of the male sterility protein in a number of organisms | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-18 Score=152.46 Aligned_cols=60 Identities=35% Similarity=0.685 Sum_probs=58.9
Q ss_pred ccccccccCceEecCccHHHHHhcCCcccccccccccCCCCHHHHHHHHHhHHhhhhcCC
Q psy11859 2 HLLEYFTTRNWDFKNKRLLALHDNISEKDKQTFYIANIDVNIDDYLKTIILGARQYCLKE 61 (851)
Q Consensus 2 ~~l~~F~~~~W~f~~~n~~~l~~~l~~~d~~~F~~d~~~~~w~~y~~~~~~G~r~yl~ke 61 (851)
++++||+++||.|+|+|+.+|++.|+++||++|+||++++||++|+.+|+.|+|+||+||
T Consensus 35 ~~~~~F~~~eW~F~~~n~~~L~~~l~~~D~~~F~fD~~~idW~~Y~~~~~~G~rkyllke 94 (94)
T PF03015_consen 35 EVLEYFTTNEWIFDNDNTRRLWERLSPEDREIFNFDIRSIDWEEYFRNYIPGIRKYLLKE 94 (94)
T ss_pred HHHHHHHhCceeecchHHHHHHHhCchhcCceecCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 578999999999999999999999999999999999999999999999999999999998
|
The Arabidopsis thaliana male sterility 2 (MS2) protein is involved in male gametogenesis. The MS2 protein shows sequence similarity to a jojoba protein (also a member of this group) that converts wax fatty acids to fatty alcohols. It has been suggested that a possible function of the MS2 protein may be as a fatty acyl reductase in the formation of pollen wall substances [].; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process |
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4e-16 Score=165.84 Aligned_cols=172 Identities=19% Similarity=0.168 Sum_probs=120.7
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
-..+|+||||||||+||+.|+++|++.| ..|+++.|.... .... .+. ..+++++.+|+
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g---~~V~~~~R~~~~------~~~~------------~~~-~~~~~~~~~Dl 71 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKG---FAVKAGVRDVDK------AKTS------------LPQ-DPSLQIVRADV 71 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCC---CEEEEEecCHHH------HHHh------------ccc-CCceEEEEeeC
Confidence 3457899999999999999999999987 688888887532 1110 011 13688999999
Q ss_pred CCCcCCCCHHHHHHHh-cCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCccc-c
Q psy11859 295 LQANLGIKDSDLLMLQ-EEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVL-E 372 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~-~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i-~ 372 (851)
++.. ..+...+ .++|+|||+|+..... ++...+++|+.|+.++++++.+.+ +++||++||..+++..... .
T Consensus 72 ~d~~-----~~l~~~~~~~~d~vi~~~g~~~~~-~~~~~~~~n~~~~~~ll~a~~~~~-~~~iV~iSS~~v~g~~~~~~~ 144 (251)
T PLN00141 72 TEGS-----DKLVEAIGDDSDAVICATGFRRSF-DPFAPWKVDNFGTVNLVEACRKAG-VTRFILVSSILVNGAAMGQIL 144 (251)
T ss_pred CCCH-----HHHHHHhhcCCCEEEECCCCCcCC-CCCCceeeehHHHHHHHHHHHHcC-CCEEEEEccccccCCCccccc
Confidence 9842 2555556 6899999998864221 222346789999999999998875 8999999999887643210 0
Q ss_pred cccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCC
Q psy11859 373 EKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSF 444 (851)
Q Consensus 373 E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~ 444 (851)
...| .+.++ ...|..+|..+|.++.. .+++++++||+.+++..
T Consensus 145 ~~~~-~~~~~--------------------------~~~~~~~k~~~e~~l~~--~gi~~~iirpg~~~~~~ 187 (251)
T PLN00141 145 NPAY-IFLNL--------------------------FGLTLVAKLQAEKYIRK--SGINYTIVRPGGLTNDP 187 (251)
T ss_pred Ccch-hHHHH--------------------------HHHHHHHHHHHHHHHHh--cCCcEEEEECCCccCCC
Confidence 0000 00011 01255679999988764 37999999999999764
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-16 Score=169.71 Aligned_cols=197 Identities=15% Similarity=0.196 Sum_probs=133.2
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcC
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANL 299 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~l 299 (851)
+||||||||+||++++++|++.| .+|.+++|+..... ...++.+.+|+.|++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g---~~V~~~~R~~~~~~------------------------~~~~~~~~~d~~d~~- 52 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS---VPFLVASRSSSSSA------------------------GPNEKHVKFDWLDED- 52 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC---CcEEEEeCCCcccc------------------------CCCCccccccCCCHH-
Confidence 48999999999999999999988 67999999865320 125667889999987
Q ss_pred CCCHHHHHHHh------cC-ccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccc
Q psy11859 300 GIKDSDLLMLQ------EE-VSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLE 372 (851)
Q Consensus 300 gls~~~~~~~~------~~-vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~ 372 (851)
.+..++ ++ +|.|||+++.... .+..+.+++++|++.+ +++||++||..+...
T Consensus 53 -----~l~~a~~~~~~~~g~~d~v~~~~~~~~~----------~~~~~~~~i~aa~~~g-v~~~V~~Ss~~~~~~----- 111 (285)
T TIGR03649 53 -----TWDNPFSSDDGMEPEISAVYLVAPPIPD----------LAPPMIKFIDFARSKG-VRRFVLLSASIIEKG----- 111 (285)
T ss_pred -----HHHHHHhcccCcCCceeEEEEeCCCCCC----------hhHHHHHHHHHHHHcC-CCEEEEeeccccCCC-----
Confidence 777777 56 9999999875421 1234568999999985 999999999643211
Q ss_pred cccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhHh
Q psy11859 373 EKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWV 452 (851)
Q Consensus 373 E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~i 452 (851)
+ + .+...|..+.+. .+++++++||+.+++....+ .+.
T Consensus 112 ------~--~--------------------------------~~~~~~~~l~~~-~gi~~tilRp~~f~~~~~~~--~~~ 148 (285)
T TIGR03649 112 ------G--P--------------------------------AMGQVHAHLDSL-GGVEYTVLRPTWFMENFSEE--FHV 148 (285)
T ss_pred ------C--c--------------------------------hHHHHHHHHHhc-cCCCEEEEeccHHhhhhccc--ccc
Confidence 0 0 111234444332 38999999999888654221 112
Q ss_pred hhhcCCceEEEEccc---------CceeEEEeecC--CCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 453 DSLNGPVGVLVASGK---------GVVRSMILNDL--STETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 453 ~~~~~~~~~~~~~g~---------~v~~~~~~~~~--~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
..+.....+..+.|. |+++++..... ...+++|+++++ .++|+.|+++.+.+.+|+
T Consensus 149 ~~~~~~~~~~~~~g~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~l~g~--~~~s~~eia~~l~~~~g~ 215 (285)
T TIGR03649 149 EAIRKENKIYSATGDGKIPFVSADDIARVAYRALTDKVAPNTDYVVLGP--ELLTYDDVAEILSRVLGR 215 (285)
T ss_pred cccccCCeEEecCCCCccCcccHHHHHHHHHHHhcCCCcCCCeEEeeCC--ccCCHHHHHHHHHHHhCC
Confidence 223333333333343 33332221111 234679999988 689999999999999986
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >KOG1431|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-16 Score=153.66 Aligned_cols=224 Identities=18% Similarity=0.235 Sum_probs=159.6
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
++||||||+|.+|++|++.+...+++-.... +.-+ -..|+++..
T Consensus 2 ~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wv-f~~s-----------------------------------kd~DLt~~a 45 (315)
T KOG1431|consen 2 KKILVTGGTGLVGSAIVKVVQEQGFDDENWV-FIGS-----------------------------------KDADLTNLA 45 (315)
T ss_pred ceEEEecCCchHHHHHHHHHHhcCCCCcceE-Eecc-----------------------------------ccccccchH
Confidence 6899999999999999999998875211111 1111 135777654
Q ss_pred CCCCHHHHHHHhc--CccEEEEccccCCc----chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--c
Q psy11859 299 LGIKDSDLLMLQE--EVSVVFNGAASLKL----EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--V 370 (851)
Q Consensus 299 lgls~~~~~~~~~--~vd~ViH~AA~~~~----~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~ 370 (851)
+.+.+++ ++..|||+||.+.- ...+.+.++.|+.--.|+|..|-+.+ ++++|+.-|...+++.. |
T Consensus 46 ------~t~~lF~~ekPthVIhlAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~g-v~K~vsclStCIfPdkt~yP 118 (315)
T KOG1431|consen 46 ------DTRALFESEKPTHVIHLAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHG-VKKVVSCLSTCIFPDKTSYP 118 (315)
T ss_pred ------HHHHHHhccCCceeeehHhhhcchhhcCCCchHHHhhcceechhHHHHHHHhc-hhhhhhhcceeecCCCCCCC
Confidence 6666664 78999999998753 23445889999999999999999997 88888887777776653 7
Q ss_pred cccccCCC-CCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCC-
Q psy11859 371 LEEKLYPS-PVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQE- 446 (851)
Q Consensus 371 i~E~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~- 446 (851)
|+|..... |..| ---+|+..|+++.-.-+.|.. |...+.+-|.|||||.+.
T Consensus 119 IdEtmvh~gpphp-------------------------sN~gYsyAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDNf 173 (315)
T KOG1431|consen 119 IDETMVHNGPPHP-------------------------SNFGYSYAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNF 173 (315)
T ss_pred CCHHHhccCCCCC-------------------------CchHHHHHHHHHHHHHHHHHHHhCCceeeeccccccCCCCCC
Confidence 88875321 2111 012599999999987777765 999999999999999874
Q ss_pred ------CchhHhhhh-----cCCceEE-EEccc---------CceeEEEeec-CCCCccEEEEeCCCCccccHHHHHHHH
Q psy11859 447 ------PVPGWVDSL-----NGPVGVL-VASGK---------GVVRSMILND-LSTETQVFNISSNEVEAITWGEIISRG 504 (851)
Q Consensus 447 ------p~p~~i~~~-----~~~~~~~-~~~g~---------~v~~~~~~~~-~~~~~~iyni~~~~~~~~t~~el~~~~ 504 (851)
.+|+++..+ +|...++ +|.|. |+++.++... +-.+.+-.++++|+...+|++|+++.+
T Consensus 174 npe~sHVlPali~r~h~ak~~gtd~~~VwGsG~PlRqFiys~DLA~l~i~vlr~Y~~vEpiils~ge~~EVtI~e~aeaV 253 (315)
T KOG1431|consen 174 NPENSHVLPALIHRFHEAKRNGTDELTVWGSGSPLRQFIYSDDLADLFIWVLREYEGVEPIILSVGESDEVTIREAAEAV 253 (315)
T ss_pred CcccccchHHHHHHHHHHHhcCCceEEEecCCChHHHHhhHhHHHHHHHHHHHhhcCccceEeccCccceeEHHHHHHHH
Confidence 289988874 3443333 34442 2333222211 134556778999977789999999999
Q ss_pred HHHhhc
Q psy11859 505 KQLIYQ 510 (851)
Q Consensus 505 ~~~~~~ 510 (851)
.+..+.
T Consensus 254 ~ea~~F 259 (315)
T KOG1431|consen 254 VEAVDF 259 (315)
T ss_pred HHHhCC
Confidence 998764
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-16 Score=165.50 Aligned_cols=169 Identities=21% Similarity=0.270 Sum_probs=122.7
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++|+||||||||+||++|+++|++.| ..|.++.|.... ..+.+.. .+ .....++.++.+|+++
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g---~~v~~~~~~~~~--~~~~~~~--------~~----~~~~~~~~~~~~D~~~ 67 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAG---ADVVVHYRSDEE--AAEELVE--------AV----EALGRRAQAVQADVTD 67 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CeEEEEeCCCHH--HHHHHHH--------HH----HhcCCceEEEECCcCC
Confidence 46899999999999999999999998 566666665432 1111111 11 1122468899999998
Q ss_pred CcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHH----hcCCceEEEE
Q psy11859 297 ANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIAL----KMKKLVAFIH 358 (851)
Q Consensus 297 ~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV~ 358 (851)
++ ++..++ .++|+|||+||.... .+.+...+++|+.|+.++++++. +.+ .++||+
T Consensus 68 ~~------~v~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~i~ 140 (249)
T PRK12825 68 KA------ALEAAVAAAVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQR-GGRIVN 140 (249)
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEE
Confidence 76 555544 368999999996533 23456779999999999999984 443 789999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..++... .+. ..|+.+|+..|.++..++. +++++
T Consensus 141 ~SS~~~~~~~---------~~~-----------------------------~~y~~sK~~~~~~~~~~~~~~~~~~i~~~ 182 (249)
T PRK12825 141 ISSVAGLPGW---------PGR-----------------------------SNYAAAKAGLVGLTKALARELAEYGITVN 182 (249)
T ss_pred ECccccCCCC---------CCc-----------------------------hHHHHHHHHHHHHHHHHHHHHhhcCeEEE
Confidence 9997654221 111 3499999999988866532 89999
Q ss_pred EEecccccCCCCCC
Q psy11859 434 IVRPSIVLPSFQEP 447 (851)
Q Consensus 434 ivRp~~V~G~~~~p 447 (851)
++||+.++|+...+
T Consensus 183 ~i~pg~~~~~~~~~ 196 (249)
T PRK12825 183 MVAPGDIDTDMKEA 196 (249)
T ss_pred EEEECCccCCcccc
Confidence 99999999987544
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-16 Score=165.77 Aligned_cols=214 Identities=14% Similarity=0.127 Sum_probs=141.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||.+|+++|+++| .+|++++|+.... .... +.++. ...++.++.+|++
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g---~~V~~~~r~~~~~--~~~~---------~~l~~----~~~~~~~~~~Dl~ 65 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADG---AEVIVVDICGDDA--AATA---------ELVEA----AGGKARARQVDVR 65 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCC---CEEEEEeCCHHHH--HHHH---------HHHHh----cCCeEEEEECCCC
Confidence 467899999999999999999999998 6899999974321 1111 11111 1235889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh---cCCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK---MKKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~---~~~~~~fV~ 358 (851)
|++ ++..+++ .+|+|||+|+.... .+.+...+++|+.|+.++++++.. ..+.++||+
T Consensus 66 ~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~ 139 (251)
T PRK12826 66 DRA------ALKAAVAAGVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVL 139 (251)
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 876 5555553 68999999988654 234567899999999999998842 123678999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... ...+. ..|+.||+.+|.++..++. +++++
T Consensus 140 ~ss~~~~~~--------~~~~~-----------------------------~~y~~sK~a~~~~~~~~~~~~~~~~i~~~ 182 (251)
T PRK12826 140 TSSVAGPRV--------GYPGL-----------------------------AHYAASKAGLVGFTRALALELAARNITVN 182 (251)
T ss_pred EechHhhcc--------CCCCc-----------------------------cHHHHHHHHHHHHHHHHHHHHHHcCeEEE
Confidence 999755410 01112 2399999999999877643 79999
Q ss_pred EEecccccCCCCCCch-hH-hhhhcCCceE-EEEcccCceeEEEeecC----CCCccEEEEeCC
Q psy11859 434 IVRPSIVLPSFQEPVP-GW-VDSLNGPVGV-LVASGKGVVRSMILNDL----STETQVFNISSN 490 (851)
Q Consensus 434 ivRp~~V~G~~~~p~p-~~-i~~~~~~~~~-~~~~g~~v~~~~~~~~~----~~~~~iyni~~~ 490 (851)
++||+.++||...+.. .. ...+....++ .+....+++..+..... ...|++|++++|
T Consensus 183 ~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g 246 (251)
T PRK12826 183 SVHPGGVDTPMAGNLGDAQWAEAIAAAIPLGRLGEPEDIAAAVLFLASDEARYITGQTLPVDGG 246 (251)
T ss_pred EEeeCCCCcchhhhcCchHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCcCCcEEEECCC
Confidence 9999999999754422 11 2222222221 12223344333222111 225788998877
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.4e-16 Score=157.04 Aligned_cols=151 Identities=25% Similarity=0.338 Sum_probs=120.6
Q ss_pred EEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcCC
Q psy11859 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLG 300 (851)
Q Consensus 221 VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lg 300 (851)
|+|+||||++|+.|+++|++++ .+|+++.|+.... . + ..+++++.||+.|++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~---~~V~~~~R~~~~~--~--------------------~-~~~~~~~~~d~~d~~-- 52 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG---HEVTALVRSPSKA--E--------------------D-SPGVEIIQGDLFDPD-- 52 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGGGH--H--------------------H-CTTEEEEESCTTCHH--
T ss_pred eEEECCCChHHHHHHHHHHHCC---CEEEEEecCchhc--c--------------------c-ccccccceeeehhhh--
Confidence 7999999999999999999998 8999999986531 0 0 358999999999886
Q ss_pred CCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccCCCCC
Q psy11859 301 IKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPV 380 (851)
Q Consensus 301 ls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~ 380 (851)
.+..++.++|+|||+++.... ++.++++++++|++.+ +++||++||+.++.+....... ...+.
T Consensus 53 ----~~~~al~~~d~vi~~~~~~~~----------~~~~~~~~~~a~~~~~-~~~~v~~s~~~~~~~~~~~~~~-~~~~~ 116 (183)
T PF13460_consen 53 ----SVKAALKGADAVIHAAGPPPK----------DVDAAKNIIEAAKKAG-VKRVVYLSSAGVYRDPPGLFSD-EDKPI 116 (183)
T ss_dssp ----HHHHHHTTSSEEEECCHSTTT----------HHHHHHHHHHHHHHTT-SSEEEEEEETTGTTTCTSEEEG-GTCGG
T ss_pred ----hhhhhhhhcchhhhhhhhhcc----------cccccccccccccccc-cccceeeeccccCCCCCccccc-ccccc
Confidence 889999999999999976433 2788999999999986 9999999999887643321000 00000
Q ss_pred CHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCC
Q psy11859 381 SPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~ 445 (851)
+..|...|..+|.++.+ .+++++++||+.++|+..
T Consensus 117 ----------------------------~~~~~~~~~~~e~~~~~--~~~~~~ivrp~~~~~~~~ 151 (183)
T PF13460_consen 117 ----------------------------FPEYARDKREAEEALRE--SGLNWTIVRPGWIYGNPS 151 (183)
T ss_dssp ----------------------------GHHHHHHHHHHHHHHHH--STSEEEEEEESEEEBTTS
T ss_pred ----------------------------hhhhHHHHHHHHHHHHh--cCCCEEEEECcEeEeCCC
Confidence 13489999999999964 489999999999999853
|
... |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=174.96 Aligned_cols=183 Identities=20% Similarity=0.152 Sum_probs=128.7
Q ss_pred hhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 213 ARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 213 ~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
.+-..|++||||||+|+||++++++|++.| .+|++++|.... .+++.+.+.. ..+.........+++++.|
T Consensus 75 ~~~~~gKvVLVTGATGgIG~aLAr~LLk~G---~~Vval~Rn~ek---l~~l~~~l~~---~~L~~~Ga~~~~~v~iV~g 145 (576)
T PLN03209 75 LDTKDEDLAFVAGATGKVGSRTVRELLKLG---FRVRAGVRSAQR---AESLVQSVKQ---MKLDVEGTQPVEKLEIVEC 145 (576)
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHCC---CeEEEEeCCHHH---HHHHHHHhhh---hccccccccccCceEEEEe
Confidence 345688999999999999999999999998 688999987532 1111110000 0000000011246899999
Q ss_pred CCCCCcCCCCHHHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCccc
Q psy11859 293 DILQANLGIKDSDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVL 371 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i 371 (851)
|+++.+ ++..++.++|+|||+||..... ..+...+++|+.|+.+|+++|.+.+ +++||++||..++....
T Consensus 146 DLtD~e------sI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~ag-VgRIV~VSSiga~~~g~-- 216 (576)
T PLN03209 146 DLEKPD------QIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAK-VNHFILVTSLGTNKVGF-- 216 (576)
T ss_pred cCCCHH------HHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhC-CCEEEEEccchhcccCc--
Confidence 999876 7888889999999999875421 2355678899999999999998885 89999999976531110
Q ss_pred ccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCC
Q psy11859 372 EEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 372 ~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~ 445 (851)
.+. ..+. -..|...|..+|..+.. .+++++|||||.+.++.+
T Consensus 217 p~~----~~~s--------------------------k~~~~~~KraaE~~L~~--sGIrvTIVRPG~L~tp~d 258 (576)
T PLN03209 217 PAA----ILNL--------------------------FWGVLCWKRKAEEALIA--SGLPYTIVRPGGMERPTD 258 (576)
T ss_pred ccc----chhh--------------------------HHHHHHHHHHHHHHHHH--cCCCEEEEECCeecCCcc
Confidence 000 0011 13478889999988864 389999999999987743
|
|
| >KOG1221|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-17 Score=182.59 Aligned_cols=74 Identities=36% Similarity=0.641 Sum_probs=72.2
Q ss_pred ccccccccCceEecCccHHHHHhcCCcccccccccccCCCCHHHHHHHHHhHHhhhhcCCCCCChHHHHHHHHH
Q psy11859 2 HLLEYFTTRNWDFKNKRLLALHDNISEKDKQTFYIANIDVNIDDYLKTIILGARQYCLKEPLTTLPKARRQIKL 75 (851)
Q Consensus 2 ~~l~~F~~~~W~f~~~n~~~l~~~l~~~d~~~F~~d~~~~~w~~y~~~~~~G~r~yl~ke~~~~l~~a~~~~~~ 75 (851)
.+++||++++|.|+|+|+.+||++|+++||++|+||++++||+|||.+|+.|+|+||+||++++||+||++++|
T Consensus 394 ~~l~~f~~~~w~Fd~~n~~~L~~~~~~~d~~~f~fd~~~ldW~ey~~~~i~G~r~~llKe~~e~l~~~r~~~kr 467 (467)
T KOG1221|consen 394 KLLEPFSLFKWIFDNKNTEKLREKMSEEDKRLFNFDMKQLDWEEYFNRHLLGLRKYLLKESPESLPQARKRLKR 467 (467)
T ss_pred HhhhhheeceEEecCccHHHHHHhCCHHHHhhcCCCcccCCHHHHHHHHHHHHHHHHhcCChhhhHHHHHhhcC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999875
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.6e-16 Score=162.47 Aligned_cols=210 Identities=16% Similarity=0.174 Sum_probs=140.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||+++++.|++.| .+|+++.|.... .+.+.+ .++. ...++..+.+|++
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g---~~vi~~~r~~~~---~~~~~~--------~~~~----~~~~~~~~~~Dl~ 65 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREG---ASVVVADINAEG---AERVAK--------QIVA----DGGTAIAVQVDVS 65 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHH--------HHHh----cCCcEEEEEcCCC
Confidence 467999999999999999999999998 688999886432 112211 1111 1235778999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc----------chhHHHHHHHHHHHHHHHHHHHHhcC---CceE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL----------EAELKENVAANTRGTQRLLDIALKMK---KLVA 355 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~----------~~~~~~~~~~Nv~Gt~~ll~~a~~~~---~~~~ 355 (851)
++. ++..+++ .+|+|||+|+.... .+.+.+.+++|+.|+.++++++...- +..+
T Consensus 66 ~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ 139 (250)
T PRK07774 66 DPD------SAKAMADATVSAFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGA 139 (250)
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcE
Confidence 876 5444433 68999999997431 13355678999999999999997541 2468
Q ss_pred EEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CC
Q psy11859 356 FIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KL 430 (851)
Q Consensus 356 fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l 430 (851)
||++||..++. +. +.|+.||+..|.+++.++. ++
T Consensus 140 iv~~sS~~~~~------------~~-----------------------------~~Y~~sK~a~~~~~~~l~~~~~~~~i 178 (250)
T PRK07774 140 IVNQSSTAAWL------------YS-----------------------------NFYGLAKVGLNGLTQQLARELGGMNI 178 (250)
T ss_pred EEEEecccccC------------Cc-----------------------------cccHHHHHHHHHHHHHHHHHhCccCe
Confidence 99999976532 12 3399999999999877643 79
Q ss_pred CEEEEecccccCCCCCC-ch-hHhhhhcCCce-EEEEcccCceeEEEeecC----CCCccEEEEeCC
Q psy11859 431 PVVIVRPSIVLPSFQEP-VP-GWVDSLNGPVG-VLVASGKGVVRSMILNDL----STETQVFNISSN 490 (851)
Q Consensus 431 ~~~ivRp~~V~G~~~~p-~p-~~i~~~~~~~~-~~~~~g~~v~~~~~~~~~----~~~~~iyni~~~ 490 (851)
++++++||.+..+.... .| .+...+....+ ...+...+++.++..... ...+++||+++|
T Consensus 179 ~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~v~~g 245 (250)
T PRK07774 179 RVNAIAPGPIDTEATRTVTPKEFVADMVKGIPLSRMGTPEDLVGMCLFLLSDEASWITGQIFNVDGG 245 (250)
T ss_pred EEEEEecCcccCccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhhhCcCCCEEEECCC
Confidence 99999999998776543 12 22222211111 112223444444433322 235788999887
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-15 Score=162.32 Aligned_cols=166 Identities=18% Similarity=0.186 Sum_probs=120.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++||||||+|+||+++++.|++.| .+|+++.|.... .+++.+ .++. ...++.++.+|++
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G---~~v~~~~r~~~~---~~~~~~--------~~~~----~~~~~~~~~~Dl~ 66 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAG---AAVAIADLNQDG---ANAVAD--------EINK----AGGKAIGVAMDVT 66 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CeEEEEeCChHH---HHHHHH--------HHHh----cCceEEEEECCCC
Confidence 458999999999999999999999998 578888886532 111111 1111 1236788999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHH----HHHHHHHH-HhcCCceEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRG----TQRLLDIA-LKMKKLVAF 356 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~G----t~~ll~~a-~~~~~~~~f 356 (851)
+++ .+..+++ ++|+|||+||.... .+.++..+++|+.| +.++++++ +.. +..++
T Consensus 67 ~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~~~~i 139 (262)
T PRK13394 67 NED------AVNAGIDKVAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDD-RGGVV 139 (262)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhc-CCcEE
Confidence 886 5544433 48999999997543 13456778899999 77777777 444 47899
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~ 431 (851)
|++||.++... ..+. +.|+.||+..|.+++.++. ++.
T Consensus 140 v~~ss~~~~~~---------~~~~-----------------------------~~y~~sk~a~~~~~~~la~~~~~~~i~ 181 (262)
T PRK13394 140 IYMGSVHSHEA---------SPLK-----------------------------SAYVTAKHGLLGLARVLAKEGAKHNVR 181 (262)
T ss_pred EEEcchhhcCC---------CCCC-----------------------------cccHHHHHHHHHHHHHHHHHhhhcCeE
Confidence 99999644321 1111 3499999999988876643 799
Q ss_pred EEEEecccccCCC
Q psy11859 432 VVIVRPSIVLPSF 444 (851)
Q Consensus 432 ~~ivRp~~V~G~~ 444 (851)
++++||+.|+++.
T Consensus 182 v~~v~pg~v~~~~ 194 (262)
T PRK13394 182 SHVVCPGFVRTPL 194 (262)
T ss_pred EEEEeeCcccchh
Confidence 9999999999985
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-15 Score=162.67 Aligned_cols=234 Identities=18% Similarity=0.179 Sum_probs=151.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||+++++.|++.| .+|+++.|..... +.+. +.+.... ...++.++.+|++
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G---~~V~~~~r~~~~~---~~~~--------~~l~~~~--~~~~~~~~~~Dl~ 68 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAG---AAVMIVGRNPDKL---AAAA--------EEIEALK--GAGAVRYEPADVT 68 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CeEEEEeCCHHHH---HHHH--------HHHHhcc--CCCceEEEEcCCC
Confidence 567999999999999999999999998 6888888864321 1111 1111110 1246889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhcC---CceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKMK---KLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~~---~~~~fV 357 (851)
+++ ++..+++ .+|+|||+||.... .+.+...+++|+.|+.++++++.+.. +-.+||
T Consensus 69 ~~~------~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv 142 (276)
T PRK05875 69 DED------QVARAVDAATAWHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFV 142 (276)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 876 5555544 68999999985421 12356778999999999999876531 234899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+... ..+. +.|+.||+..|.+++.++. ++.+
T Consensus 143 ~~sS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~~~~~~~~~~i~v 184 (276)
T PRK05875 143 GISSIAASNT---------HRWF-----------------------------GAYGVTKSAVDHLMKLAADELGPSWVRV 184 (276)
T ss_pred EEechhhcCC---------CCCC-----------------------------cchHHHHHHHHHHHHHHHHHhcccCeEE
Confidence 9999755321 1112 3499999999999987653 7899
Q ss_pred EEEecccccCCCCCCc---hhHhhhhcCCce-EEEEcccCceeEEEeecCC----CCccEEEEeCCCCc--cccHHHHHH
Q psy11859 433 VIVRPSIVLPSFQEPV---PGWVDSLNGPVG-VLVASGKGVVRSMILNDLS----TETQVFNISSNEVE--AITWGEIIS 502 (851)
Q Consensus 433 ~ivRp~~V~G~~~~p~---p~~i~~~~~~~~-~~~~~g~~v~~~~~~~~~~----~~~~iyni~~~~~~--~~t~~el~~ 502 (851)
+++||+.|.++..... +.+...+....+ ..++...++++++...... ..+++|++++|..- +.+..|+++
T Consensus 185 ~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 264 (276)
T PRK05875 185 NSIRPGLIRTDLVAPITESPELSADYRACTPLPRVGEVEDVANLAMFLLSDAASWITGQVINVDGGHMLRRGPDFSSMLE 264 (276)
T ss_pred EEEecCccCCccccccccCHHHHHHHHcCCCCCCCcCHHHHHHHHHHHcCchhcCcCCCEEEECCCeeccCCccHHHHHH
Confidence 9999999987654321 111122111111 1123335565544433331 24789999988421 127777777
Q ss_pred HHHHHhh
Q psy11859 503 RGKQLIY 509 (851)
Q Consensus 503 ~~~~~~~ 509 (851)
.+....+
T Consensus 265 ~~~~~~~ 271 (276)
T PRK05875 265 PVFGADG 271 (276)
T ss_pred HHhhHHH
Confidence 7665433
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-15 Score=160.78 Aligned_cols=163 Identities=15% Similarity=0.160 Sum_probs=120.8
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
.+++||||||+|+||++|+++|++.| .+|++++|.... .+.+. . ....++.++.+|++|
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G---~~V~~~~r~~~~---~~~l~------------~---~~~~~~~~~~~D~~d 61 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAG---HRVVGTVRSEAA---RADFE------------A---LHPDRALARLLDVTD 61 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCc---CEEEEEeCCHHH---HHHHH------------h---hcCCCeeEEEccCCC
Confidence 46889999999999999999999998 689999986432 11111 1 112368889999999
Q ss_pred CcCCCCHHHHHHHhc-------CccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHh---cCCceEEEEe
Q psy11859 297 ANLGIKDSDLLMLQE-------EVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALK---MKKLVAFIHF 359 (851)
Q Consensus 297 ~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~---~~~~~~fV~v 359 (851)
++ .+..+++ .+|+|||+||..... +.+...+++|+.|+.++++++.. ..+..++|++
T Consensus 62 ~~------~~~~~~~~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~i 135 (277)
T PRK06180 62 FD------AIDAVVADAEATFGPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNI 135 (277)
T ss_pred HH------HHHHHHHHHHHHhCCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 86 5555443 589999999976432 23567799999999999998643 2235689999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..+... ..+. ..|+.||+..|.+++.++. ++++++
T Consensus 136 SS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~ 177 (277)
T PRK06180 136 TSMGGLIT---------MPGI-----------------------------GYYCGSKFALEGISESLAKEVAPFGIHVTA 177 (277)
T ss_pred ecccccCC---------CCCc-----------------------------chhHHHHHHHHHHHHHHHHHhhhhCcEEEE
Confidence 99654321 1122 2399999999998876542 899999
Q ss_pred EecccccCCC
Q psy11859 435 VRPSIVLPSF 444 (851)
Q Consensus 435 vRp~~V~G~~ 444 (851)
+|||.|.++.
T Consensus 178 i~Pg~v~t~~ 187 (277)
T PRK06180 178 VEPGSFRTDW 187 (277)
T ss_pred EecCCcccCc
Confidence 9999998764
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.1e-15 Score=158.17 Aligned_cols=173 Identities=16% Similarity=0.134 Sum_probs=124.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+|+||||+|+||++|++.|++.| ..|+++.|..... .+...++ .+.+ .....++.++.+|++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g---~~v~~~~~~~~~~--~~~~~~~-----~~~~----~~~~~~~~~~~~Dl~ 69 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADG---ADVIVLDIHPMRG--RAEADAV-----AAGI----EAAGGKALGLAFDVR 69 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC---CeEEEEcCccccc--HHHHHHH-----HHHH----HhcCCcEEEEEccCC
Confidence 467899999999999999999999998 5788877653321 1111111 1111 112247889999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHH-----hcCCceEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIAL-----KMKKLVAF 356 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~-----~~~~~~~f 356 (851)
+++ ++..++ .++|+|||+||.... .+.+...+++|+.|+.++++++. +. +..+|
T Consensus 70 ~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~i 142 (249)
T PRK12827 70 DFA------ATRAALDAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRAR-RGGRI 142 (249)
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-CCeEE
Confidence 986 555443 368999999997652 13456789999999999999997 23 36789
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~ 431 (851)
|++||..+... ..+. ..|+.+|+..+.+++.++. +++
T Consensus 143 v~~sS~~~~~~---------~~~~-----------------------------~~y~~sK~a~~~~~~~l~~~~~~~~i~ 184 (249)
T PRK12827 143 VNIASVAGVRG---------NRGQ-----------------------------VNYAASKAGLIGLTKTLANELAPRGIT 184 (249)
T ss_pred EEECCchhcCC---------CCCC-----------------------------chhHHHHHHHHHHHHHHHHHhhhhCcE
Confidence 99999654322 1122 3399999999888876542 899
Q ss_pred EEEEecccccCCCCCC
Q psy11859 432 VVIVRPSIVLPSFQEP 447 (851)
Q Consensus 432 ~~ivRp~~V~G~~~~p 447 (851)
++++|||.|.++....
T Consensus 185 ~~~i~pg~v~t~~~~~ 200 (249)
T PRK12827 185 VNAVAPGAINTPMADN 200 (249)
T ss_pred EEEEEECCcCCCcccc
Confidence 9999999999986543
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-15 Score=162.98 Aligned_cols=224 Identities=14% Similarity=0.137 Sum_probs=143.9
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++++||||||+|+||++++++|++.| .+|++++|.... +.++ .+. ...++.++.+|+++
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g---~~V~~~~r~~~~------~~~~---------~~~---~~~~~~~~~~D~~~ 60 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERG---DRVVATARDTAT------LADL---------AEK---YGDRLLPLALDVTD 60 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEECCHHH------HHHH---------HHh---ccCCeeEEEccCCC
Confidence 46899999999999999999999988 678999986432 1111 111 12367889999998
Q ss_pred CcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHH----hcCCceEEEE
Q psy11859 297 ANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIAL----KMKKLVAFIH 358 (851)
Q Consensus 297 ~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV~ 358 (851)
++ ++..++ ..+|+|||+||.... .+.++..+++|+.|+.++++++. +. +..++|+
T Consensus 61 ~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~ 133 (275)
T PRK08263 61 RA------AVFAAVETAVEHFGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQ-RSGHIIQ 133 (275)
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEE
Confidence 76 444433 367999999997643 24567889999999988888763 33 3679999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+.... ... ..|+.||+..|.++..++. ++++.
T Consensus 134 vsS~~~~~~~---------~~~-----------------------------~~Y~~sKaa~~~~~~~la~e~~~~gi~v~ 175 (275)
T PRK08263 134 ISSIGGISAF---------PMS-----------------------------GIYHASKWALEGMSEALAQEVAEFGIKVT 175 (275)
T ss_pred EcChhhcCCC---------CCc-----------------------------cHHHHHHHHHHHHHHHHHHHhhhhCcEEE
Confidence 9996554321 111 3499999999888866532 89999
Q ss_pred EEecccccCCCCCC-------chhH---hhhhcCC-ceEEE-EcccCceeEEEeecCC-CCccEEEEeCCCCccccHHHH
Q psy11859 434 IVRPSIVLPSFQEP-------VPGW---VDSLNGP-VGVLV-ASGKGVVRSMILNDLS-TETQVFNISSNEVEAITWGEI 500 (851)
Q Consensus 434 ivRp~~V~G~~~~p-------~p~~---i~~~~~~-~~~~~-~~g~~v~~~~~~~~~~-~~~~iyni~~~~~~~~t~~el 500 (851)
++|||.+..+...+ .+.+ ...+... ....+ +...++++.+....+. .....|+++++. .++++.++
T Consensus 176 ~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dva~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~ 254 (275)
T PRK08263 176 LVEPGGYSTDWAGTSAKRATPLDAYDTLREELAEQWSERSVDGDPEAAAEALLKLVDAENPPLRLFLGSGV-LDLAKADY 254 (275)
T ss_pred EEecCCccCCccccccccCCCchhhhhHHHHHHHHHHhccCCCCHHHHHHHHHHHHcCCCCCeEEEeCchH-HHHHHHHH
Confidence 99999887654321 1111 1111000 00011 3334555544443332 222235454442 46777787
Q ss_pred HHHHHHH
Q psy11859 501 ISRGKQL 507 (851)
Q Consensus 501 ~~~~~~~ 507 (851)
.+.+.++
T Consensus 255 ~~~~~~~ 261 (275)
T PRK08263 255 ERRLATW 261 (275)
T ss_pred HHHHHHH
Confidence 7777764
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-15 Score=159.26 Aligned_cols=214 Identities=15% Similarity=0.180 Sum_probs=137.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++||||||+|+||+++++.|++.| ..|+++.+.... ..+.+ .+.++ +...++.++.+|++
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g---~~v~~~~~~~~~--~~~~~--------~~~l~----~~~~~~~~~~~D~~ 66 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEG---AKVVINYNSSKE--AAENL--------VNELG----KEGHDVYAVQADVS 66 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcC---CEEEEEcCCcHH--HHHHH--------HHHHH----hcCCeEEEEECCCC
Confidence 467999999999999999999999988 566665543221 11111 11121 11236889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
+++ ++..+++ .+|+|||+|+..... +.+.+.+++|+.|+.++++++... ....+||+
T Consensus 67 ~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~ 140 (247)
T PRK12935 67 KVE------DANRLVEEAVNHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIIS 140 (247)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 886 5554443 489999999975431 456678999999999999998743 12468999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||.++.... .+. ..|+.||+..|.+++.+.. +++++
T Consensus 141 ~sS~~~~~~~---------~~~-----------------------------~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~ 182 (247)
T PRK12935 141 ISSIIGQAGG---------FGQ-----------------------------TNYSAAKAGMLGFTKSLALELAKTNVTVN 182 (247)
T ss_pred EcchhhcCCC---------CCC-----------------------------cchHHHHHHHHHHHHHHHHHHHHcCcEEE
Confidence 9996553211 122 3499999988887765532 89999
Q ss_pred EEecccccCCCCCCchh-Hhhhh-cCCceEEEEcccCceeEEEeecC-C--CCccEEEEeCC
Q psy11859 434 IVRPSIVLPSFQEPVPG-WVDSL-NGPVGVLVASGKGVVRSMILNDL-S--TETQVFNISSN 490 (851)
Q Consensus 434 ivRp~~V~G~~~~p~p~-~i~~~-~~~~~~~~~~g~~v~~~~~~~~~-~--~~~~iyni~~~ 490 (851)
+++|+.|.++....+|. ..... .+...-..+...++++++..... . ..+++||++++
T Consensus 183 ~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~edva~~~~~~~~~~~~~~g~~~~i~~g 244 (247)
T PRK12935 183 AICPGFIDTEMVAEVPEEVRQKIVAKIPKKRFGQADEIAKGVVYLCRDGAYITGQQLNINGG 244 (247)
T ss_pred EEEeCCCcChhhhhccHHHHHHHHHhCCCCCCcCHHHHHHHHHHHcCcccCccCCEEEeCCC
Confidence 99999998764333221 11111 11111112233455544433222 1 35788888876
|
|
| >KOG1074|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-16 Score=181.62 Aligned_cols=66 Identities=36% Similarity=0.698 Sum_probs=53.5
Q ss_pred cccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCC----CccCC---CCCCccc
Q psy11859 721 QCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIK----PYPCT---LCVKKSL 790 (851)
Q Consensus 721 ~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gek----p~~C~---~Cgk~f~ 790 (851)
+| -.|.+.....+.|+.|.++|+|||||+|. .||++|+++.+|+.|+.+|...- +|.|+ .|-+.|.
T Consensus 607 qC--iiC~rVlSC~saLqmHyrtHtGERPFkCK--iCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kft 679 (958)
T KOG1074|consen 607 QC--IICLRVLSCPSALQMHYRTHTGERPFKCK--ICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFT 679 (958)
T ss_pred ce--eeeeecccchhhhhhhhhcccCcCccccc--cccchhccccchhhcccccccCccccccccCCchhhhccccc
Confidence 56 34666666666789999999999999997 89999999999999999886543 47788 8888775
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-15 Score=157.74 Aligned_cols=168 Identities=20% Similarity=0.242 Sum_probs=122.3
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++++||||||+|+||++|++.|+++| .+|+++.|+.... +.+. +.+. ....++.++.+|++|
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g---~~v~~~~r~~~~~---~~~~--------~~~~----~~~~~~~~~~~D~~~ 65 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADG---AKVVIYDSNEEAA---EALA--------AELR----AAGGEARVLVFDVSD 65 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCChhHH---HHHH--------HHHH----hcCCceEEEEccCCC
Confidence 46899999999999999999999998 5788988875321 1111 1111 122468899999998
Q ss_pred CcCCCCHHHHHHHhc-------CccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHH----hcCCceEEEE
Q psy11859 297 ANLGIKDSDLLMLQE-------EVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIAL----KMKKLVAFIH 358 (851)
Q Consensus 297 ~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV~ 358 (851)
++ ++..+++ .+|+|||+||..... +.+.+.+++|+.|+.++++++. +. ..++||+
T Consensus 66 ~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~~~~ii~ 138 (246)
T PRK05653 66 EA------AVRALIEAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKA-RYGRIVN 138 (246)
T ss_pred HH------HHHHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEE
Confidence 86 4444433 569999999876442 2356779999999999998885 33 3689999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... ..+. ..|+.+|+..|.+++.++. ++.++
T Consensus 139 ~ss~~~~~~---------~~~~-----------------------------~~y~~sk~~~~~~~~~l~~~~~~~~i~~~ 180 (246)
T PRK05653 139 ISSVSGVTG---------NPGQ-----------------------------TNYSAAKAGVIGFTKALALELASRGITVN 180 (246)
T ss_pred ECcHHhccC---------CCCC-----------------------------cHhHhHHHHHHHHHHHHHHHHhhcCeEEE
Confidence 999643211 1112 3499999998888876542 78999
Q ss_pred EEecccccCCCCCC
Q psy11859 434 IVRPSIVLPSFQEP 447 (851)
Q Consensus 434 ivRp~~V~G~~~~p 447 (851)
++||+.+.|+...+
T Consensus 181 ~i~pg~~~~~~~~~ 194 (246)
T PRK05653 181 AVAPGFIDTDMTEG 194 (246)
T ss_pred EEEeCCcCCcchhh
Confidence 99999999987654
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-15 Score=158.59 Aligned_cols=163 Identities=17% Similarity=0.138 Sum_probs=117.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ..+...+ +. ....++.++.+|++
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G---~~v~~~~r~~~---~~~~~~~---------~~----~~~~~~~~~~~D~~ 66 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEG---ARVVLVDRSEL---VHEVAAE---------LR----AAGGEALALTADLE 66 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCchH---HHHHHHH---------HH----hcCCeEEEEEEeCC
Confidence 678999999999999999999999998 67888888631 1111111 11 11236788999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCC----c----chhHHHHHHHHHHHHHHHHHHHH----hcCCceEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLK----L----EAELKENVAANTRGTQRLLDIAL----KMKKLVAF 356 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~----~----~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~f 356 (851)
+++ ++..++ ..+|+|||+|+... + .+.+...+++|+.|+..+++.+. +. +..++
T Consensus 67 ~~~------~~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~i 139 (260)
T PRK12823 67 TYA------GAQAAMAAAVEAFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQ-GGGAI 139 (260)
T ss_pred CHH------HHHHHHHHHHHHcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCeE
Confidence 875 444433 36899999998431 1 13456778999999886666554 33 35689
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~ 431 (851)
|++||..+++. +. ..|+.||+..|.+++.++. +++
T Consensus 140 v~~sS~~~~~~-----------~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~ 179 (260)
T PRK12823 140 VNVSSIATRGI-----------NR-----------------------------VPYSAAKGGVNALTASLAFEYAEHGIR 179 (260)
T ss_pred EEEcCccccCC-----------CC-----------------------------CccHHHHHHHHHHHHHHHHHhcccCcE
Confidence 99999754321 11 2399999999998877642 899
Q ss_pred EEEEecccccCCC
Q psy11859 432 VVIVRPSIVLPSF 444 (851)
Q Consensus 432 ~~ivRp~~V~G~~ 444 (851)
+.+++||.|++|.
T Consensus 180 v~~v~Pg~v~t~~ 192 (260)
T PRK12823 180 VNAVAPGGTEAPP 192 (260)
T ss_pred EEEEecCccCCcc
Confidence 9999999999973
|
|
| >KOG2865|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-15 Score=152.82 Aligned_cols=227 Identities=17% Similarity=0.179 Sum_probs=163.1
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
-++|-.+-|-|||||+|..+|.+|.+.| .+|++--|..... ..+++-+ .....|-+..-|+
T Consensus 58 S~sGiVaTVFGAtGFlGryvvnklak~G---SQviiPyR~d~~~--~r~lkvm--------------GdLGQvl~~~fd~ 118 (391)
T KOG2865|consen 58 SVSGIVATVFGATGFLGRYVVNKLAKMG---SQVIIPYRGDEYD--PRHLKVM--------------GDLGQVLFMKFDL 118 (391)
T ss_pred cccceEEEEecccccccHHHHHHHhhcC---CeEEEeccCCccc--hhheeec--------------ccccceeeeccCC
Confidence 3567778899999999999999999999 6788877876542 1111100 1234788999999
Q ss_pred CCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccc
Q psy11859 295 LQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEK 374 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~ 374 (851)
+|++ ++..+.+..++||++-+.---..+ -.+.++|+.|.+.|++.|++++ +++|||+|+..++
T Consensus 119 ~Ded------SIr~vvk~sNVVINLIGrd~eTkn-f~f~Dvn~~~aerlAricke~G-VerfIhvS~Lgan--------- 181 (391)
T KOG2865|consen 119 RDED------SIRAVVKHSNVVINLIGRDYETKN-FSFEDVNVHIAERLARICKEAG-VERFIHVSCLGAN--------- 181 (391)
T ss_pred CCHH------HHHHHHHhCcEEEEeeccccccCC-cccccccchHHHHHHHHHHhhC-hhheeehhhcccc---------
Confidence 9998 999999999999999985311122 2457899999999999999997 9999999995432
Q ss_pred cCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhHhhh
Q psy11859 375 LYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDS 454 (851)
Q Consensus 375 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~i~~ 454 (851)
. .+ ++-|-.||+++|..++++- -..+|+||+.|||..+.-+..|...
T Consensus 182 --v--~s---------------------------~Sr~LrsK~~gE~aVrdaf--PeAtIirPa~iyG~eDrfln~ya~~ 228 (391)
T KOG2865|consen 182 --V--KS---------------------------PSRMLRSKAAGEEAVRDAF--PEATIIRPADIYGTEDRFLNYYASF 228 (391)
T ss_pred --c--cC---------------------------hHHHHHhhhhhHHHHHhhC--CcceeechhhhcccchhHHHHHHHH
Confidence 0 11 2348999999999998863 2489999999999988765555544
Q ss_pred hcCCce-EEEEcc----------cCceeEEEeecC--CCCccEEEEeCCCCccccHHHHHHHHHHHhhcCC
Q psy11859 455 LNGPVG-VLVASG----------KGVVRSMILNDL--STETQVFNISSNEVEAITWGEIISRGKQLIYQYP 512 (851)
Q Consensus 455 ~~~~~~-~~~~~g----------~~v~~~~~~~~~--~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~p 512 (851)
.+.-.. .+.+.| .|++.++..+.. ...|.+|-++++ ......|+++.+.+.....|
T Consensus 229 ~rk~~~~pL~~~GekT~K~PVyV~DVaa~IvnAvkDp~s~Gktye~vGP--~~yql~eLvd~my~~~~~~~ 297 (391)
T KOG2865|consen 229 WRKFGFLPLIGKGEKTVKQPVYVVDVAAAIVNAVKDPDSMGKTYEFVGP--DRYQLSELVDIMYDMAREWP 297 (391)
T ss_pred HHhcCceeeecCCcceeeccEEEehHHHHHHHhccCccccCceeeecCC--chhhHHHHHHHHHHHHhhcc
Confidence 332111 111222 133333332221 457889999988 56899999999999877655
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=154.98 Aligned_cols=169 Identities=18% Similarity=0.146 Sum_probs=122.0
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
.|+||||||+|+||++|+++|++.| .+|++++|..... .+... +.++ ....++.++.+|++++
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g---~~vi~~~r~~~~~--~~~~~--------~~~~----~~~~~~~~~~~D~~~~ 64 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAG---FDLAINDRPDDEE--LAATQ--------QELR----ALGVEVIFFPADVADL 64 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCC---CEEEEEecCchhH--HHHHH--------HHHH----hcCCceEEEEecCCCH
Confidence 4789999999999999999999998 5788888764321 11110 1111 1123788999999987
Q ss_pred cCCCCHHHHHHHh-------cCccEEEEccccCCc---------chhHHHHHHHHHHHHHHHHHHHHhc----CC-----
Q psy11859 298 NLGIKDSDLLMLQ-------EEVSVVFNGAASLKL---------EAELKENVAANTRGTQRLLDIALKM----KK----- 352 (851)
Q Consensus 298 ~lgls~~~~~~~~-------~~vd~ViH~AA~~~~---------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~~----- 352 (851)
+ ++..++ ..+|+|||+||.... .+.+++.+++|+.|+.++++++... ..
T Consensus 65 ~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ 138 (256)
T PRK12745 65 S------AHEAMLDAAQAAWGRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELP 138 (256)
T ss_pred H------HHHHHHHHHHHhcCCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCC
Confidence 6 544443 368999999987432 1456678999999999999988542 11
Q ss_pred ceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh-----
Q psy11859 353 LVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----- 427 (851)
Q Consensus 353 ~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----- 427 (851)
..+||++||..+.... .+. ..|+.||+..|.+++.++
T Consensus 139 ~~~iv~~sS~~~~~~~---------~~~-----------------------------~~Y~~sK~a~~~~~~~l~~~~~~ 180 (256)
T PRK12745 139 HRSIVFVSSVNAIMVS---------PNR-----------------------------GEYCISKAGLSMAAQLFAARLAE 180 (256)
T ss_pred CcEEEEECChhhccCC---------CCC-----------------------------cccHHHHHHHHHHHHHHHHHHHH
Confidence 5679999996543211 111 349999999999988775
Q ss_pred CCCCEEEEecccccCCCCCC
Q psy11859 428 TKLPVVIVRPSIVLPSFQEP 447 (851)
Q Consensus 428 ~~l~~~ivRp~~V~G~~~~p 447 (851)
.+++++++|||.+.++...+
T Consensus 181 ~gi~v~~i~pg~v~t~~~~~ 200 (256)
T PRK12745 181 EGIGVYEVRPGLIKTDMTAP 200 (256)
T ss_pred hCCEEEEEecCCCcCccccc
Confidence 28999999999999876543
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.1e-15 Score=155.98 Aligned_cols=167 Identities=17% Similarity=0.116 Sum_probs=119.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++||||||+|+||++++++|++.| .+|+++.|.... .+.+.. .++ ....++.++.+|++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g---~~v~~~~r~~~~---~~~~~~--------~~~----~~~~~~~~~~~Dl~ 63 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEG---AKVVIADLNDEA---AAAAAE--------ALQ----KAGGKAIGVAMDVT 63 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CeEEEEeCCHHH---HHHHHH--------HHH----hcCCcEEEEEcCCC
Confidence 357899999999999999999999998 689999887532 111111 111 11247889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHH----HhcCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIA----LKMKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a----~~~~~~~~fV 357 (851)
+++ ++..+++ .+|+|||+|+..... +.+...+++|+.|+.++++.+ ++. ..++||
T Consensus 64 ~~~------~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv 136 (258)
T PRK12429 64 DEE------AINAGIDYAVETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQ-GGGRII 136 (258)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhc-CCeEEE
Confidence 886 5555443 689999999975442 234567889999955555554 444 378999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||.++... ..+. +.|+.+|+..+.+++.++. ++.+
T Consensus 137 ~iss~~~~~~---------~~~~-----------------------------~~y~~~k~a~~~~~~~l~~~~~~~~i~v 178 (258)
T PRK12429 137 NMASVHGLVG---------SAGK-----------------------------AAYVSAKHGLIGLTKVVALEGATHGVTV 178 (258)
T ss_pred EEcchhhccC---------CCCc-----------------------------chhHHHHHHHHHHHHHHHHHhcccCeEE
Confidence 9999654321 1122 3499999999888765532 7899
Q ss_pred EEEecccccCCCC
Q psy11859 433 VIVRPSIVLPSFQ 445 (851)
Q Consensus 433 ~ivRp~~V~G~~~ 445 (851)
.++||+.|.+|..
T Consensus 179 ~~~~pg~v~~~~~ 191 (258)
T PRK12429 179 NAICPGYVDTPLV 191 (258)
T ss_pred EEEecCCCcchhh
Confidence 9999999998753
|
|
| >cd09071 FAR_C C-terminal domain of fatty acyl CoA reductases | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-16 Score=140.09 Aligned_cols=58 Identities=41% Similarity=0.751 Sum_probs=56.6
Q ss_pred ccccccccCceEecCccHHHHHhcCCcccccccccccCCCCHHHHHHHHHhHHhhhhc
Q psy11859 2 HLLEYFTTRNWDFKNKRLLALHDNISEKDKQTFYIANIDVNIDDYLKTIILGARQYCL 59 (851)
Q Consensus 2 ~~l~~F~~~~W~f~~~n~~~l~~~l~~~d~~~F~~d~~~~~w~~y~~~~~~G~r~yl~ 59 (851)
++++||+++||.|+|+|+++|++.|+++||++|+||++.+||++|+.+|+.|+|+|++
T Consensus 35 ~~~~~Ft~~~w~F~~~n~~~L~~~l~~~Dr~~F~fD~~~idW~~Y~~~~~~G~r~yll 92 (92)
T cd09071 35 DLLEYFTTNEWRFDNDNTRALWERLSEEDRELFNFDIRSIDWDDYFENYIPGLRKYLL 92 (92)
T ss_pred HHhhccccCeEEeeCcHHHHHHHHCCHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999999999999999999999999999999999986
|
C-terminal domain of fatty acyl CoA reductases, a family of SDR-like proteins. SDRs or short-chain dehydrogenases/reductases are Rossmann-fold NAD(P)H-binding proteins. Many proteins in this FAR_C family may function as fatty acyl-CoA reductases (FARs), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as the biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. The function of this C-terminal domain is unclear. |
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=154.40 Aligned_cols=166 Identities=16% Similarity=0.187 Sum_probs=121.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++||||||||+||++++++|++.| ..|++++|.... .+.+. +.+++ ...++.++.+|++
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g---~~v~~~~r~~~~---~~~~~--------~~~~~----~~~~~~~~~~d~~ 62 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEG---AKVAVFDLNREA---AEKVA--------ADIRA----KGGNAQAFACDIT 62 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEecCCHHH---HHHHH--------HHHHh----cCCcEEEEEcCCC
Confidence 368999999999999999999999998 678888886432 11111 11111 1236889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHH----hcCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIAL----KMKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV 357 (851)
+++ +++.+++ ++|+|||+|+.... .+.++..+++|+.|+.++++++. +. +..++|
T Consensus 63 ~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii 135 (250)
T TIGR03206 63 DRD------SVDTAVAAAEQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVER-GAGRIV 135 (250)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCeEEE
Confidence 876 5555443 68999999986432 12345679999999999988875 33 367899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..++... ... ..|+.||++.|.+++.++. ++++
T Consensus 136 ~iss~~~~~~~---------~~~-----------------------------~~Y~~sK~a~~~~~~~la~~~~~~~i~v 177 (250)
T TIGR03206 136 NIASDAARVGS---------SGE-----------------------------AVYAACKGGLVAFSKTMAREHARHGITV 177 (250)
T ss_pred EECchhhccCC---------CCC-----------------------------chHHHHHHHHHHHHHHHHHHHhHhCcEE
Confidence 99997554321 111 2399999888888776543 8999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
.++|||.++++.
T Consensus 178 ~~v~pg~~~~~~ 189 (250)
T TIGR03206 178 NVVCPGPTDTAL 189 (250)
T ss_pred EEEecCcccchh
Confidence 999999998874
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=154.92 Aligned_cols=168 Identities=20% Similarity=0.234 Sum_probs=119.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEE-ecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYIL-CRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l-~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
+++++|+||||+|+||++|++.|++.| .+|.++ .|... .+.+. .+.+. ....++.++.+|+
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G---~~v~i~~~r~~~------~~~~~-----~~~~~----~~~~~~~~~~~D~ 65 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDG---ALVAIHYGRNKQ------AADET-----IREIE----SNGGKAFLIEADL 65 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEcCCCHH------HHHHH-----HHHHH----hcCCcEEEEEcCc
Confidence 457899999999999999999999998 566654 45421 11111 01111 1123688999999
Q ss_pred CCCcCCCCHHHHHHHhc-------------CccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhc-CCc
Q psy11859 295 LQANLGIKDSDLLMLQE-------------EVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKM-KKL 353 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~-------------~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~ 353 (851)
+|++ ++..+++ ++|+|||+||..... +.+...+++|+.|+.++++++... ...
T Consensus 66 ~d~~------~i~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ 139 (254)
T PRK12746 66 NSID------GVKKLVEQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAE 139 (254)
T ss_pred CCHH------HHHHHHHHHHHHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 9986 5554443 589999999975321 234567889999999999999763 223
Q ss_pred eEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----
Q psy11859 354 VAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----- 428 (851)
Q Consensus 354 ~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----- 428 (851)
.+||++||..++.. ..+. ..|+.||+..|.+++.++.
T Consensus 140 ~~~v~~sS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~~~~~~~~~ 181 (254)
T PRK12746 140 GRVINISSAEVRLG---------FTGS-----------------------------IAYGLSKGALNTMTLPLAKHLGER 181 (254)
T ss_pred CEEEEECCHHhcCC---------CCCC-----------------------------cchHhhHHHHHHHHHHHHHHHhhc
Confidence 58999999765431 1111 3499999999998766532
Q ss_pred CCCEEEEecccccCCCC
Q psy11859 429 KLPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 429 ~l~~~ivRp~~V~G~~~ 445 (851)
++++++++||.|.++..
T Consensus 182 ~i~v~~v~pg~~~t~~~ 198 (254)
T PRK12746 182 GITVNTIMPGYTKTDIN 198 (254)
T ss_pred CcEEEEEEECCccCcch
Confidence 79999999999988753
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.5e-15 Score=155.54 Aligned_cols=164 Identities=15% Similarity=0.160 Sum_probs=119.1
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+++||||||||+||++|+++|++.| .+|+++.|.... .+.+.+. +. ....++.++.+|+.++
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g---~~v~~~~r~~~~---~~~~~~~--------~~----~~~~~~~~~~~D~~~~ 62 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAG---ANVVVNDLGEAG---AEAAAKV--------AT----DAGGSVIYLVADVTKE 62 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------HH----hcCCceEEEECCCCCH
Confidence 4789999999999999999999998 689999997432 1222111 11 1123688999999987
Q ss_pred cCCCCHHHHHHH-------hcCccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHH----hcCCceEEEEe
Q psy11859 298 NLGIKDSDLLML-------QEEVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIAL----KMKKLVAFIHF 359 (851)
Q Consensus 298 ~lgls~~~~~~~-------~~~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV~v 359 (851)
+ ++..+ ..++|+|||+|+..... +.+++.+++|+.|+..+++++. +. ++++||++
T Consensus 63 ~------~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~~~v~~ 135 (255)
T TIGR01963 63 D------EIADMIAAAAAEFGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQ-GWGRIINI 135 (255)
T ss_pred H------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCeEEEEE
Confidence 5 44332 34689999999975431 2345678899999998888873 34 37899999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..+.... ... ..|+.+|...|.+++.++. ++++++
T Consensus 136 ss~~~~~~~---------~~~-----------------------------~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~ 177 (255)
T TIGR01963 136 ASAHGLVAS---------PFK-----------------------------SAYVAAKHGLIGLTKVLALEVAAHGITVNA 177 (255)
T ss_pred cchhhcCCC---------CCC-----------------------------chhHHHHHHHHHHHHHHHHHhhhcCeEEEE
Confidence 996443221 011 3499999999988876542 899999
Q ss_pred EecccccCCC
Q psy11859 435 VRPSIVLPSF 444 (851)
Q Consensus 435 vRp~~V~G~~ 444 (851)
+||+.|+++.
T Consensus 178 i~pg~v~~~~ 187 (255)
T TIGR01963 178 ICPGYVRTPL 187 (255)
T ss_pred EecCccccHH
Confidence 9999999875
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.7e-15 Score=155.77 Aligned_cols=213 Identities=20% Similarity=0.221 Sum_probs=133.9
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+++||||||||+||++++++|++.| ..|++..+... ++..+ ..+.+.. ...++.++.+|++++
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G---~~vv~~~~~~~-----~~~~~-----~~~~l~~----~~~~~~~~~~Dl~~~ 64 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERG---YAVCLNYLRNR-----DAAEA-----VVQAIRR----QGGEALAVAADVADE 64 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC---CeEEEecCCCH-----HHHHH-----HHHHHHh----CCCcEEEEEeccCCH
Confidence 5789999999999999999999998 45665554321 11111 1111211 123578899999987
Q ss_pred cCCCCHHHHHHHhc-------CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhcC------CceEE
Q psy11859 298 NLGIKDSDLLMLQE-------EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKMK------KLVAF 356 (851)
Q Consensus 298 ~lgls~~~~~~~~~-------~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~~------~~~~f 356 (851)
. ++..+++ .+|+|||+|+.... .+.+...+++|+.|+.++++++...- .-.++
T Consensus 65 ~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~i 138 (248)
T PRK06123 65 A------DVLRLFEAVDRELGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAI 138 (248)
T ss_pred H------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 6 5555543 68999999997532 12455789999999999998886531 12368
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~ 431 (851)
|++||..+... .|.. ...|+.||+..|.++..++. +++
T Consensus 139 v~~sS~~~~~~----------~~~~---------------------------~~~Y~~sKaa~~~~~~~la~~~~~~~i~ 181 (248)
T PRK06123 139 VNVSSMAARLG----------SPGE---------------------------YIDYAASKGAIDTMTIGLAKEVAAEGIR 181 (248)
T ss_pred EEECchhhcCC----------CCCC---------------------------ccchHHHHHHHHHHHHHHHHHhcccCeE
Confidence 99999643211 1111 02399999999998876642 899
Q ss_pred EEEEecccccCCCCC--CchhHhhhhcCCceEE-EEcccCceeEEEeecC----CCCccEEEEeCC
Q psy11859 432 VVIVRPSIVLPSFQE--PVPGWVDSLNGPVGVL-VASGKGVVRSMILNDL----STETQVFNISSN 490 (851)
Q Consensus 432 ~~ivRp~~V~G~~~~--p~p~~i~~~~~~~~~~-~~~g~~v~~~~~~~~~----~~~~~iyni~~~ 490 (851)
++++||+.|+++... ..|.+...+.+..++- .+..+++++++..... ...|++|+++++
T Consensus 182 v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~gg 247 (248)
T PRK06123 182 VNAVRPGVIYTEIHASGGEPGRVDRVKAGIPMGRGGTAEEVARAILWLLSDEASYTTGTFIDVSGG 247 (248)
T ss_pred EEEEecCcccCchhhccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEEeecCC
Confidence 999999999998542 2344444333322221 1222344443332111 134667777654
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-14 Score=151.81 Aligned_cols=171 Identities=16% Similarity=0.219 Sum_probs=120.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++||||||||+||+++++.|++.| .+|+++.|.... ..+.+ .+.+.. ...++.++.+|++
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G---~~v~~~~~~~~~--~~~~~--------~~~~~~----~~~~~~~~~~Dl~ 65 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQG---ANVVINYASSEA--GAEAL--------VAEIGA----LGGKALAVQGDVS 65 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCchh--HHHHH--------HHHHHh----cCCceEEEEcCCC
Confidence 367899999999999999999999998 678777775431 11111 111111 1247889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
+++ ++..+++ ++|+|||+|+..... +.+...+.+|+.|+.++++++... ...++||+
T Consensus 66 ~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~ 139 (248)
T PRK05557 66 DAE------SVERAVDEAKAEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIIN 139 (248)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 876 5544433 689999999975432 345677899999999999998753 13568999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+.... .+. ..|+.+|+..|.+++.++. +++++
T Consensus 140 iss~~~~~~~---------~~~-----------------------------~~y~~sk~a~~~~~~~~a~~~~~~~i~~~ 181 (248)
T PRK05557 140 ISSVVGLMGN---------PGQ-----------------------------ANYAASKAGVIGFTKSLARELASRGITVN 181 (248)
T ss_pred EcccccCcCC---------CCC-----------------------------chhHHHHHHHHHHHHHHHHHhhhhCeEEE
Confidence 9996432110 111 3499999999988876542 89999
Q ss_pred EEecccccCCCCCC
Q psy11859 434 IVRPSIVLPSFQEP 447 (851)
Q Consensus 434 ivRp~~V~G~~~~p 447 (851)
++||+.+.++...+
T Consensus 182 ~v~pg~~~~~~~~~ 195 (248)
T PRK05557 182 AVAPGFIETDMTDA 195 (248)
T ss_pred EEecCccCCccccc
Confidence 99999986654433
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-14 Score=158.29 Aligned_cols=199 Identities=16% Similarity=0.155 Sum_probs=120.8
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
.+++|+||||+|+||.++++.|++.| .+|+++.|.... ..++. +.+. ....++.++.+|+++
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G---~~V~~~~r~~~~------~~~~~-----~~l~----~~~~~~~~~~~Dl~~ 66 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRG---WHVIMACRNLKK------AEAAA-----QELG----IPPDSYTIIHIDLGD 66 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCC---CEEEEEECCHHH------HHHHH-----HHhh----ccCCceEEEEecCCC
Confidence 57899999999999999999999998 688888886421 11110 1111 112368899999998
Q ss_pred CcCCCCHHHHHHHhc-------CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhc----C-CceEE
Q psy11859 297 ANLGIKDSDLLMLQE-------EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKM----K-KLVAF 356 (851)
Q Consensus 297 ~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~-~~~~f 356 (851)
.+ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... + ...++
T Consensus 67 ~~------~v~~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~ri 140 (322)
T PRK07453 67 LD------SVRRFVDDFRALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRL 140 (322)
T ss_pred HH------HHHHHHHHHHHhCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceE
Confidence 76 5554443 48999999996421 1346678999999999998888642 1 12589
Q ss_pred EEeeeeeeeCCC--cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC------
Q psy11859 357 IHFSTAFCHPDQ--KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT------ 428 (851)
Q Consensus 357 V~vSTa~~~~~~--~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~------ 428 (851)
|++||...+... .... .+.+.+..++.......... ........ ....+.|+.||++.+.+...+++
T Consensus 141 V~vsS~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~Y~~SK~a~~~~~~~la~~~~~~~ 215 (322)
T PRK07453 141 VILGTVTANPKELGGKIP---IPAPADLGDLSGFEAGFKAP-ISMADGKK-FKPGKAYKDSKLCNMLTMRELHRRYHEST 215 (322)
T ss_pred EEEcccccCccccCCccC---CCCccchhhhhcchhccccc-ccccCccC-CCccchhhHhHHHHHHHHHHHHHhhcccC
Confidence 999997554311 0000 00011110000000000000 00000000 01136799999988776655432
Q ss_pred CCCEEEEecccccCCC
Q psy11859 429 KLPVVIVRPSIVLPSF 444 (851)
Q Consensus 429 ~l~~~ivRp~~V~G~~ 444 (851)
++.++.+|||+|+++.
T Consensus 216 gi~v~~v~PG~v~~t~ 231 (322)
T PRK07453 216 GITFSSLYPGCVADTP 231 (322)
T ss_pred CeEEEEecCCcccCCc
Confidence 6899999999998654
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-14 Score=152.75 Aligned_cols=178 Identities=21% Similarity=0.252 Sum_probs=119.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|+++.|..... .+.. +.+....+ ...+.++.+|++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g---~~v~~~~r~~~~~--~~~~---------~~l~~~~~--~~~~~~~~~Dl~ 65 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAG---GIVIAADIDKEAL--NELL---------ESLGKEFK--SKKLSLVELDIT 65 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEecChHHH--HHHH---------HHHHhhcC--CCceeEEEecCC
Confidence 578999999999999999999999998 6788888764321 1111 11211111 135678899999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCC------c----chhHHHHHHHHHHHHHHHHHHHHhc---CCceE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLK------L----EAELKENVAANTRGTQRLLDIALKM---KKLVA 355 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~------~----~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~ 355 (851)
|++ ++..+++ .+|+|||+|+... + .+.+...+++|+.|+..+++++... .+..+
T Consensus 66 d~~------~~~~~~~~~~~~~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 139 (256)
T PRK09186 66 DQE------SLEEFLSKSAEKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGN 139 (256)
T ss_pred CHH------HHHHHHHHHHHHcCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCce
Confidence 986 6655554 3899999997432 1 1345677899998888777666532 13579
Q ss_pred EEEeeeeeeeCCCc-ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C
Q psy11859 356 FIHFSTAFCHPDQK-VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K 429 (851)
Q Consensus 356 fV~vSTa~~~~~~~-~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~ 429 (851)
+|++||.++..... .+.|..... .+..|+.||+..|.+.+..+. +
T Consensus 140 iv~~sS~~~~~~~~~~~~~~~~~~-----------------------------~~~~Y~~sK~a~~~l~~~la~e~~~~~ 190 (256)
T PRK09186 140 LVNISSIYGVVAPKFEIYEGTSMT-----------------------------SPVEYAAIKAGIIHLTKYLAKYFKDSN 190 (256)
T ss_pred EEEEechhhhccccchhccccccC-----------------------------CcchhHHHHHHHHHHHHHHHHHhCcCC
Confidence 99999976543211 111111111 123499999999998865433 7
Q ss_pred CCEEEEecccccCCC
Q psy11859 430 LPVVIVRPSIVLPSF 444 (851)
Q Consensus 430 l~~~ivRp~~V~G~~ 444 (851)
+.+.+++|+.++++.
T Consensus 191 i~v~~i~Pg~~~~~~ 205 (256)
T PRK09186 191 IRVNCVSPGGILDNQ 205 (256)
T ss_pred eEEEEEecccccCCC
Confidence 999999999888653
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-14 Score=151.81 Aligned_cols=167 Identities=19% Similarity=0.203 Sum_probs=121.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++||||||+|+||++++++|++.| .+|.+++|.... .+.+. ++.+.. ++.++.+|++
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g---~~V~~~~r~~~~---~~~~~------------~~~~~~--~~~~~~~D~~ 68 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAG---ARVHVCDVSEAA---LAATA------------ARLPGA--KVTATVADVA 68 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHH------------HHHhcC--ceEEEEccCC
Confidence 688999999999999999999999998 678999986432 11111 111111 6789999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhc---CCc-eEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKM---KKL-VAF 356 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~-~~f 356 (851)
+++ ++..++ .++|+|||+||.... .+.+.+.+++|+.|+.++++++... .+. ..|
T Consensus 69 ~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~v 142 (264)
T PRK12829 69 DPA------QVERVFDTAVERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVI 142 (264)
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEE
Confidence 876 554443 368999999997621 1345688999999999999987431 123 678
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~ 431 (851)
|++||..+... ..+. ..|+.+|+..|.++..++. +++
T Consensus 143 v~~ss~~~~~~---------~~~~-----------------------------~~y~~~K~a~~~~~~~l~~~~~~~~i~ 184 (264)
T PRK12829 143 IALSSVAGRLG---------YPGR-----------------------------TPYAASKWAVVGLVKSLAIELGPLGIR 184 (264)
T ss_pred EEecccccccC---------CCCC-----------------------------chhHHHHHHHHHHHHHHHHHHhhcCeE
Confidence 88887543211 0111 2399999999999877642 899
Q ss_pred EEEEecccccCCCCC
Q psy11859 432 VVIVRPSIVLPSFQE 446 (851)
Q Consensus 432 ~~ivRp~~V~G~~~~ 446 (851)
++++|||.|+|+...
T Consensus 185 ~~~l~pg~v~~~~~~ 199 (264)
T PRK12829 185 VNAILPGIVRGPRMR 199 (264)
T ss_pred EEEEecCCcCChHHH
Confidence 999999999998643
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-14 Score=152.00 Aligned_cols=182 Identities=18% Similarity=0.171 Sum_probs=127.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++||||||+|+||+++++.|++.| .+|+++.|.... .+.+. +.+. ....++.++.+|++
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~--------~~i~----~~~~~~~~~~~Dl~ 71 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAG---ARVVLSARKAEE---LEEAA--------AHLE----ALGIDALWIAADVA 71 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcC---CEEEEEeCCHHH---HHHHH--------HHHH----hcCCeEEEEEccCC
Confidence 468999999999999999999999988 578888886421 11111 1111 11236788999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc----CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM----KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~~~~~fV 357 (851)
|++ ++..++ ..+|+|||+|+.... .+.+++.+++|+.|+.++++++... ++..+||
T Consensus 72 d~~------~i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v 145 (259)
T PRK08213 72 DEA------DIERLAEETLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRII 145 (259)
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 886 554333 358999999996422 2345677899999999999988654 2367999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+.....+. ..+ ...|+.||+..|.+++.++. ++++
T Consensus 146 ~~sS~~~~~~~~~~-----~~~-----------------------------~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v 191 (259)
T PRK08213 146 NVASVAGLGGNPPE-----VMD-----------------------------TIAYNTSKGAVINFTRALAAEWGPHGIRV 191 (259)
T ss_pred EECChhhccCCCcc-----ccC-----------------------------cchHHHHHHHHHHHHHHHHHHhcccCEEE
Confidence 99996543221100 011 13499999999999987643 7899
Q ss_pred EEEecccccCCCCC-CchhHhhhh
Q psy11859 433 VIVRPSIVLPSFQE-PVPGWVDSL 455 (851)
Q Consensus 433 ~ivRp~~V~G~~~~-p~p~~i~~~ 455 (851)
.+++|+.+-.+... .++.+.+.+
T Consensus 192 ~~v~Pg~~~t~~~~~~~~~~~~~~ 215 (259)
T PRK08213 192 NAIAPGFFPTKMTRGTLERLGEDL 215 (259)
T ss_pred EEEecCcCCCcchhhhhHHHHHHH
Confidence 99999998766433 245555543
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-14 Score=153.72 Aligned_cols=168 Identities=17% Similarity=0.167 Sum_probs=123.5
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
++++|+||||||||+||++|+++|++.| .+|+++.|.... .+.+. ..+.. ...++.++.+|+
T Consensus 2 ~l~~k~vlItGa~~~IG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~--------~~~~~----~~~~~~~~~~D~ 63 (258)
T PRK07890 2 LLKGKVVVVSGVGPGLGRTLAVRAARAG---ADVVLAARTAER---LDEVA--------AEIDD----LGRRALAVPTDI 63 (258)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHcC---CEEEEEeCCHHH---HHHHH--------HHHHH----hCCceEEEecCC
Confidence 4678999999999999999999999998 688888886432 11111 11111 123688999999
Q ss_pred CCCcCCCCHHHHHHHh-------cCccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhcC--CceEEE
Q psy11859 295 LQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKMK--KLVAFI 357 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~~--~~~~fV 357 (851)
++++ ++..++ .++|+|||+|+.... .+.+...+++|+.|+..+++++...- ...+||
T Consensus 64 ~~~~------~~~~~~~~~~~~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii 137 (258)
T PRK07890 64 TDED------QCANLVALALERFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIV 137 (258)
T ss_pred CCHH------HHHHHHHHHHHHcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEE
Confidence 9876 554433 368999999986422 14556789999999999999997531 124899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+..+ ..+. +.|+.+|...|.+++.++. ++++
T Consensus 138 ~~sS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~l~~~~a~~~~~~~i~v 179 (258)
T PRK07890 138 MINSMVLRHS---------QPKY-----------------------------GAYKMAKGALLAASQSLATELGPQGIRV 179 (258)
T ss_pred EEechhhccC---------CCCc-----------------------------chhHHHHHHHHHHHHHHHHHHhhcCcEE
Confidence 9999644221 1111 3499999999999987753 7999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
.++|||.|+++.
T Consensus 180 ~~v~pg~v~~~~ 191 (258)
T PRK07890 180 NSVAPGYIWGDP 191 (258)
T ss_pred EEEeCCccCcHH
Confidence 999999999985
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-14 Score=153.72 Aligned_cols=158 Identities=20% Similarity=0.255 Sum_probs=121.4
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++++|+||||||+||++++++|++.| .+|+++.|...... ...+++++.+|++|
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g---~~V~~~~r~~~~~~-----------------------~~~~~~~~~~D~~d 56 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAG---YRVFGTSRNPARAA-----------------------PIPGVELLELDVTD 56 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCC---CEEEEEeCChhhcc-----------------------ccCCCeeEEeecCC
Confidence 46789999999999999999999998 67999998753210 11367899999998
Q ss_pred CcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHH----hcCCceEEEE
Q psy11859 297 ANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIAL----KMKKLVAFIH 358 (851)
Q Consensus 297 ~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV~ 358 (851)
++ ++..+++ .+|+|||+||.... .+.++..+++|+.|+.++++++. +. +..++|+
T Consensus 57 ~~------~~~~~~~~~~~~~g~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~~iv~ 129 (270)
T PRK06179 57 DA------SVQAAVDEVIARAGRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQ-GSGRIIN 129 (270)
T ss_pred HH------HHHHHHHHHHHhCCCCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEE
Confidence 86 6666554 47999999997543 23457889999999999998863 33 4789999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ 433 (851)
+||.++... .|. ...|+.||+..|.++...+ . +++++
T Consensus 130 isS~~~~~~----------~~~----------------------------~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~ 171 (270)
T PRK06179 130 ISSVLGFLP----------APY----------------------------MALYAASKHAVEGYSESLDHEVRQFGIRVS 171 (270)
T ss_pred ECCccccCC----------CCC----------------------------ccHHHHHHHHHHHHHHHHHHHHhhhCcEEE
Confidence 999755321 111 1349999999999887653 2 89999
Q ss_pred EEecccccCCCC
Q psy11859 434 IVRPSIVLPSFQ 445 (851)
Q Consensus 434 ivRp~~V~G~~~ 445 (851)
++|||.+.++..
T Consensus 172 ~v~pg~~~t~~~ 183 (270)
T PRK06179 172 LVEPAYTKTNFD 183 (270)
T ss_pred EEeCCCcccccc
Confidence 999999887643
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-14 Score=153.12 Aligned_cols=165 Identities=18% Similarity=0.130 Sum_probs=119.4
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
.++||+|+||||+|+||+++++.|++.| .+|.+++|.... .+.+. + ....++.++.+|+
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g---~~v~~~~~~~~~---~~~~~------------~---~~~~~~~~~~~Dl 65 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEG---WQVVLADLDRER---GSKVA------------K---ALGENAWFIAMDV 65 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcC---CEEEEEcCCHHH---HHHHH------------H---HcCCceEEEEccC
Confidence 4678999999999999999999999998 678888775321 11110 0 0123678999999
Q ss_pred CCCcCCCCHHHHHHHh-------cCccEEEEccccCCc---------chhHHHHHHHHHHHHHHHHHHHHhc--CCceEE
Q psy11859 295 LQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL---------EAELKENVAANTRGTQRLLDIALKM--KKLVAF 356 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~---------~~~~~~~~~~Nv~Gt~~ll~~a~~~--~~~~~f 356 (851)
++++ ++..++ ..+|+|||+||.... .+.+...+++|+.|+.++++++... ....++
T Consensus 66 ~~~~------~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~i 139 (255)
T PRK05717 66 ADEA------QVAAGVAEVLGQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAI 139 (255)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEE
Confidence 9876 443322 258999999997532 1345678999999999999999642 123578
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----CCCE
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----KLPV 432 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----~l~~ 432 (851)
|++||..+... .|. .+.|+.||+..|.+++.++. ++.+
T Consensus 140 i~~sS~~~~~~----------~~~----------------------------~~~Y~~sKaa~~~~~~~la~~~~~~i~v 181 (255)
T PRK05717 140 VNLASTRARQS----------EPD----------------------------TEAYAASKGGLLALTHALAISLGPEIRV 181 (255)
T ss_pred EEEcchhhcCC----------CCC----------------------------CcchHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 99988644221 111 13499999999988877643 6899
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
.+++||.|.++.
T Consensus 182 ~~i~Pg~i~t~~ 193 (255)
T PRK05717 182 NAVSPGWIDARD 193 (255)
T ss_pred EEEecccCcCCc
Confidence 999999998864
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-14 Score=157.87 Aligned_cols=176 Identities=14% Similarity=0.179 Sum_probs=119.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++|+||||||+||.+++++|++.| .+|+++.|.... ..+.. +.+ .++.++.+|++
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G---~~Vv~~~R~~~~------~~~~~-----~~l--------~~v~~~~~Dl~ 81 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAG---AHVIVPARRPDV------AREAL-----AGI--------DGVEVVMLDLA 81 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHH------HHHHH-----HHh--------hhCeEEEccCC
Confidence 478999999999999999999999998 678888886421 11110 011 13778999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-----chhHHHHHHHHHHHHHHHHHHHH----hcCCceEEEEe
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-----EAELKENVAANTRGTQRLLDIAL----KMKKLVAFIHF 359 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-----~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV~v 359 (851)
|.+ ++..++ .++|+|||+||.... .+.++..+++|+.|+..+++++. +.+ ..++|++
T Consensus 82 d~~------~v~~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~v 154 (315)
T PRK06196 82 DLE------SVRAFAERFLDSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVAL 154 (315)
T ss_pred CHH------HHHHHHHHHHhcCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEE
Confidence 876 555443 368999999996432 23456789999999766666443 333 4689999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..........++..+..+..+ .+.|+.||+..+.+...++. ++.+++
T Consensus 155 SS~~~~~~~~~~~~~~~~~~~~~--------------------------~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~ 208 (315)
T PRK06196 155 SSAGHRRSPIRWDDPHFTRGYDK--------------------------WLAYGQSKTANALFAVHLDKLGKDQGVRAFS 208 (315)
T ss_pred CCHHhccCCCCccccCccCCCCh--------------------------HHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 99643221111111000111111 14599999999988766532 899999
Q ss_pred EecccccCCCCC
Q psy11859 435 VRPSIVLPSFQE 446 (851)
Q Consensus 435 vRp~~V~G~~~~ 446 (851)
+|||.|.++...
T Consensus 209 v~PG~v~t~~~~ 220 (315)
T PRK06196 209 VHPGGILTPLQR 220 (315)
T ss_pred eeCCcccCCccc
Confidence 999999988543
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=154.12 Aligned_cols=172 Identities=15% Similarity=0.159 Sum_probs=119.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++||||||+||||++++++|++.| .+|+++.|.... ..+.+.. .+.. ...++.++.+|++
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G---~~V~~~~r~~~~--~~~~~~~--------~l~~----~~~~~~~~~~D~~ 66 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAG---AHVVVNYRQKAP--RANKVVA--------EIEA----AGGRASAVGADLT 66 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCC---CEEEEEeCCchH--hHHHHHH--------HHHh----cCCceEEEEcCCC
Confidence 467899999999999999999999988 678888886432 1111111 1111 1236788999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEeeeeeeeC
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKM-KKLVAFIHFSTAFCHP 366 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~vSTa~~~~ 366 (851)
+++ ++..+++ ++|+|||+|+.... ...+...+++|+.|+.++++++.+. ..-.++|++||..+..
T Consensus 67 ~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~ 140 (248)
T PRK07806 67 DEE------SVAALMDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHF 140 (248)
T ss_pred CHH------HHHHHHHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhc
Confidence 886 5554443 68999999986432 2245567889999999999999864 2235899999953321
Q ss_pred CCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEeccccc
Q psy11859 367 DQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVRPSIVL 441 (851)
Q Consensus 367 ~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivRp~~V~ 441 (851)
.. ..+ +.|. ...|+.||+.+|.+++.++. ++++.+++|+.+-
T Consensus 141 ~~--~~~---~~~~----------------------------~~~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~ 187 (248)
T PRK07806 141 IP--TVK---TMPE----------------------------YEPVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIE 187 (248)
T ss_pred Cc--ccc---CCcc----------------------------ccHHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCcccc
Confidence 00 000 0110 13499999999999987632 7899999998877
Q ss_pred CC
Q psy11859 442 PS 443 (851)
Q Consensus 442 G~ 443 (851)
++
T Consensus 188 ~~ 189 (248)
T PRK07806 188 GT 189 (248)
T ss_pred Cc
Confidence 65
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-14 Score=153.97 Aligned_cols=167 Identities=15% Similarity=0.167 Sum_probs=119.9
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++++||||||||+||+.+++.|+++| .+|++++|..... +.+.+ .+... ....+++++.+|++|
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G---~~V~~~~r~~~~~---~~~~~--------~~~~~--~~~~~~~~~~~D~~d 65 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKG---YLVIATMRNPEKQ---ENLLS--------QATQL--NLQQNIKVQQLDVTD 65 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCC---CEEEEEeCCHHHH---HHHHH--------HHHhc--CCCCceeEEecCCCC
Confidence 57899999999999999999999998 6888888874321 11111 01111 112478999999999
Q ss_pred CcCCCCHHHHHH---H---hcCccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHH----hcCCceEEEEe
Q psy11859 297 ANLGIKDSDLLM---L---QEEVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIAL----KMKKLVAFIHF 359 (851)
Q Consensus 297 ~~lgls~~~~~~---~---~~~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV~v 359 (851)
++ ++.. + ...+|+|||+|+..... +.+...+++|+.|+.++++.+. +. +..+||++
T Consensus 66 ~~------~~~~~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~v 138 (280)
T PRK06914 66 QN------SIHNFQLVLKEIGRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQ-KSGKIINI 138 (280)
T ss_pred HH------HHHHHHHHHHhcCCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEE
Confidence 86 4432 2 23689999999875421 3456778999999999988863 33 36789999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~i 434 (851)
||..+... ..+. ..|+.||+..|.+++.++ . ++++++
T Consensus 139 sS~~~~~~---------~~~~-----------------------------~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~ 180 (280)
T PRK06914 139 SSISGRVG---------FPGL-----------------------------SPYVSSKYALEGFSESLRLELKPFGIDVAL 180 (280)
T ss_pred CcccccCC---------CCCC-----------------------------chhHHhHHHHHHHHHHHHHHhhhhCCEEEE
Confidence 99644221 1122 349999999999887764 2 899999
Q ss_pred EecccccCCC
Q psy11859 435 VRPSIVLPSF 444 (851)
Q Consensus 435 vRp~~V~G~~ 444 (851)
+|||.+.++.
T Consensus 181 v~pg~~~t~~ 190 (280)
T PRK06914 181 IEPGSYNTNI 190 (280)
T ss_pred EecCCcccch
Confidence 9999998763
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.2e-14 Score=154.42 Aligned_cols=170 Identities=15% Similarity=0.165 Sum_probs=122.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++..+...... .+.+.+ .+.. ...++.++.+|++
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G---~~V~i~~~~~~~~~-~~~~~~--------~~~~----~~~~~~~~~~Dl~ 116 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREG---ADIALNYLPEEEQD-AAEVVQ--------LIQA----EGRKAVALPGDLK 116 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcC---CEEEEEeCCcchHH-HHHHHH--------HHHH----cCCeEEEEecCCC
Confidence 678999999999999999999999998 56766666433211 111111 1111 1236788999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCC----c----chhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEe
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLK----L----EAELKENVAANTRGTQRLLDIALKM-KKLVAFIHF 359 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~----~----~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~v 359 (851)
+++ ++..++ .++|+|||+|+... + .+.+...+++|+.|+.++++++... ..-.++|++
T Consensus 117 ~~~------~v~~~~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 117 DEA------FCRQLVERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 876 544443 36899999999642 1 2456788999999999999999753 112589999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..++... ... ..|+.||+..+.+++.++. ++.+.+
T Consensus 191 sS~~~~~~~---------~~~-----------------------------~~Y~asK~a~~~~~~~la~el~~~gI~v~~ 232 (300)
T PRK06128 191 GSIQSYQPS---------PTL-----------------------------LDYASTKAAIVAFTKALAKQVAEKGIRVNA 232 (300)
T ss_pred CCccccCCC---------CCc-----------------------------hhHHHHHHHHHHHHHHHHHHhhhcCcEEEE
Confidence 997655321 111 2399999999999877643 899999
Q ss_pred EecccccCCCC
Q psy11859 435 VRPSIVLPSFQ 445 (851)
Q Consensus 435 vRp~~V~G~~~ 445 (851)
++||.|.++..
T Consensus 233 v~PG~i~t~~~ 243 (300)
T PRK06128 233 VAPGPVWTPLQ 243 (300)
T ss_pred EEECcCcCCCc
Confidence 99999998864
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-14 Score=152.10 Aligned_cols=168 Identities=18% Similarity=0.185 Sum_probs=123.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||+.++++|++.| .+|+++.|.... ++++ .+.++. ...++.++.+|++
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G---~~V~~~~r~~~~------~~~~-----~~~i~~----~~~~~~~~~~D~~ 69 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAG---AEVILNGRDPAK------LAAA-----AESLKG----QGLSAHALAFDVT 69 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcC---CEEEEEeCCHHH------HHHH-----HHHHHh----cCceEEEEEccCC
Confidence 578999999999999999999999998 678888886421 1111 111211 1235888999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
+++ ++..+++ .+|+|||+||.... .+.++..+++|+.|+.++++++.+. ....++|+
T Consensus 70 ~~~------~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~ 143 (255)
T PRK07523 70 DHD------AVRAAIDAFEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIIN 143 (255)
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 876 6665543 48999999997542 1345677899999999999998753 13578999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... ..+. ..|+.||...|.+++.++. ++++.
T Consensus 144 iss~~~~~~---------~~~~-----------------------------~~y~~sK~a~~~~~~~~a~e~~~~gi~v~ 185 (255)
T PRK07523 144 IASVQSALA---------RPGI-----------------------------APYTATKGAVGNLTKGMATDWAKHGLQCN 185 (255)
T ss_pred EccchhccC---------CCCC-----------------------------ccHHHHHHHHHHHHHHHHHHhhHhCeEEE
Confidence 999643211 1112 3499999999999877642 89999
Q ss_pred EEecccccCCCC
Q psy11859 434 IVRPSIVLPSFQ 445 (851)
Q Consensus 434 ivRp~~V~G~~~ 445 (851)
++||+.+.++..
T Consensus 186 ~i~pg~~~t~~~ 197 (255)
T PRK07523 186 AIAPGYFDTPLN 197 (255)
T ss_pred EEEECcccCchh
Confidence 999999998864
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-14 Score=154.23 Aligned_cols=163 Identities=16% Similarity=0.154 Sum_probs=113.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++||||||+||||++|+++|++.| .+|++++|.... .++.. +.+. ....++.++.+|++
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~--------~~~~----~~~~~~~~~~~D~~ 65 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALG---MKLVLADVQQDA---LDRAV--------AELR----AQGAEVLGVRTDVS 65 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCC---CEEEEEeCChHH---HHHHH--------HHHH----hcCCeEEEEECCCC
Confidence 457899999999999999999999998 678888885432 11111 1111 11236888999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHH----hcCC-----
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIAL----KMKK----- 352 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~----~~~~----- 352 (851)
|++ ++..+++ .+|+|||+||..... +.++..+++|+.|+.++++++. +.+.
T Consensus 66 d~~------~~~~~~~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~ 139 (287)
T PRK06194 66 DAA------QVEALADAALERFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAY 139 (287)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 876 6665554 589999999986431 3456679999999999877743 3321
Q ss_pred ceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----
Q psy11859 353 LVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT---- 428 (851)
Q Consensus 353 ~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~---- 428 (851)
..++|++||.+++... .+. +.|+.||+..|.+++.++.
T Consensus 140 ~g~iv~~sS~~~~~~~---------~~~-----------------------------~~Y~~sK~a~~~~~~~l~~e~~~ 181 (287)
T PRK06194 140 EGHIVNTASMAGLLAP---------PAM-----------------------------GIYNVSKHAVVSLTETLYQDLSL 181 (287)
T ss_pred CeEEEEeCChhhccCC---------CCC-----------------------------cchHHHHHHHHHHHHHHHHHHhh
Confidence 1589999997664321 112 3499999999999987654
Q ss_pred ---CCCEEEEecccc
Q psy11859 429 ---KLPVVIVRPSIV 440 (851)
Q Consensus 429 ---~l~~~ivRp~~V 440 (851)
++.+..+.|+.|
T Consensus 182 ~~~~irv~~v~pg~i 196 (287)
T PRK06194 182 VTDQVGASVLCPYFV 196 (287)
T ss_pred cCCCeEEEEEEeCcc
Confidence 244445555444
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.4e-14 Score=149.83 Aligned_cols=166 Identities=18% Similarity=0.192 Sum_probs=121.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++||||||+|+||++|+++|++.| .+|+++.|..... .+... .+. ...++.++.+|++
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G---~~v~~~~r~~~~~--~~~~~---------~~~-----~~~~~~~~~~D~~ 63 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREG---ARVVVADRDAEAA--ERVAA---------AIA-----AGGRAFARQGDVG 63 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCC---CeEEEecCCHHHH--HHHHH---------HHh-----cCCeEEEEEcCCC
Confidence 468999999999999999999999988 6788888864321 11111 111 1236889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHH----hcCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIAL----KMKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV 357 (851)
|++ ++..+++ ++|+|||+|+.... .+.+...+++|+.|+.++.+++. +. +..+||
T Consensus 64 ~~~------~~~~~~~~i~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii 136 (252)
T PRK06138 64 SAE------AVEALVDFVAARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQ-GGGSIV 136 (252)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhc-CCeEEE
Confidence 886 5555443 68999999997542 13456679999999988777654 33 367999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+... ..+. +.|+.+|+..+.+++.++. ++++
T Consensus 137 ~~sS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~l~~~~~~~~i~v 178 (252)
T PRK06138 137 NTASQLALAG---------GRGR-----------------------------AAYVASKGAIASLTRAMALDHATDGIRV 178 (252)
T ss_pred EECChhhccC---------CCCc-----------------------------cHHHHHHHHHHHHHHHHHHHHHhcCeEE
Confidence 9999644321 1112 3499999999999877642 8999
Q ss_pred EEEecccccCCCC
Q psy11859 433 VIVRPSIVLPSFQ 445 (851)
Q Consensus 433 ~ivRp~~V~G~~~ 445 (851)
+++|||.+.++..
T Consensus 179 ~~v~pg~~~t~~~ 191 (252)
T PRK06138 179 NAVAPGTIDTPYF 191 (252)
T ss_pred EEEEECCccCcch
Confidence 9999999988853
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-14 Score=153.07 Aligned_cols=213 Identities=17% Similarity=0.157 Sum_probs=134.0
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
.+|+||||||+|+||++++++|++.| ..|+++.+.... ..+.+. ..++. ...++.++.+|++|
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g---~~v~~~~~~~~~--~~~~~~--------~~~~~----~~~~~~~~~~Dl~d 70 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHG---FDVAVHYNRSRD--EAEALA--------AEIRA----LGRRAVALQADLAD 70 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCCHH--HHHHHH--------HHHHh----cCCeEEEEEcCCCC
Confidence 57899999999999999999999988 577777664321 111111 11111 12368899999998
Q ss_pred CcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhcC---CceEEEEe
Q psy11859 297 ANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKMK---KLVAFIHF 359 (851)
Q Consensus 297 ~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~---~~~~fV~v 359 (851)
.+ ++..+++ .+|+|||+||.... .+.+...+++|+.|+.++++++.... .-.++|++
T Consensus 71 ~~------~~~~~~~~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ 144 (258)
T PRK09134 71 EA------EVRALVARASAALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNM 144 (258)
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 76 5554433 58999999986432 23566789999999999999887532 13477877
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----CCCEEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----KLPVVIV 435 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----~l~~~iv 435 (851)
||..... +.|.. ..|+.||+..|.+++.++. ++.+..+
T Consensus 145 ~s~~~~~----------~~p~~----------------------------~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i 186 (258)
T PRK09134 145 IDQRVWN----------LNPDF----------------------------LSYTLSKAALWTATRTLAQALAPRIRVNAI 186 (258)
T ss_pred CchhhcC----------CCCCc----------------------------hHHHHHHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 7743221 11211 2499999999998887653 5899999
Q ss_pred ecccccCCCCCCchhHhhhhcCCceEEEEcccCceeEEEeecC--CCCccEEEEeCC
Q psy11859 436 RPSIVLPSFQEPVPGWVDSLNGPVGVLVASGKGVVRSMILNDL--STETQVFNISSN 490 (851)
Q Consensus 436 Rp~~V~G~~~~p~p~~i~~~~~~~~~~~~~g~~v~~~~~~~~~--~~~~~iyni~~~ 490 (851)
+||.|..+.....+.+.........-......++++++....+ ...+++|++.+|
T Consensus 187 ~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~~g~~~~i~gg 243 (258)
T PRK09134 187 GPGPTLPSGRQSPEDFARQHAATPLGRGSTPEEIAAAVRYLLDAPSVTGQMIAVDGG 243 (258)
T ss_pred ecccccCCcccChHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCcCCCEEEECCC
Confidence 9999876543222333332221110001112344443333222 235678888777
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-14 Score=152.63 Aligned_cols=222 Identities=17% Similarity=0.141 Sum_probs=147.3
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+++||||||||+||+.+++.|++.| .+|++++|.... .+.+. ..+ ...++.++.+|+.++
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g---~~v~~~~r~~~~---~~~~~--------~~~------~~~~~~~~~~D~~~~ 61 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAG---DRVLALDIDAAA---LAAFA--------DAL------GDARFVPVACDLTDA 61 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHH--------HHh------cCCceEEEEecCCCH
Confidence 5789999999999999999999988 688999886422 11111 111 013688999999988
Q ss_pred cCCCCHHHHHHHhc-------CccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEee
Q psy11859 298 NLGIKDSDLLMLQE-------EVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKM---KKLVAFIHFS 360 (851)
Q Consensus 298 ~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~vS 360 (851)
+ ++..+++ ++|+|||+||..... +.+...+.+|+.|+.++++++... .+..+||++|
T Consensus 62 ~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~s 135 (257)
T PRK07074 62 A------SLAAALANAAAERGPVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIG 135 (257)
T ss_pred H------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEc
Confidence 6 5554443 589999999975421 233456789999999999988431 1357899999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~iv 435 (851)
|..+... + .. ..|+.||+..|.+++.++. +++++++
T Consensus 136 S~~~~~~--------~--~~-----------------------------~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v 176 (257)
T PRK07074 136 SVNGMAA--------L--GH-----------------------------PAYSAAKAGLIHYTKLLAVEYGRFGIRANAV 176 (257)
T ss_pred chhhcCC--------C--CC-----------------------------cccHHHHHHHHHHHHHHHHHHhHhCeEEEEE
Confidence 9543211 0 01 1399999999998887753 7999999
Q ss_pred ecccccCCCCCC----chhHhhhhcCCce-EEEEcccCceeEEEeecC----CCCccEEEEeCCCCccccHHHHHHHHHH
Q psy11859 436 RPSIVLPSFQEP----VPGWVDSLNGPVG-VLVASGKGVVRSMILNDL----STETQVFNISSNEVEAITWGEIISRGKQ 506 (851)
Q Consensus 436 Rp~~V~G~~~~p----~p~~i~~~~~~~~-~~~~~g~~v~~~~~~~~~----~~~~~iyni~~~~~~~~t~~el~~~~~~ 506 (851)
|||.+.++.... .+.+.+......+ .-+....|+++++..... ...|.++++++| .....+|+++.+.+
T Consensus 177 ~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g--~~~~~~~~~~~~~~ 254 (257)
T PRK07074 177 APGTVKTQAWEARVAANPQVFEELKKWYPLQDFATPDDVANAVLFLASPAARAITGVCLPVDGG--LTAGNREMARTLTL 254 (257)
T ss_pred EeCcCCcchhhcccccChHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCchhcCcCCcEEEeCCC--cCcCChhhhhhhcc
Confidence 999999875321 2334333221111 111223455554443332 224678888888 56778898887654
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-14 Score=150.96 Aligned_cols=168 Identities=20% Similarity=0.247 Sum_probs=119.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
.++++||||||+|+||+++++.|++.| .+|+++.|+... ..+.+. +.+. ....++.++.+|++
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g---~~v~~~~~~~~~--~~~~~~--------~~~~----~~~~~~~~~~~Dl~ 65 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADG---FAVAVNYAGSAA--AADELV--------AEIE----AAGGRAIAVQADVA 65 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEecCCCHH--HHHHHH--------HHHH----hcCCeEEEEECCCC
Confidence 467899999999999999999999998 567666664321 111111 1111 12247889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEee
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM-KKLVAFIHFS 360 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~vS 360 (851)
+++ ++..+++ ++|+|||+|+.... .+.++..+++|+.|+.++++++.+. ..-.++|++|
T Consensus 66 ~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 139 (245)
T PRK12937 66 DAA------AVTRLFDAAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLS 139 (245)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEe
Confidence 876 5655544 68999999997542 2345677999999999999888653 2224899999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~iv 435 (851)
|...... ..+. +.|+.||...|.+++.++. ++.++++
T Consensus 140 s~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i 181 (245)
T PRK12937 140 TSVIALP---------LPGY-----------------------------GPYAASKAAVEGLVHVLANELRGRGITVNAV 181 (245)
T ss_pred eccccCC---------CCCC-----------------------------chhHHHHHHHHHHHHHHHHHhhhcCeEEEEE
Confidence 8543211 1111 3499999999999876642 7899999
Q ss_pred ecccccCCC
Q psy11859 436 RPSIVLPSF 444 (851)
Q Consensus 436 Rp~~V~G~~ 444 (851)
+||.|-.+.
T Consensus 182 ~pg~~~t~~ 190 (245)
T PRK12937 182 APGPVATEL 190 (245)
T ss_pred EeCCccCch
Confidence 999887664
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-14 Score=152.99 Aligned_cols=165 Identities=16% Similarity=0.187 Sum_probs=120.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+.+++||||||+|+||.++++.|++.| .+|++++|.... .+.+.+ ....++.++.+|++
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G---~~v~~~~r~~~~---~~~~~~---------------~~~~~~~~~~~D~~ 62 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEG---ARVVIADIKPAR---ARLAAL---------------EIGPAAIAVSLDVT 62 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcC---CEEEEEcCCHHH---HHHHHH---------------HhCCceEEEEccCC
Confidence 457899999999999999999999998 688888886432 111111 01135888999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhcC----CceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKMK----KLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~----~~~~fV 357 (851)
+++ ++..+++ .+|+|||+||.... .+.++..+++|+.|+.++++++...- .-.++|
T Consensus 63 ~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv 136 (257)
T PRK07067 63 RQD------SIDRIVAAAVERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKII 136 (257)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEE
Confidence 886 5555443 68999999997543 23566789999999999999996431 124799
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||...... ..+. ..|+.||+..|.+++.++. ++++
T Consensus 137 ~~sS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v 178 (257)
T PRK07067 137 NMASQAGRRG---------EALV-----------------------------SHYCATKAAVISYTQSAALALIRHGINV 178 (257)
T ss_pred EeCCHHhCCC---------CCCC-----------------------------chhhhhHHHHHHHHHHHHHHhcccCeEE
Confidence 9999532111 1122 3499999999888876532 8999
Q ss_pred EEEecccccCCCC
Q psy11859 433 VIVRPSIVLPSFQ 445 (851)
Q Consensus 433 ~ivRp~~V~G~~~ 445 (851)
.++|||.|+++..
T Consensus 179 ~~i~pg~v~t~~~ 191 (257)
T PRK07067 179 NAIAPGVVDTPMW 191 (257)
T ss_pred EEEeeCcccchhh
Confidence 9999999999753
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.8e-14 Score=152.94 Aligned_cols=159 Identities=21% Similarity=0.268 Sum_probs=116.9
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
.+++|+||||+|+||++++++|++.| .+|++++|.... +.+ +.. .+++++.+|++|
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G---~~Vi~~~r~~~~------~~~---------l~~------~~~~~~~~Dl~d 58 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDG---WRVFATCRKEED------VAA---------LEA------EGLEAFQLDYAE 58 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHH------HHH---------HHH------CCceEEEccCCC
Confidence 46799999999999999999999988 689999886432 111 111 157789999998
Q ss_pred CcCCCCHHHHHHHh--------cCccEEEEccccCCcc-------hhHHHHHHHHHHH----HHHHHHHHHhcCCceEEE
Q psy11859 297 ANLGIKDSDLLMLQ--------EEVSVVFNGAASLKLE-------AELKENVAANTRG----TQRLLDIALKMKKLVAFI 357 (851)
Q Consensus 297 ~~lgls~~~~~~~~--------~~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~G----t~~ll~~a~~~~~~~~fV 357 (851)
++ ++..++ ..+|+|||+||..... +.+...+++|+.| +..+++++++.+ ..++|
T Consensus 59 ~~------~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~-~g~iv 131 (277)
T PRK05993 59 PE------SIAALVAQVLELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG-QGRIV 131 (277)
T ss_pred HH------HHHHHHHHHHHHcCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC-CCEEE
Confidence 75 444333 2589999999865431 3456789999999 666777776654 67899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~ 432 (851)
++||.++... ..+. ..|+.||+..|.+++.++ . ++.+
T Consensus 132 ~isS~~~~~~---------~~~~-----------------------------~~Y~asK~a~~~~~~~l~~el~~~gi~v 173 (277)
T PRK05993 132 QCSSILGLVP---------MKYR-----------------------------GAYNASKFAIEGLSLTLRMELQGSGIHV 173 (277)
T ss_pred EECChhhcCC---------CCcc-----------------------------chHHHHHHHHHHHHHHHHHHhhhhCCEE
Confidence 9999755321 1112 349999999999987654 2 8999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
++++||.|-.+.
T Consensus 174 ~~v~Pg~v~T~~ 185 (277)
T PRK05993 174 SLIEPGPIETRF 185 (277)
T ss_pred EEEecCCccCch
Confidence 999999886653
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-14 Score=152.63 Aligned_cols=159 Identities=19% Similarity=0.234 Sum_probs=116.6
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++++|+||||||+||++++++|++.| .+|+++.|... +++++. ..++.++.+|+++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G---~~V~~~~r~~~------~l~~~~---------------~~~~~~~~~Dv~~ 57 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQG---YTVYGAARRVD------KMEDLA---------------SLGVHPLSLDVTD 57 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHHH---------------hCCCeEEEeeCCC
Confidence 57899999999999999999999988 68888888642 222211 0257889999998
Q ss_pred CcCCCCHHHHHHHhc-------CccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHH----HHHHhcCCceEEEE
Q psy11859 297 ANLGIKDSDLLMLQE-------EVSVVFNGAASLKLE-------AELKENVAANTRGTQRLL----DIALKMKKLVAFIH 358 (851)
Q Consensus 297 ~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll----~~a~~~~~~~~fV~ 358 (851)
++ ++..+++ ++|+|||+|+..... +.++..+++|+.|+..++ ..+++.+ ..++|+
T Consensus 58 ~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~g~iv~ 130 (273)
T PRK06182 58 EA------SIKAAVDTIIAEEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQR-SGRIIN 130 (273)
T ss_pred HH------HHHHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcC-CCEEEE
Confidence 76 6655554 789999999975432 346678999999965554 4554443 578999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ 433 (851)
+||..+... .|. ...|+.||+..+.++..++ . ++++.
T Consensus 131 isS~~~~~~----------~~~----------------------------~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~ 172 (273)
T PRK06182 131 ISSMGGKIY----------TPL----------------------------GAWYHATKFALEGFSDALRLEVAPFGIDVV 172 (273)
T ss_pred EcchhhcCC----------CCC----------------------------ccHhHHHHHHHHHHHHHHHHHhcccCCEEE
Confidence 999643211 111 1349999999999876543 2 89999
Q ss_pred EEecccccCCC
Q psy11859 434 IVRPSIVLPSF 444 (851)
Q Consensus 434 ivRp~~V~G~~ 444 (851)
++|||.|.++.
T Consensus 173 ~v~Pg~v~t~~ 183 (273)
T PRK06182 173 VIEPGGIKTEW 183 (273)
T ss_pred EEecCCccccc
Confidence 99999998764
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.5e-14 Score=149.47 Aligned_cols=163 Identities=20% Similarity=0.220 Sum_probs=116.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++|+||||+|+||++++++|++.| .+|+++.|.... +.++ .++ ...++.++.+|++
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g---~~v~~~~r~~~~------~~~~---------~~~---~~~~~~~~~~D~~ 62 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEG---ARVAITGRDPAS------LEAA---------RAE---LGESALVIRADAG 62 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEecCCHHH------HHHH---------HHH---hCCceEEEEecCC
Confidence 357899999999999999999999998 678888886321 1111 111 1236788999999
Q ss_pred CCcCCCCHHHHHHH-------hcCccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEee
Q psy11859 296 QANLGIKDSDLLML-------QEEVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKM-KKLVAFIHFS 360 (851)
Q Consensus 296 ~~~lgls~~~~~~~-------~~~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~vS 360 (851)
+.. +...+ ..++|+|||+||..... +.+...+++|+.|+.++++++... ....++|++|
T Consensus 63 ~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~ 136 (249)
T PRK06500 63 DVA------AQKALAQALAEAFGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNG 136 (249)
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 875 33332 23689999999975431 345678999999999999999752 1234677777
Q ss_pred eeee-eCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 361 TAFC-HPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 361 Ta~~-~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
|..+ ++. .+. +.|+.||+..|.+++.++. ++++.+
T Consensus 137 S~~~~~~~----------~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~ 177 (249)
T PRK06500 137 SINAHIGM----------PNS-----------------------------SVYAASKAALLSLAKTLSGELLPRGIRVNA 177 (249)
T ss_pred chHhccCC----------CCc-----------------------------cHHHHHHHHHHHHHHHHHHHhhhcCeEEEE
Confidence 6322 221 111 3499999999999966542 899999
Q ss_pred EecccccCCC
Q psy11859 435 VRPSIVLPSF 444 (851)
Q Consensus 435 vRp~~V~G~~ 444 (851)
+|||.+++|.
T Consensus 178 i~pg~~~t~~ 187 (249)
T PRK06500 178 VSPGPVQTPL 187 (249)
T ss_pred EeeCcCCCHH
Confidence 9999999873
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7e-14 Score=147.27 Aligned_cols=167 Identities=19% Similarity=0.248 Sum_probs=121.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++|+||||+|+||++|+++|++.| ..|++++|+... .+.+. +.+. ....++.++.+|++
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G---~~Vi~~~r~~~~---~~~~~--------~~~~----~~~~~~~~~~~D~~ 66 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEG---VNVGLLARTEEN---LKAVA--------EEVE----AYGVKVVIATADVS 66 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHH--------HHHH----HhCCeEEEEECCCC
Confidence 357899999999999999999999988 688999887432 11111 1111 11237889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
+++ ++..+++ ++|+|||+|+.... .+.+.+.+++|+.|+.++++++... .+..++|+
T Consensus 67 ~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~ 140 (239)
T PRK07666 67 DYE------EVTAAIEQLKNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIIN 140 (239)
T ss_pred CHH------HHHHHHHHHHHHcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 886 5555544 79999999986532 1345678999999999999988642 23578999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ 433 (851)
+||..+... ..+ .+.|+.||++.+.+++.++ + +++++
T Consensus 141 ~ss~~~~~~---------~~~-----------------------------~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~ 182 (239)
T PRK07666 141 ISSTAGQKG---------AAV-----------------------------TSAYSASKFGVLGLTESLMQEVRKHNIRVT 182 (239)
T ss_pred EcchhhccC---------CCC-----------------------------CcchHHHHHHHHHHHHHHHHHhhccCcEEE
Confidence 999654321 111 1349999999888886653 2 89999
Q ss_pred EEecccccCCC
Q psy11859 434 IVRPSIVLPSF 444 (851)
Q Consensus 434 ivRp~~V~G~~ 444 (851)
++|||.|.++.
T Consensus 183 ~v~pg~v~t~~ 193 (239)
T PRK07666 183 ALTPSTVATDM 193 (239)
T ss_pred EEecCcccCcc
Confidence 99999988764
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.1e-14 Score=151.11 Aligned_cols=166 Identities=17% Similarity=0.235 Sum_probs=119.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
..+++||||||+|+||++++++|++.| .+|+++.|... ++.++ .+.++. ...++.++.+|++
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G---~~V~~~~r~~~------~~~~~-----~~~~~~----~~~~~~~~~~Dl~ 69 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAG---FPVALGARRVE------KCEEL-----VDKIRA----DGGEAVAFPLDVT 69 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH-----HHHHHh----cCCeEEEEECCCC
Confidence 345799999999999999999999988 67888887532 11111 111111 1236788999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
+++ ++..+++ .+|+|||+||..... +.+...+++|+.|+.++++++... .+..+||+
T Consensus 70 ~~~------~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~ 143 (274)
T PRK07775 70 DPD------SVKSFVAQAEEALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIF 143 (274)
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEE
Confidence 886 5554443 679999999975421 345567899999999999887532 13467999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..++... .+. ..|+.||+..|.++..++. +++++
T Consensus 144 isS~~~~~~~---------~~~-----------------------------~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~ 185 (274)
T PRK07775 144 VGSDVALRQR---------PHM-----------------------------GAYGAAKAGLEAMVTNLQMELEGTGVRAS 185 (274)
T ss_pred ECChHhcCCC---------CCc-----------------------------chHHHHHHHHHHHHHHHHHHhcccCeEEE
Confidence 9997554321 112 2399999999999987652 89999
Q ss_pred EEecccccCC
Q psy11859 434 IVRPSIVLPS 443 (851)
Q Consensus 434 ivRp~~V~G~ 443 (851)
++|||.+.++
T Consensus 186 ~v~pG~~~t~ 195 (274)
T PRK07775 186 IVHPGPTLTG 195 (274)
T ss_pred EEeCCcccCc
Confidence 9999987554
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.2e-14 Score=149.43 Aligned_cols=166 Identities=19% Similarity=0.191 Sum_probs=122.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++|++||||||+|+||++++++|++.| .+|.++.|+.... +...+ ++. ...++.++.+|++
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G---~~v~~~~r~~~~~---~~~~~---------~~~----~~~~~~~~~~D~~ 65 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEG---AIPVIFGRSAPDD---EFAEE---------LRA----LQPRAEFVQVDLT 65 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcC---CcEEEEcCChhhH---HHHHH---------HHh----cCCceEEEEccCC
Confidence 578999999999999999999999998 6788888875432 11111 111 1236889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCC---cc---hhHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEee
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLK---LE---AELKENVAANTRGTQRLLDIALKM--KKLVAFIHFS 360 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~---~~---~~~~~~~~~Nv~Gt~~ll~~a~~~--~~~~~fV~vS 360 (851)
+++ ++..+++ .+|+|||+|+... ++ +.+...+++|+.|+.++++++... ....+||++|
T Consensus 66 ~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~s 139 (258)
T PRK08628 66 DDA------QCRDAVEQTVAKFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNIS 139 (258)
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEEC
Confidence 876 5554443 6899999999532 11 456678999999999999988642 1236799999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~iv 435 (851)
|..+... ..+. ..|+.||+..|.+++.++. ++.+..|
T Consensus 140 s~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v 181 (258)
T PRK08628 140 SKTALTG---------QGGT-----------------------------SGYAAAKGAQLALTREWAVALAKDGVRVNAV 181 (258)
T ss_pred CHHhccC---------CCCC-----------------------------chhHHHHHHHHHHHHHHHHHHhhcCeEEEEE
Confidence 9644311 1111 3499999999999987642 7999999
Q ss_pred ecccccCCC
Q psy11859 436 RPSIVLPSF 444 (851)
Q Consensus 436 Rp~~V~G~~ 444 (851)
|||.|+++.
T Consensus 182 ~pg~v~t~~ 190 (258)
T PRK08628 182 IPAEVMTPL 190 (258)
T ss_pred ecCccCCHH
Confidence 999999874
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.2e-14 Score=151.13 Aligned_cols=167 Identities=19% Similarity=0.238 Sum_probs=119.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++.+|.... +.++ .+.+.. ...++.++.+|++
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G---~~Vv~~~r~~~~------l~~~-----~~~l~~----~~~~~~~~~~Dv~ 65 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRG---ARVVLGDVDKPG------LRQA-----VNHLRA----EGFDVHGVMCDVR 65 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHH------HHHH-----HHHHHh----cCCeEEEEeCCCC
Confidence 578999999999999999999999998 678888876432 1111 111211 1236788999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh----cCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK----MKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~----~~~~~~fV 357 (851)
|++ ++..+++ .+|+|||+||.... .+.++..+++|+.|+.++++++.. .+.-.++|
T Consensus 66 d~~------~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv 139 (275)
T PRK05876 66 HRE------EVTHLADEAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVV 139 (275)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 986 5555443 57999999997532 134567789999999999998852 22235799
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHH----HHHHHHHHhC-CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRL----TETLVDEYKT-KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~----aE~~v~~~~~-~l~~ 432 (851)
++||..+... ..+. ..|+.||+. +|.+..++.. ++.+
T Consensus 140 ~isS~~~~~~---------~~~~-----------------------------~~Y~asK~a~~~~~~~l~~e~~~~gi~v 181 (275)
T PRK05876 140 FTASFAGLVP---------NAGL-----------------------------GAYGVAKYGVVGLAETLAREVTADGIGV 181 (275)
T ss_pred EeCChhhccC---------CCCC-----------------------------chHHHHHHHHHHHHHHHHHHhhhcCcEE
Confidence 9999655421 1122 349999996 6666666644 8999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
++++|+.|.++.
T Consensus 182 ~~v~Pg~v~t~~ 193 (275)
T PRK05876 182 SVLCPMVVETNL 193 (275)
T ss_pred EEEEeCcccccc
Confidence 999999987764
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.7e-14 Score=146.07 Aligned_cols=165 Identities=18% Similarity=0.178 Sum_probs=120.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++||||||||+||+.+++.|++.| .+|++++|..... .+.+.++ . ...++++.+|++
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G---~~v~~~~r~~~~~--~~~~~~~---------~------~~~~~~~~~D~~ 64 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARG---ARVALIGRGAAPL--SQTLPGV---------P------ADALRIGGIDLV 64 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCC---CeEEEEeCChHhH--HHHHHHH---------h------hcCceEEEeecC
Confidence 468999999999999999999999998 6799999965321 1111111 1 124677889999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
+.. ++..+++ ++|+|||+|+.... .+.+.+.+.+|+.|+.++++++... ..+++||+
T Consensus 65 ~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~ 138 (239)
T PRK12828 65 DPQ------AARRAVDEVNRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVN 138 (239)
T ss_pred CHH------HHHHHHHHHHHHhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEE
Confidence 875 5554443 68999999986532 2345577899999999999987531 24789999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..++... .+. ..|+.+|+..+.++..++. ++++.
T Consensus 139 ~sS~~~~~~~---------~~~-----------------------------~~y~~sk~a~~~~~~~~a~~~~~~~i~~~ 180 (239)
T PRK12828 139 IGAGAALKAG---------PGM-----------------------------GAYAAAKAGVARLTEALAAELLDRGITVN 180 (239)
T ss_pred ECchHhccCC---------CCc-----------------------------chhHHHHHHHHHHHHHHHHHhhhcCeEEE
Confidence 9997554321 112 2399999998888866542 89999
Q ss_pred EEecccccCCC
Q psy11859 434 IVRPSIVLPSF 444 (851)
Q Consensus 434 ivRp~~V~G~~ 444 (851)
++||+.|+++.
T Consensus 181 ~i~pg~v~~~~ 191 (239)
T PRK12828 181 AVLPSIIDTPP 191 (239)
T ss_pred EEecCcccCcc
Confidence 99999999884
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.3e-14 Score=149.06 Aligned_cols=166 Identities=18% Similarity=0.226 Sum_probs=121.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++||||||||+||++|+++|++.| .+|++++|+.... +.+ ...+.. ..++.++.+|++
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G---~~V~~~~r~~~~~---~~~--------~~~~~~-----~~~~~~~~~D~~ 63 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEG---ARVVVTDRNEEAA---ERV--------AAEILA-----GGRAIAVAADVS 63 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHH---HHH--------HHHHhc-----CCeEEEEECCCC
Confidence 467899999999999999999999998 6799999975321 111 111111 236889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKM---KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV 357 (851)
+++ ++..+++ .+|+|||+|+.... .+.+.+.+++|+.|+.++++.+... .+.++||
T Consensus 64 ~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv 137 (251)
T PRK07231 64 DEA------DVEAAVAAALERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIV 137 (251)
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 986 6655543 57999999997432 1345678999999988888877642 2468899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~ 432 (851)
++||..+.... .+. ..|+.||+..+.++..++ . ++++
T Consensus 138 ~~sS~~~~~~~---------~~~-----------------------------~~y~~sk~~~~~~~~~~a~~~~~~~i~v 179 (251)
T PRK07231 138 NVASTAGLRPR---------PGL-----------------------------GWYNASKGAVITLTKALAAELGPDKIRV 179 (251)
T ss_pred EEcChhhcCCC---------CCc-----------------------------hHHHHHHHHHHHHHHHHHHHhhhhCeEE
Confidence 99997654321 112 239999999888776654 2 8999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
++++||.|.++.
T Consensus 180 ~~i~pg~~~t~~ 191 (251)
T PRK07231 180 NAVAPVVVETGL 191 (251)
T ss_pred EEEEECccCCCc
Confidence 999999996653
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.5e-14 Score=148.95 Aligned_cols=167 Identities=17% Similarity=0.145 Sum_probs=118.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEE-EecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYI-LCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~-l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
+.+++|+||||||+||++++++|++.| .+|++ +.|.... .+.+. +.++. ...++.++.+|+
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g---~~v~~~~~r~~~~---~~~~~--------~~~~~----~~~~~~~~~~D~ 63 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEG---YDIAVNYARSRKA---AEETA--------EEIEA----LGRKALAVKANV 63 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEcCCCHHH---HHHHH--------HHHHh----cCCeEEEEEcCC
Confidence 357899999999999999999999998 45554 4554321 11111 11111 123688999999
Q ss_pred CCCcCCCCHHHHHHHhc-------CccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhcC---CceEEE
Q psy11859 295 LQANLGIKDSDLLMLQE-------EVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKMK---KLVAFI 357 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~~---~~~~fV 357 (851)
++++ ++..+++ .+|+|||+|+..... +.+...+++|+.|+.++++++...- +..+||
T Consensus 64 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv 137 (250)
T PRK08063 64 GDVE------KIKEMFAQIDEEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKII 137 (250)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEE
Confidence 9886 5555444 589999999864321 2344578899999999999987531 246999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+... ..+. ..|+.||+..|.+++.++. ++++
T Consensus 138 ~~sS~~~~~~---------~~~~-----------------------------~~y~~sK~a~~~~~~~~~~~~~~~~i~v 179 (250)
T PRK08063 138 SLSSLGSIRY---------LENY-----------------------------TTVGVSKAALEALTRYLAVELAPKGIAV 179 (250)
T ss_pred EEcchhhccC---------CCCc-----------------------------cHHHHHHHHHHHHHHHHHHHHhHhCeEE
Confidence 9999543211 1112 3499999999999977642 7999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
.+++|+.|..+.
T Consensus 180 ~~i~pg~v~t~~ 191 (250)
T PRK08063 180 NAVSGGAVDTDA 191 (250)
T ss_pred EeEecCcccCch
Confidence 999999998764
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.6e-14 Score=148.56 Aligned_cols=161 Identities=19% Similarity=0.158 Sum_probs=115.5
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+++||||||||+||+++++.|++.| ..|+++.|.... .+.+.+ .......++.++.+|++++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G---~~v~~~~r~~~~---~~~~~~------------~~~~~~~~~~~~~~D~~~~ 63 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKG---HNVIAGVQIAPQ---VTALRA------------EAARRGLALRVEKLDLTDA 63 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHH------------HHHhcCCcceEEEeeCCCH
Confidence 5789999999999999999999988 688888886422 111111 1111223688999999998
Q ss_pred cCCCCHHHHHHHhc-CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHH----HhcCCceEEEEeeeeeee
Q psy11859 298 NLGIKDSDLLMLQE-EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIA----LKMKKLVAFIHFSTAFCH 365 (851)
Q Consensus 298 ~lgls~~~~~~~~~-~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a----~~~~~~~~fV~vSTa~~~ 365 (851)
+ ++..++. ++|+|||+|+.... .+.++..+++|+.|+.++.+.+ .+.+ ..++|++||..+.
T Consensus 64 ~------~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~SS~~~~ 136 (257)
T PRK09291 64 I------DRAQAAEWDVDVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARG-KGKVVFTSSMAGL 136 (257)
T ss_pred H------HHHHHhcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEcChhhc
Confidence 6 6666665 89999999996532 1345677899999988776654 3443 5799999996432
Q ss_pred CCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh-----CCCCEEEEecccc
Q psy11859 366 PDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK-----TKLPVVIVRPSIV 440 (851)
Q Consensus 366 ~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~-----~~l~~~ivRp~~V 440 (851)
.. ... ...|+.||...|.++..+. .+++++++|||.+
T Consensus 137 ~~---------~~~-----------------------------~~~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~ 178 (257)
T PRK09291 137 IT---------GPF-----------------------------TGAYCASKHALEAIAEAMHAELKPFGIQVATVNPGPY 178 (257)
T ss_pred cC---------CCC-----------------------------cchhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcc
Confidence 11 011 1349999999999876543 2899999999876
Q ss_pred c
Q psy11859 441 L 441 (851)
Q Consensus 441 ~ 441 (851)
.
T Consensus 179 ~ 179 (257)
T PRK09291 179 L 179 (257)
T ss_pred c
Confidence 4
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.9e-14 Score=145.94 Aligned_cols=160 Identities=20% Similarity=0.263 Sum_probs=120.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+.+++|+||||||+||+++++.|++.|. .+|+++.|...... + ...++.++.+|++
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~--~~V~~~~r~~~~~~------~----------------~~~~~~~~~~D~~ 59 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGA--AKVYAAARDPESVT------D----------------LGPRVVPLQLDVT 59 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCc--ccEEEEecChhhhh------h----------------cCCceEEEEecCC
Confidence 4678999999999999999999999983 37888888753210 0 1237889999999
Q ss_pred CCcCCCCHHHHHHHhc---CccEEEEcccc-CCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEeee
Q psy11859 296 QANLGIKDSDLLMLQE---EVSVVFNGAAS-LKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHFST 361 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~---~vd~ViH~AA~-~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~vST 361 (851)
+++ ++..+++ .+|+|||+|+. ... .+.+...+++|+.|+.++++++... .+..+||++||
T Consensus 60 ~~~------~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS 133 (238)
T PRK08264 60 DPA------SVAAAAEAASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLS 133 (238)
T ss_pred CHH------HHHHHHHhcCCCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcC
Confidence 886 6665555 58999999997 221 2345677999999999999987632 13567999999
Q ss_pred eeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEe
Q psy11859 362 AFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVR 436 (851)
Q Consensus 362 a~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivR 436 (851)
..+.... .+ .+.|+.||+.+|.++..++. +++++++|
T Consensus 134 ~~~~~~~---------~~-----------------------------~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~ 175 (238)
T PRK08264 134 VLSWVNF---------PN-----------------------------LGTYSASKAAAWSLTQALRAELAPQGTRVLGVH 175 (238)
T ss_pred hhhccCC---------CC-----------------------------chHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEe
Confidence 6553211 11 13499999999998876542 89999999
Q ss_pred cccccCC
Q psy11859 437 PSIVLPS 443 (851)
Q Consensus 437 p~~V~G~ 443 (851)
|+.|.++
T Consensus 176 pg~v~t~ 182 (238)
T PRK08264 176 PGPIDTD 182 (238)
T ss_pred CCccccc
Confidence 9988665
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.9e-14 Score=153.76 Aligned_cols=186 Identities=16% Similarity=0.174 Sum_probs=120.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|+++.|..... .+.. +.+....+ ..++.++.+|++
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G---~~vi~~~r~~~~~--~~~~---------~~l~~~~~--~~~~~~~~~Dl~ 77 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKG---AHVVLAVRNLDKG--KAAA---------ARITAATP--GADVTLQELDLT 77 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCC---CEEEEEeCCHHHH--HHHH---------HHHHHhCC--CCceEEEECCCC
Confidence 478999999999999999999999998 6788888864221 1111 11221111 136889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCcc-----hhHHHHHHHHHHH----HHHHHHHHHhcCCceEEEEe
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKLE-----AELKENVAANTRG----TQRLLDIALKMKKLVAFIHF 359 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~-----~~~~~~~~~Nv~G----t~~ll~~a~~~~~~~~fV~v 359 (851)
+.+ ++..+++ ++|+|||+||..... +.+...+++|+.| |..+++++++.+ ..++|++
T Consensus 78 d~~------~v~~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~v 150 (306)
T PRK06197 78 SLA------SVRAAADALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP-GSRVVTV 150 (306)
T ss_pred CHH------HHHHHHHHHHhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC-CCEEEEE
Confidence 876 5554432 589999999975332 3456678999999 666676666553 5799999
Q ss_pred eeeeeeCC-CcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 360 STAFCHPD-QKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 360 STa~~~~~-~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
||..+... ....++.....+..+ ...|+.||+..+.+...++. ++++.
T Consensus 151 SS~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~ 204 (306)
T PRK06197 151 SSGGHRIRAAIHFDDLQWERRYNR--------------------------VAAYGQSKLANLLFTYELQRRLAAAGATTI 204 (306)
T ss_pred CCHHHhccCCCCccccCcccCCCc--------------------------HHHHHHHHHHHHHHHHHHHHHhhcCCCCeE
Confidence 99753321 111111111111111 24599999999998877643 55554
Q ss_pred E--EecccccCCCCCCchh
Q psy11859 434 I--VRPSIVLPSFQEPVPG 450 (851)
Q Consensus 434 i--vRp~~V~G~~~~p~p~ 450 (851)
+ +.||.|..+....+|.
T Consensus 205 ~v~~~PG~v~T~~~~~~~~ 223 (306)
T PRK06197 205 AVAAHPGVSNTELARNLPR 223 (306)
T ss_pred EEEeCCCcccCcccccCcH
Confidence 4 5799987665444443
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.4e-14 Score=148.47 Aligned_cols=163 Identities=17% Similarity=0.233 Sum_probs=117.3
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+|+||||||+|+||+.+++.|++.| .+|++++|... ++.++ .++.+.. .++.++.+|++++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G---~~v~~~~r~~~------~~~~~---------~~~~~~~-~~~~~~~~Dl~~~ 62 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQG---ATLGLVARRTD------ALQAF---------AARLPKA-ARVSVYAADVRDA 62 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH---------HHhcccC-CeeEEEEcCCCCH
Confidence 4799999999999999999999998 57888888632 22211 1111111 1788999999987
Q ss_pred cCCCCHHHHHHHhc-------CccEEEEccccCCc----c----hhHHHHHHHHHHHHHHHHHHH----HhcCCceEEEE
Q psy11859 298 NLGIKDSDLLMLQE-------EVSVVFNGAASLKL----E----AELKENVAANTRGTQRLLDIA----LKMKKLVAFIH 358 (851)
Q Consensus 298 ~lgls~~~~~~~~~-------~vd~ViH~AA~~~~----~----~~~~~~~~~Nv~Gt~~ll~~a----~~~~~~~~fV~ 358 (851)
+ ++..+++ .+|+|||+||.... . +.+...+++|+.|+.+++++. ++.+ ..++|+
T Consensus 63 ~------~i~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~-~~~iv~ 135 (257)
T PRK07024 63 D------ALAAAAADFIAAHGLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAAR-RGTLVG 135 (257)
T ss_pred H------HHHHHHHHHHHhCCCCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcC-CCEEEE
Confidence 6 5544433 48999999996432 1 346678999999999988743 3333 578999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ 433 (851)
+||..+... .|. ...|+.||+..|.++..++ . +++++
T Consensus 136 isS~~~~~~----------~~~----------------------------~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~ 177 (257)
T PRK07024 136 IASVAGVRG----------LPG----------------------------AGAYSASKAAAIKYLESLRVELRPAGVRVV 177 (257)
T ss_pred EechhhcCC----------CCC----------------------------CcchHHHHHHHHHHHHHHHHHhhccCcEEE
Confidence 998654311 111 1249999999999987653 2 89999
Q ss_pred EEecccccCCC
Q psy11859 434 IVRPSIVLPSF 444 (851)
Q Consensus 434 ivRp~~V~G~~ 444 (851)
++|||.|.++.
T Consensus 178 ~v~Pg~v~t~~ 188 (257)
T PRK07024 178 TIAPGYIRTPM 188 (257)
T ss_pred EEecCCCcCch
Confidence 99999998763
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-13 Score=148.56 Aligned_cols=170 Identities=16% Similarity=0.165 Sum_probs=123.4
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
..+++|+||||||+|+||.++++.|++.| .+|+++.|.... ..+.+.+. +. ....++.++.+|
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G---~~V~l~~r~~~~--~~~~~~~~--------~~----~~~~~~~~~~~D 104 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEG---ADIAIVYLDEHE--DANETKQR--------VE----KEGVKCLLIPGD 104 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCcch--HHHHHHHH--------HH----hcCCeEEEEEcc
Confidence 34678999999999999999999999998 678888886432 11111111 11 112368899999
Q ss_pred CCCCcCCCCHHHHHHHhc-------CccEEEEccccCCcc--------hhHHHHHHHHHHHHHHHHHHHHhc-CCceEEE
Q psy11859 294 ILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKLE--------AELKENVAANTRGTQRLLDIALKM-KKLVAFI 357 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~--------~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV 357 (851)
+++.+ .+..+++ ++|+|||+|+..... +.+...+++|+.|+.++++++... ....++|
T Consensus 105 l~~~~------~~~~~~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV 178 (290)
T PRK06701 105 VSDEA------FCKDAVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAII 178 (290)
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEE
Confidence 99876 4544432 689999999964321 345678999999999999999763 2235899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..++... +. ...|+.||+..+.+++.++. ++++
T Consensus 179 ~isS~~~~~~~----------~~----------------------------~~~Y~~sK~a~~~l~~~la~~~~~~gIrv 220 (290)
T PRK06701 179 NTGSITGYEGN----------ET----------------------------LIDYSATKGAIHAFTRSLAQSLVQKGIRV 220 (290)
T ss_pred EEecccccCCC----------CC----------------------------cchhHHHHHHHHHHHHHHHHHhhhcCeEE
Confidence 99997654321 11 12399999999998877653 8999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
+.++||.|..+.
T Consensus 221 ~~i~pG~v~T~~ 232 (290)
T PRK06701 221 NAVAPGPIWTPL 232 (290)
T ss_pred EEEecCCCCCcc
Confidence 999999998874
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-13 Score=147.04 Aligned_cols=166 Identities=17% Similarity=0.210 Sum_probs=120.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++||||||+|+||.++++.|++.| .+|++++|.... .+.+. ..++. ...++.++.+|++
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G---~~Vi~~~r~~~~---~~~~~--------~~l~~----~~~~~~~~~~D~~ 69 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAG---ADVLIAARTESQ---LDEVA--------EQIRA----AGRRAHVVAADLA 69 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHH--------HHHHh----cCCcEEEEEccCC
Confidence 568999999999999999999999988 689999986422 11111 11111 1246889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc----CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM----KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~~~~~fV 357 (851)
+++ ++..+++ ++|+|||+|+.... .+.+...+.+|+.|+.++++++... ....+||
T Consensus 70 ~~~------~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv 143 (263)
T PRK07814 70 HPE------ATAGLAGQAVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVI 143 (263)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 876 5544433 68999999986432 1346678999999999999999641 2357899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----CCCEE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----KLPVV 433 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----~l~~~ 433 (851)
++||.++... ..+. +.|+.||+..|.+++.++. ++.+.
T Consensus 144 ~~sS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~~~~e~~~~i~v~ 185 (263)
T PRK07814 144 NISSTMGRLA---------GRGF-----------------------------AAYGTAKAALAHYTRLAALDLCPRIRVN 185 (263)
T ss_pred EEccccccCC---------CCCC-----------------------------chhHHHHHHHHHHHHHHHHHHCCCceEE
Confidence 9999644221 1222 3499999999998887654 67888
Q ss_pred EEecccccCC
Q psy11859 434 IVRPSIVLPS 443 (851)
Q Consensus 434 ivRp~~V~G~ 443 (851)
.++||.|..+
T Consensus 186 ~i~Pg~v~t~ 195 (263)
T PRK07814 186 AIAPGSILTS 195 (263)
T ss_pred EEEeCCCcCc
Confidence 9999988654
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.6e-14 Score=147.08 Aligned_cols=164 Identities=19% Similarity=0.250 Sum_probs=117.5
Q ss_pred EEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcCC
Q psy11859 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLG 300 (851)
Q Consensus 221 VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lg 300 (851)
||||||+|+||+++++.|+++| .+|++++|..... .+.+. +.+. ....++.++.+|+++++
T Consensus 1 vlItG~~g~iG~~la~~l~~~G---~~v~~~~r~~~~~--~~~~~--------~~~~----~~~~~~~~~~~D~~~~~-- 61 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEG---AKVIITYRSSEEG--AEEVV--------EELK----AYGVKALGVVCDVSDRE-- 61 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCchhH--HHHHH--------HHHH----hcCCceEEEEecCCCHH--
Confidence 6899999999999999999998 6788988865221 11111 1111 11235889999999886
Q ss_pred CCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEeeeee
Q psy11859 301 IKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHFSTAF 363 (851)
Q Consensus 301 ls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~vSTa~ 363 (851)
++..+++ .+|+|||+|+.... .+.+...+++|+.|+.++++++... ....+||++||..
T Consensus 62 ----~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~ 137 (239)
T TIGR01830 62 ----DVKAVVEEIEEELGPIDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVV 137 (239)
T ss_pred ----HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCcc
Confidence 5555443 47999999997642 1345678999999999999998753 2356999999964
Q ss_pred ee-CCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEec
Q psy11859 364 CH-PDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVRP 437 (851)
Q Consensus 364 ~~-~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivRp 437 (851)
+. +. .+. ..|+.+|+..|.++..++. ++++.++||
T Consensus 138 ~~~g~----------~~~-----------------------------~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~p 178 (239)
T TIGR01830 138 GLMGN----------AGQ-----------------------------ANYAASKAGVIGFTKSLAKELASRNITVNAVAP 178 (239)
T ss_pred ccCCC----------CCC-----------------------------chhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEE
Confidence 32 21 111 3499999988887766532 899999999
Q ss_pred ccccCCCCC
Q psy11859 438 SIVLPSFQE 446 (851)
Q Consensus 438 ~~V~G~~~~ 446 (851)
+.+.++...
T Consensus 179 g~~~~~~~~ 187 (239)
T TIGR01830 179 GFIDTDMTD 187 (239)
T ss_pred CCCCChhhh
Confidence 998776433
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-13 Score=144.50 Aligned_cols=166 Identities=19% Similarity=0.188 Sum_probs=119.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++|+||||||+||+++++.|++.| .+|++++|.... .+++. +.+.. . .++.++.+|+.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g---~~V~~~~r~~~~---~~~~~--------~~l~~----~-~~~~~~~~D~~ 64 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEG---YKVAITARDQKE---LEEAA--------AELNN----K-GNVLGLAADVR 64 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCC---CEEEEeeCCHHH---HHHHH--------HHHhc----c-CcEEEEEccCC
Confidence 357899999999999999999999987 679999886421 11111 11111 1 47889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEe
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM--KKLVAFIHF 359 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~--~~~~~fV~v 359 (851)
+++ ++..+++ .+|+|||+|+.... .+.+.+.+++|+.|+.++++++... .+..++|++
T Consensus 65 ~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ 138 (237)
T PRK07326 65 DEA------DVQRAVDAIVAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINI 138 (237)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEE
Confidence 876 5544443 78999999987543 1335577999999999999988643 135689999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~i 434 (851)
||..+... ..+. ..|+.||+..+.+++.+. . ++++++
T Consensus 139 ss~~~~~~---------~~~~-----------------------------~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~ 180 (237)
T PRK07326 139 SSLAGTNF---------FAGG-----------------------------AAYNASKFGLVGFSEAAMLDLRQYGIKVST 180 (237)
T ss_pred CChhhccC---------CCCC-----------------------------chHHHHHHHHHHHHHHHHHHhcccCcEEEE
Confidence 99654321 1111 239999998888877653 2 899999
Q ss_pred EecccccCCC
Q psy11859 435 VRPSIVLPSF 444 (851)
Q Consensus 435 vRp~~V~G~~ 444 (851)
+||+.+..+.
T Consensus 181 v~pg~~~t~~ 190 (237)
T PRK07326 181 IMPGSVATHF 190 (237)
T ss_pred EeeccccCcc
Confidence 9999886653
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-13 Score=145.60 Aligned_cols=165 Identities=18% Similarity=0.178 Sum_probs=116.9
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+|+||||||+|+||+++++.|++.| .+|++++|.... .+++.. .+. ....++.++.+|++++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G---~~v~~~~r~~~~---~~~~~~--------~~~----~~~~~~~~~~~Dl~~~ 63 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDG---FKVAIVDYNEET---AQAAAD--------KLS----KDGGKAIAVKADVSDR 63 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHH--------HHH----hcCCeEEEEECCCCCH
Confidence 6899999999999999999999998 688888886432 111111 111 1123678899999998
Q ss_pred cCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc----CCceEEEEe
Q psy11859 298 NLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM----KKLVAFIHF 359 (851)
Q Consensus 298 ~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~~~~~fV~v 359 (851)
+ ++..+++ ++|+|||+|+.... .+.++..+++|+.|+..+++++... +.-.++|++
T Consensus 64 ~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~ 137 (256)
T PRK08643 64 D------QVFAAVRQVVDTFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINA 137 (256)
T ss_pred H------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 6 4444433 68999999986432 2345678999999999888777542 212478999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..+... .... ..|+.||+..|.+++.++. ++.+++
T Consensus 138 sS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~ 179 (256)
T PRK08643 138 TSQAGVVG---------NPEL-----------------------------AVYSSTKFAVRGLTQTAARDLASEGITVNA 179 (256)
T ss_pred CccccccC---------CCCC-----------------------------chhHHHHHHHHHHHHHHHHHhcccCcEEEE
Confidence 98543211 0111 3499999998887776542 899999
Q ss_pred EecccccCCC
Q psy11859 435 VRPSIVLPSF 444 (851)
Q Consensus 435 vRp~~V~G~~ 444 (851)
++||.|..+.
T Consensus 180 i~Pg~v~t~~ 189 (256)
T PRK08643 180 YAPGIVKTPM 189 (256)
T ss_pred EeeCCCcChh
Confidence 9999998763
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=146.32 Aligned_cols=160 Identities=19% Similarity=0.204 Sum_probs=115.6
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|+||||||+||++++++|++.| .+|+++.|.... +.++ ... ...++.++.+|+++++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G---~~V~~~~r~~~~------~~~~---------~~~---~~~~~~~~~~Dl~~~~ 59 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG---HKVIATGRRQER------LQEL---------KDE---LGDNLYIAQLDVRNRA 59 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC---CEEEEEECCHHH------HHHH---------HHH---hccceEEEEecCCCHH
Confidence 589999999999999999999998 678888886432 1111 110 1136889999999876
Q ss_pred CCCCHHHHHHHh-------cCccEEEEccccCC----c----chhHHHHHHHHHHHHHHHHHHHH----hcCCceEEEEe
Q psy11859 299 LGIKDSDLLMLQ-------EEVSVVFNGAASLK----L----EAELKENVAANTRGTQRLLDIAL----KMKKLVAFIHF 359 (851)
Q Consensus 299 lgls~~~~~~~~-------~~vd~ViH~AA~~~----~----~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV~v 359 (851)
++..++ .++|+|||+||... + .+.+++.+++|+.|+..+++++. +. +..++|++
T Consensus 60 ------~i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~i 132 (248)
T PRK10538 60 ------AIEEMLASLPAEWRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVER-NHGHIINI 132 (248)
T ss_pred ------HHHHHHHHHHHHcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEE
Confidence 554443 36999999998632 1 23556789999999777766654 33 36789999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..+... ..+. +.|+.||...|.+....+. ++.+.+
T Consensus 133 sS~~~~~~---------~~~~-----------------------------~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~ 174 (248)
T PRK10538 133 GSTAGSWP---------YAGG-----------------------------NVYGATKAFVRQFSLNLRTDLHGTAVRVTD 174 (248)
T ss_pred CCcccCCC---------CCCC-----------------------------chhHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 99644210 1112 3499999999999877643 789999
Q ss_pred EecccccCCC
Q psy11859 435 VRPSIVLPSF 444 (851)
Q Consensus 435 vRp~~V~G~~ 444 (851)
++||.|.|+.
T Consensus 175 v~pg~i~~~~ 184 (248)
T PRK10538 175 IEPGLVGGTE 184 (248)
T ss_pred EeCCeecccc
Confidence 9999998763
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.4e-14 Score=146.66 Aligned_cols=163 Identities=18% Similarity=0.213 Sum_probs=120.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++|+||||+|+||+++++.|++.| .+|+++.|.... ..++ .+. .+..++.+|++
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g---~~V~~~~r~~~~------~~~~---------~~~-----~~~~~~~~D~~ 63 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRG---ARVVAAARNAAA------LDRL---------AGE-----TGCEPLRLDVG 63 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCC---CEEEEEeCCHHH------HHHH---------HHH-----hCCeEEEecCC
Confidence 578999999999999999999999988 578898886421 1111 110 13567889999
Q ss_pred CCcCCCCHHHHHHHhc---CccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhcC----CceEEEEeee
Q psy11859 296 QANLGIKDSDLLMLQE---EVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKMK----KLVAFIHFST 361 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~---~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~~----~~~~fV~vST 361 (851)
++. ++..+++ .+|+|||+|+..... +.+.+.+.+|+.|+.++++++.+.. ...+||++||
T Consensus 64 ~~~------~v~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS 137 (245)
T PRK07060 64 DDA------AIRAALAAAGAFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSS 137 (245)
T ss_pred CHH------HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEcc
Confidence 875 5555554 589999999975432 3456778899999999999887531 1368999999
Q ss_pred eeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEe
Q psy11859 362 AFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVR 436 (851)
Q Consensus 362 a~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivR 436 (851)
..++... .+. ..|+.||..+|.+++.++. +++++.+|
T Consensus 138 ~~~~~~~---------~~~-----------------------------~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~ 179 (245)
T PRK07060 138 QAALVGL---------PDH-----------------------------LAYCASKAALDAITRVLCVELGPHGIRVNSVN 179 (245)
T ss_pred HHHcCCC---------CCC-----------------------------cHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEe
Confidence 6543221 111 3499999999998877643 79999999
Q ss_pred cccccCCCC
Q psy11859 437 PSIVLPSFQ 445 (851)
Q Consensus 437 p~~V~G~~~ 445 (851)
|+.|.++..
T Consensus 180 pg~v~~~~~ 188 (245)
T PRK07060 180 PTVTLTPMA 188 (245)
T ss_pred eCCCCCchh
Confidence 999998753
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=146.66 Aligned_cols=168 Identities=16% Similarity=0.193 Sum_probs=121.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++||||||+|+||++++++|++.| .+|+++.|... +++++. ..++. ...++.++.+|++
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G---~~Vi~~~r~~~------~~~~~~-----~~l~~----~~~~~~~~~~D~~ 68 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAG---AKVVLASRRVE------RLKELR-----AEIEA----EGGAAHVVSLDVT 68 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHHH-----HHHHh----cCCcEEEEEecCC
Confidence 578999999999999999999999987 67999988642 222111 11111 1236889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc----C------
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM----K------ 351 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~------ 351 (851)
+++ ++..+++ .+|+|||+|+.... .+.++..+++|+.|+.++++++... .
T Consensus 69 ~~~------~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (258)
T PRK06949 69 DYQ------SIKAAVAHAETEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNT 142 (258)
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCC
Confidence 875 5555543 58999999996432 1346678999999999999887531 0
Q ss_pred -CceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--
Q psy11859 352 -KLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-- 428 (851)
Q Consensus 352 -~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-- 428 (851)
.-.++|++||..+... ..+ .+.|+.||+..|.++..++.
T Consensus 143 ~~~g~iv~~sS~~~~~~---------~~~-----------------------------~~~Y~~sK~a~~~~~~~la~~~ 184 (258)
T PRK06949 143 KPGGRIINIASVAGLRV---------LPQ-----------------------------IGLYCMSKAAVVHMTRAMALEW 184 (258)
T ss_pred CCCeEEEEECcccccCC---------CCC-----------------------------ccHHHHHHHHHHHHHHHHHHHH
Confidence 0258999999654321 111 23499999999998877643
Q ss_pred ---CCCEEEEecccccCCCC
Q psy11859 429 ---KLPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 429 ---~l~~~ivRp~~V~G~~~ 445 (851)
++++++++||.|.++..
T Consensus 185 ~~~~i~v~~v~pG~v~t~~~ 204 (258)
T PRK06949 185 GRHGINVNAICPGYIDTEIN 204 (258)
T ss_pred HhcCeEEEEEeeCCCcCCcc
Confidence 79999999999998753
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-13 Score=145.93 Aligned_cols=160 Identities=19% Similarity=0.233 Sum_probs=118.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||++++++|++.| .+|+++.|..... ...++.++.+|++
T Consensus 7 ~~~k~vlItGas~gIG~~ia~~l~~~G---~~v~~~~r~~~~~------------------------~~~~~~~~~~D~~ 59 (260)
T PRK06523 7 LAGKRALVTGGTKGIGAATVARLLEAG---ARVVTTARSRPDD------------------------LPEGVEFVAADLT 59 (260)
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHCC---CEEEEEeCChhhh------------------------cCCceeEEecCCC
Confidence 578999999999999999999999998 6899998864320 1136788999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc---------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL---------EAELKENVAANTRGTQRLLDIALKM---KKLVAF 356 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~---------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~f 356 (851)
+++ ++..++ .++|+|||+|+.... .+.+...+++|+.|+.++++++... ....++
T Consensus 60 ~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~i 133 (260)
T PRK06523 60 TAE------GCAAVARAVLERLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVI 133 (260)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEE
Confidence 876 444332 368999999985321 2356678999999998887766431 124689
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~ 431 (851)
|++||..+.... +.+. ..|+.||+..|.+++.++. ++.
T Consensus 134 i~isS~~~~~~~--------~~~~-----------------------------~~Y~~sK~a~~~l~~~~a~~~~~~gi~ 176 (260)
T PRK06523 134 IHVTSIQRRLPL--------PEST-----------------------------TAYAAAKAALSTYSKSLSKEVAPKGVR 176 (260)
T ss_pred EEEecccccCCC--------CCCc-----------------------------chhHHHHHHHHHHHHHHHHHHhhcCcE
Confidence 999996543210 1112 3499999999988877652 899
Q ss_pred EEEEecccccCCCC
Q psy11859 432 VVIVRPSIVLPSFQ 445 (851)
Q Consensus 432 ~~ivRp~~V~G~~~ 445 (851)
+.+++||.|..+..
T Consensus 177 v~~i~Pg~v~t~~~ 190 (260)
T PRK06523 177 VNTVSPGWIETEAA 190 (260)
T ss_pred EEEEecCcccCccH
Confidence 99999999988753
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-13 Score=145.72 Aligned_cols=165 Identities=18% Similarity=0.236 Sum_probs=118.6
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+++||||||+|+||++++++|++.| .+|.+++|.... .+.+ .+.+.. ...++.++.+|++++
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g---~~Vi~~~r~~~~---~~~~--------~~~l~~----~~~~~~~~~~Dl~~~ 62 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAG---AQLVLAARNETR---LASL--------AQELAD----HGGEALVVPTDVSDA 62 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHH--------HHHHHh----cCCcEEEEEccCCCH
Confidence 4789999999999999999999988 678888886422 1111 111111 123688999999987
Q ss_pred cCCCCHHHHHHHhc-------CccEEEEccccCCcc--------hhHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEee
Q psy11859 298 NLGIKDSDLLMLQE-------EVSVVFNGAASLKLE--------AELKENVAANTRGTQRLLDIALKM--KKLVAFIHFS 360 (851)
Q Consensus 298 ~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~--------~~~~~~~~~Nv~Gt~~ll~~a~~~--~~~~~fV~vS 360 (851)
+ .+..+++ ++|+|||+|+..... +.+.+.+++|+.|+.++++.+... .+..++|++|
T Consensus 63 ~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~s 136 (263)
T PRK06181 63 E------ACERLIEAAVARFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVS 136 (263)
T ss_pred H------HHHHHHHHHHHHcCCCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 6 5555443 689999999975432 224567999999999999998532 1246899999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~iv 435 (851)
|..++.. ..+. ..|+.||+..|.+++.++. ++++.++
T Consensus 137 S~~~~~~---------~~~~-----------------------------~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i 178 (263)
T PRK06181 137 SLAGLTG---------VPTR-----------------------------SGYAASKHALHGFFDSLRIELADDGVAVTVV 178 (263)
T ss_pred cccccCC---------CCCc-----------------------------cHHHHHHHHHHHHHHHHHHHhhhcCceEEEE
Confidence 9655421 1112 3399999999998876532 8999999
Q ss_pred ecccccCCC
Q psy11859 436 RPSIVLPSF 444 (851)
Q Consensus 436 Rp~~V~G~~ 444 (851)
+||.|..+.
T Consensus 179 ~pg~v~t~~ 187 (263)
T PRK06181 179 CPGFVATDI 187 (263)
T ss_pred ecCccccCc
Confidence 999887653
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-13 Score=145.20 Aligned_cols=165 Identities=16% Similarity=0.185 Sum_probs=121.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||++++++|++.| .+|+++.|... ..+.+ .+.+ ...++.++.+|++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G---~~vi~~~r~~~-----~~~~~--------~~~~----~~~~~~~~~~D~~ 62 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAG---ADIVGAGRSEP-----SETQQ--------QVEA----LGRRFLSLTADLS 62 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCchH-----HHHHH--------HHHh----cCCceEEEECCCC
Confidence 578999999999999999999999998 68888888542 11111 1111 1236889999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc----CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM----KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~~~~~fV 357 (851)
+++ ++..++ .++|+|||+|+.... .+.+.+.+++|+.|+.++++++... +.-.++|
T Consensus 63 ~~~------~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv 136 (248)
T TIGR01832 63 DIE------AIKALVDSAVEEFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKII 136 (248)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 886 554333 368999999997542 1356678999999999999988642 1146899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..++.+. +. ...|+.||+..+.+++.++. ++.+
T Consensus 137 ~~sS~~~~~~~----------~~----------------------------~~~Y~~sKaa~~~~~~~la~e~~~~gi~v 178 (248)
T TIGR01832 137 NIASMLSFQGG----------IR----------------------------VPSYTASKHGVAGLTKLLANEWAAKGINV 178 (248)
T ss_pred EEecHHhccCC----------CC----------------------------CchhHHHHHHHHHHHHHHHHHhCccCcEE
Confidence 99997554321 11 12399999999998877643 7999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
.+++||.|..+.
T Consensus 179 ~~v~pg~v~t~~ 190 (248)
T TIGR01832 179 NAIAPGYMATNN 190 (248)
T ss_pred EEEEECcCcCcc
Confidence 999999998764
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-13 Score=144.82 Aligned_cols=158 Identities=17% Similarity=0.229 Sum_probs=120.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+.+|+||||||+|+||+.++++|++.| .+|++++|.. +. ....++.++++|++
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G---~~v~~~~~~~--------~~----------------~~~~~~~~~~~D~~ 58 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAG---AKVIGFDQAF--------LT----------------QEDYPFATFVLDVS 58 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEecch--------hh----------------hcCCceEEEEecCC
Confidence 567999999999999999999999998 6888888864 00 01236888999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
+++ ++..+++ .+|+|||+|+.... .+.+...+++|+.|+..+++++... ....++|+
T Consensus 59 ~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~ 132 (252)
T PRK08220 59 DAA------AVAQVCQRLLAETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVT 132 (252)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 876 5655544 48999999997643 1356678999999999999998532 12457999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... ..+. ..|+.||+..|.+++.++. ++++.
T Consensus 133 ~ss~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~~i~v~ 174 (252)
T PRK08220 133 VGSNAAHVP---------RIGM-----------------------------AAYGASKAALTSLAKCVGLELAPYGVRCN 174 (252)
T ss_pred ECCchhccC---------CCCC-----------------------------chhHHHHHHHHHHHHHHHHHhhHhCeEEE
Confidence 999643211 1112 3499999999999876653 89999
Q ss_pred EEecccccCCC
Q psy11859 434 IVRPSIVLPSF 444 (851)
Q Consensus 434 ivRp~~V~G~~ 444 (851)
+++||.|.++.
T Consensus 175 ~i~pg~v~t~~ 185 (252)
T PRK08220 175 VVSPGSTDTDM 185 (252)
T ss_pred EEecCcCcchh
Confidence 99999999875
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.7e-13 Score=144.78 Aligned_cols=155 Identities=14% Similarity=0.207 Sum_probs=118.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|.||+++++.|++.| .+|+++.|..... .++.++.+|++
T Consensus 4 l~gk~vlItGas~gIG~~ia~~l~~~G---~~Vi~~~r~~~~~--------------------------~~~~~~~~D~~ 54 (258)
T PRK06398 4 LKDKVAIVTGGSQGIGKAVVNRLKEEG---SNVINFDIKEPSY--------------------------NDVDYFKVDVS 54 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CeEEEEeCCcccc--------------------------CceEEEEccCC
Confidence 468999999999999999999999998 6888888875331 15788999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
+++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+..+++++... .+..++|+
T Consensus 55 ~~~------~i~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~ 128 (258)
T PRK06398 55 NKE------QVIKGIDYVISKYGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIIN 128 (258)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 986 5544433 68999999997432 2346677999999999999888642 23578999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----CCCEEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----KLPVVI 434 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----~l~~~i 434 (851)
+||..+... ..+. ..|+.||+..|.+++.++. ++.+.+
T Consensus 129 isS~~~~~~---------~~~~-----------------------------~~Y~~sKaal~~~~~~la~e~~~~i~vn~ 170 (258)
T PRK06398 129 IASVQSFAV---------TRNA-----------------------------AAYVTSKHAVLGLTRSIAVDYAPTIRCVA 170 (258)
T ss_pred eCcchhccC---------CCCC-----------------------------chhhhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence 999644321 1112 3499999999999887643 588999
Q ss_pred EecccccCC
Q psy11859 435 VRPSIVLPS 443 (851)
Q Consensus 435 vRp~~V~G~ 443 (851)
++||.|-.+
T Consensus 171 i~PG~v~T~ 179 (258)
T PRK06398 171 VCPGSIRTP 179 (258)
T ss_pred EecCCccch
Confidence 999988655
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-13 Score=147.49 Aligned_cols=166 Identities=17% Similarity=0.203 Sum_probs=120.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||+++++.|++.| .+|++++|.... .+.+. +.+ . ...++.++.+|++
T Consensus 16 l~~k~~lItGas~gIG~~la~~l~~~G---~~v~~~~~~~~~---~~~~~--------~~~----~-~~~~~~~~~~Dl~ 76 (280)
T PLN02253 16 LLGKVALVTGGATGIGESIVRLFHKHG---AKVCIVDLQDDL---GQNVC--------DSL----G-GEPNVCFFHCDVT 76 (280)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcC---CEEEEEeCCHHH---HHHHH--------HHh----c-CCCceEEEEeecC
Confidence 578999999999999999999999998 688888875321 11111 111 1 1247889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc---------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL---------EAELKENVAANTRGTQRLLDIALKM---KKLVAF 356 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~---------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~f 356 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... ..-.++
T Consensus 77 d~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~i 150 (280)
T PLN02253 77 VED------DVSRAVDFTVDKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSI 150 (280)
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceE
Confidence 986 5555544 68999999997532 1356788999999999999988642 123478
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~ 431 (851)
|++||..+.- ..|. +..|+.||+..|.+++.++. ++.
T Consensus 151 i~isS~~~~~----------~~~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 192 (280)
T PLN02253 151 VSLCSVASAI----------GGLG----------------------------PHAYTGSKHAVLGLTRSVAAELGKHGIR 192 (280)
T ss_pred EEecChhhcc----------cCCC----------------------------CcccHHHHHHHHHHHHHHHHHhhhcCeE
Confidence 8888854311 0010 23499999999999987643 799
Q ss_pred EEEEecccccCCC
Q psy11859 432 VVIVRPSIVLPSF 444 (851)
Q Consensus 432 ~~ivRp~~V~G~~ 444 (851)
+.+++||.|..+.
T Consensus 193 v~~i~pg~v~t~~ 205 (280)
T PLN02253 193 VNCVSPYAVPTAL 205 (280)
T ss_pred EEEEeeCcccccc
Confidence 9999999997763
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.7e-13 Score=143.55 Aligned_cols=167 Identities=14% Similarity=0.159 Sum_probs=118.1
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+++|+||||+|+||++++++|++.| .+|.+++|.... ++++ ...+....+ ..++.++.+|++++
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g---~~v~~~~r~~~~------~~~~-----~~~~~~~~~--~~~~~~~~~D~~~~ 65 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKG---RDLALCARRTDR------LEEL-----KAELLARYP--GIKVAVAALDVNDH 65 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC---CEEEEEeCCHHH------HHHH-----HHHHHhhCC--CceEEEEEcCCCCH
Confidence 6899999999999999999999987 678888886422 2111 111222211 23688999999987
Q ss_pred cCCCCHHHHHHHh-------cCccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEee
Q psy11859 298 NLGIKDSDLLMLQ-------EEVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKM---KKLVAFIHFS 360 (851)
Q Consensus 298 ~lgls~~~~~~~~-------~~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~vS 360 (851)
+ ++..++ .++|+|||+||..... +.+...+++|+.|+.++++++... .+..+||++|
T Consensus 66 ~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~s 139 (248)
T PRK08251 66 D------QVFEVFAEFRDELGGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLIS 139 (248)
T ss_pred H------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 6 554433 3689999999865331 334567899999999999887531 2367899999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~iv 435 (851)
|..+.... +.+. ..|+.||+..+.++..++. +++++++
T Consensus 140 S~~~~~~~--------~~~~-----------------------------~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v 182 (248)
T PRK08251 140 SVSAVRGL--------PGVK-----------------------------AAYAASKAGVASLGEGLRAELAKTPIKVSTI 182 (248)
T ss_pred ccccccCC--------CCCc-----------------------------ccHHHHHHHHHHHHHHHHHHhcccCcEEEEE
Confidence 96432110 1112 3499999999988876542 7899999
Q ss_pred ecccccCC
Q psy11859 436 RPSIVLPS 443 (851)
Q Consensus 436 Rp~~V~G~ 443 (851)
+||.|.++
T Consensus 183 ~pg~v~t~ 190 (248)
T PRK08251 183 EPGYIRSE 190 (248)
T ss_pred ecCcCcch
Confidence 99998765
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-13 Score=144.59 Aligned_cols=165 Identities=13% Similarity=0.088 Sum_probs=119.0
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++|+||||||+|+||..|++.|++.| .+|++++|+... .+.+. +.+. ....++.++.+|+++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~--------~~~~----~~~~~~~~~~~D~~~ 66 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAG---WDLALVARSQDA---LEALA--------AELR----STGVKAAAYSIDLSN 66 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHH--------HHHH----hCCCcEEEEEccCCC
Confidence 46799999999999999999999998 689999986532 11111 1111 112468899999998
Q ss_pred CcCCCCHHHHHHHhc-------CccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEe
Q psy11859 297 ANLGIKDSDLLMLQE-------EVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKM---KKLVAFIHF 359 (851)
Q Consensus 297 ~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~v 359 (851)
++ ++..+++ ++|+|||+|+..... +.+...+++|+.|+.++++++... .+..++|++
T Consensus 67 ~~------~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~i 140 (241)
T PRK07454 67 PE------AIAPGIAELLEQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINV 140 (241)
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 76 5444433 589999999965321 345677999999999988877431 135789999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~i 434 (851)
||..++... .+. ..|+.||+..+.+++..+ . ++++.+
T Consensus 141 sS~~~~~~~---------~~~-----------------------------~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~ 182 (241)
T PRK07454 141 SSIAARNAF---------PQW-----------------------------GAYCVSKAALAAFTKCLAEEERSHGIRVCT 182 (241)
T ss_pred ccHHhCcCC---------CCc-----------------------------cHHHHHHHHHHHHHHHHHHHhhhhCCEEEE
Confidence 997554321 112 349999999998887653 2 899999
Q ss_pred EecccccCC
Q psy11859 435 VRPSIVLPS 443 (851)
Q Consensus 435 vRp~~V~G~ 443 (851)
+|||.+-.+
T Consensus 183 i~pg~i~t~ 191 (241)
T PRK07454 183 ITLGAVNTP 191 (241)
T ss_pred EecCcccCC
Confidence 999998765
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-13 Score=145.07 Aligned_cols=167 Identities=16% Similarity=0.093 Sum_probs=117.5
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+++||||||+|+||+++++.|++.| .+|++++|+.... +.+. +.++...+ ..++.++.+|++++
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g---~~vi~~~r~~~~~---~~~~--------~~~~~~~~--~~~~~~~~~D~~~~ 65 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEG---YRVAVADINSEKA---ANVA--------QEINAEYG--EGMAYGFGADATSE 65 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEECCHHHH---HHHH--------HHHHHhcC--CceeEEEEccCCCH
Confidence 6899999999999999999999987 6888888864321 1111 11111111 13688999999987
Q ss_pred cCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CC-ceEEEEe
Q psy11859 298 NLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KK-LVAFIHF 359 (851)
Q Consensus 298 ~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~-~~~fV~v 359 (851)
+ ++..++ ..+|+|||+|+.... .+.+...+++|+.|+.++++++... .+ -.++|++
T Consensus 66 ~------~i~~~~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ 139 (259)
T PRK12384 66 Q------SVLALSRGVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQI 139 (259)
T ss_pred H------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEe
Confidence 5 444443 368999999986542 1345678999999999888877542 12 3589999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~i 434 (851)
||..+.. +.+. ...|+.||++.+.+++.++ . ++++.+
T Consensus 140 ss~~~~~----------~~~~----------------------------~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~ 181 (259)
T PRK12384 140 NSKSGKV----------GSKH----------------------------NSGYSAAKFGGVGLTQSLALDLAEYGITVHS 181 (259)
T ss_pred cCccccc----------CCCC----------------------------CchhHHHHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 8853211 1111 1349999999888877664 2 899999
Q ss_pred EecccccCCC
Q psy11859 435 VRPSIVLPSF 444 (851)
Q Consensus 435 vRp~~V~G~~ 444 (851)
+|||.++++.
T Consensus 182 v~pg~~~~~~ 191 (259)
T PRK12384 182 LMLGNLLKSP 191 (259)
T ss_pred EecCCcccch
Confidence 9999988764
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.7e-13 Score=147.62 Aligned_cols=169 Identities=17% Similarity=0.138 Sum_probs=121.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|+++.|..... ..+.+.+.. +....++.++.+|++
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G---~~Vi~~~~~~~~~-~~~~~~~~~------------~~~~~~~~~~~~Dl~ 110 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREG---ADVAISYLPVEEE-DAQDVKKII------------EECGRKAVLLPGDLS 110 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCC---CEEEEecCCcchh-hHHHHHHHH------------HHcCCeEEEEEccCC
Confidence 578999999999999999999999998 6777776653321 112222111 011236788999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCC----c----chhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEe
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLK----L----EAELKENVAANTRGTQRLLDIALKM-KKLVAFIHF 359 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~----~----~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~v 359 (851)
+++ ++..++ .++|++||+|+... + .+.+.+.+++|+.|+..+++++... ..-.++|++
T Consensus 111 ~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~i 184 (294)
T PRK07985 111 DEK------FARSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITT 184 (294)
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEE
Confidence 875 444333 35899999998632 1 2456788999999999999998753 222589999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..++... |. ..+|+.||+..+.+++.++. ++++.+
T Consensus 185 SS~~~~~~~----------~~----------------------------~~~Y~asKaal~~l~~~la~el~~~gIrvn~ 226 (294)
T PRK07985 185 SSIQAYQPS----------PH----------------------------LLDYAATKAAILNYSRGLAKQVAEKGIRVNI 226 (294)
T ss_pred CCchhccCC----------CC----------------------------cchhHHHHHHHHHHHHHHHHHHhHhCcEEEE
Confidence 997554321 11 13499999999988876642 899999
Q ss_pred EecccccCCC
Q psy11859 435 VRPSIVLPSF 444 (851)
Q Consensus 435 vRp~~V~G~~ 444 (851)
++||.|.++.
T Consensus 227 i~PG~v~t~~ 236 (294)
T PRK07985 227 VAPGPIWTAL 236 (294)
T ss_pred EECCcCcccc
Confidence 9999999885
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-13 Score=145.24 Aligned_cols=166 Identities=13% Similarity=0.222 Sum_probs=121.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++||||||+|+||+.+++.|++.| .+|.++.|..+ .+.+.+.. +....++.++.+|++
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G---~~v~~~~~~~~----~~~~~~~~------------~~~~~~~~~~~~D~~ 73 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAG---ADIIITTHGTN----WDETRRLI------------EKEGRKVTFVQVDLT 73 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCcH----HHHHHHHH------------HhcCCceEEEEcCCC
Confidence 578999999999999999999999998 68888888621 12222111 111246889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
+++ ++..+++ .+|+|||+|+.... .+.++..+++|+.|+..+++++... .+..++|+
T Consensus 74 ~~~------~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~ 147 (258)
T PRK06935 74 KPE------SAEKVVKEALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIIN 147 (258)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 876 5555544 68999999997542 2356678999999998888777532 12468999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..++... +. ...|+.||+..|.+++.++. ++.+.
T Consensus 148 isS~~~~~~~----------~~----------------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~ 189 (258)
T PRK06935 148 IASMLSFQGG----------KF----------------------------VPAYTASKHGVAGLTKAFANELAAYNIQVN 189 (258)
T ss_pred ECCHHhccCC----------CC----------------------------chhhHHHHHHHHHHHHHHHHHhhhhCeEEE
Confidence 9996543211 11 12499999999999877643 89999
Q ss_pred EEecccccCCC
Q psy11859 434 IVRPSIVLPSF 444 (851)
Q Consensus 434 ivRp~~V~G~~ 444 (851)
+++||.|..+.
T Consensus 190 ~i~PG~v~t~~ 200 (258)
T PRK06935 190 AIAPGYIKTAN 200 (258)
T ss_pred EEEeccccccc
Confidence 99999987764
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-13 Score=143.67 Aligned_cols=168 Identities=13% Similarity=0.130 Sum_probs=118.5
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++++||||||+||||++++++|++.| .+|++..|.... ..... ...++. ...++.++.+|+++
T Consensus 5 ~~~~vlitGasg~iG~~l~~~l~~~g---~~v~~~~~~~~~-----~~~~~-----~~~~~~----~~~~~~~~~~D~~~ 67 (252)
T PRK06077 5 KDKVVVVTGSGRGIGRAIAVRLAKEG---SLVVVNAKKRAE-----EMNET-----LKMVKE----NGGEGIGVLADVST 67 (252)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCChH-----HHHHH-----HHHHHH----cCCeeEEEEeccCC
Confidence 57899999999999999999999988 567666654321 11110 111111 12356788999998
Q ss_pred CcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEeee
Q psy11859 297 ANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM-KKLVAFIHFST 361 (851)
Q Consensus 297 ~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~vST 361 (851)
++ ++..++ .++|+|||+||.... .+.+++.+++|+.|+.++++++.+. ..-.+||++||
T Consensus 68 ~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS 141 (252)
T PRK06077 68 RE------GCETLAKATIDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIAS 141 (252)
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcc
Confidence 76 444443 368999999996332 1224577899999999999998754 22357999999
Q ss_pred eeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----CCCEEEEec
Q psy11859 362 AFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----KLPVVIVRP 437 (851)
Q Consensus 362 a~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----~l~~~ivRp 437 (851)
+.++.. ..+. +.|+.||+..|.++..++. ++.+.+++|
T Consensus 142 ~~~~~~---------~~~~-----------------------------~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~P 183 (252)
T PRK06077 142 VAGIRP---------AYGL-----------------------------SIYGAMKAAVINLTKYLALELAPKIRVNAIAP 183 (252)
T ss_pred hhccCC---------CCCc-----------------------------hHHHHHHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence 765431 1222 3499999999999887644 688999999
Q ss_pred ccccCCCC
Q psy11859 438 SIVLPSFQ 445 (851)
Q Consensus 438 ~~V~G~~~ 445 (851)
|.|.++..
T Consensus 184 g~i~t~~~ 191 (252)
T PRK06077 184 GFVKTKLG 191 (252)
T ss_pred CCccChHH
Confidence 99987753
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.7e-13 Score=141.16 Aligned_cols=154 Identities=17% Similarity=0.138 Sum_probs=115.8
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
.+|+||||||||+||++++++|++.| .+|+++.|..... . ..+++.+|+++
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G---~~v~~~~r~~~~~------------------------~--~~~~~~~D~~~ 52 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLG---HQVIGIARSAIDD------------------------F--PGELFACDLAD 52 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCC---CEEEEEeCCcccc------------------------c--CceEEEeeCCC
Confidence 57899999999999999999999998 7899998875421 0 12468899998
Q ss_pred CcCCCCHHHHHHHhc------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEee
Q psy11859 297 ANLGIKDSDLLMLQE------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHFS 360 (851)
Q Consensus 297 ~~lgls~~~~~~~~~------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~vS 360 (851)
++ ++..+++ ++|+|||+|+.... .+.+...+++|+.|+.++++++... .+..++|++|
T Consensus 53 ~~------~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~s 126 (234)
T PRK07577 53 IE------QTAATLAQINEIHPVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNIC 126 (234)
T ss_pred HH------HHHHHHHHHHHhCCCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEc
Confidence 76 5554443 68999999997543 1345577999999999887776431 1367899999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~iv 435 (851)
|...++. ... ..|+.||+..|.++..++. ++.++++
T Consensus 127 S~~~~~~----------~~~-----------------------------~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i 167 (234)
T PRK07577 127 SRAIFGA----------LDR-----------------------------TSYSAAKSALVGCTRTWALELAEYGITVNAV 167 (234)
T ss_pred cccccCC----------CCc-----------------------------hHHHHHHHHHHHHHHHHHHHHHhhCcEEEEE
Confidence 9754322 111 3499999999988876532 8999999
Q ss_pred ecccccCCC
Q psy11859 436 RPSIVLPSF 444 (851)
Q Consensus 436 Rp~~V~G~~ 444 (851)
|||.+..+.
T Consensus 168 ~pg~~~t~~ 176 (234)
T PRK07577 168 APGPIETEL 176 (234)
T ss_pred ecCcccCcc
Confidence 999988663
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.2e-13 Score=141.59 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=117.4
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
++|+||||||+||++++++|++.| .+|++++|... +++++. . ...++.++.+|+++++
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G---~~V~~~~r~~~------~~~~~~---------~----~~~~~~~~~~D~~~~~ 59 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQG---WQVIACGRNQS------VLDELH---------T----QSANIFTLAFDVTDHP 59 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCC---CEEEEEECCHH------HHHHHH---------H----hcCCCeEEEeeCCCHH
Confidence 689999999999999999999998 67899988632 222211 1 1136788999999876
Q ss_pred CCCCHHHHHHHhcC----ccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEeeeeeeeC
Q psy11859 299 LGIKDSDLLMLQEE----VSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM-KKLVAFIHFSTAFCHP 366 (851)
Q Consensus 299 lgls~~~~~~~~~~----vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~vSTa~~~~ 366 (851)
++..++++ +|+++|+||...+ .+.+...+++|+.|+.++++++... .+-.++|.+||.....
T Consensus 60 ------~~~~~~~~~~~~~d~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~ 133 (240)
T PRK06101 60 ------GTKAALSQLPFIPELWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASEL 133 (240)
T ss_pred ------HHHHHHHhcccCCCEEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhcc
Confidence 66666553 6899999985432 1235678999999999999998753 1235788888854311
Q ss_pred CCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEEEEeccccc
Q psy11859 367 DQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVVIVRPSIVL 441 (851)
Q Consensus 367 ~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ivRp~~V~ 441 (851)
+.|. ...|+.||+..|.+.+.++ . +++++++|||.|.
T Consensus 134 ----------~~~~----------------------------~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~ 175 (240)
T PRK06101 134 ----------ALPR----------------------------AEAYGASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVA 175 (240)
T ss_pred ----------CCCC----------------------------CchhhHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCC
Confidence 1111 1349999999999887653 2 8999999999998
Q ss_pred CCC
Q psy11859 442 PSF 444 (851)
Q Consensus 442 G~~ 444 (851)
++.
T Consensus 176 t~~ 178 (240)
T PRK06101 176 TPL 178 (240)
T ss_pred CCC
Confidence 864
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-13 Score=144.00 Aligned_cols=168 Identities=15% Similarity=0.185 Sum_probs=121.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+.+|+||||||+|+||.+++++|++.| .+|++++|.... +.++ .+.++. ...++.++.+|++
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G---~~vvl~~r~~~~------~~~~-----~~~l~~----~~~~~~~~~~Dl~ 68 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYG---AEIIINDITAER------AELA-----VAKLRQ----EGIKAHAAPFNVT 68 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcC---CEEEEEcCCHHH------HHHH-----HHHHHh----cCCeEEEEecCCC
Confidence 468999999999999999999999998 688888886422 1111 111111 1236778999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
+++ ++..++ ..+|+|||+|+.... .+.++..+++|+.|+..+++++... .+..++|+
T Consensus 69 ~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~ 142 (254)
T PRK08085 69 HKQ------EVEAAIEHIEKDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIIN 142 (254)
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 986 555443 258999999996432 2456678999999999999887653 23468999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... ..+. ..|+.||+..|.+++.++. ++.+.
T Consensus 143 isS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~ 184 (254)
T PRK08085 143 ICSMQSELG---------RDTI-----------------------------TPYAASKGAVKMLTRGMCVELARHNIQVN 184 (254)
T ss_pred EccchhccC---------CCCC-----------------------------cchHHHHHHHHHHHHHHHHHHHhhCeEEE
Confidence 999533111 1111 3499999999999987643 89999
Q ss_pred EEecccccCCCC
Q psy11859 434 IVRPSIVLPSFQ 445 (851)
Q Consensus 434 ivRp~~V~G~~~ 445 (851)
+++||.+..+..
T Consensus 185 ~v~pG~~~t~~~ 196 (254)
T PRK08085 185 GIAPGYFKTEMT 196 (254)
T ss_pred EEEeCCCCCcch
Confidence 999999988753
|
|
| >KOG3576|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.9e-15 Score=139.97 Aligned_cols=97 Identities=29% Similarity=0.407 Sum_probs=87.9
Q ss_pred ccceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHH
Q psy11859 689 FVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELS 768 (851)
Q Consensus 689 ~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~ 768 (851)
...|+|.+|+|.|.-...|.+|++.|+..|.|-|+ .|||.|.....|++|+++|+|.+||+|. .|+|+|++..+|.
T Consensus 115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct--~cgkgfndtfdlkrh~rthtgvrpykc~--~c~kaftqrcsle 190 (267)
T KOG3576|consen 115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCT--FCGKGFNDTFDLKRHTRTHTGVRPYKCS--LCEKAFTQRCSLE 190 (267)
T ss_pred CCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHh--hccCcccchhhhhhhhccccCccccchh--hhhHHHHhhccHH
Confidence 45689999999999999999999999999999995 5999999999999999999999999998 9999999999999
Q ss_pred HhhhhcCC-----------CCCccCCCCCCcc
Q psy11859 769 RHRRSHFG-----------IKPYPCTLCVKKS 789 (851)
Q Consensus 769 ~H~r~H~g-----------ekp~~C~~Cgk~f 789 (851)
.|.+.-+| +|-|.|+.||.+.
T Consensus 191 shl~kvhgv~~~yaykerr~kl~vcedcg~t~ 222 (267)
T KOG3576|consen 191 SHLKKVHGVQHQYAYKERRAKLYVCEDCGYTS 222 (267)
T ss_pred HHHHHHcCchHHHHHHHhhhheeeecccCCCC
Confidence 99764333 5678999999853
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.1e-13 Score=142.74 Aligned_cols=169 Identities=20% Similarity=0.267 Sum_probs=118.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEE-ecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYIL-CRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l-~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
+++++||||||||+||++|++.|++.| .+|+++ .|.... .+.+. +.+.. ...++.++.+|+
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g---~~v~~~~~r~~~~---~~~~~--------~~~~~----~~~~~~~~~~D~ 64 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEG---AKVVIAYDINEEA---AQELL--------EEIKE----EGGDAIAVKADV 64 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEcCCCHHH---HHHHH--------HHHHh----cCCeEEEEECCC
Confidence 467899999999999999999999987 577777 775322 11111 11111 123688999999
Q ss_pred CCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEE
Q psy11859 295 LQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFI 357 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV 357 (851)
++++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..+||
T Consensus 65 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v 138 (247)
T PRK05565 65 SSEE------DVENLVEQIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIV 138 (247)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 9986 5554443 79999999997632 1345678999999999998887642 1256799
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||....... ... ..|+.||+..+.++...+. ++++
T Consensus 139 ~~sS~~~~~~~---------~~~-----------------------------~~y~~sK~a~~~~~~~~~~~~~~~gi~~ 180 (247)
T PRK05565 139 NISSIWGLIGA---------SCE-----------------------------VLYSASKGAVNAFTKALAKELAPSGIRV 180 (247)
T ss_pred EECCHhhccCC---------CCc-----------------------------cHHHHHHHHHHHHHHHHHHHHHHcCeEE
Confidence 99996443210 111 2399999888777765532 8999
Q ss_pred EEEecccccCCCCC
Q psy11859 433 VIVRPSIVLPSFQE 446 (851)
Q Consensus 433 ~ivRp~~V~G~~~~ 446 (851)
+++|||.|-.+...
T Consensus 181 ~~v~pg~v~t~~~~ 194 (247)
T PRK05565 181 NAVAPGAIDTEMWS 194 (247)
T ss_pred EEEEECCccCcccc
Confidence 99999998765443
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.5e-13 Score=142.69 Aligned_cols=168 Identities=18% Similarity=0.179 Sum_probs=120.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++|+||||+|.||++|+++|++.| .+|+++.|.... .+.+. +.++. ...++.++.+|++
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G---~~v~~~~r~~~~---~~~~~--------~~~~~----~~~~~~~~~~Dl~ 66 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAG---ATVAFNDGLAAE---ARELA--------AALEA----AGGRAHAIAADLA 66 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcC---CEEEEEeCCHHH---HHHHH--------HHHHh----cCCcEEEEEccCC
Confidence 467999999999999999999999998 578888775422 11111 11111 1236889999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhcC---CceEEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKMK---KLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~---~~~~fV~ 358 (851)
+++ ++..++ .++|+|||+|+.... .+.+...+++|+.|+.++++++...- +-.+||+
T Consensus 67 ~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~ 140 (250)
T PRK12939 67 DPA------SVQRFFDAAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVN 140 (250)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 876 555444 368999999997542 13456778999999999999986531 1348999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+.... .+. ..|+.+|+..|.+++.++. ++.+.
T Consensus 141 isS~~~~~~~---------~~~-----------------------------~~y~~sK~~~~~~~~~l~~~~~~~~i~v~ 182 (250)
T PRK12939 141 LASDTALWGA---------PKL-----------------------------GAYVASKGAVIGMTRSLARELGGRGITVN 182 (250)
T ss_pred ECchhhccCC---------CCc-----------------------------chHHHHHHHHHHHHHHHHHHHhhhCEEEE
Confidence 9995442211 111 2399999999999876542 79999
Q ss_pred EEecccccCCCC
Q psy11859 434 IVRPSIVLPSFQ 445 (851)
Q Consensus 434 ivRp~~V~G~~~ 445 (851)
+++||.|..+..
T Consensus 183 ~v~pg~v~t~~~ 194 (250)
T PRK12939 183 AIAPGLTATEAT 194 (250)
T ss_pred EEEECCCCCccc
Confidence 999999877654
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4e-13 Score=141.87 Aligned_cols=165 Identities=18% Similarity=0.234 Sum_probs=118.4
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+|+|+||||||+||.++++.|++.| .+|++++|..... +.+. +.++.. ...++.++.+|++++
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G---~~Vi~~~r~~~~~---~~~~--------~~~~~~---~~~~~~~~~~Dl~~~ 63 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAG---ARLYLAARDVERL---ERLA--------DDLRAR---GAVAVSTHELDILDT 63 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcC---CEEEEEeCCHHHH---HHHH--------HHHHHh---cCCeEEEEecCCCCh
Confidence 3689999999999999999999998 6799999875321 1111 111111 123789999999988
Q ss_pred cCCCCHHHHHHHhc----CccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEeeeee
Q psy11859 298 NLGIKDSDLLMLQE----EVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKM---KKLVAFIHFSTAF 363 (851)
Q Consensus 298 ~lgls~~~~~~~~~----~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~vSTa~ 363 (851)
+ ++..+++ .+|+|||+|+..... +.+...+++|+.|+.++++++... .+..+||++||.+
T Consensus 64 ~------~~~~~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~ 137 (243)
T PRK07102 64 A------SHAAFLDSLPALPDIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVA 137 (243)
T ss_pred H------HHHHHHHHHhhcCCEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEeccc
Confidence 6 5554443 579999999865321 234467899999999999887642 2357899999965
Q ss_pred eeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEEEEecc
Q psy11859 364 CHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVVIVRPS 438 (851)
Q Consensus 364 ~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ivRp~ 438 (851)
+... .|.. ..|+.||+..+.+++.++ . ++++.+++|+
T Consensus 138 ~~~~----------~~~~----------------------------~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg 179 (243)
T PRK07102 138 GDRG----------RASN----------------------------YVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPG 179 (243)
T ss_pred ccCC----------CCCC----------------------------cccHHHHHHHHHHHHHHHHHhhccCcEEEEEecC
Confidence 3211 1111 239999999998887653 2 8999999999
Q ss_pred cccCC
Q psy11859 439 IVLPS 443 (851)
Q Consensus 439 ~V~G~ 443 (851)
.|.++
T Consensus 180 ~v~t~ 184 (243)
T PRK07102 180 FVRTP 184 (243)
T ss_pred cccCh
Confidence 99876
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.2e-13 Score=143.45 Aligned_cols=167 Identities=16% Similarity=0.203 Sum_probs=119.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+.+++++||||+|+||+.+++.|++.| .+|+++.|... ..+...++ .. ...++.++.+|++
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G---~~Vv~~~r~~~---~~~~~~~~---------~~----~~~~~~~~~~Dl~ 64 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHG---ANLILLDISPE---IEKLADEL---------CG----RGHRCTAVVADVR 64 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEecCCHH---HHHHHHHH---------HH----hCCceEEEECCCC
Confidence 467999999999999999999999998 67888888642 11111111 11 1236788999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
+++ ++..+++ .+|+|||+|+..... +.+++.+++|+.|+.++++++... ....++|+
T Consensus 65 ~~~------~v~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~ 138 (263)
T PRK08226 65 DPA------SVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVM 138 (263)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 876 5555443 689999999975431 234567999999999999987642 12468999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... +.|. ...|+.||+..|.++..++. ++.+.
T Consensus 139 isS~~~~~~---------~~~~----------------------------~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~ 181 (263)
T PRK08226 139 MSSVTGDMV---------ADPG----------------------------ETAYALTKAAIVGLTKSLAVEYAQSGIRVN 181 (263)
T ss_pred ECcHHhccc---------CCCC----------------------------cchHHHHHHHHHHHHHHHHHHhcccCcEEE
Confidence 998543210 1111 13499999999988876643 79999
Q ss_pred EEecccccCCC
Q psy11859 434 IVRPSIVLPSF 444 (851)
Q Consensus 434 ivRp~~V~G~~ 444 (851)
.++||.|.++.
T Consensus 182 ~i~pg~v~t~~ 192 (263)
T PRK08226 182 AICPGYVRTPM 192 (263)
T ss_pred EEecCcccCHH
Confidence 99999998763
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.3e-13 Score=140.07 Aligned_cols=169 Identities=16% Similarity=0.143 Sum_probs=116.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+|+||||||+||++++++|++.| .+|+++.+.... ...+.+.+ +. ....++..+.+|++
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G---~~vv~~~~~~~~-~~~~~~~~---------~~----~~~~~~~~~~~D~~ 63 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDG---FKVVAGCGPNSP-RRVKWLED---------QK----ALGFDFIASEGNVG 63 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcC---CEEEEEcCCChH-HHHHHHHH---------HH----hcCCcEEEEEcCCC
Confidence 357899999999999999999999998 567665543211 11111111 11 11236778899999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|.+ ++..++ .++|+|||+||.... .+.+...+++|+.|+.++++++... .+..++|+
T Consensus 64 ~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~ 137 (246)
T PRK12938 64 DWD------STKAAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIIN 137 (246)
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 876 554443 368999999997542 2346678999999988876665431 23578999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... ..+. ..|+.+|+..|.+++.++. ++++.
T Consensus 138 isS~~~~~~---------~~~~-----------------------------~~y~~sK~a~~~~~~~l~~~~~~~gi~v~ 179 (246)
T PRK12938 138 ISSVNGQKG---------QFGQ-----------------------------TNYSTAKAGIHGFTMSLAQEVATKGVTVN 179 (246)
T ss_pred EechhccCC---------CCCC-----------------------------hhHHHHHHHHHHHHHHHHHHhhhhCeEEE
Confidence 999644211 1112 3499999988887765532 89999
Q ss_pred EEecccccCCCC
Q psy11859 434 IVRPSIVLPSFQ 445 (851)
Q Consensus 434 ivRp~~V~G~~~ 445 (851)
+++||.+.+|..
T Consensus 180 ~i~pg~~~t~~~ 191 (246)
T PRK12938 180 TVSPGYIGTDMV 191 (246)
T ss_pred EEEecccCCchh
Confidence 999999988754
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.1e-13 Score=142.58 Aligned_cols=163 Identities=18% Similarity=0.241 Sum_probs=114.8
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++++||||||||+||+++++.|++.| ..|.+..|... ++.++. . ....++.++.+|+++
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g---~~v~~~~~~~~------~~~~~~---------~---~~~~~~~~~~~D~~~ 63 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQG---AIVGLHGTRVE------KLEALA---------A---ELGERVKIFPANLSD 63 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEcCCHH------HHHHHH---------H---HhCCceEEEEccCCC
Confidence 57899999999999999999999998 56776666432 111111 0 012368889999998
Q ss_pred CcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEe
Q psy11859 297 ANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHF 359 (851)
Q Consensus 297 ~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~v 359 (851)
.+ ++..++ .++|+|||+|+.... .+.+...+++|+.|+.++++++... .+..+||++
T Consensus 64 ~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ 137 (245)
T PRK12936 64 RD------EVKALGQKAEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINI 137 (245)
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 76 554443 368999999997532 2456778999999999998887532 235789999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..+... .|. ...|+.||+..+.+++.++. ++++++
T Consensus 138 sS~~~~~~----------~~~----------------------------~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~ 179 (245)
T PRK12936 138 TSVVGVTG----------NPG----------------------------QANYCASKAGMIGFSKSLAQEIATRNVTVNC 179 (245)
T ss_pred CCHHhCcC----------CCC----------------------------CcchHHHHHHHHHHHHHHHHHhhHhCeEEEE
Confidence 99543211 111 12399999977776655432 899999
Q ss_pred EecccccCCC
Q psy11859 435 VRPSIVLPSF 444 (851)
Q Consensus 435 vRp~~V~G~~ 444 (851)
++|+.+..+.
T Consensus 180 i~pg~~~t~~ 189 (245)
T PRK12936 180 VAPGFIESAM 189 (245)
T ss_pred EEECcCcCch
Confidence 9999886654
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.9e-13 Score=140.93 Aligned_cols=168 Identities=17% Similarity=0.206 Sum_probs=116.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+++||||+|+||++++++|++.| ..|.+..+.... ...+. ...+.. ...++..+..|++
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G---~~v~~~~~~~~~-----~~~~~-----~~~~~~----~~~~~~~~~~D~~ 64 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDG---ALVAIHYGNRKE-----EAEET-----VYEIQS----NGGSAFSIGANLE 64 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CeEEEEcCCCHH-----HHHHH-----HHHHHh----cCCceEEEecccC
Confidence 468999999999999999999999998 567666432211 11111 111111 1235678899999
Q ss_pred CCcCCCCHHHHHH----Hh---------cCccEEEEccccCCc---c----hhHHHHHHHHHHHHHHHHHHHHhc-CCce
Q psy11859 296 QANLGIKDSDLLM----LQ---------EEVSVVFNGAASLKL---E----AELKENVAANTRGTQRLLDIALKM-KKLV 354 (851)
Q Consensus 296 ~~~lgls~~~~~~----~~---------~~vd~ViH~AA~~~~---~----~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~ 354 (851)
+.+ +... +. .++|+|||+||.... . +.++..+++|+.|+..+++++... ..-.
T Consensus 65 ~~~------~~~~~~~~~~~~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g 138 (252)
T PRK12747 65 SLH------GVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNS 138 (252)
T ss_pred CHH------HHHHHHHHHHHHhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCC
Confidence 865 2221 11 169999999996432 1 235678899999999999887653 2235
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~ 429 (851)
++|++||..+... ..+. ..|+.||+..+.+++.++. +
T Consensus 139 ~iv~isS~~~~~~---------~~~~-----------------------------~~Y~~sKaa~~~~~~~la~e~~~~g 180 (252)
T PRK12747 139 RIINISSAATRIS---------LPDF-----------------------------IAYSMTKGAINTMTFTLAKQLGARG 180 (252)
T ss_pred eEEEECCcccccC---------CCCc-----------------------------hhHHHHHHHHHHHHHHHHHHHhHcC
Confidence 8999999754321 1111 3499999999998876543 8
Q ss_pred CCEEEEecccccCCC
Q psy11859 430 LPVVIVRPSIVLPSF 444 (851)
Q Consensus 430 l~~~ivRp~~V~G~~ 444 (851)
+.+.++.||.|.++.
T Consensus 181 irvn~v~Pg~v~t~~ 195 (252)
T PRK12747 181 ITVNAILPGFIKTDM 195 (252)
T ss_pred CEEEEEecCCccCch
Confidence 999999999998774
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.6e-13 Score=142.30 Aligned_cols=161 Identities=20% Similarity=0.130 Sum_probs=116.9
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+||||||||+||+.++++|++.| .+|++++|.... .+.+.+ ..+ ..++.++.+|+++.+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~~------------~~~--~~~~~~~~~D~~~~~ 61 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEG---WRVGAYDINEAG---LAALAA------------ELG--AGNAWTGALDVTDRA 61 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCC---CeEEEEeCCHHH---HHHHHH------------Hhc--CCceEEEEecCCCHH
Confidence 689999999999999999999998 688898886432 111111 111 236889999999876
Q ss_pred CCCCHHHHHHHh--------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEee
Q psy11859 299 LGIKDSDLLMLQ--------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHFS 360 (851)
Q Consensus 299 lgls~~~~~~~~--------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~vS 360 (851)
++..++ .++|+|||+|+.... .+.++..+++|+.|+.++++++... .+..++|++|
T Consensus 62 ------~v~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~is 135 (260)
T PRK08267 62 ------AWDAALADFAAATGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTS 135 (260)
T ss_pred ------HHHHHHHHHHHHcCCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 554443 357999999997542 1346678999999999999988531 1257899999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~iv 435 (851)
|..+... .+. ...|+.||+..+.+++.++. ++++.++
T Consensus 136 S~~~~~~----------~~~----------------------------~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i 177 (260)
T PRK08267 136 SASAIYG----------QPG----------------------------LAVYSATKFAVRGLTEALDLEWRRHGIRVADV 177 (260)
T ss_pred chhhCcC----------CCC----------------------------chhhHHHHHHHHHHHHHHHHHhcccCcEEEEE
Confidence 9644211 011 13499999999988877642 7999999
Q ss_pred ecccccCC
Q psy11859 436 RPSIVLPS 443 (851)
Q Consensus 436 Rp~~V~G~ 443 (851)
+|+.+-.+
T Consensus 178 ~pg~~~t~ 185 (260)
T PRK08267 178 MPLFVDTA 185 (260)
T ss_pred ecCCcCCc
Confidence 99987654
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.7e-13 Score=140.99 Aligned_cols=167 Identities=17% Similarity=0.139 Sum_probs=119.2
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++++||||||+|+||.+++++|++.| .+|+++.+.... ..+++.+ .++ ....++.++.+|+++
T Consensus 1 ~~k~vlItGas~giG~~~a~~l~~~G---~~V~~~~~~~~~--~~~~~~~--------~~~----~~~~~~~~~~~Dl~~ 63 (256)
T PRK12743 1 MAQVAIVTASDSGIGKACALLLAQQG---FDIGITWHSDEE--GAKETAE--------EVR----SHGVRAEIRQLDLSD 63 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCChH--HHHHHHH--------HHH----hcCCceEEEEccCCC
Confidence 36899999999999999999999998 678777664321 1112111 111 112468899999998
Q ss_pred CcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhcC----CceEEEE
Q psy11859 297 ANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKMK----KLVAFIH 358 (851)
Q Consensus 297 ~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~----~~~~fV~ 358 (851)
++ ++..++ ..+|+|||+|+.... .+.+...+.+|+.|+.++++++...- +-.++|+
T Consensus 64 ~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~ 137 (256)
T PRK12743 64 LP------EGAQALDKLIQRLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIIN 137 (256)
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 76 544433 358999999997542 13566789999999999999886531 1258999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..... +..+. ..|+.+|+..+.+++.++. ++++.
T Consensus 138 isS~~~~~---------~~~~~-----------------------------~~Y~~sK~a~~~l~~~la~~~~~~~i~v~ 179 (256)
T PRK12743 138 ITSVHEHT---------PLPGA-----------------------------SAYTAAKHALGGLTKAMALELVEHGILVN 179 (256)
T ss_pred EeeccccC---------CCCCc-----------------------------chhHHHHHHHHHHHHHHHHHhhhhCeEEE
Confidence 99953211 11122 2499999999998876643 79999
Q ss_pred EEecccccCCC
Q psy11859 434 IVRPSIVLPSF 444 (851)
Q Consensus 434 ivRp~~V~G~~ 444 (851)
.++||.|.++.
T Consensus 180 ~v~Pg~~~t~~ 190 (256)
T PRK12743 180 AVAPGAIATPM 190 (256)
T ss_pred EEEeCCccCcc
Confidence 99999999874
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.7e-13 Score=142.21 Aligned_cols=168 Identities=15% Similarity=0.163 Sum_probs=120.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+|+||||+|+||.++++.|++.| .+|+++.|.... .+.+. +.+... ....++.++.+|++
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G---~~vv~~~r~~~~---~~~~~--------~~~~~~--~~~~~~~~~~~Dl~ 68 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREG---AAVALADLDAAL---AERAA--------AAIARD--VAGARVLAVPADVT 68 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHH--------HHHHhc--cCCceEEEEEccCC
Confidence 578999999999999999999999998 688888886432 11111 111111 01236889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
+++ ++..+++ .+|+|||+||.... .+.+...+++|+.|+..+++++... .+..++|+
T Consensus 69 ~~~------~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~ 142 (260)
T PRK07063 69 DAA------SVAAAVAAAEEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVN 142 (260)
T ss_pred CHH------HHHHHHHHHHHHhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEE
Confidence 876 5554443 68999999996432 2356678999999999999987531 22468999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... ..+. ..|+.||+..+.+++.++. ++.+.
T Consensus 143 isS~~~~~~---------~~~~-----------------------------~~Y~~sKaa~~~~~~~la~el~~~gIrvn 184 (260)
T PRK07063 143 IASTHAFKI---------IPGC-----------------------------FPYPVAKHGLLGLTRALGIEYAARNVRVN 184 (260)
T ss_pred ECChhhccC---------CCCc-----------------------------hHHHHHHHHHHHHHHHHHHHhCccCeEEE
Confidence 999654321 0111 2399999999998877642 79999
Q ss_pred EEecccccCC
Q psy11859 434 IVRPSIVLPS 443 (851)
Q Consensus 434 ivRp~~V~G~ 443 (851)
.|+||.|-.+
T Consensus 185 ~v~PG~v~t~ 194 (260)
T PRK07063 185 AIAPGYIETQ 194 (260)
T ss_pred EEeeCCccCh
Confidence 9999988654
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.8e-13 Score=141.03 Aligned_cols=159 Identities=19% Similarity=0.161 Sum_probs=118.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||+++++.|++.| ..|++++|.... . ....++.++.+|++
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g---~~v~~~~r~~~~--------~---------------~~~~~~~~~~~D~~ 57 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAG---ATVVVCGRRAPE--------T---------------VDGRPAEFHAADVR 57 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCChhh--------h---------------hcCCceEEEEccCC
Confidence 468999999999999999999999988 688899886432 0 01136788999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc----CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM----KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~~~~~fV 357 (851)
+++ ++..+++ ++|+|||+|+.... .+.+...+++|+.|+.++++++... +...++|
T Consensus 58 ~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii 131 (252)
T PRK07856 58 DPD------QVAALVDAIVERHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIV 131 (252)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 876 5555443 56999999986432 1345678999999999999988641 1235899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----CCCEE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----KLPVV 433 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----~l~~~ 433 (851)
++||..+... .|. ...|+.||+..|.+++.++. .+.+.
T Consensus 132 ~isS~~~~~~----------~~~----------------------------~~~Y~~sK~a~~~l~~~la~e~~~~i~v~ 173 (252)
T PRK07856 132 NIGSVSGRRP----------SPG----------------------------TAAYGAAKAGLLNLTRSLAVEWAPKVRVN 173 (252)
T ss_pred EEcccccCCC----------CCC----------------------------CchhHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 9999654321 111 13499999999999987653 47888
Q ss_pred EEecccccCCC
Q psy11859 434 IVRPSIVLPSF 444 (851)
Q Consensus 434 ivRp~~V~G~~ 444 (851)
.++||.|..+.
T Consensus 174 ~i~Pg~v~t~~ 184 (252)
T PRK07856 174 AVVVGLVRTEQ 184 (252)
T ss_pred EEEeccccChH
Confidence 89999887653
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.9e-13 Score=139.38 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=111.1
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
.|+||||||+|+||+++++.|++. .+|++++|.... .+.+. +. ...++++.+|++|+
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~----~~V~~~~r~~~~---~~~~~------------~~----~~~~~~~~~D~~~~ 59 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT----HTLLLGGRPAER---LDELA------------AE----LPGATPFPVDLTDP 59 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh----CCEEEEeCCHHH---HHHHH------------HH----hccceEEecCCCCH
Confidence 478999999999999999999986 468899886421 11111 00 12578899999987
Q ss_pred cCCCCHHHHHHHhc---CccEEEEccccCCcc-------hhHHHHHHHHHHHHH----HHHHHHHhcCCceEEEEeeeee
Q psy11859 298 NLGIKDSDLLMLQE---EVSVVFNGAASLKLE-------AELKENVAANTRGTQ----RLLDIALKMKKLVAFIHFSTAF 363 (851)
Q Consensus 298 ~lgls~~~~~~~~~---~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~----~ll~~a~~~~~~~~fV~vSTa~ 363 (851)
+ ++..+++ ++|+|||+|+..... +.+...+++|+.|+. ++++++++. ..++|++||..
T Consensus 60 ~------~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~v~~ss~~ 131 (227)
T PRK08219 60 E------AIAAAVEQLGRLDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAA--HGHVVFINSGA 131 (227)
T ss_pred H------HHHHHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCeEEEEcchH
Confidence 6 6766665 599999999975431 235567899999954 444444443 46899999976
Q ss_pred eeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC---C-CCEEEEeccc
Q psy11859 364 CHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT---K-LPVVIVRPSI 439 (851)
Q Consensus 364 ~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~---~-l~~~ivRp~~ 439 (851)
+.... .+. ..|+.+|...|.++..++. + +++..++|+.
T Consensus 132 ~~~~~---------~~~-----------------------------~~y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~ 173 (227)
T PRK08219 132 GLRAN---------PGW-----------------------------GSYAASKFALRALADALREEEPGNVRVTSVHPGR 173 (227)
T ss_pred hcCcC---------CCC-----------------------------chHHHHHHHHHHHHHHHHHHhcCCceEEEEecCC
Confidence 54321 112 2399999999988876643 4 8888888887
Q ss_pred ccCC
Q psy11859 440 VLPS 443 (851)
Q Consensus 440 V~G~ 443 (851)
+.++
T Consensus 174 ~~~~ 177 (227)
T PRK08219 174 TDTD 177 (227)
T ss_pred ccch
Confidence 6554
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.5e-13 Score=140.20 Aligned_cols=172 Identities=18% Similarity=0.191 Sum_probs=118.5
Q ss_pred hhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 213 ARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 213 ~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
.+..++++||||||+|+||.++++.|++.| .+|++++|.... .+.+ .+.+.+. ...++.++.+
T Consensus 7 ~~~~~~k~vlItG~~g~iG~~la~~l~~~G---~~Vi~~~r~~~~---~~~~--------~~~l~~~---~~~~~~~~~~ 69 (247)
T PRK08945 7 PDLLKDRIILVTGAGDGIGREAALTYARHG---ATVILLGRTEEK---LEAV--------YDEIEAA---GGPQPAIIPL 69 (247)
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHCC---CcEEEEeCCHHH---HHHH--------HHHHHhc---CCCCceEEEe
Confidence 346789999999999999999999999987 688899886421 1111 1112211 1236778888
Q ss_pred CCCCCcCCCCHHHHHHH-------hcCccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHh---cCCce
Q psy11859 293 DILQANLGIKDSDLLML-------QEEVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALK---MKKLV 354 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~-------~~~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~---~~~~~ 354 (851)
|+++.+ ..++..+ ...+|+|||+||.... .+.+...+++|+.|+.++++++.. ..+..
T Consensus 70 d~~~~~----~~~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~ 145 (247)
T PRK08945 70 DLLTAT----PQNYQQLADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAA 145 (247)
T ss_pred cccCCC----HHHHHHHHHHHHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCC
Confidence 887432 1232222 2368999999987432 135668899999999999888752 12367
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~ 429 (851)
+||++||..+... .+. ...|+.||+.+|.++..++. +
T Consensus 146 ~iv~~ss~~~~~~----------~~~----------------------------~~~Y~~sK~a~~~~~~~~~~~~~~~~ 187 (247)
T PRK08945 146 SLVFTSSSVGRQG----------RAN----------------------------WGAYAVSKFATEGMMQVLADEYQGTN 187 (247)
T ss_pred EEEEEccHhhcCC----------CCC----------------------------CcccHHHHHHHHHHHHHHHHHhcccC
Confidence 8999999643211 111 13499999999999887643 7
Q ss_pred CCEEEEecccccCC
Q psy11859 430 LPVVIVRPSIVLPS 443 (851)
Q Consensus 430 l~~~ivRp~~V~G~ 443 (851)
+++.+++|+.|-++
T Consensus 188 i~~~~v~pg~v~t~ 201 (247)
T PRK08945 188 LRVNCINPGGTRTA 201 (247)
T ss_pred EEEEEEecCCccCc
Confidence 88889999887654
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.8e-13 Score=142.29 Aligned_cols=164 Identities=15% Similarity=0.181 Sum_probs=119.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++||||||+|+||.++++.|++.| .+|+++.|.... .+...+ + . ..++.++.+|++
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G---~~Vi~~~r~~~~---~~~~~~---------~----~--~~~~~~~~~Dl~ 71 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKG---ARVALLDRSEDV---AEVAAQ---------L----L--GGNAKGLVCDVS 71 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHH---------h----h--CCceEEEEecCC
Confidence 568999999999999999999999988 678898886431 111111 0 0 135678999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
+++ ++..+++ ++|+|||+||..... +.+...+++|+.|+.++++++... ....+||+
T Consensus 72 ~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~ 145 (255)
T PRK06841 72 DSQ------SVEAAVAAVISAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVN 145 (255)
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEE
Confidence 876 5554433 689999999975431 345678999999999999998652 13578999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... .|. ...|+.||+..|.+++.++. ++.+.
T Consensus 146 ~sS~~~~~~----------~~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~ 187 (255)
T PRK06841 146 LASQAGVVA----------LER----------------------------HVAYCASKAGVVGMTKVLALEWGPYGITVN 187 (255)
T ss_pred EcchhhccC----------CCC----------------------------CchHHHHHHHHHHHHHHHHHHHHhhCeEEE
Confidence 999643211 111 12499999998888876543 79999
Q ss_pred EEecccccCCC
Q psy11859 434 IVRPSIVLPSF 444 (851)
Q Consensus 434 ivRp~~V~G~~ 444 (851)
.++||.|..+.
T Consensus 188 ~v~pg~v~t~~ 198 (255)
T PRK06841 188 AISPTVVLTEL 198 (255)
T ss_pred EEEeCcCcCcc
Confidence 99999988764
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.3e-13 Score=144.16 Aligned_cols=166 Identities=16% Similarity=0.188 Sum_probs=118.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++|+||||+|+||+++++.|++.| .+|++++|... +++++ .+.+.. ...++.++.+|++
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G---~~Vi~~~R~~~------~l~~~-----~~~l~~----~~~~~~~~~~Dl~ 99 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRG---ATVVAVARRED------LLDAV-----ADRITR----AGGDAMAVPCDLS 99 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHH-----HHHHHh----cCCcEEEEEccCC
Confidence 467999999999999999999999988 68999998642 12111 111111 1236788999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCcc---------hhHHHHHHHHHHHHHHHHHHHH----hcCCceE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKLE---------AELKENVAANTRGTQRLLDIAL----KMKKLVA 355 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~---------~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~ 355 (851)
|++ ++..+++ ++|+|||+||..... +.+...+++|+.|+.++++++. +. +..+
T Consensus 100 d~~------~v~~~~~~~~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~ 172 (293)
T PRK05866 100 DLD------AVDALVADVEKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLER-GDGH 172 (293)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcE
Confidence 876 5555554 789999999865321 2345678999999998887764 33 3578
Q ss_pred EEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CC
Q psy11859 356 FIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KL 430 (851)
Q Consensus 356 fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l 430 (851)
+|++||+.+.... .|. .+.|+.||+..+.++..++. ++
T Consensus 173 iv~isS~~~~~~~---------~p~----------------------------~~~Y~asKaal~~l~~~la~e~~~~gI 215 (293)
T PRK05866 173 IINVATWGVLSEA---------SPL----------------------------FSVYNASKAALSAVSRVIETEWGDRGV 215 (293)
T ss_pred EEEECChhhcCCC---------CCC----------------------------cchHHHHHHHHHHHHHHHHHHhcccCc
Confidence 9999996443210 111 13499999999988776532 89
Q ss_pred CEEEEecccccCC
Q psy11859 431 PVVIVRPSIVLPS 443 (851)
Q Consensus 431 ~~~ivRp~~V~G~ 443 (851)
.+.+++||.|-.+
T Consensus 216 ~v~~v~pg~v~T~ 228 (293)
T PRK05866 216 HSTTLYYPLVATP 228 (293)
T ss_pred EEEEEEcCcccCc
Confidence 9999999977654
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.5e-13 Score=141.03 Aligned_cols=171 Identities=20% Similarity=0.159 Sum_probs=119.0
Q ss_pred cCCCEEEEecCcc--HHHHHHHHHHHHhCCCccEEEEEecCCCCCC------HHHHHHHHhcChhhHHHhhhCcccCCCe
Q psy11859 216 YAGRSVLVTGGTG--FMGKVLLEKLLRSCPDIGKVYILCRAKRGLT------PKARLAEFSKLPVFERLRKECPAQLSRL 287 (851)
Q Consensus 216 ~~~k~VlVTGatG--FIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~------~~~rl~~~~~~~~f~~l~~~~~~~~~~v 287 (851)
+++++|||||||| .||.+++++|++.| ..|+++.|...+.. ..+... +..+......++
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G---~~vi~~~r~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 69 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKG---IDIFFTYWSPYDKTMPWGMHDKEPVL----------LKEEIESYGVRC 69 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcC---CcEEEEcCCccccccccccchhhHHH----------HHHHHHhcCCeE
Confidence 3678999999996 59999999999998 68888888632110 011100 111111122468
Q ss_pred EEEEcCCCCCcCCCCHHHHHHHh-------cCccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhc---
Q psy11859 288 HIIEGDILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKM--- 350 (851)
Q Consensus 288 ~~v~gDi~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~--- 350 (851)
+++.+|+++++ ++..++ ..+|+|||+||..... +.++..+++|+.|+..+++++...
T Consensus 70 ~~~~~D~~~~~------~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ 143 (256)
T PRK12748 70 EHMEIDLSQPY------APNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDG 143 (256)
T ss_pred EEEECCCCCHH------HHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Confidence 99999999876 444333 3589999999875321 345677999999999999988642
Q ss_pred CCceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--
Q psy11859 351 KKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-- 428 (851)
Q Consensus 351 ~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-- 428 (851)
....++|++||..++.+. .+. ..|+.||++.|.+++.++.
T Consensus 144 ~~~~~iv~~ss~~~~~~~---------~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~ 185 (256)
T PRK12748 144 KAGGRIINLTSGQSLGPM---------PDE-----------------------------LAYAATKGAIEAFTKSLAPEL 185 (256)
T ss_pred cCCeEEEEECCccccCCC---------CCc-----------------------------hHHHHHHHHHHHHHHHHHHHH
Confidence 124689999996553321 111 2399999999999876542
Q ss_pred ---CCCEEEEecccccCC
Q psy11859 429 ---KLPVVIVRPSIVLPS 443 (851)
Q Consensus 429 ---~l~~~ivRp~~V~G~ 443 (851)
++++++++||.+..+
T Consensus 186 ~~~~i~v~~i~Pg~~~t~ 203 (256)
T PRK12748 186 AEKGITVNAVNPGPTDTG 203 (256)
T ss_pred HHhCeEEEEEEeCcccCC
Confidence 899999999987655
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.2e-13 Score=138.42 Aligned_cols=164 Identities=12% Similarity=0.192 Sum_probs=115.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|+++.|... ++.+++ ..+ ..+.++.+|++
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G---~~v~~~~~~~~-----~~~~~l---------~~~-----~~~~~~~~D~~ 61 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDG---ANVRFTYAGSK-----DAAERL---------AQE-----TGATAVQTDSA 61 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEecCCCH-----HHHHHH---------HHH-----hCCeEEecCCC
Confidence 468999999999999999999999998 56777665432 112111 111 03567889999
Q ss_pred CCcCCCCHHHHHHHh---cCccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHh-cCCceEEEEeeeeee
Q psy11859 296 QANLGIKDSDLLMLQ---EEVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALK-MKKLVAFIHFSTAFC 364 (851)
Q Consensus 296 ~~~lgls~~~~~~~~---~~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~-~~~~~~fV~vSTa~~ 364 (851)
+.+ .+..++ ..+|+|||+|+..... +.++..+++|+.|+..++..+.. +..-.++|++||..+
T Consensus 62 ~~~------~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~ 135 (237)
T PRK12742 62 DRD------AVIDVVRKSGALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNG 135 (237)
T ss_pred CHH------HHHHHHHHhCCCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 875 444443 3589999999975331 34668899999999999766554 332468999999643
Q ss_pred eCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEeccc
Q psy11859 365 HPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVRPSI 439 (851)
Q Consensus 365 ~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivRp~~ 439 (851)
.. .+..+. ..|+.||+..|.+++.++. ++.+.+++||.
T Consensus 136 ~~--------~~~~~~-----------------------------~~Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~ 178 (237)
T PRK12742 136 DR--------MPVAGM-----------------------------AAYAASKSALQGMARGLARDFGPRGITINVVQPGP 178 (237)
T ss_pred cc--------CCCCCC-----------------------------cchHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCc
Confidence 11 011112 3499999999998876543 79999999998
Q ss_pred ccCCC
Q psy11859 440 VLPSF 444 (851)
Q Consensus 440 V~G~~ 444 (851)
|..+.
T Consensus 179 ~~t~~ 183 (237)
T PRK12742 179 IDTDA 183 (237)
T ss_pred ccCCc
Confidence 87654
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.1e-13 Score=143.89 Aligned_cols=157 Identities=14% Similarity=0.200 Sum_probs=114.5
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+||||||+|+||+++++.|++.| .+|+++.|.... +.++ .. .++.++.+|+++++
T Consensus 2 k~vlItGasggiG~~la~~l~~~G---~~V~~~~r~~~~------~~~~---------~~------~~~~~~~~Dl~~~~ 57 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAG---YEVWATARKAED------VEAL---------AA------AGFTAVQLDVNDGA 57 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCC---CEEEEEeCCHHH------HHHH---------HH------CCCeEEEeeCCCHH
Confidence 689999999999999999999988 688998886421 1111 11 14678899999875
Q ss_pred CCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEeeee
Q psy11859 299 LGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM--KKLVAFIHFSTA 362 (851)
Q Consensus 299 lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~--~~~~~fV~vSTa 362 (851)
++..++ .++|+|||+|+.... .+.+...+++|+.|+.++++++... .+..++|++||.
T Consensus 58 ------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~ 131 (274)
T PRK05693 58 ------ALARLAEELEAEHGGLDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSV 131 (274)
T ss_pred ------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCc
Confidence 554443 368999999996532 1356678999999999999987542 123578999986
Q ss_pred eeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEEEEec
Q psy11859 363 FCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVVIVRP 437 (851)
Q Consensus 363 ~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ivRp 437 (851)
.+... ... ...|+.||+..|.+...++ . ++.+++++|
T Consensus 132 ~~~~~---------~~~-----------------------------~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~p 173 (274)
T PRK05693 132 SGVLV---------TPF-----------------------------AGAYCASKAAVHALSDALRLELAPFGVQVMEVQP 173 (274)
T ss_pred cccCC---------CCC-----------------------------ccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEec
Confidence 54321 011 1349999999888776543 2 899999999
Q ss_pred ccccCC
Q psy11859 438 SIVLPS 443 (851)
Q Consensus 438 ~~V~G~ 443 (851)
|.|..+
T Consensus 174 g~v~t~ 179 (274)
T PRK05693 174 GAIASQ 179 (274)
T ss_pred Cccccc
Confidence 999765
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.9e-13 Score=140.63 Aligned_cols=167 Identities=17% Similarity=0.170 Sum_probs=118.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+++||||+|.||.++++.|++.| .+|+++.|.... .+.+ .+.++. ...++.++.+|++
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G---~~v~~~~r~~~~---~~~~--------~~~~~~----~~~~~~~~~~D~~ 65 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREG---AKVVVGARRQAE---LDQL--------VAEIRA----EGGEAVALAGDVR 65 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHH--------HHHHHh----cCCcEEEEEcCCC
Confidence 467899999999999999999999998 689999887432 1111 111111 1236888999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKM---KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV 357 (851)
+++ ++..+++ .+|+|||+||.... .+.+...+++|+.|+..+.+++... .+-.++|
T Consensus 66 ~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv 139 (254)
T PRK07478 66 DEA------YAKALVALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLI 139 (254)
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEE
Confidence 886 5554443 68999999997432 1345678999999888876655431 1246799
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..++... ..+. ..|+.||+..+.+++.++. ++.+
T Consensus 140 ~~sS~~~~~~~--------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v 182 (254)
T PRK07478 140 FTSTFVGHTAG--------FPGM-----------------------------AAYAASKAGLIGLTQVLAAEYGAQGIRV 182 (254)
T ss_pred EEechHhhccC--------CCCc-----------------------------chhHHHHHHHHHHHHHHHHHHhhcCEEE
Confidence 99996543210 1111 3499999999998877643 7899
Q ss_pred EEEecccccCC
Q psy11859 433 VIVRPSIVLPS 443 (851)
Q Consensus 433 ~ivRp~~V~G~ 443 (851)
.+++||.|-.+
T Consensus 183 ~~v~PG~v~t~ 193 (254)
T PRK07478 183 NALLPGGTDTP 193 (254)
T ss_pred EEEeeCcccCc
Confidence 99999998655
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.2e-13 Score=140.47 Aligned_cols=172 Identities=19% Similarity=0.220 Sum_probs=121.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|.||.+++++|++.| .+|+++.|.... .+.+. +.+.. ...++.++.+|++
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~--------~~l~~----~~~~~~~~~~D~~ 68 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAG---AQVAIAARHLDA---LEKLA--------DEIGT----SGGKVVPVCCDVS 68 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCCHHH---HHHHH--------HHHHh----cCCeEEEEEccCC
Confidence 578999999999999999999999998 678888886422 11111 11211 1236888999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhc----CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKM----KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~----~~~~~fV 357 (851)
+++ ++..++ .++|+|||+|+..... +.++..+++|+.|+..+++++... +.-.++|
T Consensus 69 ~~~------~~~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv 142 (253)
T PRK05867 69 QHQ------QVTSMLDQVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVII 142 (253)
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEE
Confidence 876 554443 3789999999975431 345677899999999999988542 1123688
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+... ..|.. ...|+.||+..+.+++.++. ++.+
T Consensus 143 ~~sS~~~~~~---------~~~~~---------------------------~~~Y~asKaal~~~~~~la~e~~~~gI~v 186 (253)
T PRK05867 143 NTASMSGHII---------NVPQQ---------------------------VSHYCASKAAVIHLTKAMAVELAPHKIRV 186 (253)
T ss_pred EECcHHhcCC---------CCCCC---------------------------ccchHHHHHHHHHHHHHHHHHHhHhCeEE
Confidence 9988643210 00110 13499999999999887643 8999
Q ss_pred EEEecccccCCCCCC
Q psy11859 433 VIVRPSIVLPSFQEP 447 (851)
Q Consensus 433 ~ivRp~~V~G~~~~p 447 (851)
.+++||.|-.+....
T Consensus 187 n~i~PG~v~t~~~~~ 201 (253)
T PRK05867 187 NSVSPGYILTELVEP 201 (253)
T ss_pred EEeecCCCCCccccc
Confidence 999999997765433
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.6e-13 Score=142.38 Aligned_cols=167 Identities=20% Similarity=0.268 Sum_probs=119.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++|+||||+|+||+++++.|++.| .+|.+++|.... .+.+. +.+. ....++.++.+|++
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~--------~~~~----~~~~~~~~~~~Dl~ 69 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAG---AKVAILDRNQEK---AEAVV--------AEIK----AAGGEALAVKADVL 69 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHH--------HHHH----hcCCeEEEEECCCC
Confidence 578999999999999999999999998 678888886421 11111 1111 11236889999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc----------------------chhHHHHHHHHHHHHHHHHHH
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL----------------------EAELKENVAANTRGTQRLLDI 346 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~----------------------~~~~~~~~~~Nv~Gt~~ll~~ 346 (851)
+++ ++..++ .++|+|||+|+.... .+.+...+++|+.|+..++++
T Consensus 70 ~~~------~v~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~ 143 (278)
T PRK08277 70 DKE------SLEQARQQILEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQV 143 (278)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHH
Confidence 876 444443 368999999995421 134667899999999877666
Q ss_pred HHhc---CCceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHH
Q psy11859 347 ALKM---KKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLV 423 (851)
Q Consensus 347 a~~~---~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v 423 (851)
+... .+-.++|++||..++... .+. ..|+.||+..|.++
T Consensus 144 ~~~~~~~~~~g~ii~isS~~~~~~~---------~~~-----------------------------~~Y~~sK~a~~~l~ 185 (278)
T PRK08277 144 FAKDMVGRKGGNIINISSMNAFTPL---------TKV-----------------------------PAYSAAKAAISNFT 185 (278)
T ss_pred HHHHHHhcCCcEEEEEccchhcCCC---------CCC-----------------------------chhHHHHHHHHHHH
Confidence 5431 124689999997554311 111 34999999999988
Q ss_pred HHHhC-----CCCEEEEecccccCCC
Q psy11859 424 DEYKT-----KLPVVIVRPSIVLPSF 444 (851)
Q Consensus 424 ~~~~~-----~l~~~ivRp~~V~G~~ 444 (851)
+.++. ++.+.+++||.|..+.
T Consensus 186 ~~la~e~~~~girvn~v~Pg~v~t~~ 211 (278)
T PRK08277 186 QWLAVHFAKVGIRVNAIAPGFFLTEQ 211 (278)
T ss_pred HHHHHHhCccCeEEEEEEeccCcCcc
Confidence 76643 7999999999998874
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.2e-13 Score=140.27 Aligned_cols=167 Identities=17% Similarity=0.204 Sum_probs=118.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++||||||+|+||+++++.|++.| .+|+++.|.... .+.+. +.+. +...++.++.+|++
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G---~~Vi~~~r~~~~---~~~~~--------~~~~----~~~~~~~~~~~D~~ 67 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQG---AHVIVSSRKLDG---CQAVA--------DAIV----AAGGKAEALACHIG 67 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHH--------HHHH----hcCCeEEEEEcCCC
Confidence 567999999999999999999999998 688999885422 11111 1111 11235778999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKM---KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV 357 (851)
+.+ ++..++ ..+|+|||+|+.... .+.++..+++|+.|+..+++++... ....++|
T Consensus 68 ~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv 141 (252)
T PRK07035 68 EME------QIDALFAHIRERHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIV 141 (252)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEE
Confidence 876 444433 258999999985421 1345678999999999888777432 1357899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||.++... ..+. ..|+.||++.|.+++.++. ++++
T Consensus 142 ~~sS~~~~~~---------~~~~-----------------------------~~Y~~sK~al~~~~~~l~~e~~~~gi~v 183 (252)
T PRK07035 142 NVASVNGVSP---------GDFQ-----------------------------GIYSITKAAVISMTKAFAKECAPFGIRV 183 (252)
T ss_pred EECchhhcCC---------CCCC-----------------------------cchHHHHHHHHHHHHHHHHHHhhcCEEE
Confidence 9998644321 1112 3499999999999987753 8999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
..+.||.|-.+.
T Consensus 184 ~~i~PG~v~t~~ 195 (252)
T PRK07035 184 NALLPGLTDTKF 195 (252)
T ss_pred EEEeeccccCcc
Confidence 999999886543
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.9e-13 Score=141.71 Aligned_cols=212 Identities=12% Similarity=0.140 Sum_probs=136.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++++++|||||+|+||..+++.|++.| .+|++++|.... +.+.. +.++. ...++.++.+|++
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G---~~vi~~~r~~~~------~~~~~-----~~~~~----~~~~~~~~~~D~~ 64 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKG---AKLALIDLNQEK------LEEAV-----AECGA----LGTEVRGYAANVT 64 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHH------HHHHH-----HHHHh----cCCceEEEEcCCC
Confidence 468899999999999999999999988 578888876422 11110 11111 1236888999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc----------------chhHHHHHHHHHHHHHHHHHHHHh---
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL----------------EAELKENVAANTRGTQRLLDIALK--- 349 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~----------------~~~~~~~~~~Nv~Gt~~ll~~a~~--- 349 (851)
+++ ++..++ ..+|+|||+|+.... .+.+...+++|+.|+..+++.+..
T Consensus 65 ~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~ 138 (253)
T PRK08217 65 DEE------DVEATFAQIAEDFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMI 138 (253)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 875 443332 357999999985321 134556788999999988765542
Q ss_pred -cCCceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC
Q psy11859 350 -MKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT 428 (851)
Q Consensus 350 -~~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~ 428 (851)
...-..+|++||...++. .+. ..|+.||+..|.+++.++.
T Consensus 139 ~~~~~~~iv~~ss~~~~~~----------~~~-----------------------------~~Y~~sK~a~~~l~~~la~ 179 (253)
T PRK08217 139 ESGSKGVIINISSIARAGN----------MGQ-----------------------------TNYSASKAGVAAMTVTWAK 179 (253)
T ss_pred hcCCCeEEEEEccccccCC----------CCC-----------------------------chhHHHHHHHHHHHHHHHH
Confidence 212246899998644332 112 3399999999999877642
Q ss_pred -----CCCEEEEecccccCCCCCC-chhHhhhhcCCce-EEEEcccCceeEEEeec--CCCCccEEEEeCC
Q psy11859 429 -----KLPVVIVRPSIVLPSFQEP-VPGWVDSLNGPVG-VLVASGKGVVRSMILND--LSTETQVFNISSN 490 (851)
Q Consensus 429 -----~l~~~ivRp~~V~G~~~~p-~p~~i~~~~~~~~-~~~~~g~~v~~~~~~~~--~~~~~~iyni~~~ 490 (851)
+++++.++|+.|.++.... .|.+.+.+....+ ..++...++++.+.... ....|++|++++|
T Consensus 180 ~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~~~gg 250 (253)
T PRK08217 180 ELARYGIRVAAIAPGVIETEMTAAMKPEALERLEKMIPVGRLGEPEEIAHTVRFIIENDYVTGRVLEIDGG 250 (253)
T ss_pred HHHHcCcEEEEEeeCCCcCccccccCHHHHHHHHhcCCcCCCcCHHHHHHHHHHHHcCCCcCCcEEEeCCC
Confidence 8999999999998876543 3444443322211 11223344433322211 1236778888776
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.2e-13 Score=140.58 Aligned_cols=164 Identities=16% Similarity=0.241 Sum_probs=115.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+|+||||+|+||+++++.|++.| .+|+++.+.... ...++ ..+. ..++.++.+|++
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G---~~vv~~~~~~~~-----~~~~~---------~~~~---~~~~~~~~~D~~ 62 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREG---ARVVVNYHQSED-----AAEAL---------ADEL---GDRAIALQADVT 62 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCC---CeEEEEcCCCHH-----HHHHH---------HHHh---CCceEEEEcCCC
Confidence 357899999999999999999999998 567665553221 11111 1111 137889999999
Q ss_pred CCcCCCCHHHHHHHhc-------C-ccEEEEccccCC---------c----chhHHHHHHHHHHHHHHHHHHHHhc---C
Q psy11859 296 QANLGIKDSDLLMLQE-------E-VSVVFNGAASLK---------L----EAELKENVAANTRGTQRLLDIALKM---K 351 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~-vd~ViH~AA~~~---------~----~~~~~~~~~~Nv~Gt~~ll~~a~~~---~ 351 (851)
+++ ++..+++ . +|+|||+|+... + .+.+.+.+++|+.|+.++++++... .
T Consensus 63 ~~~------~~~~~~~~~~~~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ 136 (253)
T PRK08642 63 DRE------QVQAMFATATEHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQ 136 (253)
T ss_pred CHH------HHHHHHHHHHHHhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhc
Confidence 876 5554443 2 899999997521 1 1345577999999999999998631 2
Q ss_pred CceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC---
Q psy11859 352 KLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--- 428 (851)
Q Consensus 352 ~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--- 428 (851)
+..++|++||..... +..|. +.|+.||+..|.+++.++.
T Consensus 137 ~~g~iv~iss~~~~~---------~~~~~-----------------------------~~Y~~sK~a~~~l~~~la~~~~ 178 (253)
T PRK08642 137 GFGRIINIGTNLFQN---------PVVPY-----------------------------HDYTTAKAALLGLTRNLAAELG 178 (253)
T ss_pred CCeEEEEECCccccC---------CCCCc-----------------------------cchHHHHHHHHHHHHHHHHHhC
Confidence 346899999853211 01122 3499999999999988753
Q ss_pred --CCCEEEEecccccCC
Q psy11859 429 --KLPVVIVRPSIVLPS 443 (851)
Q Consensus 429 --~l~~~ivRp~~V~G~ 443 (851)
++.+..++||.|-.+
T Consensus 179 ~~~i~v~~i~pG~v~t~ 195 (253)
T PRK08642 179 PYGITVNMVSGGLLRTT 195 (253)
T ss_pred ccCeEEEEEeecccCCc
Confidence 788999999988654
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.9e-13 Score=140.33 Aligned_cols=170 Identities=15% Similarity=0.123 Sum_probs=120.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++++++|||||+|+||++++++|++.| .+|++++|.... ..+.+. +.+.. ...++.++.+|++
T Consensus 6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G---~~v~~~~r~~~~--~~~~~~--------~~l~~----~~~~~~~~~~D~~ 68 (254)
T PRK06114 6 LDGQVAFVTGAGSGIGQRIAIGLAQAG---ADVALFDLRTDD--GLAETA--------EHIEA----AGRRAIQIAADVT 68 (254)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCcch--HHHHHH--------HHHHh----cCCceEEEEcCCC
Confidence 478999999999999999999999998 688888886432 111111 11111 1236788999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
+++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+..+++++... .+..++|+
T Consensus 69 ~~~------~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~ 142 (254)
T PRK06114 69 SKA------DLRAAVARTEAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVN 142 (254)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEE
Confidence 876 5554433 57999999997543 2356678999999998888776431 12468999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+.... +.+. ...|+.||+..+.+++..+. ++++.
T Consensus 143 isS~~~~~~~--------~~~~----------------------------~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~ 186 (254)
T PRK06114 143 IASMSGIIVN--------RGLL----------------------------QAHYNASKAGVIHLSKSLAMEWVGRGIRVN 186 (254)
T ss_pred ECchhhcCCC--------CCCC----------------------------cchHHHHHHHHHHHHHHHHHHHhhcCeEEE
Confidence 9996543211 0000 12499999998888876643 89999
Q ss_pred EEecccccCCC
Q psy11859 434 IVRPSIVLPSF 444 (851)
Q Consensus 434 ivRp~~V~G~~ 444 (851)
+++||.|..+.
T Consensus 187 ~v~PG~i~t~~ 197 (254)
T PRK06114 187 SISPGYTATPM 197 (254)
T ss_pred EEeecCccCcc
Confidence 99999998764
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=137.51 Aligned_cols=166 Identities=14% Similarity=0.119 Sum_probs=118.9
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
++|+||||+|+||+++++.|++.| .+|++++|.... ....+. ........++.++.+|+++++
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g---~~vi~~~r~~~~--~~~~~~------------~~~~~~~~~~~~~~~D~~~~~ 65 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDG---YRVIATYFSGND--CAKDWF------------EEYGFTEDQVRLKELDVTDTE 65 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcC---CEEEEEeCCcHH--HHHHHH------------HHhhccCCeEEEEEcCCCCHH
Confidence 689999999999999999999987 689999887531 111111 011112346889999999876
Q ss_pred CCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHH----HhcCCceEEEEee
Q psy11859 299 LGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIA----LKMKKLVAFIHFS 360 (851)
Q Consensus 299 lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a----~~~~~~~~fV~vS 360 (851)
.+..+++ .+|+|||+|+.... .+.++..+++|+.|+.+++.++ ++.+ ..+||++|
T Consensus 66 ------~v~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~is 138 (245)
T PRK12824 66 ------ECAEALAEIEEEEGPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQG-YGRIINIS 138 (245)
T ss_pred ------HHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CeEEEEEC
Confidence 5444432 58999999997532 2446678999999999985544 4443 67999999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~iv 435 (851)
|..++.. .|.. ..|+.||+..+.+++.++. ++++.++
T Consensus 139 s~~~~~~----------~~~~----------------------------~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v 180 (245)
T PRK12824 139 SVNGLKG----------QFGQ----------------------------TNYSAAKAGMIGFTKALASEGARYGITVNCI 180 (245)
T ss_pred ChhhccC----------CCCC----------------------------hHHHHHHHHHHHHHHHHHHHHHHhCeEEEEE
Confidence 9655422 1111 1399999988888776542 8999999
Q ss_pred ecccccCCCCC
Q psy11859 436 RPSIVLPSFQE 446 (851)
Q Consensus 436 Rp~~V~G~~~~ 446 (851)
+|+.+.++...
T Consensus 181 ~pg~~~t~~~~ 191 (245)
T PRK12824 181 APGYIATPMVE 191 (245)
T ss_pred EEcccCCcchh
Confidence 99999887543
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-12 Score=139.86 Aligned_cols=167 Identities=14% Similarity=0.170 Sum_probs=119.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++||||||+|+||++++++|++.| .+|++++|.... .+++.. .++. ...++.++.+|++
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G---~~vv~~~r~~~~---~~~~~~--------~l~~----~~~~~~~~~~D~~ 70 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAG---ASVVVSDINADA---ANHVVD--------EIQQ----LGGQAFACRCDIT 70 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC---CeEEEEeCCHHH---HHHHHH--------HHHh----cCCcEEEEEccCC
Confidence 468999999999999999999999998 678888875432 122211 1111 1236788999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc---c---hhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEe
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL---E---AELKENVAANTRGTQRLLDIALKM---KKLVAFIHF 359 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~---~---~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~v 359 (851)
+++ ++..++ .++|+|||+||.... + +.+...+++|+.|+.++++++... .+..++|++
T Consensus 71 ~~~------~i~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~i 144 (255)
T PRK06113 71 SEQ------ELSALADFALSKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTI 144 (255)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEE
Confidence 876 444433 358999999997532 2 455677999999999999998631 123589999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..+... ..+ ...|+.||+..+.+++.++. ++.+.+
T Consensus 145 sS~~~~~~---------~~~-----------------------------~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~ 186 (255)
T PRK06113 145 TSMAAENK---------NIN-----------------------------MTSYASSKAAASHLVRNMAFDLGEKNIRVNG 186 (255)
T ss_pred ecccccCC---------CCC-----------------------------cchhHHHHHHHHHHHHHHHHHhhhhCeEEEE
Confidence 99654211 111 13499999999999987653 788999
Q ss_pred EecccccCCC
Q psy11859 435 VRPSIVLPSF 444 (851)
Q Consensus 435 vRp~~V~G~~ 444 (851)
+.||.|-.+.
T Consensus 187 v~pg~~~t~~ 196 (255)
T PRK06113 187 IAPGAILTDA 196 (255)
T ss_pred Eecccccccc
Confidence 9999887654
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.2e-13 Score=141.05 Aligned_cols=166 Identities=18% Similarity=0.203 Sum_probs=114.0
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEE-ecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYIL-CRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l-~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
++||||||+|+||++++++|++.| .+|.++ .|.... ..+...+ +. ....++.++.+|++|+
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g---~~v~~~~~~~~~~--~~~~~~~---------~~----~~~~~~~~~~~D~~d~ 63 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEG---YTVAVNYQQNLHA--AQEVVNL---------IT----QAGGKAFVLQADISDE 63 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCChHH--HHHHHHH---------HH----hCCCeEEEEEccCCCH
Confidence 579999999999999999999998 566654 343211 1111111 11 1123578899999998
Q ss_pred cCCCCHHHHHHHhc-------CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhcC------CceEE
Q psy11859 298 NLGIKDSDLLMLQE-------EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKMK------KLVAF 356 (851)
Q Consensus 298 ~lgls~~~~~~~~~-------~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~~------~~~~f 356 (851)
+ ++..+++ .+|+|||+|+.... .+.+...+++|+.|+.++++++...- +-.+|
T Consensus 64 ~------~i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~ 137 (247)
T PRK09730 64 N------QVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAI 137 (247)
T ss_pred H------HHHHHHHHHHHhCCCCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 6 5555443 46899999996422 12455789999999998887765431 12469
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh-----CCCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK-----TKLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~-----~~l~ 431 (851)
|++||..+... .|.. ...|+.+|+..|.++..++ .+++
T Consensus 138 v~~sS~~~~~~----------~~~~---------------------------~~~Y~~sK~~~~~~~~~l~~~~~~~~i~ 180 (247)
T PRK09730 138 VNVSSAASRLG----------APGE---------------------------YVDYAASKGAIDTLTTGLSLEVAAQGIR 180 (247)
T ss_pred EEECchhhccC----------CCCc---------------------------ccchHhHHHHHHHHHHHHHHHHHHhCeE
Confidence 99999644221 1111 1239999999998887553 2899
Q ss_pred EEEEecccccCCCC
Q psy11859 432 VVIVRPSIVLPSFQ 445 (851)
Q Consensus 432 ~~ivRp~~V~G~~~ 445 (851)
++++||+.|++|..
T Consensus 181 v~~i~pg~~~~~~~ 194 (247)
T PRK09730 181 VNCVRPGFIYTEMH 194 (247)
T ss_pred EEEEEeCCCcCccc
Confidence 99999999999854
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=140.00 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=117.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||+++++.|++.| .+|.+++|...... ..++.++.+|++
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~G---~~v~~~~~~~~~~~------------------------~~~~~~~~~D~~ 59 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLANG---ANVVNADIHGGDGQ------------------------HENYQFVPTDVS 59 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCccccc------------------------cCceEEEEccCC
Confidence 578999999999999999999999998 67888887654310 126788999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc----------------chhHHHHHHHHHHHHHHHHHHHHhcC-
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL----------------EAELKENVAANTRGTQRLLDIALKMK- 351 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~----------------~~~~~~~~~~Nv~Gt~~ll~~a~~~~- 351 (851)
+++ ++..+++ .+|+|||+||.... .+.++..+++|+.|+..+++++...-
T Consensus 60 ~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~ 133 (266)
T PRK06171 60 SAE------EVNHTVAEIIEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMV 133 (266)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHH
Confidence 886 5554433 58999999996421 13456789999999999999987531
Q ss_pred --CceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-
Q psy11859 352 --KLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT- 428 (851)
Q Consensus 352 --~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~- 428 (851)
+-.++|++||..+... .... ..|+.||+..+.+++.++.
T Consensus 134 ~~~~g~iv~isS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~l~~~la~e 175 (266)
T PRK06171 134 KQHDGVIVNMSSEAGLEG---------SEGQ-----------------------------SCYAATKAALNSFTRSWAKE 175 (266)
T ss_pred hcCCcEEEEEccccccCC---------CCCC-----------------------------chhHHHHHHHHHHHHHHHHH
Confidence 2347999999654321 1111 3499999999998877643
Q ss_pred ----CCCEEEEeccccc
Q psy11859 429 ----KLPVVIVRPSIVL 441 (851)
Q Consensus 429 ----~l~~~ivRp~~V~ 441 (851)
++.+.+++||.|-
T Consensus 176 ~~~~gi~v~~v~pG~~~ 192 (266)
T PRK06171 176 LGKHNIRVVGVAPGILE 192 (266)
T ss_pred hhhcCeEEEEEeccccc
Confidence 8999999999884
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.6e-13 Score=140.23 Aligned_cols=170 Identities=18% Similarity=0.221 Sum_probs=122.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+|+||||+|.||+.++++|++.| .+|+++.|.... +.++ .+.+....+ ..++.++.+|++
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G---~~v~~~~r~~~~------~~~~-----~~~l~~~~~--~~~~~~~~~Dl~ 70 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLG---ADVLIVARDADA------LAQA-----RDELAEEFP--EREVHGLAADVS 70 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcC---CEEEEEeCCHHH------HHHH-----HHHHHhhCC--CCeEEEEECCCC
Confidence 478999999999999999999999998 678888886422 1111 111222111 237889999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh---cCCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK---MKKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~---~~~~~~fV~ 358 (851)
+++ ++..++ .++|+|||+|+.... .+.+...+.+|+.|+.++++++.. ..+..++|+
T Consensus 71 ~~~------~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~ 144 (257)
T PRK09242 71 DDE------DRRAILDWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVN 144 (257)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEE
Confidence 876 444333 368999999996422 245667899999999999998853 113578999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+..+. .+. ..|+.||...+.+++.++. ++++.
T Consensus 145 ~sS~~~~~~~---------~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~~i~v~ 186 (257)
T PRK09242 145 IGSVSGLTHV---------RSG-----------------------------APYGMTKAALLQMTRNLAVEWAEDGIRVN 186 (257)
T ss_pred ECccccCCCC---------CCC-----------------------------cchHHHHHHHHHHHHHHHHHHHHhCeEEE
Confidence 9997654321 111 3499999999998876542 89999
Q ss_pred EEecccccCCCC
Q psy11859 434 IVRPSIVLPSFQ 445 (851)
Q Consensus 434 ivRp~~V~G~~~ 445 (851)
.++||.|.++..
T Consensus 187 ~i~Pg~i~t~~~ 198 (257)
T PRK09242 187 AVAPWYIRTPLT 198 (257)
T ss_pred EEEECCCCCccc
Confidence 999999987754
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=139.13 Aligned_cols=166 Identities=14% Similarity=0.134 Sum_probs=121.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+|+||||+|+||+.+++.|++.| .+|+++.|.... +.++ ...+++ ...++.++.+|++
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G---~~v~~~~r~~~~------~~~~-----~~~~~~----~~~~~~~~~~Dl~ 70 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAG---AHVLVNGRNAAT------LEAA-----VAALRA----AGGAAEALAFDIA 70 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcC---CeEEEEeCCHHH------HHHH-----HHHHHh----cCCceEEEEccCC
Confidence 578999999999999999999999988 689999886421 1111 111111 1236889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh----cCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK----MKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~----~~~~~~fV 357 (851)
+++ ++..+++ .+|+|||+|+.... .+.+++.+++|+.|+.++++++.. . +..+||
T Consensus 71 ~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv 143 (256)
T PRK06124 71 DEE------AVAAAFARIDAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQ-GYGRII 143 (256)
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEE
Confidence 876 5544433 57999999997532 134567799999999999977754 3 357899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+... .|. ...|+.||...+.+++.++. ++.+
T Consensus 144 ~~ss~~~~~~----------~~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~~i~v 185 (256)
T PRK06124 144 AITSIAGQVA----------RAG----------------------------DAVYPAAKQGLTGLMRALAAEFGPHGITS 185 (256)
T ss_pred EEeechhccC----------CCC----------------------------ccHhHHHHHHHHHHHHHHHHHHHHhCcEE
Confidence 9999654211 111 13499999999988876542 8999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
.+++|+.|.++.
T Consensus 186 ~~i~pg~v~t~~ 197 (256)
T PRK06124 186 NAIAPGYFATET 197 (256)
T ss_pred EEEEECCccCcc
Confidence 999999998875
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-12 Score=136.90 Aligned_cols=159 Identities=18% Similarity=0.197 Sum_probs=118.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+++||||+|+||+++++.|++.| .+|+++.|..... ...++.++.+|++
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G---~~v~~~~r~~~~~------------------------~~~~~~~~~~D~~ 55 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQG---AQVYGVDKQDKPD------------------------LSGNFHFLQLDLS 55 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCC---CEEEEEeCCcccc------------------------cCCcEEEEECChH
Confidence 578999999999999999999999988 6788888864321 0136788999999
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCC----c----chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEeeeeee
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLK----L----EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHFSTAFC 364 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~----~----~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~vSTa~~ 364 (851)
++ -+........+|+|||+|+... + .+.+...+++|+.|+.++++++... .+-.++|++||+++
T Consensus 56 ~~-----~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~ 130 (235)
T PRK06550 56 DD-----LEPLFDWVPSVDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIAS 130 (235)
T ss_pred HH-----HHHHHHhhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhh
Confidence 76 1234444567999999999532 1 1346678999999999999988642 12357999999755
Q ss_pred eCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEeccc
Q psy11859 365 HPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVRPSI 439 (851)
Q Consensus 365 ~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivRp~~ 439 (851)
... .+. ...|+.||+..+.++..++. ++++++++||.
T Consensus 131 ~~~----------~~~----------------------------~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~ 172 (235)
T PRK06550 131 FVA----------GGG----------------------------GAAYTASKHALAGFTKQLALDYAKDGIQVFGIAPGA 172 (235)
T ss_pred ccC----------CCC----------------------------CcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCC
Confidence 321 111 13499999998887765442 89999999999
Q ss_pred ccCCC
Q psy11859 440 VLPSF 444 (851)
Q Consensus 440 V~G~~ 444 (851)
|.++.
T Consensus 173 v~t~~ 177 (235)
T PRK06550 173 VKTPM 177 (235)
T ss_pred ccCcc
Confidence 98775
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-12 Score=139.26 Aligned_cols=171 Identities=15% Similarity=0.200 Sum_probs=117.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCH-HHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTP-KARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~-~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
+++++|+||||+|+||+++++.|++.| .+|+++.|....... ...+.+. .+.++ ....++.++.+|+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~----~~~~~~~~~~~D~ 71 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDG---ANIVIAAKTAEPHPKLPGTIHTA-----AEEIE----AAGGQALPLVGDV 71 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEecccccccchhhHHHHH-----HHHHH----hcCCceEEEEecC
Confidence 467899999999999999999999998 688999987543211 1111111 11111 1123688999999
Q ss_pred CCCcCCCCHHHHHHHhc-------CccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhc---CCceEEE
Q psy11859 295 LQANLGIKDSDLLMLQE-------EVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKM---KKLVAFI 357 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV 357 (851)
++++ ++..+++ ++|+|||+||..... +.+...+++|+.|+.++++++... ..-.++|
T Consensus 72 ~~~~------~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv 145 (273)
T PRK08278 72 RDED------QVAAAVAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHIL 145 (273)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEE
Confidence 9986 5554443 689999999975431 345677999999999999999642 1124688
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||...... .+..+. ..|+.||++.|.+++.++. ++.+
T Consensus 146 ~iss~~~~~~-------~~~~~~-----------------------------~~Y~~sK~a~~~~~~~la~el~~~~I~v 189 (273)
T PRK08278 146 TLSPPLNLDP-------KWFAPH-----------------------------TAYTMAKYGMSLCTLGLAEEFRDDGIAV 189 (273)
T ss_pred EECCchhccc-------cccCCc-----------------------------chhHHHHHHHHHHHHHHHHHhhhcCcEE
Confidence 8887421100 001122 3499999999999987653 7899
Q ss_pred EEEecccc
Q psy11859 433 VIVRPSIV 440 (851)
Q Consensus 433 ~ivRp~~V 440 (851)
..+.|+.+
T Consensus 190 ~~i~Pg~~ 197 (273)
T PRK08278 190 NALWPRTT 197 (273)
T ss_pred EEEeCCCc
Confidence 99999843
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=138.79 Aligned_cols=168 Identities=16% Similarity=0.209 Sum_probs=115.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCC-CCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKR-GLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~-~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
+++|+||||||+|+||.++++.|++.| .+|+++.+... .....+.+.+ .+.. ...++.++.+|+
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G---~~vv~i~~~~~~~~~~~~~~~~--------~l~~----~~~~~~~~~~D~ 70 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQG---AKAVAIHYNSAASKADAEETVA--------AVKA----AGAKAVAFQADL 70 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCC---CcEEEEecCCccchHHHHHHHH--------HHHH----hCCcEEEEecCc
Confidence 467999999999999999999999988 46556655432 2111122111 1111 123688899999
Q ss_pred CCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEe
Q psy11859 295 LQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM-KKLVAFIHF 359 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~v 359 (851)
++++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+..+++++... ..-.+++++
T Consensus 71 ~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~ 144 (257)
T PRK12744 71 TTAA------AVEKLFDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTL 144 (257)
T ss_pred CCHH------HHHHHHHHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEE
Confidence 9886 5554433 68999999997422 1345678999999999999998643 112356655
Q ss_pred -eee-eeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 360 -STA-FCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 360 -STa-~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
||. .+.. |. ...|+.||+..|.+++.++. ++++
T Consensus 145 ~ss~~~~~~------------~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~~i~v 184 (257)
T PRK12744 145 VTSLLGAFT------------PF----------------------------YSAYAGSKAPVEHFTRAASKEFGARGISV 184 (257)
T ss_pred ecchhcccC------------CC----------------------------cccchhhHHHHHHHHHHHHHHhCcCceEE
Confidence 332 2211 11 13499999999999988754 6999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
.+++||.|.++.
T Consensus 185 ~~v~pg~v~t~~ 196 (257)
T PRK12744 185 TAVGPGPMDTPF 196 (257)
T ss_pred EEEecCccccch
Confidence 999999997764
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=139.61 Aligned_cols=155 Identities=19% Similarity=0.207 Sum_probs=110.0
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
++|+||||+|+||+++++.|++.| .+|+++.|.... ++.+ +. .+++.+.+|+++++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g---~~v~~~~r~~~~------~~~~---------~~------~~~~~~~~D~~~~~ 58 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG---YRVLAACRKPDD------VARM---------NS------LGFTGILLDLDDPE 58 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHH------hHHH---------Hh------CCCeEEEeecCCHH
Confidence 689999999999999999999988 578888886422 1111 10 14678899999875
Q ss_pred CCCCHHHHHHHh--------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHH----HHHHHhcCCceEEEEe
Q psy11859 299 LGIKDSDLLMLQ--------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRL----LDIALKMKKLVAFIHF 359 (851)
Q Consensus 299 lgls~~~~~~~~--------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~l----l~~a~~~~~~~~fV~v 359 (851)
++..++ ..+|+|+|+||.... .+.+...+++|+.|+.++ ++++++.+ ..++|++
T Consensus 59 ------~~~~~~~~i~~~~~~~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~iv~~ 131 (256)
T PRK08017 59 ------SVERAADEVIALTDNRLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHG-EGRIVMT 131 (256)
T ss_pred ------HHHHHHHHHHHhcCCCCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC-CCEEEEE
Confidence 333222 357999999996432 124557899999999886 55555554 6789999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHH----hC-CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY----KT-KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~----~~-~l~~~i 434 (851)
||.++... .... ..|+.||+..|.+.+.+ .. ++++++
T Consensus 132 ss~~~~~~---------~~~~-----------------------------~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~ 173 (256)
T PRK08017 132 SSVMGLIS---------TPGR-----------------------------GAYAASKYALEAWSDALRMELRHSGIKVSL 173 (256)
T ss_pred cCcccccC---------CCCc-----------------------------cHHHHHHHHHHHHHHHHHHHHhhcCCEEEE
Confidence 99754321 1112 34999999999987653 22 899999
Q ss_pred EecccccC
Q psy11859 435 VRPSIVLP 442 (851)
Q Consensus 435 vRp~~V~G 442 (851)
+|||.+..
T Consensus 174 v~pg~~~t 181 (256)
T PRK08017 174 IEPGPIRT 181 (256)
T ss_pred EeCCCccc
Confidence 99977643
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=138.32 Aligned_cols=161 Identities=24% Similarity=0.276 Sum_probs=114.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+|+||||+|+||+++++.|++.| .+|+++.|.... ...+ +.. .++.++.+|++
T Consensus 5 l~~k~~lItGas~gIG~~~a~~l~~~G---~~v~~~~~~~~~-----~~~~---------l~~------~~~~~~~~Dl~ 61 (255)
T PRK06463 5 FKGKVALITGGTRGIGRAIAEAFLREG---AKVAVLYNSAEN-----EAKE---------LRE------KGVFTIKCDVG 61 (255)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCcHH-----HHHH---------HHh------CCCeEEEecCC
Confidence 468999999999999999999999998 567776654321 1111 111 14778999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHH----hcCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIAL----KMKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV 357 (851)
+++ ++..+++ ++|+|||+|+.... .+.+...+++|+.|+..+.+.+. +. +..++|
T Consensus 62 ~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~g~iv 134 (255)
T PRK06463 62 NRD------QVKKSKEVVEKEFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLS-KNGAIV 134 (255)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCcEEE
Confidence 886 5554433 68999999987432 23456789999999766655443 23 246899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+.+.. ..+. ..|+.||+..+.+++.++. ++++
T Consensus 135 ~isS~~~~~~~--------~~~~-----------------------------~~Y~asKaa~~~~~~~la~e~~~~~i~v 177 (255)
T PRK06463 135 NIASNAGIGTA--------AEGT-----------------------------TFYAITKAGIIILTRRLAFELGKYGIRV 177 (255)
T ss_pred EEcCHHhCCCC--------CCCc-----------------------------cHhHHHHHHHHHHHHHHHHHhhhcCeEE
Confidence 99997554310 1111 2399999999998877653 7999
Q ss_pred EEEecccccCC
Q psy11859 433 VIVRPSIVLPS 443 (851)
Q Consensus 433 ~ivRp~~V~G~ 443 (851)
.+++||.|-.+
T Consensus 178 ~~i~Pg~v~t~ 188 (255)
T PRK06463 178 NAVAPGWVETD 188 (255)
T ss_pred EEEeeCCCCCc
Confidence 99999988544
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=138.56 Aligned_cols=167 Identities=19% Similarity=0.203 Sum_probs=112.4
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
.|+||||||+|+||+.+++.|++.| .+|.++.+.... .... ....++. ...++.++.+|++++
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g---~~v~~~~~~~~~-----~~~~-----~~~~~~~----~~~~~~~~~~Dl~~~ 64 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARG---WSVGINYARDAA-----AAEE-----TADAVRA----AGGRACVVAGDVANE 64 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCC---CEEEEEeCCCHH-----HHHH-----HHHHHHh----cCCcEEEEEeccCCH
Confidence 4689999999999999999999988 566665543211 1111 1111111 123688999999987
Q ss_pred cCCCCHHHHHHHh-------cCccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHH-hcCC-----ceEE
Q psy11859 298 NLGIKDSDLLMLQ-------EEVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIAL-KMKK-----LVAF 356 (851)
Q Consensus 298 ~lgls~~~~~~~~-------~~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~-~~~~-----~~~f 356 (851)
+ ++..++ ..+|+|||+|+.... .+.+...+++|+.|+..+++++. .+.. -.+|
T Consensus 65 ~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~i 138 (248)
T PRK06947 65 A------DVIAMFDAVQSAFGRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAI 138 (248)
T ss_pred H------HHHHHHHHHHHhcCCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 6 444333 368999999996432 12345679999999999976544 3321 1259
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~ 431 (851)
|++||..+... .+.+. ..|+.||+..+.++..++. +++
T Consensus 139 i~~sS~~~~~~----------~~~~~---------------------------~~Y~~sK~~~~~~~~~la~~~~~~~i~ 181 (248)
T PRK06947 139 VNVSSIASRLG----------SPNEY---------------------------VDYAGSKGAVDTLTLGLAKELGPHGVR 181 (248)
T ss_pred EEECchhhcCC----------CCCCC---------------------------cccHhhHHHHHHHHHHHHHHhhhhCcE
Confidence 99998643211 11110 2499999999988876643 799
Q ss_pred EEEEecccccCCC
Q psy11859 432 VVIVRPSIVLPSF 444 (851)
Q Consensus 432 ~~ivRp~~V~G~~ 444 (851)
++++|||.|..+.
T Consensus 182 v~~i~Pg~v~t~~ 194 (248)
T PRK06947 182 VNAVRPGLIETEI 194 (248)
T ss_pred EEEEeccCccccc
Confidence 9999999998763
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-12 Score=138.18 Aligned_cols=161 Identities=18% Similarity=0.167 Sum_probs=113.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++|++|+||||+|+||++++++|++.| .+|.+++|.... .+.+.+ +. ...++.+|++
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G---~~v~~~~r~~~~---~~~~~~------------~~-----~~~~~~~D~~ 61 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEG---ATVVVGDIDPEA---GKAAAD------------EV-----GGLFVPTDVT 61 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcC---CEEEEEeCCHHH---HHHHHH------------Hc-----CCcEEEeeCC
Confidence 578999999999999999999999998 678888885421 111100 00 1247889999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCcc---------hhHHHHHHHHHHHHHHHHHHHHh----cCCceE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKLE---------AELKENVAANTRGTQRLLDIALK----MKKLVA 355 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~---------~~~~~~~~~Nv~Gt~~ll~~a~~----~~~~~~ 355 (851)
+++ ++..+++ ++|+|||+|+..... +.++..+++|+.|+..+++.+.. . +..+
T Consensus 62 ~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~~g~ 134 (255)
T PRK06057 62 DED------AVNALFDTAAETYGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQ-GKGS 134 (255)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHh-CCcE
Confidence 876 5555443 579999999875321 23567899999999988887642 2 2457
Q ss_pred EEEeeeeee-eCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHH----HHhC-C
Q psy11859 356 FIHFSTAFC-HPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVD----EYKT-K 429 (851)
Q Consensus 356 fV~vSTa~~-~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~----~~~~-~ 429 (851)
+|++||..+ .+. +.+ ..+|+.||+..+.++. ++.. +
T Consensus 135 iv~~sS~~~~~g~---------~~~-----------------------------~~~Y~~sKaal~~~~~~l~~~~~~~g 176 (255)
T PRK06057 135 IINTASFVAVMGS---------ATS-----------------------------QISYTASKGGVLAMSRELGVQFARQG 176 (255)
T ss_pred EEEEcchhhccCC---------CCC-----------------------------CcchHHHHHHHHHHHHHHHHHHHhhC
Confidence 888888532 221 011 1349999976665554 4433 8
Q ss_pred CCEEEEecccccCCC
Q psy11859 430 LPVVIVRPSIVLPSF 444 (851)
Q Consensus 430 l~~~ivRp~~V~G~~ 444 (851)
+.++++|||.|.++.
T Consensus 177 i~v~~i~pg~v~t~~ 191 (255)
T PRK06057 177 IRVNALCPGPVNTPL 191 (255)
T ss_pred cEEEEEeeCCcCCch
Confidence 999999999998774
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-12 Score=139.43 Aligned_cols=163 Identities=17% Similarity=0.174 Sum_probs=114.0
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|+||||||+||+.++++|++.| .+|++++|.... ++++ ...++. ...++.++.+|+++++
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g---~~V~~~~r~~~~------~~~~-----~~~l~~----~~~~~~~~~~D~~~~~ 62 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREG---WRLALADVNEEG------GEET-----LKLLRE----AGGDGFYQRCDVRDYS 62 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCC---CEEEEEeCCHHH------HHHH-----HHHHHh----cCCceEEEEccCCCHH
Confidence 579999999999999999999998 678888886432 1111 111111 1236888999999876
Q ss_pred CCCCHHHHHHHh-------cCccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHH----HhcCCceEEEEee
Q psy11859 299 LGIKDSDLLMLQ-------EEVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIA----LKMKKLVAFIHFS 360 (851)
Q Consensus 299 lgls~~~~~~~~-------~~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a----~~~~~~~~fV~vS 360 (851)
++..++ .++|+|||+|+..... +.++..+++|+.|+.++++++ .+. +..++|++|
T Consensus 63 ------~~~~~~~~i~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~vs 135 (270)
T PRK05650 63 ------QLTALAQACEEKWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQ-KSGRIVNIA 135 (270)
T ss_pred ------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhC-CCCEEEEEC
Confidence 554444 3689999999976431 345567899999888877664 344 367899999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHH----hC-CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY----KT-KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~----~~-~l~~~iv 435 (851)
|..+.... ... ..|+.||+..+.+...+ .. ++.++++
T Consensus 136 S~~~~~~~---------~~~-----------------------------~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v 177 (270)
T PRK05650 136 SMAGLMQG---------PAM-----------------------------SSYNVAKAGVVALSETLLVELADDEIGVHVV 177 (270)
T ss_pred ChhhcCCC---------CCc-----------------------------hHHHHHHHHHHHHHHHHHHHhcccCcEEEEE
Confidence 96543211 111 23999999866655443 33 8999999
Q ss_pred ecccccCCC
Q psy11859 436 RPSIVLPSF 444 (851)
Q Consensus 436 Rp~~V~G~~ 444 (851)
+||.|..+.
T Consensus 178 ~Pg~v~t~~ 186 (270)
T PRK05650 178 CPSFFQTNL 186 (270)
T ss_pred ecCccccCc
Confidence 999987664
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-12 Score=138.46 Aligned_cols=167 Identities=19% Similarity=0.258 Sum_probs=118.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++|+||||+|+||++++++|++.| .+|+++.|.... .+++.+ .+.+ ...++..+.+|++
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G---~~v~~~~r~~~~---~~~~~~--------~~~~----~~~~~~~~~~D~~ 66 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREG---AKVVVADRDAAG---GEETVA--------LIRE----AGGEALFVACDVT 66 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcC---CEEEEEeCCHHH---HHHHHH--------HHHh----cCCceEEEEcCCC
Confidence 468999999999999999999999998 678898886532 111111 1111 1246889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCC----c----chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLK----L----EAELKENVAANTRGTQRLLDIALKM---KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~----~----~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV 357 (851)
+++ ++..+++ ++|+|||+|+... + .+.+.+.+++|+.|+..+++++... .+..++|
T Consensus 67 ~~~------~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii 140 (253)
T PRK06172 67 RDA------EVKALVEQTIAAYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIV 140 (253)
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 876 5554443 5799999999642 1 1356678999999998877665321 1246899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+.... .+. ..|+.||+..|.+++.++. ++.+
T Consensus 141 ~~sS~~~~~~~---------~~~-----------------------------~~Y~~sKaa~~~~~~~la~e~~~~~i~v 182 (253)
T PRK06172 141 NTASVAGLGAA---------PKM-----------------------------SIYAASKHAVIGLTKSAAIEYAKKGIRV 182 (253)
T ss_pred EECchhhccCC---------CCC-----------------------------chhHHHHHHHHHHHHHHHHHhcccCeEE
Confidence 99996543321 111 3499999999988876643 7999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
.++.||.|-.+.
T Consensus 183 ~~i~PG~v~t~~ 194 (253)
T PRK06172 183 NAVCPAVIDTDM 194 (253)
T ss_pred EEEEeCCccChh
Confidence 999999886654
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-12 Score=139.56 Aligned_cols=166 Identities=18% Similarity=0.220 Sum_probs=118.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++||||||+|+||+.++++|++.| ..|++++|..... +.+. +.+.. ...++.++.+|++
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G---~~V~~~~r~~~~~---~~~~--------~~~~~----~~~~~~~~~~Dv~ 68 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAG---ANVAVASRSQEKV---DAAV--------AQLQQ----AGPEGLGVSADVR 68 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHH---HHHH--------HHHHH----hCCceEEEECCCC
Confidence 578999999999999999999999988 6799998864321 1111 01111 1235788999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEe
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM--KKLVAFIHF 359 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~--~~~~~fV~v 359 (851)
+++ ++..+++ .+|+|||+|+.... .+.+...+++|+.|+.++++++... +.-.++|++
T Consensus 69 ~~~------~i~~~~~~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~i 142 (264)
T PRK07576 69 DYA------AVEAAFAQIADEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQI 142 (264)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 876 5555443 57999999975321 2345677999999999999988642 112489999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..+.. +.|. ...|+.||+..|.+++..+. ++.+++
T Consensus 143 ss~~~~~----------~~~~----------------------------~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~ 184 (264)
T PRK07576 143 SAPQAFV----------PMPM----------------------------QAHVCAAKAGVDMLTRTLALEWGPEGIRVNS 184 (264)
T ss_pred CChhhcc----------CCCC----------------------------ccHHHHHHHHHHHHHHHHHHHhhhcCeEEEE
Confidence 9964421 1111 12499999999999887643 789999
Q ss_pred EecccccCC
Q psy11859 435 VRPSIVLPS 443 (851)
Q Consensus 435 vRp~~V~G~ 443 (851)
++|+.+.++
T Consensus 185 v~pg~~~~t 193 (264)
T PRK07576 185 IVPGPIAGT 193 (264)
T ss_pred EecccccCc
Confidence 999988753
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-12 Score=135.48 Aligned_cols=170 Identities=15% Similarity=0.215 Sum_probs=116.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++|+||||+|+||++++++|++.| .+|+++.|.... +.+ ..+.+++. ....+.++.+|++
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g---~~V~~~~r~~~~------~~~-----~~~~l~~~---~~~~~~~~~~D~~ 66 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAG---ATVILVARHQKK------LEK-----VYDAIVEA---GHPEPFAIRFDLM 66 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcC---CEEEEEeCChHH------HHH-----HHHHHHHc---CCCCcceEEeeec
Confidence 467999999999999999999999988 678999887532 111 11222211 1124667889998
Q ss_pred CCcCCCCHHHHHHH-------h-cCccEEEEccccCC----cc----hhHHHHHHHHHHHHHHHHHHHHhc---CCceEE
Q psy11859 296 QANLGIKDSDLLML-------Q-EEVSVVFNGAASLK----LE----AELKENVAANTRGTQRLLDIALKM---KKLVAF 356 (851)
Q Consensus 296 ~~~lgls~~~~~~~-------~-~~vd~ViH~AA~~~----~~----~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~f 356 (851)
+.+ .+++..+ + ..+|+|||+||... +. +.+...+++|+.|+.++++++... .+-.++
T Consensus 67 ~~~----~~~~~~~~~~i~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~i 142 (239)
T PRK08703 67 SAE----EKEFEQFAATIAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASV 142 (239)
T ss_pred ccc----hHHHHHHHHHHHHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEE
Confidence 642 1122222 2 46899999999642 11 345567999999999998888542 124689
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC------CC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT------KL 430 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~------~l 430 (851)
|++||..+.. +.|. ...|+.||+..|.+++.++. ++
T Consensus 143 v~~ss~~~~~----------~~~~----------------------------~~~Y~~sKaa~~~~~~~la~e~~~~~~i 184 (239)
T PRK08703 143 IFVGESHGET----------PKAY----------------------------WGGFGASKAALNYLCKVAADEWERFGNL 184 (239)
T ss_pred EEEecccccc----------CCCC----------------------------ccchHHhHHHHHHHHHHHHHHhccCCCe
Confidence 9998853311 1111 12499999999999876543 58
Q ss_pred CEEEEecccccCCC
Q psy11859 431 PVVIVRPSIVLPSF 444 (851)
Q Consensus 431 ~~~ivRp~~V~G~~ 444 (851)
.+++++||.|.+|.
T Consensus 185 ~v~~v~pG~v~t~~ 198 (239)
T PRK08703 185 RANVLVPGPINSPQ 198 (239)
T ss_pred EEEEEecCcccCcc
Confidence 89999999999874
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-12 Score=135.42 Aligned_cols=167 Identities=17% Similarity=0.189 Sum_probs=115.5
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|++|||||||+||+++++.|++.| .+|+++.|+.. ++..+... .+ .....++.++.+|++++.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G---~~v~~~~r~~~-----~~~~~~~~-----~~----~~~~~~~~~~~~D~~~~~ 63 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDG---YRVAANCGPNE-----ERAEAWLQ-----EQ----GALGFDFRVVEGDVSSFE 63 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCCH-----HHHHHHHH-----HH----HhhCCceEEEEecCCCHH
Confidence 589999999999999999999998 67888888321 11111110 01 011247889999999875
Q ss_pred CCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHH----HhcCCceEEEEee
Q psy11859 299 LGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIA----LKMKKLVAFIHFS 360 (851)
Q Consensus 299 lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a----~~~~~~~~fV~vS 360 (851)
++..++ ..+|+|||+|+.... .+.+...+++|+.|+..+++.+ ++. ...++|++|
T Consensus 64 ------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~is 136 (242)
T TIGR01829 64 ------SCKAAVAKVEAELGPIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRER-GWGRIINIS 136 (242)
T ss_pred ------HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEc
Confidence 444433 358999999986532 1345677899999988866554 333 367899999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~iv 435 (851)
|.++.... .+ ...|+.+|...+.+++.++ . ++++.++
T Consensus 137 s~~~~~~~---------~~-----------------------------~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i 178 (242)
T TIGR01829 137 SVNGQKGQ---------FG-----------------------------QTNYSAAKAGMIGFTKALAQEGATKGVTVNTI 178 (242)
T ss_pred chhhcCCC---------CC-----------------------------cchhHHHHHHHHHHHHHHHHHhhhhCeEEEEE
Confidence 96432110 11 1239999998887776553 2 8999999
Q ss_pred ecccccCCCCCC
Q psy11859 436 RPSIVLPSFQEP 447 (851)
Q Consensus 436 Rp~~V~G~~~~p 447 (851)
+|+.+.++...+
T Consensus 179 ~pg~~~t~~~~~ 190 (242)
T TIGR01829 179 SPGYIATDMVMA 190 (242)
T ss_pred eeCCCcCccccc
Confidence 999998875443
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-12 Score=138.16 Aligned_cols=168 Identities=11% Similarity=0.125 Sum_probs=120.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++||||||+|+||++++++|++.| .+|+++.|.... .+.+. +.++ ....++.++.+|++
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G---~~vv~~~~~~~~---~~~~~--------~~~~----~~~~~~~~~~~Dl~ 69 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAG---ATIVFNDINQEL---VDKGL--------AAYR----ELGIEAHGYVCDVT 69 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CeEEEEeCCHHH---HHHHH--------HHHH----hcCCceEEEEcCCC
Confidence 468999999999999999999999988 678888775422 11111 1111 11236889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
+++ ++..+++ .+|+|||+||.... .+.+...+++|+.|+..+++++... .+..++|+
T Consensus 70 ~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~ 143 (265)
T PRK07097 70 DED------GVQAMVSQIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIIN 143 (265)
T ss_pred CHH------HHHHHHHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 886 5555443 48999999997542 2345677999999999888877541 13578999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... ..+. ..|+.||+..+.+++.++. ++.+.
T Consensus 144 isS~~~~~~---------~~~~-----------------------------~~Y~~sKaal~~l~~~la~e~~~~gi~v~ 185 (265)
T PRK07097 144 ICSMMSELG---------RETV-----------------------------SAYAAAKGGLKMLTKNIASEYGEANIQCN 185 (265)
T ss_pred EcCccccCC---------CCCC-----------------------------ccHHHHHHHHHHHHHHHHHHhhhcCceEE
Confidence 999543211 1111 3499999999999887653 89999
Q ss_pred EEecccccCCCC
Q psy11859 434 IVRPSIVLPSFQ 445 (851)
Q Consensus 434 ivRp~~V~G~~~ 445 (851)
.|+||.|..+..
T Consensus 186 ~v~Pg~v~t~~~ 197 (265)
T PRK07097 186 GIGPGYIATPQT 197 (265)
T ss_pred EEEeccccccch
Confidence 999999987743
|
|
| >KOG1074|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-14 Score=162.73 Aligned_cols=58 Identities=7% Similarity=-0.277 Sum_probs=52.2
Q ss_pred cccceeeeccCccCCCCCCCCCceeeeeccceeecCCccccchhhhhhhcccccCCcc
Q psy11859 661 GSVPKLISTTGLWYPNGQIRSNRFWHYFFVIFTQILPAYLVDFIMVLIRQKTFENLVR 718 (851)
Q Consensus 661 ~~~h~~i~t~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r 718 (851)
...|++..+.+-+..++.|+-|.+.|+++|||+|.+|+..|+++.+|+.|-..|+..-
T Consensus 351 ~~khkCr~CakvfgS~SaLqiHlRSHTGERPfqCnvCG~~FSTkGNLKvH~~rH~e~~ 408 (958)
T KOG1074|consen 351 FFKHKCRFCAKVFGSDSALQIHLRSHTGERPFQCNVCGNRFSTKGNLKVHFQRHREKY 408 (958)
T ss_pred cccchhhhhHhhcCchhhhhhhhhccCCCCCeeecccccccccccceeeeeeeccccC
Confidence 5567788888889999999999999999999999999999999999999988887654
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.9e-12 Score=136.34 Aligned_cols=164 Identities=14% Similarity=0.164 Sum_probs=118.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+++||||+|.||++++++|++.| .+|.++.+... .+..++ +.. ...++..+.+|++
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G---~~vv~~~~~~~----~~~~~~---------~~~----~~~~~~~~~~Dl~ 67 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAG---CDIVGINIVEP----TETIEQ---------VTA----LGRRFLSLTADLR 67 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEecCcch----HHHHHH---------HHh----cCCeEEEEECCCC
Confidence 578999999999999999999999998 67777665432 111111 111 1236788999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc----CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM----KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~~~~~fV 357 (851)
+++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++... +.-.++|
T Consensus 68 ~~~------~~~~~~~~~~~~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv 141 (253)
T PRK08993 68 KID------GIPALLERAVAEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKII 141 (253)
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 876 5554443 68999999997542 2457788999999999999987542 1125799
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+.... +.. ..|+.||+..|.+.+.++. ++.+
T Consensus 142 ~isS~~~~~~~----------~~~----------------------------~~Y~~sKaa~~~~~~~la~e~~~~gi~v 183 (253)
T PRK08993 142 NIASMLSFQGG----------IRV----------------------------PSYTASKSGVMGVTRLMANEWAKHNINV 183 (253)
T ss_pred EECchhhccCC----------CCC----------------------------cchHHHHHHHHHHHHHHHHHhhhhCeEE
Confidence 99997554321 110 2399999999988876543 7899
Q ss_pred EEEecccccCC
Q psy11859 433 VIVRPSIVLPS 443 (851)
Q Consensus 433 ~ivRp~~V~G~ 443 (851)
..++||.|-.+
T Consensus 184 ~~v~pG~v~T~ 194 (253)
T PRK08993 184 NAIAPGYMATN 194 (253)
T ss_pred EEEeeCcccCc
Confidence 99999999765
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.5e-12 Score=137.13 Aligned_cols=168 Identities=17% Similarity=0.175 Sum_probs=120.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccE-EEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGK-VYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~-V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
+++|+|+||||+|+||+.++++|++.| .+ |+++.|..... +.. .+.++ ....++.++.+|+
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G---~~~V~~~~r~~~~~---~~~--------~~~l~----~~~~~~~~~~~D~ 65 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERG---AAGLVICGRNAEKG---EAQ--------AAELE----ALGAKAVFVQADL 65 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCC---CCeEEEEcCCHHHH---HHH--------HHHHH----hcCCeEEEEEccC
Confidence 578999999999999999999999988 45 88888864221 111 11111 1123678899999
Q ss_pred CCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhcC----CceEE
Q psy11859 295 LQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKMK----KLVAF 356 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~----~~~~f 356 (851)
++++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++.... ...++
T Consensus 66 ~~~~------~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~i 139 (260)
T PRK06198 66 SDVE------DCRRVVAAADEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTI 139 (260)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEE
Confidence 9876 5554443 58999999997532 13345679999999999998886421 12479
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~ 431 (851)
|++||..+++.. ... +.|+.+|...|.+++.++. ++.
T Consensus 140 v~~ss~~~~~~~---------~~~-----------------------------~~Y~~sK~a~~~~~~~~a~e~~~~~i~ 181 (260)
T PRK06198 140 VNIGSMSAHGGQ---------PFL-----------------------------AAYCASKGALATLTRNAAYALLRNRIR 181 (260)
T ss_pred EEECCcccccCC---------CCc-----------------------------chhHHHHHHHHHHHHHHHHHhcccCeE
Confidence 999997554321 111 3499999999999886543 789
Q ss_pred EEEEecccccCCCC
Q psy11859 432 VVIVRPSIVLPSFQ 445 (851)
Q Consensus 432 ~~ivRp~~V~G~~~ 445 (851)
++.++|+.+.++..
T Consensus 182 v~~i~pg~~~t~~~ 195 (260)
T PRK06198 182 VNGLNIGWMATEGE 195 (260)
T ss_pred EEEEeeccccCcch
Confidence 99999999998753
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-12 Score=137.11 Aligned_cols=164 Identities=14% Similarity=0.141 Sum_probs=117.0
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
||+++||||+|.||+++++.|++.| .+|+++.|.... .+.+. +.++. ...++.++.+|++++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G---~~Vi~~~r~~~~---~~~~~--------~~~~~----~~~~~~~~~~D~~~~ 62 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEG---ANVVITGRTKEK---LEEAK--------LEIEQ----FPGQVLTVQMDVRNP 62 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHH--------HHHHh----cCCcEEEEEecCCCH
Confidence 5899999999999999999999988 688998886421 11111 11111 124788999999987
Q ss_pred cCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc----CCceEEEEe
Q psy11859 298 NLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM----KKLVAFIHF 359 (851)
Q Consensus 298 ~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~~~~~fV~v 359 (851)
+ ++..++ ..+|+|||+|+.... .+.++..+++|+.|+.++++++... ....++|++
T Consensus 63 ~------~~~~~~~~~~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~i 136 (252)
T PRK07677 63 E------DVQKMVEQIDEKFGRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINM 136 (252)
T ss_pred H------HHHHHHHHHHHHhCCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 6 554433 368999999985321 1345678999999999999998542 123689999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHH----hC--CCCEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY----KT--KLPVV 433 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~----~~--~l~~~ 433 (851)
||.++.... .. ...|+.||+..+.+++.. .. ++++.
T Consensus 137 sS~~~~~~~---------~~-----------------------------~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~ 178 (252)
T PRK07677 137 VATYAWDAG---------PG-----------------------------VIHSAAAKAGVLAMTRTLAVEWGRKYGIRVN 178 (252)
T ss_pred cChhhccCC---------CC-----------------------------CcchHHHHHHHHHHHHHHHHHhCcccCeEEE
Confidence 997543210 11 134999999999888753 22 78999
Q ss_pred EEecccccCC
Q psy11859 434 IVRPSIVLPS 443 (851)
Q Consensus 434 ivRp~~V~G~ 443 (851)
.++||.|..+
T Consensus 179 ~v~PG~v~~~ 188 (252)
T PRK07677 179 AIAPGPIERT 188 (252)
T ss_pred EEeecccccc
Confidence 9999998754
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.6e-12 Score=135.64 Aligned_cols=168 Identities=18% Similarity=0.167 Sum_probs=113.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
-.+++|+||||+|.||++++++|++.|. .+|+++.|..... ..+..++ +... ...+++++.+|++
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg--~~V~~~~r~~~~~-~~~~~~~---------l~~~---~~~~v~~~~~D~~ 70 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAP--ARVVLAALPDDPR-RDAAVAQ---------MKAA---GASSVEVIDFDAL 70 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCC--CeEEEEeCCcchh-HHHHHHH---------HHhc---CCCceEEEEecCC
Confidence 3578999999999999999999999853 5888988875420 1111111 1111 1236899999999
Q ss_pred CCcCCCCHHHHHH----Hh--cCccEEEEccccCCcch----h---HHHHHHHHHHHHHH----HHHHHHhcCCceEEEE
Q psy11859 296 QANLGIKDSDLLM----LQ--EEVSVVFNGAASLKLEA----E---LKENVAANTRGTQR----LLDIALKMKKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~----~~--~~vd~ViH~AA~~~~~~----~---~~~~~~~Nv~Gt~~----ll~~a~~~~~~~~fV~ 358 (851)
|++ ++.. +. .++|++||+||...... + ..+.+++|+.|+.. ++.++.+.+ ..++|+
T Consensus 71 ~~~------~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~-~~~iv~ 143 (253)
T PRK07904 71 DTD------SHPKVIDAAFAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQG-FGQIIA 143 (253)
T ss_pred ChH------HHHHHHHHHHhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcC-CceEEE
Confidence 876 4332 22 26999999998753211 1 12468999999887 455555553 679999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ 433 (851)
+||..+... ..+. ..|+.||+....+.+... . ++++.
T Consensus 144 isS~~g~~~---------~~~~-----------------------------~~Y~~sKaa~~~~~~~l~~el~~~~i~v~ 185 (253)
T PRK07904 144 MSSVAGERV---------RRSN-----------------------------FVYGSTKAGLDGFYLGLGEALREYGVRVL 185 (253)
T ss_pred EechhhcCC---------CCCC-----------------------------cchHHHHHHHHHHHHHHHHHHhhcCCEEE
Confidence 999654211 1111 239999999887655442 2 89999
Q ss_pred EEecccccCC
Q psy11859 434 IVRPSIVLPS 443 (851)
Q Consensus 434 ivRp~~V~G~ 443 (851)
+++||.|..+
T Consensus 186 ~v~Pg~v~t~ 195 (253)
T PRK07904 186 VVRPGQVRTR 195 (253)
T ss_pred EEeeCceecc
Confidence 9999998754
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.6e-12 Score=136.34 Aligned_cols=164 Identities=18% Similarity=0.254 Sum_probs=116.6
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++++|+||||+|+||..++++|++.| .+|++++|.... +.++ ...+ ....++.++.+|++|
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G---~~V~~~~r~~~~------~~~~-----~~~~-----~~~~~~~~~~~D~~d 64 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAG---ARLLLVGRNAEK------LEAL-----AARL-----PYPGRHRWVVADLTS 64 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEECCHHH------HHHH-----HHHH-----hcCCceEEEEccCCC
Confidence 67899999999999999999999998 689999986421 2111 1111 112478899999998
Q ss_pred CcCCCCHHHHHHHh------cCccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEee
Q psy11859 297 ANLGIKDSDLLMLQ------EEVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKM---KKLVAFIHFS 360 (851)
Q Consensus 297 ~~lgls~~~~~~~~------~~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~vS 360 (851)
++ ++..++ ..+|+|||+||..... +.+...+++|+.|+.++++++... .....+|++|
T Consensus 65 ~~------~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~is 138 (263)
T PRK09072 65 EA------GREAVLARAREMGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVG 138 (263)
T ss_pred HH------HHHHHHHHHHhcCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 76 444433 3689999999976431 345677899999999999998642 1245789888
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~iv 435 (851)
|.++... .|. ...|+.||+..+.++..++ . ++.++++
T Consensus 139 S~~~~~~----------~~~----------------------------~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v 180 (263)
T PRK09072 139 STFGSIG----------YPG----------------------------YASYCASKFALRGFSEALRRELADTGVRVLYL 180 (263)
T ss_pred ChhhCcC----------CCC----------------------------ccHHHHHHHHHHHHHHHHHHHhcccCcEEEEE
Confidence 8644211 111 1239999998877776554 2 7889999
Q ss_pred ecccccCC
Q psy11859 436 RPSIVLPS 443 (851)
Q Consensus 436 Rp~~V~G~ 443 (851)
.||.+..+
T Consensus 181 ~Pg~~~t~ 188 (263)
T PRK09072 181 APRATRTA 188 (263)
T ss_pred ecCccccc
Confidence 99877554
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-12 Score=138.96 Aligned_cols=166 Identities=14% Similarity=0.161 Sum_probs=118.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|.||..+++.|++.| .+|+++.|. .. ..+...+ +++ ...++.++.+|++
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G---~~vi~~~r~-~~--~~~~~~~---------~~~----~~~~~~~~~~Dl~ 64 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEG---AYVLAVDIA-EA--VSETVDK---------IKS----NGGKAKAYHVDIS 64 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCc-HH--HHHHHHH---------HHh----cCCeEEEEEeecC
Confidence 468999999999999999999999998 688888886 21 1111111 111 1236889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc----c----hhHHHHHHHHHHHHHHHHHHHHhcC--CceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL----E----AELKENVAANTRGTQRLLDIALKMK--KLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~----~----~~~~~~~~~Nv~Gt~~ll~~a~~~~--~~~~fV~ 358 (851)
+++ ++..+++ .+|++||+||.... . +.+...+++|+.|+..+++++...- .-.++|+
T Consensus 65 ~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~ 138 (272)
T PRK08589 65 DEQ------QVKDFASEIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQGGSIIN 138 (272)
T ss_pred CHH------HHHHHHHHHHHHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEE
Confidence 876 5544432 58999999997532 1 2456778999999988887765421 1158999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... .|. ...|+.||+..+.+++.++. ++.+.
T Consensus 139 isS~~~~~~----------~~~----------------------------~~~Y~asKaal~~l~~~la~e~~~~gI~v~ 180 (272)
T PRK08589 139 TSSFSGQAA----------DLY----------------------------RSGYNAAKGAVINFTKSIAIEYGRDGIRAN 180 (272)
T ss_pred eCchhhcCC----------CCC----------------------------CchHHHHHHHHHHHHHHHHHHhhhcCeEEE
Confidence 999644321 111 13499999999999887643 79999
Q ss_pred EEecccccCCC
Q psy11859 434 IVRPSIVLPSF 444 (851)
Q Consensus 434 ivRp~~V~G~~ 444 (851)
.+.||.|..+.
T Consensus 181 ~v~PG~v~T~~ 191 (272)
T PRK08589 181 AIAPGTIETPL 191 (272)
T ss_pred EEecCcccCch
Confidence 99999987653
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-12 Score=138.91 Aligned_cols=228 Identities=14% Similarity=0.096 Sum_probs=146.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++||||||||.||+.++++|++.| ..|.++.|.... +.++. . + ..++.++.+|++
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G---~~v~~~~r~~~~------~~~~~-----~----~----~~~~~~~~~D~~ 60 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALG---ARVAIGDLDEAL------AKETA-----A----E----LGLVVGGPLDVT 60 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEECCHHH------HHHHH-----H----H----hccceEEEccCC
Confidence 357899999999999999999999998 678888875422 11110 0 0 115778999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
+++ ++..++ .++|+|||+||..... +.+...+++|+.|+.++++++... .+..++|+
T Consensus 61 ~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~ 134 (273)
T PRK07825 61 DPA------SFAAFLDAVEADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVN 134 (273)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 876 443332 3689999999975431 245677999999999988777532 13568999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHH----hC-CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY----KT-KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~----~~-~l~~~ 433 (851)
+||..+... ..+. ..|+.||+..+.+.... .. +++++
T Consensus 135 isS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~~~~~l~~el~~~gi~v~ 176 (273)
T PRK07825 135 VASLAGKIP---------VPGM-----------------------------ATYCASKHAVVGFTDAARLELRGTGVHVS 176 (273)
T ss_pred EcCccccCC---------CCCC-----------------------------cchHHHHHHHHHHHHHHHHHhhccCcEEE
Confidence 999755321 1111 23999998777665443 23 89999
Q ss_pred EEecccccCCCCCCchhHhhhhcCCceEEEEcccCceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHHHHhhcCCC
Q psy11859 434 IVRPSIVLPSFQEPVPGWVDSLNGPVGVLVASGKGVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQLIYQYPL 513 (851)
Q Consensus 434 ivRp~~V~G~~~~p~p~~i~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~p~ 513 (851)
+++|+.|-.+... +. ... ... ..++..|+++.+.........
T Consensus 177 ~v~Pg~v~t~~~~----------~~------------------~~~--------~~~--~~~~~~~va~~~~~~l~~~~~ 218 (273)
T PRK07825 177 VVLPSFVNTELIA----------GT------------------GGA--------KGF--KNVEPEDVAAAIVGTVAKPRP 218 (273)
T ss_pred EEeCCcCcchhhc----------cc------------------ccc--------cCC--CCCCHHHHHHHHHHHHhCCCC
Confidence 9999887443210 00 000 001 246788888888877654221
Q ss_pred CCccccCcceeccchHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Q psy11859 514 EAGLWYPNGQIRSNRFWHYFFVIFTQILPAYLVDFIMVLIRQKT 557 (851)
Q Consensus 514 ~~~~~~p~~~~~~~~~~~~~~~~~~~~lpa~~~d~~~~l~G~~p 557 (851)
....|. ......++...+|..+.+.+.+.+|...
T Consensus 219 --~~~~~~--------~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 252 (273)
T PRK07825 219 --EVRVPR--------ALGPLAQAQRLLPRRVREALNRLLGGDR 252 (273)
T ss_pred --EEeccH--------HHHHHHHHHHhCcHHHHHHHHHHhcccc
Confidence 111121 1223344456678877777777666653
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.7e-12 Score=137.21 Aligned_cols=163 Identities=19% Similarity=0.185 Sum_probs=118.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++||||||||.||+++++.|++.| .+|++++|.... .+.+. ++ ...++.++.+|++
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~------------~~---~~~~~~~~~~Dl~ 62 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAG---ARVAIVDIDADN---GAAVA------------AS---LGERARFIATDIT 62 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHH------------HH---hCCeeEEEEecCC
Confidence 468999999999999999999999998 688898886432 11111 11 1236889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc------chhHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEee
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL------EAELKENVAANTRGTQRLLDIALKM--KKLVAFIHFS 360 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~------~~~~~~~~~~Nv~Gt~~ll~~a~~~--~~~~~fV~vS 360 (851)
+++ ++..+++ .+|+|||+|+.... .+.+...+++|+.|+..+++++... ..-.++|++|
T Consensus 63 ~~~------~~~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~is 136 (261)
T PRK08265 63 DDA------AIERAVATVVARFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFT 136 (261)
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 876 5554443 58999999996421 2456678999999999999887642 1235799999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~iv 435 (851)
|..+... .|. ...|+.||+..+.+++..+. ++.+.+|
T Consensus 137 S~~~~~~----------~~~----------------------------~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v 178 (261)
T PRK08265 137 SISAKFA----------QTG----------------------------RWLYPASKAAIRQLTRSMAMDLAPDGIRVNSV 178 (261)
T ss_pred chhhccC----------CCC----------------------------CchhHHHHHHHHHHHHHHHHHhcccCEEEEEE
Confidence 8643211 111 12399999999988876542 8999999
Q ss_pred ecccccCC
Q psy11859 436 RPSIVLPS 443 (851)
Q Consensus 436 Rp~~V~G~ 443 (851)
+||.|-.+
T Consensus 179 ~PG~~~t~ 186 (261)
T PRK08265 179 SPGWTWSR 186 (261)
T ss_pred ccCCccCh
Confidence 99987655
|
|
| >KOG3608|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-14 Score=148.43 Aligned_cols=155 Identities=21% Similarity=0.306 Sum_probs=125.9
Q ss_pred CCCCCCCceeeeeccceeecCCccccchhhhhhhccccc--CCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 676 NGQIRSNRFWHYFFVIFTQILPAYLVDFIMVLIRQKTFE--NLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 676 ~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~h--~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.+.|.+|.+.|++++...|..|+..|+++..|--|.+.. ....+|+| ..|.|.|.+...|+.|+..|. ..|+|+
T Consensus 192 k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC--~~C~KrFaTeklL~~Hv~rHv--n~ykCp 267 (467)
T KOG3608|consen 192 KYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQC--AQCFKRFATEKLLKSHVVRHV--NCYKCP 267 (467)
T ss_pred HHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHH--HHHHHHHhHHHHHHHHHHHhh--hccccc
Confidence 677889999999999999999999999999999885543 34579999 889999999999999999986 469998
Q ss_pred ccccCccccCchhHHHhhh-hcCCCCCccCCCCCCccccccccCCccc------------ccCcccccccccCCCCCCcc
Q psy11859 754 WQDCKWQFSRSDELSRHRR-SHFGIKPYPCTLCVKKSLLAILNCPHEA------------ECTPTFKHRAEKTSTPGPSM 820 (851)
Q Consensus 754 ~~~C~k~F~~~~~L~~H~r-~H~gekp~~C~~Cgk~f~~~~~~~~H~~------------~C~k~f~~~~~~~~~~~pf~ 820 (851)
.|.-.....++|.+|++ .|...|||+|+.|.+.+...+.+..|.. .|..+|+.
T Consensus 268 --lCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~r~------------ 333 (467)
T KOG3608|consen 268 --LCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSVRT------------ 333 (467)
T ss_pred --ccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhccccceecCCCCCcHHHHH------------
Confidence 89999999999999988 4788999999999998876655544432 24334433
Q ss_pred ChHHHHHHHHh-hcCCc--chhhhhhHHhhhc
Q psy11859 821 CKRHLAKHLKV-HERQK--YKMMMKSMRKMKN 849 (851)
Q Consensus 821 Ck~~L~~H~r~-Htgek--~~~C~~c~~~f~~ 849 (851)
...+++|++- |.|.. +|.|..|.|.|+.
T Consensus 334 -~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~ 364 (467)
T KOG3608|consen 334 -YTQMRRHFLEVHEGNNPILYACHCCDRFFTS 364 (467)
T ss_pred -HHHHHHHHHHhccCCCCCceeeecchhhhcc
Confidence 3478999774 55665 9999999999975
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.4e-12 Score=137.69 Aligned_cols=164 Identities=21% Similarity=0.231 Sum_probs=117.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++|+||||+|+||++++++|++.| .+|+++.|... +++++ .+. ...++.++.+|++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G---~~V~~~~r~~~------~~~~l---------~~~---~~~~~~~~~~D~~ 61 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEG---ARVAVLDKSAA------GLQEL---------EAA---HGDAVVGVEGDVR 61 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH---------Hhh---cCCceEEEEeccC
Confidence 468999999999999999999999998 67888887542 12221 111 1236888999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCC----c---c-----hhHHHHHHHHHHHHHHHHHHHHhcC--Cce
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLK----L---E-----AELKENVAANTRGTQRLLDIALKMK--KLV 354 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~----~---~-----~~~~~~~~~Nv~Gt~~ll~~a~~~~--~~~ 354 (851)
+++ +...++ .++|++||+||... + + +.++..+++|+.|+..+++++...- .-.
T Consensus 62 ~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g 135 (262)
T TIGR03325 62 SLD------DHKEAVARCVAAFGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRG 135 (262)
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCC
Confidence 875 444333 36899999998632 1 1 1356789999999999999997531 114
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----CC
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----KL 430 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----~l 430 (851)
++|++||..+.. +.+. ...|+.||+..+.+++.++. .+
T Consensus 136 ~iv~~sS~~~~~----------~~~~----------------------------~~~Y~~sKaa~~~l~~~la~e~~~~i 177 (262)
T TIGR03325 136 SVIFTISNAGFY----------PNGG----------------------------GPLYTAAKHAVVGLVKELAFELAPYV 177 (262)
T ss_pred CEEEEeccceec----------CCCC----------------------------CchhHHHHHHHHHHHHHHHHhhccCe
Confidence 688888854421 1111 12499999999999987754 57
Q ss_pred CEEEEecccccCCC
Q psy11859 431 PVVIVRPSIVLPSF 444 (851)
Q Consensus 431 ~~~ivRp~~V~G~~ 444 (851)
.+..+.||.|..+.
T Consensus 178 rvn~i~PG~i~t~~ 191 (262)
T TIGR03325 178 RVNGVAPGGMSSDL 191 (262)
T ss_pred EEEEEecCCCcCCC
Confidence 89999999987653
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-12 Score=137.03 Aligned_cols=158 Identities=21% Similarity=0.196 Sum_probs=114.2
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+||||||||+||++++++|++.| .+|.+++|+.... +. . ....++.++.+|+++++
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G---~~v~~~~r~~~~~-----~~------------~---~~~~~~~~~~~D~~~~~ 58 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPG---IAVLGVARSRHPS-----LA------------A---AAGERLAEVELDLSDAA 58 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCC---CEEEEEecCcchh-----hh------------h---ccCCeEEEEEeccCCHH
Confidence 589999999999999999999988 6788888865321 00 0 11236889999999876
Q ss_pred CCCCHHHHHHHh-----------cCccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEE
Q psy11859 299 LGIKDSDLLMLQ-----------EEVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKM---KKLVAF 356 (851)
Q Consensus 299 lgls~~~~~~~~-----------~~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~f 356 (851)
++..++ ..+|+|||+|+.... .+.+...+++|+.|+..+++.+.+. ....++
T Consensus 59 ------~~~~~~~~~~~~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~i 132 (243)
T PRK07023 59 ------AAAAWLAGDLLAAFVDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRI 132 (243)
T ss_pred ------HHHHHHHHHHHHHhccCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEE
Confidence 444421 157999999997543 1345678999999977776666532 124689
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----CCCE
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----KLPV 432 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----~l~~ 432 (851)
|++||..+... ..+. .+|+.||+..|.++..++. ++.+
T Consensus 133 v~isS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~~~~~~~~~i~v 174 (243)
T PRK07023 133 LHISSGAARNA---------YAGW-----------------------------SVYCATKAALDHHARAVALDANRALRI 174 (243)
T ss_pred EEEeChhhcCC---------CCCc-----------------------------hHHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 99999644321 1112 3499999999999987652 8999
Q ss_pred EEEecccccCC
Q psy11859 433 VIVRPSIVLPS 443 (851)
Q Consensus 433 ~ivRp~~V~G~ 443 (851)
.+++||.+-.+
T Consensus 175 ~~v~pg~~~t~ 185 (243)
T PRK07023 175 VSLAPGVVDTG 185 (243)
T ss_pred EEecCCccccH
Confidence 99999987543
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.6e-12 Score=134.71 Aligned_cols=168 Identities=17% Similarity=0.219 Sum_probs=113.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|.||+++++.|++.| ..|+++.|.... ..+.+. +.+.. ...++.++.+|++
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G---~~vvi~~~~~~~--~~~~~~--------~~l~~----~~~~~~~~~~Dl~ 67 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEK---AKVVINYRSDEE--EANDVA--------EEIKK----AGGEAIAVKGDVT 67 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCCHH--HHHHHH--------HHHHH----cCCeEEEEEecCC
Confidence 578999999999999999999999998 677777774321 111111 11111 1236778999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHH----HhcCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIA----LKMKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a----~~~~~~~~fV 357 (851)
++. ++..+++ .+|+|||+|+..... +.+...+++|+.|+..+++.+ .+.+.-.++|
T Consensus 68 ~~~------~i~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv 141 (261)
T PRK08936 68 VES------DVVNLIQTAVKEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNII 141 (261)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 876 5544432 589999999964321 345677999999887665544 3332235899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHH----hC-CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY----KT-KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~----~~-~l~~ 432 (851)
++||...... ..+. ..|+.||+..+.+.+.. .. ++.+
T Consensus 142 ~~sS~~~~~~---------~~~~-----------------------------~~Y~~sKaa~~~~~~~la~e~~~~gi~v 183 (261)
T PRK08936 142 NMSSVHEQIP---------WPLF-----------------------------VHYAASKGGVKLMTETLAMEYAPKGIRV 183 (261)
T ss_pred EEccccccCC---------CCCC-----------------------------cccHHHHHHHHHHHHHHHHHHhhcCeEE
Confidence 9999533211 1111 34999997776666554 33 8999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
.+++||.|-.+.
T Consensus 184 ~~v~pg~v~t~~ 195 (261)
T PRK08936 184 NNIGPGAINTPI 195 (261)
T ss_pred EEEEECcCCCCc
Confidence 999999998774
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.4e-12 Score=136.90 Aligned_cols=164 Identities=16% Similarity=0.236 Sum_probs=118.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|.||+.++++|++.| .+|.++.|... +...+ .+. ....++.++.+|++
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G---~~vv~~~~~~~-----~~~~~--------~~~----~~~~~~~~~~~Dl~ 65 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAG---ADIVGVGVAEA-----PETQA--------QVE----ALGRKFHFITADLI 65 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEecCchH-----HHHHH--------HHH----HcCCeEEEEEeCCC
Confidence 468999999999999999999999998 67887777431 11111 111 11236889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc----CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM----KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~~~~~fV 357 (851)
+++ ++..+++ ++|++||+|+.... .+.++..+++|+.|+..+.+++... +.-.++|
T Consensus 66 ~~~------~~~~~~~~~~~~~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii 139 (251)
T PRK12481 66 QQK------DIDSIVSQAVEVMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKII 139 (251)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 886 5555543 58999999997542 2456778999999999998887542 1125899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..++... ... ..|+.||+..+.+++.++. ++.+
T Consensus 140 ~isS~~~~~~~---------~~~-----------------------------~~Y~asK~a~~~l~~~la~e~~~~girv 181 (251)
T PRK12481 140 NIASMLSFQGG---------IRV-----------------------------PSYTASKSAVMGLTRALATELSQYNINV 181 (251)
T ss_pred EeCChhhcCCC---------CCC-----------------------------cchHHHHHHHHHHHHHHHHHHhhcCeEE
Confidence 99997553221 011 2399999999988876543 8999
Q ss_pred EEEecccccCC
Q psy11859 433 VIVRPSIVLPS 443 (851)
Q Consensus 433 ~ivRp~~V~G~ 443 (851)
..++||.|-.+
T Consensus 182 n~v~PG~v~t~ 192 (251)
T PRK12481 182 NAIAPGYMATD 192 (251)
T ss_pred EEEecCCCccC
Confidence 99999988654
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-12 Score=134.08 Aligned_cols=167 Identities=14% Similarity=0.154 Sum_probs=116.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++||||||+|+||+++++.|++.| .+|+++.|.... .+.+. ..+. + ..+++++.+|++
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G---~~V~~~~r~~~~---~~~~~--------~~~~----~-~~~~~~~~~Dl~ 63 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEG---AQVCINSRNENK---LKRMK--------KTLS----K-YGNIHYVVGDVS 63 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHH--------HHHH----h-cCCeEEEECCCC
Confidence 357899999999999999999999998 688999886422 11111 1111 1 126889999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-----chhHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEeeee
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-----EAELKENVAANTRGTQRLLDIALKMK-KLVAFIHFSTA 362 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-----~~~~~~~~~~Nv~Gt~~ll~~a~~~~-~~~~fV~vSTa 362 (851)
+++ ++..++ ..+|+|||+|+.... .+.+...+++|+.|+..+++.+..+- .-.+||++||.
T Consensus 64 ~~~------~~~~~~~~~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~ 137 (238)
T PRK05786 64 STE------SARNVIEKAAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSM 137 (238)
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 876 444433 357999999985422 13345678999999999888886531 12468888885
Q ss_pred eeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEec
Q psy11859 363 FCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVRP 437 (851)
Q Consensus 363 ~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivRp 437 (851)
.+... ...+. ..|+.||+..+.+++.+.. +++++++||
T Consensus 138 ~~~~~--------~~~~~-----------------------------~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~p 180 (238)
T PRK05786 138 SGIYK--------ASPDQ-----------------------------LSYAVAKAGLAKAVEILASELLGRGIRVNGIAP 180 (238)
T ss_pred hhccc--------CCCCc-----------------------------hHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEec
Confidence 33110 00111 2399999999887766542 899999999
Q ss_pred ccccCCC
Q psy11859 438 SIVLPSF 444 (851)
Q Consensus 438 ~~V~G~~ 444 (851)
+.|+++.
T Consensus 181 g~v~~~~ 187 (238)
T PRK05786 181 TTISGDF 187 (238)
T ss_pred CccCCCC
Confidence 9999874
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.3e-12 Score=135.67 Aligned_cols=164 Identities=20% Similarity=0.189 Sum_probs=115.1
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+++||||+|+||.+|++.|++.| .+|+++.|... ++.++ ...+. ....++.++.+|++|++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G---~~v~~~~r~~~------~~~~~-----~~~l~----~~~~~~~~~~~Dl~~~~ 62 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDG---FAVAVADLNEE------TAKET-----AKEIN----QAGGKAVAYKLDVSDKD 62 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH-----HHHHH----hcCCeEEEEEcCCCCHH
Confidence 579999999999999999999988 67888888632 11111 11111 11236889999999886
Q ss_pred CCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh----cCCceEEEEee
Q psy11859 299 LGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK----MKKLVAFIHFS 360 (851)
Q Consensus 299 lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~----~~~~~~fV~vS 360 (851)
++..++ ..+|+|||+|+.... .+.++..+++|+.|+..+++++.. .+.-.++|++|
T Consensus 63 ------~i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s 136 (254)
T TIGR02415 63 ------QVFSAIDQAAEKFGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA 136 (254)
T ss_pred ------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 554443 357999999987532 134567899999999988777653 22236899999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~iv 435 (851)
|..+.... ... +.|+.+|+..|.+++..+. ++.+.++
T Consensus 137 S~~~~~~~---------~~~-----------------------------~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v 178 (254)
T TIGR02415 137 SIAGHEGN---------PIL-----------------------------SAYSSTKFAVRGLTQTAAQELAPKGITVNAY 178 (254)
T ss_pred chhhcCCC---------CCC-----------------------------cchHHHHHHHHHHHHHHHHHhcccCeEEEEE
Confidence 85432110 111 3499999999999876532 7899999
Q ss_pred ecccccCCC
Q psy11859 436 RPSIVLPSF 444 (851)
Q Consensus 436 Rp~~V~G~~ 444 (851)
+|+.+..+.
T Consensus 179 ~Pg~i~t~~ 187 (254)
T TIGR02415 179 CPGIVKTPM 187 (254)
T ss_pred ecCcccChh
Confidence 999886553
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.8e-12 Score=124.20 Aligned_cols=164 Identities=18% Similarity=0.234 Sum_probs=116.4
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
++|+||||+|+||.+++++|++.+. ..|+++.|........... ...+++ ...++.++.+|+++++
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~--~~v~~~~r~~~~~~~~~~~--------~~~~~~----~~~~~~~~~~D~~~~~ 66 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGA--RHLVLLSRSGPDAPGAAEL--------LAELEA----LGAEVTVVACDVADRA 66 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhC--CeEEEEeCCCCCCccHHHH--------HHHHHh----cCCeEEEEECCCCCHH
Confidence 4799999999999999999998873 3677888865432111100 111111 1236788999999875
Q ss_pred CCCCHHHHHHHh-------cCccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeee
Q psy11859 299 LGIKDSDLLMLQ-------EEVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFC 364 (851)
Q Consensus 299 lgls~~~~~~~~-------~~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~ 364 (851)
++..++ ..+|+|||+|+..... +.++..+++|+.|+.++++++.+. +..++|++||..+
T Consensus 67 ------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~ii~~ss~~~ 139 (180)
T smart00822 67 ------ALAAALAAIPARLGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDL-PLDFFVLFSSVAG 139 (180)
T ss_pred ------HHHHHHHHHHHHcCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccC-CcceEEEEccHHH
Confidence 444443 3479999999965321 345678999999999999999765 4788999998643
Q ss_pred eCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-CCCEEEEeccccc
Q psy11859 365 HPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-KLPVVIVRPSIVL 441 (851)
Q Consensus 365 ~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-~l~~~ivRp~~V~ 441 (851)
.-. .+. ...|+.+|...+.++..... +++++++.||.+-
T Consensus 140 ~~~----------~~~----------------------------~~~y~~sk~~~~~~~~~~~~~~~~~~~~~~g~~~ 179 (180)
T smart00822 140 VLG----------NPG----------------------------QANYAAANAFLDALAAHRRARGLPATSINWGAWA 179 (180)
T ss_pred hcC----------CCC----------------------------chhhHHHHHHHHHHHHHHHhcCCceEEEeecccc
Confidence 211 111 13499999999999976655 9999999998764
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-12 Score=135.30 Aligned_cols=211 Identities=20% Similarity=0.264 Sum_probs=132.5
Q ss_pred EEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcCC
Q psy11859 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLG 300 (851)
Q Consensus 221 VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lg 300 (851)
|+||||||.+|+.+++.|++.+ ..|.++.|..+. .+... |+. ..++++.+|+.|++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~---~~V~~l~R~~~~----~~~~~---------l~~------~g~~vv~~d~~~~~-- 56 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG---FSVRALVRDPSS----DRAQQ---------LQA------LGAEVVEADYDDPE-- 56 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---GCEEEEESSSHH----HHHHH---------HHH------TTTEEEES-TT-HH--
T ss_pred CEEECCccHHHHHHHHHHHhCC---CCcEEEEeccch----hhhhh---------hhc------ccceEeecccCCHH--
Confidence 7999999999999999999966 789999998732 12211 111 26788999999876
Q ss_pred CCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccCCCCC
Q psy11859 301 IKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPV 380 (851)
Q Consensus 301 ls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~ 380 (851)
.+..+++++|+||.+-+..+ . .-+....+++++|++.+ |++||+.|....+.. .....|.
T Consensus 57 ----~l~~al~g~d~v~~~~~~~~-~--------~~~~~~~~li~Aa~~ag-Vk~~v~ss~~~~~~~------~~~~~p~ 116 (233)
T PF05368_consen 57 ----SLVAALKGVDAVFSVTPPSH-P--------SELEQQKNLIDAAKAAG-VKHFVPSSFGADYDE------SSGSEPE 116 (233)
T ss_dssp ----HHHHHHTTCSEEEEESSCSC-C--------CHHHHHHHHHHHHHHHT--SEEEESEESSGTTT------TTTSTTH
T ss_pred ----HHHHHHcCCceEEeecCcch-h--------hhhhhhhhHHHhhhccc-cceEEEEEecccccc------ccccccc
Confidence 89999999999998887654 1 12345578999999997 999997665322210 0001111
Q ss_pred CHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhHhhhhcCCc-
Q psy11859 381 SPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDSLNGPV- 459 (851)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~i~~~~~~~- 459 (851)
. ..-..|...|..+++. +++.+++|||.-+...-.+...+.+ +.+..
T Consensus 117 ~-----------------------------~~~~~k~~ie~~l~~~--~i~~t~i~~g~f~e~~~~~~~~~~~-~~~~~~ 164 (233)
T PF05368_consen 117 I-----------------------------PHFDQKAEIEEYLRES--GIPYTIIRPGFFMENLLPPFAPVVD-IKKSKD 164 (233)
T ss_dssp H-----------------------------HHHHHHHHHHHHHHHC--TSEBEEEEE-EEHHHHHTTTHHTTC-SCCTSS
T ss_pred c-----------------------------hhhhhhhhhhhhhhhc--cccceeccccchhhhhhhhhccccc-ccccce
Confidence 1 1345788889888765 8999999999866543222222111 22221
Q ss_pred eEEEE-cccCceeEE-------------EeecCCC-CccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 460 GVLVA-SGKGVVRSM-------------ILNDLST-ETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 460 ~~~~~-~g~~v~~~~-------------~~~~~~~-~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
.+.+. .+..-...+ +..+... .+..+.+++ ..+|+.|+++.+.+.+|+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~Dvg~~va~il~~p~~~~~~~~~~~~~---~~~t~~eia~~~s~~~G~ 227 (233)
T PF05368_consen 165 VVTLPGPGNQKAVPVTDTRDVGRAVAAILLDPEKHNNGKTIFLAG---ETLTYNEIAAILSKVLGK 227 (233)
T ss_dssp EEEEETTSTSEEEEEEHHHHHHHHHHHHHHSGGGTTEEEEEEEGG---GEEEHHHHHHHHHHHHTS
T ss_pred EEEEccCCCccccccccHHHHHHHHHHHHcChHHhcCCEEEEeCC---CCCCHHHHHHHHHHHHCC
Confidence 22222 222111111 1111122 456676654 368999999999999886
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-12 Score=140.38 Aligned_cols=177 Identities=16% Similarity=0.197 Sum_probs=120.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+|+||||||+||.+++++|++.| .+|+++.|.... ..+... .+....+. .++.++.+|++
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G---~~Vil~~R~~~~--~~~~~~---------~l~~~~~~--~~v~~~~~Dl~ 75 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAG---AEVILPVRNRAK--GEAAVA---------AIRTAVPD--AKLSLRALDLS 75 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHH--HHHHHH---------HHHHhCCC--CceEEEEecCC
Confidence 578999999999999999999999998 789999886432 111111 22222221 36889999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCcc------hhHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEee
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKLE------AELKENVAANTRGTQRLLDIALKM--KKLVAFIHFS 360 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~~------~~~~~~~~~Nv~Gt~~ll~~a~~~--~~~~~fV~vS 360 (851)
+.+ ++..+. ..+|++||+||..... +.++..+.+|+.|...+.+++... ..-.++|++|
T Consensus 76 d~~------sv~~~~~~~~~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vs 149 (313)
T PRK05854 76 SLA------SVAALGEQLRAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQS 149 (313)
T ss_pred CHH------HHHHHHHHHHHhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 876 555443 2589999999975421 346678999999988887776521 1135789999
Q ss_pred eeeeeCCCc---ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-------CC
Q psy11859 361 TAFCHPDQK---VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-------KL 430 (851)
Q Consensus 361 Ta~~~~~~~---~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-------~l 430 (851)
|........ .+.+.. +..+ -..|+.||+..+.+..+++. ++
T Consensus 150 S~~~~~~~~~~~~~~~~~---~~~~--------------------------~~~Y~~SK~a~~~~~~~la~~~~~~~~gI 200 (313)
T PRK05854 150 SIAARRGAINWDDLNWER---SYAG--------------------------MRAYSQSKIAVGLFALELDRRSRAAGWGI 200 (313)
T ss_pred chhhcCCCcCcccccccc---cCcc--------------------------hhhhHHHHHHHHHHHHHHHHHhhcCCCCe
Confidence 865432111 111111 1111 14599999999998876642 68
Q ss_pred CEEEEecccccCC
Q psy11859 431 PVVIVRPSIVLPS 443 (851)
Q Consensus 431 ~~~ivRp~~V~G~ 443 (851)
.+..+-||.|-.+
T Consensus 201 ~v~~v~PG~v~T~ 213 (313)
T PRK05854 201 TSNLAHPGVAPTN 213 (313)
T ss_pred EEEEEecceeccC
Confidence 8999999998654
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.5e-12 Score=133.41 Aligned_cols=169 Identities=14% Similarity=0.121 Sum_probs=116.1
Q ss_pred EEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcCC
Q psy11859 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLG 300 (851)
Q Consensus 221 VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lg 300 (851)
||||||+|+||.++++.|++.| .+|+++.|.... +..++ .+.++. ...++.++.+|+++++
T Consensus 1 vlItGas~giG~~~a~~l~~~G---~~v~~~~~~~~~-----~~~~~-----~~~l~~----~~~~~~~~~~Dl~~~~-- 61 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADG---FEICVHYHSGRS-----DAESV-----VSAIQA----QGGNARLLQFDVADRV-- 61 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCCHH-----HHHHH-----HHHHHH----cCCeEEEEEccCCCHH--
Confidence 6999999999999999999998 678888775422 11111 111211 1246889999999886
Q ss_pred CCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHH----hcCCceEEEEeeee
Q psy11859 301 IKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIAL----KMKKLVAFIHFSTA 362 (851)
Q Consensus 301 ls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV~vSTa 362 (851)
++..++ ..+|++||+|+.... .+.+...+++|+.|+.++++++. +.....+||++||.
T Consensus 62 ----~~~~~~~~~~~~~~~i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~ 137 (239)
T TIGR01831 62 ----ACRTLLEADIAEHGAYYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASV 137 (239)
T ss_pred ----HHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcch
Confidence 444433 257999999986432 24566789999999999988763 11234689999995
Q ss_pred eeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEEEEec
Q psy11859 363 FCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVVIVRP 437 (851)
Q Consensus 363 ~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ivRp 437 (851)
.+... .|. ...|+.||+..+.+.+..+ . +++++.++|
T Consensus 138 ~~~~~----------~~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~P 179 (239)
T TIGR01831 138 SGVMG----------NRG----------------------------QVNYSAAKAGLIGATKALAVELAKRKITVNCIAP 179 (239)
T ss_pred hhccC----------CCC----------------------------CcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEE
Confidence 43211 111 1239999998887776553 2 899999999
Q ss_pred ccccCCCCCCchh
Q psy11859 438 SIVLPSFQEPVPG 450 (851)
Q Consensus 438 ~~V~G~~~~p~p~ 450 (851)
|.|.++.....+.
T Consensus 180 g~v~t~~~~~~~~ 192 (239)
T TIGR01831 180 GLIDTEMLAEVEH 192 (239)
T ss_pred ccCccccchhhhH
Confidence 9998775444443
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.1e-12 Score=140.08 Aligned_cols=165 Identities=19% Similarity=0.266 Sum_probs=116.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++|+||||+|+||+.+++.|++.| .+|+++.|.... ++++ .+.++. ...++.++.+|++
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G---~~Vvl~~R~~~~------l~~~-----~~~l~~----~g~~~~~v~~Dv~ 67 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRG---AKVVLLARGEEG------LEAL-----AAEIRA----AGGEALAVVADVA 67 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCHHH------HHHH-----HHHHHH----cCCcEEEEEecCC
Confidence 467899999999999999999999998 688888886422 2111 111111 1236889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHH----hcCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIAL----KMKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV 357 (851)
|++ ++..+++ .+|+|||+|+...+. +.++..+++|+.|+.++.+++. +. +..+||
T Consensus 68 d~~------~v~~~~~~~~~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~-~~g~iV 140 (334)
T PRK07109 68 DAE------AVQAAADRAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPR-DRGAII 140 (334)
T ss_pred CHH------HHHHHHHHHHHHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEE
Confidence 986 5555432 689999999965321 3455678899888777655554 33 246899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh-------CCC
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK-------TKL 430 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~-------~~l 430 (851)
++||..++... |. ...|+.||+..+.+....+ .++
T Consensus 141 ~isS~~~~~~~----------~~----------------------------~~~Y~asK~a~~~~~~~l~~el~~~~~~I 182 (334)
T PRK07109 141 QVGSALAYRSI----------PL----------------------------QSAYCAAKHAIRGFTDSLRCELLHDGSPV 182 (334)
T ss_pred EeCChhhccCC----------Cc----------------------------chHHHHHHHHHHHHHHHHHHHHhhcCCCe
Confidence 99997665321 11 1249999999887776542 158
Q ss_pred CEEEEecccccCC
Q psy11859 431 PVVIVRPSIVLPS 443 (851)
Q Consensus 431 ~~~ivRp~~V~G~ 443 (851)
.+++++|+.|-.|
T Consensus 183 ~v~~v~Pg~v~T~ 195 (334)
T PRK07109 183 SVTMVQPPAVNTP 195 (334)
T ss_pred EEEEEeCCCccCc
Confidence 8999999988655
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.2e-12 Score=137.78 Aligned_cols=163 Identities=18% Similarity=0.139 Sum_probs=115.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+++||||+|+||++++++|++.| .+|++.++.... ..+.+. +.++. ...++.++.+|++
T Consensus 10 l~~k~~lVTGas~gIG~~ia~~L~~~G---a~Vv~~~~~~~~--~~~~~~--------~~i~~----~g~~~~~~~~Dv~ 72 (306)
T PRK07792 10 LSGKVAVVTGAAAGLGRAEALGLARLG---ATVVVNDVASAL--DASDVL--------DEIRA----AGAKAVAVAGDIS 72 (306)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEecCCchh--HHHHHH--------HHHHh----cCCeEEEEeCCCC
Confidence 678999999999999999999999998 678887775322 111111 11211 1246889999999
Q ss_pred CCcCCCCHHHHHHHh------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhcC----------C
Q psy11859 296 QANLGIKDSDLLMLQ------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKMK----------K 352 (851)
Q Consensus 296 ~~~lgls~~~~~~~~------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~----------~ 352 (851)
+++ +...++ .++|+|||+||.... .+.+...+++|+.|+.++++++...- .
T Consensus 73 d~~------~~~~~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~ 146 (306)
T PRK07792 73 QRA------TADELVATAVGLGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPV 146 (306)
T ss_pred CHH------HHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCC
Confidence 876 454443 368999999997643 23566789999999999999875310 0
Q ss_pred ceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----
Q psy11859 353 LVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT---- 428 (851)
Q Consensus 353 ~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~---- 428 (851)
-.++|++||..+... .... ..|+.||+..+.+++.++.
T Consensus 147 ~g~iv~isS~~~~~~---------~~~~-----------------------------~~Y~asKaal~~l~~~la~e~~~ 188 (306)
T PRK07792 147 YGRIVNTSSEAGLVG---------PVGQ-----------------------------ANYGAAKAGITALTLSAARALGR 188 (306)
T ss_pred CcEEEEECCcccccC---------CCCC-----------------------------chHHHHHHHHHHHHHHHHHHhhh
Confidence 137899998644211 0111 2499999999998876543
Q ss_pred -CCCEEEEeccc
Q psy11859 429 -KLPVVIVRPSI 439 (851)
Q Consensus 429 -~l~~~ivRp~~ 439 (851)
++.+..+.|+.
T Consensus 189 ~gI~vn~i~Pg~ 200 (306)
T PRK07792 189 YGVRANAICPRA 200 (306)
T ss_pred cCeEEEEECCCC
Confidence 78999999973
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.5e-12 Score=129.96 Aligned_cols=160 Identities=14% Similarity=0.153 Sum_probs=115.1
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
++|+||||+|+||+++++.|++.| .+|.+++|.... .+++. . ..++++.+|+++.+
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G---~~v~~~~r~~~~---~~~~~------------~------~~~~~~~~D~~~~~ 57 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADG---WRVIATARDAAA---LAALQ------------A------LGAEALALDVADPA 57 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCC---CEEEEEECCHHH---HHHHH------------h------ccceEEEecCCCHH
Confidence 589999999999999999999987 678888886422 11111 1 13568899999986
Q ss_pred CCCCHHHHHHHh---c--CccEEEEccccCCc---------chhHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEeeee
Q psy11859 299 LGIKDSDLLMLQ---E--EVSVVFNGAASLKL---------EAELKENVAANTRGTQRLLDIALKM--KKLVAFIHFSTA 362 (851)
Q Consensus 299 lgls~~~~~~~~---~--~vd~ViH~AA~~~~---------~~~~~~~~~~Nv~Gt~~ll~~a~~~--~~~~~fV~vSTa 362 (851)
+++.+. . ++|+|||+|+.... .+.++..+++|+.|+.++++++... ..-.++|++||.
T Consensus 58 ------~v~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~ 131 (222)
T PRK06953 58 ------SVAGLAWKLDGEALDAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSR 131 (222)
T ss_pred ------HHHHHHHHhcCCCCCEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCc
Confidence 444432 2 58999999997521 2346678999999999999998752 112468888885
Q ss_pred ee-eCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC---CCCEEEEecc
Q psy11859 363 FC-HPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT---KLPVVIVRPS 438 (851)
Q Consensus 363 ~~-~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~---~l~~~ivRp~ 438 (851)
.+ .+... ..+. ..|+.+|+..+.+++.++. +++++.++||
T Consensus 132 ~~~~~~~~-------~~~~-----------------------------~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg 175 (222)
T PRK06953 132 MGSIGDAT-------GTTG-----------------------------WLYRASKAALNDALRAASLQARHATCIALHPG 175 (222)
T ss_pred cccccccc-------CCCc-----------------------------cccHHhHHHHHHHHHHHhhhccCcEEEEECCC
Confidence 33 22110 0011 2399999999999987754 7889999999
Q ss_pred cccCCC
Q psy11859 439 IVLPSF 444 (851)
Q Consensus 439 ~V~G~~ 444 (851)
.|..+.
T Consensus 176 ~i~t~~ 181 (222)
T PRK06953 176 WVRTDM 181 (222)
T ss_pred eeecCC
Confidence 988664
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.1e-12 Score=135.94 Aligned_cols=163 Identities=21% Similarity=0.230 Sum_probs=116.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||.++++.|++.| .+|+++.|.... +.++ .++ ...++.++.+|++
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~------~~~~---------~~~---~~~~~~~~~~D~~ 62 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEG---ARVAVLERSAEK------LASL---------RQR---FGDHVLVVEGDVT 62 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHH------HHHH---------HHH---hCCcceEEEccCC
Confidence 468999999999999999999999998 678888886422 1111 111 1236788999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-----c---h----hHHHHHHHHHHHHHHHHHHHHhcC--Cce
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-----E---A----ELKENVAANTRGTQRLLDIALKMK--KLV 354 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-----~---~----~~~~~~~~Nv~Gt~~ll~~a~~~~--~~~ 354 (851)
+++ ++..++ ..+|++||+|+.... + + .++..+++|+.|+..+++++...- .-.
T Consensus 63 ~~~------~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g 136 (263)
T PRK06200 63 SYA------DNQRAVDQTVDAFGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGG 136 (263)
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCC
Confidence 876 444443 368999999996431 1 1 145668899999999998886421 124
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----CC
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----KL 430 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----~l 430 (851)
++|++||..++... .+. ..|+.||+..+.+++.++. ++
T Consensus 137 ~iv~~sS~~~~~~~---------~~~-----------------------------~~Y~~sK~a~~~~~~~la~el~~~I 178 (263)
T PRK06200 137 SMIFTLSNSSFYPG---------GGG-----------------------------PLYTASKHAVVGLVRQLAYELAPKI 178 (263)
T ss_pred EEEEECChhhcCCC---------CCC-----------------------------chhHHHHHHHHHHHHHHHHHHhcCc
Confidence 79999986543211 111 2499999999998877654 68
Q ss_pred CEEEEecccccCC
Q psy11859 431 PVVIVRPSIVLPS 443 (851)
Q Consensus 431 ~~~ivRp~~V~G~ 443 (851)
.+..+.||.|..+
T Consensus 179 rvn~i~PG~i~t~ 191 (263)
T PRK06200 179 RVNGVAPGGTVTD 191 (263)
T ss_pred EEEEEeCCccccC
Confidence 8999999988654
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.2e-12 Score=135.75 Aligned_cols=165 Identities=17% Similarity=0.179 Sum_probs=119.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++|++||||||+|.||..+++.|++.| .+|+++.|... ++.++. ++.+. ..++..+.+|++
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G---~~V~~~~r~~~------~l~~~~---------~~l~~-~~~~~~~~~Dv~ 67 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARG---AKLALVDLEEA------ELAALA---------AELGG-DDRVLTVVADVT 67 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHHH---------HHhcC-CCcEEEEEecCC
Confidence 578999999999999999999999998 68888888642 221111 11111 235667789999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEe
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM--KKLVAFIHF 359 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~--~~~~~fV~v 359 (851)
|++ ++..++ ..+|+|||+||.... .+.++..+++|+.|+.++++++... ....++|++
T Consensus 68 d~~------~v~~~~~~~~~~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~i 141 (296)
T PRK05872 68 DLA------AMQAAAEEAVERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQV 141 (296)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 876 554443 368999999997542 2345678999999999999988642 113579999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..+... .|. ...|+.||+..|.+++..+. ++.+.+
T Consensus 142 sS~~~~~~----------~~~----------------------------~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~ 183 (296)
T PRK05872 142 SSLAAFAA----------APG----------------------------MAAYCASKAGVEAFANALRLEVAHHGVTVGS 183 (296)
T ss_pred eCHhhcCC----------CCC----------------------------chHHHHHHHHHHHHHHHHHHHHHHHCcEEEE
Confidence 99755432 111 12499999999998876542 899999
Q ss_pred EecccccCC
Q psy11859 435 VRPSIVLPS 443 (851)
Q Consensus 435 vRp~~V~G~ 443 (851)
+.||.|..+
T Consensus 184 v~Pg~v~T~ 192 (296)
T PRK05872 184 AYLSWIDTD 192 (296)
T ss_pred EecCcccch
Confidence 999888655
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.3e-12 Score=151.91 Aligned_cols=168 Identities=17% Similarity=0.234 Sum_probs=122.0
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
-++||+|+||||||+||++++++|++.| .+|+++.|.... +.++ .+.+.. ...++.++.+|+
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G---~~V~~~~r~~~~------~~~~-----~~~~~~----~~~~~~~~~~Dv 429 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAG---ATVFLVARNGEA------LDEL-----VAEIRA----KGGTAHAYTCDL 429 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHH------HHHH-----HHHHHh----cCCcEEEEEecC
Confidence 3578999999999999999999999998 689999886422 1111 011111 123688999999
Q ss_pred CCCcCCCCHHHHHHHhc-------CccEEEEccccCCc---------chhHHHHHHHHHHHHHHHHHHHHhc---CCceE
Q psy11859 295 LQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL---------EAELKENVAANTRGTQRLLDIALKM---KKLVA 355 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~---------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~ 355 (851)
+|++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++... .+..+
T Consensus 430 ~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~ 503 (657)
T PRK07201 430 TDSA------AVDHTVKDILAEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGH 503 (657)
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCE
Confidence 9886 5555544 68999999996421 1346678999999999887776431 13578
Q ss_pred EEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CC
Q psy11859 356 FIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KL 430 (851)
Q Consensus 356 fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l 430 (851)
+|++||..++... ... ..|+.||+..+.+++.++. ++
T Consensus 504 iv~isS~~~~~~~---------~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~~i 545 (657)
T PRK07201 504 VVNVSSIGVQTNA---------PRF-----------------------------SAYVASKAALDAFSDVAASETLSDGI 545 (657)
T ss_pred EEEECChhhcCCC---------CCc-----------------------------chHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999997665321 111 3499999999998876542 89
Q ss_pred CEEEEecccccCCC
Q psy11859 431 PVVIVRPSIVLPSF 444 (851)
Q Consensus 431 ~~~ivRp~~V~G~~ 444 (851)
.+.+++||.|..+.
T Consensus 546 ~v~~v~pg~v~T~~ 559 (657)
T PRK07201 546 TFTTIHMPLVRTPM 559 (657)
T ss_pred cEEEEECCcCcccc
Confidence 99999999987653
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=7e-12 Score=132.83 Aligned_cols=166 Identities=14% Similarity=0.202 Sum_probs=115.5
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcC
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANL 299 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~l 299 (851)
+|+||||+|+||+++++.|++.| .+|+++.|.... ..+.+.+ .+..... ...+..+.+|+++++
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G---~~v~~~~r~~~~--~~~~~~~--------~~~~~~~--~~~~~~~~~D~~~~~- 64 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQG---AKVFLTDINDAA--GLDAFAA--------EINAAHG--EGVAFAAVQDVTDEA- 64 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCcch--HHHHHHH--------HHHhcCC--CceEEEEEeecCCHH-
Confidence 38999999999999999999998 689999887321 1122211 1111100 123456889999876
Q ss_pred CCCHHHHHHHh-------cCccEEEEccccCCcc-------hhHHHHHHHHHH----HHHHHHHHHHhcCCceEEEEeee
Q psy11859 300 GIKDSDLLMLQ-------EEVSVVFNGAASLKLE-------AELKENVAANTR----GTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 300 gls~~~~~~~~-------~~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~----Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
++..++ .++|+|||+|+..... +.+...+++|+. ++..++.++++.+ ..+||++||
T Consensus 65 -----~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~ii~~ss 138 (251)
T PRK07069 65 -----QWQALLAQAADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQ-PASIVNISS 138 (251)
T ss_pred -----HHHHHHHHHHHHcCCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC-CcEEEEecC
Confidence 554443 3689999999976432 234567889988 7788888887664 689999999
Q ss_pred eeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-------CCCEEE
Q psy11859 362 AFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-------KLPVVI 434 (851)
Q Consensus 362 a~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-------~l~~~i 434 (851)
..++... ... ..|+.||+..+.+++.++. ++.+.+
T Consensus 139 ~~~~~~~---------~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~ 180 (251)
T PRK07069 139 VAAFKAE---------PDY-----------------------------TAYNASKAAVASLTKSIALDCARRGLDVRCNS 180 (251)
T ss_pred hhhccCC---------CCC-----------------------------chhHHHHHHHHHHHHHHHHHhcccCCcEEEEE
Confidence 7554321 111 2399999999988876532 478899
Q ss_pred EecccccCCCC
Q psy11859 435 VRPSIVLPSFQ 445 (851)
Q Consensus 435 vRp~~V~G~~~ 445 (851)
++|+.|.+|..
T Consensus 181 v~pg~v~t~~~ 191 (251)
T PRK07069 181 IHPTFIRTGIV 191 (251)
T ss_pred EeecccCCcch
Confidence 99999988754
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.4e-12 Score=131.20 Aligned_cols=162 Identities=19% Similarity=0.209 Sum_probs=114.9
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
++|+||||+|+||+.++++|++.| .+|+++.|..... +.+.+ ..++.++.+|++|++
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G---~~V~~~~r~~~~~---~~~~~-----------------~~~~~~~~~D~~d~~ 58 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERG---WQVTATVRGPQQD---TALQA-----------------LPGVHIEKLDMNDPA 58 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCC---CEEEEEeCCCcch---HHHHh-----------------ccccceEEcCCCCHH
Confidence 689999999999999999999998 6899999976432 11111 125678889999875
Q ss_pred CCCCHHHHHHHhc-----CccEEEEccccCCc---------chhHHHHHHHHHHHHHHHHHHHHhcC--CceEEEEeeee
Q psy11859 299 LGIKDSDLLMLQE-----EVSVVFNGAASLKL---------EAELKENVAANTRGTQRLLDIALKMK--KLVAFIHFSTA 362 (851)
Q Consensus 299 lgls~~~~~~~~~-----~vd~ViH~AA~~~~---------~~~~~~~~~~Nv~Gt~~ll~~a~~~~--~~~~fV~vSTa 362 (851)
++..+.+ ++|+|||+|+.... .+.+...+.+|+.|+..+++++...- .-..++++||.
T Consensus 59 ------~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~ 132 (225)
T PRK08177 59 ------SLDQLLQRLQGQRFDLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQ 132 (225)
T ss_pred ------HHHHHHHHhhcCCCCEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccC
Confidence 4444433 58999999987532 13455678899999999999886431 12467888875
Q ss_pred eeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEec
Q psy11859 363 FCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVRP 437 (851)
Q Consensus 363 ~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivRp 437 (851)
++..... ...+. ..|+.+|+..|.++..++. ++.+..++|
T Consensus 133 ~g~~~~~------~~~~~-----------------------------~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~P 177 (225)
T PRK08177 133 LGSVELP------DGGEM-----------------------------PLYKASKAALNSMTRSFVAELGEPTLTVLSMHP 177 (225)
T ss_pred ccccccC------CCCCc-----------------------------cchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcC
Confidence 4321100 00111 2399999999999987643 688999999
Q ss_pred ccccCCC
Q psy11859 438 SIVLPSF 444 (851)
Q Consensus 438 ~~V~G~~ 444 (851)
|.|-.+.
T Consensus 178 G~i~t~~ 184 (225)
T PRK08177 178 GWVKTDM 184 (225)
T ss_pred CceecCC
Confidence 9886654
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=132.03 Aligned_cols=171 Identities=22% Similarity=0.226 Sum_probs=119.4
Q ss_pred hhcCCCEEEEecCccH-HHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 214 RWYAGRSVLVTGGTGF-MGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 214 ~~~~~k~VlVTGatGF-IG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
....+++||||||+|+ ||+.+++.|++.| ..|++.+|.... +.+. .+.+++..+ ..++.++.+
T Consensus 13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G---~~V~~~~~~~~~------~~~~-----~~~~~~~~~--~~~~~~~~~ 76 (262)
T PRK07831 13 GLLAGKVVLVTAAAGTGIGSATARRALEEG---ARVVISDIHERR------LGET-----ADELAAELG--LGRVEAVVC 76 (262)
T ss_pred cccCCCEEEEECCCcccHHHHHHHHHHHcC---CEEEEEeCCHHH------HHHH-----HHHHHHhcC--CceEEEEEc
Confidence 4567899999999986 9999999999998 568888775432 1111 111211111 136888999
Q ss_pred CCCCCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc----CCce
Q psy11859 293 DILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM----KKLV 354 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~~~~ 354 (851)
|+++++ ++..++ ..+|+|||+|+.... .+.+...+++|+.|+..+++++... +.-.
T Consensus 77 Dl~~~~------~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g 150 (262)
T PRK07831 77 DVTSEA------QVDALIDAAVERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGG 150 (262)
T ss_pred cCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCc
Confidence 999876 555444 368999999996432 1346677899999999998887642 1134
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~ 429 (851)
.+|++||..+... ..+. ..|+.||+..|.+++.++. +
T Consensus 151 ~iv~~ss~~~~~~---------~~~~-----------------------------~~Y~~sKaal~~~~~~la~e~~~~g 192 (262)
T PRK07831 151 VIVNNASVLGWRA---------QHGQ-----------------------------AHYAAAKAGVMALTRCSALEAAEYG 192 (262)
T ss_pred EEEEeCchhhcCC---------CCCC-----------------------------cchHHHHHHHHHHHHHHHHHhCccC
Confidence 7888888543211 1111 3499999999999887652 7
Q ss_pred CCEEEEecccccCCC
Q psy11859 430 LPVVIVRPSIVLPSF 444 (851)
Q Consensus 430 l~~~ivRp~~V~G~~ 444 (851)
+.+.+++||.+..+.
T Consensus 193 I~v~~i~Pg~~~t~~ 207 (262)
T PRK07831 193 VRINAVAPSIAMHPF 207 (262)
T ss_pred eEEEEEeeCCccCcc
Confidence 999999999988764
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=132.90 Aligned_cols=165 Identities=17% Similarity=0.171 Sum_probs=112.7
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|+||||||+||..+++.|++.| ..|+++.|.... .+.+ -+.++.. ....+.++.+|+++++
T Consensus 1 k~vlItGas~giG~~la~~la~~G---~~vv~~~r~~~~---~~~~--------~~~~~~~---~~~~~~~~~~D~~~~~ 63 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQG---AELFLTDRDADG---LAQT--------VADARAL---GGTVPEHRALDISDYD 63 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHH--------HHHHHhc---CCCcceEEEeeCCCHH
Confidence 579999999999999999999988 578888885421 1111 1111111 1123556789999876
Q ss_pred CCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh----cCCceEEEEee
Q psy11859 299 LGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK----MKKLVAFIHFS 360 (851)
Q Consensus 299 lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~----~~~~~~fV~vS 360 (851)
++..++ .++|+|||+||.... .+.++..+++|+.|+.++++++.. .+...++|++|
T Consensus 64 ------~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~is 137 (272)
T PRK07832 64 ------AVAAFAADIHAAHGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVS 137 (272)
T ss_pred ------HHHHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEc
Confidence 444333 358999999986432 134567899999999999998753 12235899999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~iv 435 (851)
|..+.. +.|. ...|+.||+..+.+....+ . +++++++
T Consensus 138 S~~~~~----------~~~~----------------------------~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v 179 (272)
T PRK07832 138 SAAGLV----------ALPW----------------------------HAAYSASKFGLRGLSEVLRFDLARHGIGVSVV 179 (272)
T ss_pred cccccC----------CCCC----------------------------CcchHHHHHHHHHHHHHHHHHhhhcCcEEEEE
Confidence 964321 1111 1349999997776665443 3 8999999
Q ss_pred ecccccCCC
Q psy11859 436 RPSIVLPSF 444 (851)
Q Consensus 436 Rp~~V~G~~ 444 (851)
+||.|.++.
T Consensus 180 ~Pg~v~t~~ 188 (272)
T PRK07832 180 VPGAVKTPL 188 (272)
T ss_pred ecCcccCcc
Confidence 999998774
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.3e-12 Score=151.58 Aligned_cols=166 Identities=19% Similarity=0.204 Sum_probs=120.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+.|++||||||+|+||+.+++.|++.| .+|++++|.... .+.+.+ .+. .. .++.++.+|++
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~G---a~Vvl~~r~~~~---~~~~~~--------~l~----~~-~~v~~v~~Dvt 480 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEG---ACVVLADLDEEA---AEAAAA--------ELG----GP-DRALGVACDVT 480 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCc---CEEEEEeCCHHH---HHHHHH--------HHh----cc-CcEEEEEecCC
Confidence 578999999999999999999999988 578999886532 111111 111 11 47889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCc-eEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKL-VAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~-~~fV 357 (851)
+++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++... .+. .+||
T Consensus 481 d~~------~v~~~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV 554 (681)
T PRK08324 481 DEA------AVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIV 554 (681)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 876 5544443 68999999996532 2346678999999999998887542 112 6899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+... ..+. ..|+.||+..|.+++.++. ++++
T Consensus 555 ~vsS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~l~~~la~e~~~~gIrv 596 (681)
T PRK08324 555 FIASKNAVNP---------GPNF-----------------------------GAYGAAKAAELHLVRQLALELGPDGIRV 596 (681)
T ss_pred EECCccccCC---------CCCc-----------------------------HHHHHHHHHHHHHHHHHHHHhcccCeEE
Confidence 9999644211 0111 3499999999999987643 7999
Q ss_pred EEEeccccc-CCC
Q psy11859 433 VIVRPSIVL-PSF 444 (851)
Q Consensus 433 ~ivRp~~V~-G~~ 444 (851)
.+++|+.|| ++.
T Consensus 597 n~v~Pg~v~~~t~ 609 (681)
T PRK08324 597 NGVNPDAVVRGSG 609 (681)
T ss_pred EEEeCceeecCCc
Confidence 999999998 553
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.6e-12 Score=148.82 Aligned_cols=167 Identities=17% Similarity=0.151 Sum_probs=119.8
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
-+.++++|||||+|+||++++++|++.| .+|+++.|+... .+.+. +.++. ...++.++.+|+
T Consensus 312 ~~~~~~~lv~G~s~giG~~~a~~l~~~G---~~v~~~~r~~~~---~~~~~--------~~~~~----~~~~~~~~~~Dv 373 (582)
T PRK05855 312 PFSGKLVVVTGAGSGIGRETALAFAREG---AEVVASDIDEAA---AERTA--------ELIRA----AGAVAHAYRVDV 373 (582)
T ss_pred cCCCCEEEEECCcCHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHH--------HHHHh----cCCeEEEEEcCC
Confidence 3567899999999999999999999998 678898886422 11111 11111 123688999999
Q ss_pred CCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc----CCceEE
Q psy11859 295 LQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM----KKLVAF 356 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~~~~~f 356 (851)
+|++ ++..+++ .+|+|||+||.... .+.+...+++|+.|+.++++++... +.-.++
T Consensus 374 ~~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~i 447 (582)
T PRK05855 374 SDAD------AMEAFAEWVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHI 447 (582)
T ss_pred CCHH------HHHHHHHHHHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEE
Confidence 9986 5555443 48999999997543 2356677999999999998876432 212489
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~ 431 (851)
|++||..++... .+. ..|+.||+..|.++...+ + ++.
T Consensus 448 v~~sS~~~~~~~---------~~~-----------------------------~~Y~~sKaa~~~~~~~l~~e~~~~gi~ 489 (582)
T PRK05855 448 VNVASAAAYAPS---------RSL-----------------------------PAYATSKAAVLMLSECLRAELAAAGIG 489 (582)
T ss_pred EEECChhhccCC---------CCC-----------------------------cHHHHHHHHHHHHHHHHHHHhcccCcE
Confidence 999997665421 112 349999998887776543 3 899
Q ss_pred EEEEecccccCC
Q psy11859 432 VVIVRPSIVLPS 443 (851)
Q Consensus 432 ~~ivRp~~V~G~ 443 (851)
++++.||.|-.+
T Consensus 490 v~~v~Pg~v~t~ 501 (582)
T PRK05855 490 VTAICPGFVDTN 501 (582)
T ss_pred EEEEEeCCCccc
Confidence 999999988554
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-11 Score=135.19 Aligned_cols=167 Identities=20% Similarity=0.247 Sum_probs=117.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++|+||||+|.||++++++|++.| .+|+++.|... +++++. +.+++ ...++.++.+|++
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G---~~Vvl~~R~~~------~l~~~~-----~~~~~----~g~~~~~~~~Dv~ 66 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRG---ARLVLAARDEE------ALQAVA-----EECRA----LGAEVLVVPTDVT 66 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHHH-----HHHHh----cCCcEEEEEeeCC
Confidence 467999999999999999999999998 67888888642 222111 11111 1236788999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc---c----hhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL---E----AELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~---~----~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..++ ..+|++||+|+...+ . +.++..+++|+.|+.++.+++... .+...+|+
T Consensus 67 d~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~ 140 (330)
T PRK06139 67 DAD------QVKALATQAASFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFIN 140 (330)
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 876 555554 368999999996433 1 345678999999999988887431 12358999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHH----HHHHHHHHhC--CCCE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRL----TETLVDEYKT--KLPV 432 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~----aE~~v~~~~~--~l~~ 432 (851)
+||..++.. .|. ...|+.||+. +|.+..++.. ++.+
T Consensus 141 isS~~~~~~----------~p~----------------------------~~~Y~asKaal~~~~~sL~~El~~~~gI~V 182 (330)
T PRK06139 141 MISLGGFAA----------QPY----------------------------AAAYSASKFGLRGFSEALRGELADHPDIHV 182 (330)
T ss_pred EcChhhcCC----------CCC----------------------------chhHHHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 998654321 111 1349999996 5555555543 7899
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
+.+.|+.|..|.
T Consensus 183 ~~v~Pg~v~T~~ 194 (330)
T PRK06139 183 CDVYPAFMDTPG 194 (330)
T ss_pred EEEecCCccCcc
Confidence 999999987763
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-11 Score=128.69 Aligned_cols=158 Identities=18% Similarity=0.094 Sum_probs=116.0
Q ss_pred EEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcCCC
Q psy11859 222 LVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLGI 301 (851)
Q Consensus 222 lVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lgl 301 (851)
|||||+|+||+.++++|++.| .+|+++.|... ++.++ .+.+. ...+++++.+|+++++
T Consensus 1 lItGas~~iG~~~a~~l~~~G---~~v~~~~r~~~------~~~~~-----~~~~~-----~~~~~~~~~~Dl~~~~--- 58 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEG---ARVTIASRSRD------RLAAA-----ARALG-----GGAPVRTAALDITDEA--- 58 (230)
T ss_pred CeecCCChHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH-----HHHHh-----cCCceEEEEccCCCHH---
Confidence 699999999999999999998 67888888632 11111 01111 1236889999999886
Q ss_pred CHHHHHHHhc---CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCccc
Q psy11859 302 KDSDLLMLQE---EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVL 371 (851)
Q Consensus 302 s~~~~~~~~~---~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i 371 (851)
++..+++ .+|++||+|+.... .+.+...+++|+.|+.+++++... .+..++|++||..++..
T Consensus 59 ---~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~g~iv~~ss~~~~~~---- 130 (230)
T PRK07041 59 ---AVDAFFAEAGPFDHVVITAADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAARI-APGGSLTFVSGFAAVRP---- 130 (230)
T ss_pred ---HHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhh-cCCeEEEEECchhhcCC----
Confidence 6666665 47999999986432 134667899999999999995543 34689999999765432
Q ss_pred ccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC---CCCEEEEecccccCC
Q psy11859 372 EEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT---KLPVVIVRPSIVLPS 443 (851)
Q Consensus 372 ~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~---~l~~~ivRp~~V~G~ 443 (851)
..+. +.|+.||+..|.+++..+. ++.+..++|+.+-.+
T Consensus 131 -----~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~irv~~i~pg~~~t~ 171 (230)
T PRK07041 131 -----SASG-----------------------------VLQGAINAALEALARGLALELAPVRVNTVSPGLVDTP 171 (230)
T ss_pred -----CCcc-----------------------------hHHHHHHHHHHHHHHHHHHHhhCceEEEEeecccccH
Confidence 1112 3499999999999987654 678899999987654
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.7e-12 Score=132.26 Aligned_cols=161 Identities=20% Similarity=0.214 Sum_probs=111.7
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+||||||+|+||+.++++|++.| .+|+++.|.... ++..+. + ....+++++.+|+++++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g---~~V~~~~r~~~~-----~~~~~~---------~---~~~~~~~~~~~D~~~~~ 61 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKG---THVISISRTENK-----ELTKLA---------E---QYNSNLTFHSLDLQDVH 61 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcC---CEEEEEeCCchH-----HHHHHH---------h---ccCCceEEEEecCCCHH
Confidence 689999999999999999999998 578888886421 122111 0 11247889999999886
Q ss_pred CCCCHHHHHHHhcCc-----------cEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHh----cCCceE
Q psy11859 299 LGIKDSDLLMLQEEV-----------SVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALK----MKKLVA 355 (851)
Q Consensus 299 lgls~~~~~~~~~~v-----------d~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~----~~~~~~ 355 (851)
++..+++++ .++||+||.... .+.+...+++|+.|+..+++.+.. .+...+
T Consensus 62 ------~~~~~~~~~~~~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 135 (251)
T PRK06924 62 ------ELETNFNEILSSIQEDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKR 135 (251)
T ss_pred ------HHHHHHHHHHHhcCcccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCce
Confidence 555554321 279999987532 134567788999997777666543 222468
Q ss_pred EEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-------
Q psy11859 356 FIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT------- 428 (851)
Q Consensus 356 fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~------- 428 (851)
||++||..+... ..+. ..|+.||+..|.+++.++.
T Consensus 136 iv~~sS~~~~~~---------~~~~-----------------------------~~Y~~sKaa~~~~~~~la~e~~~~~~ 177 (251)
T PRK06924 136 VINISSGAAKNP---------YFGW-----------------------------SAYCSSKAGLDMFTQTVATEQEEEEY 177 (251)
T ss_pred EEEecchhhcCC---------CCCc-----------------------------HHHhHHHHHHHHHHHHHHHHhhhcCC
Confidence 999999654211 1112 3499999999999876542
Q ss_pred CCCEEEEecccccCC
Q psy11859 429 KLPVVIVRPSIVLPS 443 (851)
Q Consensus 429 ~l~~~ivRp~~V~G~ 443 (851)
++.+..++||.|-.+
T Consensus 178 ~i~v~~v~Pg~v~t~ 192 (251)
T PRK06924 178 PVKIVAFSPGVMDTN 192 (251)
T ss_pred CeEEEEecCCccccH
Confidence 578889999877543
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-11 Score=130.20 Aligned_cols=168 Identities=20% Similarity=0.247 Sum_probs=116.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++|++++||||+|.||+++++.|++.| .+|+++.|.... +.+. .+.+.+..+. .++.++.+|++
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G---~~V~~~~r~~~~------~~~~-----~~~~~~~~~~--~~~~~~~~D~~ 69 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAG---ASVAICGRDEER------LASA-----EARLREKFPG--ARLLAARCDVL 69 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC---CeEEEEeCCHHH------HHHH-----HHHHHhhCCC--ceEEEEEecCC
Confidence 578999999999999999999999998 678899886432 1111 1112222111 36888999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..++ ..+|+|||+|+.... .+.+...+++|+.|...+++++... .+..++|+
T Consensus 70 ~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~ 143 (265)
T PRK07062 70 DEA------DVAAFAAAVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVC 143 (265)
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEE
Confidence 986 544433 358999999996432 1346677899999888777766431 12468999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ 433 (851)
+||..+... .|.. ..|+.+|+..+.+++..+ + ++.+.
T Consensus 144 isS~~~~~~----------~~~~----------------------------~~y~asKaal~~~~~~la~e~~~~gi~v~ 185 (265)
T PRK07062 144 VNSLLALQP----------EPHM----------------------------VATSAARAGLLNLVKSLATELAPKGVRVN 185 (265)
T ss_pred eccccccCC----------CCCc----------------------------hHhHHHHHHHHHHHHHHHHHhhhcCeEEE
Confidence 999654321 1111 239999998777765543 2 89999
Q ss_pred EEecccccCC
Q psy11859 434 IVRPSIVLPS 443 (851)
Q Consensus 434 ivRp~~V~G~ 443 (851)
.+.||.|-.+
T Consensus 186 ~i~PG~v~t~ 195 (265)
T PRK07062 186 SILLGLVESG 195 (265)
T ss_pred EEecCccccc
Confidence 9999988654
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3e-11 Score=129.42 Aligned_cols=167 Identities=16% Similarity=0.149 Sum_probs=117.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||+|.||+.++++|++.| .+|++++|.... .+.+. +.++.. ...++.++.+|++
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G---~~V~~~~r~~~~---~~~~~--------~~~~~~---~~~~~~~~~~Dv~ 68 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAG---ADVILLSRNEEN---LKKAR--------EKIKSE---SNVDVSYIVADLT 68 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHH--------HHHHhh---cCCceEEEEecCC
Confidence 578999999999999999999999998 678888886432 11111 111111 1236889999999
Q ss_pred CCcCCCCHHHHHHHhc------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEe
Q psy11859 296 QANLGIKDSDLLMLQE------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHF 359 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~v 359 (851)
+++ ++..+++ .+|++||+||.... .+.++..+++|+.|+..+.+++... .+..++|++
T Consensus 69 ~~~------~i~~~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~i 142 (263)
T PRK08339 69 KRE------DLERTVKELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYS 142 (263)
T ss_pred CHH------HHHHHHHHHHhhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 986 5555543 58999999996432 2456788999998877776665431 124689999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..+... .|. ...|+.||+.-+.+.+..+. |+.+..
T Consensus 143 sS~~~~~~----------~~~----------------------------~~~y~asKaal~~l~~~la~el~~~gIrVn~ 184 (263)
T PRK08339 143 TSVAIKEP----------IPN----------------------------IALSNVVRISMAGLVRTLAKELGPKGITVNG 184 (263)
T ss_pred cCccccCC----------CCc----------------------------chhhHHHHHHHHHHHHHHHHHhcccCeEEEE
Confidence 99654311 111 12399999998888776543 799999
Q ss_pred EecccccCC
Q psy11859 435 VRPSIVLPS 443 (851)
Q Consensus 435 vRp~~V~G~ 443 (851)
+.||.|-.+
T Consensus 185 v~PG~v~T~ 193 (263)
T PRK08339 185 IMPGIIRTD 193 (263)
T ss_pred EEeCcCccH
Confidence 999988654
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.3e-11 Score=126.64 Aligned_cols=157 Identities=15% Similarity=0.201 Sum_probs=112.3
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+|+||||||+|.||++++++|++.| .+|+++.|.... ..+.+ .. .++.++.+|++++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~--~~~~~------------~~------~~~~~~~~D~~~~ 58 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQG---QPVIVSYRTHYP--AIDGL------------RQ------AGAQCIQADFSTN 58 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCC---CeEEEEeCCchh--HHHHH------------HH------cCCEEEEcCCCCH
Confidence 5799999999999999999999998 688888886532 11111 11 1367899999987
Q ss_pred cCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CC--ceEEEE
Q psy11859 298 NLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KK--LVAFIH 358 (851)
Q Consensus 298 ~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~--~~~fV~ 358 (851)
+ ++..++ .++|+|||+|+.... .+.++..+++|+.|+..+.+++... .. ..++|+
T Consensus 59 ~------~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~ 132 (236)
T PRK06483 59 A------GIMAFIDELKQHTDGLRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIH 132 (236)
T ss_pred H------HHHHHHHHHHhhCCCccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEE
Confidence 6 444332 358999999986422 2356678999999999887777542 11 247899
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----CCCEEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----KLPVVI 434 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----~l~~~i 434 (851)
+||..... +.|. ...|+.||+..|.+++.++. ++.+.+
T Consensus 133 ~ss~~~~~----------~~~~----------------------------~~~Y~asKaal~~l~~~~a~e~~~~irvn~ 174 (236)
T PRK06483 133 ITDYVVEK----------GSDK----------------------------HIAYAASKAALDNMTLSFAAKLAPEVKVNS 174 (236)
T ss_pred Ecchhhcc----------CCCC----------------------------CccHHHHHHHHHHHHHHHHHHHCCCcEEEE
Confidence 98853211 1111 13499999999999987654 688999
Q ss_pred Eeccccc
Q psy11859 435 VRPSIVL 441 (851)
Q Consensus 435 vRp~~V~ 441 (851)
|.||.|.
T Consensus 175 v~Pg~~~ 181 (236)
T PRK06483 175 IAPALIL 181 (236)
T ss_pred EccCcee
Confidence 9999874
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-11 Score=128.91 Aligned_cols=168 Identities=16% Similarity=0.090 Sum_probs=113.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|.||++++++|++.| .+|+++.|.... .+..+. ..+.. ....++.++.+|++
T Consensus 6 l~~k~vlItGas~gIG~~ia~~l~~~G---~~v~~~~~~~~~-----~~~~~~-----~~~~~---~~~~~~~~~~~D~~ 69 (260)
T PRK08416 6 MKGKTLVISGGTRGIGKAIVYEFAQSG---VNIAFTYNSNVE-----EANKIA-----EDLEQ---KYGIKAKAYPLNIL 69 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEcCCCHH-----HHHHHH-----HHHHH---hcCCceEEEEcCCC
Confidence 578999999999999999999999998 567776654321 111110 11111 11237889999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCC---------c----chhHHHHHHHHHHHHHHHHHHHHhc---CC
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLK---------L----EAELKENVAANTRGTQRLLDIALKM---KK 352 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~---------~----~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~ 352 (851)
|++ ++..++ .++|+|||+|+... + .+.+...+++|+.+...+.+.+... .+
T Consensus 70 ~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~ 143 (260)
T PRK08416 70 EPE------TYKELFKKIDEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVG 143 (260)
T ss_pred CHH------HHHHHHHHHHHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccC
Confidence 876 554443 35899999997531 1 1234567888998877766655431 12
Q ss_pred ceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----
Q psy11859 353 LVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT---- 428 (851)
Q Consensus 353 ~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~---- 428 (851)
-.++|++||..+.. +.|. ...|+.||+..+.+++.++.
T Consensus 144 ~g~iv~isS~~~~~----------~~~~----------------------------~~~Y~asK~a~~~~~~~la~el~~ 185 (260)
T PRK08416 144 GGSIISLSSTGNLV----------YIEN----------------------------YAGHGTSKAAVETMVKYAATELGE 185 (260)
T ss_pred CEEEEEEecccccc----------CCCC----------------------------cccchhhHHHHHHHHHHHHHHhhh
Confidence 46899999954321 1111 13499999999999877654
Q ss_pred -CCCEEEEecccccCC
Q psy11859 429 -KLPVVIVRPSIVLPS 443 (851)
Q Consensus 429 -~l~~~ivRp~~V~G~ 443 (851)
++.+..|.||.|-.+
T Consensus 186 ~gi~v~~v~PG~i~T~ 201 (260)
T PRK08416 186 KNIRVNAVSGGPIDTD 201 (260)
T ss_pred hCeEEEEEeeCcccCh
Confidence 799999999887544
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-11 Score=130.67 Aligned_cols=190 Identities=17% Similarity=0.138 Sum_probs=117.4
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+|+++|||| |+||+++++.|. .| .+|++++|.... ++++ .+.+.. ...++.++.+|++|+
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G---~~Vv~~~r~~~~------~~~~-----~~~l~~----~~~~~~~~~~Dv~d~ 61 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AG---KKVLLADYNEEN------LEAA-----AKTLRE----AGFDVSTQEVDVSSR 61 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CC---CEEEEEeCCHHH------HHHH-----HHHHHh----cCCeEEEEEeecCCH
Confidence 678999998 689999999996 66 689999886422 1111 011111 123688899999988
Q ss_pred cCCCCHHHHHHHh------cCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEeeeeeeeCCCcc
Q psy11859 298 NLGIKDSDLLMLQ------EEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKM-KKLVAFIHFSTAFCHPDQKV 370 (851)
Q Consensus 298 ~lgls~~~~~~~~------~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~vSTa~~~~~~~~ 370 (851)
+ ++..++ ..+|+|||+||......++...+++|+.|+.++++++... ..-.+.|.+||..+......
T Consensus 62 ~------~i~~~~~~~~~~g~id~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~ 135 (275)
T PRK06940 62 E------SVKALAATAQTLGPVTGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPAL 135 (275)
T ss_pred H------HHHHHHHHHHhcCCCCEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCccc
Confidence 6 555444 3589999999986656678899999999999999988653 11134566676543221100
Q ss_pred cccccCCCCCCHHHHHHHHhhccHHHHhhhC---CcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEEEEecccccC
Q psy11859 371 LEEKLYPSPVSPHDIMRAMEWMDDETIKQLT---PKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVVIVRPSIVLP 442 (851)
Q Consensus 371 i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ivRp~~V~G 442 (851)
..+..... ...+.+.+.... +....+....|+.||+.-+.+.+..+ . ++.+..+.||.|-.
T Consensus 136 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T 204 (275)
T PRK06940 136 TAEQERAL-----------ATTPTEELLSLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIIST 204 (275)
T ss_pred chhhhccc-----------cccccccccccccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcC
Confidence 00000000 000000000000 00000112569999999888876543 2 79999999999876
Q ss_pred CC
Q psy11859 443 SF 444 (851)
Q Consensus 443 ~~ 444 (851)
+.
T Consensus 205 ~~ 206 (275)
T PRK06940 205 PL 206 (275)
T ss_pred cc
Confidence 63
|
|
| >KOG1372|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.5e-12 Score=126.27 Aligned_cols=248 Identities=20% Similarity=0.154 Sum_probs=171.5
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
.+-..|..||||-||-=|++|.|-||..| ++|..++|..++- ..+|++.+...|.-. .........||
T Consensus 24 ~~r~rkvALITGItGQDGSYLaEfLL~Kg---YeVHGiiRRsSsF-NT~RIeHlY~nP~~h--------~~~~mkLHYgD 91 (376)
T KOG1372|consen 24 AFRPRKVALITGITGQDGSYLAEFLLSKG---YEVHGIIRRSSSF-NTARIEHLYSNPHTH--------NGASMKLHYGD 91 (376)
T ss_pred CcccceEEEEecccCCCchHHHHHHHhCC---ceeeEEEeecccc-chhhhhhhhcCchhc--------ccceeEEeecc
Confidence 34445678999999999999999999999 7888888876653 356777666544211 22467789999
Q ss_pred CCCCcCCCCHHHHHHHhc--CccEEEEccccCCcchhH---HHHHHHHHHHHHHHHHHHHhcC--CceEEEEeeeeeeeC
Q psy11859 294 ILQANLGIKDSDLLMLQE--EVSVVFNGAASLKLEAEL---KENVAANTRGTQRLLDIALKMK--KLVAFIHFSTAFCHP 366 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~--~vd~ViH~AA~~~~~~~~---~~~~~~Nv~Gt~~ll~~a~~~~--~~~~fV~vSTa~~~~ 366 (851)
++|.. .+..++. +++-|+|+||..++.-+. +-..++...||.+||++.+.++ .-.+|...||.--||
T Consensus 92 mTDss------~L~k~I~~ikPtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyG 165 (376)
T KOG1372|consen 92 MTDSS------CLIKLISTIKPTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYG 165 (376)
T ss_pred ccchH------HHHHHHhccCchhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcc
Confidence 99986 6777776 689999999987764322 2335678889999999998876 336889999987777
Q ss_pred CCc--ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccC
Q psy11859 367 DQK--VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLP 442 (851)
Q Consensus 367 ~~~--~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G 442 (851)
... |-.|..+..|.+| |+.+|..+-.++-.|.+ ++-.+---.+|--+
T Consensus 166 kv~e~PQsE~TPFyPRSP-----------------------------Ya~aKmy~~WivvNyREAYnmfAcNGILFNHES 216 (376)
T KOG1372|consen 166 KVQEIPQSETTPFYPRSP-----------------------------YAAAKMYGYWIVVNYREAYNMFACNGILFNHES 216 (376)
T ss_pred cccCCCcccCCCCCCCCh-----------------------------hHHhhhhheEEEEEhHHhhcceeeccEeecCCC
Confidence 543 6778888888888 99999999887766654 44333322334344
Q ss_pred CCCCC------chhHhhhhcC--CceEEEE---------cccCceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHH
Q psy11859 443 SFQEP------VPGWVDSLNG--PVGVLVA---------SGKGVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGK 505 (851)
Q Consensus 443 ~~~~p------~p~~i~~~~~--~~~~~~~---------~g~~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~ 505 (851)
|+... +..-+..+.- ...+.+| ...|.+.+|+........+-|.|..| ...|.+|+++...
T Consensus 217 PRRGenFVTRKItRsvakI~~gqqe~~~LGNL~a~RDWGhA~dYVEAMW~mLQ~d~PdDfViATg--e~hsVrEF~~~aF 294 (376)
T KOG1372|consen 217 PRRGENFVTRKITRSVAKISLGQQEKIELGNLSALRDWGHAGDYVEAMWLMLQQDSPDDFVIATG--EQHSVREFCNLAF 294 (376)
T ss_pred CccccchhhHHHHHHHHHhhhcceeeEEecchhhhcccchhHHHHHHHHHHHhcCCCCceEEecC--CcccHHHHHHHHH
Confidence 54321 2222222221 1222222 22355566665555666778999999 5689999999988
Q ss_pred HHhhc
Q psy11859 506 QLIYQ 510 (851)
Q Consensus 506 ~~~~~ 510 (851)
...|+
T Consensus 295 ~~ig~ 299 (376)
T KOG1372|consen 295 AEIGE 299 (376)
T ss_pred HhhCc
Confidence 88774
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.5e-11 Score=128.21 Aligned_cols=170 Identities=15% Similarity=0.151 Sum_probs=110.3
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
++|+||||+|+||++++++|++.| ..|+++.|..... .+.+ .+.+... ...++.++.+|++|++
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G---~~V~~~~~~~~~~--~~~~--------~~~l~~~---~~~~~~~~~~Dv~d~~ 65 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEG---YRVVLHYHRSAAA--ASTL--------AAELNAR---RPNSAVTCQADLSNSA 65 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCC---CeEEEEcCCcHHH--HHHH--------HHHHHhc---cCCceEEEEccCCCch
Confidence 579999999999999999999998 6788877653211 1111 1111111 1235678899999975
Q ss_pred CCCCHHHHHHH-------hcCccEEEEccccCCc------c------------hhHHHHHHHHHHHHHHHHHHHHhcC--
Q psy11859 299 LGIKDSDLLML-------QEEVSVVFNGAASLKL------E------------AELKENVAANTRGTQRLLDIALKMK-- 351 (851)
Q Consensus 299 lgls~~~~~~~-------~~~vd~ViH~AA~~~~------~------------~~~~~~~~~Nv~Gt~~ll~~a~~~~-- 351 (851)
- + ...+..+ ..++|+|||+||.... + ..+...+++|+.|+..+++++...-
T Consensus 66 ~-~-~~~~~~~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~ 143 (267)
T TIGR02685 66 T-L-FSRCEAIIDACFRAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAG 143 (267)
T ss_pred h-h-HHHHHHHHHHHHHccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Confidence 0 0 0011222 2369999999996421 1 1255779999999999998765321
Q ss_pred -------CceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHH
Q psy11859 352 -------KLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVD 424 (851)
Q Consensus 352 -------~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~ 424 (851)
.-..+|.+||..... +..+. ++|+.||+..|.+++
T Consensus 144 ~~~~~~~~~~~iv~~~s~~~~~---------~~~~~-----------------------------~~Y~asK~a~~~~~~ 185 (267)
T TIGR02685 144 TRAEQRSTNLSIVNLCDAMTDQ---------PLLGF-----------------------------TMYTMAKHALEGLTR 185 (267)
T ss_pred cccccCCCCeEEEEehhhhccC---------CCccc-----------------------------chhHHHHHHHHHHHH
Confidence 012466666642211 01111 359999999999998
Q ss_pred HHhC-----CCCEEEEecccccCCC
Q psy11859 425 EYKT-----KLPVVIVRPSIVLPSF 444 (851)
Q Consensus 425 ~~~~-----~l~~~ivRp~~V~G~~ 444 (851)
.++. ++.+++|+||.|..+.
T Consensus 186 ~la~e~~~~gi~v~~v~PG~~~~~~ 210 (267)
T TIGR02685 186 SAALELAPLQIRVNGVAPGLSLLPD 210 (267)
T ss_pred HHHHHHhhhCeEEEEEecCCccCcc
Confidence 7643 7999999999987553
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-11 Score=145.09 Aligned_cols=167 Identities=17% Similarity=0.151 Sum_probs=116.9
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
.+++|+||||||+|+||++++++|++.| .+|++++|.... .+.+ .+.+.... ...++..+.+|+
T Consensus 411 ~l~gkvvLVTGasggIG~aiA~~La~~G---a~Vvi~~r~~~~---~~~~--------~~~l~~~~--~~~~~~~v~~Dv 474 (676)
T TIGR02632 411 TLARRVAFVTGGAGGIGRETARRLAAEG---AHVVLADLNLEA---AEAV--------AAEINGQF--GAGRAVALKMDV 474 (676)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhCC---CEEEEEeCCHHH---HHHH--------HHHHHhhc--CCCcEEEEECCC
Confidence 3678999999999999999999999998 688888886432 1111 11111111 112577899999
Q ss_pred CCCcCCCCHHHHHHHhc-------CccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHh----cCCceEE
Q psy11859 295 LQANLGIKDSDLLMLQE-------EVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALK----MKKLVAF 356 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~----~~~~~~f 356 (851)
++++ ++..+++ ++|+|||+||..... +.+...+++|+.|+..+...+.. .+.-.++
T Consensus 475 td~~------~v~~a~~~i~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~I 548 (676)
T TIGR02632 475 TDEQ------AVKAAFADVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNI 548 (676)
T ss_pred CCHH------HHHHHHHHHHHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 9876 6655554 689999999965321 34567789999998887655532 2212479
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~ 431 (851)
|++||..+.. +.|. ...|+.||+..|.+++.++. ++.
T Consensus 549 V~iSS~~a~~----------~~~~----------------------------~~aY~aSKaA~~~l~r~lA~el~~~gIr 590 (676)
T TIGR02632 549 VFIASKNAVY----------AGKN----------------------------ASAYSAAKAAEAHLARCLAAEGGTYGIR 590 (676)
T ss_pred EEEeChhhcC----------CCCC----------------------------CHHHHHHHHHHHHHHHHHHHHhcccCeE
Confidence 9999954321 1111 13499999999999987643 789
Q ss_pred EEEEeccccc
Q psy11859 432 VVIVRPSIVL 441 (851)
Q Consensus 432 ~~ivRp~~V~ 441 (851)
+..++|+.|+
T Consensus 591 Vn~V~Pg~V~ 600 (676)
T TIGR02632 591 VNTVNPDAVL 600 (676)
T ss_pred EEEEECCcee
Confidence 9999999886
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.4e-11 Score=127.12 Aligned_cols=209 Identities=18% Similarity=0.228 Sum_probs=144.6
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
++|||||||||+|++++++|++.+ +.|.++.|........ . ..++++.+|+.++.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~---~~v~~~~r~~~~~~~~---------------------~-~~v~~~~~d~~~~~ 55 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARG---HEVRAAVRNPEAAAAL---------------------A-GGVEVVLGDLRDPK 55 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCC---CEEEEEEeCHHHHHhh---------------------c-CCcEEEEeccCCHh
Confidence 579999999999999999999997 7899999986542110 0 47899999999998
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccCCC
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPS 378 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~~~ 378 (851)
.+....++++.++++..... ... ......+.+..+..+.+. . .++.++++|...+..
T Consensus 56 ------~l~~a~~G~~~~~~i~~~~~-~~~--~~~~~~~~~~~~~a~~a~-~-~~~~~~~~s~~~~~~------------ 112 (275)
T COG0702 56 ------SLVAGAKGVDGVLLISGLLD-GSD--AFRAVQVTAVVRAAEAAG-A-GVKHGVSLSVLGADA------------ 112 (275)
T ss_pred ------HHHHHhccccEEEEEecccc-ccc--chhHHHHHHHHHHHHHhc-C-CceEEEEeccCCCCC------------
Confidence 89999999999999999876 443 333445555556666554 3 478899998853311
Q ss_pred CCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhHhhhhcCC
Q psy11859 379 PVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDSLNGP 458 (851)
Q Consensus 379 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~i~~~~~~ 458 (851)
.+ +..|..+|..+|.++... +++.+++||...+....... +......
T Consensus 113 -~~---------------------------~~~~~~~~~~~e~~l~~s--g~~~t~lr~~~~~~~~~~~~---~~~~~~~ 159 (275)
T COG0702 113 -AS---------------------------PSALARAKAAVEAALRSS--GIPYTTLRRAAFYLGAGAAF---IEAAEAA 159 (275)
T ss_pred -CC---------------------------ccHHHHHHHHHHHHHHhc--CCCeEEEecCeeeeccchhH---HHHHHhh
Confidence 11 234999999999999874 79999999776665544332 2221111
Q ss_pred ceEEEEcccCceeEEEeec---------C--CCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 459 VGVLVASGKGVVRSMILND---------L--STETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 459 ~~~~~~~g~~v~~~~~~~~---------~--~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
..+....+.+....+..++ . ...+.+|.++.. ...+..++.+.+....++
T Consensus 160 ~~~~~~~~~~~~~~i~~~d~a~~~~~~l~~~~~~~~~~~l~g~--~~~~~~~~~~~l~~~~gr 220 (275)
T COG0702 160 GLPVIPRGIGRLSPIAVDDVAEALAAALDAPATAGRTYELAGP--EALTLAELASGLDYTIGR 220 (275)
T ss_pred CCceecCCCCceeeeEHHHHHHHHHHHhcCCcccCcEEEccCC--ceecHHHHHHHHHHHhCC
Confidence 1122222222222221111 1 246789999887 679999999999999886
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-12 Score=153.33 Aligned_cols=61 Identities=25% Similarity=0.338 Sum_probs=58.9
Q ss_pred ccccccccCceEecCccHHHHHhcCCcccccccccccCCCCHHHHHHH-HHhHHhhhhcCCC
Q psy11859 2 HLLEYFTTRNWDFKNKRLLALHDNISEKDKQTFYIANIDVNIDDYLKT-IILGARQYCLKEP 62 (851)
Q Consensus 2 ~~l~~F~~~~W~f~~~n~~~l~~~l~~~d~~~F~~d~~~~~w~~y~~~-~~~G~r~yl~ke~ 62 (851)
++++||++++|.|+|+|+++|++.|+++||++|+||++.+||++||.+ |+.|+|+|++|+.
T Consensus 543 ~~~~~ft~~~w~F~~~n~~~L~~~ms~~Dr~~F~~D~~~idW~~Y~~~~~i~G~rky~lk~~ 604 (605)
T PLN02503 543 SIYEPYTFYGGRFDNSNTQRLMERMSEEEKAEFGFDVGSIDWRDYITNVHIPGLRRHVMKGR 604 (605)
T ss_pred HHHhhheeCeEEEechHHHHHHHhCCHHHhhccCCCcCCCCHHHHHHHhhhhHHHHHHhccC
Confidence 578999999999999999999999999999999999999999999997 9999999999984
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4e-11 Score=138.65 Aligned_cols=165 Identities=21% Similarity=0.195 Sum_probs=116.6
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
...++++||||||+|.||..+++.|++.| .+|++++|+... +.+.++. .+ -+..++.+|
T Consensus 206 ~~~~g~~vlItGasggIG~~la~~l~~~G---a~vi~~~~~~~~----~~l~~~~---------~~-----~~~~~~~~D 264 (450)
T PRK08261 206 RPLAGKVALVTGAARGIGAAIAEVLARDG---AHVVCLDVPAAG----EALAAVA---------NR-----VGGTALALD 264 (450)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCC---CEEEEEeCCccH----HHHHHHH---------HH-----cCCeEEEEe
Confidence 34678999999999999999999999998 678888875322 2222111 11 023578899
Q ss_pred CCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhcC---CceEE
Q psy11859 294 ILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKMK---KLVAF 356 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~---~~~~f 356 (851)
+++++ ++..+++ ++|+|||+|+.... .+.+...+++|+.|+.++.+++.... .-.+|
T Consensus 265 v~~~~------~~~~~~~~~~~~~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~i 338 (450)
T PRK08261 265 ITAPD------APARIAEHLAERHGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRI 338 (450)
T ss_pred CCCHH------HHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEE
Confidence 99876 4444432 58999999997542 24566789999999999999997632 12689
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~ 431 (851)
|++||..+.... ... ..|+.+|+..+.++..++ . +++
T Consensus 339 v~~SS~~~~~g~---------~~~-----------------------------~~Y~asKaal~~~~~~la~el~~~gi~ 380 (450)
T PRK08261 339 VGVSSISGIAGN---------RGQ-----------------------------TNYAASKAGVIGLVQALAPLLAERGIT 380 (450)
T ss_pred EEECChhhcCCC---------CCC-----------------------------hHHHHHHHHHHHHHHHHHHHHhhhCcE
Confidence 999996542110 111 239999997777665543 2 899
Q ss_pred EEEEecccccCC
Q psy11859 432 VVIVRPSIVLPS 443 (851)
Q Consensus 432 ~~ivRp~~V~G~ 443 (851)
+.++.||.|-.+
T Consensus 381 v~~v~PG~i~t~ 392 (450)
T PRK08261 381 INAVAPGFIETQ 392 (450)
T ss_pred EEEEEeCcCcch
Confidence 999999987543
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-11 Score=142.77 Aligned_cols=165 Identities=15% Similarity=0.180 Sum_probs=121.3
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
...||++|||||+|.||..+++.|++.| .+|+++.|... +++++ .++ ...++..+.+|+
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G---~~V~~~~r~~~------~~~~~---------~~~---~~~~~~~~~~D~ 324 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAG---DRLLIIDRDAE------GAKKL---------AEA---LGDEHLSVQADI 324 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH---------HHH---hCCceeEEEccC
Confidence 4589999999999999999999999998 68888888532 22111 111 113567789999
Q ss_pred CCCcCCCCHHHHHHHh-------cCccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEE
Q psy11859 295 LQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKM-KKLVAFIH 358 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~ 358 (851)
+|++ ++..++ ..+|+|||+||.... .+.++..+++|+.|+.++++++... .+-.++|+
T Consensus 325 ~~~~------~~~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~ 398 (520)
T PRK06484 325 TDEA------AVESAFAQIQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVN 398 (520)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEE
Confidence 9886 555443 358999999997521 1345678999999999999988753 22358999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... ..+. ..|+.||+..+.+++.++. ++++.
T Consensus 399 isS~~~~~~---------~~~~-----------------------------~~Y~asKaal~~l~~~la~e~~~~gI~vn 440 (520)
T PRK06484 399 LGSIASLLA---------LPPR-----------------------------NAYCASKAAVTMLSRSLACEWAPAGIRVN 440 (520)
T ss_pred ECchhhcCC---------CCCC-----------------------------chhHHHHHHHHHHHHHHHHHhhhhCeEEE
Confidence 999655321 1111 3499999999998877643 79999
Q ss_pred EEecccccCCC
Q psy11859 434 IVRPSIVLPSF 444 (851)
Q Consensus 434 ivRp~~V~G~~ 444 (851)
.|.||.|..+.
T Consensus 441 ~v~PG~v~t~~ 451 (520)
T PRK06484 441 TVAPGYIETPA 451 (520)
T ss_pred EEEeCCccCch
Confidence 99999997764
|
|
| >KOG3623|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.7e-13 Score=147.29 Aligned_cols=82 Identities=30% Similarity=0.405 Sum_probs=70.2
Q ss_pred eeccceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchh
Q psy11859 687 YFFVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDE 766 (851)
Q Consensus 687 ~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~ 766 (851)
++.-+|.|+.|.|.|...+.|-+|+--|+|.|||+| .+|.|+|.++.+|..|+|.|+|||||+|+ .|+|+|+++.+
T Consensus 890 te~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC--~iCkKAFKHKHHLtEHkRLHSGEKPfQCd--KClKRFSHSGS 965 (1007)
T KOG3623|consen 890 TEDGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQC--IICKKAFKHKHHLTEHKRLHSGEKPFQCD--KCLKRFSHSGS 965 (1007)
T ss_pred CccccchHHHHHHHHHhhHHHHHhhhhhcCCCCccc--chhhHhhhhhhhhhhhhhhccCCCcchhh--hhhhhcccccc
Confidence 566678888888888888888888888888888888 78888888888888888888888888887 78888888888
Q ss_pred HHHhhh
Q psy11859 767 LSRHRR 772 (851)
Q Consensus 767 L~~H~r 772 (851)
..+||.
T Consensus 966 YSQHMN 971 (1007)
T KOG3623|consen 966 YSQHMN 971 (1007)
T ss_pred hHhhhc
Confidence 888884
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.1e-11 Score=130.58 Aligned_cols=171 Identities=20% Similarity=0.209 Sum_probs=115.1
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
.|++|+||||||.||++++++|++.| .+|+++.|.... ++++ -+.+....+ ..++..+..|+++
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G---~~Vil~~R~~~~------l~~~-----~~~l~~~~~--~~~~~~~~~Dl~~ 115 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKG---LNLVLVARNPDK------LKDV-----SDSIQSKYS--KTQIKTVVVDFSG 115 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCC---CCEEEEECCHHH------HHHH-----HHHHHHHCC--CcEEEEEEEECCC
Confidence 37899999999999999999999998 578888886432 2211 112222211 1257788899985
Q ss_pred CcCCCCHHHHH---HHhc--CccEEEEccccCC-----c----chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEe
Q psy11859 297 ANLGIKDSDLL---MLQE--EVSVVFNGAASLK-----L----EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHF 359 (851)
Q Consensus 297 ~~lgls~~~~~---~~~~--~vd~ViH~AA~~~-----~----~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~v 359 (851)
.. .+... ..+. ++|++||+||... + .+.++..+++|+.|+..+.+++... .+..++|++
T Consensus 116 ~~----~~~~~~l~~~~~~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~i 191 (320)
T PLN02780 116 DI----DEGVKRIKETIEGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINI 191 (320)
T ss_pred Cc----HHHHHHHHHHhcCCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 21 12222 2333 3669999999752 1 1235578999999999999987532 134689999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..+... ++.|. ...|+.||+..+.+.+..+. |+.+..
T Consensus 192 SS~a~~~~--------~~~p~----------------------------~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~ 235 (320)
T PLN02780 192 GSGAAIVI--------PSDPL----------------------------YAVYAATKAYIDQFSRCLYVEYKKSGIDVQC 235 (320)
T ss_pred echhhccC--------CCCcc----------------------------chHHHHHHHHHHHHHHHHHHHHhccCeEEEE
Confidence 99654311 01111 13499999999988876542 899999
Q ss_pred EecccccCC
Q psy11859 435 VRPSIVLPS 443 (851)
Q Consensus 435 vRp~~V~G~ 443 (851)
+.||.|-.+
T Consensus 236 v~PG~v~T~ 244 (320)
T PLN02780 236 QVPLYVATK 244 (320)
T ss_pred EeeCceecC
Confidence 999987543
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-10 Score=124.14 Aligned_cols=172 Identities=16% Similarity=0.145 Sum_probs=115.4
Q ss_pred cCCCEEEEecCcc--HHHHHHHHHHHHhCCCccEEEEEecCCCCCC-----HHHHHHHHhcChhhHHHhhhCcccCCCeE
Q psy11859 216 YAGRSVLVTGGTG--FMGKVLLEKLLRSCPDIGKVYILCRAKRGLT-----PKARLAEFSKLPVFERLRKECPAQLSRLH 288 (851)
Q Consensus 216 ~~~k~VlVTGatG--FIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~-----~~~rl~~~~~~~~f~~l~~~~~~~~~~v~ 288 (851)
++||+|+|||||| .||.+++++|++.| .+|++..|...... ......+ .-+.+. ....++.
T Consensus 4 l~~k~vlVtGas~~~giG~~~a~~l~~~G---~~vi~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~----~~g~~~~ 71 (256)
T PRK12859 4 LKNKVAVVTGVSRLDGIGAAICKELAEAG---ADIFFTYWTAYDKEMPWGVDQDEQIQ-----LQEELL----KNGVKVS 71 (256)
T ss_pred cCCcEEEEECCCCCCChHHHHHHHHHHCC---CeEEEEecccccccccccccHHHHHH-----HHHHHH----hcCCeEE
Confidence 5789999999996 79999999999998 57777654321110 0111111 001111 1224788
Q ss_pred EEEcCCCCCcCCCCHHHHHHHh-------cCccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHh-cC--
Q psy11859 289 IIEGDILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALK-MK-- 351 (851)
Q Consensus 289 ~v~gDi~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~-~~-- 351 (851)
++.+|+++++ ++..++ ..+|+|||+|+..... +.+...+++|+.|...+..++.. +.
T Consensus 72 ~~~~D~~~~~------~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ 145 (256)
T PRK12859 72 SMELDLTQND------APKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKK 145 (256)
T ss_pred EEEcCCCCHH------HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Confidence 9999999876 555443 2479999999975431 24567799999999988655432 21
Q ss_pred CceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC---
Q psy11859 352 KLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--- 428 (851)
Q Consensus 352 ~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--- 428 (851)
.-.++|++||..+... ..+. ..|+.||+..+.+++..+.
T Consensus 146 ~~g~iv~isS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~l~~~la~~~~ 187 (256)
T PRK12859 146 SGGRIINMTSGQFQGP---------MVGE-----------------------------LAYAATKGAIDALTSSLAAEVA 187 (256)
T ss_pred CCeEEEEEcccccCCC---------CCCc-----------------------------hHHHHHHHHHHHHHHHHHHHhh
Confidence 2358999999654211 1111 3499999999999877643
Q ss_pred --CCCEEEEecccccCC
Q psy11859 429 --KLPVVIVRPSIVLPS 443 (851)
Q Consensus 429 --~l~~~ivRp~~V~G~ 443 (851)
++.+..++||.|-.+
T Consensus 188 ~~~i~v~~v~PG~i~t~ 204 (256)
T PRK12859 188 HLGITVNAINPGPTDTG 204 (256)
T ss_pred hhCeEEEEEEEccccCC
Confidence 799999999988665
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=122.90 Aligned_cols=106 Identities=18% Similarity=0.174 Sum_probs=81.4
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
-+++++|+||||+|+||++++++|++.| .+|+++.|.... ...... + .....+.+|+
T Consensus 11 ~l~~k~~lITGas~gIG~ala~~l~~~G---~~Vi~~~r~~~~-----~~~~~~-------------~--~~~~~~~~D~ 67 (245)
T PRK12367 11 TWQGKRIGITGASGALGKALTKAFRAKG---AKVIGLTHSKIN-----NSESND-------------E--SPNEWIKWEC 67 (245)
T ss_pred hhCCCEEEEEcCCcHHHHHHHHHHHHCC---CEEEEEECCchh-----hhhhhc-------------c--CCCeEEEeeC
Confidence 3678999999999999999999999998 688888886521 111000 0 0125678999
Q ss_pred CCCcCCCCHHHHHHHhcCccEEEEccccCCc----chhHHHHHHHHHHHHHHHHHHHHh
Q psy11859 295 LQANLGIKDSDLLMLQEEVSVVFNGAASLKL----EAELKENVAANTRGTQRLLDIALK 349 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~----~~~~~~~~~~Nv~Gt~~ll~~a~~ 349 (851)
++.+ ++...+.++|++||+||.... .+.+...+++|+.|+.++++++..
T Consensus 68 ~~~~------~~~~~~~~iDilVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~ 120 (245)
T PRK12367 68 GKEE------SLDKQLASLDVLILNHGINPGGRQDPENINKALEINALSSWRLLELFED 120 (245)
T ss_pred CCHH------HHHHhcCCCCEEEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9876 677777889999999997433 245678899999999999998764
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-10 Score=120.93 Aligned_cols=154 Identities=16% Similarity=0.117 Sum_probs=111.0
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|+||||+|.||+.+++.|++.| .+|+++.|... ++.++. ++ .++.++.+|+++++
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g---~~v~~~~r~~~------~~~~~~---------~~-----~~~~~~~~D~~~~~ 57 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDG---HKVTLVGARRD------DLEVAA---------KE-----LDVDAIVCDNTDPA 57 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHHH---------Hh-----ccCcEEecCCCCHH
Confidence 479999999999999999999988 68888888632 221111 00 03567899999876
Q ss_pred CCCCHHHHHHHhc----CccEEEEccccC---------Cc---chhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEeee
Q psy11859 299 LGIKDSDLLMLQE----EVSVVFNGAASL---------KL---EAELKENVAANTRGTQRLLDIALKM-KKLVAFIHFST 361 (851)
Q Consensus 299 lgls~~~~~~~~~----~vd~ViH~AA~~---------~~---~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~vST 361 (851)
++..+++ .+|++||+|+.. .+ .+.+...+++|+.|+.++++++... ..-.++|.+||
T Consensus 58 ------~v~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS 131 (223)
T PRK05884 58 ------SLEEARGLFPHHLDTIVNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVP 131 (223)
T ss_pred ------HHHHHHHHHhhcCcEEEECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEec
Confidence 5555443 689999999742 11 2356678999999999999998652 11257899988
Q ss_pred eeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEe
Q psy11859 362 AFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVR 436 (851)
Q Consensus 362 a~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivR 436 (851)
.. ..+. ..|+.||+.-+.+++.++. ++.+..|.
T Consensus 132 ~~-------------~~~~-----------------------------~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~ 169 (223)
T PRK05884 132 EN-------------PPAG-----------------------------SAEAAIKAALSNWTAGQAAVFGTRGITINAVA 169 (223)
T ss_pred CC-------------CCCc-----------------------------cccHHHHHHHHHHHHHHHHHhhhcCeEEEEEe
Confidence 42 0111 3499999999988876643 78999999
Q ss_pred cccccCC
Q psy11859 437 PSIVLPS 443 (851)
Q Consensus 437 p~~V~G~ 443 (851)
||.|-.+
T Consensus 170 PG~v~t~ 176 (223)
T PRK05884 170 CGRSVQP 176 (223)
T ss_pred cCccCch
Confidence 9988543
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-10 Score=118.51 Aligned_cols=144 Identities=19% Similarity=0.281 Sum_probs=106.1
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|+||||+|.||++++++|++. .+|+++.|+.. .+.+|+++++
T Consensus 1 ~~vlItGas~giG~~la~~l~~~----~~vi~~~r~~~--------------------------------~~~~D~~~~~ 44 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR----HEVITAGRSSG--------------------------------DVQVDITDPA 44 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc----CcEEEEecCCC--------------------------------ceEecCCChH
Confidence 57999999999999999999876 46888877531 2578999876
Q ss_pred CCCCHHHHHHHhc---CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEeeeeeeeCC
Q psy11859 299 LGIKDSDLLMLQE---EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM-KKLVAFIHFSTAFCHPD 367 (851)
Q Consensus 299 lgls~~~~~~~~~---~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~vSTa~~~~~ 367 (851)
++..+++ ++|+|||+||...+ .+.+.+.+++|+.|+.++++++... ..-..|+++||..+..
T Consensus 45 ------~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~- 117 (199)
T PRK07578 45 ------SIRALFEKVGKVDAVVSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDE- 117 (199)
T ss_pred ------HHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCC-
Confidence 5555544 78999999996432 1345677999999999999988652 2235799999865421
Q ss_pred CcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----CCCEEEEecccccC
Q psy11859 368 QKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----KLPVVIVRPSIVLP 442 (851)
Q Consensus 368 ~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----~l~~~ivRp~~V~G 442 (851)
+.|. ..+|+.||+..+.+++.++. ++.+..+.||.|-.
T Consensus 118 ---------~~~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t 159 (199)
T PRK07578 118 ---------PIPG----------------------------GASAATVNGALEGFVKAAALELPRGIRINVVSPTVLTE 159 (199)
T ss_pred ---------CCCC----------------------------chHHHHHHHHHHHHHHHHHHHccCCeEEEEEcCCcccC
Confidence 1111 13499999998888776533 78888899987743
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-10 Score=117.04 Aligned_cols=164 Identities=18% Similarity=0.226 Sum_probs=120.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
.++|.|+|||||+-||..+++.|.+.| .+|.+..|.. +||+++ ..+.++ .++.++..|++
T Consensus 4 ~~~kv~lITGASSGiG~A~A~~l~~~G---~~vvl~aRR~------drL~~l---------a~~~~~--~~~~~~~~DVt 63 (246)
T COG4221 4 LKGKVALITGASSGIGEATARALAEAG---AKVVLAARRE------ERLEAL---------ADEIGA--GAALALALDVT 63 (246)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHHCC---CeEEEEeccH------HHHHHH---------HHhhcc--CceEEEeeccC
Confidence 467999999999999999999999999 7999999975 344332 222222 47889999999
Q ss_pred CCcCCCCHHHHHHH-------hcCccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLML-------QEEVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~-------~~~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..+ +.++|++||.||..... +.|+.++++|+.|..++..+..-. .+--.+|.
T Consensus 64 D~~------~~~~~i~~~~~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN 137 (246)
T COG4221 64 DRA------AVEAAIEALPEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIIN 137 (246)
T ss_pred CHH------HHHHHHHHHHHhhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEE
Confidence 986 43322 34799999999976442 467899999999999998887421 12337899
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+.- +.|. .+.|+.||+..-.+...... ++.++
T Consensus 138 ~~SiAG~~----------~y~~----------------------------~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt 179 (246)
T COG4221 138 LGSIAGRY----------PYPG----------------------------GAVYGATKAAVRAFSLGLRQELAGTGIRVT 179 (246)
T ss_pred eccccccc----------cCCC----------------------------CccchhhHHHHHHHHHHHHHHhcCCCeeEE
Confidence 99965421 1121 25699999998877765543 78888
Q ss_pred EEecccccCC
Q psy11859 434 IVRPSIVLPS 443 (851)
Q Consensus 434 ivRp~~V~G~ 443 (851)
.+-||.|-.+
T Consensus 180 ~I~PG~v~~~ 189 (246)
T COG4221 180 VISPGLVETT 189 (246)
T ss_pred EecCceecce
Confidence 8888887554
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-10 Score=129.12 Aligned_cols=107 Identities=21% Similarity=0.262 Sum_probs=82.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+|+||||+|+||++++++|++.| .+|+++.|.... +.+.. . ....++..+.+|++
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G---~~Vi~l~r~~~~------l~~~~--------~----~~~~~v~~v~~Dvs 234 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQG---AKVVALTSNSDK------ITLEI--------N----GEDLPVKTLHWQVG 234 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCHHH------HHHHH--------h----hcCCCeEEEEeeCC
Confidence 478999999999999999999999988 688888875421 11100 0 01124678899999
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCcc----hhHHHHHHHHHHHHHHHHHHHHh
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKLE----AELKENVAANTRGTQRLLDIALK 349 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~----~~~~~~~~~Nv~Gt~~ll~~a~~ 349 (851)
|++ ++...+.++|++||+||..... +.+.+.+++|+.|+.++++++..
T Consensus 235 d~~------~v~~~l~~IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp 286 (406)
T PRK07424 235 QEA------ALAELLEKVDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFT 286 (406)
T ss_pred CHH------HHHHHhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876 7777788999999999865332 35667899999999999999854
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-10 Score=127.54 Aligned_cols=196 Identities=15% Similarity=0.130 Sum_probs=116.0
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++++|+||||+|.||.++++.|++.|+ .+|+++.|.... ..++. +.+. ....++.++.+|+++
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~--~~V~l~~r~~~~------~~~~~-----~~l~----~~~~~~~~~~~Dl~~ 64 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGE--WHVIMACRDFLK------AEQAA-----KSLG----MPKDSYTIMHLDLGS 64 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC--CEEEEEeCCHHH------HHHHH-----HHhc----CCCCeEEEEEcCCCC
Confidence 468999999999999999999999873 478888886422 11111 1111 112367889999998
Q ss_pred CcCCCCHHHHHHHh-------cCccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHh----cC-CceEE
Q psy11859 297 ANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALK----MK-KLVAF 356 (851)
Q Consensus 297 ~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~----~~-~~~~f 356 (851)
++ ++..++ .++|++||+||.... .+.++..+++|+.|+..+.+++.. .+ +-.++
T Consensus 65 ~~------~v~~~~~~~~~~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~I 138 (314)
T TIGR01289 65 LD------SVRQFVQQFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRL 138 (314)
T ss_pred HH------HHHHHHHHHHHhCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeE
Confidence 86 444332 358999999996421 134567799999998888776643 21 13589
Q ss_pred EEeeeeeeeCCCc--ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh------C
Q psy11859 357 IHFSTAFCHPDQK--VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK------T 428 (851)
Q Consensus 357 V~vSTa~~~~~~~--~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~------~ 428 (851)
|++||..++.... .+. .+.+..++.......... .......... ....|+.||++...+....+ .
T Consensus 139 V~vsS~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~Y~~SK~a~~~~~~~la~~~~~~~ 211 (314)
T TIGR01289 139 IIVGSITGNTNTLAGNVP-----PKANLGDLSGLAAGFKAP-IAMIDGKEFK-GAKAYKDSKVCNMLTVRELHRRFHDET 211 (314)
T ss_pred EEEecCccccccCCCcCC-----CcccccccccccccCCCc-ccccCCCCcc-hhhhHHHhHHHHHHHHHHHHHHhccCC
Confidence 9999976643210 000 000000000000000000 0000000001 12469999999777665543 2
Q ss_pred CCCEEEEecccccC
Q psy11859 429 KLPVVIVRPSIVLP 442 (851)
Q Consensus 429 ~l~~~ivRp~~V~G 442 (851)
++.++.+.||.|..
T Consensus 212 gi~v~~v~PG~v~~ 225 (314)
T TIGR01289 212 GITFASLYPGCIAD 225 (314)
T ss_pred CeEEEEecCCcccC
Confidence 68899999999853
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.8e-10 Score=118.45 Aligned_cols=161 Identities=17% Similarity=0.188 Sum_probs=110.6
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|+||||+|+||+.++++|++.++++ .|.+..|..... ....++.++.+|+++++
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~-~v~~~~~~~~~~-----------------------~~~~~~~~~~~Dls~~~ 56 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDA-TVHATYRHHKPD-----------------------FQHDNVQWHALDVTDEA 56 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCC-EEEEEccCCccc-----------------------cccCceEEEEecCCCHH
Confidence 589999999999999999999987553 566655543210 01237889999999886
Q ss_pred CCCCHHHHHH---HhcCccEEEEccccCCcc-------------hhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEe
Q psy11859 299 LGIKDSDLLM---LQEEVSVVFNGAASLKLE-------------AELKENVAANTRGTQRLLDIALKM---KKLVAFIHF 359 (851)
Q Consensus 299 lgls~~~~~~---~~~~vd~ViH~AA~~~~~-------------~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~v 359 (851)
++.. .+.++|+|||+||..... +.+...+.+|+.|+..+++++... .+..+++.+
T Consensus 57 ------~~~~~~~~~~~id~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~i 130 (235)
T PRK09009 57 ------EIKQLSEQFTQLDWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVI 130 (235)
T ss_pred ------HHHHHHHhcCCCCEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEE
Confidence 4333 345799999999976321 234567899999999988888652 123578888
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-------CCCE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-------KLPV 432 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-------~l~~ 432 (851)
||..+.- .+.. ..+. ..|+.||+..+.+++..+. ++.+
T Consensus 131 ss~~~~~-----~~~~-~~~~-----------------------------~~Y~asK~a~~~~~~~la~e~~~~~~~i~v 175 (235)
T PRK09009 131 SAKVGSI-----SDNR-LGGW-----------------------------YSYRASKAALNMFLKTLSIEWQRSLKHGVV 175 (235)
T ss_pred eeccccc-----ccCC-CCCc-----------------------------chhhhhHHHHHHHHHHHHHHhhcccCCeEE
Confidence 8743210 0000 0111 2499999999998876652 5678
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
..+.||.|-.+.
T Consensus 176 ~~v~PG~v~t~~ 187 (235)
T PRK09009 176 LALHPGTTDTAL 187 (235)
T ss_pred EEEcccceecCC
Confidence 888888876654
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-10 Score=124.45 Aligned_cols=167 Identities=19% Similarity=0.122 Sum_probs=113.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCC---CHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGL---TPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~---~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
+++|++|||||+|.||..++++|++.| .+|++++|..... ...+.+.++ -+.++ ....++.++.+
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G---~~vii~~~~~~~~~~~~~~~~~~~~-----~~~l~----~~~~~~~~~~~ 71 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEG---ARVVVNDIGVGLDGSASGGSAAQAV-----VDEIV----AAGGEAVANGD 71 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEeeCCccccccccchhHHHHH-----HHHHH----hcCCceEEEeC
Confidence 678999999999999999999999998 6788877754110 001122111 11111 11236788999
Q ss_pred CCCCCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc----C---
Q psy11859 293 DILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM----K--- 351 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~--- 351 (851)
|+++++ ++..++ ..+|++||+|+.... .+.+...+++|+.|+..+++++... .
T Consensus 72 Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~ 145 (286)
T PRK07791 72 DIADWD------GAANLVDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAG 145 (286)
T ss_pred CCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccC
Confidence 999876 444332 368999999997532 1456788999999999998887531 0
Q ss_pred --CceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-
Q psy11859 352 --KLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT- 428 (851)
Q Consensus 352 --~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~- 428 (851)
.-.++|++||..+... .|. ...|+.||+..+.+++..+.
T Consensus 146 ~~~~g~Iv~isS~~~~~~----------~~~----------------------------~~~Y~asKaal~~l~~~la~e 187 (286)
T PRK07791 146 RAVDARIINTSSGAGLQG----------SVG----------------------------QGNYSAAKAGIAALTLVAAAE 187 (286)
T ss_pred CCCCcEEEEeCchhhCcC----------CCC----------------------------chhhHHHHHHHHHHHHHHHHH
Confidence 0147999998543211 111 13499999999888876543
Q ss_pred ----CCCEEEEecc
Q psy11859 429 ----KLPVVIVRPS 438 (851)
Q Consensus 429 ----~l~~~ivRp~ 438 (851)
++.+..|.|+
T Consensus 188 l~~~gIrVn~v~Pg 201 (286)
T PRK07791 188 LGRYGVTVNAIAPA 201 (286)
T ss_pred HHHhCeEEEEECCC
Confidence 8999999998
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3e-10 Score=121.20 Aligned_cols=162 Identities=16% Similarity=0.177 Sum_probs=110.0
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+||||||+|.||+.++++|++.| .+|+++.|.... +.+. .+.+.+ ..++.++.+|+++++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G---~~V~~~~r~~~~------~~~~-----~~~l~~-----~~~~~~~~~Dv~d~~ 61 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKG---ARVVISSRNEEN------LEKA-----LKELKE-----YGEVYAVKADLSDKD 61 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcC---CEEEEEeCCHHH------HHHH-----HHHHHh-----cCCceEEEcCCCCHH
Confidence 589999999999999999999998 678888886432 1111 111111 125788999999876
Q ss_pred CCCCHHHHHHHh-------cCccEEEEccccCC-----cc----hhHHHHHHHHHHHHHHHHHHHHh----cCCceEEEE
Q psy11859 299 LGIKDSDLLMLQ-------EEVSVVFNGAASLK-----LE----AELKENVAANTRGTQRLLDIALK----MKKLVAFIH 358 (851)
Q Consensus 299 lgls~~~~~~~~-------~~vd~ViH~AA~~~-----~~----~~~~~~~~~Nv~Gt~~ll~~a~~----~~~~~~fV~ 358 (851)
++..++ .++|+|||+||... +. +.+...+.+|+.++..+..++.. ..+-.++|+
T Consensus 62 ------~~~~~~~~~~~~~g~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~ 135 (259)
T PRK08340 62 ------DLKNLVKEAWELLGGIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVY 135 (259)
T ss_pred ------HHHHHHHHHHHhcCCCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 555444 36899999999643 11 23445678898887665544321 122468999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... ..+. ..|+.||+..+.+.+..+. ++.+.
T Consensus 136 isS~~~~~~---------~~~~-----------------------------~~y~~sKaa~~~~~~~la~e~~~~gI~v~ 177 (259)
T PRK08340 136 LSSVSVKEP---------MPPL-----------------------------VLADVTRAGLVQLAKGVSRTYGGKGIRAY 177 (259)
T ss_pred EeCcccCCC---------CCCc-----------------------------hHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 999654211 1111 2499999999988877643 78888
Q ss_pred EEecccccCC
Q psy11859 434 IVRPSIVLPS 443 (851)
Q Consensus 434 ivRp~~V~G~ 443 (851)
.+.||.|-.+
T Consensus 178 ~v~pG~v~t~ 187 (259)
T PRK08340 178 TVLLGSFDTP 187 (259)
T ss_pred EeccCcccCc
Confidence 8999877554
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.9e-10 Score=120.36 Aligned_cols=167 Identities=16% Similarity=0.142 Sum_probs=116.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+|+||||+|.||..+++.|++.| .+|+++.|.... .+.+. +.+... ...++.++.+|++
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~--------~~l~~~---~~~~~~~~~~D~~ 67 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEG---CHLHLVARDADA---LEALA--------ADLRAA---HGVDVAVHALDLS 67 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcC---CEEEEEeCCHHH---HHHHH--------HHHHhh---cCCceEEEEecCC
Confidence 468999999999999999999999987 688999886421 11111 111111 1236889999999
Q ss_pred CCcCCCCHHHHHHHh---cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEeeee
Q psy11859 296 QANLGIKDSDLLMLQ---EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHFSTA 362 (851)
Q Consensus 296 ~~~lgls~~~~~~~~---~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~vSTa 362 (851)
+++ ++..++ ..+|+|||+|+.... .+.+...+++|+.|...+++++... .+-.++|++||.
T Consensus 68 ~~~------~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~ 141 (259)
T PRK06125 68 SPE------AREQLAAEAGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGA 141 (259)
T ss_pred CHH------HHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCc
Confidence 876 555444 469999999996432 1356678999999999998877421 112478888885
Q ss_pred eeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEec
Q psy11859 363 FCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVRP 437 (851)
Q Consensus 363 ~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivRp 437 (851)
.... +..+. ..|+.+|..-+.+++..+. ++.+..+.|
T Consensus 142 ~~~~---------~~~~~-----------------------------~~y~ask~al~~~~~~la~e~~~~gi~v~~i~P 183 (259)
T PRK06125 142 AGEN---------PDADY-----------------------------ICGSAGNAALMAFTRALGGKSLDDGVRVVGVNP 183 (259)
T ss_pred cccC---------CCCCc-----------------------------hHhHHHHHHHHHHHHHHHHHhCccCeEEEEEec
Confidence 3311 01111 2389999999888876542 899999999
Q ss_pred ccccCC
Q psy11859 438 SIVLPS 443 (851)
Q Consensus 438 ~~V~G~ 443 (851)
|.|-.+
T Consensus 184 G~v~t~ 189 (259)
T PRK06125 184 GPVATD 189 (259)
T ss_pred CccccH
Confidence 888755
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-10 Score=122.56 Aligned_cols=164 Identities=17% Similarity=0.158 Sum_probs=111.4
Q ss_pred EEEEecCccHHHHHHHHHHHH----hCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLR----SCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~----~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
.||||||+|.||.+++++|++ .| ..|+++.|.... +.++ -+.++...+ ..++.++.+|++
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g---~~V~~~~r~~~~------~~~~-----~~~l~~~~~--~~~v~~~~~Dl~ 65 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPG---SVLVLSARNDEA------LRQL-----KAEIGAERS--GLRVVRVSLDLG 65 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCC---cEEEEEEcCHHH------HHHH-----HHHHHhcCC--CceEEEEEeccC
Confidence 589999999999999999997 45 688888886432 2111 111221111 236888999999
Q ss_pred CCcCCCCHHHHHHHhcC-----------ccEEEEccccCCc----------chhHHHHHHHHHHHHHHHHHHHHhc----
Q psy11859 296 QANLGIKDSDLLMLQEE-----------VSVVFNGAASLKL----------EAELKENVAANTRGTQRLLDIALKM---- 350 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~-----------vd~ViH~AA~~~~----------~~~~~~~~~~Nv~Gt~~ll~~a~~~---- 350 (851)
+++ ++..+++. .|+|||+||.... .+.+...+++|+.|+..+.+++...
T Consensus 66 ~~~------~v~~~~~~~~~~~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~ 139 (256)
T TIGR01500 66 AEA------GLEQLLKALRELPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDS 139 (256)
T ss_pred CHH------HHHHHHHHHHhccccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhc
Confidence 876 55444321 2699999986321 1345678999999998888777542
Q ss_pred -CCceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-
Q psy11859 351 -KKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT- 428 (851)
Q Consensus 351 -~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~- 428 (851)
+.-.++|++||..+.. +.|.. ..|+.||+..+.+++.++.
T Consensus 140 ~~~~~~iv~isS~~~~~----------~~~~~----------------------------~~Y~asKaal~~l~~~la~e 181 (256)
T TIGR01500 140 PGLNRTVVNISSLCAIQ----------PFKGW----------------------------ALYCAGKAARDMLFQVLALE 181 (256)
T ss_pred CCCCCEEEEECCHHhCC----------CCCCc----------------------------hHHHHHHHHHHHHHHHHHHH
Confidence 1124799999964421 11111 2499999999998876542
Q ss_pred ----CCCEEEEecccccCC
Q psy11859 429 ----KLPVVIVRPSIVLPS 443 (851)
Q Consensus 429 ----~l~~~ivRp~~V~G~ 443 (851)
++.+..+.||.|-.+
T Consensus 182 ~~~~~i~v~~v~PG~v~T~ 200 (256)
T TIGR01500 182 EKNPNVRVLNYAPGVLDTD 200 (256)
T ss_pred hcCCCeEEEEecCCcccch
Confidence 788999999988654
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >KOG3623|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.6e-12 Score=142.47 Aligned_cols=75 Identities=33% Similarity=0.639 Sum_probs=70.3
Q ss_pred CCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCCCCcccccc
Q psy11859 715 NLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLLAI 793 (851)
Q Consensus 715 ~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~Cgk~f~~~~ 793 (851)
+..-+|.| ..|+|.|...++|.+|.--|+|.+||+|. .|.|+|+++.+|..|+|.|.|||||+|+.|+|+|....
T Consensus 890 te~gmyaC--DqCDK~FqKqSSLaRHKYEHsGqRPyqC~--iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSG 964 (1007)
T KOG3623|consen 890 TEDGMYAC--DQCDKAFQKQSSLARHKYEHSGQRPYQCI--ICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSG 964 (1007)
T ss_pred CccccchH--HHHHHHHHhhHHHHHhhhhhcCCCCcccc--hhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhccccc
Confidence 44568999 89999999999999999999999999998 99999999999999999999999999999999997554
|
|
| >KOG3576|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.1e-12 Score=124.19 Aligned_cols=98 Identities=19% Similarity=0.321 Sum_probs=87.2
Q ss_pred CCCCCceeeeeccceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHh-hhc----------C
Q psy11859 678 QIRSNRFWHYFFVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLR-RHS----------G 746 (851)
Q Consensus 678 ~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~-~H~----------g 746 (851)
-|+.|+++|+..+.+.|..|+|+|+.--+|++|+++|+|.|||+| ..|+|+|+++-+|..|.+ +|. .
T Consensus 132 mlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc--~~c~kaftqrcsleshl~kvhgv~~~yaykerr 209 (267)
T KOG3576|consen 132 MLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKC--SLCEKAFTQRCSLESHLKKVHGVQHQYAYKERR 209 (267)
T ss_pred HHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccch--hhhhHHHHhhccHHHHHHHHcCchHHHHHHHhh
Confidence 467899999999999999999999999999999999999999999 899999999999999986 442 2
Q ss_pred CCccccCccccCccccCchhHHHhhhhcCCCCC
Q psy11859 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779 (851)
Q Consensus 747 ekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp 779 (851)
+|-|.|+ +||..-.....+..|...|+...|
T Consensus 210 ~kl~vce--dcg~t~~~~e~~~~h~~~~hp~Sp 240 (267)
T KOG3576|consen 210 AKLYVCE--DCGYTSERPEVYYLHLKLHHPFSP 240 (267)
T ss_pred hheeeec--ccCCCCCChhHHHHHHHhcCCCCH
Confidence 4679998 999998888889999998875444
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.2e-12 Score=144.49 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=56.8
Q ss_pred ccccccccCceEecCccHHHHHhcCCccc---ccccccccCCCCHHHHHHH-HHhHHhhhhcC
Q psy11859 2 HLLEYFTTRNWDFKNKRLLALHDNISEKD---KQTFYIANIDVNIDDYLKT-IILGARQYCLK 60 (851)
Q Consensus 2 ~~l~~F~~~~W~f~~~n~~~l~~~l~~~d---~~~F~~d~~~~~w~~y~~~-~~~G~r~yl~k 60 (851)
++++||++++|.|+|+|+++||+.|+++| |++|+||++.+||++||.+ |+.|+|+||+|
T Consensus 429 ~~~~~f~~~~w~f~~~n~~~l~~~~~~~d~~d~~~f~~d~~~~~w~~y~~~~~~~g~~~y~~k 491 (491)
T PLN02996 429 DLYKPYVFFKGIFDDTNTEKLRIKRKETGKEEADMFDFDPKSIDWEDYMTNVHIPGLVKYVLK 491 (491)
T ss_pred HHhhccccceEEEccHHHHHHHHHCCccccccccEeccCcccCCHHHHHHHhhHHHHHHHhcC
Confidence 57899999999999999999999999955 9999999999999999999 99999999997
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.5e-10 Score=134.59 Aligned_cols=164 Identities=20% Similarity=0.199 Sum_probs=118.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
.++|+|+||||+|.||..+++.|++.| .+|+++.|.... +.++. .+ ...++.++.+|++
T Consensus 3 ~~~k~~lITGas~gIG~aia~~l~~~G---~~V~~~~r~~~~------~~~~~---------~~---~~~~~~~~~~D~~ 61 (520)
T PRK06484 3 AQSRVVLVTGAAGGIGRAACQRFARAG---DQVVVADRNVER------ARERA---------DS---LGPDHHALAMDVS 61 (520)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH------HHHHH---------HH---hCCceeEEEeccC
Confidence 368999999999999999999999998 688888886432 21111 00 1135678999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCC-----c----chhHHHHHHHHHHHHHHHHHHHHhc----CCceE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLK-----L----EAELKENVAANTRGTQRLLDIALKM----KKLVA 355 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~-----~----~~~~~~~~~~Nv~Gt~~ll~~a~~~----~~~~~ 355 (851)
+++ ++..++ ..+|+|||+||... + .+.++..+++|+.|+..+++++... +.-.+
T Consensus 62 ~~~------~~~~~~~~~~~~~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~ 135 (520)
T PRK06484 62 DEA------QIREGFEQLHREFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAA 135 (520)
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCe
Confidence 886 555443 35899999998631 1 2356788999999999999888753 21138
Q ss_pred EEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CC
Q psy11859 356 FIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KL 430 (851)
Q Consensus 356 fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l 430 (851)
+|++||..+... .|. ...|+.||+..+.+++..+. ++
T Consensus 136 iv~isS~~~~~~----------~~~----------------------------~~~Y~asKaal~~l~~~la~e~~~~~i 177 (520)
T PRK06484 136 IVNVASGAGLVA----------LPK----------------------------RTAYSASKAAVISLTRSLACEWAAKGI 177 (520)
T ss_pred EEEECCcccCCC----------CCC----------------------------CchHHHHHHHHHHHHHHHHHHhhhhCe
Confidence 999999644321 111 13499999999998876543 79
Q ss_pred CEEEEecccccCCC
Q psy11859 431 PVVIVRPSIVLPSF 444 (851)
Q Consensus 431 ~~~ivRp~~V~G~~ 444 (851)
.++.+.||.|-.+.
T Consensus 178 ~v~~i~Pg~v~t~~ 191 (520)
T PRK06484 178 RVNAVLPGYVRTQM 191 (520)
T ss_pred EEEEEccCCcCchh
Confidence 99999999886553
|
|
| >KOG1205|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.2e-10 Score=119.58 Aligned_cols=155 Identities=24% Similarity=0.324 Sum_probs=113.4
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
+.+.||+|+||||+.=||.+|+.+|.+.| .+++++.|..... +++. +.+++..+.. ++.++.+|
T Consensus 8 e~~~~kvVvITGASsGIG~~lA~~la~~G---~~l~lvar~~rrl---~~v~--------~~l~~~~~~~--~v~~~~~D 71 (282)
T KOG1205|consen 8 ERLAGKVVLITGASSGIGEALAYELAKRG---AKLVLVARRARRL---ERVA--------EELRKLGSLE--KVLVLQLD 71 (282)
T ss_pred HHhCCCEEEEeCCCcHHHHHHHHHHHhCC---CceEEeehhhhhH---HHHH--------HHHHHhCCcC--ccEEEeCc
Confidence 45789999999999999999999999998 7788888876432 2321 1233333333 79999999
Q ss_pred CCCCcCCCCHHHHHH-------HhcCccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhc-C--CceEE
Q psy11859 294 ILQANLGIKDSDLLM-------LQEEVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKM-K--KLVAF 356 (851)
Q Consensus 294 i~~~~lgls~~~~~~-------~~~~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~-~--~~~~f 356 (851)
++|.+ +... .+.++|+.||.||..... +..+..+++|+.|+..+.++|... . +--++
T Consensus 72 vs~~~------~~~~~~~~~~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhI 145 (282)
T KOG1205|consen 72 VSDEE------SVKKFVEWAIRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHI 145 (282)
T ss_pred cCCHH------HHHHHHHHHHHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeE
Confidence 99987 5553 345899999999987532 244568999999999999988642 1 12579
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT 428 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~ 428 (851)
|.+||+.+.- +.|.. ..|.+||.+-+.+...+..
T Consensus 146 VvisSiaG~~----------~~P~~----------------------------~~Y~ASK~Al~~f~etLR~ 179 (282)
T KOG1205|consen 146 VVISSIAGKM----------PLPFR----------------------------SIYSASKHALEGFFETLRQ 179 (282)
T ss_pred EEEecccccc----------CCCcc----------------------------cccchHHHHHHHHHHHHHH
Confidence 9999976542 22222 1399999999988877654
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.2e-10 Score=117.85 Aligned_cols=167 Identities=10% Similarity=-0.002 Sum_probs=116.6
Q ss_pred cCCCEEEEecCc--cHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 216 YAGRSVLVTGGT--GFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 216 ~~~k~VlVTGat--GFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
++||+++||||+ +=||..++++|++.| .+|++..|..+.. ++++++ .++.+ ..++.++.+|
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G---~~v~~~~r~~~~~---~~~~~~---------~~~~~--~~~~~~~~~D 67 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAG---AKLVFTYAGERLE---KEVREL---------ADTLE--GQESLLLPCD 67 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCC---CEEEEecCcccch---HHHHHH---------HHHcC--CCceEEEecC
Confidence 468999999998 899999999999998 6788887754322 223222 11111 1368889999
Q ss_pred CCCCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------c----hhHHHHHHHHHHHHHHHHHHHHhc-CCce
Q psy11859 294 ILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------E----AELKENVAANTRGTQRLLDIALKM-KKLV 354 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~----~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~ 354 (851)
++|++ +++.++ .++|++||+|+.... . +.+...+++|+.|+..+++++... ..--
T Consensus 68 v~d~~------~v~~~~~~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g 141 (257)
T PRK08594 68 VTSDE------EITACFETIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGG 141 (257)
T ss_pred CCCHH------HHHHHHHHHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCc
Confidence 99886 444433 358999999986421 1 234567899999999888877642 1124
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~ 429 (851)
++|++||..+.. +.|. ...|+.||+..+.+.+..+. +
T Consensus 142 ~Iv~isS~~~~~----------~~~~----------------------------~~~Y~asKaal~~l~~~la~el~~~g 183 (257)
T PRK08594 142 SIVTLTYLGGER----------VVQN----------------------------YNVMGVAKASLEASVKYLANDLGKDG 183 (257)
T ss_pred eEEEEcccCCcc----------CCCC----------------------------CchhHHHHHHHHHHHHHHHHHhhhcC
Confidence 799999864321 1111 12499999999988876543 7
Q ss_pred CCEEEEecccccCC
Q psy11859 430 LPVVIVRPSIVLPS 443 (851)
Q Consensus 430 l~~~ivRp~~V~G~ 443 (851)
+.+..|.||.|-.+
T Consensus 184 Irvn~v~PG~v~T~ 197 (257)
T PRK08594 184 IRVNAISAGPIRTL 197 (257)
T ss_pred CEEeeeecCcccCH
Confidence 99999999988654
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.8e-10 Score=119.70 Aligned_cols=168 Identities=11% Similarity=0.067 Sum_probs=116.2
Q ss_pred cCCCEEEEecCc--cHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 216 YAGRSVLVTGGT--GFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 216 ~~~k~VlVTGat--GFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
++||+|+||||+ +=||..++++|++.| .+|++..|........+.+.++ .+. ..++.++..|
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G---~~v~~~~~~~~~~~~~~~~~~~---------~~~----~~~~~~~~~D 67 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAG---AELGITYLPDEKGRFEKKVREL---------TEP----LNPSLFLPCD 67 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCC---CEEEEEecCcccchHHHHHHHH---------Hhc----cCcceEeecC
Confidence 468999999986 789999999999998 6777776654321122233222 111 1246688999
Q ss_pred CCCCcCCCCHHHHHHHh-------cCccEEEEccccCC-------cc----hhHHHHHHHHHHHHHHHHHHHHhc-CCce
Q psy11859 294 ILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLK-------LE----AELKENVAANTRGTQRLLDIALKM-KKLV 354 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~-------~~----~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~ 354 (851)
++|++ ++..++ .++|++||+|+... +. +.++..+++|+.|+..+.+++... ..-.
T Consensus 68 l~d~~------~v~~~~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g 141 (258)
T PRK07370 68 VQDDA------QIEETFETIKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGG 141 (258)
T ss_pred cCCHH------HHHHHHHHHHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCC
Confidence 99986 554433 36899999999642 21 345678999999999998887532 1125
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~ 429 (851)
++|++||..+.. +.|. ...|+.||+..+.+.+..+. +
T Consensus 142 ~Iv~isS~~~~~----------~~~~----------------------------~~~Y~asKaal~~l~~~la~el~~~g 183 (258)
T PRK07370 142 SIVTLTYLGGVR----------AIPN----------------------------YNVMGVAKAALEASVRYLAAELGPKN 183 (258)
T ss_pred eEEEEecccccc----------CCcc----------------------------cchhhHHHHHHHHHHHHHHHHhCcCC
Confidence 799999854321 1111 13499999999988876643 7
Q ss_pred CCEEEEecccccCC
Q psy11859 430 LPVVIVRPSIVLPS 443 (851)
Q Consensus 430 l~~~ivRp~~V~G~ 443 (851)
+.+..+.||.|-.+
T Consensus 184 I~Vn~i~PG~v~T~ 197 (258)
T PRK07370 184 IRVNAISAGPIRTL 197 (258)
T ss_pred eEEEEEecCcccCc
Confidence 89999999988654
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.5e-10 Score=115.97 Aligned_cols=168 Identities=23% Similarity=0.310 Sum_probs=118.9
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
..++++++||||||=||..++++|.++| +.|+++.|.+. |+.++ .+.|... ..-.+.++..|+
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g---~~liLvaR~~~------kL~~l-----a~~l~~~---~~v~v~vi~~DL 65 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRG---YNLILVARRED------KLEAL-----AKELEDK---TGVEVEVIPADL 65 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCcHH------HHHHH-----HHHHHHh---hCceEEEEECcC
Confidence 3578899999999999999999999999 78999999764 33222 1122221 123678999999
Q ss_pred CCCcCCCCHHHHHHHhc-------CccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHh-c--CCceEEE
Q psy11859 295 LQANLGIKDSDLLMLQE-------EVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALK-M--KKLVAFI 357 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~-~--~~~~~fV 357 (851)
++++ ++..+.. .+|+.|++||...+. +...+.+++|+.++..|-.+... + .+--.+|
T Consensus 66 s~~~------~~~~l~~~l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~Ii 139 (265)
T COG0300 66 SDPE------ALERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHII 139 (265)
T ss_pred CChh------HHHHHHHHHHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 9997 5555442 599999999987653 23457899999999888776643 1 1134699
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHH----HHHHHHHhC-CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLT----ETLVDEYKT-KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~a----E~~v~~~~~-~l~~ 432 (851)
.++|..++- |.|.. .+|+.||+.- |.+=.+... |+.|
T Consensus 140 NI~S~ag~~----------p~p~~----------------------------avY~ATKa~v~~fSeaL~~EL~~~gV~V 181 (265)
T COG0300 140 NIGSAAGLI----------PTPYM----------------------------AVYSATKAFVLSFSEALREELKGTGVKV 181 (265)
T ss_pred EEechhhcC----------CCcch----------------------------HHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 999976643 22322 4599999865 443344443 8889
Q ss_pred EEEecccccCC
Q psy11859 433 VIVRPSIVLPS 443 (851)
Q Consensus 433 ~ivRp~~V~G~ 443 (851)
..|-||.|.-+
T Consensus 182 ~~v~PG~~~T~ 192 (265)
T COG0300 182 TAVCPGPTRTE 192 (265)
T ss_pred EEEecCccccc
Confidence 99988876544
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.1e-10 Score=117.12 Aligned_cols=163 Identities=12% Similarity=0.057 Sum_probs=115.8
Q ss_pred cCCCEEEEecCc--cHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 216 YAGRSVLVTGGT--GFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 216 ~~~k~VlVTGat--GFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
++||+|+||||+ +=||..++++|++.| .+|++..|..+ ..+.+.++ . ..++.++.+|
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G---~~Vi~~~r~~~---~~~~~~~~---------~------~~~~~~~~~D 63 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQG---ATVIYTYQNDR---MKKSLQKL---------V------DEEDLLVECD 63 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCC---CEEEEecCchH---HHHHHHhh---------c------cCceeEEeCC
Confidence 578999999999 789999999999998 67888877521 12222111 0 1257889999
Q ss_pred CCCCcCCCCHHHHHHHh-------cCccEEEEccccCCc-----------chhHHHHHHHHHHHHHHHHHHHHhc-CCce
Q psy11859 294 ILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-----------EAELKENVAANTRGTQRLLDIALKM-KKLV 354 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-----------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~ 354 (851)
+++++ +++.++ .++|++||+|+.... .+.++..+++|+.|+..+.+++... .+-.
T Consensus 64 l~~~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g 137 (252)
T PRK06079 64 VASDE------SIERAFATIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGA 137 (252)
T ss_pred CCCHH------HHHHHHHHHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCc
Confidence 99876 544432 358999999996431 1346677999999999998887643 1224
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~ 429 (851)
++|++||..+.. +.|. ...|+.||+.-+.+.+..+. +
T Consensus 138 ~Iv~iss~~~~~----------~~~~----------------------------~~~Y~asKaal~~l~~~la~el~~~g 179 (252)
T PRK06079 138 SIVTLTYFGSER----------AIPN----------------------------YNVMGIAKAALESSVRYLARDLGKKG 179 (252)
T ss_pred eEEEEeccCccc----------cCCc----------------------------chhhHHHHHHHHHHHHHHHHHhhhcC
Confidence 788888853311 1111 13499999999998876543 7
Q ss_pred CCEEEEecccccCC
Q psy11859 430 LPVVIVRPSIVLPS 443 (851)
Q Consensus 430 l~~~ivRp~~V~G~ 443 (851)
+.+..|.||.|-.+
T Consensus 180 I~vn~i~PG~v~T~ 193 (252)
T PRK06079 180 IRVNAISAGAVKTL 193 (252)
T ss_pred cEEEEEecCccccc
Confidence 99999999988654
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-09 Score=118.23 Aligned_cols=167 Identities=10% Similarity=0.045 Sum_probs=116.5
Q ss_pred hhcCCCEEEEecCc--cHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEE
Q psy11859 214 RWYAGRSVLVTGGT--GFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIE 291 (851)
Q Consensus 214 ~~~~~k~VlVTGat--GFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~ 291 (851)
..+++|++|||||+ +=||..+++.|++.| .+|++..|... ..++++++. ++. ..+.++.
T Consensus 6 ~~~~~k~~lItGas~~~GIG~aia~~la~~G---~~V~l~~r~~~---~~~~~~~l~---------~~~----~~~~~~~ 66 (272)
T PRK08159 6 GLMAGKRGLILGVANNRSIAWGIAKACRAAG---AELAFTYQGDA---LKKRVEPLA---------AEL----GAFVAGH 66 (272)
T ss_pred ccccCCEEEEECCCCCCcHHHHHHHHHHHCC---CEEEEEcCchH---HHHHHHHHH---------Hhc----CCceEEe
Confidence 45688999999997 789999999999998 67877766421 123333221 111 1345789
Q ss_pred cCCCCCcCCCCHHHHHHHh-------cCccEEEEccccCCc-----------chhHHHHHHHHHHHHHHHHHHHHhc-CC
Q psy11859 292 GDILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-----------EAELKENVAANTRGTQRLLDIALKM-KK 352 (851)
Q Consensus 292 gDi~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-----------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~ 352 (851)
+|+++++ +++.++ ..+|++||+|+.... .+.+...+++|+.|+..+++++... .+
T Consensus 67 ~Dl~~~~------~v~~~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~ 140 (272)
T PRK08159 67 CDVTDEA------SIDAVFETLEKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTD 140 (272)
T ss_pred cCCCCHH------HHHHHHHHHHHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCC
Confidence 9999876 555443 358999999996531 1356678999999999999987653 22
Q ss_pred ceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----
Q psy11859 353 LVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT---- 428 (851)
Q Consensus 353 ~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~---- 428 (851)
-.++|++||..+.. +.|. ...|+.||+.-+.+++..+.
T Consensus 141 ~g~Iv~iss~~~~~----------~~p~----------------------------~~~Y~asKaal~~l~~~la~el~~ 182 (272)
T PRK08159 141 GGSILTLTYYGAEK----------VMPH----------------------------YNVMGVAKAALEASVKYLAVDLGP 182 (272)
T ss_pred CceEEEEecccccc----------CCCc----------------------------chhhhhHHHHHHHHHHHHHHHhcc
Confidence 25788888843211 1111 13499999998888876533
Q ss_pred -CCCEEEEecccccCC
Q psy11859 429 -KLPVVIVRPSIVLPS 443 (851)
Q Consensus 429 -~l~~~ivRp~~V~G~ 443 (851)
++.+..+.||.|-.+
T Consensus 183 ~gIrVn~v~PG~v~T~ 198 (272)
T PRK08159 183 KNIRVNAISAGPIKTL 198 (272)
T ss_pred cCeEEEEeecCCcCCH
Confidence 799999999988654
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-09 Score=116.45 Aligned_cols=165 Identities=11% Similarity=0.045 Sum_probs=114.7
Q ss_pred cCCCEEEEecCc--cHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 216 YAGRSVLVTGGT--GFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 216 ~~~k~VlVTGat--GFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
++||+|+||||+ +=||..++++|++.| .+|++..|.... .+.+.++ .++. ..+.++.+|
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G---~~v~l~~r~~~~---~~~~~~~---------~~~~----~~~~~~~~D 68 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALG---AELAVTYLNDKA---RPYVEPL---------AEEL----DAPIFLPLD 68 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcC---CEEEEEeCChhh---HHHHHHH---------HHhh----ccceEEecC
Confidence 478999999998 489999999999998 678888886432 1222221 1111 134578999
Q ss_pred CCCCcCCCCHHHHHHHh-------cCccEEEEccccCCc-----------chhHHHHHHHHHHHHHHHHHHHHhc-CCce
Q psy11859 294 ILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-----------EAELKENVAANTRGTQRLLDIALKM-KKLV 354 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-----------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~ 354 (851)
+++++ ++..++ ..+|++||+||.... .+.+...+++|+.|+..+.+++... ..-.
T Consensus 69 ~~~~~------~v~~~~~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g 142 (258)
T PRK07533 69 VREPG------QLEAVFARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGG 142 (258)
T ss_pred cCCHH------HHHHHHHHHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCC
Confidence 99886 554433 358999999986431 1346678999999999999987542 1114
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~ 429 (851)
++|++||..+.. +.|. ...|+.||+..+.+.+..+. +
T Consensus 143 ~Ii~iss~~~~~----------~~~~----------------------------~~~Y~asKaal~~l~~~la~el~~~g 184 (258)
T PRK07533 143 SLLTMSYYGAEK----------VVEN----------------------------YNLMGPVKAALESSVRYLAAELGPKG 184 (258)
T ss_pred EEEEEecccccc----------CCcc----------------------------chhhHHHHHHHHHHHHHHHHHhhhcC
Confidence 688888853311 1111 13499999998888876543 7
Q ss_pred CCEEEEecccccCC
Q psy11859 430 LPVVIVRPSIVLPS 443 (851)
Q Consensus 430 l~~~ivRp~~V~G~ 443 (851)
+.+..+.||.|-.+
T Consensus 185 I~Vn~v~PG~v~T~ 198 (258)
T PRK07533 185 IRVHAISPGPLKTR 198 (258)
T ss_pred cEEEEEecCCcCCh
Confidence 89999999988654
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.7e-10 Score=117.94 Aligned_cols=166 Identities=10% Similarity=0.072 Sum_probs=113.2
Q ss_pred hcCCCEEEEecC--ccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 215 WYAGRSVLVTGG--TGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 215 ~~~~k~VlVTGa--tGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
++++|+|+|||| ++-||+.+++.|++.| .+|++..|..+ ..+.++++. .+. .....+.+
T Consensus 3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G---~~v~~~~~~~~---~~~~~~~~~---------~~~----~~~~~~~~ 63 (261)
T PRK08690 3 FLQGKKILITGMISERSIAYGIAKACREQG---AELAFTYVVDK---LEERVRKMA---------AEL----DSELVFRC 63 (261)
T ss_pred ccCCcEEEEECCCCCCcHHHHHHHHHHHCC---CEEEEEcCcHH---HHHHHHHHH---------hcc----CCceEEEC
Confidence 367899999997 6699999999999998 67777666422 122232221 111 13457899
Q ss_pred CCCCCcCCCCHHHHHHHh-------cCccEEEEccccCCc--------c----hhHHHHHHHHHHHHHHHHHHHHhc--C
Q psy11859 293 DILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL--------E----AELKENVAANTRGTQRLLDIALKM--K 351 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~--------~----~~~~~~~~~Nv~Gt~~ll~~a~~~--~ 351 (851)
|++|++ +++.++ .++|++||+||.... + +.++..+++|+.|+..+.+++... .
T Consensus 64 Dv~~~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~ 137 (261)
T PRK08690 64 DVASDD------EINQVFADLGKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRG 137 (261)
T ss_pred CCCCHH------HHHHHHHHHHHHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhh
Confidence 999986 555443 368999999997531 1 234566889999998888876532 1
Q ss_pred CceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----
Q psy11859 352 KLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK---- 427 (851)
Q Consensus 352 ~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~---- 427 (851)
+-.++|++||..+.. +.|. -..|+.||+..+.+.+..+
T Consensus 138 ~~g~Iv~iss~~~~~----------~~~~----------------------------~~~Y~asKaal~~l~~~la~e~~ 179 (261)
T PRK08690 138 RNSAIVALSYLGAVR----------AIPN----------------------------YNVMGMAKASLEAGIRFTAACLG 179 (261)
T ss_pred cCcEEEEEccccccc----------CCCC----------------------------cccchhHHHHHHHHHHHHHHHhh
Confidence 124788988854321 1111 1349999999988876653
Q ss_pred C-CCCEEEEecccccCC
Q psy11859 428 T-KLPVVIVRPSIVLPS 443 (851)
Q Consensus 428 ~-~l~~~ivRp~~V~G~ 443 (851)
+ ++.+..+.||.|-.+
T Consensus 180 ~~gIrVn~i~PG~v~T~ 196 (261)
T PRK08690 180 KEGIRCNGISAGPIKTL 196 (261)
T ss_pred hcCeEEEEEecCcccch
Confidence 2 899999999988654
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=117.85 Aligned_cols=166 Identities=10% Similarity=0.067 Sum_probs=114.9
Q ss_pred cCCCEEEEecCcc--HHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 216 YAGRSVLVTGGTG--FMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 216 ~~~k~VlVTGatG--FIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
+++|++|||||++ -||+.++++|++.| .+|++..|... ..+++.++. ++. ....++.+|
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~G---a~V~~~~r~~~---~~~~~~~~~---------~~~----g~~~~~~~D 65 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQG---AELAFTYQGEA---LGKRVKPLA---------ESL----GSDFVLPCD 65 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCC---CEEEEecCchH---HHHHHHHHH---------Hhc----CCceEEeCC
Confidence 5789999999996 89999999999998 67888777532 122222221 111 123468999
Q ss_pred CCCCcCCCCHHHHHHHh-------cCccEEEEccccCC-------c----chhHHHHHHHHHHHHHHHHHHHHh-cCCce
Q psy11859 294 ILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLK-------L----EAELKENVAANTRGTQRLLDIALK-MKKLV 354 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~-------~----~~~~~~~~~~Nv~Gt~~ll~~a~~-~~~~~ 354 (851)
++|++ ++..++ ..+|++||+||... + .+.++..+++|+.|+.++++++.. +..-.
T Consensus 66 v~d~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G 139 (271)
T PRK06505 66 VEDIA------SVDAVFEALEKKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGG 139 (271)
T ss_pred CCCHH------HHHHHHHHHHHHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCc
Confidence 99986 554443 36899999999643 1 134667799999999999887753 21114
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~ 429 (851)
++|++||..+.. +.|. ...|+.||+..+.+.+..+. +
T Consensus 140 ~Iv~isS~~~~~----------~~~~----------------------------~~~Y~asKaAl~~l~r~la~el~~~g 181 (271)
T PRK06505 140 SMLTLTYGGSTR----------VMPN----------------------------YNVMGVAKAALEASVRYLAADYGPQG 181 (271)
T ss_pred eEEEEcCCCccc----------cCCc----------------------------cchhhhhHHHHHHHHHHHHHHHhhcC
Confidence 789998854321 1111 12499999998888766543 7
Q ss_pred CCEEEEecccccCCC
Q psy11859 430 LPVVIVRPSIVLPSF 444 (851)
Q Consensus 430 l~~~ivRp~~V~G~~ 444 (851)
+.+..|.||.|-.+.
T Consensus 182 IrVn~v~PG~i~T~~ 196 (271)
T PRK06505 182 IRVNAISAGPVRTLA 196 (271)
T ss_pred eEEEEEecCCccccc
Confidence 999999999887653
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-09 Score=107.65 Aligned_cols=149 Identities=22% Similarity=0.274 Sum_probs=110.6
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|+||||+|=||..+++.|++.|. ..|+++.|+ ...++..++ .+.++ ....++.++++|+++++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~--~~v~~~~r~----~~~~~~~~l-----~~~l~----~~~~~~~~~~~D~~~~~ 65 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGA--RVVILTSRS----EDSEGAQEL-----IQELK----APGAKITFIECDLSDPE 65 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTT--EEEEEEESS----CHHHHHHHH-----HHHHH----HTTSEEEEEESETTSHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCc--eEEEEeeec----ccccccccc-----ccccc----ccccccccccccccccc
Confidence 6899999999999999999999953 678888887 222333222 11222 22368999999999876
Q ss_pred CCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeee
Q psy11859 299 LGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFC 364 (851)
Q Consensus 299 lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~ 364 (851)
++..+++ .+|+|||+|+.... .+.+...+++|+.+...+.+++... +-..+|++||..+
T Consensus 66 ------~~~~~~~~~~~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~-~~g~iv~~sS~~~ 138 (167)
T PF00106_consen 66 ------SIRALIEEVIKRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQ-GGGKIVNISSIAG 138 (167)
T ss_dssp ------HHHHHHHHHHHHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHH-TTEEEEEEEEGGG
T ss_pred ------cccccccccccccccccccccccccccccccccccchhhhhccccccceeeeeeehheec-cccceEEecchhh
Confidence 5555442 68999999998763 2456688999999999999999883 4789999999644
Q ss_pred eCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh
Q psy11859 365 HPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK 427 (851)
Q Consensus 365 ~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~ 427 (851)
.- +.|..+ .|+.||+.-+.+++.++
T Consensus 139 ~~----------~~~~~~----------------------------~Y~askaal~~~~~~la 163 (167)
T PF00106_consen 139 VR----------GSPGMS----------------------------AYSASKAALRGLTQSLA 163 (167)
T ss_dssp TS----------SSTTBH----------------------------HHHHHHHHHHHHHHHHH
T ss_pred cc----------CCCCCh----------------------------hHHHHHHHHHHHHHHHH
Confidence 21 223322 49999999999988765
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=117.78 Aligned_cols=165 Identities=12% Similarity=0.088 Sum_probs=114.9
Q ss_pred cCCCEEEEecCc--cHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 216 YAGRSVLVTGGT--GFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 216 ~~~k~VlVTGat--GFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
+++|+|+||||+ +=||..+++.|++.| .+|++..|... ..+++.++ .++.. .. .++.+|
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G---~~Vil~~r~~~---~~~~~~~~---------~~~~~---~~-~~~~~D 63 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQG---AELAFTYLNEA---LKKRVEPI---------AQELG---SD-YVYELD 63 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCC---CEEEEEecCHH---HHHHHHHH---------HHhcC---Cc-eEEEec
Confidence 468999999997 789999999999998 67888887632 12233222 11111 12 578999
Q ss_pred CCCCcCCCCHHHHHHHh-------cCccEEEEccccCC-------c----chhHHHHHHHHHHHHHHHHHHHHhc-CCce
Q psy11859 294 ILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLK-------L----EAELKENVAANTRGTQRLLDIALKM-KKLV 354 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~-------~----~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~ 354 (851)
++|++ ++..++ .++|++||+|+... + .+.++..+++|+.|+..+.+++... ..-.
T Consensus 64 v~d~~------~v~~~~~~i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g 137 (274)
T PRK08415 64 VSKPE------HFKSLAESLKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGA 137 (274)
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCC
Confidence 99986 444433 36899999999642 1 1346678999999999998887642 1124
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~ 429 (851)
++|++||..+.. +.|. ...|+.||+..+.+.+..+. +
T Consensus 138 ~Iv~isS~~~~~----------~~~~----------------------------~~~Y~asKaal~~l~~~la~el~~~g 179 (274)
T PRK08415 138 SVLTLSYLGGVK----------YVPH----------------------------YNVMGVAKAALESSVRYLAVDLGKKG 179 (274)
T ss_pred cEEEEecCCCcc----------CCCc----------------------------chhhhhHHHHHHHHHHHHHHHhhhcC
Confidence 789999854321 1111 13499999998888876643 7
Q ss_pred CCEEEEecccccCC
Q psy11859 430 LPVVIVRPSIVLPS 443 (851)
Q Consensus 430 l~~~ivRp~~V~G~ 443 (851)
+.+..+-||.|-.+
T Consensus 180 IrVn~v~PG~v~T~ 193 (274)
T PRK08415 180 IRVNAISAGPIKTL 193 (274)
T ss_pred eEEEEEecCccccH
Confidence 88999999988654
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-09 Score=116.49 Aligned_cols=165 Identities=13% Similarity=0.106 Sum_probs=113.9
Q ss_pred cCCCEEEEecCcc--HHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 216 YAGRSVLVTGGTG--FMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 216 ~~~k~VlVTGatG--FIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
++||+++||||++ =||+.+++.|++.| .+|++..|..+ ..+.+.++ ... .+++.++.+|
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G---~~vil~~r~~~---~~~~~~~~---------~~~----~~~~~~~~~D 64 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREG---AELAFTYQNDK---LKGRVEEF---------AAQ----LGSDIVLPCD 64 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCC---CEEEEEecchh---HHHHHHHH---------Hhc----cCCceEeecC
Confidence 5789999999985 89999999999998 57777777521 12222222 111 1245678999
Q ss_pred CCCCcCCCCHHHHHHHh-------cCccEEEEccccCCc------------chhHHHHHHHHHHHHHHHHHHHHhcC-Cc
Q psy11859 294 ILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL------------EAELKENVAANTRGTQRLLDIALKMK-KL 353 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~------------~~~~~~~~~~Nv~Gt~~ll~~a~~~~-~~ 353 (851)
++|++ ++..++ ..+|++||+||.... .+.++..+++|+.|...+.+++..+- .-
T Consensus 65 l~~~~------~v~~~~~~~~~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~ 138 (262)
T PRK07984 65 VAEDA------SIDAMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPG 138 (262)
T ss_pred CCCHH------HHHHHHHHHHhhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCC
Confidence 99886 555443 258999999986421 12455678999999998888875431 11
Q ss_pred eEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----
Q psy11859 354 VAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----- 428 (851)
Q Consensus 354 ~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----- 428 (851)
.++|++||..... +.|. ...|+.||+.-+.+++..+.
T Consensus 139 g~Iv~iss~~~~~----------~~~~----------------------------~~~Y~asKaal~~l~~~la~el~~~ 180 (262)
T PRK07984 139 SALLTLSYLGAER----------AIPN----------------------------YNVMGLAKASLEANVRYMANAMGPE 180 (262)
T ss_pred cEEEEEecCCCCC----------CCCC----------------------------cchhHHHHHHHHHHHHHHHHHhccc
Confidence 4688888854311 1111 13499999999998876643
Q ss_pred CCCEEEEecccccCC
Q psy11859 429 KLPVVIVRPSIVLPS 443 (851)
Q Consensus 429 ~l~~~ivRp~~V~G~ 443 (851)
++.+..+-||.|--+
T Consensus 181 gIrVn~i~PG~v~T~ 195 (262)
T PRK07984 181 GVRVNAISAGPIRTL 195 (262)
T ss_pred CcEEeeeecCcccch
Confidence 788999999988543
|
|
| >KOG2774|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.4e-10 Score=112.30 Aligned_cols=232 Identities=20% Similarity=0.196 Sum_probs=148.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
-+.-+||||||-|-+|..++.-|-.. .+-..|++-+.-+.... ..+.=-+|-.||.
T Consensus 42 ~~~PrvLITG~LGQLG~~~A~LLR~~-yGs~~VILSDI~KPp~~-----------------------V~~~GPyIy~DIL 97 (366)
T KOG2774|consen 42 QKAPRVLITGSLGQLGRGLASLLRYM-YGSECVILSDIVKPPAN-----------------------VTDVGPYIYLDIL 97 (366)
T ss_pred CCCCeEEEecchHHHhHHHHHHHHHH-hCCccEehhhccCCchh-----------------------hcccCCchhhhhh
Confidence 34568999999999999987655544 33355666554444321 1112235678888
Q ss_pred CCcCCCCHHHHHHHh--cCccEEEEccccCC-cc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCccc
Q psy11859 296 QANLGIKDSDLLMLQ--EEVSVVFNGAASLK-LE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVL 371 (851)
Q Consensus 296 ~~~lgls~~~~~~~~--~~vd~ViH~AA~~~-~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i 371 (851)
|.. .++++. .++|..||..|..+ +. .+...+.++|+.|.-|+++.|++++ ++.|| -||+.+.|+..+
T Consensus 98 D~K------~L~eIVVn~RIdWL~HfSALLSAvGE~NVpLA~~VNI~GvHNil~vAa~~k-L~iFV-PSTIGAFGPtSP- 168 (366)
T KOG2774|consen 98 DQK------SLEEIVVNKRIDWLVHFSALLSAVGETNVPLALQVNIRGVHNILQVAAKHK-LKVFV-PSTIGAFGPTSP- 168 (366)
T ss_pred ccc------cHHHhhcccccceeeeHHHHHHHhcccCCceeeeecchhhhHHHHHHHHcC-eeEee-cccccccCCCCC-
Confidence 876 555544 47999999999754 22 3445678999999999999999985 76665 588888887542
Q ss_pred ccccCCCCCCHHHHHHHHhhccHHHHhhhCCcc-cCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCC--
Q psy11859 372 EEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKI-LGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQE-- 446 (851)
Q Consensus 372 ~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~-- 446 (851)
.+| ||.+ ++.....||.||.-||.+-..+.. ++.+-.+|++.+++....
T Consensus 169 --------RNP------------------TPdltIQRPRTIYGVSKVHAEL~GEy~~hrFg~dfr~~rfPg~is~~~pgg 222 (366)
T KOG2774|consen 169 --------RNP------------------TPDLTIQRPRTIYGVSKVHAELLGEYFNHRFGVDFRSMRFPGIISATKPGG 222 (366)
T ss_pred --------CCC------------------CCCeeeecCceeechhHHHHHHHHHHHHhhcCccceecccCcccccCCCCC
Confidence 222 1111 111124599999999998877655 899999999888865221
Q ss_pred -----CchhHhhhhcCCceEE---------EEcccCceeEEE---eec-CCCCccEEEEeCCCCccccHHHHHHHHHHHh
Q psy11859 447 -----PVPGWVDSLNGPVGVL---------VASGKGVVRSMI---LND-LSTETQVFNISSNEVEAITWGEIISRGKQLI 508 (851)
Q Consensus 447 -----p~p~~i~~~~~~~~~~---------~~~g~~v~~~~~---~~~-~~~~~~iyni~~~~~~~~t~~el~~~~~~~~ 508 (851)
.+..|-+.+..+.-.. +-+..|..++++ .++ +.-..++||+++- ..|-.|+++.+.+..
T Consensus 223 gttdya~A~f~~Al~~gk~tCylrpdtrlpmmy~~dc~~~~~~~~~a~~~~lkrr~ynvt~~---sftpee~~~~~~~~~ 299 (366)
T KOG2774|consen 223 GTTDYAIAIFYDALQKGKHTCYLRPDTRLPMMYDTDCMASVIQLLAADSQSLKRRTYNVTGF---SFTPEEIADAIRRVM 299 (366)
T ss_pred CcchhHHHHHHHHHHcCCcccccCCCccCceeehHHHHHHHHHHHhCCHHHhhhheeeecee---ccCHHHHHHHHHhhC
Confidence 2566777654432211 111222222221 111 1234579999764 578899999988874
Q ss_pred h
Q psy11859 509 Y 509 (851)
Q Consensus 509 ~ 509 (851)
.
T Consensus 300 p 300 (366)
T KOG2774|consen 300 P 300 (366)
T ss_pred C
Confidence 3
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-09 Score=114.65 Aligned_cols=165 Identities=15% Similarity=0.110 Sum_probs=113.6
Q ss_pred cCCCEEEEecC--ccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 216 YAGRSVLVTGG--TGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 216 ~~~k~VlVTGa--tGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
+++|+|+|||| ++=||..++++|++.| .+|++..|.... .+++.++ .++.+ ...++.+|
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G---~~v~~~~~~~~~---~~~~~~~---------~~~~~----~~~~~~~D 64 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREG---AELAFTYVGDRF---KDRITEF---------AAEFG----SDLVFPCD 64 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCC---CeEEEEccchHH---HHHHHHH---------HHhcC----Ccceeecc
Confidence 57899999997 5789999999999998 677776654221 2333222 11111 23468899
Q ss_pred CCCCcCCCCHHHHHHHh-------cCccEEEEccccCCc------------chhHHHHHHHHHHHHHHHHHHHHhc-CCc
Q psy11859 294 ILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL------------EAELKENVAANTRGTQRLLDIALKM-KKL 353 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~------------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~ 353 (851)
++|++ ++..++ ..+|++||+|+.... .+.++..+++|+.|+..+.+++... .+-
T Consensus 65 v~d~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~ 138 (260)
T PRK06997 65 VASDE------QIDALFASLGQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDD 138 (260)
T ss_pred CCCHH------HHHHHHHHHHHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 99987 555444 368999999986421 1345677999999999998887642 222
Q ss_pred eEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----
Q psy11859 354 VAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----- 428 (851)
Q Consensus 354 ~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----- 428 (851)
.++|++||..+.. +.|. ...|+.||+.-+.+.+..+.
T Consensus 139 g~Ii~iss~~~~~----------~~~~----------------------------~~~Y~asKaal~~l~~~la~el~~~ 180 (260)
T PRK06997 139 ASLLTLSYLGAER----------VVPN----------------------------YNTMGLAKASLEASVRYLAVSLGPK 180 (260)
T ss_pred ceEEEEecccccc----------CCCC----------------------------cchHHHHHHHHHHHHHHHHHHhccc
Confidence 5789998854311 1111 13499999999888876543
Q ss_pred CCCEEEEecccccCC
Q psy11859 429 KLPVVIVRPSIVLPS 443 (851)
Q Consensus 429 ~l~~~ivRp~~V~G~ 443 (851)
++.+..+-||.|-.+
T Consensus 181 gIrVn~i~PG~v~T~ 195 (260)
T PRK06997 181 GIRANGISAGPIKTL 195 (260)
T ss_pred CeEEEEEeeCccccc
Confidence 789999999987543
|
|
| >KOG3608|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-11 Score=127.79 Aligned_cols=119 Identities=21% Similarity=0.305 Sum_probs=90.7
Q ss_pred cCCCCCCCCCceeeee--ccceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHh-hhcCCCc
Q psy11859 673 WYPNGQIRSNRFWHYF--FVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLR-RHSGERS 749 (851)
Q Consensus 673 ~~~~~~l~~h~~~h~~--~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~-~H~gekp 749 (851)
+-....|-.|.++.+. ..+|.|..|.|.|.+...|..|+.-|- .-|+| +.|+.+....++|..|++ .|+.+||
T Consensus 217 F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHv--n~ykC--plCdmtc~~~ssL~~H~r~rHs~dkp 292 (467)
T KOG3608|consen 217 FRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHV--NCYKC--PLCDMTCSSASSLTTHIRYRHSKDKP 292 (467)
T ss_pred hccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhh--hcccc--cccccCCCChHHHHHHHHhhhccCCC
Confidence 3335555566555533 447888888888888888888888884 66888 888888888888888887 5788888
Q ss_pred cccCccccCccccCchhHHHhhhhcCCCCCccCCC--CCCccccccccCCc
Q psy11859 750 FKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTL--CVKKSLLAILNCPH 798 (851)
Q Consensus 750 ~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~--Cgk~f~~~~~~~~H 798 (851)
|+|+ .|.+.|.+.+.|.+|...|+ +-.|.|+. |..++.....++.|
T Consensus 293 fKCd--~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H 340 (467)
T KOG3608|consen 293 FKCD--ECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRH 340 (467)
T ss_pred cccc--chhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHH
Confidence 8887 88888888888888888887 55688877 88777655544444
|
|
| >KOG4039|consensus | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.4e-10 Score=105.99 Aligned_cols=168 Identities=22% Similarity=0.223 Sum_probs=127.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|++||.||||-.|+.|++.++++ |...+|+++.|.+..- |+...++..+..|..
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~-~~FSKV~~i~RR~~~d----------------------~at~k~v~q~~vDf~ 72 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEA-PQFSKVYAILRRELPD----------------------PATDKVVAQVEVDFS 72 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhc-ccceeEEEEEeccCCC----------------------ccccceeeeEEechH
Confidence 56789999999999999999999987 6888999999976321 223346777788887
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCccccccc
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKL 375 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~ 375 (851)
.-+ ++...++++|+.|-+-|+.+-....+-.+++.-.-...++++|++.+ ++.||.+||+.+..+..
T Consensus 73 Kl~------~~a~~~qg~dV~FcaLgTTRgkaGadgfykvDhDyvl~~A~~AKe~G-ck~fvLvSS~GAd~sSr------ 139 (238)
T KOG4039|consen 73 KLS------QLATNEQGPDVLFCALGTTRGKAGADGFYKVDHDYVLQLAQAAKEKG-CKTFVLVSSAGADPSSR------ 139 (238)
T ss_pred HHH------HHHhhhcCCceEEEeecccccccccCceEeechHHHHHHHHHHHhCC-CeEEEEEeccCCCcccc------
Confidence 655 77777889999999999887655555566666667778889998875 99999999975532211
Q ss_pred CCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCC-chhHhhh
Q psy11859 376 YPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEP-VPGWVDS 454 (851)
Q Consensus 376 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p-~p~~i~~ 454 (851)
-.|-.+|-..|+-+.+.. =-.++|+|||.+.|.+.+. ...|.-+
T Consensus 140 ----------------------------------FlY~k~KGEvE~~v~eL~-F~~~~i~RPG~ll~~R~esr~geflg~ 184 (238)
T KOG4039|consen 140 ----------------------------------FLYMKMKGEVERDVIELD-FKHIIILRPGPLLGERTESRQGEFLGN 184 (238)
T ss_pred ----------------------------------eeeeeccchhhhhhhhcc-ccEEEEecCcceecccccccccchhhh
Confidence 128888888888776653 1258999999999988765 4455554
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.1e-09 Score=113.60 Aligned_cols=166 Identities=12% Similarity=0.098 Sum_probs=113.8
Q ss_pred hcCCCEEEEecCcc--HHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 215 WYAGRSVLVTGGTG--FMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 215 ~~~~k~VlVTGatG--FIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
.++||+++||||++ =||..+++.|++.| .+|++..|... ..+.++++ .++. ....++.+
T Consensus 5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G---~~v~~~~r~~~---~~~~~~~l---------~~~~----g~~~~~~~ 65 (260)
T PRK06603 5 LLQGKKGLITGIANNMSISWAIAQLAKKHG---AELWFTYQSEV---LEKRVKPL---------AEEI----GCNFVSEL 65 (260)
T ss_pred ccCCcEEEEECCCCCcchHHHHHHHHHHcC---CEEEEEeCchH---HHHHHHHH---------HHhc----CCceEEEc
Confidence 35789999999996 69999999999998 67877776521 12223222 1111 12235789
Q ss_pred CCCCCcCCCCHHHHHHHh-------cCccEEEEccccCC-------c----chhHHHHHHHHHHHHHHHHHHHHh-cCCc
Q psy11859 293 DILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLK-------L----EAELKENVAANTRGTQRLLDIALK-MKKL 353 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~-------~----~~~~~~~~~~Nv~Gt~~ll~~a~~-~~~~ 353 (851)
|++|++ ++..++ ..+|++||+|+... + .+.+...+++|+.|+..+++++.. +..-
T Consensus 66 Dv~~~~------~v~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~ 139 (260)
T PRK06603 66 DVTNPK------SISNLFDDIKEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDG 139 (260)
T ss_pred cCCCHH------HHHHHHHHHHHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 999986 555443 35899999998642 1 134667899999999999887753 2112
Q ss_pred eEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----
Q psy11859 354 VAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----- 428 (851)
Q Consensus 354 ~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----- 428 (851)
.++|++||..+.. +.|. ...|+.||+..+.+.+..+.
T Consensus 140 G~Iv~isS~~~~~----------~~~~----------------------------~~~Y~asKaal~~l~~~la~el~~~ 181 (260)
T PRK06603 140 GSIVTLTYYGAEK----------VIPN----------------------------YNVMGVAKAALEASVKYLANDMGEN 181 (260)
T ss_pred ceEEEEecCcccc----------CCCc----------------------------ccchhhHHHHHHHHHHHHHHHhhhc
Confidence 4789999853311 1111 13499999999988876543
Q ss_pred CCCEEEEecccccCC
Q psy11859 429 KLPVVIVRPSIVLPS 443 (851)
Q Consensus 429 ~l~~~ivRp~~V~G~ 443 (851)
++.+..+-||.|-.+
T Consensus 182 gIrVn~v~PG~v~T~ 196 (260)
T PRK06603 182 NIRVNAISAGPIKTL 196 (260)
T ss_pred CeEEEEEecCcCcch
Confidence 799999999988654
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.3e-09 Score=112.94 Aligned_cols=174 Identities=15% Similarity=0.117 Sum_probs=113.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCC----HHHHHHHHhcChhhHHHhhhCcccCCCeEEEE
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLT----PKARLAEFSKLPVFERLRKECPAQLSRLHIIE 291 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~----~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~ 291 (851)
++||+|+||||+|-||..+++.|++.| .+|+++.|...... ..+++.++ -+.+. ....++.++.
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G---~~Vv~~~r~~~~~~~~~~~~~~~~~~-----~~~l~----~~~~~~~~~~ 73 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAG---ATVYVTGRSTRARRSEYDRPETIEET-----AELVT----AAGGRGIAVQ 73 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEecccccccccccccchHHHH-----HHHHH----hcCCceEEEE
Confidence 578999999999999999999999998 68888888743210 01122111 01111 1123577899
Q ss_pred cCCCCCcCCCCHHHHHHHh-------cCccEEEEcc-ccC-------Cc----chhHHHHHHHHHHHHHHHHHHHHhc--
Q psy11859 292 GDILQANLGIKDSDLLMLQ-------EEVSVVFNGA-ASL-------KL----EAELKENVAANTRGTQRLLDIALKM-- 350 (851)
Q Consensus 292 gDi~~~~lgls~~~~~~~~-------~~vd~ViH~A-A~~-------~~----~~~~~~~~~~Nv~Gt~~ll~~a~~~-- 350 (851)
+|+++++ ++..++ ..+|++||+| +.. .+ .+.+.+.+++|+.|+..+.+++...
T Consensus 74 ~Dv~~~~------~v~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~ 147 (305)
T PRK08303 74 VDHLVPE------QVRALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLI 147 (305)
T ss_pred cCCCCHH------HHHHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9999886 555443 3589999999 632 11 1234567899999999988877542
Q ss_pred -CCceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-
Q psy11859 351 -KKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT- 428 (851)
Q Consensus 351 -~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~- 428 (851)
.+--++|.+||..+.-.. .+.+. ...|+.||+..+.+.+..+.
T Consensus 148 ~~~~g~IV~isS~~~~~~~-------~~~~~----------------------------~~~Y~asKaal~~lt~~La~e 192 (305)
T PRK08303 148 RRPGGLVVEITDGTAEYNA-------THYRL----------------------------SVFYDLAKTSVNRLAFSLAHE 192 (305)
T ss_pred hCCCcEEEEECCccccccC-------cCCCC----------------------------cchhHHHHHHHHHHHHHHHHH
Confidence 112478999884321000 00010 12399999999888765533
Q ss_pred ----CCCEEEEecccccC
Q psy11859 429 ----KLPVVIVRPSIVLP 442 (851)
Q Consensus 429 ----~l~~~ivRp~~V~G 442 (851)
++.+..|.||.|-.
T Consensus 193 l~~~gIrVn~v~PG~v~T 210 (305)
T PRK08303 193 LAPHGATAVALTPGWLRS 210 (305)
T ss_pred hhhcCcEEEEecCCcccc
Confidence 78899999987743
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-08 Score=107.23 Aligned_cols=163 Identities=12% Similarity=0.134 Sum_probs=111.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++|++++||||++=||..++++|++.| ..|+++.|.... ++++ .+.+.+ ...++..+..|++
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G---~~V~~~~r~~~~------l~~~-----~~~i~~----~~~~~~~~~~D~~ 64 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLG---ATLILCDQDQSA------LKDT-----YEQCSA----LTDNVYSFQLKDF 64 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCC---CEEEEEcCCHHH------HHHH-----HHHHHh----cCCCeEEEEccCC
Confidence 468999999999999999999999998 678888886432 1111 111111 1235778889999
Q ss_pred CCcCCCCHHHHHHHh-------c-CccEEEEccccCC----cc----hhHHHHHHHHHHHHHHHHHHHHh----cCCceE
Q psy11859 296 QANLGIKDSDLLMLQ-------E-EVSVVFNGAASLK----LE----AELKENVAANTRGTQRLLDIALK----MKKLVA 355 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~-~vd~ViH~AA~~~----~~----~~~~~~~~~Nv~Gt~~ll~~a~~----~~~~~~ 355 (851)
+++ ++..++ . .+|++||+||... +. +.+...+.+|+.++..+++.+.. .+.-..
T Consensus 65 ~~~------~~~~~~~~~~~~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~ 138 (227)
T PRK08862 65 SQE------SIRHLFDAIEQQFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGV 138 (227)
T ss_pred CHH------HHHHHHHHHHHHhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCce
Confidence 876 554332 3 6899999997432 11 23445678899888877665542 211347
Q ss_pred EEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CC
Q psy11859 356 FIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KL 430 (851)
Q Consensus 356 fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l 430 (851)
+|++||..+. .+. ..|+.||+.-+.+.+..+. ++
T Consensus 139 Iv~isS~~~~------------~~~-----------------------------~~Y~asKaal~~~~~~la~el~~~~I 177 (227)
T PRK08862 139 IVNVISHDDH------------QDL-----------------------------TGVESSNALVSGFTHSWAKELTPFNI 177 (227)
T ss_pred EEEEecCCCC------------CCc-----------------------------chhHHHHHHHHHHHHHHHHHHhhcCc
Confidence 8999984211 111 2399999998887765532 89
Q ss_pred CEEEEecccccCC
Q psy11859 431 PVVIVRPSIVLPS 443 (851)
Q Consensus 431 ~~~ivRp~~V~G~ 443 (851)
.+..|.||.|-.+
T Consensus 178 rvn~v~PG~i~t~ 190 (227)
T PRK08862 178 RVGGVVPSIFSAN 190 (227)
T ss_pred EEEEEecCcCcCC
Confidence 9999999988776
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-08 Score=109.41 Aligned_cols=165 Identities=12% Similarity=0.072 Sum_probs=112.4
Q ss_pred cCCCEEEEecC--ccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 216 YAGRSVLVTGG--TGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 216 ~~~k~VlVTGa--tGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
+++|+++|||| ++-||..+++.|++.| .+|++..|.... +.+++ +.++. ..++.++.+|
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G---~~v~l~~r~~~~----~~~~~---------~~~~~---~~~~~~~~~D 65 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQG---AEVVLTGFGRAL----RLTER---------IAKRL---PEPAPVLELD 65 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCC---CEEEEecCccch----hHHHH---------HHHhc---CCCCcEEeCC
Confidence 56899999999 8999999999999998 688888875421 11111 11111 1256789999
Q ss_pred CCCCcCCCCHHHHHHHh-------cCccEEEEccccCC-------cc----hhHHHHHHHHHHHHHHHHHHHHhc-CCce
Q psy11859 294 ILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLK-------LE----AELKENVAANTRGTQRLLDIALKM-KKLV 354 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~-------~~----~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~ 354 (851)
+++++ ++..++ .++|++||+||... +. +.+...+++|+.|+..+.+++... ..-.
T Consensus 66 v~~~~------~i~~~~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g 139 (256)
T PRK07889 66 VTNEE------HLASLADRVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGG 139 (256)
T ss_pred CCCHH------HHHHHHHHHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCc
Confidence 99886 444432 36899999999752 21 234567999999999988887532 1113
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~ 429 (851)
++|.+|+.... ..|. ...|+.||+.-+.+.+..+. +
T Consensus 140 ~Iv~is~~~~~-----------~~~~----------------------------~~~Y~asKaal~~l~~~la~el~~~g 180 (256)
T PRK07889 140 SIVGLDFDATV-----------AWPA----------------------------YDWMGVAKAALESTNRYLARDLGPRG 180 (256)
T ss_pred eEEEEeecccc-----------cCCc----------------------------cchhHHHHHHHHHHHHHHHHHhhhcC
Confidence 67777652110 1111 12389999999888766543 7
Q ss_pred CCEEEEecccccCCC
Q psy11859 430 LPVVIVRPSIVLPSF 444 (851)
Q Consensus 430 l~~~ivRp~~V~G~~ 444 (851)
+.+..|.||.|-.+.
T Consensus 181 Irvn~v~PG~v~T~~ 195 (256)
T PRK07889 181 IRVNLVAAGPIRTLA 195 (256)
T ss_pred eEEEeeccCcccChh
Confidence 899999999887653
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.3e-09 Score=113.62 Aligned_cols=121 Identities=16% Similarity=0.153 Sum_probs=82.7
Q ss_pred EEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcCCC
Q psy11859 222 LVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLGI 301 (851)
Q Consensus 222 lVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lgl 301 (851)
+||||+|-||..++++|++.|. .+|++..|.... .+.+.+ .+ .....++.++..|+++.+
T Consensus 1 lITGas~GIG~aia~~l~~~G~--~~V~~~~r~~~~---~~~~~~--------~l----~~~~~~~~~~~~Dl~d~~--- 60 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGK--WHVVMACRDFLK---AERAAK--------SA----GMPKDSYTVMHLDLASLD--- 60 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCC--CEEEEEeCCHHH---HHHHHH--------Hh----cCCCCeEEEEEecCCCHH---
Confidence 6999999999999999999873 468888775421 111111 11 111236888999999876
Q ss_pred CHHHHHHHh-------cCccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhc---CC--ceEEEEeee
Q psy11859 302 KDSDLLMLQ-------EEVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKM---KK--LVAFIHFST 361 (851)
Q Consensus 302 s~~~~~~~~-------~~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~--~~~fV~vST 361 (851)
++..++ ..+|++||+||.... .+.++..+++|+.|+..+++++... .+ -.++|++||
T Consensus 61 ---~v~~~~~~~~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS 137 (308)
T PLN00015 61 ---SVRQFVDNFRRSGRPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGS 137 (308)
T ss_pred ---HHHHHHHHHHhcCCCCCEEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEec
Confidence 444433 358999999997421 1345678999999988887665432 11 358999999
Q ss_pred eeee
Q psy11859 362 AFCH 365 (851)
Q Consensus 362 a~~~ 365 (851)
..++
T Consensus 138 ~~~~ 141 (308)
T PLN00015 138 ITGN 141 (308)
T ss_pred cccc
Confidence 7653
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-08 Score=103.37 Aligned_cols=159 Identities=20% Similarity=0.270 Sum_probs=109.2
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC-CCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK-RGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~-~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
+++||||+|-||..+++.|++++. .+|+++.|+. ......+.++++. + ...+|.++.+|++|++
T Consensus 2 tylitGG~gglg~~la~~La~~~~--~~~il~~r~~~~~~~~~~~i~~l~---------~----~g~~v~~~~~Dv~d~~ 66 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGA--RRLILLGRSGAPSAEAEAAIRELE---------S----AGARVEYVQCDVTDPE 66 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGGGSTTHHHHHHHHH---------H----TT-EEEEEE--TTSHH
T ss_pred EEEEECCccHHHHHHHHHHHHcCC--CEEEEeccCCCccHHHHHHHHHHH---------h----CCCceeeeccCccCHH
Confidence 689999999999999999999874 7999999993 3333444443332 1 1237999999999987
Q ss_pred CCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeee
Q psy11859 299 LGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFC 364 (851)
Q Consensus 299 lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~ 364 (851)
++..+++ .++.|||+|+.... .+.....+..-+.|+.+|.++.... .+..||..||+.+
T Consensus 67 ------~v~~~~~~~~~~~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~-~l~~~i~~SSis~ 139 (181)
T PF08659_consen 67 ------AVAAALAQLRQRFGPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENR-PLDFFILFSSISS 139 (181)
T ss_dssp ------HHHHHHHTSHTTSS-EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTT-TTSEEEEEEEHHH
T ss_pred ------HHHHHHHHHHhccCCcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcC-CCCeEEEECChhH
Confidence 7776653 46889999997542 1345577889999999999999775 5999999999643
Q ss_pred -eCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-CCCEEEEeccc
Q psy11859 365 -HPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-KLPVVIVRPSI 439 (851)
Q Consensus 365 -~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-~l~~~ivRp~~ 439 (851)
.|.. - ...|+..-...+.++..... ++|++.+..+.
T Consensus 140 ~~G~~-----------g----------------------------q~~YaaAN~~lda~a~~~~~~g~~~~sI~wg~ 177 (181)
T PF08659_consen 140 LLGGP-----------G----------------------------QSAYAAANAFLDALARQRRSRGLPAVSINWGA 177 (181)
T ss_dssp HTT-T-----------T----------------------------BHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-E
T ss_pred hccCc-----------c----------------------------hHhHHHHHHHHHHHHHHHHhCCCCEEEEEccc
Confidence 2221 1 12399988888888866544 89988877653
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-08 Score=106.71 Aligned_cols=163 Identities=18% Similarity=0.205 Sum_probs=107.5
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|+||||++-||..++++|+ .| .+|+++.|.... ++++ -+.+++. ...++.++.+|++|++
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g---~~Vil~~r~~~~------~~~~-----~~~l~~~---~~~~~~~~~~Dv~d~~ 62 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HG---EDVVLAARRPEA------AQGL-----ASDLRQR---GATSVHVLSFDAQDLD 62 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CC---CEEEEEeCCHHH------HHHH-----HHHHHhc---cCCceEEEEcccCCHH
Confidence 679999999999999999998 46 688888886432 2111 1112111 1125788999999986
Q ss_pred CCCCHHHHHHHh-------cCccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHH----hcCCceEEEEee
Q psy11859 299 LGIKDSDLLMLQ-------EEVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIAL----KMKKLVAFIHFS 360 (851)
Q Consensus 299 lgls~~~~~~~~-------~~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV~vS 360 (851)
++..++ .++|++||+||..... +...+...+|+.+...++.++. +.+.-.++|++|
T Consensus 63 ------~v~~~~~~~~~~~g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~is 136 (246)
T PRK05599 63 ------THRELVKQTQELAGEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFS 136 (246)
T ss_pred ------HHHHHHHHHHHhcCCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 444332 3689999999975321 1233557789888887665542 221125799999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~iv 435 (851)
|..+.-. .|. ...|+.||+.-+.+.+..+. ++.+..+
T Consensus 137 S~~~~~~----------~~~----------------------------~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v 178 (246)
T PRK05599 137 SIAGWRA----------RRA----------------------------NYVYGSTKAGLDAFCQGLADSLHGSHVRLIIA 178 (246)
T ss_pred ccccccC----------CcC----------------------------CcchhhHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 9654211 111 13499999988877766533 7888888
Q ss_pred ecccccCC
Q psy11859 436 RPSIVLPS 443 (851)
Q Consensus 436 Rp~~V~G~ 443 (851)
-||.|..+
T Consensus 179 ~PG~v~T~ 186 (246)
T PRK05599 179 RPGFVIGS 186 (246)
T ss_pred cCCcccch
Confidence 88877654
|
|
| >KOG1201|consensus | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.5e-08 Score=102.58 Aligned_cols=124 Identities=19% Similarity=0.246 Sum_probs=91.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
.+|+.||||||++=||+.++.+++++| .++.+.+..+.+.. +-.+++ +.. .++....+|++
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg---~~~vl~Din~~~~~--etv~~~---------~~~-----g~~~~y~cdis 96 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRG---AKLVLWDINKQGNE--ETVKEI---------RKI-----GEAKAYTCDIS 96 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhC---CeEEEEeccccchH--HHHHHH---------Hhc-----CceeEEEecCC
Confidence 578999999999999999999999998 67888888877642 222111 111 26889999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHH----HhcCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIA----LKMKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a----~~~~~~~~fV 357 (851)
+++ ++.... ..||++|+.||.+.. ++..+..+++|+.|.....++- .+. +--.+|
T Consensus 97 ~~e------ei~~~a~~Vk~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~-~~GHIV 169 (300)
T KOG1201|consen 97 DRE------EIYRLAKKVKKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLEN-NNGHIV 169 (300)
T ss_pred CHH------HHHHHHHHHHHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhc-CCceEE
Confidence 886 555443 368999999998754 2456678999999987755543 333 345789
Q ss_pred Eeeeeeee
Q psy11859 358 HFSTAFCH 365 (851)
Q Consensus 358 ~vSTa~~~ 365 (851)
-++|+.+.
T Consensus 170 ~IaS~aG~ 177 (300)
T KOG1201|consen 170 TIASVAGL 177 (300)
T ss_pred Eehhhhcc
Confidence 99886553
|
|
| >KOG1203|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-08 Score=112.23 Aligned_cols=170 Identities=22% Similarity=0.211 Sum_probs=108.7
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
.-.+..+|||+||||-+|+.+++.|+++| ..|++++|....... ++. ..........+..|
T Consensus 75 ~~~~~~~VlVvGatG~vG~~iv~~llkrg---f~vra~VRd~~~a~~------~~~----------~~~~d~~~~~v~~~ 135 (411)
T KOG1203|consen 75 NSKKPTTVLVVGATGKVGRRIVKILLKRG---FSVRALVRDEQKAED------LLG----------VFFVDLGLQNVEAD 135 (411)
T ss_pred CCCCCCeEEEecCCCchhHHHHHHHHHCC---CeeeeeccChhhhhh------hhc----------ccccccccceeeec
Confidence 34566799999999999999999999998 789999998755321 111 00111244455555
Q ss_pred CCCCcCCCCHHHHHHHhcC----ccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc
Q psy11859 294 ILQANLGIKDSDLLMLQEE----VSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK 369 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~~----vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~ 369 (851)
...+. +....+.+. +.+|+-+|+-..-.++.....++-..|++|+++||+.++ +++||++|++.+.-.
T Consensus 136 ~~~~~-----d~~~~~~~~~~~~~~~v~~~~ggrp~~ed~~~p~~VD~~g~knlvdA~~~aG-vk~~vlv~si~~~~~-- 207 (411)
T KOG1203|consen 136 VVTAI-----DILKKLVEAVPKGVVIVIKGAGGRPEEEDIVTPEKVDYEGTKNLVDACKKAG-VKRVVLVGSIGGTKF-- 207 (411)
T ss_pred ccccc-----chhhhhhhhccccceeEEecccCCCCcccCCCcceecHHHHHHHHHHHHHhC-CceEEEEEeecCccc--
Confidence 55432 123333333 335555555443222223446788899999999999996 999999988644321
Q ss_pred ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccC
Q psy11859 370 VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLP 442 (851)
Q Consensus 370 ~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G 442 (851)
..|.+.... -..+-..|.++|..+++ .+++.+|+||+.-.=
T Consensus 208 -------~~~~~~~~~-----------------------~~~~~~~k~~~e~~~~~--Sgl~ytiIR~g~~~~ 248 (411)
T KOG1203|consen 208 -------NQPPNILLL-----------------------NGLVLKAKLKAEKFLQD--SGLPYTIIRPGGLEQ 248 (411)
T ss_pred -------CCCchhhhh-----------------------hhhhhHHHHhHHHHHHh--cCCCcEEEecccccc
Confidence 112211000 01144788899998874 489999999987553
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2e-08 Score=106.01 Aligned_cols=162 Identities=17% Similarity=0.094 Sum_probs=105.2
Q ss_pred HHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcCCCCHHHHHHHhc--
Q psy11859 234 LLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQE-- 311 (851)
Q Consensus 234 Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lgls~~~~~~~~~-- 311 (851)
++++|++.| .+|++++|..... + ...++.+|+++.+ ++..+++
T Consensus 1 ~a~~l~~~G---~~Vv~~~r~~~~~---~-----------------------~~~~~~~Dl~~~~------~v~~~~~~~ 45 (241)
T PRK12428 1 TARLLRFLG---ARVIGVDRREPGM---T-----------------------LDGFIQADLGDPA------SIDAAVAAL 45 (241)
T ss_pred ChHHHHhCC---CEEEEEeCCcchh---h-----------------------hhHhhcccCCCHH------HHHHHHHHh
Confidence 468889888 6889998875431 0 1235789999876 6665554
Q ss_pred --CccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEeeeeeeeCCCc--ccccccCCCCCCHHHHH
Q psy11859 312 --EVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKM-KKLVAFIHFSTAFCHPDQK--VLEEKLYPSPVSPHDIM 386 (851)
Q Consensus 312 --~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~vSTa~~~~~~~--~i~E~~~~~p~~~~~~~ 386 (851)
++|+|||+||... ..+++..+++|+.|+..+++++... ..-.++|++||..+++... +..|..... .+.
T Consensus 46 ~~~iD~li~nAG~~~-~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~-~~~---- 119 (241)
T PRK12428 46 PGRIDALFNIAGVPG-TAPVELVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKALAAT-ASF---- 119 (241)
T ss_pred cCCCeEEEECCCCCC-CCCHHHhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhhhcc-chH----
Confidence 5899999999753 3567889999999999999999753 2225899999987664211 111110000 000
Q ss_pred HHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh-----C-CCCEEEEecccccCCC
Q psy11859 387 RAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK-----T-KLPVVIVRPSIVLPSF 444 (851)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~-----~-~l~~~ivRp~~V~G~~ 444 (851)
++......... ......|+.||+..+.+.+..+ . ++.+.+|+||.|.++.
T Consensus 120 -------~~~~~~~~~~~-~~~~~~Y~~sK~a~~~~~~~la~~e~~~~girvn~v~PG~v~T~~ 175 (241)
T PRK12428 120 -------DEGAAWLAAHP-VALATGYQLSKEALILWTMRQAQPWFGARGIRVNCVAPGPVFTPI 175 (241)
T ss_pred -------HHHHHhhhccC-CCcccHHHHHHHHHHHHHHHHHHHhhhccCeEEEEeecCCccCcc
Confidence 00000000000 1112579999999998886655 2 8999999999998774
|
|
| >KOG1208|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.1e-08 Score=105.35 Aligned_cols=179 Identities=20% Similarity=0.249 Sum_probs=123.0
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC-CCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK-RGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~-~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
.+.+++++|||||.=||.+++++|.+.| .+|++..|.. .+....+++ ++ +....++.++..|
T Consensus 32 ~~~~~~~vVTGansGIG~eta~~La~~G---a~Vv~~~R~~~~~~~~~~~i------------~~--~~~~~~i~~~~lD 94 (314)
T KOG1208|consen 32 DLSGKVALVTGATSGIGFETARELALRG---AHVVLACRNEERGEEAKEQI------------QK--GKANQKIRVIQLD 94 (314)
T ss_pred cCCCcEEEEECCCCchHHHHHHHHHhCC---CEEEEEeCCHHHHHHHHHHH------------Hh--cCCCCceEEEECC
Confidence 3577999999999999999999999998 8999999986 222222222 11 2234589999999
Q ss_pred CCCCcCCCCHHHHHHHh-------cCccEEEEccccCCcc-----hhHHHHHHHHHHHHHHHHHHH----HhcCCceEEE
Q psy11859 294 ILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKLE-----AELKENVAANTRGTQRLLDIA----LKMKKLVAFI 357 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~~-----~~~~~~~~~Nv~Gt~~ll~~a----~~~~~~~~fV 357 (851)
+++.. ++.... ...|+.|+.||..... +..+..+.+|..|...|.++. +... ..|+|
T Consensus 95 Lssl~------SV~~fa~~~~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~-~~RIV 167 (314)
T KOG1208|consen 95 LSSLK------SVRKFAEEFKKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSA-PSRIV 167 (314)
T ss_pred CCCHH------HHHHHHHHHHhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCC-CCCEE
Confidence 99876 444332 3579999999976443 345677999999988776655 3343 37999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCccc--CCCCchhhHHHHHHHHHHHHHhC----CCC
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKIL--GPHPNSYTFTKRLTETLVDEYKT----KLP 431 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~n~Y~~SK~~aE~~v~~~~~----~l~ 431 (851)
.+||... +....++. .++ ... ......|+.||.+-.....+.++ ++.
T Consensus 168 ~vsS~~~-~~~~~~~~------l~~--------------------~~~~~~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~ 220 (314)
T KOG1208|consen 168 NVSSILG-GGKIDLKD------LSG--------------------EKAKLYSSDAAYALSKLANVLLANELAKRLKKGVT 220 (314)
T ss_pred EEcCccc-cCccchhh------ccc--------------------hhccCccchhHHHHhHHHHHHHHHHHHHHhhcCce
Confidence 9999654 11110000 000 000 00112599999988877777655 688
Q ss_pred EEEEecccccCCC
Q psy11859 432 VVIVRPSIVLPSF 444 (851)
Q Consensus 432 ~~ivRp~~V~G~~ 444 (851)
+..+-||.|..+.
T Consensus 221 ~~~~hPG~v~t~~ 233 (314)
T KOG1208|consen 221 TYSVHPGVVKTTG 233 (314)
T ss_pred EEEECCCcccccc
Confidence 9999999999883
|
|
| >PLN03086 PRLI-interacting factor K; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.9e-09 Score=119.68 Aligned_cols=101 Identities=14% Similarity=0.336 Sum_probs=65.0
Q ss_pred ccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCCCCccccccccCCcc
Q psy11859 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLLAILNCPHE 799 (851)
Q Consensus 720 ~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~Cgk~f~~~~~~~~H~ 799 (851)
+.| +.|++.|. .+.|..|++.|+ +|+.|+ ||+.+ .+..|..|+++|.+++|+.|+.|++.+.....
T Consensus 454 ~~C--~~Cgk~f~-~s~LekH~~~~H--kpv~Cp---Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~----- 519 (567)
T PLN03086 454 VHC--EKCGQAFQ-QGEMEKHMKVFH--EPLQCP---CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGS----- 519 (567)
T ss_pred ccC--CCCCCccc-hHHHHHHHHhcC--CCccCC---CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCcc-----
Confidence 467 67888775 566788877764 677883 77644 55777888877888888888888775521000
Q ss_pred cccCcccccccccCCCCCCccChHHHHHHHHhhcCCcchhhhhhHHhhhcC
Q psy11859 800 AECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVHERQKYKMMMKSMRKMKNK 850 (851)
Q Consensus 800 ~~C~k~f~~~~~~~~~~~pf~Ck~~L~~H~r~Htgek~~~C~~c~~~f~~k 850 (851)
...+... .+.|..|..++ |.+++.|..||+.|..|
T Consensus 520 ---~~d~~d~------------~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrlr 554 (567)
T PLN03086 520 ---AMDVRDR------------LRGMSEHESIC-GSRTAPCDSCGRSVMLK 554 (567)
T ss_pred ---ccchhhh------------hhhHHHHHHhc-CCcceEccccCCeeeeh
Confidence 0000000 13677787775 77888888888777644
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.9e-07 Score=97.50 Aligned_cols=165 Identities=21% Similarity=0.275 Sum_probs=112.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
..+++||||||++=||..+++.|++.| ..|+++.|..... ..+.+.+... . ... ..+.+...|++
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G---~~v~~~~~~~~~~-~~~~~~~~~~---------~-~~~-~~~~~~~~Dvs 67 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREG---ARVVVAARRSEEE-AAEALAAAIK---------E-AGG-GRAAAVAADVS 67 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CeEEEEcCCCchh-hHHHHHHHHH---------h-cCC-CcEEEEEecCC
Confidence 467999999999999999999999888 6777777765432 1111111100 0 000 36778889999
Q ss_pred C-CcCCCCHHHHHHHh-------cCccEEEEccccCC----cc----hhHHHHHHHHHHHHHHHHHHHHhcCCce--EEE
Q psy11859 296 Q-ANLGIKDSDLLMLQ-------EEVSVVFNGAASLK----LE----AELKENVAANTRGTQRLLDIALKMKKLV--AFI 357 (851)
Q Consensus 296 ~-~~lgls~~~~~~~~-------~~vd~ViH~AA~~~----~~----~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~--~fV 357 (851)
+ +. +...++ .++|+++|+|+... +. +.++..+++|+.|...+.+++... .+ ++|
T Consensus 68 ~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~--~~~~~Iv 139 (251)
T COG1028 68 DDEE------SVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPL--MKKQRIV 139 (251)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHh--hhhCeEE
Confidence 7 43 333322 24899999999753 22 456688999999999998855433 33 899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
.+||..+. .. .+. .-.|+.||+..+.+...++. ++.+
T Consensus 140 ~isS~~~~-~~---------~~~----------------------------~~~Y~~sK~al~~~~~~l~~e~~~~gi~v 181 (251)
T COG1028 140 NISSVAGL-GG---------PPG----------------------------QAAYAASKAALIGLTKALALELAPRGIRV 181 (251)
T ss_pred EECCchhc-CC---------CCC----------------------------cchHHHHHHHHHHHHHHHHHHHhhhCcEE
Confidence 99996543 21 111 02399999999888766542 7889
Q ss_pred EEEeccccc
Q psy11859 433 VIVRPSIVL 441 (851)
Q Consensus 433 ~ivRp~~V~ 441 (851)
..+-||.+-
T Consensus 182 ~~v~PG~~~ 190 (251)
T COG1028 182 NAVAPGYID 190 (251)
T ss_pred EEEEeccCC
Confidence 999998443
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-07 Score=126.44 Aligned_cols=181 Identities=14% Similarity=0.115 Sum_probs=121.1
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCC--------HHHHHHHH------------------
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLT--------PKARLAEF------------------ 267 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~--------~~~rl~~~------------------ 267 (851)
.+-+|++||||||+|-||..+++.|++++. .+|+++.|+..... ....++..
T Consensus 1993 ~l~~g~vvLVTGGarGIG~aiA~~LA~~~g--a~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~ 2070 (2582)
T TIGR02813 1993 ALNSDDVFLVTGGAKGVTFECALELAKQCQ--AHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVD 2070 (2582)
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHHHHhcC--CEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhh
Confidence 456789999999999999999999998842 68999999731100 00011100
Q ss_pred ------hc-ChhhHHHhhhCcccCCCeEEEEcCCCCCcCCCCHHHHHHHhc------CccEEEEccccCCc-------ch
Q psy11859 268 ------SK-LPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQE------EVSVVFNGAASLKL-------EA 327 (851)
Q Consensus 268 ------~~-~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lgls~~~~~~~~~------~vd~ViH~AA~~~~-------~~ 327 (851)
.. ..+-..+... .....++.++.+|++|.+ ++..++. ++|+|||+||.... .+
T Consensus 2071 ~~~~~~~~~~ei~~~la~l-~~~G~~v~y~~~DVtD~~------av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e 2143 (2582)
T TIGR02813 2071 ALVRPVLSSLEIAQALAAF-KAAGASAEYASADVTNSV------SVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLE 2143 (2582)
T ss_pred hcccccchhHHHHHHHHHH-HhcCCcEEEEEccCCCHH------HHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHH
Confidence 00 0000111110 112347889999999986 5544432 58999999997532 24
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeee-CCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccC
Q psy11859 328 ELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCH-PDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILG 406 (851)
Q Consensus 328 ~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~-~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (851)
.+...+++||.|+.++++++.... ++.+|++||+.+. |.. ..
T Consensus 2144 ~f~~v~~~nv~G~~~Ll~al~~~~-~~~IV~~SSvag~~G~~----------gq-------------------------- 2186 (2582)
T TIGR02813 2144 EFNAVYGTKVDGLLSLLAALNAEN-IKLLALFSSAAGFYGNT----------GQ-------------------------- 2186 (2582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEechhhcCCCC----------Cc--------------------------
Confidence 567889999999999999987653 6789999996542 211 11
Q ss_pred CCCchhhHHHHHHHHHHHHHhC---CCCEEEEecccccCC
Q psy11859 407 PHPNSYTFTKRLTETLVDEYKT---KLPVVIVRPSIVLPS 443 (851)
Q Consensus 407 ~~~n~Y~~SK~~aE~~v~~~~~---~l~~~ivRp~~V~G~ 443 (851)
..|+.+|..-+.+....+. +..+..+.||.+-|+
T Consensus 2187 ---s~YaaAkaaL~~la~~la~~~~~irV~sI~wG~wdtg 2223 (2582)
T TIGR02813 2187 ---SDYAMSNDILNKAALQLKALNPSAKVMSFNWGPWDGG 2223 (2582)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHcCCcEEEEEECCeecCC
Confidence 2399999888877766544 578888888876654
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG4288|consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.6e-08 Score=98.28 Aligned_cols=154 Identities=18% Similarity=0.187 Sum_probs=114.8
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
..+++-|+.||.|+++|+.-+..+ ..|-.|.|+..... + ..+...+.++.||.-..+
T Consensus 53 e~tlvlggnpfsgs~vlk~A~~vv---~svgilsen~~k~~-l-------------------~sw~~~vswh~gnsfssn 109 (283)
T KOG4288|consen 53 EWTLVLGGNPFSGSEVLKNATNVV---HSVGILSENENKQT-L-------------------SSWPTYVSWHRGNSFSSN 109 (283)
T ss_pred HHHhhhcCCCcchHHHHHHHHhhc---eeeeEeecccCcch-h-------------------hCCCcccchhhccccccC
Confidence 357899999999999999988876 78888888865321 1 123457788888887655
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccCCC
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPS 378 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~~~ 378 (851)
-+.....++..|+-+++-. .+...+.++|=....+-+++|.+.+ +++|||||..... ..
T Consensus 110 ------~~k~~l~g~t~v~e~~ggf---gn~~~m~~ing~ani~a~kaa~~~g-v~~fvyISa~d~~-----------~~ 168 (283)
T KOG4288|consen 110 ------PNKLKLSGPTFVYEMMGGF---GNIILMDRINGTANINAVKAAAKAG-VPRFVYISAHDFG-----------LP 168 (283)
T ss_pred ------cchhhhcCCcccHHHhcCc---cchHHHHHhccHhhHHHHHHHHHcC-CceEEEEEhhhcC-----------CC
Confidence 3455567888888887643 2334667788878888889998885 9999999984211 12
Q ss_pred CCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCC
Q psy11859 379 PVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSF 444 (851)
Q Consensus 379 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~ 444 (851)
|.. |.+|-.+|+.||.-+.... .+.-+|+|||.+||.+
T Consensus 169 ~~i---------------------------~rGY~~gKR~AE~Ell~~~-~~rgiilRPGFiyg~R 206 (283)
T KOG4288|consen 169 PLI---------------------------PRGYIEGKREAEAELLKKF-RFRGIILRPGFIYGTR 206 (283)
T ss_pred Ccc---------------------------chhhhccchHHHHHHHHhc-CCCceeeccceeeccc
Confidence 222 3579999999999887765 4888999999999984
|
|
| >KOG0725|consensus | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-07 Score=99.91 Aligned_cols=171 Identities=24% Similarity=0.249 Sum_probs=120.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+.||+++||||+.=||+.++++|++.| .+|++..|...... +...++.. . .....++..+.+|++
T Consensus 6 l~gkvalVTG~s~GIG~aia~~la~~G---a~v~i~~r~~~~~~--~~~~~~~~---------~-~~~~~~~~~~~~Dv~ 70 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIGKAIALLLAKAG---AKVVITGRSEERLE--ETAQELGG---------L-GYTGGKVLAIVCDVS 70 (270)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHH--HHHHHHHh---------c-CCCCCeeEEEECcCC
Confidence 689999999999999999999999999 89999999765321 11111100 0 011357899999999
Q ss_pred CCcCCCCHHHHHHH--------hcCccEEEEccccCCcc--------hhHHHHHHHHHHH-HHHHHHHHHhcC---CceE
Q psy11859 296 QANLGIKDSDLLML--------QEEVSVVFNGAASLKLE--------AELKENVAANTRG-TQRLLDIALKMK---KLVA 355 (851)
Q Consensus 296 ~~~lgls~~~~~~~--------~~~vd~ViH~AA~~~~~--------~~~~~~~~~Nv~G-t~~ll~~a~~~~---~~~~ 355 (851)
+.. +.+.+ ..++|++++.||..... +.++..+++|+.| +..+..+|..+- +--.
T Consensus 71 ~~~------~~~~l~~~~~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~ 144 (270)
T KOG0725|consen 71 KEV------DVEKLVEFAVEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGS 144 (270)
T ss_pred CHH------HHHHHHHHHHHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCce
Confidence 764 33333 23699999999976532 3566789999995 667777765432 2346
Q ss_pred EEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CC
Q psy11859 356 FIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KL 430 (851)
Q Consensus 356 fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l 430 (851)
++++||+...... .+. +-.|+.||+.-+++.+..+. ++
T Consensus 145 I~~~ss~~~~~~~---------~~~----------------------------~~~Y~~sK~al~~ltr~lA~El~~~gI 187 (270)
T KOG0725|consen 145 IVNISSVAGVGPG---------PGS----------------------------GVAYGVSKAALLQLTRSLAKELAKHGI 187 (270)
T ss_pred EEEEeccccccCC---------CCC----------------------------cccchhHHHHHHHHHHHHHHHHhhcCc
Confidence 7888886443211 000 12499999999999877653 89
Q ss_pred CEEEEecccccCCC
Q psy11859 431 PVVIVRPSIVLPSF 444 (851)
Q Consensus 431 ~~~ivRp~~V~G~~ 444 (851)
.+-.|=||.|..+.
T Consensus 188 RvN~v~PG~i~T~~ 201 (270)
T KOG0725|consen 188 RVNSVSPGLVKTSL 201 (270)
T ss_pred EEEEeecCcEeCCc
Confidence 99999999888775
|
|
| >PLN03086 PRLI-interacting factor K; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2e-08 Score=114.86 Aligned_cols=91 Identities=16% Similarity=0.259 Sum_probs=78.6
Q ss_pred eeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccC--------
Q psy11859 692 FTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSR-------- 763 (851)
Q Consensus 692 ~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~-------- 763 (851)
+.|+.|++.|. ...|..|+.+|+ +|+.| + ||+.+ .+..|..|+.+|.+++|+.|. .|++.|..
T Consensus 454 ~~C~~Cgk~f~-~s~LekH~~~~H--kpv~C--p-Cg~~~-~R~~L~~H~~thCp~Kpi~C~--fC~~~v~~g~~~~d~~ 524 (567)
T PLN03086 454 VHCEKCGQAFQ-QGEMEKHMKVFH--EPLQC--P-CGVVL-EKEQMVQHQASTCPLRLITCR--FCGDMVQAGGSAMDVR 524 (567)
T ss_pred ccCCCCCCccc-hHHHHHHHHhcC--CCccC--C-CCCCc-chhHHHhhhhccCCCCceeCC--CCCCccccCccccchh
Confidence 47999999996 678999999885 89999 7 99765 678999999999999999998 89999852
Q ss_pred --chhHHHhhhhcCCCCCccCCCCCCccccc
Q psy11859 764 --SDELSRHRRSHFGIKPYPCTLCVKKSLLA 792 (851)
Q Consensus 764 --~~~L~~H~r~H~gekp~~C~~Cgk~f~~~ 792 (851)
...|..|...+ |.+++.|..||+.+.++
T Consensus 525 d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrlr 554 (567)
T PLN03086 525 DRLRGMSEHESIC-GSRTAPCDSCGRSVMLK 554 (567)
T ss_pred hhhhhHHHHHHhc-CCcceEccccCCeeeeh
Confidence 35799999886 99999999999976553
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.2e-07 Score=97.17 Aligned_cols=184 Identities=12% Similarity=0.059 Sum_probs=110.9
Q ss_pred cCCCEEEEecC--ccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcc-cCCCeEEEEc
Q psy11859 216 YAGRSVLVTGG--TGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPA-QLSRLHIIEG 292 (851)
Q Consensus 216 ~~~k~VlVTGa--tGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~-~~~~v~~v~g 292 (851)
++||++||||| +.=||..+++.|.+.| .+|++ .|..... +++..-....-++.++..... .......+.+
T Consensus 7 l~gk~alITGa~~s~GIG~a~A~~la~~G---a~Vv~-~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (303)
T PLN02730 7 LRGKRAFIAGVADDNGYGWAIAKALAAAG---AEILV-GTWVPAL---NIFETSLRRGKFDESRKLPDGSLMEITKVYPL 79 (303)
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHHCC---CEEEE-EeCcchh---hHHHHhhhccccchhhhcccccccCcCeeeec
Confidence 78999999999 7999999999999999 67776 5543321 222111110001111111000 0112456788
Q ss_pred CC--CCCc-C-----------CCCHHHHHHHh-------cCccEEEEccccC-----Cc----chhHHHHHHHHHHHHHH
Q psy11859 293 DI--LQAN-L-----------GIKDSDLLMLQ-------EEVSVVFNGAASL-----KL----EAELKENVAANTRGTQR 342 (851)
Q Consensus 293 Di--~~~~-l-----------gls~~~~~~~~-------~~vd~ViH~AA~~-----~~----~~~~~~~~~~Nv~Gt~~ 342 (851)
|+ ++++ + +-+++++..++ ..+|++||+||.. .+ .+.++..+++|+.|+..
T Consensus 80 D~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~ 159 (303)
T PLN02730 80 DAVFDTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVS 159 (303)
T ss_pred ceecCccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHH
Confidence 88 3322 0 00112333332 3589999999642 12 14567889999999999
Q ss_pred HHHHHHhc-CCceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHH
Q psy11859 343 LLDIALKM-KKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTET 421 (851)
Q Consensus 343 ll~~a~~~-~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~ 421 (851)
+.+++... ..--++|++||..+.. +.|.. ...|+.||+.-+.
T Consensus 160 l~~~~~p~m~~~G~II~isS~a~~~----------~~p~~---------------------------~~~Y~asKaAl~~ 202 (303)
T PLN02730 160 LLQHFGPIMNPGGASISLTYIASER----------IIPGY---------------------------GGGMSSAKAALES 202 (303)
T ss_pred HHHHHHHHHhcCCEEEEEechhhcC----------CCCCC---------------------------chhhHHHHHHHHH
Confidence 98887653 1114799999854321 11110 0139999999988
Q ss_pred HHHHHhC------CCCEEEEecccccCC
Q psy11859 422 LVDEYKT------KLPVVIVRPSIVLPS 443 (851)
Q Consensus 422 ~v~~~~~------~l~~~ivRp~~V~G~ 443 (851)
+.+..+. ++.+..|-||.|--+
T Consensus 203 l~~~la~El~~~~gIrVn~V~PG~v~T~ 230 (303)
T PLN02730 203 DTRVLAFEAGRKYKIRVNTISAGPLGSR 230 (303)
T ss_pred HHHHHHHHhCcCCCeEEEEEeeCCccCc
Confidence 7765432 688899999887654
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.1e-07 Score=101.48 Aligned_cols=122 Identities=11% Similarity=-0.009 Sum_probs=87.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
.+.++|.||||+|.||+.++..|+..+ ...+|.++++.... .. ..++.+ .... ....+.+
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~-~~~elvL~Di~~~~--g~--a~Dl~~-------------~~~~--~~v~~~t 65 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNP-HVSELSLYDIVGAP--GV--AADLSH-------------IDTP--AKVTGYA 65 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCC-CCCEEEEEecCCCc--cc--ccchhh-------------cCcC--ceEEEec
Confidence 456799999999999999999888553 44789999983211 10 001100 0111 2344555
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeee
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFC 364 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~ 364 (851)
+++ +....++++|+||++||...- ..+..+.+..|+.+++++++++++++ ++++|.++|..+
T Consensus 66 d~~------~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~-~~~iviv~SNPv 128 (321)
T PTZ00325 66 DGE------LWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSA-PKAIVGIVSNPV 128 (321)
T ss_pred CCC------chHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 554 445677899999999998654 35667889999999999999999985 999999999533
|
|
| >KOG4169|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.6e-08 Score=95.85 Aligned_cols=126 Identities=22% Similarity=0.286 Sum_probs=88.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++++|||.|=||..+..+|+..+ ++.+.++.|-++. . .+..|++-.| ..++.++..|++
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kg--ik~~~i~~~~En~-~------------a~akL~ai~p--~~~v~F~~~DVt 65 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKG--IKVLVIDDSEENP-E------------AIAKLQAINP--SVSVIFIKCDVT 65 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcC--chheeehhhhhCH-H------------HHHHHhccCC--CceEEEEEeccc
Confidence 469999999999999999999999986 3555565565541 1 1222333333 348999999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCcchhHHHHHHHHHHHHHH----HHHHHHhc--CCceEEEEeeee
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKLEAELKENVAANTRGTQR----LLDIALKM--KKLVAFIHFSTA 362 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~----ll~~a~~~--~~~~~fV~vSTa 362 (851)
+.. +++..++ .+|++|+.|+... +.+++..+.+|+.|..+ .|....+. |.---+|.+||+
T Consensus 66 ~~~------~~~~~f~ki~~~fg~iDIlINgAGi~~-dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv 138 (261)
T KOG4169|consen 66 NRG------DLEAAFDKILATFGTIDILINGAGILD-DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSV 138 (261)
T ss_pred cHH------HHHHHHHHHHHHhCceEEEEccccccc-chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccc
Confidence 865 5555543 6899999999865 66788889999766554 44444332 123468999997
Q ss_pred eee
Q psy11859 363 FCH 365 (851)
Q Consensus 363 ~~~ 365 (851)
++.
T Consensus 139 ~GL 141 (261)
T KOG4169|consen 139 AGL 141 (261)
T ss_pred ccc
Confidence 663
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.8e-07 Score=102.01 Aligned_cols=182 Identities=16% Similarity=0.046 Sum_probs=116.4
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
.++|.||||+|.||+.++..|+..+ -+.++.++++.... .. ..++.+ ..... ...++++.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~-~~~el~L~Di~~~~--g~--a~Dl~~-------------~~~~~--~i~~~~~~ 77 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNP-LVSELHLYDIANTP--GV--AADVSH-------------INTPA--QVRGFLGD 77 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC-CCCEEEEEecCCCC--ee--Echhhh-------------CCcCc--eEEEEeCC
Confidence 4689999999999999999888653 44689999886611 10 001100 00111 22343333
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccC
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLY 376 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~ 376 (851)
+ ++...+.++|+|||+||.... ..+..+.+..|+..++++++.+.+.+ +.++|.++|-
T Consensus 78 ~------d~~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSN-------------- 136 (323)
T PLN00106 78 D------QLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISN-------------- 136 (323)
T ss_pred C------CHHHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCC--------------
Confidence 3 566778999999999998765 35678899999999999999999996 8999999992
Q ss_pred CCCCCHH-HHHHHHhhccHHHHhhhCCcccC-CCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCC-C-CCchh
Q psy11859 377 PSPVSPH-DIMRAMEWMDDETIKQLTPKILG-PHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSF-Q-EPVPG 450 (851)
Q Consensus 377 ~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~-~-~p~p~ 450 (851)
|.+.. .++. ..+. +..+ +.-+.||.++.-.+++-..+++ +++..-++ +.|+|.. + +-+|.
T Consensus 137 --PvD~~~~i~t-------~~~~----~~s~~p~~~viG~~~LDs~Rl~~~lA~~lgv~~~~V~-~~ViGeHg~~s~vp~ 202 (323)
T PLN00106 137 --PVNSTVPIAA-------EVLK----KAGVYDPKKLFGVTTLDVVRANTFVAEKKGLDPADVD-VPVVGGHAGITILPL 202 (323)
T ss_pred --CccccHHHHH-------HHHH----HcCCCCcceEEEEecchHHHHHHHHHHHhCCChhheE-EEEEEeCCCccEeee
Confidence 22200 0000 0000 0000 0124588888778787766665 77776664 4455555 4 45676
Q ss_pred Hhhh
Q psy11859 451 WVDS 454 (851)
Q Consensus 451 ~i~~ 454 (851)
|-..
T Consensus 203 ~S~~ 206 (323)
T PLN00106 203 LSQA 206 (323)
T ss_pred hhcc
Confidence 6543
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.1e-06 Score=83.29 Aligned_cols=159 Identities=14% Similarity=0.103 Sum_probs=109.1
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|.|.||||-+|++|+++.+++| +.|.+++|+..... ..+.+.+++.||-|+.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG---HeVTAivRn~~K~~-----------------------~~~~~~i~q~Difd~~ 54 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG---HEVTAIVRNASKLA-----------------------ARQGVTILQKDIFDLT 54 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC---CeeEEEEeChHhcc-----------------------ccccceeecccccChh
Confidence 689999999999999999999999 78999999875432 1147889999999987
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeee-CCCcccccccCC
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCH-PDQKVLEEKLYP 377 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~-~~~~~i~E~~~~ 377 (851)
.+...+.+.|+||-+-+....+ +... -+.....|+++.+..+ +.|++-|.-|.+- -+...--.+.++
T Consensus 55 ------~~a~~l~g~DaVIsA~~~~~~~-~~~~----~~k~~~~li~~l~~ag-v~RllVVGGAGSL~id~g~rLvD~p~ 122 (211)
T COG2910 55 ------SLASDLAGHDAVISAFGAGASD-NDEL----HSKSIEALIEALKGAG-VPRLLVVGGAGSLEIDEGTRLVDTPD 122 (211)
T ss_pred ------hhHhhhcCCceEEEeccCCCCC-hhHH----HHHHHHHHHHHHhhcC-CeeEEEEcCccceEEcCCceeecCCC
Confidence 6778889999999765433211 1111 1222566777777765 8899888765331 111111122233
Q ss_pred CCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHH-hCCCCEEEEecccccCCC
Q psy11859 378 SPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY-KTKLPVVIVRPSIVLPSF 444 (851)
Q Consensus 378 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~-~~~l~~~ivRp~~V~G~~ 444 (851)
-|..+ |..++..||.+=.-- .+.+.++-+=|+..+-|+
T Consensus 123 fP~ey-----------------------------~~~A~~~ae~L~~Lr~~~~l~WTfvSPaa~f~PG 161 (211)
T COG2910 123 FPAEY-----------------------------KPEALAQAEFLDSLRAEKSLDWTFVSPAAFFEPG 161 (211)
T ss_pred CchhH-----------------------------HHHHHHHHHHHHHHhhccCcceEEeCcHHhcCCc
Confidence 33333 788899999543222 237999999999888774
|
|
| >KOG1610|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-06 Score=92.73 Aligned_cols=163 Identities=18% Similarity=0.282 Sum_probs=115.8
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
+-..+|.|||||+--=.|..|+.+|.+.| ..|++-.-.+.+. +.+. .+. ..+++..+..|
T Consensus 25 ~~~~~k~VlITGCDSGfG~~LA~~L~~~G---f~V~Agcl~~~ga---e~L~------------~~~--~s~rl~t~~LD 84 (322)
T KOG1610|consen 25 DSLSDKAVLITGCDSGFGRLLAKKLDKKG---FRVFAGCLTEEGA---ESLR------------GET--KSPRLRTLQLD 84 (322)
T ss_pred cccCCcEEEEecCCcHHHHHHHHHHHhcC---CEEEEEeecCchH---HHHh------------hhh--cCCcceeEeec
Confidence 34577899999999999999999999999 6787777544442 1121 111 14588889999
Q ss_pred CCCCcCCCCHHHHHHHhc---------CccEEEEccccCCcc--------hhHHHHHHHHHHHHHHHHHHH----HhcCC
Q psy11859 294 ILQANLGIKDSDLLMLQE---------EVSVVFNGAASLKLE--------AELKENVAANTRGTQRLLDIA----LKMKK 352 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~---------~vd~ViH~AA~~~~~--------~~~~~~~~~Nv~Gt~~ll~~a----~~~~~ 352 (851)
+++++ ++.++.+ +.=.|||+||...+- +.+...+++|..||.++-.+- +++.
T Consensus 85 VT~~e------si~~a~~~V~~~l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~ar- 157 (322)
T KOG1610|consen 85 VTKPE------SVKEAAQWVKKHLGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRAR- 157 (322)
T ss_pred cCCHH------HHHHHHHHHHHhcccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc-
Confidence 99987 6665543 345899999965431 456788999999988765544 4443
Q ss_pred ceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----
Q psy11859 353 LVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT---- 428 (851)
Q Consensus 353 ~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~---- 428 (851)
-|+|.+||..+- .+.+.. .+|+.||+..|........
T Consensus 158 -GRvVnvsS~~GR---------~~~p~~-----------------------------g~Y~~SK~aVeaf~D~lR~EL~~ 198 (322)
T KOG1610|consen 158 -GRVVNVSSVLGR---------VALPAL-----------------------------GPYCVSKFAVEAFSDSLRRELRP 198 (322)
T ss_pred -CeEEEecccccC---------ccCccc-----------------------------ccchhhHHHHHHHHHHHHHHHHh
Confidence 589999995431 111112 3499999999988765543
Q ss_pred -CCCEEEEecccccCC
Q psy11859 429 -KLPVVIVRPSIVLPS 443 (851)
Q Consensus 429 -~l~~~ivRp~~V~G~ 443 (851)
|+.++|+=|| ++-+
T Consensus 199 fGV~VsiiePG-~f~T 213 (322)
T KOG1610|consen 199 FGVKVSIIEPG-FFKT 213 (322)
T ss_pred cCcEEEEeccC-cccc
Confidence 9999999999 4544
|
|
| >PHA00733 hypothetical protein | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.7e-08 Score=91.22 Aligned_cols=79 Identities=24% Similarity=0.344 Sum_probs=59.0
Q ss_pred ceeecCCccccchhhhhhhc------ccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCc
Q psy11859 691 IFTQILPAYLVDFIMVLIRQ------KTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRS 764 (851)
Q Consensus 691 ~~~c~~c~~~~~~~~~l~~h------~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~ 764 (851)
++.|.+|.+.|.....|..| +..| +++||.| +.||+.|.+..+|..|++.| +.+|.|. .|++.|...
T Consensus 40 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~-~~kPy~C--~~Cgk~Fss~s~L~~H~r~h--~~~~~C~--~CgK~F~~~ 112 (128)
T PHA00733 40 RLIRAVVKTLIYNPQLLDESSYLYKLLTSK-AVSPYVC--PLCLMPFSSSVSLKQHIRYT--EHSKVCP--VCGKEFRNT 112 (128)
T ss_pred hHHHHHHhhhccChhhhcchHHHHhhcccC-CCCCccC--CCCCCcCCCHHHHHHHHhcC--CcCccCC--CCCCccCCH
Confidence 44788888888766555444 3333 4788888 78888888888888888876 3578887 888888888
Q ss_pred hhHHHhhhhcCC
Q psy11859 765 DELSRHRRSHFG 776 (851)
Q Consensus 765 ~~L~~H~r~H~g 776 (851)
..|.+|+...++
T Consensus 113 ~sL~~H~~~~h~ 124 (128)
T PHA00733 113 DSTLDHVCKKHN 124 (128)
T ss_pred HHHHHHHHHhcC
Confidence 888888776544
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2e-06 Score=84.78 Aligned_cols=162 Identities=24% Similarity=0.335 Sum_probs=109.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+.|-+||||||+.=||..|++++++.| .+|++-.|.. +|+++.. .+ .+.+....+|+.
T Consensus 3 ~tgnTiLITGG~sGIGl~lak~f~elg---N~VIi~gR~e------~~L~e~~---------~~----~p~~~t~v~Dv~ 60 (245)
T COG3967 3 TTGNTILITGGASGIGLALAKRFLELG---NTVIICGRNE------ERLAEAK---------AE----NPEIHTEVCDVA 60 (245)
T ss_pred ccCcEEEEeCCcchhhHHHHHHHHHhC---CEEEEecCcH------HHHHHHH---------hc----Ccchheeeeccc
Confidence 467899999999999999999999998 7888888864 4554432 22 245677889999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCC---c---ch---hHHHHHHHHHHHHHHHHHHHHhcC---CceEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLK---L---EA---ELKENVAANTRGTQRLLDIALKMK---KLVAF 356 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~---~---~~---~~~~~~~~Nv~Gt~~ll~~a~~~~---~~~~f 356 (851)
|.+ .++++.+ ..+++|++||.-. + ++ ...+-+.+|..++.+|..+...+= .-..+
T Consensus 61 d~~------~~~~lvewLkk~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~I 134 (245)
T COG3967 61 DRD------SRRELVEWLKKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATI 134 (245)
T ss_pred chh------hHHHHHHHHHhhCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceE
Confidence 886 4444432 5799999999753 2 12 234568999999999877765421 13568
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~ 431 (851)
|.|||.-++.+. ...| +|..||+.--..-..... ++.
T Consensus 135 InVSSGLafvPm----------~~~P----------------------------vYcaTKAaiHsyt~aLR~Qlk~t~ve 176 (245)
T COG3967 135 INVSSGLAFVPM----------ASTP----------------------------VYCATKAAIHSYTLALREQLKDTSVE 176 (245)
T ss_pred EEeccccccCcc----------cccc----------------------------cchhhHHHHHHHHHHHHHHhhhcceE
Confidence 999995443221 1112 399999876654433322 566
Q ss_pred EEEEecccccCC
Q psy11859 432 VVIVRPSIVLPS 443 (851)
Q Consensus 432 ~~ivRp~~V~G~ 443 (851)
|+=+-|+.|--+
T Consensus 177 VIE~~PP~V~t~ 188 (245)
T COG3967 177 VIELAPPLVDTT 188 (245)
T ss_pred EEEecCCceecC
Confidence 666667666543
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.8e-07 Score=100.63 Aligned_cols=131 Identities=18% Similarity=0.134 Sum_probs=85.8
Q ss_pred HHHhhhhhhhhhhhhcccccCCCCCCCCC-----CccCcccCcc------------cccccccccCccccccccchhhhc
Q psy11859 154 LSELISHSLYCRQRIKYECHQAPLDLHSA-----TWFTSAANQS------------VDYVGDVKRGSCECADMGDVARWY 216 (851)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~i~~~~ 216 (851)
+..-++.++..++.+..+++.+++..+.. ...++.++++ .+.+ .+.++. ..+...+
T Consensus 81 ~~~a~~~a~~~G~~i~~Lg~~tsiv~~~~~~~~~~~~r~i~ie~~~~TtGNs~T~~ll~~-~V~la~------~~lg~~l 153 (340)
T PRK14982 81 VLNAMALAQKKGINITALGGFSSIIFENFNLLQHKQVRNTTLEWERFTTGNTHTAYVICR-QVEQNA------PRLGIDL 153 (340)
T ss_pred HHHHHHHHHHCCCeEEEcCChHHHhcCCcccccccccccceeccccccCCchhHHHHHHH-HHHHhH------HHhccCc
Confidence 33446778888899999999999875543 2444555554 2221 222222 3344468
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++++|+||||||+||+.++++|++.+ ++.+|+++.|... ++.++. .+ +..+|+.
T Consensus 154 ~~k~VLVtGAtG~IGs~lar~L~~~~-gv~~lilv~R~~~------rl~~La---------~e---------l~~~~i~- 207 (340)
T PRK14982 154 SKATVAVVGATGDIGSAVCRWLDAKT-GVAELLLVARQQE------RLQELQ---------AE---------LGGGKIL- 207 (340)
T ss_pred CCCEEEEEccChHHHHHHHHHHHhhC-CCCEEEEEcCCHH------HHHHHH---------HH---------hccccHH-
Confidence 99999999999999999999998652 3478999888632 222211 11 1124443
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCc
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKL 325 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~ 325 (851)
++...+.++|+|||+|+..+.
T Consensus 208 --------~l~~~l~~aDiVv~~ts~~~~ 228 (340)
T PRK14982 208 --------SLEEALPEADIVVWVASMPKG 228 (340)
T ss_pred --------hHHHHHccCCEEEECCcCCcC
Confidence 345677899999999998654
|
|
| >PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.8e-08 Score=65.18 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=24.4
Q ss_pred HHHHHHHhhcCCcchhhhhhHHhhhc
Q psy11859 824 HLAKHLKVHERQKYKMMMKSMRKMKN 849 (851)
Q Consensus 824 ~L~~H~r~Htgek~~~C~~c~~~f~~ 849 (851)
+|++|+++|+|+|||.|+.|+++|++
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence 58999999999999999999999975
|
... |
| >PHA00733 hypothetical protein | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.8e-08 Score=89.62 Aligned_cols=84 Identities=18% Similarity=0.197 Sum_probs=67.0
Q ss_pred hhhhhhhcccccCCcccccccCCccCccccChhhHHHH--H---hhhcCCCccccCccccCccccCchhHHHhhhhcCCC
Q psy11859 703 FIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAH--L---RRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777 (851)
Q Consensus 703 ~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H--~---~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~ge 777 (851)
+...|.++...-...+++.| ..|.+.|.....|..| . ..+.+++||.|+ .|++.|.+...|..|++.| +
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~--~Cgk~Fss~s~L~~H~r~h--~ 97 (128)
T PHA00733 24 TLEELKRYHSLTPEQKRLIR--AVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCP--LCLMPFSSSVSLKQHIRYT--E 97 (128)
T ss_pred CHHHhhhhhcCChhhhhHHH--HHHhhhccChhhhcchHHHHhhcccCCCCCccCC--CCCCcCCCHHHHHHHHhcC--C
Confidence 34567777777777899999 7899999887766655 1 133458899998 8999999999999999987 4
Q ss_pred CCccCCCCCCccccc
Q psy11859 778 KPYPCTLCVKKSLLA 792 (851)
Q Consensus 778 kp~~C~~Cgk~f~~~ 792 (851)
++|.|+.|++.|...
T Consensus 98 ~~~~C~~CgK~F~~~ 112 (128)
T PHA00733 98 HSKVCPVCGKEFRNT 112 (128)
T ss_pred cCccCCCCCCccCCH
Confidence 689999999977553
|
|
| >KOG1611|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.8e-06 Score=83.01 Aligned_cols=167 Identities=22% Similarity=0.258 Sum_probs=105.3
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
..++||||||.-=||--|+++|++. +++..|+...|..... .+.+. ++....+++++++.|++.
T Consensus 2 spksv~ItGaNRGIGlgLVk~llk~-~~i~~iiat~r~~e~a--~~~l~-------------~k~~~d~rvHii~Ldvt~ 65 (249)
T KOG1611|consen 2 SPKSVFITGANRGIGLGLVKELLKD-KGIEVIIATARDPEKA--ATELA-------------LKSKSDSRVHIIQLDVTC 65 (249)
T ss_pred CCccEEEeccCcchhHHHHHHHhcC-CCcEEEEEecCChHHh--hHHHH-------------HhhccCCceEEEEEeccc
Confidence 3467999999999999999999976 6666666666643221 11111 111234699999999997
Q ss_pred CcCCCCHHHHHHH---------hcCccEEEEccccCCc----ch----hHHHHHHHHHHHHHHHHHHH----HhcC----
Q psy11859 297 ANLGIKDSDLLML---------QEEVSVVFNGAASLKL----EA----ELKENVAANTRGTQRLLDIA----LKMK---- 351 (851)
Q Consensus 297 ~~lgls~~~~~~~---------~~~vd~ViH~AA~~~~----~~----~~~~~~~~Nv~Gt~~ll~~a----~~~~---- 351 (851)
.+ ++..+ ..+.|+.|+.||.... .+ .+-+.+++|+.|+..+.++. ++..
T Consensus 66 de------S~~~~~~~V~~iVg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~ 139 (249)
T KOG1611|consen 66 DE------SIDNFVQEVEKIVGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVS 139 (249)
T ss_pred HH------HHHHHHHHHHhhcccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccc
Confidence 65 44333 2367899999996532 12 24467999999987766543 2221
Q ss_pred ------CceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHH
Q psy11859 352 ------KLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDE 425 (851)
Q Consensus 352 ------~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~ 425 (851)
....+|++||..+.-. ...+.+. .+|..||++--...++
T Consensus 140 gd~~s~~raaIinisS~~~s~~------~~~~~~~-----------------------------~AYrmSKaAlN~f~ks 184 (249)
T KOG1611|consen 140 GDGLSVSRAAIINISSSAGSIG------GFRPGGL-----------------------------SAYRMSKAALNMFAKS 184 (249)
T ss_pred CCcccccceeEEEeeccccccC------CCCCcch-----------------------------hhhHhhHHHHHHHHHH
Confidence 1237888888543211 1112223 3499999998888877
Q ss_pred HhC-----CCCEEEEecccc
Q psy11859 426 YKT-----KLPVVIVRPSIV 440 (851)
Q Consensus 426 ~~~-----~l~~~ivRp~~V 440 (851)
.+- ++-++.+-||+|
T Consensus 185 ls~dL~~~~ilv~sihPGwV 204 (249)
T KOG1611|consen 185 LSVDLKDDHILVVSIHPGWV 204 (249)
T ss_pred hhhhhcCCcEEEEEecCCeE
Confidence 653 333455555554
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.6e-06 Score=88.81 Aligned_cols=157 Identities=20% Similarity=0.238 Sum_probs=111.7
Q ss_pred cCc--cHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcCCCC
Q psy11859 225 GGT--GFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLGIK 302 (851)
Q Consensus 225 Gat--GFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lgls 302 (851)
|++ +=||..++++|++.| .+|++..|..... .+.+. .+.++.+ ..++.+|+++++
T Consensus 1 g~~~s~GiG~aia~~l~~~G---a~V~~~~~~~~~~--~~~~~---------~l~~~~~-----~~~~~~D~~~~~---- 57 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEG---ANVILTDRNEEKL--ADALE---------ELAKEYG-----AEVIQCDLSDEE---- 57 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTT---EEEEEEESSHHHH--HHHHH---------HHHHHTT-----SEEEESCTTSHH----
T ss_pred CCCCCCChHHHHHHHHHHCC---CEEEEEeCChHHH--HHHHH---------HHHHHcC-----CceEeecCcchH----
Confidence 677 999999999999999 8999999986421 11222 2222322 225999999876
Q ss_pred HHHHHHH-------h-cCccEEEEccccCCc-----------chhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEeeee
Q psy11859 303 DSDLLML-------Q-EEVSVVFNGAASLKL-----------EAELKENVAANTRGTQRLLDIALKM-KKLVAFIHFSTA 362 (851)
Q Consensus 303 ~~~~~~~-------~-~~vd~ViH~AA~~~~-----------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~vSTa 362 (851)
++..+ . .++|++||+|+.... .+.+...+++|+.++..+++++... ..-.++|++||.
T Consensus 58 --~v~~~~~~~~~~~~g~iD~lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~ 135 (241)
T PF13561_consen 58 --SVEALFDEAVERFGGRIDILVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSI 135 (241)
T ss_dssp --HHHHHHHHHHHHHCSSESEEEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEG
T ss_pred --HHHHHHHHHHhhcCCCeEEEEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccch
Confidence 55555 3 568999999987653 1345678999999999999988542 123678999885
Q ss_pred eeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C--CCCEEEEe
Q psy11859 363 FCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T--KLPVVIVR 436 (851)
Q Consensus 363 ~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~--~l~~~ivR 436 (851)
..... .|. ...|+.+|+.-|.+++..+ + ++.+..|.
T Consensus 136 ~~~~~----------~~~----------------------------~~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~ 177 (241)
T PF13561_consen 136 AAQRP----------MPG----------------------------YSAYSASKAALEGLTRSLAKELAPKKGIRVNAVS 177 (241)
T ss_dssp GGTSB----------STT----------------------------THHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEE
T ss_pred hhccc----------Ccc----------------------------chhhHHHHHHHHHHHHHHHHHhccccCeeeeeec
Confidence 43211 111 1349999999999887653 3 79999999
Q ss_pred cccccCCC
Q psy11859 437 PSIVLPSF 444 (851)
Q Consensus 437 p~~V~G~~ 444 (851)
||.|-.+.
T Consensus 178 pG~i~t~~ 185 (241)
T PF13561_consen 178 PGPIETPM 185 (241)
T ss_dssp ESSBSSHH
T ss_pred ccceeccc
Confidence 99888653
|
... |
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.2e-05 Score=87.58 Aligned_cols=186 Identities=10% Similarity=0.051 Sum_probs=105.2
Q ss_pred cCCCEEEEecCc--cHHHHHHHHHHHHhCCCccEEEEEecCCC------CCCHHHHHHHH---hcCh--hhHHHhhhCcc
Q psy11859 216 YAGRSVLVTGGT--GFMGKVLLEKLLRSCPDIGKVYILCRAKR------GLTPKARLAEF---SKLP--VFERLRKECPA 282 (851)
Q Consensus 216 ~~~k~VlVTGat--GFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~------~~~~~~rl~~~---~~~~--~f~~l~~~~~~ 282 (851)
++||+++||||+ .-||..+++.|.++| .+|++..+... ..... +.... .... .+.+..... .
T Consensus 6 ~~gk~alITGa~~~~GIG~a~A~~la~~G---a~Vvv~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~-~ 80 (299)
T PRK06300 6 LTGKIAFIAGIGDDQGYGWGIAKALAEAG---ATILVGTWVPIYKIFSQSLELG-KFDASRKLSNGSLLTFAKIYPMD-A 80 (299)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCC---CEEEEEeccchhhhhhhhcccc-cccccccccccchhhhhhHHHhh-h
Confidence 478999999995 899999999999999 77877654310 00000 00000 0000 000000000 0
Q ss_pred cCCCeEEEEcCCCCCcC--CCCHHHHHHH-------hcCccEEEEccccCC-----c----chhHHHHHHHHHHHHHHHH
Q psy11859 283 QLSRLHIIEGDILQANL--GIKDSDLLML-------QEEVSVVFNGAASLK-----L----EAELKENVAANTRGTQRLL 344 (851)
Q Consensus 283 ~~~~v~~v~gDi~~~~l--gls~~~~~~~-------~~~vd~ViH~AA~~~-----~----~~~~~~~~~~Nv~Gt~~ll 344 (851)
.....+-+..||++... -++++++..+ ..++|++||+||... + .+.+...+++|+.|+.++.
T Consensus 81 d~~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~ 160 (299)
T PRK06300 81 SFDTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLL 160 (299)
T ss_pred hcCCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHH
Confidence 01122334444443210 0111222222 236899999997532 2 1356678999999999999
Q ss_pred HHHHhc-CCceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHH
Q psy11859 345 DIALKM-KKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLV 423 (851)
Q Consensus 345 ~~a~~~-~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v 423 (851)
+++... ..-.++|.+||..+.. +.|.. ...|+.||+.-+.+.
T Consensus 161 ~a~~p~m~~~G~ii~iss~~~~~----------~~p~~---------------------------~~~Y~asKaAl~~lt 203 (299)
T PRK06300 161 SHFGPIMNPGGSTISLTYLASMR----------AVPGY---------------------------GGGMSSAKAALESDT 203 (299)
T ss_pred HHHHHHhhcCCeEEEEeehhhcC----------cCCCc---------------------------cHHHHHHHHHHHHHH
Confidence 988752 1124688888743321 11110 013999999998877
Q ss_pred HHHh----C--CCCEEEEecccccCC
Q psy11859 424 DEYK----T--KLPVVIVRPSIVLPS 443 (851)
Q Consensus 424 ~~~~----~--~l~~~ivRp~~V~G~ 443 (851)
+.++ . ++.+..|-||.|--+
T Consensus 204 ~~la~el~~~~gIrVn~V~PG~v~T~ 229 (299)
T PRK06300 204 KVLAWEAGRRWGIRVNTISAGPLASR 229 (299)
T ss_pred HHHHHHhCCCCCeEEEEEEeCCccCh
Confidence 6543 2 688999999987654
|
|
| >KOG1200|consensus | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.8e-06 Score=79.51 Aligned_cols=191 Identities=18% Similarity=0.248 Sum_probs=128.3
Q ss_pred chhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEE
Q psy11859 211 DVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHII 290 (851)
Q Consensus 211 ~i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v 290 (851)
...+-.+.+..+||||+.=||+.++..|.+.| .+|.+.++...+. ++-...+- .. ..-..+
T Consensus 7 ~~~~r~~sk~~~vtGg~sGIGrAia~~la~~G---arv~v~dl~~~~A--~ata~~L~-------------g~-~~h~aF 67 (256)
T KOG1200|consen 7 EVVQRLMSKVAAVTGGSSGIGRAIAQLLAKKG---ARVAVADLDSAAA--EATAGDLG-------------GY-GDHSAF 67 (256)
T ss_pred HHHHHHhcceeEEecCCchHHHHHHHHHHhcC---cEEEEeecchhhH--HHHHhhcC-------------CC-Ccccee
Confidence 35556778899999999999999999999998 7888777766542 22222221 11 234467
Q ss_pred EcCCCCCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc-----C
Q psy11859 291 EGDILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM-----K 351 (851)
Q Consensus 291 ~gDi~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~-----~ 351 (851)
.+|++++. +....+ ..++++++||+..+- .+.|++.+.+|+.|+..+-++|.+. .
T Consensus 68 ~~DVS~a~------~v~~~l~e~~k~~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~ 141 (256)
T KOG1200|consen 68 SCDVSKAH------DVQNTLEEMEKSLGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQ 141 (256)
T ss_pred eeccCcHH------HHHHHHHHHHHhcCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcC
Confidence 99999886 444422 368999999998753 3678899999999999988888664 1
Q ss_pred CceEEEEeeeeee-eCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCC
Q psy11859 352 KLVAFIHFSTAFC-HPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKL 430 (851)
Q Consensus 352 ~~~~fV~vSTa~~-~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l 430 (851)
+--++|.+||+-+ -|+- -...|...- ...-|+||.+|..+... ++
T Consensus 142 ~~~sIiNvsSIVGkiGN~---GQtnYAAsK----------------------------~GvIgftktaArEla~k---nI 187 (256)
T KOG1200|consen 142 QGLSIINVSSIVGKIGNF---GQTNYAASK----------------------------GGVIGFTKTAARELARK---NI 187 (256)
T ss_pred CCceEEeehhhhcccccc---cchhhhhhc----------------------------CceeeeeHHHHHHHhhc---Cc
Confidence 2348999999633 1111 001111000 11256677777665433 89
Q ss_pred CEEEEecccccCCCCCCc-hhHhhhhcCCce
Q psy11859 431 PVVIVRPSIVLPSFQEPV-PGWVDSLNGPVG 460 (851)
Q Consensus 431 ~~~ivRp~~V~G~~~~p~-p~~i~~~~~~~~ 460 (851)
++-+|-||.|--|--+.+ |...+.+.+..|
T Consensus 188 rvN~VlPGFI~tpMT~~mp~~v~~ki~~~iP 218 (256)
T KOG1200|consen 188 RVNVVLPGFIATPMTEAMPPKVLDKILGMIP 218 (256)
T ss_pred eEeEeccccccChhhhhcCHHHHHHHHccCC
Confidence 999999999988876654 455566655544
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.8e-06 Score=86.44 Aligned_cols=99 Identities=15% Similarity=0.202 Sum_probs=70.2
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|+|||||||+|. +++.|++.| .+|.++.|.... ..++ ....+. ..++.++.+|++|++
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G---~~V~v~~R~~~~------~~~l---------~~~l~~-~~~i~~~~~Dv~d~~ 60 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKG---FHVSVIARREVK------LENV---------KRESTT-PESITPLPLDYHDDD 60 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCc---CEEEEEECCHHH------HHHH---------HHHhhc-CCcEEEEEccCCCHH
Confidence 57999999999987 999999998 688888885321 1111 111111 247889999999986
Q ss_pred CCCCHHHHHHHhc-------CccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCce----EEEEe
Q psy11859 299 LGIKDSDLLMLQE-------EVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLV----AFIHF 359 (851)
Q Consensus 299 lgls~~~~~~~~~-------~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~----~fV~v 359 (851)
++..+++ .+|++|+.+ .+.++.++.++|++.+ ++ +|+|+
T Consensus 61 ------sv~~~i~~~l~~~g~id~lv~~v---------------h~~~~~~~~~~~~~~g-v~~~~~~~~h~ 110 (177)
T PRK08309 61 ------ALKLAIKSTIEKNGPFDLAVAWI---------------HSSAKDALSVVCRELD-GSSETYRLFHV 110 (177)
T ss_pred ------HHHHHHHHHHHHcCCCeEEEEec---------------cccchhhHHHHHHHHc-cCCCCceEEEE
Confidence 5555543 356666543 4457889999999986 88 88887
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.8e-06 Score=91.55 Aligned_cols=121 Identities=17% Similarity=0.029 Sum_probs=77.1
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCC----CccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCP----DIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~----~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
.+|+||||+||||++++..|+..+- .-.+|+++++............+ ..+-..+..+|+
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~D----------------l~d~~~~~~~~~ 66 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVME----------------LQDCAFPLLKSV 66 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeee----------------hhhccccccCCc
Confidence 4799999999999999999987531 11389999986532100000000 000000223344
Q ss_pred CCCcCCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 295 LQANLGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
.... ++...++++|+|||+|+.... ..+..+.++.|+.-.+.+.....++.....++.+-|
T Consensus 67 ~~~~------~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (325)
T cd01336 67 VATT------DPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG 128 (325)
T ss_pred eecC------CHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 4333 556677899999999998765 345578899999999999888877732344444433
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-06 Score=91.49 Aligned_cols=83 Identities=24% Similarity=0.302 Sum_probs=56.2
Q ss_pred cCCCEEEEecCc----------------cHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhh
Q psy11859 216 YAGRSVLVTGGT----------------GFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKE 279 (851)
Q Consensus 216 ~~~k~VlVTGat----------------GFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~ 279 (851)
++||+||||+|. ||+|++|++.|++.| ..|+++.+....... .
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~G---a~V~li~g~~~~~~~------------------~ 59 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKG---AHVIYLHGYFAEKPN------------------D 59 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCC---CeEEEEeCCCcCCCc------------------c
Confidence 478999999886 999999999999999 677777764332100 0
Q ss_pred CcccCCCeEEEEcCCCCCcCCCCHHHHHHHhc--CccEEEEccccCCcc
Q psy11859 280 CPAQLSRLHIIEGDILQANLGIKDSDLLMLQE--EVSVVFNGAASLKLE 326 (851)
Q Consensus 280 ~~~~~~~v~~v~gDi~~~~lgls~~~~~~~~~--~vd~ViH~AA~~~~~ 326 (851)
.+. ..++..+.+|....+ .+..+++ ++|+|||+||..+|.
T Consensus 60 ~~~-~~~~~~V~s~~d~~~------~l~~~~~~~~~D~VIH~AAvsD~~ 101 (229)
T PRK09620 60 INN-QLELHPFEGIIDLQD------KMKSIITHEKVDAVIMAAAGSDWV 101 (229)
T ss_pred cCC-ceeEEEEecHHHHHH------HHHHHhcccCCCEEEECcccccee
Confidence 000 113455666333222 4555563 689999999998775
|
|
| >KOG1207|consensus | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.4e-07 Score=86.05 Aligned_cols=165 Identities=24% Similarity=0.290 Sum_probs=114.8
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
.++.|+.|+||||.-=||+.++..|.+.| .+|+.+.|.+.+ + +.|-.+.| .-|+++.+|
T Consensus 3 t~laG~~vlvTgagaGIG~~~v~~La~aG---A~ViAvaR~~a~------L---------~sLV~e~p---~~I~Pi~~D 61 (245)
T KOG1207|consen 3 TSLAGVIVLVTGAGAGIGKEIVLSLAKAG---AQVIAVARNEAN------L---------LSLVKETP---SLIIPIVGD 61 (245)
T ss_pred ccccceEEEeecccccccHHHHHHHHhcC---CEEEEEecCHHH------H---------HHHHhhCC---cceeeeEec
Confidence 35789999999999999999999999998 789999997643 1 12222333 248999999
Q ss_pred CCCCcCCCCHHHHHHHhc---CccEEEEccccCC---cc----hhHHHHHHHHHHHHHHHHHHHHhc----CCceEEEEe
Q psy11859 294 ILQANLGIKDSDLLMLQE---EVSVVFNGAASLK---LE----AELKENVAANTRGTQRLLDIALKM----KKLVAFIHF 359 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~---~vd~ViH~AA~~~---~~----~~~~~~~~~Nv~Gt~~ll~~a~~~----~~~~~fV~v 359 (851)
+++-+ .+.+++- .+|..++.||..- |. ++.+..+++|+.+..++.+...+. ...-.+|.+
T Consensus 62 ls~we------a~~~~l~~v~pidgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNv 135 (245)
T KOG1207|consen 62 LSAWE------ALFKLLVPVFPIDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNV 135 (245)
T ss_pred ccHHH------HHHHhhcccCchhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEe
Confidence 99643 4444443 4689999998642 22 344566889999998888774331 123468999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..+. .|.+- ...|..||++-+++..-.+- ++.+-.
T Consensus 136 SSqas~------------R~~~n--------------------------HtvYcatKaALDmlTk~lAlELGp~kIRVNs 177 (245)
T KOG1207|consen 136 SSQASI------------RPLDN--------------------------HTVYCATKAALDMLTKCLALELGPQKIRVNS 177 (245)
T ss_pred cchhcc------------cccCC--------------------------ceEEeecHHHHHHHHHHHHHhhCcceeEeec
Confidence 995332 22221 14599999998887765432 778888
Q ss_pred EecccccCC
Q psy11859 435 VRPSIVLPS 443 (851)
Q Consensus 435 vRp~~V~G~ 443 (851)
+.|..|.-.
T Consensus 178 VNPTVVmT~ 186 (245)
T KOG1207|consen 178 VNPTVVMTD 186 (245)
T ss_pred cCCeEEEec
Confidence 888887643
|
|
| >PHA02768 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.1e-07 Score=71.21 Aligned_cols=42 Identities=33% Similarity=0.713 Sum_probs=23.1
Q ss_pred ccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhH
Q psy11859 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDEL 767 (851)
Q Consensus 720 ~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L 767 (851)
|+| +.||+.|.+.++|..|+++|+ +||+|. .|++.|.+.+.|
T Consensus 6 y~C--~~CGK~Fs~~~~L~~H~r~H~--k~~kc~--~C~k~f~~~s~l 47 (55)
T PHA02768 6 YEC--PICGEIYIKRKSMITHLRKHN--TNLKLS--NCKRISLRTGEY 47 (55)
T ss_pred cCc--chhCCeeccHHHHHHHHHhcC--CcccCC--cccceeccccee
Confidence 455 555555555555555555555 455554 555555554443
|
|
| >KOG1210|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.7e-06 Score=86.18 Aligned_cols=122 Identities=23% Similarity=0.268 Sum_probs=85.5
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
..|+||||+-=||..|+..+.++| ..|.++.|+.+......+.-++. ....+|.+..+|++|.+
T Consensus 34 ~hi~itggS~glgl~la~e~~~~g---a~Vti~ar~~~kl~~a~~~l~l~-------------~~~~~v~~~S~d~~~Y~ 97 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREG---ADVTITARSGKKLLEAKAELELL-------------TQVEDVSYKSVDVIDYD 97 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHcc---CceEEEeccHHHHHHHHhhhhhh-------------hccceeeEeccccccHH
Confidence 489999999999999999999999 77889999876532221111100 11234779999998776
Q ss_pred CCCCHHHHHHHhc-------CccEEEEccccCC---cc----hhHHHHHHHHHHHHHHHHHHHHh-cCCce---EEEEee
Q psy11859 299 LGIKDSDLLMLQE-------EVSVVFNGAASLK---LE----AELKENVAANTRGTQRLLDIALK-MKKLV---AFIHFS 360 (851)
Q Consensus 299 lgls~~~~~~~~~-------~vd~ViH~AA~~~---~~----~~~~~~~~~Nv~Gt~~ll~~a~~-~~~~~---~fV~vS 360 (851)
+...+++ .+|.+||||+..- |. +......++|..||.|++.++.. ++... +++.+|
T Consensus 98 ------~v~~~~~~l~~~~~~~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vs 171 (331)
T KOG1210|consen 98 ------SVSKVIEELRDLEGPIDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVS 171 (331)
T ss_pred ------HHHHHHhhhhhccCCcceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEeh
Confidence 4443332 4799999999642 21 23446799999999999988754 33223 788888
Q ss_pred ee
Q psy11859 361 TA 362 (851)
Q Consensus 361 Ta 362 (851)
|.
T Consensus 172 S~ 173 (331)
T KOG1210|consen 172 SQ 173 (331)
T ss_pred hh
Confidence 85
|
|
| >PHA02768 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=5e-07 Score=70.08 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=37.2
Q ss_pred ccccCccccCccccCchhHHHhhhhcCCCCCccCCCCCCcccccc
Q psy11859 749 SFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLLAI 793 (851)
Q Consensus 749 p~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~Cgk~f~~~~ 793 (851)
.|+|+ .||+.|++.++|..|+++|+ +||+|..|++.|...+
T Consensus 5 ~y~C~--~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s 45 (55)
T PHA02768 5 GYECP--ICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTG 45 (55)
T ss_pred ccCcc--hhCCeeccHHHHHHHHHhcC--CcccCCcccceecccc
Confidence 48998 99999999999999999999 7999999999887554
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=1e-05 Score=80.52 Aligned_cols=124 Identities=15% Similarity=0.126 Sum_probs=78.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++++||||+|.||..+++.|++.| .+|++++|.... .+.. -..+. ....++.++..|++
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G---~~V~l~~r~~~~---~~~~--------~~~l~----~~~~~~~~~~~Dl~ 75 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQG---AKVIVTDIDQES---GQAT--------VEEIT----NLGGEALFVSYDME 75 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCC---CEEEEEECCHHH---HHHH--------HHHHH----hcCCcEEEEEccCC
Confidence 689999999999999999999999988 688888886432 1111 01111 11235678899999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc----ch-hHHHHHHHHHHHHHHHHHHHHhc----C------Cc
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL----EA-ELKENVAANTRGTQRLLDIALKM----K------KL 353 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~----~~-~~~~~~~~Nv~Gt~~ll~~a~~~----~------~~ 353 (851)
++. ++..++ .++|++||+||.... ++ +...--.+|+.|+......+... + ..
T Consensus 76 ~~~------~v~~~v~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (169)
T PRK06720 76 KQG------DWQRVISITLNAFSRIDMLFQNAGLYKIDSIFSRQQENDSNVLCINDVWIEIKQLTSSFMKQQEEVVLSDL 149 (169)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccccchhHhhceeccHHHHHHHHHHHHHHhcCCEEEeecC
Confidence 875 444432 369999999996542 22 21122245555554443333221 1 25
Q ss_pred eEEEEeeeee
Q psy11859 354 VAFIHFSTAF 363 (851)
Q Consensus 354 ~~fV~vSTa~ 363 (851)
.+|..|||..
T Consensus 150 ~~~~~~~~~~ 159 (169)
T PRK06720 150 PIFGIIGTKG 159 (169)
T ss_pred ceeeEecccc
Confidence 6888888854
|
|
| >PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.7e-07 Score=59.23 Aligned_cols=24 Identities=50% Similarity=0.873 Sum_probs=15.5
Q ss_pred HHHhhhhcCCCCCccCCCCCCccc
Q psy11859 767 LSRHRRSHFGIKPYPCTLCVKKSL 790 (851)
Q Consensus 767 L~~H~r~H~gekp~~C~~Cgk~f~ 790 (851)
|.+|+++|+|++||.|+.|+++|.
T Consensus 2 l~~H~~~H~~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 2 LRRHMRTHTGEKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHHHHHHSSSSSEEESSSSEEES
T ss_pred HHHHhhhcCCCCCCCCCCCcCeeC
Confidence 566666666666666666666553
|
... |
| >KOG1209|consensus | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.6e-05 Score=78.78 Aligned_cols=119 Identities=19% Similarity=0.253 Sum_probs=83.4
Q ss_pred CCEEEEecC-ccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 218 GRSVLVTGG-TGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 218 ~k~VlVTGa-tGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
.+.|||||+ .|=||-+|..++.+.| ..|++..|.-... ..+. ...++.+...|+++
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G---~~V~AtaR~~e~M---~~L~-----------------~~~gl~~~kLDV~~ 63 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNG---YLVYATARRLEPM---AQLA-----------------IQFGLKPYKLDVSK 63 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCC---eEEEEEccccchH---hhHH-----------------HhhCCeeEEeccCC
Confidence 478999975 6999999999999999 8999998875432 1111 12368889999999
Q ss_pred CcCCCCHHHHHHHhc--------CccEEEEccccCCc----c---hhHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEe
Q psy11859 297 ANLGIKDSDLLMLQE--------EVSVVFNGAASLKL----E---AELKENVAANTRGTQRLLDIALKM--KKLVAFIHF 359 (851)
Q Consensus 297 ~~lgls~~~~~~~~~--------~vd~ViH~AA~~~~----~---~~~~~~~~~Nv~Gt~~ll~~a~~~--~~~~~fV~v 359 (851)
++ +...... +.|+.++.|+..-. + ...+..+++||.|..++-++...+ +.--.+|.+
T Consensus 64 ~~------~V~~v~~evr~~~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnv 137 (289)
T KOG1209|consen 64 PE------EVVTVSGEVRANPDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNV 137 (289)
T ss_pred hH------HHHHHHHHHhhCCCCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEe
Confidence 87 4443322 46899999986422 1 234567899999988777665432 112478999
Q ss_pred eeeeee
Q psy11859 360 STAFCH 365 (851)
Q Consensus 360 STa~~~ 365 (851)
.|..++
T Consensus 138 gSl~~~ 143 (289)
T KOG1209|consen 138 GSLAGV 143 (289)
T ss_pred cceeEE
Confidence 996554
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.5e-05 Score=84.53 Aligned_cols=185 Identities=14% Similarity=0.066 Sum_probs=115.3
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCC----CccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCP----DIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~----~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
.++|.|+||+|+||+.++-.|+..+- ....|.++++.+..........++... ......++.+..+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~---------~~~~~~~~~i~~~- 71 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDC---------AFPLLAEIVITDD- 71 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhc---------cccccCceEEecC-
Confidence 46899999999999999999986542 222799998854321111111111100 0000112222111
Q ss_pred CCCCcCCCCHHHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccc
Q psy11859 294 ILQANLGIKDSDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLE 372 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~ 372 (851)
+ ...++++|+||-+|+..+-+ .+-.+.+..|+.-.+.+.....+......++.+-|
T Consensus 72 -----------~-~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs----------- 128 (322)
T cd01338 72 -----------P-NVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG----------- 128 (322)
T ss_pred -----------c-HHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec-----------
Confidence 1 24468999999999986543 45567899999999999999988752244444434
Q ss_pred cccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCC--chhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC-
Q psy11859 373 EKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHP--NSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP- 447 (851)
Q Consensus 373 E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p- 447 (851)
+|++. +.-+ ..+..+++| +.||.|+.-.+++....++ +++...+|..+|+|++++-
T Consensus 129 -----NPvD~---~t~~-----------~~k~sg~~p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~s~ 189 (322)
T cd01338 129 -----NPCNT---NALI-----------AMKNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSPTQ 189 (322)
T ss_pred -----CcHHH---HHHH-----------HHHHcCCCChHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcccE
Confidence 12222 1110 001111122 4699999999999988877 8999999999999997643
Q ss_pred chhHhhh
Q psy11859 448 VPGWVDS 454 (851)
Q Consensus 448 ~p~~i~~ 454 (851)
+|.|...
T Consensus 190 vp~~S~~ 196 (322)
T cd01338 190 YPDFTNA 196 (322)
T ss_pred EEehhhc
Confidence 7777765
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG3019|consensus | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.5e-05 Score=75.59 Aligned_cols=223 Identities=15% Similarity=0.077 Sum_probs=133.3
Q ss_pred CCEEEEecCccHHHHHHHHHHHH-----hCC-CccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEE
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLR-----SCP-DIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIE 291 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~-----~g~-~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~ 291 (851)
++..++-|++|||+..|-...-+ .+| +=+.|.++.|.+... ++++-+
T Consensus 12 sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~~---------------------------ritw~e 64 (315)
T KOG3019|consen 12 SRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGKA---------------------------RITWPE 64 (315)
T ss_pred cccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCCc---------------------------ccccch
Confidence 34567779999999887663321 110 115788888876542 333333
Q ss_pred cCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcc--hhHHHHHHHHH-----HHHHHHHHHHHhcCCce-EEEEeeeee
Q psy11859 292 GDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLE--AELKENVAANT-----RGTQRLLDIALKMKKLV-AFIHFSTAF 363 (851)
Q Consensus 292 gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~--~~~~~~~~~Nv-----~Gt~~ll~~a~~~~~~~-~fV~vSTa~ 363 (851)
-|.. ||. -.++.++++++....+ ..+..-++-|| ..|..|+++...++... .+|.+|...
T Consensus 65 l~~~----Gip--------~sc~a~vna~g~n~l~P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva 132 (315)
T KOG3019|consen 65 LDFP----GIP--------ISCVAGVNAVGNNALLPIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVA 132 (315)
T ss_pred hcCC----CCc--------eehHHHHhhhhhhccCchhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeE
Confidence 2322 111 1355555555543221 23334444444 45778889888887544 799999887
Q ss_pred eeCCC--cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEeccccc
Q psy11859 364 CHPDQ--KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVL 441 (851)
Q Consensus 364 ~~~~~--~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~ 441 (851)
+|-+. ..++|+......+. +..-=..-|.......++..++++|.|.|.
T Consensus 133 ~y~pS~s~eY~e~~~~qgfd~-----------------------------~srL~l~WE~aA~~~~~~~r~~~iR~GvVl 183 (315)
T KOG3019|consen 133 VYVPSESQEYSEKIVHQGFDI-----------------------------LSRLCLEWEGAALKANKDVRVALIRIGVVL 183 (315)
T ss_pred EeccccccccccccccCChHH-----------------------------HHHHHHHHHHHhhccCcceeEEEEEEeEEE
Confidence 76553 46777765555544 222112234444444558999999999999
Q ss_pred CCCCCCchhHhhhhcCCceEEEEcccCceeEEEeec---------C-CCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 442 PSFQEPVPGWVDSLNGPVGVLVASGKGVVRSMILND---------L-STETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 442 G~~~~p~p~~i~~~~~~~~~~~~~g~~v~~~~~~~~---------~-~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
|-++..+..++--+.-+.+--+|.|......++.++ + +...+|.|-+.+ ++++..|+.+.+...+++
T Consensus 184 G~gGGa~~~M~lpF~~g~GGPlGsG~Q~fpWIHv~DL~~li~~ale~~~v~GViNgvAP--~~~~n~Ef~q~lg~aL~R 260 (315)
T KOG3019|consen 184 GKGGGALAMMILPFQMGAGGPLGSGQQWFPWIHVDDLVNLIYEALENPSVKGVINGVAP--NPVRNGEFCQQLGSALSR 260 (315)
T ss_pred ecCCcchhhhhhhhhhccCCcCCCCCeeeeeeehHHHHHHHHHHHhcCCCCceecccCC--CccchHHHHHHHHHHhCC
Confidence 998776554444333332223344544444444332 2 345678898888 899999999999998775
|
|
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=97.88 E-value=5e-05 Score=79.35 Aligned_cols=106 Identities=17% Similarity=0.157 Sum_probs=63.6
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
+++.+-+++=-.+|||||++|++.|+++| .+|.++.|..... +....++.++..+
T Consensus 12 e~iD~VR~itN~SSG~iG~aLA~~L~~~G---~~V~li~r~~~~~----------------------~~~~~~v~~i~v~ 66 (229)
T PRK06732 12 EPIDSVRGITNHSTGQLGKIIAETFLAAG---HEVTLVTTKTAVK----------------------PEPHPNLSIIEIE 66 (229)
T ss_pred cccCCceeecCccchHHHHHHHHHHHhCC---CEEEEEECccccc----------------------CCCCCCeEEEEEe
Confidence 33333333333689999999999999998 6888888753210 0011255666543
Q ss_pred CCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHh
Q psy11859 294 ILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALK 349 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~ 349 (851)
-.+.. .+.+...+.++|+|||+||...+.. ....-..+...+.++.+++++
T Consensus 67 s~~~m----~~~l~~~~~~~DivIh~AAvsd~~~-~~~~~~~~~~~~~~v~~~~~~ 117 (229)
T PRK06732 67 NVDDL----LETLEPLVKDHDVLIHSMAVSDYTP-VYMTDLEEVSASDNLNEFLTK 117 (229)
T ss_pred cHHHH----HHHHHHHhcCCCEEEeCCccCCcee-hhhhhhhhhhhhhhhhhhhcc
Confidence 32211 1234455678999999999876532 122223455666677777754
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00017 Score=79.00 Aligned_cols=117 Identities=20% Similarity=0.137 Sum_probs=80.5
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|+|.||||.+|++++..|+...+....|.+++|.... ... .+ ++. +. +....+.| .+.+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~-~g~-al-Dl~-------------~~-~~~~~i~~--~~~~ 61 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT-PGV-AV-DLS-------------HI-PTAVKIKG--FSGE 61 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC-cce-eh-hhh-------------cC-CCCceEEE--eCCC
Confidence 689999999999999999886544445678888886432 100 00 100 00 11122333 1111
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
++...++++|+||-+|+..+-. .+..+.+..|+..+++++++..+.+ .+++|.++|
T Consensus 62 ------d~~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivivvs 118 (312)
T PRK05086 62 ------DPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIGIIT 118 (312)
T ss_pred ------CHHHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcc
Confidence 4445568899999999986543 4556889999999999999999985 899999988
|
|
| >KOG1204|consensus | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.9e-05 Score=76.51 Aligned_cols=165 Identities=20% Similarity=0.197 Sum_probs=100.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
..++.||||||+-=||.-++..++..+.+. .++...|..... +.|+-..+ +.-....||++
T Consensus 4 ~~r~villTGaSrgiG~~~v~~i~aed~e~-~r~g~~r~~a~~---------------~~L~v~~g---d~~v~~~g~~~ 64 (253)
T KOG1204|consen 4 NMRKVILLTGASRGIGTGSVATILAEDDEA-LRYGVARLLAEL---------------EGLKVAYG---DDFVHVVGDIT 64 (253)
T ss_pred ccceEEEEecCCCCccHHHHHHHHhcchHH-HHHhhhcccccc---------------cceEEEec---CCcceechHHH
Confidence 356789999999999999999998876331 222222222110 00000000 11222344554
Q ss_pred CCcCCCCHHHHHHHhc----CccEEEEccccCCc----------chhHHHHHHHHHHHHHHHHHHHHhc-CC---ceEEE
Q psy11859 296 QANLGIKDSDLLMLQE----EVSVVFNGAASLKL----------EAELKENVAANTRGTQRLLDIALKM-KK---LVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~----~vd~ViH~AA~~~~----------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~---~~~fV 357 (851)
+..+ -.++.++.. +-|+|||.||.... ...++.+++.|+.+...|...+... ++ .+..|
T Consensus 65 e~~~---l~al~e~~r~k~gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vV 141 (253)
T KOG1204|consen 65 EEQL---LGALREAPRKKGGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVV 141 (253)
T ss_pred HHHH---HHHHHhhhhhcCCceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEE
Confidence 4320 011111111 46999999997532 1357789999999999988877542 22 36789
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----CCCEE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----KLPVV 433 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----~l~~~ 433 (851)
++||..+ ..|.+. -..|+.+|++-+++.+..+. ++.++
T Consensus 142 nvSS~aa------------v~p~~~--------------------------wa~yc~~KaAr~m~f~~lA~EEp~~v~vl 183 (253)
T KOG1204|consen 142 NVSSLAA------------VRPFSS--------------------------WAAYCSSKAARNMYFMVLASEEPFDVRVL 183 (253)
T ss_pred Eecchhh------------hccccH--------------------------HHHhhhhHHHHHHHHHHHhhcCccceeEE
Confidence 9999433 233332 13499999999999987754 66788
Q ss_pred EEecccc
Q psy11859 434 IVRPSIV 440 (851)
Q Consensus 434 ivRp~~V 440 (851)
.++||.|
T Consensus 184 ~~aPGvv 190 (253)
T KOG1204|consen 184 NYAPGVV 190 (253)
T ss_pred EccCCcc
Confidence 8888765
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00055 Score=75.25 Aligned_cols=114 Identities=17% Similarity=0.081 Sum_probs=75.7
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCcc-----EEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIG-----KVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~-----~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
+|.||||+|.||+.++..|+..+ -+. .+.++++.+.. ++.+....|+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~-~~~~~~~~~l~L~Di~~~~---------------------------~~~~g~~~Dl 53 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGE-LFGDDQPVILHLLDIPPAM---------------------------KALEGVVMEL 53 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCC-ccCCCCceEEEEEecCCcc---------------------------Cccceeeeeh
Confidence 69999999999999999888653 223 48888886521 0222334444
Q ss_pred CCCcCCCCH-----HHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 295 LQANLGIKD-----SDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 295 ~~~~lgls~-----~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
.|....+.. ......++++|+|||+||..+-+ ++-.+.+..|+.-.+++.....+..+...++.+-|
T Consensus 54 ~d~~~~~~~~~~i~~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 54 QDCAFPLLKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred hhhcccccCCcEEecChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 443200000 12346678999999999986543 45668899999999999998888732344444433
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PHA00616 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.61 E-value=2.4e-05 Score=57.88 Aligned_cols=33 Identities=18% Similarity=0.405 Sum_probs=22.1
Q ss_pred cccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 719 TFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 719 ~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
||+| +.||+.|.+.++|..|++.|+|++|+.|+
T Consensus 1 pYqC--~~CG~~F~~~s~l~~H~r~~hg~~~~~~~ 33 (44)
T PHA00616 1 MYQC--LRCGGIFRKKKEVIEHLLSVHKQNKLTLE 33 (44)
T ss_pred CCcc--chhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence 4666 66666666666666666666666666664
|
|
| >KOG1014|consensus | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00049 Score=72.99 Aligned_cols=167 Identities=21% Similarity=0.267 Sum_probs=105.9
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHH-HHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLA-EFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~-~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+-..|||||.=||+..+++|.++| -+|+++.|.... .++++ ++. +. ..-.+.++..|.+++
T Consensus 50 ~WAVVTGaTDGIGKayA~eLAkrG---~nvvLIsRt~~K---L~~v~kEI~---------~~---~~vev~~i~~Dft~~ 111 (312)
T KOG1014|consen 50 SWAVVTGATDGIGKAYARELAKRG---FNVVLISRTQEK---LEAVAKEIE---------EK---YKVEVRIIAIDFTKG 111 (312)
T ss_pred CEEEEECCCCcchHHHHHHHHHcC---CEEEEEeCCHHH---HHHHHHHHH---------HH---hCcEEEEEEEecCCC
Confidence 678999999999999999999999 789999998653 22222 111 11 113588899999998
Q ss_pred cCCCCHHHHHHHhc--CccEEEEccccCC-cch--------hHHHHHHHHHHHHHHHHHHHHh-c--CCceEEEEeeeee
Q psy11859 298 NLGIKDSDLLMLQE--EVSVVFNGAASLK-LEA--------ELKENVAANTRGTQRLLDIALK-M--KKLVAFIHFSTAF 363 (851)
Q Consensus 298 ~lgls~~~~~~~~~--~vd~ViH~AA~~~-~~~--------~~~~~~~~Nv~Gt~~ll~~a~~-~--~~~~~fV~vSTa~ 363 (851)
+- .-+.+...+. ++.++|++++... .++ ..++.+.+|+.++..+.+...- | ++--.+|.+||..
T Consensus 112 ~~--~ye~i~~~l~~~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~a 189 (312)
T KOG1014|consen 112 DE--VYEKLLEKLAGLDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFA 189 (312)
T ss_pred ch--hHHHHHHHhcCCceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEecccc
Confidence 71 1112333333 4678999999765 121 2345578899997777665532 1 1234688888853
Q ss_pred eeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHH----HHhC-CCCEEEEecc
Q psy11859 364 CHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVD----EYKT-KLPVVIVRPS 438 (851)
Q Consensus 364 ~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~----~~~~-~l~~~ivRp~ 438 (851)
+-- +.|. -..|+.||+.-+.+-. ++.. ++.+-.+=|.
T Consensus 190 g~~----------p~p~----------------------------~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~ 231 (312)
T KOG1014|consen 190 GLI----------PTPL----------------------------LSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPY 231 (312)
T ss_pred ccc----------cChh----------------------------HHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehh
Confidence 311 1121 1349999996655443 3332 6766666666
Q ss_pred cccCC
Q psy11859 439 IVLPS 443 (851)
Q Consensus 439 ~V~G~ 443 (851)
.|.++
T Consensus 232 ~VaTk 236 (312)
T KOG1014|consen 232 LVATK 236 (312)
T ss_pred heecc
Confidence 65544
|
|
| >PHA00616 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.51 E-value=3.1e-05 Score=57.28 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=32.1
Q ss_pred ccccCccccCccccCchhHHHhhhhcCCCCCccCCC
Q psy11859 749 SFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTL 784 (851)
Q Consensus 749 p~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~ 784 (851)
||+|+ .||+.|..+++|.+|++.|+|++|+.|+.
T Consensus 1 pYqC~--~CG~~F~~~s~l~~H~r~~hg~~~~~~~~ 34 (44)
T PHA00616 1 MYQCL--RCGGIFRKKKEVIEHLLSVHKQNKLTLEY 34 (44)
T ss_pred CCccc--hhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence 68998 99999999999999999999999999875
|
|
| >KOG1478|consensus | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0013 Score=67.23 Aligned_cols=185 Identities=17% Similarity=0.219 Sum_probs=111.5
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCC--ccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPD--IGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~--v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
-|.+||||++.-||-.||.+||+...+ +-.|.+..|.-+. +++ +-.+|++-.|+..-+++++..|++
T Consensus 3 RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~k--ae~---------vc~~lk~f~p~~~i~~~yvlvD~s 71 (341)
T KOG1478|consen 3 RKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSK--AEA---------VCAALKAFHPKSTIEVTYVLVDVS 71 (341)
T ss_pred ceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhH--HHH---------HHHHHHHhCCCceeEEEEEEEehh
Confidence 478999999999999999999987533 2345555665433 222 223455566766668999999999
Q ss_pred CCcCCCC-HHHHHHHhcCccEEEEccccCCcc----------------------------------hhHHHHHHHHHHHH
Q psy11859 296 QANLGIK-DSDLLMLQEEVSVVFNGAASLKLE----------------------------------AELKENVAANTRGT 340 (851)
Q Consensus 296 ~~~lgls-~~~~~~~~~~vd~ViH~AA~~~~~----------------------------------~~~~~~~~~Nv~Gt 340 (851)
+..--+. ..++..-++..|.|+-.||...++ +++.+.+++||.|-
T Consensus 72 Nm~Sv~~A~~di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGh 151 (341)
T KOG1478|consen 72 NMQSVFRASKDIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGH 151 (341)
T ss_pred hHHHHHHHHHHHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccch
Confidence 7650000 002223345789999999865332 12345689999998
Q ss_pred HHHHHHHHh---cCCceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHH
Q psy11859 341 QRLLDIALK---MKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKR 417 (851)
Q Consensus 341 ~~ll~~a~~---~~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~ 417 (851)
.-+++-... .+.-..+|.+||..+-.. ..+.+ .++.. -+ --+|.-||+
T Consensus 152 fyli~~l~pll~~~~~~~lvwtSS~~a~kk-----------~lsle------------D~q~~----kg--~~pY~sSKr 202 (341)
T KOG1478|consen 152 FYLIRELEPLLCHSDNPQLVWTSSRMARKK-----------NLSLE------------DFQHS----KG--KEPYSSSKR 202 (341)
T ss_pred hhhHhhhhhHhhcCCCCeEEEEeecccccc-----------cCCHH------------HHhhh----cC--CCCcchhHH
Confidence 766554322 122348999999543211 11111 11100 00 124999999
Q ss_pred HHHHHHHHHhC-----CCCEEEEecccccC
Q psy11859 418 LTETLVDEYKT-----KLPVVIVRPSIVLP 442 (851)
Q Consensus 418 ~aE~~v~~~~~-----~l~~~ivRp~~V~G 442 (851)
+.+.+-.+..+ |+.--++-||+-..
T Consensus 203 l~DlLh~A~~~~~~~~g~~qyvv~pg~~tt 232 (341)
T KOG1478|consen 203 LTDLLHVALNRNFKPLGINQYVVQPGIFTT 232 (341)
T ss_pred HHHHHHHHHhccccccchhhhcccCceeec
Confidence 99987655444 45556667776554
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00082 Score=73.88 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=76.6
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCcc-----EEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIG-----KVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~-----~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
+|.||||+|.||+.++..|+..+- +. .++++++.+... +.+.+..|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~-~~~~~e~el~LiD~~~~~~---------------------------~a~g~~~Dl 52 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRM-LGKDQPIILHLLDIPPAMK---------------------------VLEGVVMEL 52 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccc-cCCCCccEEEEEecCCccc---------------------------ccceeEeeh
Confidence 589999999999999999886431 11 588888865421 222344455
Q ss_pred CCCcCCC-C----HHHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 295 LQANLGI-K----DSDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 295 ~~~~lgl-s----~~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
.|....+ + ..+....++++|+|||+|+...-. ++..+.+..|+.-.+.+.....++.+...++.+-|
T Consensus 53 ~d~~~~~~~~~~~~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs 125 (324)
T TIGR01758 53 MDCAFPLLDGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG 125 (324)
T ss_pred hcccchhcCceeccCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 5443111 0 002245678999999999986553 44678899999999999999988732445554444
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00094 Score=74.21 Aligned_cols=91 Identities=27% Similarity=0.388 Sum_probs=72.1
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||.|| |+||+.++.+|++++. .+|++.+|+.... .++.+ ...++++++..|+.|.+
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d--~~V~iAdRs~~~~---~~i~~---------------~~~~~v~~~~vD~~d~~ 60 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGD--GEVTIADRSKEKC---ARIAE---------------LIGGKVEALQVDAADVD 60 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCC--ceEEEEeCCHHHH---HHHHh---------------hccccceeEEecccChH
Confidence 68999999 9999999999999874 7999999986432 22211 11238999999999987
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcC
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMK 351 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~ 351 (851)
.+..++++.|+||++|-... +.+++++|.+++
T Consensus 61 ------al~~li~~~d~VIn~~p~~~---------------~~~i~ka~i~~g 92 (389)
T COG1748 61 ------ALVALIKDFDLVINAAPPFV---------------DLTILKACIKTG 92 (389)
T ss_pred ------HHHHHHhcCCEEEEeCCchh---------------hHHHHHHHHHhC
Confidence 88899999999999996421 136889999987
|
|
| >KOG1199|consensus | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00015 Score=69.51 Aligned_cols=106 Identities=19% Similarity=0.222 Sum_probs=79.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
.+|-..|||||..=+|+...|.|.++| ..|.+++-+.++-. +.-++ .-.++.+.+.|++
T Consensus 7 ~kglvalvtggasglg~ataerlakqg---asv~lldlp~skg~--~vake----------------lg~~~vf~padvt 65 (260)
T KOG1199|consen 7 TKGLVALVTGGASGLGKATAERLAKQG---ASVALLDLPQSKGA--DVAKE----------------LGGKVVFTPADVT 65 (260)
T ss_pred hcCeeEEeecCcccccHHHHHHHHhcC---ceEEEEeCCcccch--HHHHH----------------hCCceEEeccccC
Confidence 467788999999999999999999998 78888888765421 11111 2348999999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCC------c-------chhHHHHHHHHHHHHHHHHHHHH
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLK------L-------EAELKENVAANTRGTQRLLDIAL 348 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~------~-------~~~~~~~~~~Nv~Gt~~ll~~a~ 348 (851)
... +....+ .+.|+.++||+..- + -++.+..+++|+.||.|++++..
T Consensus 66 sek------dv~aala~ak~kfgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~a 132 (260)
T KOG1199|consen 66 SEK------DVRAALAKAKAKFGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGA 132 (260)
T ss_pred cHH------HHHHHHHHHHhhccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehh
Confidence 654 655543 36899999998531 1 13455678999999999988764
|
|
| >KOG3993|consensus | Back alignment and domain information |
|---|
Probab=97.42 E-value=3.5e-05 Score=82.94 Aligned_cols=81 Identities=23% Similarity=0.410 Sum_probs=66.8
Q ss_pred ceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcC--------C---------------
Q psy11859 691 IFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSG--------E--------------- 747 (851)
Q Consensus 691 ~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~g--------e--------------- 747 (851)
.|.|..|.-.|...-.|-+|+-.-.---.|+| ++|+|.|+...+|-.|+|+|.. .
T Consensus 267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrC--PEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~e 344 (500)
T KOG3993|consen 267 DYICQLCKEKYEDAFALAQHRCPRIVHVEYRC--PECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQE 344 (500)
T ss_pred HHHHHHHHHhhhhHHHHhhccCCeeEEeeecC--CcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhh
Confidence 47899999999988899999654333345999 9999999999999999999841 1
Q ss_pred ----------CccccCccccCccccCchhHHHhhhhcC
Q psy11859 748 ----------RSFKCDWQDCKWQFSRSDELSRHRRSHF 775 (851)
Q Consensus 748 ----------kp~~C~~~~C~k~F~~~~~L~~H~r~H~ 775 (851)
.-|.|. .|+|.|.+..-|+.|+.+|.
T Consensus 345 a~rsg~dss~gi~~C~--~C~KkFrRqAYLrKHqlthq 380 (500)
T KOG3993|consen 345 AERSGDDSSSGIFSCH--TCGKKFRRQAYLRKHQLTHQ 380 (500)
T ss_pred ccccCCcccCceeecH--HhhhhhHHHHHHHHhHHhhh
Confidence 138897 89999999999999988875
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0038 Score=69.21 Aligned_cols=92 Identities=17% Similarity=0.184 Sum_probs=55.9
Q ss_pred CCCEEEEecCccHHHHH--HHHHHHHhCCCccEEEEEecCCCCCCHHHHHH--HHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 217 AGRSVLVTGGTGFMGKV--LLEKLLRSCPDIGKVYILCRAKRGLTPKARLA--EFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~--Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~--~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
.+|++|||||++-+|.. +++.| +.| ..|.++.+...... .+.. -..+...+..+.++ ....+..+.+
T Consensus 40 ggK~aLVTGaSsGIGlA~~IA~al-~~G---A~Vi~v~~~~~~~~--~~~~tagwy~~~a~~~~a~~---~G~~a~~i~~ 110 (398)
T PRK13656 40 GPKKVLVIGASSGYGLASRIAAAF-GAG---ADTLGVFFEKPGTE--KKTGTAGWYNSAAFDKFAKA---AGLYAKSING 110 (398)
T ss_pred CCCEEEEECCCchHhHHHHHHHHH-HcC---CeEEEEecCcchhh--hcccccccchHHHHHHHHHh---cCCceEEEEc
Confidence 47899999999999999 89999 888 66777765321110 0000 00000011111111 1124678899
Q ss_pred CCCCCcCCCCHHHHHHHh-------cCccEEEEccccC
Q psy11859 293 DILQANLGIKDSDLLMLQ-------EEVSVVFNGAASL 323 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~ 323 (851)
|+++++ +...++ .++|+|+|+||..
T Consensus 111 DVss~E------~v~~lie~I~e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 111 DAFSDE------IKQKVIELIKQDLGQVDLVVYSLASP 142 (398)
T ss_pred CCCCHH------HHHHHHHHHHHhcCCCCEEEECCccC
Confidence 999876 444332 3689999999976
|
|
| >PHA00732 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00013 Score=62.27 Aligned_cols=46 Identities=35% Similarity=0.609 Sum_probs=22.3
Q ss_pred cccccCCccCccccChhhHHHHHhh-hcCCCccccCccccCccccCchhHHHhhhhc
Q psy11859 719 TFQCTYPECLKFYAKMSHLKAHLRR-HSGERSFKCDWQDCKWQFSRSDELSRHRRSH 774 (851)
Q Consensus 719 ~~~C~~~~Cgk~F~~~~~L~~H~~~-H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H 774 (851)
||+| +.||+.|.+.++|..|++. |+ ++.|+ .|++.|. .+..|.+++
T Consensus 1 py~C--~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~--~CgKsF~---~l~~H~~~~ 47 (79)
T PHA00732 1 MFKC--PICGFTTVTLFALKQHARRNHT---LTKCP--VCNKSYR---RLNQHFYSQ 47 (79)
T ss_pred CccC--CCCCCccCCHHHHHHHhhcccC---CCccC--CCCCEeC---Chhhhhccc
Confidence 3455 4555555555555555542 33 23454 5555554 244454433
|
|
| >PRK10124 putative UDP-glucose lipid carrier transferase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=2e-05 Score=91.05 Aligned_cols=96 Identities=6% Similarity=-0.030 Sum_probs=81.1
Q ss_pred HHHHhhhhcccceeEEecCCCCCCCCcccccccccccccceecCC-CCCccccccccccc--chhhhhhhhhhHHHHHHh
Q psy11859 81 EELALLGVTESNVYLIDIDGNGRFPPARVKCEFQEDSTKTIVEHN-LPDQTDVRGIHETD--FKFTIKYREFTQEMLSEL 157 (851)
Q Consensus 81 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ddd~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 157 (851)
+++++|+|+ +|..+++++..++...++|+||+|||... ++.+. .|+..++.+.++++ ++++||+|+.+.+++++|
T Consensus 145 rVLIvGaG~-~g~~l~~~L~~~~~~g~~vVGfiDdd~~~-g~~VpvlG~~~dL~~~v~~~~IdeViIAip~~~~~~l~el 222 (463)
T PRK10124 145 MVAVAGDLP-AGQMLLESFRNEPWLGFEVVGVYHDPKPG-GVSNDWAGNLQQLVEDAKAGKIHNVYIAMSMCDGARVKKL 222 (463)
T ss_pred cEEEEECCH-HHHHHHHHHhcCccCCeEEEEEEeCCccc-cCCCCcCCCHHHHHHHHHhCCCCEEEEeCCCcchHHHHHH
Confidence 489999999 99999999999999899999999998632 22111 56777888888776 599999999999999999
Q ss_pred hhhhhhhhhhhcccccCCCCC
Q psy11859 158 ISHSLYCRQRIKYECHQAPLD 178 (851)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~ 178 (851)
++.|...++.++..|+..+..
T Consensus 223 l~~~~~~~v~V~ivP~l~~~~ 243 (463)
T PRK10124 223 VRQLADTTCSVLLIPDVFTFN 243 (463)
T ss_pred HHHHHHcCCeEEEecchhhcc
Confidence 999999999999999876554
|
|
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0007 Score=76.37 Aligned_cols=76 Identities=24% Similarity=0.305 Sum_probs=56.1
Q ss_pred cCCCEEEEecC----------------ccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhh
Q psy11859 216 YAGRSVLVTGG----------------TGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKE 279 (851)
Q Consensus 216 ~~~k~VlVTGa----------------tGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~ 279 (851)
++|++|||||| +|.+|..+++.|.+.| .+|+++.++....
T Consensus 186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~G---a~V~~v~~~~~~~--------------------- 241 (399)
T PRK05579 186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRG---ADVTLVSGPVNLP--------------------- 241 (399)
T ss_pred cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCC---CEEEEeCCCcccc---------------------
Confidence 68999999999 9999999999999999 7888887764210
Q ss_pred CcccCCCeEEEEcCCCCCcCCCCHHHHHHHh----cCccEEEEccccCCcc
Q psy11859 280 CPAQLSRLHIIEGDILQANLGIKDSDLLMLQ----EEVSVVFNGAASLKLE 326 (851)
Q Consensus 280 ~~~~~~~v~~v~gDi~~~~lgls~~~~~~~~----~~vd~ViH~AA~~~~~ 326 (851)
.| ..+ ...|+++.+ ++...+ .++|++||+||..++.
T Consensus 242 ~~---~~~--~~~dv~~~~------~~~~~v~~~~~~~DilI~~Aav~d~~ 281 (399)
T PRK05579 242 TP---AGV--KRIDVESAQ------EMLDAVLAALPQADIFIMAAAVADYR 281 (399)
T ss_pred CC---CCc--EEEccCCHH------HHHHHHHHhcCCCCEEEEcccccccc
Confidence 00 122 345787654 444433 4689999999987654
|
|
| >PHA00732 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00028 Score=60.28 Aligned_cols=47 Identities=19% Similarity=0.367 Sum_probs=27.5
Q ss_pred ceeecCCccccchhhhhhhccc-ccCCcccccccCCccCccccChhhHHHHHhhhc
Q psy11859 691 IFTQILPAYLVDFIMVLIRQKT-FENLVRTFQCTYPECLKFYAKMSHLKAHLRRHS 745 (851)
Q Consensus 691 ~~~c~~c~~~~~~~~~l~~h~~-~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~ 745 (851)
||.|..|++.|.+...|..|++ .|+ ++.| +.||++|. .+..|.+++.
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C--~~CgKsF~---~l~~H~~~~~ 48 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHT---LTKC--PVCNKSYR---RLNQHFYSQY 48 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccC---CCcc--CCCCCEeC---ChhhhhcccC
Confidence 4566666666666666666665 344 2456 56666665 3556655443
|
|
| >TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase | Back alignment and domain information |
|---|
Probab=97.17 E-value=3.3e-05 Score=89.32 Aligned_cols=100 Identities=11% Similarity=-0.080 Sum_probs=84.5
Q ss_pred HHHHHhhhhcccceeEEecCCCCCCCCcccccccccccccc-eecCC--CCCccccccccccc--chhhhhhhhhhHHHH
Q psy11859 80 CEELALLGVTESNVYLIDIDGNGRFPPARVKCEFQEDSTKT-IVEHN--LPDQTDVRGIHETD--FKFTIKYREFTQEML 154 (851)
Q Consensus 80 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ddd~~~~-~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 154 (851)
-+++++|+|+ +|..+++++..++...++++|++|||..+. .+.+- +|+..++.+.++++ ++++|++|+.+.+++
T Consensus 126 ~rvLIvGag~-~a~~l~~~L~~~~~~g~~vvG~idd~~~~~~~i~g~pVlg~~~~l~~~i~~~~id~ViIa~p~~~~~~~ 204 (445)
T TIGR03025 126 RRVLIVGTGE-AARELAAALSRNPDLGYRVVGFVDDRPSDRVEVAGLPVLGKLDDLVELVRAHRVDEVIIALPLSEEARI 204 (445)
T ss_pred CcEEEEECCH-HHHHHHHHHhhCccCCeEEEEEEeCCcccccccCCCcccCCHHHHHHHHHhCCCCEEEEecCcccHHHH
Confidence 3589999999 999999999999999999999999987764 11111 67778888888776 599999999999999
Q ss_pred HHhhhhhhhhhhhhcccccCCCCCCC
Q psy11859 155 SELISHSLYCRQRIKYECHQAPLDLH 180 (851)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (851)
+++++.|...+++++..|+..+...+
T Consensus 205 ~~ll~~~~~~gv~V~~vP~~~e~~~~ 230 (445)
T TIGR03025 205 LELLLQLRDLGVDVRLVPDLFEFLLG 230 (445)
T ss_pred HHHHHHHHhcCCEEEEeCchhhhccC
Confidence 99999999999999999988876544
|
Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. |
| >KOG3993|consensus | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00014 Score=78.33 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=39.5
Q ss_pred ceeecCCccccchhhhhhhcccccC--------Ccc-------------------------cccccCCccCccccChhhH
Q psy11859 691 IFTQILPAYLVDFIMVLIRQKTFEN--------LVR-------------------------TFQCTYPECLKFYAKMSHL 737 (851)
Q Consensus 691 ~~~c~~c~~~~~~~~~l~~h~~~h~--------~~r-------------------------~~~C~~~~Cgk~F~~~~~L 737 (851)
-|.|..|+|.|+-..+|-.|.+=|. +.. -|.| +.|+|.|.+...|
T Consensus 295 EYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C--~~C~KkFrRqAYL 372 (500)
T KOG3993|consen 295 EYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSC--HTCGKKFRRQAYL 372 (500)
T ss_pred eecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeec--HHhhhhhHHHHHH
Confidence 3667777777777777777766653 111 2788 7899999999999
Q ss_pred HHHHhhhcC
Q psy11859 738 KAHLRRHSG 746 (851)
Q Consensus 738 ~~H~~~H~g 746 (851)
+.|+.+|..
T Consensus 373 rKHqlthq~ 381 (500)
T KOG3993|consen 373 RKHQLTHQR 381 (500)
T ss_pred HHhHHhhhc
Confidence 999888753
|
|
| >TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase | Back alignment and domain information |
|---|
Probab=97.14 E-value=3.8e-05 Score=88.97 Aligned_cols=99 Identities=11% Similarity=-0.029 Sum_probs=84.5
Q ss_pred HHHHhhhhcccceeEEecCCCCCCCCcccccccccccccceecCC---CCCccccccccccc--chhhhhhhhhhHHHHH
Q psy11859 81 EELALLGVTESNVYLIDIDGNGRFPPARVKCEFQEDSTKTIVEHN---LPDQTDVRGIHETD--FKFTIKYREFTQEMLS 155 (851)
Q Consensus 81 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ddd~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 155 (851)
+++++|+|+ +|..+++++..++...++++|++|||..+.+-..+ .|+..++.+.++++ ++++|++|+.+.++++
T Consensus 130 rvLIiGag~-~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~~gvpVlg~~~dl~~~i~~~~vd~ViIA~p~~~~~~~~ 208 (451)
T TIGR03023 130 RVLIVGAGE-LGRRLAERLARNPELGYRVVGFFDDRPDARTGVRGVPVLGKLDDLEELIREGEVDEVYIALPLAAEDRIL 208 (451)
T ss_pred cEEEEeCCH-HHHHHHHHHHhCccCCcEEEEEEeCCCccccccCCCCccCCHHHHHHHHHhcCCCEEEEeeCcccHHHHH
Confidence 589999999 99999999988888899999999999877543222 67778888888776 5999999999999999
Q ss_pred HhhhhhhhhhhhhcccccCCCCCCC
Q psy11859 156 ELISHSLYCRQRIKYECHQAPLDLH 180 (851)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (851)
++++.|...+++++..|+..+....
T Consensus 209 ~ll~~~~~~gv~V~vvP~~~e~~~~ 233 (451)
T TIGR03023 209 ELLDALEDLTVDVRLVPDLFDFALL 233 (451)
T ss_pred HHHHHHHhcCCEEEEeCchhhhccC
Confidence 9999999999999999988776543
|
Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0014 Score=74.45 Aligned_cols=91 Identities=20% Similarity=0.310 Sum_probs=64.3
Q ss_pred EEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcCC
Q psy11859 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLG 300 (851)
Q Consensus 221 VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lg 300 (851)
|+|-|| |++|+.+++.|++..+ ..+|.+.+|+.. +++++.+ .. ...++.++..|+.|++
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~-~~~v~va~r~~~------~~~~~~~---------~~--~~~~~~~~~~d~~~~~-- 59 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGP-FEEVTVADRNPE------KAERLAE---------KL--LGDRVEAVQVDVNDPE-- 59 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTC-E-EEEEEESSHH------HHHHHHT-------------TTTTEEEEE--TTTHH--
T ss_pred CEEEcC-cHHHHHHHHHHhcCCC-CCcEEEEECCHH------HHHHHHh---------hc--cccceeEEEEecCCHH--
Confidence 789999 9999999999999863 348999999753 2222211 00 2358999999999886
Q ss_pred CCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcC
Q psy11859 301 IKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMK 351 (851)
Q Consensus 301 ls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~ 351 (851)
++..++++.|+|||+|+.. + ...++++|.+.+
T Consensus 60 ----~l~~~~~~~dvVin~~gp~-~--------------~~~v~~~~i~~g 91 (386)
T PF03435_consen 60 ----SLAELLRGCDVVINCAGPF-F--------------GEPVARACIEAG 91 (386)
T ss_dssp ----HHHHHHTTSSEEEE-SSGG-G--------------HHHHHHHHHHHT
T ss_pred ----HHHHHHhcCCEEEECCccc-h--------------hHHHHHHHHHhC
Confidence 7999999999999999864 1 135788898886
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >KOG2733|consensus | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0008 Score=71.98 Aligned_cols=89 Identities=20% Similarity=0.342 Sum_probs=62.5
Q ss_pred EEEEecCccHHHHHHHHHHHHhC--CCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCc-ccCCCeEEEEcCCCC
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSC--PDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECP-AQLSRLHIIEGDILQ 296 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g--~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~-~~~~~v~~v~gDi~~ 296 (851)
.+.|-||+||-|+.+++.+++.+ ++ ..+-+-.|+.. ++++.+ +.+.+..+ +....+ ++.+|.+|
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~-~slavAGRn~~------KL~~vL-----~~~~~k~~~~ls~~~-i~i~D~~n 73 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEG-LSLAVAGRNEK------KLQEVL-----EKVGEKTGTDLSSSV-ILIADSAN 73 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccC-ceEEEecCCHH------HHHHHH-----HHHhhccCCCcccce-EEEecCCC
Confidence 48899999999999999999832 22 45666666543 232221 12222222 333344 88999999
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcch
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLEA 327 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~ 327 (851)
++ ++.++.+.+.+|+||++.-++-.
T Consensus 74 ~~------Sl~emak~~~vivN~vGPyR~hG 98 (423)
T KOG2733|consen 74 EA------SLDEMAKQARVIVNCVGPYRFHG 98 (423)
T ss_pred HH------HHHHHHhhhEEEEeccccceecC
Confidence 87 99999999999999999887743
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0028 Score=67.09 Aligned_cols=96 Identities=10% Similarity=0.167 Sum_probs=63.8
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||+||||. |+.|++.|++.| ..|++..+...+..... . .....+.++..+.+
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g---~~v~~s~~t~~~~~~~~--------------------~-~g~~~v~~g~l~~~ 55 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG---IEILVTVTTSEGKHLYP--------------------I-HQALTVHTGALDPQ 55 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC---CeEEEEEccCCcccccc--------------------c-cCCceEEECCCCHH
Confidence 58999999999 999999999987 78888888876531110 0 11223444444433
Q ss_pred CCCCHHHHHHHhc--CccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Q psy11859 299 LGIKDSDLLMLQE--EVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIH 358 (851)
Q Consensus 299 lgls~~~~~~~~~--~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~ 358 (851)
++...++ ++|+||+++... -..-+.|+.++|.+.+ +.-+=|
T Consensus 56 ------~l~~~l~~~~i~~VIDAtHPf------------A~~is~~a~~a~~~~~-ipylR~ 98 (256)
T TIGR00715 56 ------ELREFLKRHSIDILVDATHPF------------AAQITTNATAVCKELG-IPYVRF 98 (256)
T ss_pred ------HHHHHHHhcCCCEEEEcCCHH------------HHHHHHHHHHHHHHhC-CcEEEE
Confidence 5655554 699999988542 1134677889998886 544433
|
This enzyme was found to be a monomer by gel filtration. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0024 Score=65.05 Aligned_cols=84 Identities=21% Similarity=0.231 Sum_probs=57.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++|+|+||||.+|+.+++.|++.+ .+|.++.|.. ++..++. +.+... ........|..
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g---~~V~l~~R~~------~~~~~l~-----~~l~~~-----~~~~~~~~~~~ 86 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREG---ARVVLVGRDL------ERAQKAA-----DSLRAR-----FGEGVGAVETS 86 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEcCCH------HHHHHHH-----HHHHhh-----cCCcEEEeeCC
Confidence 578999999999999999999999876 6888888863 2222211 111111 12334556666
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCC
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLK 324 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~ 324 (851)
+.+ ++...+.++|+||++.+...
T Consensus 87 ~~~------~~~~~~~~~diVi~at~~g~ 109 (194)
T cd01078 87 DDA------ARAAAIKGADVVFAAGAAGV 109 (194)
T ss_pred CHH------HHHHHHhcCCEEEECCCCCc
Confidence 554 67778889999999776543
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B | Back alignment and domain information |
|---|
Probab=96.82 E-value=5.7e-05 Score=75.12 Aligned_cols=89 Identities=15% Similarity=0.025 Sum_probs=62.4
Q ss_pred HHhhhhcccceeEEecCCCCCCCCcccccccccccccceecCC----CCCccccccccccc--chhhhhhhhhhHHHHHH
Q psy11859 83 LALLGVTESNVYLIDIDGNGRFPPARVKCEFQEDSTKTIVEHN----LPDQTDVRGIHETD--FKFTIKYREFTQEMLSE 156 (851)
Q Consensus 83 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ddd~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 156 (851)
.++|++. +|..+++.+..++...++++|++|||.....-..+ +|+..++.+.+.++ ++++||+|..+.+++++
T Consensus 81 ~~v~~~~-~~~~~~~~l~~~~~~g~~vvg~~d~~~~~~~~~~~~~~~lg~~~~l~~~~~~~~id~v~ial~~~~~~~i~~ 159 (175)
T PF13727_consen 81 LIVGAGG-AGRELAEALRSNPRLGYRVVGFVDDDPSDRGPEIDGVPVLGDLDDLPELVREHDIDEVIIALPWSEEEQIKR 159 (175)
T ss_dssp EEE--SH-HHHHHHHHHHH--SSSEEEEEEE-S-GGGTT-EETTEEEE--GGGHHHHHHHHT--EEEE--TTS-HHHHHH
T ss_pred EEEEEec-hHHHHHHHHHhhhhcCceEEEEEeCchhhccCcccCceeEcCHHHHHHHHHhCCCCEEEEEcCccCHHHHHH
Confidence 5677767 78888889988899999999999999875433222 78889999988877 59999999999999999
Q ss_pred hhhhhhhhhhhhcccc
Q psy11859 157 LISHSLYCRQRIKYEC 172 (851)
Q Consensus 157 ~~~~~~~~~~~~~~~~ 172 (851)
+++.|.+.+++++..|
T Consensus 160 ii~~~~~~~v~v~~vP 175 (175)
T PF13727_consen 160 IIEELENHGVRVRVVP 175 (175)
T ss_dssp HHHHHHTTT-EEEE--
T ss_pred HHHHHHhCCCEEEEeC
Confidence 9999999999887765
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.004 Score=62.61 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=48.3
Q ss_pred cCCCEEEEecC----------------ccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhh
Q psy11859 216 YAGRSVLVTGG----------------TGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKE 279 (851)
Q Consensus 216 ~~~k~VlVTGa----------------tGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~ 279 (851)
++||+||||+| ||-+|..|++.+++.| ..|.++..+..-.
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~G---a~V~li~g~~~~~--------------------- 56 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRG---AEVTLIHGPSSLP--------------------- 56 (185)
T ss_dssp -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT----EEEEEE-TTS-----------------------
T ss_pred CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCC---CEEEEEecCcccc---------------------
Confidence 36788888875 7999999999999999 6788777764210
Q ss_pred CcccCCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcch
Q psy11859 280 CPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEA 327 (851)
Q Consensus 280 ~~~~~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~ 327 (851)
....+..+..+=.+.- .+.+...+.+.|++||+||..+|..
T Consensus 57 ---~p~~~~~i~v~sa~em----~~~~~~~~~~~Di~I~aAAVsDf~p 97 (185)
T PF04127_consen 57 ---PPPGVKVIRVESAEEM----LEAVKELLPSADIIIMAAAVSDFRP 97 (185)
T ss_dssp -----TTEEEEE-SSHHHH----HHHHHHHGGGGSEEEE-SB--SEEE
T ss_pred ---ccccceEEEecchhhh----hhhhccccCcceeEEEecchhheee
Confidence 1235666665433221 1233344567899999999998854
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.019 Score=55.21 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=78.2
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
++|.|+||+|.+|++++-.|+.. +-+.+|+++++.+.. ......++.... +....++.+..+|..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~-~l~~ei~L~D~~~~~--~~g~a~Dl~~~~---------~~~~~~~~i~~~~~~--- 65 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ-GLADEIVLIDINEDK--AEGEALDLSHAS---------APLPSPVRITSGDYE--- 65 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT-TTSSEEEEEESSHHH--HHHHHHHHHHHH---------HGSTEEEEEEESSGG---
T ss_pred CEEEEECCCChHHHHHHHHHHhC-CCCCceEEeccCccc--ceeeehhhhhhh---------hhccccccccccccc---
Confidence 58999999999999999999987 456889999998542 111122221111 011112333333322
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
.++++|+|+-+|+...- ..+-.+.++.|+.-.+.+.+...+.. ...++.+-|
T Consensus 66 ----------~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvt 118 (141)
T PF00056_consen 66 ----------ALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVT 118 (141)
T ss_dssp ----------GGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-S
T ss_pred ----------ccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeC
Confidence 35789999999997643 34566889999999999999998875 444444444
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.024 Score=63.76 Aligned_cols=186 Identities=17% Similarity=0.212 Sum_probs=102.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCC-CCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKR-GLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~-~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
-+.++|.|-||||++|..|++.|++. |. .+|..+.+... +.. +.+ .. .....+|+
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~h-P~-~el~~l~s~~saG~~----i~~------------~~------~~l~~~~~ 91 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANH-PD-FEITVMTADRKAGQS----FGS------------VF------PHLITQDL 91 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhC-CC-CeEEEEEChhhcCCC----chh------------hC------ccccCccc
Confidence 45679999999999999999998887 65 47777776432 211 000 00 11222444
Q ss_pred CCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccc
Q psy11859 295 LQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEK 374 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~ 374 (851)
.+.. .+ +... ++++|+||=++..- .+.+++..+ +.+ .++|-.|+++-.-+...+ |.
T Consensus 92 ~~~~-~~---~~~~-~~~~DvVf~Alp~~---------------~s~~i~~~~-~~g--~~VIDlSs~fRl~~~~~y-~~ 147 (381)
T PLN02968 92 PNLV-AV---KDAD-FSDVDAVFCCLPHG---------------TTQEIIKAL-PKD--LKIVDLSADFRLRDIAEY-EE 147 (381)
T ss_pred ccee-cC---CHHH-hcCCCEEEEcCCHH---------------HHHHHHHHH-hCC--CEEEEcCchhccCCcccc-hh
Confidence 3221 01 1122 37899999877541 445566654 333 689999998876554322 23
Q ss_pred cCCCCC-CHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCC---CEEEEecccccCCCCCCchh
Q psy11859 375 LYPSPV-SPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKL---PVVIVRPSIVLPSFQEPVPG 450 (851)
Q Consensus 375 ~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l---~~~ivRp~~V~G~~~~p~p~ 450 (851)
.|..|. .|+-.-+.+-.+.|-.-+.+....+-.-||.|+.+=.++=.=+.+.. .+ ++++-=.+.|-|++..+...
T Consensus 148 ~y~~p~~~pe~~~~~~yglpE~~r~~i~~~~iIAnPgC~~t~~~laL~PL~~~~-~i~~~~iiv~a~sgvSGAG~~~~~~ 226 (381)
T PLN02968 148 WYGHPHRAPELQKEAVYGLTELQREEIKSARLVANPGCYPTGIQLPLVPLVKAG-LIEPDNIIIDAKSGVSGAGRGAKEA 226 (381)
T ss_pred ccCCCCCCcccchhhhcccchhCHHHhcCCCEEECCCCHHHHHHHHHHHHHHcC-CCCCceEEEEEeeeccccCcccchh
Confidence 333321 12110011111222222233333344568999988777655554432 22 36666677788888777554
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0058 Score=57.16 Aligned_cols=38 Identities=32% Similarity=0.592 Sum_probs=32.6
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC-CCC
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK-RGL 258 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~-~~~ 258 (851)
+|.|.||||++|+.|++.|++ .|++.-+.++.+.. .+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~-hp~~e~~~~~~~~~~~g~ 39 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAE-HPDFELVALVSSSRSAGK 39 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-TSTEEEEEEEESTTTTTS
T ss_pred CEEEECCCCHHHHHHHHHHhc-CCCccEEEeeeeccccCC
Confidence 689999999999999999998 58888888888877 454
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.011 Score=65.38 Aligned_cols=128 Identities=20% Similarity=0.237 Sum_probs=81.1
Q ss_pred chhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH-----HHHh-----cChhhHHHhhhC
Q psy11859 211 DVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-----AEFS-----KLPVFERLRKEC 280 (851)
Q Consensus 211 ~i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl-----~~~~-----~~~~f~~l~~~~ 280 (851)
+.++-+++++|+|.|++| +|+++++.|.+.| |.+|.++++..-..+-..|- .++. ....-++|++.+
T Consensus 17 ~~Q~~L~~~~VlIiG~Gg-lGs~va~~La~aG--vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in 93 (338)
T PRK12475 17 EGQRKIREKHVLIVGAGA-LGAANAEALVRAG--IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN 93 (338)
T ss_pred HHHHhhcCCcEEEECCCH-HHHHHHHHHHHcC--CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC
Confidence 456678899999999876 9999999999987 47899998875322211121 0000 011123455555
Q ss_pred cccCCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEee
Q psy11859 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFS 360 (851)
Q Consensus 281 ~~~~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vS 360 (851)
|+. +++.+..|++.. .+..+++++|+||-+... +..- ..+-++|.+.+ ..+|+.+
T Consensus 94 p~v--~i~~~~~~~~~~-------~~~~~~~~~DlVid~~D~------~~~r--------~~in~~~~~~~--ip~i~~~ 148 (338)
T PRK12475 94 SEV--EIVPVVTDVTVE-------ELEELVKEVDLIIDATDN------FDTR--------LLINDLSQKYN--IPWIYGG 148 (338)
T ss_pred CCc--EEEEEeccCCHH-------HHHHHhcCCCEEEEcCCC------HHHH--------HHHHHHHHHcC--CCEEEEE
Confidence 554 677888887633 567778999999988732 1111 12346777765 4678887
Q ss_pred eeeeeC
Q psy11859 361 TAFCHP 366 (851)
Q Consensus 361 Ta~~~~ 366 (851)
....+|
T Consensus 149 ~~g~~G 154 (338)
T PRK12475 149 CVGSYG 154 (338)
T ss_pred ecccEE
Confidence 754444
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.015 Score=64.51 Aligned_cols=129 Identities=20% Similarity=0.223 Sum_probs=82.3
Q ss_pred chhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH-----HHHh-----cChhhHHHhhhC
Q psy11859 211 DVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-----AEFS-----KLPVFERLRKEC 280 (851)
Q Consensus 211 ~i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl-----~~~~-----~~~~f~~l~~~~ 280 (851)
+-++-++.++|+|.|+ |.||+.++..|.+.| |.+|.+++...-..+-..|- .++- ....-++|++.+
T Consensus 17 ~~Q~~L~~~~VlVvG~-GglGs~va~~La~aG--vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~in 93 (339)
T PRK07688 17 EGQQKLREKHVLIIGA-GALGTANAEMLVRAG--VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEIN 93 (339)
T ss_pred HHHHHhcCCcEEEECC-CHHHHHHHHHHHHcC--CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHC
Confidence 3456678899999999 889999999999986 57899998864222111111 0110 011223455555
Q ss_pred cccCCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEee
Q psy11859 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFS 360 (851)
Q Consensus 281 ~~~~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vS 360 (851)
|+. +++.+..+++.. ....++++.|+||-+... + ..-..+-++|.+.+ ..+|+.|
T Consensus 94 p~v--~v~~~~~~~~~~-------~~~~~~~~~DlVid~~Dn------~--------~~r~~ln~~~~~~~--iP~i~~~ 148 (339)
T PRK07688 94 SDV--RVEAIVQDVTAE-------ELEELVTGVDLIIDATDN------F--------ETRFIVNDAAQKYG--IPWIYGA 148 (339)
T ss_pred CCc--EEEEEeccCCHH-------HHHHHHcCCCEEEEcCCC------H--------HHHHHHHHHHHHhC--CCEEEEe
Confidence 544 577777787643 556678899999988542 1 11223557787775 5688888
Q ss_pred eeeeeCC
Q psy11859 361 TAFCHPD 367 (851)
Q Consensus 361 Ta~~~~~ 367 (851)
+...+|.
T Consensus 149 ~~g~~G~ 155 (339)
T PRK07688 149 CVGSYGL 155 (339)
T ss_pred eeeeeeE
Confidence 7655553
|
|
| >TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.00025 Score=82.20 Aligned_cols=96 Identities=7% Similarity=-0.097 Sum_probs=78.8
Q ss_pred HHHHhhhhcccceeEEecCCCCCCCCcccccccccccccceecCC----CCCccccccccccc--chhhhhhhhhhHHHH
Q psy11859 81 EELALLGVTESNVYLIDIDGNGRFPPARVKCEFQEDSTKTIVEHN----LPDQTDVRGIHETD--FKFTIKYREFTQEML 154 (851)
Q Consensus 81 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ddd~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 154 (851)
+++++|+|. +|..+++++..++...+.++|++|||..+.+..++ +|+ .++.+.++++ ++++||+|+.+.+++
T Consensus 127 rvlIiGag~-~~~~l~~~l~~~~~~g~~vvGfidd~~~~~~~~i~g~pVlg~-~~l~~~i~~~~id~ViIAip~~~~~~~ 204 (456)
T TIGR03022 127 PAVIIGAGQ-NAAILYRALQSNPQLGLRPLAVVDTDPAASGRLLTGLPVVGA-DDALRLYARTRYAYVIVAMPGTQAEDM 204 (456)
T ss_pred eEEEEeCCH-HHHHHHHHHhhCccCCcEEEEEEeCCccccccccCCCcccCh-hHHHHHHHhCCCCEEEEecCCccHHHH
Confidence 488999999 99999999988888899999999998766543322 455 7777777655 589999999999999
Q ss_pred HHhhhhhhhhhh-hhcccccCCCCC
Q psy11859 155 SELISHSLYCRQ-RIKYECHQAPLD 178 (851)
Q Consensus 155 ~~~~~~~~~~~~-~~~~~~~~~~~~ 178 (851)
+++++.|...++ .++..|+..+..
T Consensus 205 ~~ll~~l~~~~v~~V~~vP~~~e~~ 229 (456)
T TIGR03022 205 ARLVRKLGALHFRNVLIVPSLFGLP 229 (456)
T ss_pred HHHHHHHHhCCCeEEEEeCcccccc
Confidence 999999998888 888888877655
|
This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred. |
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.03 Score=63.75 Aligned_cols=120 Identities=15% Similarity=0.069 Sum_probs=74.5
Q ss_pred CEEEEecCccHHHHHHHHHHHHh---CCC-ccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRS---CPD-IGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~---g~~-v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
-+|+||||+|.||-+|+-.|.+- |++ -..+.+++.+..........-++.+.. | |. ...+.+..+|
T Consensus 124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a-~-------pl-l~~v~i~~~~- 193 (452)
T cd05295 124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLA-F-------PL-LRGISVTTDL- 193 (452)
T ss_pred eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhH-H-------hh-cCCcEEEECC-
Confidence 47999999999999999998861 332 134666666432222222222222111 0 11 1134333221
Q ss_pred CCCcCCCCHHHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCC--ceEEEEee
Q psy11859 295 LQANLGIKDSDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKK--LVAFIHFS 360 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~--~~~fV~vS 360 (851)
...++++|+||=+||..+-. .+..+.++.|+.-.+.+.++..+... .+.+|-+|
T Consensus 194 ------------~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~t 250 (452)
T cd05295 194 ------------DVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGR 250 (452)
T ss_pred ------------HHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence 24568999999999986543 45668899999999999999988763 44444443
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.016 Score=63.48 Aligned_cols=121 Identities=14% Similarity=0.114 Sum_probs=72.9
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|.|+||||.+|..++..|+..+. ...|.+++|..+........ .++.+.+... ..... ++-..
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~-~~~v~lvd~~~~~~~l~~~~-----~dl~d~~~~~----~~~~~-----i~~~~ 65 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDV-VKEINLISRPKSLEKLKGLR-----LDIYDALAAA----GIDAE-----IKISS 65 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEECccccccccccc-----chhhhchhcc----CCCcE-----EEECC
Confidence 5899999999999999999998753 35799999954211111100 0111111100 00111 11111
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
+.+ .+.++|+||=+|+...-. .+..+..+.|+.-.+.+++...+...-..+|.+|+
T Consensus 66 ------d~~-~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~n 122 (309)
T cd05294 66 ------DLS-DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTN 122 (309)
T ss_pred ------CHH-HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 222 378999999999976543 34467788999999999988776642223444443
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.031 Score=57.09 Aligned_cols=130 Identities=17% Similarity=0.229 Sum_probs=81.9
Q ss_pred chhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH-------HHH---hcChhhHHHhhhC
Q psy11859 211 DVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-------AEF---SKLPVFERLRKEC 280 (851)
Q Consensus 211 ~i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl-------~~~---~~~~~f~~l~~~~ 280 (851)
+.++-+++.+|+|.|++| +|+++++.|++.| |.+|.+++...-..+...|. .++ .....-++|++.+
T Consensus 12 ~~q~~L~~s~VlviG~gg-lGsevak~L~~~G--Vg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lN 88 (198)
T cd01485 12 EAQNKLRSAKVLIIGAGA-LGAEIAKNLVLAG--IDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELN 88 (198)
T ss_pred HHHHHHhhCcEEEECCCH-HHHHHHHHHHHcC--CCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHC
Confidence 355667889999999999 9999999999976 58999998764322111111 000 0112344566666
Q ss_pred cccCCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEee
Q psy11859 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFS 360 (851)
Q Consensus 281 ~~~~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vS 360 (851)
|+. +++.+..++.+.. +.....+++.|+||-+-. +.... ..+-++|++.+ ..||+.+
T Consensus 89 p~v--~i~~~~~~~~~~~-----~~~~~~~~~~dvVi~~~d------~~~~~--------~~ln~~c~~~~--ip~i~~~ 145 (198)
T cd01485 89 PNV--KLSIVEEDSLSND-----SNIEEYLQKFTLVIATEE------NYERT--------AKVNDVCRKHH--IPFISCA 145 (198)
T ss_pred CCC--EEEEEecccccch-----hhHHHHHhCCCEEEECCC------CHHHH--------HHHHHHHHHcC--CCEEEEE
Confidence 765 6777777775311 244566788999995532 12222 23447788775 4788888
Q ss_pred eeeeeC
Q psy11859 361 TAFCHP 366 (851)
Q Consensus 361 Ta~~~~ 366 (851)
+...+|
T Consensus 146 ~~G~~G 151 (198)
T cd01485 146 TYGLIG 151 (198)
T ss_pred eecCEE
Confidence 754444
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.034 Score=61.11 Aligned_cols=121 Identities=17% Similarity=0.052 Sum_probs=76.2
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCcc-----EEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIG-----KVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~-----~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
.-+|.|+||+|++|+.++-.|+..+ -+. .|+++++.+....+.....++.... .+ ....+.+. +
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~-~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~--------~~-~~~~~~i~-~ 71 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGE-LFGKDQPVVLHLLDIPPAMKALEGVAMELEDCA--------FP-LLAGVVAT-T 71 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCC-cccCCCccEEEEEecCCcccccchHHHHHhhcc--------cc-ccCCcEEe-c
Confidence 3479999999999999999988764 234 7999988653211111111211100 01 01122211 1
Q ss_pred CCCCCcCCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 293 DILQANLGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
.....++++|+||-+|+..+- .++..+.+..|+.-.+.+.....++.....++.+-|
T Consensus 72 ------------~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 72 ------------DPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred ------------ChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 112346899999999997653 346678899999999999999988752255555555
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0026 Score=66.29 Aligned_cols=68 Identities=21% Similarity=0.289 Sum_probs=45.2
Q ss_pred CcccccccCCccCccccChhhHHHHHh-hhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCCCCccccccc
Q psy11859 716 LVRTFQCTYPECLKFYAKMSHLKAHLR-RHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLLAIL 794 (851)
Q Consensus 716 ~~r~~~C~~~~Cgk~F~~~~~L~~H~~-~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~Cgk~f~~~~~ 794 (851)
++|||+|..+.|.|.+.....|+-|+. -|...+.++-+ .-..|...-...|||.|++|+|++....-
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p------------~p~~~~~F~~~~KPYrCevC~KRYKNlNG 413 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENP------------SPEKMNIFSAKDKPYRCEVCDKRYKNLNG 413 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccccCcccCCCC------------CccccccccccCCceeccccchhhccCcc
Confidence 359999998999999999999999975 23333322211 11222333456799999999998754433
Q ss_pred c
Q psy11859 795 N 795 (851)
Q Consensus 795 ~ 795 (851)
|
T Consensus 414 L 414 (423)
T COG5189 414 L 414 (423)
T ss_pred c
Confidence 3
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.055 Score=59.57 Aligned_cols=121 Identities=17% Similarity=0.075 Sum_probs=74.1
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCcc-----EEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIG-----KVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~-----~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
.++|.|+||+|.+|+.++-.|+..+ -.. .|.++++.+..........++.+.. .+ ...++.+..+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~-~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~--------~~-~~~~~~i~~~ 73 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGD-MLGKDQPVILQLLEIPPALKALEGVVMELDDCA--------FP-LLAGVVITDD 73 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhh-hcCCCCccEEEEEecCCcccccceeehhhhhhh--------hh-hcCCcEEecC
Confidence 4689999999999999999888653 223 7888888543211111111111100 00 0112222111
Q ss_pred CCCCCcCCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 293 DILQANLGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
+ ...++++|+||-+|+..+- ..+..+.+..|+.-.+++.+...++.....++.+-|
T Consensus 74 ------------~-y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 130 (326)
T PRK05442 74 ------------P-NVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG 130 (326)
T ss_pred ------------h-HHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 1 2346899999999997543 356678899999999999999888432344444444
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.012 Score=66.29 Aligned_cols=76 Identities=21% Similarity=0.337 Sum_probs=54.6
Q ss_pred cCCCEEEEecC----------------ccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhh
Q psy11859 216 YAGRSVLVTGG----------------TGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKE 279 (851)
Q Consensus 216 ~~~k~VlVTGa----------------tGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~ 279 (851)
++|++|||||| ||.+|..+++.|...| .+|+++.++....
T Consensus 183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~G---a~V~~~~g~~~~~--------------------- 238 (390)
T TIGR00521 183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRG---ADVTLITGPVSLL--------------------- 238 (390)
T ss_pred cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCC---CEEEEeCCCCccC---------------------
Confidence 68999999999 5899999999999999 7788777654321
Q ss_pred CcccCCCeEEEEcCCCCCcCCCCHHHH-HHH----hcCccEEEEccccCCcc
Q psy11859 280 CPAQLSRLHIIEGDILQANLGIKDSDL-LML----QEEVSVVFNGAASLKLE 326 (851)
Q Consensus 280 ~~~~~~~v~~v~gDi~~~~lgls~~~~-~~~----~~~vd~ViH~AA~~~~~ 326 (851)
.| ..+ ...|+++.+ ++ +.+ ..+.|++||+||..++.
T Consensus 239 ~~---~~~--~~~~v~~~~------~~~~~~~~~~~~~~D~~i~~Aavsd~~ 279 (390)
T TIGR00521 239 TP---PGV--KSIKVSTAE------EMLEAALNELAKDFDIFISAAAVADFK 279 (390)
T ss_pred CC---CCc--EEEEeccHH------HHHHHHHHhhcccCCEEEEcccccccc
Confidence 01 122 345777654 44 333 34689999999998763
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.059 Score=57.80 Aligned_cols=125 Identities=16% Similarity=0.152 Sum_probs=79.5
Q ss_pred chhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH-----HHHhc---ChhhHHHhhhCcc
Q psy11859 211 DVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-----AEFSK---LPVFERLRKECPA 282 (851)
Q Consensus 211 ~i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl-----~~~~~---~~~f~~l~~~~~~ 282 (851)
+-++-+++.+|+|.|++| +|+.++..|.+.| |.+|.+++...-..+-..|. .++-. ...-++|++.+|.
T Consensus 20 e~Q~kL~~s~VlIvG~GG-LGs~va~~LA~aG--VG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~ 96 (287)
T PRK08223 20 TEQQRLRNSRVAIAGLGG-VGGIHLLTLARLG--IGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPE 96 (287)
T ss_pred HHHHHHhcCCEEEECCCH-HHHHHHHHHHHhC--CCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCC
Confidence 345668889999998876 8999999999987 58899888765333222221 11111 1223455666665
Q ss_pred cCCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 283 QLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 283 ~~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
. +|+.+...++.. ....+++++|+|+.+.-... +..-..+-++|.+.+ ..||+.|+
T Consensus 97 v--~V~~~~~~l~~~-------n~~~ll~~~DlVvD~~D~~~------------~~~r~~ln~~c~~~~--iP~V~~~~ 152 (287)
T PRK08223 97 L--EIRAFPEGIGKE-------NADAFLDGVDVYVDGLDFFE------------FDARRLVFAACQQRG--IPALTAAP 152 (287)
T ss_pred C--EEEEEecccCcc-------CHHHHHhCCCEEEECCCCCc------------HHHHHHHHHHHHHcC--CCEEEEec
Confidence 4 677777777754 45667889999985442211 111234567788775 56787755
|
|
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.01 Score=61.98 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=23.7
Q ss_pred EEe-cCccHHHHHHHHHHHHhCCCccEEEEEec
Q psy11859 222 LVT-GGTGFMGKVLLEKLLRSCPDIGKVYILCR 253 (851)
Q Consensus 222 lVT-GatGFIG~~Lv~~Ll~~g~~v~~V~~l~R 253 (851)
+|| .++|.||.++++.|++.| .+|+++.+
T Consensus 18 ~itN~SSGgIG~AIA~~la~~G---a~Vvlv~~ 47 (227)
T TIGR02114 18 SITNHSTGHLGKIITETFLSAG---HEVTLVTT 47 (227)
T ss_pred eecCCcccHHHHHHHHHHHHCC---CEEEEEcC
Confidence 444 569999999999999999 67777765
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.16 Score=55.78 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=76.6
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++++|.|+|| |.+|+.++-.|+..+ -+.+|.++++.+..... ...++.+ -.+.. .++.+..+|
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~-~~~el~L~D~~~~~~~g--~~~Dl~~---------~~~~~-~~~~i~~~~--- 67 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQG-IADELVIIDINKEKAEG--DAMDLSH---------AVPFT-SPTKIYAGD--- 67 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeCCCchhHH--HHHHHHh---------hcccc-CCeEEEeCC---
Confidence 4679999998 999999999888764 44689999986543211 1112111 11111 233333222
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
++ .++++|+||-+|+...- ..+..+.+..|+.-.+.+++...+.. ...+|.+=|
T Consensus 68 ---------~~-~~~~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvs 122 (315)
T PRK00066 68 ---------YS-DCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVAS 122 (315)
T ss_pred ---------HH-HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcc
Confidence 22 35899999999997654 34556889999999999998888764 444444433
|
|
| >PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0042 Score=39.61 Aligned_cols=20 Identities=50% Similarity=0.858 Sum_probs=11.3
Q ss_pred CccCccccChhhHHHHHhhh
Q psy11859 725 PECLKFYAKMSHLKAHLRRH 744 (851)
Q Consensus 725 ~~Cgk~F~~~~~L~~H~~~H 744 (851)
+.|++.|.+.+.|..|++.|
T Consensus 4 ~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 4 PICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp TTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHhHC
Confidence 55555555555555555543
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A .... |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.084 Score=55.81 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=79.8
Q ss_pred hhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH-----HHHhc---ChhhHHHhhhCccc
Q psy11859 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-----AEFSK---LPVFERLRKECPAQ 283 (851)
Q Consensus 212 i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl-----~~~~~---~~~f~~l~~~~~~~ 283 (851)
-++-+++++|+|.|+ |-+|+.++..|.+.| |.++.+++...-..+...|. .++-. ...-++|++.+|+.
T Consensus 26 ~Q~~L~~~~VliiG~-GglGs~va~~La~~G--vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v 102 (245)
T PRK05690 26 GQEKLKAARVLVVGL-GGLGCAASQYLAAAG--VGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHI 102 (245)
T ss_pred HHHHhcCCeEEEECC-CHHHHHHHHHHHHcC--CCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCC
Confidence 456678899999999 889999999999976 68999988765443333331 11111 11234555556654
Q ss_pred CCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeee
Q psy11859 284 LSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTA 362 (851)
Q Consensus 284 ~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa 362 (851)
+++.+...+.. .....+++++|+||-+.... . .-..+-++|.+.+ ..||+.++.
T Consensus 103 --~i~~~~~~i~~-------~~~~~~~~~~DiVi~~~D~~------~--------~r~~ln~~~~~~~--ip~v~~~~~ 156 (245)
T PRK05690 103 --AIETINARLDD-------DELAALIAGHDLVLDCTDNV------A--------TRNQLNRACFAAK--KPLVSGAAI 156 (245)
T ss_pred --EEEEEeccCCH-------HHHHHHHhcCCEEEecCCCH------H--------HHHHHHHHHHHhC--CEEEEeeec
Confidence 67777666653 35667788999999987432 1 1123557777775 567776554
|
|
| >KOG3516|consensus | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.01 Score=72.14 Aligned_cols=144 Identities=28% Similarity=0.455 Sum_probs=107.2
Q ss_pred CHHHHHHHHH-hHHhhhhcCCCCCChHHHHHHHHHHHHHHHHHHhhhhcccceeEEecCCCCCCCCcccccccccccccc
Q psy11859 42 NIDDYLKTII-LGARQYCLKEPLTTLPKARRQIKLYRKTCEELALLGVTESNVYLIDIDGNGRFPPARVKCEFQEDSTKT 120 (851)
Q Consensus 42 ~w~~y~~~~~-~G~r~yl~ke~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ddd~~~~ 120 (851)
.|++|+-+|= -|-+-=..+-+. .| .-|..|.-.+++ +|.++|+.++-+|--|..|.|.|.+|+.+|
T Consensus 562 s~~~f~C~C~~TGY~GatCHtsi--~e----------~SCeay~~~~~t-~~~~~iD~DGsGpl~Pl~v~C~~~ed~awT 628 (1306)
T KOG3516|consen 562 SWDDFECNCELTGYKGATCHTSI--YE----------LSCEAYKNIGQT-SGNFLIDSDGSGPLEPLQVYCNITEDRAWT 628 (1306)
T ss_pred cccceeEeccccccccccccCCC--cc----------hhhHHhhhhccc-cceEEEccCCCCcccceEEEEecccCceEE
Confidence 5777777663 333332333222 22 235555556778 999999999999999999999999999999
Q ss_pred eecCCCCCcccccccccccchhhhhhhhhhHHHHHHhhhhhhhhhhhhcccccCCCCCCCCC----CccCcccCcccccc
Q psy11859 121 IVEHNLPDQTDVRGIHETDFKFTIKYREFTQEMLSELISHSLYCRQRIKYECHQAPLDLHSA----TWFTSAANQSVDYV 196 (851)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 196 (851)
+|+|++...+.|...-++..-.+..+-.++.+|++.+++.+..|.+.+.+.|..+.+..... +|.-....|-....
T Consensus 629 vv~H~~~~~t~V~g~n~~g~~~~s~~y~as~eQ~~al~n~se~CeQ~i~y~C~~sRllnt~~g~P~Swwigr~ne~~~yW 708 (1306)
T KOG3516|consen 629 VVQHDNLGTTRVRGSNPEGPVAISLFYAASMEQLQALLNRSEHCEQEIEYSCRESRLLNTPDGTPFSWWIGRSNEGHVYW 708 (1306)
T ss_pred EEEeCCccceEEeccCCCCceeEeeehhccHHHHHHHhhhhhhhheeeeeeeccceeeeCCCCCeeEEEecccCCcccee
Confidence 99999888888888777766555667799999999999999999999999999988843221 55555555554443
Q ss_pred cc
Q psy11859 197 GD 198 (851)
Q Consensus 197 ~~ 198 (851)
+.
T Consensus 709 GG 710 (1306)
T KOG3516|consen 709 GG 710 (1306)
T ss_pred cC
Confidence 33
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.033 Score=60.42 Aligned_cols=85 Identities=12% Similarity=0.146 Sum_probs=56.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
.++++|+|||| |=+|+.++..|++.|. .+|+++.|..... ++.+++. +.+.. ....+.+...|+.
T Consensus 124 ~~~k~vlI~GA-GGagrAia~~La~~G~--~~V~I~~R~~~~~---~~a~~l~-----~~l~~----~~~~~~~~~~d~~ 188 (289)
T PRK12548 124 VKGKKLTVIGA-GGAATAIQVQCALDGA--KEITIFNIKDDFY---ERAEQTA-----EKIKQ----EVPECIVNVYDLN 188 (289)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCC--CEEEEEeCCchHH---HHHHHHH-----HHHhh----cCCCceeEEechh
Confidence 46899999999 7999999999998873 6799999975211 1222211 11111 1123445567877
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccc
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAA 321 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA 321 (851)
+.+ ++...++.+|+|||+-.
T Consensus 189 ~~~------~~~~~~~~~DilINaTp 208 (289)
T PRK12548 189 DTE------KLKAEIASSDILVNATL 208 (289)
T ss_pred hhh------HHHhhhccCCEEEEeCC
Confidence 654 56666778899999654
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.16 Score=55.53 Aligned_cols=116 Identities=16% Similarity=0.059 Sum_probs=75.5
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
++|.|+||+|.+|+.++-.|+..+ -+.+|.+++.. ........+.+ . . ...++.-..+| +
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~-~~~elvLiDi~-~a~g~alDL~~---~---------~--~~~~i~~~~~~----~ 60 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNP-LVSELALYDIV-NTPGVAADLSH---I---------N--TPAKVTGYLGP----E 60 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CCcEEEEEecC-ccceeehHhHh---C---------C--CcceEEEecCC----C
Confidence 589999999999999999887654 45688998886 21110011110 0 0 00112111111 1
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
++...++++|+||=+||...- .++-.+.++.|+.-.+.+.+...+.. ...++.+=|
T Consensus 61 ------~~y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvt 117 (310)
T cd01337 61 ------ELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIIS 117 (310)
T ss_pred ------chHHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcc
Confidence 334557899999999998653 34567889999999999999988875 566555544
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.058 Score=55.05 Aligned_cols=123 Identities=20% Similarity=0.228 Sum_probs=77.2
Q ss_pred hhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHH-----HHHH---hcChhhHHHhhhCccc
Q psy11859 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKAR-----LAEF---SKLPVFERLRKECPAQ 283 (851)
Q Consensus 212 i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~r-----l~~~---~~~~~f~~l~~~~~~~ 283 (851)
-++-+++++|+|.|++| +|+++++.|.+.| |.+|.+++...-..+...| -.++ .....-++|++.+|+.
T Consensus 15 ~Q~~L~~s~VlIiG~gg-lG~evak~La~~G--Vg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v 91 (197)
T cd01492 15 AQKRLRSARILLIGLKG-LGAEIAKNLVLSG--IGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRV 91 (197)
T ss_pred HHHHHHhCcEEEEcCCH-HHHHHHHHHHHcC--CCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCC
Confidence 45667889999999988 9999999999876 6889998876432211111 0011 0112344566667765
Q ss_pred CCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeee
Q psy11859 284 LSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAF 363 (851)
Q Consensus 284 ~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~ 363 (851)
+++++...+.+ .....++++|+||-+... ..... .+-++|++.+ ..||+.++..
T Consensus 92 --~i~~~~~~~~~--------~~~~~~~~~dvVi~~~~~------~~~~~--------~ln~~c~~~~--ip~i~~~~~G 145 (197)
T cd01492 92 --KVSVDTDDISE--------KPEEFFSQFDVVVATELS------RAELV--------KINELCRKLG--VKFYATGVHG 145 (197)
T ss_pred --EEEEEecCccc--------cHHHHHhCCCEEEECCCC------HHHHH--------HHHHHHHHcC--CCEEEEEecC
Confidence 67777766652 123456889999965432 22222 2346788775 3678888753
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.1 Score=54.97 Aligned_cols=128 Identities=17% Similarity=0.190 Sum_probs=79.7
Q ss_pred chhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH-----HHHhcC---hhhHHHhhhCcc
Q psy11859 211 DVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-----AEFSKL---PVFERLRKECPA 282 (851)
Q Consensus 211 ~i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl-----~~~~~~---~~f~~l~~~~~~ 282 (851)
+.++-+++.+|+|.|++| +|+.++..|.+.| |.+|.+++...-..+-..|. .++-.. ..-++|++.+|+
T Consensus 17 ~~q~~L~~~~VlvvG~Gg-lGs~va~~La~~G--vg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~ 93 (240)
T TIGR02355 17 DGQEALKASRVLIVGLGG-LGCAASQYLAAAG--VGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPH 93 (240)
T ss_pred HHHHHHhCCcEEEECcCH-HHHHHHHHHHHcC--CCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCC
Confidence 345668889999998765 8999999999976 68999988875443322221 111111 122445555555
Q ss_pred cCCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeee
Q psy11859 283 QLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTA 362 (851)
Q Consensus 283 ~~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa 362 (851)
. +++.+...+.. +....++++.|+||.+.... . ....|-++|.+.+ ..||+.++.
T Consensus 94 v--~i~~~~~~i~~-------~~~~~~~~~~DlVvd~~D~~------~--------~r~~ln~~~~~~~--ip~v~~~~~ 148 (240)
T TIGR02355 94 I--AINPINAKLDD-------AELAALIAEHDIVVDCTDNV------E--------VRNQLNRQCFAAK--VPLVSGAAI 148 (240)
T ss_pred c--EEEEEeccCCH-------HHHHHHhhcCCEEEEcCCCH------H--------HHHHHHHHHHHcC--CCEEEEEec
Confidence 4 56666555542 35667788999999987542 1 1133457787775 567776654
Q ss_pred eeeC
Q psy11859 363 FCHP 366 (851)
Q Consensus 363 ~~~~ 366 (851)
...|
T Consensus 149 g~~G 152 (240)
T TIGR02355 149 RMEG 152 (240)
T ss_pred ccEe
Confidence 3333
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.071 Score=59.12 Aligned_cols=38 Identities=32% Similarity=0.470 Sum_probs=31.5
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK 255 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~ 255 (851)
+++|+|.||||++|..|++.|.++++.+.+|..+.+..
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~ 38 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASAR 38 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccc
Confidence 46899999999999999999998764446778887764
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.11 Score=60.23 Aligned_cols=77 Identities=22% Similarity=0.268 Sum_probs=54.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+|+||||++ +|..+++.|++.| +.|.+.++.... ...+.+. +|.. ..+.++.+|..
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G---~~V~~~d~~~~~-~~~~~~~---------~l~~------~~~~~~~~~~~ 62 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKLG---AKVILTDEKEED-QLKEALE---------ELGE------LGIELVLGEYP 62 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHCC---CEEEEEeCCchH-HHHHHHH---------HHHh------cCCEEEeCCcc
Confidence 4689999999999 9999999999999 788888775421 1111111 1111 14667888887
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccC
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASL 323 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~ 323 (851)
+. ...++|+||++++..
T Consensus 63 ~~-----------~~~~~d~vv~~~g~~ 79 (450)
T PRK14106 63 EE-----------FLEGVDLVVVSPGVP 79 (450)
T ss_pred hh-----------HhhcCCEEEECCCCC
Confidence 52 245799999999864
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.16 Score=54.15 Aligned_cols=36 Identities=31% Similarity=0.409 Sum_probs=27.2
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK 255 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~ 255 (851)
++|.|+|++|.+|+.+++.+.+. +++.-+.+.++..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~-~~~elvav~d~~~ 37 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA-EDLELVAAVDRPG 37 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCC
Confidence 58999999999999999887764 5654455555543
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.23 Score=55.32 Aligned_cols=182 Identities=18% Similarity=0.218 Sum_probs=89.8
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEec-CCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEE-EcCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCR-AKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHII-EGDILQ 296 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R-~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v-~gDi~~ 296 (851)
++|+|.||||++|+.+++.|++. |++ +|.++.+ ...+. ++.+ ..+ ++..+ ..++.+
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~-p~~-elv~v~~~~~~g~----~l~~------------~~~----~~~~~~~~~~~~ 60 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNH-PEV-EIVAVTSRSSAGK----PLSD------------VHP----HLRGLVDLVLEP 60 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcC-CCc-eEEEEECccccCc----chHH------------hCc----ccccccCceeec
Confidence 68999999999999999999875 665 4544444 33221 1111 001 11111 223333
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccC
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLY 376 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~ 376 (851)
.+ +. ...++|+||=+.... ...+++..|.+.+ +.+|=.|+++-..+.. .-+..|
T Consensus 61 ~~------~~--~~~~vD~Vf~alP~~---------------~~~~~v~~a~~aG--~~VID~S~~fR~~~~~-~~~~~y 114 (343)
T PRK00436 61 LD------PE--ILAGADVVFLALPHG---------------VSMDLAPQLLEAG--VKVIDLSADFRLKDPE-VYEKWY 114 (343)
T ss_pred CC------HH--HhcCCCEEEECCCcH---------------HHHHHHHHHHhCC--CEEEECCcccCCCCch-hhHHhc
Confidence 32 22 346799998765431 1133445555555 5788888876553311 111122
Q ss_pred CCCCCHHHHHHH-HhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCC---CEEEEecccccCCCCCCch
Q psy11859 377 PSPVSPHDIMRA-MEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKL---PVVIVRPSIVLPSFQEPVP 449 (851)
Q Consensus 377 ~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l---~~~ivRp~~V~G~~~~p~p 449 (851)
..|....+++.- .=-+++-.-+.+....+-.-||.|+.+=.++=.=+.+.. .+ ++++-=.+.+-|.+..++.
T Consensus 115 ~~~~~~~~~~~~~~~~lpe~~~~~i~~~~iIanPgC~~t~~~l~L~PL~~~~-~i~~~~i~v~~~~g~SGaG~~~~~ 190 (343)
T PRK00436 115 GFEHAAPELLKEAVYGLPELNREEIKGARLIANPGCYPTASLLALAPLLKAG-LIDPDSIIIDAKSGVSGAGRKASE 190 (343)
T ss_pred CCCCCCchhhcCceeecCccCHHHhcCCCEEECCCCHHHHHHHHHHHHHHcC-CCCCCCEEEEEEEecccCCCCccc
Confidence 111110000000 000011111112222233458889887777665554432 23 3666666677777766533
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.17 Score=56.31 Aligned_cols=182 Identities=19% Similarity=0.246 Sum_probs=88.3
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC-CCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEE-EcCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK-RGLTPKARLAEFSKLPVFERLRKECPAQLSRLHII-EGDILQ 296 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~-~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v-~gDi~~ 296 (851)
++|.|.||||++|..+++.|++. |.+.-+.++.+.. .+.. +.+. .+ .+..+ ..++.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-P~~el~~l~~s~~sagk~----~~~~------------~~----~l~~~~~~~~~~ 59 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-PEVEITYLVSSRESAGKP----VSEV------------HP----HLRGLVDLNLEP 59 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-CCceEEEEeccchhcCCC----hHHh------------Cc----cccccCCceeec
Confidence 47999999999999999999865 7754333434332 3321 1110 11 11111 111221
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccC
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLY 376 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~ 376 (851)
. +...+.+++|+||=+.... ...+++..+.+.+ +++|=.|+++-..+.. .-|..|
T Consensus 60 ~-------~~~~~~~~~DvVf~alP~~---------------~s~~~~~~~~~~G--~~VIDlS~~fR~~~~~-~y~~~y 114 (346)
T TIGR01850 60 I-------DEEEIAEDADVVFLALPHG---------------VSAELAPELLAAG--VKVIDLSADFRLKDPE-VYEKWY 114 (346)
T ss_pred C-------CHHHhhcCCCEEEECCCch---------------HHHHHHHHHHhCC--CEEEeCChhhhcCChh-hhHHhc
Confidence 1 2223335799999877542 2345556665665 6788899976543311 111122
Q ss_pred CCCCCHHHHHHHH-hhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCC---CEEEEecccccCCCCCC
Q psy11859 377 PSPVSPHDIMRAM-EWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKL---PVVIVRPSIVLPSFQEP 447 (851)
Q Consensus 377 ~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l---~~~ivRp~~V~G~~~~p 447 (851)
..+....++++-+ =-+++-.-+.+...-+-.-||.|+.+=.++=.=+.+.. .+ .+++-=.+.|-|.+..+
T Consensus 115 ~~~~~~~~~~~~~~y~lPE~n~~~i~~~~iianPgC~~t~~~l~L~PL~~~~-~i~~~~i~v~~~sgvSGaG~~~ 188 (346)
T TIGR01850 115 GFEHAGPELLQEAVYGLPELHREEIKGARLIANPGCYPTATLLALAPLLKEG-LIDPTSIIVDAKSGVSGAGRKA 188 (346)
T ss_pred CCCCCChhhhcCceEECCccCHHHhCCCcEEEcCCcHHHHHHHHHHHHHHcC-CCCCCcEEEEEEEECcccCcCc
Confidence 2111110111000 00011001112222233457888877666655444332 22 25555566667776554
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.11 Score=65.00 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=55.4
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCcc------------EEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIG------------KVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQL 284 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~------------~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~ 284 (851)
+.++|+|.|| |+||+..++.|.+. |++. .|.+.++.... .+++.+ . .
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~---a~~la~------------~----~ 626 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKD---AKETVE------------G----I 626 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHH---HHHHHH------------h----c
Confidence 4679999997 99999999999876 5533 35554444211 111111 1 1
Q ss_pred CCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEcccc
Q psy11859 285 SRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAAS 322 (851)
Q Consensus 285 ~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~ 322 (851)
+++..+..|++|.+ ++..+++++|+|+.+.-.
T Consensus 627 ~~~~~v~lDv~D~e------~L~~~v~~~DaVIsalP~ 658 (1042)
T PLN02819 627 ENAEAVQLDVSDSE------SLLKYVSQVDVVISLLPA 658 (1042)
T ss_pred CCCceEEeecCCHH------HHHHhhcCCCEEEECCCc
Confidence 25678999999876 788888899999999865
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.78 Score=47.02 Aligned_cols=110 Identities=11% Similarity=0.113 Sum_probs=69.7
Q ss_pred hcCCCEEEEecCc--cHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 215 WYAGRSVLVTGGT--GFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 215 ~~~~k~VlVTGat--GFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
+++||++||+|-. -.|+-.+.+.|.+.| .++...-..+ ....|++++.+ +. ..-.++++
T Consensus 3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~G---AeL~fTy~~e---~l~krv~~la~------------~~-~s~~v~~c 63 (259)
T COG0623 3 LLEGKRILIMGVANNRSIAWGIAKALAEQG---AELAFTYQGE---RLEKRVEELAE------------EL-GSDLVLPC 63 (259)
T ss_pred ccCCceEEEEEecccccHHHHHHHHHHHcC---CEEEEEeccH---HHHHHHHHHHh------------hc-cCCeEEec
Confidence 5789999999965 589999999999999 5555444333 23344443321 11 12346899
Q ss_pred CCCCCcCCCCHHHHHHHhc-------CccEEEEccccCCcc-----------hhHHHHHHHHHHHHHHHHHHHHh
Q psy11859 293 DILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKLE-----------AELKENVAANTRGTQRLLDIALK 349 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~-----------~~~~~~~~~Nv~Gt~~ll~~a~~ 349 (851)
|+++.+ ++..+++ +.|.|+|+-|...-+ +.+..+.++-+.+...|+++|+.
T Consensus 64 DV~~d~------~i~~~f~~i~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~ 132 (259)
T COG0623 64 DVTNDE------SIDALFATIKKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARP 132 (259)
T ss_pred CCCCHH------HHHHHHHHHHHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHH
Confidence 999875 6665543 579999999976421 12334455555555555555543
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.26 Score=53.53 Aligned_cols=117 Identities=17% Similarity=0.096 Sum_probs=77.1
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
++|.|+|| |.||+.++-.|+..+.. ..++++++.+...... . .++.... +.....+ .+.+| .
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~-~el~LiDi~~~~~~G~-a-~DL~~~~---------~~~~~~~-~i~~~-~--- 62 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLG-SELVLIDINEEKAEGV-A-LDLSHAA---------APLGSDV-KITGD-G--- 62 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhccccc-ceEEEEEcccccccch-h-cchhhcc---------hhccCce-EEecC-C---
Confidence 57999999 99999999999776532 3899999984432111 1 1111110 0011122 22232 1
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
+ ...+++.|+|+=.||..+-+ .+-.+.++.|..-.+.+.+...+.. ...++.+=|
T Consensus 63 ------~-y~~~~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~-~d~ivlVvt 118 (313)
T COG0039 63 ------D-YEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PDAIVLVVT 118 (313)
T ss_pred ------C-hhhhcCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCeEEEEec
Confidence 1 12357999999999877654 3567889999999999999888875 567777766
|
|
| >PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.0082 Score=38.26 Aligned_cols=23 Identities=43% Similarity=0.819 Sum_probs=20.9
Q ss_pred cccCccccCccccCchhHHHhhhhc
Q psy11859 750 FKCDWQDCKWQFSRSDELSRHRRSH 774 (851)
Q Consensus 750 ~~C~~~~C~k~F~~~~~L~~H~r~H 774 (851)
|.|+ .|++.|.++..|.+|++.|
T Consensus 1 y~C~--~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCP--ICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEET--TTTEEESSHHHHHHHHHHH
T ss_pred CCCC--CCCCccCCHHHHHHHHhHC
Confidence 6798 8999999999999999875
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A .... |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.18 Score=51.59 Aligned_cols=98 Identities=14% Similarity=0.248 Sum_probs=63.0
Q ss_pred cchhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecC---CCCCCHHH-HHHHHhc---ChhhHHHhhhCcc
Q psy11859 210 GDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRA---KRGLTPKA-RLAEFSK---LPVFERLRKECPA 282 (851)
Q Consensus 210 ~~i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~---~~~~~~~~-rl~~~~~---~~~f~~l~~~~~~ 282 (851)
.+.++-++.++|+|.|++| +|+.++..|.+.| |.+|++.++. ..+...+. ...++-. ...-+.|.+.+|.
T Consensus 13 ~~~q~~L~~~~V~IvG~Gg-lGs~ia~~La~~G--vg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~ 89 (200)
T TIGR02354 13 PKIVQKLEQATVAICGLGG-LGSNVAINLARAG--IGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPY 89 (200)
T ss_pred HHHHHHHhCCcEEEECcCH-HHHHHHHHHHHcC--CCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCC
Confidence 3466778899999999955 9999999999986 4689998887 33322110 0011100 1112234444444
Q ss_pred cCCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEc
Q psy11859 283 QLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNG 319 (851)
Q Consensus 283 ~~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~ 319 (851)
. +++.+..+++.. .+..++.++|+||-+
T Consensus 90 ~--~i~~~~~~i~~~-------~~~~~~~~~DlVi~a 117 (200)
T TIGR02354 90 T--EIEAYDEKITEE-------NIDKFFKDADIVCEA 117 (200)
T ss_pred C--EEEEeeeeCCHh-------HHHHHhcCCCEEEEC
Confidence 2 666777777643 566778899999987
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.14 Score=53.53 Aligned_cols=124 Identities=21% Similarity=0.173 Sum_probs=75.4
Q ss_pred hhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH-----HHHh---cChhhHHHhhhCcccC
Q psy11859 213 ARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-----AEFS---KLPVFERLRKECPAQL 284 (851)
Q Consensus 213 ~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl-----~~~~---~~~~f~~l~~~~~~~~ 284 (851)
++-+++.+|+|.|++| +|+++++.|.+.| |.++.+++...-..+...|. .++- ...+-++|++.+|+.
T Consensus 6 ~~~L~~~~VlVvG~GG-vGs~va~~Lar~G--Vg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~- 81 (231)
T cd00755 6 LEKLRNAHVAVVGLGG-VGSWAAEALARSG--VGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPEC- 81 (231)
T ss_pred HHHHhCCCEEEECCCH-HHHHHHHHHHHcC--CCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCc-
Confidence 3456788999998765 8999999999976 58999988764332222221 0111 112234555556644
Q ss_pred CCeEEEEcCCCCCcCCCCHHHHHHHh-cCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeee
Q psy11859 285 SRLHIIEGDILQANLGIKDSDLLMLQ-EEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAF 363 (851)
Q Consensus 285 ~~v~~v~gDi~~~~lgls~~~~~~~~-~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~ 363 (851)
+|+.+...++.. ....++ .++|+||-+.... .....|.++|.+.+ ..||.+.+++
T Consensus 82 -~V~~~~~~i~~~-------~~~~l~~~~~D~VvdaiD~~--------------~~k~~L~~~c~~~~--ip~I~s~g~g 137 (231)
T cd00755 82 -EVDAVEEFLTPD-------NSEDLLGGDPDFVVDAIDSI--------------RAKVALIAYCRKRK--IPVISSMGAG 137 (231)
T ss_pred -EEEEeeeecCHh-------HHHHHhcCCCCEEEEcCCCH--------------HHHHHHHHHHHHhC--CCEEEEeCCc
Confidence 677777766633 334444 4699999886432 12234668888774 4566655544
Q ss_pred e
Q psy11859 364 C 364 (851)
Q Consensus 364 ~ 364 (851)
.
T Consensus 138 ~ 138 (231)
T cd00755 138 G 138 (231)
T ss_pred C
Confidence 3
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.012 Score=39.09 Aligned_cols=24 Identities=42% Similarity=0.873 Sum_probs=13.3
Q ss_pred cccccCCccCccccChhhHHHHHhhh
Q psy11859 719 TFQCTYPECLKFYAKMSHLKAHLRRH 744 (851)
Q Consensus 719 ~~~C~~~~Cgk~F~~~~~L~~H~~~H 744 (851)
||+| ..|++.|.+...|..|++.|
T Consensus 1 ~~~C--~~C~~~F~~~~~l~~H~~~h 24 (27)
T PF13912_consen 1 PFEC--DECGKTFSSLSALREHKRSH 24 (27)
T ss_dssp SEEE--TTTTEEESSHHHHHHHHCTT
T ss_pred CCCC--CccCCccCChhHHHHHhHHh
Confidence 3555 45555555555555555554
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.2 Score=51.26 Aligned_cols=125 Identities=15% Similarity=0.199 Sum_probs=77.8
Q ss_pred chhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHH-----HHh---cChhhHHHhhhCcc
Q psy11859 211 DVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLA-----EFS---KLPVFERLRKECPA 282 (851)
Q Consensus 211 ~i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~-----~~~---~~~~f~~l~~~~~~ 282 (851)
+.++-+++++|+|.| .|-+|+++++.|.+.| |.+|.+++...-..+...|.. ++- ....-++|++.+|.
T Consensus 14 ~~q~kl~~~~VlviG-~GglGs~ia~~La~~G--v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~ 90 (202)
T TIGR02356 14 EGQQRLLNSHVLIIG-AGGLGSPAALYLAGAG--VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSD 90 (202)
T ss_pred HHHHHhcCCCEEEEC-CCHHHHHHHHHHHHcC--CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCC
Confidence 356678889999998 5668999999999986 578999988743322222210 110 01123345555554
Q ss_pred cCCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeee
Q psy11859 283 QLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTA 362 (851)
Q Consensus 283 ~~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa 362 (851)
. +++.+..++.+ +.+..+++++|+||-+.... +.. ..+-++|.+.+ ..||+.++.
T Consensus 91 v--~i~~~~~~i~~-------~~~~~~~~~~D~Vi~~~d~~------~~r--------~~l~~~~~~~~--ip~i~~~~~ 145 (202)
T TIGR02356 91 I--QVTALKERVTA-------ENLELLINNVDLVLDCTDNF------ATR--------YLINDACVALG--TPLISAAVV 145 (202)
T ss_pred C--EEEEehhcCCH-------HHHHHHHhCCCEEEECCCCH------HHH--------HHHHHHHHHcC--CCEEEEEec
Confidence 3 56666655543 25667788999999876431 111 23557777775 468888764
Q ss_pred e
Q psy11859 363 F 363 (851)
Q Consensus 363 ~ 363 (851)
.
T Consensus 146 g 146 (202)
T TIGR02356 146 G 146 (202)
T ss_pred c
Confidence 3
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.12 Score=48.52 Aligned_cols=99 Identities=25% Similarity=0.281 Sum_probs=56.7
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
++|.|.|++|-+|+.+++.+++. ++..-+-+++|...... .+.+.++.. +. ...+.-.+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-~~~~lv~~v~~~~~~~~-g~d~g~~~~-----------------~~--~~~~~v~~ 59 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-PGFELVGAVDRKPSAKV-GKDVGELAG-----------------IG--PLGVPVTD 59 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-TTEEEEEEEETTTSTTT-TSBCHHHCT-----------------SS--T-SSBEBS
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CCcEEEEEEecCCcccc-cchhhhhhC-----------------cC--Ccccccch
Confidence 58999999999999999999986 56555666677652211 000001000 00 00111112
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
+++.+++.+|+||.+.- -.++...++.|.+++ ..+|.-.|
T Consensus 60 ------~l~~~~~~~DVvIDfT~---------------p~~~~~~~~~~~~~g--~~~ViGTT 99 (124)
T PF01113_consen 60 ------DLEELLEEADVVIDFTN---------------PDAVYDNLEYALKHG--VPLVIGTT 99 (124)
T ss_dssp -------HHHHTTH-SEEEEES----------------HHHHHHHHHHHHHHT---EEEEE-S
T ss_pred ------hHHHhcccCCEEEEcCC---------------hHHhHHHHHHHHhCC--CCEEEECC
Confidence 66777778999998761 224455778888875 45555555
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.15 Score=48.63 Aligned_cols=118 Identities=20% Similarity=0.256 Sum_probs=72.3
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHH--------HHHHHhcChhhHHHhhhCcccCCCeEE
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKA--------RLAEFSKLPVFERLRKECPAQLSRLHI 289 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~--------rl~~~~~~~~f~~l~~~~~~~~~~v~~ 289 (851)
+++|+|-|+ |-+|+.++..|.+.| |.++.+++...-...-.. .+.......+-+.|++.+|.. +++.
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~G--v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~--~v~~ 76 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSG--VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDV--EVEA 76 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHT--TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTS--EEEE
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhC--CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCce--eeee
Confidence 568999876 559999999999986 478988887532110000 000000112233455555544 6888
Q ss_pred EEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeee
Q psy11859 290 IEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAF 363 (851)
Q Consensus 290 v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~ 363 (851)
+..++.+ +....+++++|+||.+.... .....+.++|++.+ ..||++++..
T Consensus 77 ~~~~~~~-------~~~~~~~~~~d~vi~~~d~~--------------~~~~~l~~~~~~~~--~p~i~~~~~g 127 (135)
T PF00899_consen 77 IPEKIDE-------ENIEELLKDYDIVIDCVDSL--------------AARLLLNEICREYG--IPFIDAGVNG 127 (135)
T ss_dssp EESHCSH-------HHHHHHHHTSSEEEEESSSH--------------HHHHHHHHHHHHTT---EEEEEEEET
T ss_pred eeccccc-------ccccccccCCCEEEEecCCH--------------HHHHHHHHHHHHcC--CCEEEEEeec
Confidence 8888843 36677778999999986541 12234667888775 4788888753
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >COG5048 FOG: Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.01 Score=67.82 Aligned_cols=70 Identities=17% Similarity=0.187 Sum_probs=41.6
Q ss_pred ceeecCCccccchhhhhhhccc--ccCCc--ccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCcc
Q psy11859 691 IFTQILPAYLVDFIMVLIRQKT--FENLV--RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQ 760 (851)
Q Consensus 691 ~~~c~~c~~~~~~~~~l~~h~~--~h~~~--r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~ 760 (851)
++.|..|...|.....+..|.. .|+++ +|+.|.+..|++.|.....+..|...|++.+++.|....|.+.
T Consensus 289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (467)
T COG5048 289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSK 362 (467)
T ss_pred CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCccc
Confidence 4456666666666666666666 56666 6666621156666666666666666666666555543234433
|
|
| >PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.02 Score=45.23 Aligned_cols=50 Identities=34% Similarity=0.578 Sum_probs=29.4
Q ss_pred cccccCCccCccccChhhHHHHHh-hhcCC-CccccCccccCccccCchhHHHhhhhcC
Q psy11859 719 TFQCTYPECLKFYAKMSHLKAHLR-RHSGE-RSFKCDWQDCKWQFSRSDELSRHRRSHF 775 (851)
Q Consensus 719 ~~~C~~~~Cgk~F~~~~~L~~H~~-~H~ge-kp~~C~~~~C~k~F~~~~~L~~H~r~H~ 775 (851)
.|.| |.|++ ..+...|..|.. .|..+ +.+.|+ .|...+. .+|.+|+..++
T Consensus 2 ~f~C--P~C~~-~~~~~~L~~H~~~~H~~~~~~v~CP--iC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTC--PYCGK-GFSESSLVEHCEDEHRSESKNVVCP--ICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CcCC--CCCCC-ccCHHHHHHHHHhHCcCCCCCccCC--Cchhhhh--hHHHHHHHHhc
Confidence 3667 66777 445566777754 34443 456776 6766433 36777766543
|
Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown. |
| >PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.0032 Score=73.17 Aligned_cols=96 Identities=10% Similarity=0.004 Sum_probs=70.5
Q ss_pred HHHHhhhhcccceeEEecCCCCCCCCcccccccccccccceecCC--CCCcccccccccccc-hhhhhhhhhhHHHHHHh
Q psy11859 81 EELALLGVTESNVYLIDIDGNGRFPPARVKCEFQEDSTKTIVEHN--LPDQTDVRGIHETDF-KFTIKYREFTQEMLSEL 157 (851)
Q Consensus 81 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ddd~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 157 (851)
+++|+|+|. +|..+++.+..++...++|+||+|||.....+.+- +|+..++...+.++. .++||+|+.+.++++++
T Consensus 148 rvLIIGaG~-~a~~l~~~L~~~~~~g~~vVGfIDd~~~~~~i~gvPVlg~~d~l~~~~~~~~v~vIIAip~~~~~~r~~i 226 (476)
T PRK15204 148 KTIILGSGQ-NARGAYSALQSEEMMGFDVIAFFDTDASDAEINMLPVIKDTEIIWDLNRTGDVHYILAYEYTELEKTHFW 226 (476)
T ss_pred eEEEEECCH-HHHHHHHHHHhCccCCcEEEEEEcCCccccccCCCcccCCHHHHHHHHHhCCCcEEEEeCcCcHHHHHHH
Confidence 478999999 99999999988888889999999998765333221 444444434443332 46899999999999999
Q ss_pred hhhhhhhhhh-hcccccCCCC
Q psy11859 158 ISHSLYCRQR-IKYECHQAPL 177 (851)
Q Consensus 158 ~~~~~~~~~~-~~~~~~~~~~ 177 (851)
++.|...+++ +...|.....
T Consensus 227 l~~l~~~gv~~V~vIP~l~~l 247 (476)
T PRK15204 227 LRELSKHHCRSVTVVPSFRGL 247 (476)
T ss_pred HHHHhhcCCeEEEEeCCcccc
Confidence 9999887764 6776755443
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.21 Score=53.27 Aligned_cols=125 Identities=19% Similarity=0.221 Sum_probs=73.1
Q ss_pred hhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHH-----HH---hcChhhHHHhhhCccc
Q psy11859 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLA-----EF---SKLPVFERLRKECPAQ 283 (851)
Q Consensus 212 i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~-----~~---~~~~~f~~l~~~~~~~ 283 (851)
-.+-+++.+|+|.|++ -+|+++++.|.+.| |.+|.+++...-..+...|.- ++ ....+-+++++.+|+.
T Consensus 24 ~~~kL~~s~VlVvG~G-GVGs~vae~Lar~G--Vg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~ 100 (268)
T PRK15116 24 ALQLFADAHICVVGIG-GVGSWAAEALARTG--IGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPEC 100 (268)
T ss_pred HHHHhcCCCEEEECcC-HHHHHHHHHHHHcC--CCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCc
Confidence 3455788999999775 58999999999986 588888887643222111210 00 0012234455555543
Q ss_pred CCCeEEEEcCCCCCcCCCCHHHHHHHh-cCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeee
Q psy11859 284 LSRLHIIEGDILQANLGIKDSDLLMLQ-EEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTA 362 (851)
Q Consensus 284 ~~~v~~v~gDi~~~~lgls~~~~~~~~-~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa 362 (851)
+|+.+..-++ ++....++ .++|+||-+.... ..-..|.++|.+.+ ..||++..+
T Consensus 101 --~V~~i~~~i~-------~e~~~~ll~~~~D~VIdaiD~~--------------~~k~~L~~~c~~~~--ip~I~~gGa 155 (268)
T PRK15116 101 --RVTVVDDFIT-------PDNVAEYMSAGFSYVIDAIDSV--------------RPKAALIAYCRRNK--IPLVTTGGA 155 (268)
T ss_pred --EEEEEecccC-------hhhHHHHhcCCCCEEEEcCCCH--------------HHHHHHHHHHHHcC--CCEEEECCc
Confidence 5665543333 22444555 4799999887542 11234777888774 456655554
Q ss_pred ee
Q psy11859 363 FC 364 (851)
Q Consensus 363 ~~ 364 (851)
..
T Consensus 156 g~ 157 (268)
T PRK15116 156 GG 157 (268)
T ss_pred cc
Confidence 43
|
|
| >PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.018 Score=38.22 Aligned_cols=24 Identities=13% Similarity=-0.103 Sum_probs=12.5
Q ss_pred ceeecCCccccchhhhhhhccccc
Q psy11859 691 IFTQILPAYLVDFIMVLIRQKTFE 714 (851)
Q Consensus 691 ~~~c~~c~~~~~~~~~l~~h~~~h 714 (851)
||.|..|++.|.+...|..|++.|
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h 24 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSH 24 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTT
T ss_pred CCCCCccCCccCChhHHHHHhHHh
Confidence 345555555555555555555444
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.17 Score=57.21 Aligned_cols=122 Identities=18% Similarity=0.210 Sum_probs=74.5
Q ss_pred hhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH-----HHHh---cChhhHHHhhhCcccC
Q psy11859 213 ARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-----AEFS---KLPVFERLRKECPAQL 284 (851)
Q Consensus 213 ~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl-----~~~~---~~~~f~~l~~~~~~~~ 284 (851)
+.-+++++|+|.|++| +|+.++..|.+.| |.+|.++++..-..+...|. .++- ....-++|++.+|..
T Consensus 130 q~~l~~~~VlvvG~GG-~Gs~ia~~La~~G--vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v- 205 (376)
T PRK08762 130 QRRLLEARVLLIGAGG-LGSPAALYLAAAG--VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDV- 205 (376)
T ss_pred HHHHhcCcEEEECCCH-HHHHHHHHHHHcC--CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCC-
Confidence 4457889999997755 9999999999987 57899998874222111110 0000 011123344444442
Q ss_pred CCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeee
Q psy11859 285 SRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTA 362 (851)
Q Consensus 285 ~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa 362 (851)
+++.+...+.+ .....+++++|+||.+.... .. -..+-++|.+.+ ..||+.++.
T Consensus 206 -~v~~~~~~~~~-------~~~~~~~~~~D~Vv~~~d~~------~~--------r~~ln~~~~~~~--ip~i~~~~~ 259 (376)
T PRK08762 206 -QVEAVQERVTS-------DNVEALLQDVDVVVDGADNF------PT--------RYLLNDACVKLG--KPLVYGAVF 259 (376)
T ss_pred -EEEEEeccCCh-------HHHHHHHhCCCEEEECCCCH------HH--------HHHHHHHHHHcC--CCEEEEEec
Confidence 45566555543 24566778999999988542 11 112457787775 578888764
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.18 Score=57.16 Aligned_cols=127 Identities=14% Similarity=0.137 Sum_probs=79.3
Q ss_pred hhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH-----HHHhcC---hhhHHHhhhCccc
Q psy11859 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-----AEFSKL---PVFERLRKECPAQ 283 (851)
Q Consensus 212 i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl-----~~~~~~---~~f~~l~~~~~~~ 283 (851)
-+.-+++.+|||.|++| +|+.++..|.+.| |.+|.+++...-..+-..|- .++-.. ..-++|++.+|..
T Consensus 36 ~q~~L~~~~VlviG~GG-lGs~va~~La~~G--vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v 112 (392)
T PRK07878 36 GQKRLKNARVLVIGAGG-LGSPTLLYLAAAG--VGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLV 112 (392)
T ss_pred HHHHHhcCCEEEECCCH-HHHHHHHHHHHcC--CCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCc
Confidence 45567889999998866 8999999999976 57888888764332222221 111111 1233455555554
Q ss_pred CCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeee
Q psy11859 284 LSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAF 363 (851)
Q Consensus 284 ~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~ 363 (851)
+|+.+...++.. ....+++++|+|+-+.... . .-..+-++|.+.+ +.||+.++..
T Consensus 113 --~i~~~~~~i~~~-------~~~~~~~~~D~Vvd~~d~~------~--------~r~~ln~~~~~~~--~p~v~~~~~g 167 (392)
T PRK07878 113 --NVRLHEFRLDPS-------NAVELFSQYDLILDGTDNF------A--------TRYLVNDAAVLAG--KPYVWGSIYR 167 (392)
T ss_pred --EEEEEeccCChh-------HHHHHHhcCCEEEECCCCH------H--------HHHHHHHHHHHcC--CCEEEEEecc
Confidence 577777777643 4566788999999776321 1 1122456777775 5688887754
Q ss_pred eeC
Q psy11859 364 CHP 366 (851)
Q Consensus 364 ~~~ 366 (851)
.+|
T Consensus 168 ~~G 170 (392)
T PRK07878 168 FEG 170 (392)
T ss_pred CEE
Confidence 433
|
|
| >KOG1202|consensus | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.11 Score=63.22 Aligned_cols=172 Identities=21% Similarity=0.292 Sum_probs=113.4
Q ss_pred chhhhc--CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeE
Q psy11859 211 DVARWY--AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLH 288 (851)
Q Consensus 211 ~i~~~~--~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~ 288 (851)
.|+..| ..|+.+|+||-|=-|-.|..-|+.+|. ..+++..|+.-....+.+.- .+.+ +.--.|.
T Consensus 1759 AI~rt~~hpeksYii~GGLGGFGLELaqWLi~RGa--r~lVLtSRsGirtGYQa~~v--------rrWr----~~GVqV~ 1824 (2376)
T KOG1202|consen 1759 AIPRTYCHPEKSYIIVGGLGGFGLELAQWLIQRGA--RKLVLTSRSGIRTGYQALMV--------RRWR----RRGVQVQ 1824 (2376)
T ss_pred hcchhhcCccceEEEeccccchhHHHHHHHHhcCc--eEEEEeccccchhhHHHHHH--------HHHH----hcCeEEE
Confidence 355544 367899999999999999999999984 67777777653322222211 1111 1111333
Q ss_pred EEEcCCCCCcCCCCHHHHHHHhc------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh-cCCce
Q psy11859 289 IIEGDILQANLGIKDSDLLMLQE------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK-MKKLV 354 (851)
Q Consensus 289 ~v~gDi~~~~lgls~~~~~~~~~------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~-~~~~~ 354 (851)
+-.-||+... ....+++ -|--|||+||..+- ..+.++.-+.-+.||.||=.+.++ ++-++
T Consensus 1825 vsT~nitt~~------ga~~Li~~s~kl~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~Ld 1898 (2376)
T KOG1202|consen 1825 VSTSNITTAE------GARGLIEESNKLGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELD 1898 (2376)
T ss_pred Eecccchhhh------hHHHHHHHhhhcccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccc
Confidence 4445666443 4444444 36789999997653 234556677889999999888776 56789
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-CCCEE
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-KLPVV 433 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-~l~~~ 433 (851)
-||-.||..+.-.. ... ..||.+-...|+++.+... |+|-+
T Consensus 1899 yFv~FSSvscGRGN---------~GQ-----------------------------tNYG~aNS~MERiceqRr~~GfPG~ 1940 (2376)
T KOG1202|consen 1899 YFVVFSSVSCGRGN---------AGQ-----------------------------TNYGLANSAMERICEQRRHEGFPGT 1940 (2376)
T ss_pred eEEEEEeecccCCC---------Ccc-----------------------------cccchhhHHHHHHHHHhhhcCCCcc
Confidence 99999997543211 011 2399999999999977654 88887
Q ss_pred EEecccc
Q psy11859 434 IVRPSIV 440 (851)
Q Consensus 434 ivRp~~V 440 (851)
.+--|.|
T Consensus 1941 AiQWGAI 1947 (2376)
T KOG1202|consen 1941 AIQWGAI 1947 (2376)
T ss_pred eeeeecc
Confidence 7776654
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.1 Score=58.35 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=28.3
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK 255 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~ 255 (851)
++|+|+||||++|+.|++.|++. |++ +|..+.++.
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~-p~~-el~~~~~s~ 38 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH-PWF-EVTALAASE 38 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC-CCc-eEEEEEcCh
Confidence 68999999999999999999865 654 666665543
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.76 Score=50.88 Aligned_cols=164 Identities=16% Similarity=0.187 Sum_probs=92.2
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC-CCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK-RGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~-~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
++|.|+||||++|..|++.|.+++..+..|..+.... .+. ++. ... ...++.+.
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~----~l~------------------~~~---~~l~~~~~ 59 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGH----SVP------------------FAG---KNLRVREV 59 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCC----eec------------------cCC---cceEEeeC
Confidence 5899999999999999999997544445666664332 221 000 001 12334333
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccCC
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYP 377 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~~ 377 (851)
+ .. . ++++|+||=++..- . +..++..+.+.+ .++|=.|+++-..+ .+ |.
T Consensus 60 ~------~~-~-~~~vD~vFla~p~~-------~--------s~~~v~~~~~~G--~~VIDlS~~fR~~~-~p-----l~ 108 (336)
T PRK05671 60 D------SF-D-FSQVQLAFFAAGAA-------V--------SRSFAEKARAAG--CSVIDLSGALPSAQ-AP-----NV 108 (336)
T ss_pred C------hH-H-hcCCCEEEEcCCHH-------H--------HHHHHHHHHHCC--CeEEECchhhcCCC-CC-----EE
Confidence 2 11 1 36899999877421 1 122666666665 35777788765321 11 11
Q ss_pred CC-CCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchh
Q psy11859 378 SP-VSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPG 450 (851)
Q Consensus 378 ~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~ 450 (851)
.| +++ +.+....+..+-.-||.|+.+=.+|=.=+......-.++|-=...|-|.+..++..
T Consensus 109 lPEvn~------------~~i~~~~~~~iIAnPgC~~t~~~laL~PL~~~~~~~~v~v~t~~~vSGaG~~~~~~ 170 (336)
T PRK05671 109 VPEVNA------------ERLASLAAPFLVSSPSASAVALAVALAPLKGLLDIQRVQVTACLAVSSLGREGVSE 170 (336)
T ss_pred ecccCH------------HHHccccCCCEEECCCcHHHHHHHHHHHHHHhcCCCEEEEEEeecCcccCcccchH
Confidence 11 233 22222222334455899998877665555433322236666677888888777655
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.47 Score=53.30 Aligned_cols=121 Identities=16% Similarity=0.062 Sum_probs=73.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCcc-----EEEEE--ecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeE
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIG-----KVYIL--CRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLH 288 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~-----~V~~l--~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~ 288 (851)
-+.-+|.|+||+|.+|++++-.|+..+- +. .++++ ++.+.. ......++.+.. .|. ..++.
T Consensus 42 ~~p~KV~IIGAaG~VG~~~A~~l~~~~l-~~~~~ei~L~L~diD~~~~~--a~g~a~DL~d~a--------~~~-~~~v~ 109 (387)
T TIGR01757 42 KKTVNVAVSGAAGMISNHLLFMLASGEV-FGQDQPIALKLLGSERSKEA--LEGVAMELEDSL--------YPL-LREVS 109 (387)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhccc-cCCCCceEEEEeccCccchh--hhHHHHHHHHhh--------hhh-cCceE
Confidence 3345899999999999999999987642 22 23333 443322 121222222111 011 12333
Q ss_pred EEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 289 IIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 289 ~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
+..+| ...++++|+||=+|+..+-+ .+-.+.+..|+.-.+.+.....++.+...+|.+-|
T Consensus 110 i~~~~-------------y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs 170 (387)
T TIGR01757 110 IGIDP-------------YEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG 170 (387)
T ss_pred EecCC-------------HHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 22222 23458999999999986543 45668899999999999999988543455444444
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.074 Score=56.97 Aligned_cols=77 Identities=18% Similarity=0.209 Sum_probs=48.5
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
..++|-|||||.|..++|+|.+++. +-.+-.|+. ....++...+. ++ +-.-++-+
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g~---~~aLAgRs~---~kl~~l~~~LG-----------~~------~~~~p~~~-- 61 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREGL---TAALAGRSS---AKLDALRASLG-----------PE------AAVFPLGV-- 61 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcCC---chhhccCCH---HHHHHHHHhcC-----------cc------ccccCCCC--
Confidence 3689999999999999999999983 333334432 12233322211 11 11111222
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCC
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLK 324 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~ 324 (851)
+..++.+...+++|+||++...
T Consensus 62 ----p~~~~~~~~~~~VVlncvGPyt 83 (382)
T COG3268 62 ----PAALEAMASRTQVVLNCVGPYT 83 (382)
T ss_pred ----HHHHHHHHhcceEEEecccccc
Confidence 3478888999999999999754
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.44 Score=54.48 Aligned_cols=125 Identities=17% Similarity=0.066 Sum_probs=79.5
Q ss_pred hhhhcCCCEEEEecCccHHHHHHHHHHHHh---C---CCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCC
Q psy11859 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRS---C---PDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLS 285 (851)
Q Consensus 212 i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~---g---~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~ 285 (851)
...+-+.-+|.|+||+|.||++++-.|+.. + +-+.+|+++++.+...... ..++.+.. .+. ..
T Consensus 94 ~~~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~--amDL~daa--------~~~-~~ 162 (444)
T PLN00112 94 TKSWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGV--AMELEDSL--------YPL-LR 162 (444)
T ss_pred hhcCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHH--HHHHHHhh--------hhh-cC
Confidence 444555668999999999999999999875 1 2234788888766543221 11221110 011 11
Q ss_pred CeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHh-cCCceEEEEeee
Q psy11859 286 RLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALK-MKKLVAFIHFST 361 (851)
Q Consensus 286 ~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~-~~~~~~fV~vST 361 (851)
++.+..+| ...++++|+||=+||..+-+ .+-.+.++.|+.-.+.+.+...+ ++ ...+|.+-|
T Consensus 163 ~v~i~~~~-------------ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~-p~~ivIVVs 226 (444)
T PLN00112 163 EVSIGIDP-------------YEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVAS-RNVKVIVVG 226 (444)
T ss_pred ceEEecCC-------------HHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEEcC
Confidence 33222222 13457999999999986543 45668899999999999999988 44 344444444
|
|
| >PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.049 Score=43.01 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=35.9
Q ss_pred ceeecCCccccchhhhhhhc-ccccCCc-ccccccCCccCccccChhhHHHHHhhhc
Q psy11859 691 IFTQILPAYLVDFIMVLIRQ-KTFENLV-RTFQCTYPECLKFYAKMSHLKAHLRRHS 745 (851)
Q Consensus 691 ~~~c~~c~~~~~~~~~l~~h-~~~h~~~-r~~~C~~~~Cgk~F~~~~~L~~H~~~H~ 745 (851)
.|+|+.|++.|+ ...|..| ...|..+ +.+.| |.|...+. .+|..|+..+.
T Consensus 2 ~f~CP~C~~~~~-~~~L~~H~~~~H~~~~~~v~C--PiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTCPYCGKGFS-ESSLVEHCEDEHRSESKNVVC--PICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CcCCCCCCCccC-HHHHHHHHHhHCcCCCCCccC--CCchhhhh--hHHHHHHHHhc
Confidence 378888988544 5678888 6677664 56888 88987654 48888887653
|
Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown. |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.25 Score=51.74 Aligned_cols=128 Identities=15% Similarity=0.168 Sum_probs=78.5
Q ss_pred chhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH-----HHHhcC----hhhHHHhhhCc
Q psy11859 211 DVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-----AEFSKL----PVFERLRKECP 281 (851)
Q Consensus 211 ~i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl-----~~~~~~----~~f~~l~~~~~ 281 (851)
+.++-+++.+|+|.|++| +|+.++..|.+.| |.+|++++...-..+-..|- .++-.. ..-++|++.+|
T Consensus 20 ~~q~~L~~~~VlIiG~GG-lGs~ia~~La~~G--vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np 96 (231)
T PRK08328 20 EGQEKLKKAKVAVVGVGG-LGSPVAYYLAAAG--VGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNS 96 (231)
T ss_pred HHHHHHhCCcEEEECCCH-HHHHHHHHHHHcC--CCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCC
Confidence 345667889999998865 7999999999976 58999988765433222221 011000 01123444455
Q ss_pred ccCCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 282 AQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 282 ~~~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
+. +|+.+.+.+++ +....++++.|+||-+.... .. -..+-++|.+.+ ..||+.++
T Consensus 97 ~v--~v~~~~~~~~~-------~~~~~~l~~~D~Vid~~d~~------~~--------r~~l~~~~~~~~--ip~i~g~~ 151 (231)
T PRK08328 97 DI--KIETFVGRLSE-------ENIDEVLKGVDVIVDCLDNF------ET--------RYLLDDYAHKKG--IPLVHGAV 151 (231)
T ss_pred CC--EEEEEeccCCH-------HHHHHHHhcCCEEEECCCCH------HH--------HHHHHHHHHHcC--CCEEEEee
Confidence 43 56666666543 35566788999999887542 11 112345777765 56888777
Q ss_pred eeeeC
Q psy11859 362 AFCHP 366 (851)
Q Consensus 362 a~~~~ 366 (851)
...+|
T Consensus 152 ~g~~G 156 (231)
T PRK08328 152 EGTYG 156 (231)
T ss_pred ccCEE
Confidence 64444
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.18 Score=52.73 Aligned_cols=123 Identities=18% Similarity=0.171 Sum_probs=76.6
Q ss_pred hhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH-----HHHh---cChhhHHHhhhCccc
Q psy11859 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-----AEFS---KLPVFERLRKECPAQ 283 (851)
Q Consensus 212 i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl-----~~~~---~~~~f~~l~~~~~~~ 283 (851)
.++-+++++|+|-|+ |-+|+++++.|.+.| |.++.+++...-..+...|. .++- ....-++|++.+|+.
T Consensus 15 ~q~~L~~~~VlivG~-GglGs~va~~La~~G--vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~ 91 (228)
T cd00757 15 GQEKLKNARVLVVGA-GGLGSPAAEYLAAAG--VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDV 91 (228)
T ss_pred HHHHHhCCcEEEECC-CHHHHHHHHHHHHcC--CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCC
Confidence 456678899999985 569999999999986 58888887654222211111 0111 112233445555543
Q ss_pred CCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeee
Q psy11859 284 LSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTA 362 (851)
Q Consensus 284 ~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa 362 (851)
+++.+..+++. +....+++++|+||-++... . .-..+-++|.+.+ ..+|+.++.
T Consensus 92 --~i~~~~~~i~~-------~~~~~~~~~~DvVi~~~d~~------~--------~r~~l~~~~~~~~--ip~i~~g~~ 145 (228)
T cd00757 92 --EIEAYNERLDA-------ENAEELIAGYDLVLDCTDNF------A--------TRYLINDACVKLG--KPLVSGAVL 145 (228)
T ss_pred --EEEEecceeCH-------HHHHHHHhCCCEEEEcCCCH------H--------HHHHHHHHHHHcC--CCEEEEEec
Confidence 56667666642 35667788999999987542 1 1123557787765 577887764
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.28 Score=50.63 Aligned_cols=129 Identities=15% Similarity=0.126 Sum_probs=78.1
Q ss_pred chhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH----HHHhc---ChhhHHHhhhCccc
Q psy11859 211 DVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL----AEFSK---LPVFERLRKECPAQ 283 (851)
Q Consensus 211 ~i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl----~~~~~---~~~f~~l~~~~~~~ 283 (851)
+.++-++..+|+|.|+ |-+|+.++..|.+.| |.+|.+++...-..+...|. .++-. ...-++|++.+|+.
T Consensus 21 ~~q~~L~~~~V~ViG~-GglGs~ia~~La~~G--vg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v 97 (212)
T PRK08644 21 KLLEKLKKAKVGIAGA-GGLGSNIAVALARSG--VGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFV 97 (212)
T ss_pred HHHHHHhCCCEEEECc-CHHHHHHHHHHHHcC--CCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCC
Confidence 4566788899999996 779999999999976 57899988873222111111 00000 11223344444543
Q ss_pred CCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEeeee
Q psy11859 284 LSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKM-KKLVAFIHFSTA 362 (851)
Q Consensus 284 ~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~vSTa 362 (851)
+++.+...+++. ....+++++|+||-+.-. + .....+.+.|.+. + ..||+.|..
T Consensus 98 --~v~~~~~~i~~~-------~~~~~~~~~DvVI~a~D~------~--------~~r~~l~~~~~~~~~--~p~I~~~~~ 152 (212)
T PRK08644 98 --EIEAHNEKIDED-------NIEELFKDCDIVVEAFDN------A--------ETKAMLVETVLEHPG--KKLVAASGM 152 (212)
T ss_pred --EEEEEeeecCHH-------HHHHHHcCCCEEEECCCC------H--------HHHHHHHHHHHHhCC--CCEEEeehh
Confidence 666776666543 456678899999998421 1 1223455667665 4 567777655
Q ss_pred eeeCC
Q psy11859 363 FCHPD 367 (851)
Q Consensus 363 ~~~~~ 367 (851)
..++.
T Consensus 153 ~~~~~ 157 (212)
T PRK08644 153 AGYGD 157 (212)
T ss_pred hccCC
Confidence 44443
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.53 Score=51.50 Aligned_cols=115 Identities=14% Similarity=0.131 Sum_probs=76.3
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCccc-CCCeEEEEcCCCCCc
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQ-LSRLHIIEGDILQAN 298 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~-~~~v~~v~gDi~~~~ 298 (851)
+|.|.|| |.||+.++..|+..+ -+.++.+++..+.... ....++.... +-. ..++.+..+|.
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~-~~~elvL~Di~~~~a~--g~a~DL~~~~---------~~~~~~~~~i~~~~y---- 63 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALG-LFSEIVLIDVNEGVAE--GEALDFHHAT---------ALTYSTNTKIRAGDY---- 63 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeCCcchhh--HHHHHHHhhh---------ccCCCCCEEEEECCH----
Confidence 4788998 999999999998763 4578999998654321 1112221110 101 11344444442
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcc-hh--HHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLE-AE--LKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~-~~--~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
..++++|+||=+|+..+-+ .+ -.+.+..|+.-.+.+.....+.+ ...++.+-|
T Consensus 64 ---------~~~~~aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvs 119 (307)
T cd05290 64 ---------DDCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILIT 119 (307)
T ss_pred ---------HHhCCCCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEec
Confidence 2457899999999976543 33 36889999999999999998886 566666665
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.48 Score=51.85 Aligned_cols=113 Identities=19% Similarity=0.116 Sum_probs=74.5
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEE--EcCCCCC
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHII--EGDILQA 297 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v--~gDi~~~ 297 (851)
+|.|+||+|.||+.++-.|+.. +-+.++.++++.+ .. .. ..++.. ......+. .+|
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~-~~~~elvL~Di~~-a~-g~--a~DL~~-------------~~~~~~i~~~~~~---- 58 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ-PYVSELSLYDIAG-AA-GV--AADLSH-------------IPTAASVKGFSGE---- 58 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC-CCCcEEEEecCCC-Cc-EE--Echhhc-------------CCcCceEEEecCC----
Confidence 4899999999999999988776 4457899998866 21 00 001100 00111111 111
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
+ ++...++++|+||=+|+..+-+ .+..+.+..|+.-.+.+.+...+.. ...++.+=|
T Consensus 59 ~------~~~~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvs 116 (312)
T TIGR01772 59 E------GLENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVIT 116 (312)
T ss_pred C------chHHHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEec
Confidence 1 2345678999999999986543 4566889999999999998888775 555555554
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.25 Score=55.29 Aligned_cols=123 Identities=15% Similarity=0.145 Sum_probs=78.8
Q ss_pred hhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH-----HHHh---cChhhHHHhhhCccc
Q psy11859 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-----AEFS---KLPVFERLRKECPAQ 283 (851)
Q Consensus 212 i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl-----~~~~---~~~~f~~l~~~~~~~ 283 (851)
-++-+++.+|+|.|+ |=+|+.++..|.+.| |.+|.+++...-..+-..|. .++- ....-++|++.+|+.
T Consensus 22 ~q~~L~~~~VlivG~-GGlGs~~a~~La~~G--vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v 98 (355)
T PRK05597 22 GQQSLFDAKVAVIGA-GGLGSPALLYLAGAG--VGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDV 98 (355)
T ss_pred HHHHHhCCeEEEECC-CHHHHHHHHHHHHcC--CCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCc
Confidence 455678899999998 668999999999876 68999988865332222211 0111 112234566666655
Q ss_pred CCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeee
Q psy11859 284 LSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTA 362 (851)
Q Consensus 284 ~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa 362 (851)
+|+.+...++.. ....+++++|+||-+.... . .-.-+-++|.+.+ ..||+.++.
T Consensus 99 --~v~~~~~~i~~~-------~~~~~~~~~DvVvd~~d~~------~--------~r~~~n~~c~~~~--ip~v~~~~~ 152 (355)
T PRK05597 99 --KVTVSVRRLTWS-------NALDELRDADVILDGSDNF------D--------TRHLASWAAARLG--IPHVWASIL 152 (355)
T ss_pred --EEEEEEeecCHH-------HHHHHHhCCCEEEECCCCH------H--------HHHHHHHHHHHcC--CCEEEEEEe
Confidence 677777776643 4556778999999988531 1 1122446777765 568888764
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.64 Score=50.95 Aligned_cols=116 Identities=11% Similarity=0.126 Sum_probs=73.6
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
++|.|.|+ |.+|+.++..|+..+. ..+|.+++|........ ..++.+ ........+....+|
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~-~~ei~l~D~~~~~~~~~--a~dL~~---------~~~~~~~~~~i~~~~----- 62 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGI-ADELVLIDINEEKAEGE--ALDLED---------ALAFLPSPVKIKAGD----- 62 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCcchhhHh--HhhHHH---------HhhccCCCeEEEcCC-----
Confidence 47899996 8999999999998763 24899999965432111 111110 000001122222211
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
.+ .+.++|+||.+|+...-+ .+-.+.++.|+.-.+.+.+...+.. .+.+|.+=|
T Consensus 63 -------~~-~l~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvs 117 (306)
T cd05291 63 -------YS-DCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVAS 117 (306)
T ss_pred -------HH-HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEec
Confidence 22 247999999999976443 3556889999999999999998875 455555444
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=93.77 E-value=1.1 Score=47.78 Aligned_cols=116 Identities=15% Similarity=0.050 Sum_probs=73.4
Q ss_pred EEEecCccHHHHHHHHHHHHhCC-CccEEEEEecCCCCCCHH-HHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 221 VLVTGGTGFMGKVLLEKLLRSCP-DIGKVYILCRAKRGLTPK-ARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 221 VlVTGatGFIG~~Lv~~Ll~~g~-~v~~V~~l~R~~~~~~~~-~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|.|.||+|.+|..++..|+..+. .+.+|.++++.+...... ..++++. ... ....+... .
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~------------~~~-~~~~i~~~-----~ 62 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAV------------EPL-ADIKVSIT-----D 62 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhh------------hhc-cCcEEEEC-----C
Confidence 57999999999999999987641 346899999876432221 1111110 000 11111111 1
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
++...++++|+||-+|+..+.. ....+....|+.-.+.+++...+.. ...++.+-|
T Consensus 63 ------d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~t 119 (263)
T cd00650 63 ------DPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVS 119 (263)
T ss_pred ------chHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 3345678999999999876554 3345678889999999999998774 444444434
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.23 Score=60.21 Aligned_cols=126 Identities=11% Similarity=0.121 Sum_probs=81.1
Q ss_pred cchhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHH----HHhc---ChhhHHHhhhCcc
Q psy11859 210 GDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLA----EFSK---LPVFERLRKECPA 282 (851)
Q Consensus 210 ~~i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~----~~~~---~~~f~~l~~~~~~ 282 (851)
.+-++-+++.+|+|.|+ | +|+.+++.|.+.| -|.++++.+...-..+-..|.. ++-. ...-++|.+.+|.
T Consensus 99 ~~~Q~~L~~~~V~IvG~-G-lGs~~a~~LaraG-vvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~ 175 (722)
T PRK07877 99 AEEQERLGRLRIGVVGL-S-VGHAIAHTLAAEG-LCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPY 175 (722)
T ss_pred HHHHHHHhcCCEEEEEe-c-HHHHHHHHHHHcc-CCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCC
Confidence 34567789999999999 8 9999999999986 1268888887654444444431 1100 0122234444554
Q ss_pred cCCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeee
Q psy11859 283 QLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTA 362 (851)
Q Consensus 283 ~~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa 362 (851)
. +|+.+...++. +.+..+++++|+|+-+.-. +..=..|-++|.+.+ ..+|+.|++
T Consensus 176 i--~v~~~~~~i~~-------~n~~~~l~~~DlVvD~~D~--------------~~~R~~ln~~a~~~~--iP~i~~~~~ 230 (722)
T PRK07877 176 L--PVEVFTDGLTE-------DNVDAFLDGLDVVVEECDS--------------LDVKVLLREAARARR--IPVLMATSD 230 (722)
T ss_pred C--EEEEEeccCCH-------HHHHHHhcCCCEEEECCCC--------------HHHHHHHHHHHHHcC--CCEEEEcCC
Confidence 4 77777777773 3678888999999998742 111123446777765 457777754
Q ss_pred e
Q psy11859 363 F 363 (851)
Q Consensus 363 ~ 363 (851)
.
T Consensus 231 ~ 231 (722)
T PRK07877 231 R 231 (722)
T ss_pred C
Confidence 3
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.23 Score=47.29 Aligned_cols=80 Identities=23% Similarity=0.209 Sum_probs=53.0
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
-+++++|+|-|| |-+|+.++..|...|. .+|+++.|.. +|.+++. +..+ ...+.++..
T Consensus 9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~--~~i~i~nRt~------~ra~~l~---------~~~~--~~~~~~~~~-- 66 (135)
T PF01488_consen 9 DLKGKRVLVIGA-GGAARAVAAALAALGA--KEITIVNRTP------ERAEALA---------EEFG--GVNIEAIPL-- 66 (135)
T ss_dssp TGTTSEEEEESS-SHHHHHHHHHHHHTTS--SEEEEEESSH------HHHHHHH---------HHHT--GCSEEEEEG--
T ss_pred CcCCCEEEEECC-HHHHHHHHHHHHHcCC--CEEEEEECCH------HHHHHHH---------HHcC--ccccceeeH--
Confidence 368999999998 5599999999999874 7899999964 2332221 1110 113444433
Q ss_pred CCCcCCCCHHHHHHHhcCccEEEEccccCCc
Q psy11859 295 LQANLGIKDSDLLMLQEEVSVVFNGAASLKL 325 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~ 325 (851)
. ++.....++|+||++.+....
T Consensus 67 ~---------~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 67 E---------DLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp G---------GHCHHHHTESEEEE-SSTTST
T ss_pred H---------HHHHHHhhCCeEEEecCCCCc
Confidence 2 444667889999999876543
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK04860 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.041 Score=53.81 Aligned_cols=37 Identities=22% Similarity=0.582 Sum_probs=21.5
Q ss_pred cccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccC
Q psy11859 719 TFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSR 763 (851)
Q Consensus 719 ~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~ 763 (851)
+|.| . |++ ...++.+|.++|+++++|.|. .|+..|..
T Consensus 119 ~Y~C--~-C~~---~~~~~rrH~ri~~g~~~YrC~--~C~~~l~~ 155 (160)
T PRK04860 119 PYRC--K-CQE---HQLTVRRHNRVVRGEAVYRCR--RCGETLVF 155 (160)
T ss_pred EEEc--C-CCC---eeCHHHHHHHHhcCCccEECC--CCCceeEE
Confidence 5666 3 655 445566666666666666665 56655543
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.29 Score=55.50 Aligned_cols=124 Identities=18% Similarity=0.152 Sum_probs=79.8
Q ss_pred hhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHH--H---HHHh---cChhhHHHhhhCccc
Q psy11859 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKAR--L---AEFS---KLPVFERLRKECPAQ 283 (851)
Q Consensus 212 i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~r--l---~~~~---~~~~f~~l~~~~~~~ 283 (851)
-++-++..+|+|.|++| +|+.++..|.+.| |.+|.+++...-..+-..| + .++- ....-++|++.+|..
T Consensus 32 ~q~~L~~~~VlivG~GG-lG~~va~~La~~G--vg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v 108 (390)
T PRK07411 32 GQKRLKAASVLCIGTGG-LGSPLLLYLAAAG--IGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYC 108 (390)
T ss_pred HHHHHhcCcEEEECCCH-HHHHHHHHHHHcC--CCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCC
Confidence 45667889999998876 8999999999976 6889888876433322222 0 1111 112344566666654
Q ss_pred CCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeee
Q psy11859 284 LSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAF 363 (851)
Q Consensus 284 ~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~ 363 (851)
+|+.+...++.. ....++.++|+||-+.... ..- ..|-++|.+.+ +.+|+.+...
T Consensus 109 --~v~~~~~~~~~~-------~~~~~~~~~D~Vvd~~d~~------~~r--------~~ln~~~~~~~--~p~v~~~~~g 163 (390)
T PRK07411 109 --QVDLYETRLSSE-------NALDILAPYDVVVDGTDNF------PTR--------YLVNDACVLLN--KPNVYGSIFR 163 (390)
T ss_pred --eEEEEecccCHH-------hHHHHHhCCCEEEECCCCH------HHH--------HHHHHHHHHcC--CCEEEEEEcc
Confidence 788888777754 4456678999999987532 111 12336676664 5688877753
|
|
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=93.67 E-value=1.3 Score=51.24 Aligned_cols=90 Identities=20% Similarity=0.260 Sum_probs=61.6
Q ss_pred hcCCCEEEEecCc-cHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 215 WYAGRSVLVTGGT-GFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 215 ~~~~k~VlVTGat-GFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
-|.++..|||||+ |.||..++++||..| .+|++..-.- .++|. ..|+.|-..+...-..+-+|..+
T Consensus 393 ~y~d~valVTGA~~gSIaa~Vv~~LL~gG---AtVI~TTS~~----s~~r~------efyr~LYa~~a~~ga~LwvVpaN 459 (866)
T COG4982 393 TYGDKVALVTGASKGSIAAAVVARLLAGG---ATVIATTSRL----SEERT------EFYRSLYARHARYGAALWVVPAN 459 (866)
T ss_pred CcccceEEEecCCCcchHHHHHHHHHhCC---cEEEEEcccc----cHHHH------HHHHHHHHhhCCCCceEEEEecc
Confidence 4789999999975 999999999999988 6666643221 23333 24445555555555678888888
Q ss_pred CCCCcCCCCHHHHHHHhc---------------------CccEEEEccccC
Q psy11859 294 ILQANLGIKDSDLLMLQE---------------------EVSVVFNGAASL 323 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~---------------------~vd~ViH~AA~~ 323 (851)
..... |++.+++ .+|.+|-+||.-
T Consensus 460 ~~Sys------DVdAlIewIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~ 504 (866)
T COG4982 460 MGSYS------DVDALIEWIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPR 504 (866)
T ss_pred ccchh------hHHHHHHHhccccccccCCcceecccccCcceeeecccCC
Confidence 77654 5555532 357888888863
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.67 Score=53.62 Aligned_cols=36 Identities=22% Similarity=0.190 Sum_probs=31.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK 255 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~ 255 (851)
+++++|+|||++| +|...++.|++.| .+|.+.++..
T Consensus 3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G---~~V~~~d~~~ 38 (447)
T PRK02472 3 YQNKKVLVLGLAK-SGYAAAKLLHKLG---ANVTVNDGKP 38 (447)
T ss_pred cCCCEEEEEeeCH-HHHHHHHHHHHCC---CEEEEEcCCC
Confidence 4689999999999 9999999999998 6888887654
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.77 Score=44.04 Aligned_cols=116 Identities=19% Similarity=0.216 Sum_probs=70.5
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH-----HHHh---cChhhHHHhhhCcccCCCeEEEE
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-----AEFS---KLPVFERLRKECPAQLSRLHIIE 291 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl-----~~~~---~~~~f~~l~~~~~~~~~~v~~v~ 291 (851)
+|+|.|+ |=+|+.++..|++.| +.++.+++...-..+...|. .++- ....-+.+++..|.. +++.+.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~G--v~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v--~i~~~~ 75 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSG--VGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGV--NVTAVP 75 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCC--CCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCc--EEEEEe
Confidence 4889997 889999999999976 47888888664222111111 0000 011223344444433 566666
Q ss_pred cCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeee
Q psy11859 292 GDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAF 363 (851)
Q Consensus 292 gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~ 363 (851)
.++... .....+.+.|+||-+.... .....+.++|++.+ ..||.+++..
T Consensus 76 ~~~~~~-------~~~~~~~~~diVi~~~d~~--------------~~~~~l~~~~~~~~--i~~i~~~~~g 124 (143)
T cd01483 76 EGISED-------NLDDFLDGVDLVIDAIDNI--------------AVRRALNRACKELG--IPVIDAGGLG 124 (143)
T ss_pred eecChh-------hHHHHhcCCCEEEECCCCH--------------HHHHHHHHHHHHcC--CCEEEEcCCC
Confidence 666543 2356678999999988641 12244667888775 5677777753
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.055 Score=34.37 Aligned_cols=23 Identities=48% Similarity=0.944 Sum_probs=12.0
Q ss_pred ccccCCccCccccChhhHHHHHhhh
Q psy11859 720 FQCTYPECLKFYAKMSHLKAHLRRH 744 (851)
Q Consensus 720 ~~C~~~~Cgk~F~~~~~L~~H~~~H 744 (851)
|+| +.|++.|.+...|..|++.|
T Consensus 1 ~~C--~~C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQC--PICGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE---SSTS-EESSHHHHHHHHHHH
T ss_pred CCC--cCCCCcCCcHHHHHHHHHhh
Confidence 345 55666666666666665544
|
... |
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.62 Score=51.88 Aligned_cols=125 Identities=10% Similarity=0.131 Sum_probs=73.7
Q ss_pred chhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH------HHHhc-ChhhHHHhhhCccc
Q psy11859 211 DVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL------AEFSK-LPVFERLRKECPAQ 283 (851)
Q Consensus 211 ~i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl------~~~~~-~~~f~~l~~~~~~~ 283 (851)
.+++-+++.+|+|.|++| +|+++++.|.+.| |.+|.+++-..-..+-..|. .++-. .+--+-+++.....
T Consensus 169 ~~q~kL~~~~VaIVG~GG-~GS~Va~~LAR~G--VgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~i 245 (393)
T PRK06153 169 ALSAKLEGQRIAIIGLGG-TGSYILDLVAKTP--VREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNM 245 (393)
T ss_pred HHHHHHhhCcEEEEcCCc-cHHHHHHHHHHcC--CCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHh
Confidence 357788999999999877 7999999999986 68998888653222222221 11111 01111122222222
Q ss_pred CCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeee
Q psy11859 284 LSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTA 362 (851)
Q Consensus 284 ~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa 362 (851)
..+++.+...+. + +.+. .+.++|+||=|.- |..+-..|.++|.+.+ ..||.++-.
T Consensus 246 n~~I~~~~~~I~-~------~n~~-~L~~~DiV~dcvD--------------n~~aR~~ln~~a~~~g--IP~Id~G~~ 300 (393)
T PRK06153 246 RRGIVPHPEYID-E------DNVD-ELDGFTFVFVCVD--------------KGSSRKLIVDYLEALG--IPFIDVGMG 300 (393)
T ss_pred CCeEEEEeecCC-H------HHHH-HhcCCCEEEEcCC--------------CHHHHHHHHHHHHHcC--CCEEEeeec
Confidence 336777766663 2 2333 4689999999875 2233344566776664 346776653
|
|
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.7 Score=52.77 Aligned_cols=128 Identities=16% Similarity=0.105 Sum_probs=76.8
Q ss_pred hhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHH--------HHHHhcChhhHHHhhhCcccC
Q psy11859 213 ARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKAR--------LAEFSKLPVFERLRKECPAQL 284 (851)
Q Consensus 213 ~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~r--------l~~~~~~~~f~~l~~~~~~~~ 284 (851)
++-+...+|+|.|++| +|+.++..|+.. +|..+.+++...-..+...+ +.+-....+-+.|.+.+|+.
T Consensus 15 Q~~L~~s~VlliG~gg-lGsEilKNLvL~--GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V- 90 (425)
T cd01493 15 QAALESAHVCLLNATA-TGTEILKNLVLP--GIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDV- 90 (425)
T ss_pred HHHHhhCeEEEEcCcH-HHHHHHHHHHHc--CCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCC-
Confidence 4456778999999988 999999999975 57899998865422111100 00001112344566667765
Q ss_pred CCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeee
Q psy11859 285 SRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFC 364 (851)
Q Consensus 285 ~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~ 364 (851)
+++++..++.+.. ......+.+.|+||= +.. +... ...|.++|.+.+ ..||+++|...
T Consensus 91 -~i~~~~e~~~~ll-----~~~~~f~~~fdiVI~--t~~----~~~~--------~~~L~~~c~~~~--iPlI~~~s~G~ 148 (425)
T cd01493 91 -NGSAVEESPEALL-----DNDPSFFSQFTVVIA--TNL----PEST--------LLRLADVLWSAN--IPLLYVRSYGL 148 (425)
T ss_pred -EEEEEecccchhh-----hhHHHHhcCCCEEEE--CCC----CHHH--------HHHHHHHHHHcC--CCEEEEecccC
Confidence 6677776665321 122455778899983 221 1111 123557787764 57888888655
Q ss_pred eC
Q psy11859 365 HP 366 (851)
Q Consensus 365 ~~ 366 (851)
+|
T Consensus 149 ~G 150 (425)
T cd01493 149 YG 150 (425)
T ss_pred EE
Confidence 44
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.45 Score=53.46 Aligned_cols=123 Identities=17% Similarity=0.236 Sum_probs=77.5
Q ss_pred hhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH-----HHH---hcChhhHHHhhhCccc
Q psy11859 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-----AEF---SKLPVFERLRKECPAQ 283 (851)
Q Consensus 212 i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl-----~~~---~~~~~f~~l~~~~~~~ 283 (851)
-++-+++.+|+|.|++| +|+.++..|.+.| |.+|.+++...-..+-..|. .++ .....-++|++.+|+.
T Consensus 35 ~q~~l~~~~VliiG~Gg-lG~~v~~~La~~G--vg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v 111 (370)
T PRK05600 35 QQERLHNARVLVIGAGG-LGCPAMQSLASAG--VGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDI 111 (370)
T ss_pred HHHHhcCCcEEEECCCH-HHHHHHHHHHHcC--CCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCC
Confidence 45668889999998865 8999999999976 58899888764322222221 111 0112233455555543
Q ss_pred CCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeee
Q psy11859 284 LSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTA 362 (851)
Q Consensus 284 ~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa 362 (851)
+++.+...++.. ....+++++|+||-+.... . .-..+-++|.+.+ ..||+.+..
T Consensus 112 --~i~~~~~~i~~~-------~~~~~~~~~DlVid~~Dn~------~--------~r~~in~~~~~~~--iP~v~~~~~ 165 (370)
T PRK05600 112 --RVNALRERLTAE-------NAVELLNGVDLVLDGSDSF------A--------TKFLVADAAEITG--TPLVWGTVL 165 (370)
T ss_pred --eeEEeeeecCHH-------HHHHHHhCCCEEEECCCCH------H--------HHHHHHHHHHHcC--CCEEEEEEe
Confidence 677777666533 5567789999999887542 1 1123446677765 468887764
|
|
| >TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.0059 Score=70.47 Aligned_cols=98 Identities=5% Similarity=-0.137 Sum_probs=70.2
Q ss_pred HHHHhhhhcccceeEEecCC-CCCCCCcccccccccccccceecC-C-CCCccccccccccc--chhhhhhhhhhHHHHH
Q psy11859 81 EELALLGVTESNVYLIDIDG-NGRFPPARVKCEFQEDSTKTIVEH-N-LPDQTDVRGIHETD--FKFTIKYREFTQEMLS 155 (851)
Q Consensus 81 ~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~ddd~~~~~~~~-~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 155 (851)
+++++|+|. +|..+ .++. .++...++++|++|+|.+...+.+ . .|+..++.+.++++ ++++|++|....+++.
T Consensus 126 rvLIIGag~-~~~~L-~~l~~~~~~~g~~vVGfi~~dd~~~~i~gvpVlG~~~dl~~~v~~~~Id~ViIAlp~~~~~~~~ 203 (442)
T TIGR03013 126 RILVLGTGP-RAREI-ARLRRSSDRRGHEIVGFVPLPDEPAYVPSEHVIENGDGLVEYVLRHRIDEIVIALDERRGSLPV 203 (442)
T ss_pred cEEEEECCH-HHHHH-HHHHHhCccCCeEEEEEEcCCccccccCCCcccCCHHHHHHHHHhCCCCEEEEECchhhcchHH
Confidence 488999999 88877 6654 567888999999954322222221 1 56777888888776 5999999977766645
Q ss_pred HhhhhhhhhhhhhcccccCCCCCCC
Q psy11859 156 ELISHSLYCRQRIKYECHQAPLDLH 180 (851)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (851)
+.++.|...++.++..|+..+...+
T Consensus 204 ~~l~~~~~~gv~V~ivP~~~e~~~g 228 (442)
T TIGR03013 204 DELLECKLSGIEVVDAPSFFERETG 228 (442)
T ss_pred HHHHHHHhCCCEEEEcchHHHHhcC
Confidence 5577888888888888877665433
|
Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre |
| >COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.048 Score=57.13 Aligned_cols=71 Identities=11% Similarity=0.152 Sum_probs=50.3
Q ss_pred eccceeecC--Cccccchhhhhhhccc-ccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCc
Q psy11859 688 FFVIFTQIL--PAYLVDFIMVLIRQKT-FENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRS 764 (851)
Q Consensus 688 ~~~~~~c~~--c~~~~~~~~~l~~h~~-~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~ 764 (851)
+++||+|+. |.|.+.....|+.|+. .|...+.+.-.-++--..| -...|||+|+ .|+|+++..
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F------------~~~~KPYrCe--vC~KRYKNl 411 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIF------------SAKDKPYRCE--VCDKRYKNL 411 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccc------------cccCCceecc--ccchhhccC
Confidence 469999987 9999999999999954 6654444433112222222 3456899998 799999888
Q ss_pred hhHHHhhh
Q psy11859 765 DELSRHRR 772 (851)
Q Consensus 765 ~~L~~H~r 772 (851)
..|+.|+.
T Consensus 412 NGLKYHr~ 419 (423)
T COG5189 412 NGLKYHRK 419 (423)
T ss_pred ccceeccc
Confidence 88888864
|
|
| >PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.092 Score=40.00 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=14.8
Q ss_pred CcccccccCCccCccccChhhHHHHHhhhcCCCc
Q psy11859 716 LVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERS 749 (851)
Q Consensus 716 ~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp 749 (851)
.+.|..| |+|+..+.+..+|++|+..+.+.||
T Consensus 21 S~~PatC--P~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 21 SEQPATC--PICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp TS--EE---TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred cCCCCCC--CcchhhccchhhHHHHHHHHhcccC
Confidence 3455666 5666666666666666655544443
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A. |
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.85 Score=49.18 Aligned_cols=121 Identities=15% Similarity=0.147 Sum_probs=75.9
Q ss_pred hhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHH--------HHHHhcChhhHHHhhhCccc
Q psy11859 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKAR--------LAEFSKLPVFERLRKECPAQ 283 (851)
Q Consensus 212 i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~r--------l~~~~~~~~f~~l~~~~~~~ 283 (851)
-+.-++..+|||.|++| ||..++..|...| |..|.+.+...-..+...| +..-......++|++.+|..
T Consensus 13 aq~kL~~s~VLIvG~gG-LG~EiaKnLalaG--Vg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V 89 (286)
T cd01491 13 AMKKLQKSNVLISGLGG-LGVEIAKNLILAG--VKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYV 89 (286)
T ss_pred HHHHHhcCcEEEEcCCH-HHHHHHHHHHHcC--CCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCC
Confidence 34556788999998876 8999999999876 5889888865432211111 11111223455677777754
Q ss_pred CCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeee
Q psy11859 284 LSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAF 363 (851)
Q Consensus 284 ~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~ 363 (851)
+|+.+.+++.+ ..+.+.|+|+-+.. ++..... +-++|++.+ ..||++.|..
T Consensus 90 --~V~~~~~~~~~-----------~~l~~fdvVV~~~~------~~~~~~~--------in~~c~~~~--ipfI~a~~~G 140 (286)
T cd01491 90 --PVTVSTGPLTT-----------DELLKFQVVVLTDA------SLEDQLK--------INEFCHSPG--IKFISADTRG 140 (286)
T ss_pred --EEEEEeccCCH-----------HHHhcCCEEEEecC------CHHHHHH--------HHHHHHHcC--CEEEEEeccc
Confidence 67777766331 24578899988764 2233333 337787765 5788888753
Q ss_pred e
Q psy11859 364 C 364 (851)
Q Consensus 364 ~ 364 (851)
.
T Consensus 141 ~ 141 (286)
T cd01491 141 L 141 (286)
T ss_pred c
Confidence 3
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms [] | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.46 Score=44.71 Aligned_cols=89 Identities=26% Similarity=0.390 Sum_probs=51.9
Q ss_pred EEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHh-------cChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFS-------KLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 221 VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~-------~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
|.|-|+||.||+..++-+-+. |+-.+|+.|.-.++-....+..+++. +...++.|+...+.....++++.|+
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~-~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~ 79 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKH-PDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGP 79 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHC-TTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESH
T ss_pred CEEEcCCcHHHHHHHHHHHhC-CCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeCh
Confidence 678999999999999876654 77788988887554322222222221 2234445555544333455665554
Q ss_pred CCCCcCCCCHHHHHHHhc--CccEEEEcc
Q psy11859 294 ILQANLGIKDSDLLMLQE--EVSVVFNGA 320 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~--~vd~ViH~A 320 (851)
+.+.++.+ ++|+|+.+.
T Consensus 80 ----------~~l~~~~~~~~~D~vv~Ai 98 (129)
T PF02670_consen 80 ----------EGLEELAEEPEVDIVVNAI 98 (129)
T ss_dssp ----------HHHHHHHTHTT-SEEEE--
T ss_pred ----------HHHHHHhcCCCCCEEEEeC
Confidence 24555554 789998754
|
In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A .... |
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.68 Score=50.57 Aligned_cols=120 Identities=20% Similarity=0.227 Sum_probs=74.2
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH-----HHH---hcChhhHHHhhhCcccCCCeEEEE
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-----AEF---SKLPVFERLRKECPAQLSRLHIIE 291 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl-----~~~---~~~~~f~~l~~~~~~~~~~v~~v~ 291 (851)
+|||.|+ |-||.+++..|+..| |..|.+++...-..+-..|. .++ .....-+.|++.+|.. +|+.+.
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~G--vg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v--~V~~~~ 75 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTG--FGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNV--KIVAYH 75 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhc--CCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCC--eEEEEe
Confidence 4899997 779999999999886 58999888754322111110 111 1112234555555554 788888
Q ss_pred cCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeC
Q psy11859 292 GDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHP 366 (851)
Q Consensus 292 gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~ 366 (851)
+++.+.. .....+++.|+|+-+.... ..-..+-++|...+ ..||...|....|
T Consensus 76 ~~i~~~~------~~~~f~~~~DvVv~a~Dn~--------------~ar~~in~~c~~~~--ip~I~~gt~G~~G 128 (312)
T cd01489 76 ANIKDPD------FNVEFFKQFDLVFNALDNL--------------AARRHVNKMCLAAD--VPLIESGTTGFLG 128 (312)
T ss_pred ccCCCcc------chHHHHhcCCEEEECCCCH--------------HHHHHHHHHHHHCC--CCEEEEecCccee
Confidence 8888653 2234568899999876432 12233456777664 5688877754333
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=92.47 E-value=1.6 Score=48.01 Aligned_cols=115 Identities=16% Similarity=0.102 Sum_probs=73.9
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEE-cCCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIE-GDILQA 297 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~-gDi~~~ 297 (851)
++|.|+|| |.||+.++-.|+..+ -+.+|.++++.+... .....++.... + +.....+.. +|
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~-~~~el~LiD~~~~~~--~g~a~Dl~~~~---------~-~~~~~~v~~~~d---- 65 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKG-LADELVLVDVVEDKL--KGEAMDLQHGS---------A-FLKNPKIEADKD---- 65 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeCCccHH--HHHHHHHHHhh---------c-cCCCCEEEECCC----
Confidence 58999996 999999999888764 457899998876422 11111221111 1 111112222 22
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
++. ++++|+||-+|+...- ..+-.+.+..|+.-.+.+.+...+.. .+.++.+=|
T Consensus 66 --------y~~-~~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvs 120 (312)
T cd05293 66 --------YSV-TANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYS-PNAILLVVS 120 (312)
T ss_pred --------HHH-hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEcc
Confidence 232 5899999999997654 34556789999999999999998875 444444433
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.058 Score=41.09 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=24.6
Q ss_pred hcCCCccccCccccCccccCchhHHHhhhhcCCCCC
Q psy11859 744 HSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779 (851)
Q Consensus 744 H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp 779 (851)
+..+.|..|+ .|+..+.++.+|++|+..+++.||
T Consensus 19 ~~S~~PatCP--~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 19 SQSEQPATCP--ICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp CTTS--EE-T--TT--EESSHHHHHHHHHHHTTTS-
T ss_pred hccCCCCCCC--cchhhccchhhHHHHHHHHhcccC
Confidence 3457899998 999999999999999998888876
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A. |
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.39 Score=55.33 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=50.6
Q ss_pred cCCCEEEEecC----------------ccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhh
Q psy11859 216 YAGRSVLVTGG----------------TGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKE 279 (851)
Q Consensus 216 ~~~k~VlVTGa----------------tGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~ 279 (851)
++|++||||+| ||-+|..|++.+...| ..|+++.-+..-
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~G---A~VtlI~Gp~~~---------------------- 308 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAG---AEVTLISGPVDL---------------------- 308 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCC---CcEEEEeCCcCC----------------------
Confidence 79999999986 7999999999999999 566666432210
Q ss_pred CcccCCCeEEEEcCCCCCcCCCCHHHHHHHhc---CccEEEEccccCCcc
Q psy11859 280 CPAQLSRLHIIEGDILQANLGIKDSDLLMLQE---EVSVVFNGAASLKLE 326 (851)
Q Consensus 280 ~~~~~~~v~~v~gDi~~~~lgls~~~~~~~~~---~vd~ViH~AA~~~~~ 326 (851)
.....++++..+=. .++...+. ..|++||+||..+|.
T Consensus 309 --~~p~~v~~i~V~ta--------~eM~~av~~~~~~Di~I~aAAVaDyr 348 (475)
T PRK13982 309 --ADPQGVKVIHVESA--------RQMLAAVEAALPADIAIFAAAVADWR 348 (475)
T ss_pred --CCCCCceEEEecCH--------HHHHHHHHhhCCCCEEEEecccccee
Confidence 01124555543322 23333332 379999999998775
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.66 Score=51.57 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=28.6
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEec
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCR 253 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R 253 (851)
+..+|.|.||||++|..|++.|.++++-+..+..+..
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las 42 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLAS 42 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEc
Confidence 3468999999999999999999886543456665543
|
|
| >PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.077 Score=47.23 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=21.1
Q ss_pred eecCCccccchhhhhhhccc-ccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhh
Q psy11859 693 TQILPAYLVDFIMVLIRQKT-FENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHR 771 (851)
Q Consensus 693 ~c~~c~~~~~~~~~l~~h~~-~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~ 771 (851)
.|..|+..|++...|..|+. .|.-.-+ ....+.....+..+.+... ..++.|. .|++.|.+...|..|+
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~-------~~~~l~~~~~~~~~~~~~~-~~~~~C~--~C~~~f~s~~~l~~Hm 70 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIP-------DQKYLVDPNRLLNYLRKKV-KESFRCP--YCNKTFRSREALQEHM 70 (100)
T ss_dssp --------------------------------------------------------SSEEBS--SSS-EESSHHHHHHHH
T ss_pred Cccccccccccccccccccccccccccc-------ccccccccccccccccccc-CCCCCCC--ccCCCCcCHHHHHHHH
Confidence 48999999999999999975 4432222 1112223344444433222 2368998 8999999999999999
Q ss_pred hhc
Q psy11859 772 RSH 774 (851)
Q Consensus 772 r~H 774 (851)
+.+
T Consensus 71 ~~~ 73 (100)
T PF12756_consen 71 RSK 73 (100)
T ss_dssp HHT
T ss_pred cCc
Confidence 865
|
|
| >PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.078 Score=33.64 Aligned_cols=24 Identities=38% Similarity=0.765 Sum_probs=19.4
Q ss_pred cccCccccCccccCchhHHHhhhhcC
Q psy11859 750 FKCDWQDCKWQFSRSDELSRHRRSHF 775 (851)
Q Consensus 750 ~~C~~~~C~k~F~~~~~L~~H~r~H~ 775 (851)
|.|+ .|++.|.+...|..|++.|+
T Consensus 1 ~~C~--~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCP--ICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-S--STS-EESSHHHHHHHHHHHS
T ss_pred CCCc--CCCCcCCcHHHHHHHHHhhC
Confidence 6798 89999999999999998763
|
... |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.21 Score=57.82 Aligned_cols=72 Identities=15% Similarity=0.240 Sum_probs=52.2
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|+|.|+ |.+|..+++.|.+.| ..|.++++.... .+.+ ++ ...+.++.||.+++.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g---~~v~vid~~~~~------~~~~---------~~-----~~~~~~~~gd~~~~~ 56 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGEN---NDVTVIDTDEER------LRRL---------QD-----RLDVRTVVGNGSSPD 56 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC---CcEEEEECCHHH------HHHH---------Hh-----hcCEEEEEeCCCCHH
Confidence 57999998 999999999999887 577788775421 1111 10 025788999998765
Q ss_pred CCCCHHHHHHH-hcCccEEEEcc
Q psy11859 299 LGIKDSDLLML-QEEVSVVFNGA 320 (851)
Q Consensus 299 lgls~~~~~~~-~~~vd~ViH~A 320 (851)
.+..+ ++++|+||=+.
T Consensus 57 ------~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 57 ------VLREAGAEDADLLIAVT 73 (453)
T ss_pred ------HHHHcCCCcCCEEEEec
Confidence 66666 67899887654
|
|
| >smart00355 ZnF_C2H2 zinc finger | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.13 Score=33.10 Aligned_cols=20 Identities=50% Similarity=0.881 Sum_probs=11.9
Q ss_pred CccCccccChhhHHHHHhhh
Q psy11859 725 PECLKFYAKMSHLKAHLRRH 744 (851)
Q Consensus 725 ~~Cgk~F~~~~~L~~H~~~H 744 (851)
+.|+++|...+.|..|++.|
T Consensus 4 ~~C~~~f~~~~~l~~H~~~H 23 (26)
T smart00355 4 PECGKVFKSKSALKEHMRTH 23 (26)
T ss_pred CCCcchhCCHHHHHHHHHHh
Confidence 55666666666666665544
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.47 Score=47.03 Aligned_cols=36 Identities=31% Similarity=0.439 Sum_probs=31.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRA 254 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~ 254 (851)
+.|++|+|.|+++.+|..++..|.+.| .+|++..|.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g---~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRN---ATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCC---CEEEEEECC
Confidence 689999999998899999999999987 468877764
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >KOG4022|consensus | Back alignment and domain information |
|---|
Probab=91.81 E-value=5.4 Score=38.63 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=26.6
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEE
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYI 250 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~ 250 (851)
..+|+|-||-|-+|+..++.+-.++.-|..|.+
T Consensus 3 agrVivYGGkGALGSacv~~FkannywV~siDl 35 (236)
T KOG4022|consen 3 AGRVIVYGGKGALGSACVEFFKANNYWVLSIDL 35 (236)
T ss_pred CceEEEEcCcchHhHHHHHHHHhcCeEEEEEee
Confidence 357999999999999999999998854444444
|
|
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=91.77 E-value=1.1 Score=56.79 Aligned_cols=121 Identities=15% Similarity=0.084 Sum_probs=75.9
Q ss_pred hhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHH--------HHHHHHhcChhhHHHhhhCcccC
Q psy11859 213 ARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPK--------ARLAEFSKLPVFERLRKECPAQL 284 (851)
Q Consensus 213 ~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~--------~rl~~~~~~~~f~~l~~~~~~~~ 284 (851)
+.-++..+|||.|++| ||..++..|...| |..|.+++...-..+.. +.+........-++|++.+|..
T Consensus 19 q~kL~~s~VLIiG~gG-LG~EiaKnL~laG--Vg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~V- 94 (1008)
T TIGR01408 19 MQKMAKSNVLISGMGG-LGLEIAKNLVLAG--VKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPYV- 94 (1008)
T ss_pred HHHHhhCcEEEECCCH-HHHHHHHHHHHcC--CCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCCc-
Confidence 3456778999999977 9999999999876 58999888654221110 1111111122345566666654
Q ss_pred CCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeee
Q psy11859 285 SRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAF 363 (851)
Q Consensus 285 ~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~ 363 (851)
+|+++.++++ ...+++.|+|+-+-. ++...+. +-++|++.+....||+.++..
T Consensus 95 -~V~~~~~~l~-----------~e~l~~fdvVV~t~~------~~~~~~~--------in~~cr~~~~~I~fI~~~~~G 147 (1008)
T TIGR01408 95 -HVSSSSVPFN-----------EEFLDKFQCVVLTEM------SLPLQKE--------INDFCHSQCPPIAFISADVRG 147 (1008)
T ss_pred -eEEEecccCC-----------HHHHcCCCEEEECCC------CHHHHHH--------HHHHHHHcCCCeEEEEEeecc
Confidence 5777766664 125678999998532 2333333 447888875345788887753
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.64 E-value=1.8 Score=47.64 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=72.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
.+.++|.|.|| |.+|+.+...|+..+ +..|.++++.+....... + ++... .+.......+ .+
T Consensus 3 ~~~~KI~IIGa-G~vG~~ia~~l~~~~--~~~l~L~Di~~~~~~g~~-l-Dl~~~---------~~~~~~~~~i-~~--- 64 (319)
T PTZ00117 3 VKRKKISMIGA-GQIGSTVALLILQKN--LGDVVLYDVIKGVPQGKA-L-DLKHF---------STLVGSNINI-LG--- 64 (319)
T ss_pred CCCcEEEEECC-CHHHHHHHHHHHHCC--CCeEEEEECCCccchhHH-H-HHhhh---------ccccCCCeEE-Ee---
Confidence 35679999997 999999988877764 357889988764432111 1 11000 0000001111 11
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceE-EEEee
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVA-FIHFS 360 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~-fV~vS 360 (851)
.. +++ .+.++|+||-+|+.... ..+..+.+..|..-.+.+++...+.. .+. ++.+|
T Consensus 65 -~~------d~~-~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvs 122 (319)
T PTZ00117 65 -TN------NYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVT 122 (319)
T ss_pred -CC------CHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 11 344 55899999999987553 34456778889988888888887764 444 44443
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=91.58 E-value=1.6 Score=43.61 Aligned_cols=90 Identities=20% Similarity=0.204 Sum_probs=56.1
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH----HHHh---cChhhHHHhhhCcccCCCeEEEEc
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL----AEFS---KLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl----~~~~---~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
+|+|.|+ |-+|+.++..|.+.| |.+|.+++...-..+...|- .++- ....-.+|.+.+|.. +++.+..
T Consensus 1 ~VlViG~-GglGs~ia~~La~~G--vg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v--~i~~~~~ 75 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSG--VGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFV--KIEAINI 75 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcC--CCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCC--EEEEEEe
Confidence 4888886 779999999999876 57899998875221111111 0110 111233444445543 5777766
Q ss_pred CCCCCcCCCCHHHHHHHhcCccEEEEccc
Q psy11859 293 DILQANLGIKDSDLLMLQEEVSVVFNGAA 321 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~~~vd~ViH~AA 321 (851)
.+... ....+++++|+||-+..
T Consensus 76 ~~~~~-------~~~~~l~~~DlVi~~~d 97 (174)
T cd01487 76 KIDEN-------NLEGLFGDCDIVVEAFD 97 (174)
T ss_pred ecChh-------hHHHHhcCCCEEEECCC
Confidence 66542 56677889999999843
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.47 E-value=17 Score=39.89 Aligned_cols=37 Identities=30% Similarity=0.584 Sum_probs=28.9
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEe-cCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILC-RAKRG 257 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~-R~~~~ 257 (851)
++|.|.||+|+-|..|++.|+.. |++. +.+.. |...+
T Consensus 3 ~kV~IvGasGYtG~EL~rlL~~H-p~ve-~~~~ss~~~~g 40 (349)
T COG0002 3 IKVGIVGASGYTGLELLRLLAGH-PDVE-LILISSRERAG 40 (349)
T ss_pred ceEEEEcCCCCcHHHHHHHHhcC-CCeE-EEEeechhhcC
Confidence 58999999999999999999876 8887 44443 33344
|
|
| >PRK04860 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.12 Score=50.48 Aligned_cols=36 Identities=8% Similarity=0.131 Sum_probs=20.0
Q ss_pred ceeecCCccccchhhhhhhcccccCCcccccccCCccCcccc
Q psy11859 691 IFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYA 732 (851)
Q Consensus 691 ~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~ 732 (851)
+|.|. |++ ....+.+|.++|+++++|.| ..|+..|.
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC--~~C~~~l~ 154 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRC--RRCGETLV 154 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHHHhcCCccEEC--CCCCceeE
Confidence 45555 554 44455556666666566666 45655554
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=91.03 E-value=2.5 Score=46.32 Aligned_cols=107 Identities=10% Similarity=0.111 Sum_probs=66.2
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
++|-|.|+ |.+|..++..|+..+. ..|.++++.+.- ...+..++.....+. ....++.+ .+
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~--~~VvlvDi~~~l--~~g~a~d~~~~~~~~-------~~~~~i~~-t~------ 62 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKEL--ADLVLLDVVEGI--PQGKALDMYEASPVG-------GFDTKVTG-TN------ 62 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCC--CeEEEEeCCCCh--hHHHHHhhhhhhhcc-------CCCcEEEe-cC------
Confidence 57999997 9999999999998763 268888884432 111111111100000 00011111 12
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcC
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMK 351 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~ 351 (851)
++.. +.++|+||=+|+...- +.+..+.+..|+.-.+.+++...+..
T Consensus 63 ------d~~~-~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~ 109 (305)
T TIGR01763 63 ------NYAD-TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS 109 (305)
T ss_pred ------CHHH-hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 2333 5789999999997543 33445788899999999988877764
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.02 E-value=3.8 Score=45.35 Aligned_cols=168 Identities=18% Similarity=0.192 Sum_probs=91.5
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHh-CCCccEEEEEecC-CCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRS-CPDIGKVYILCRA-KRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~-g~~v~~V~~l~R~-~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
++.+|.|.||||++|..|++-|.++ .|. .+|..+... ..+.... |. . ..+.+ . |+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~-~~l~~laS~~saG~~~~-----------~~-------~--~~~~v-~-~~ 59 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPV-GELYALASEESAGETLR-----------FG-------G--KSVTV-Q-DA 59 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCc-eEEEEEEccCcCCceEE-----------EC-------C--cceEE-E-eC
Confidence 4578999999999999999988875 354 566666433 2231100 00 0 01111 1 22
Q ss_pred CCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccc
Q psy11859 295 LQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEK 374 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~ 374 (851)
. . ..+.++|+||=++..- -+..++..+.+.+ .++|=.|+++-.-+..
T Consensus 60 ~---------~--~~~~~~Dvvf~a~p~~---------------~s~~~~~~~~~~g--~~VIDlS~~fRl~~~v----- 106 (336)
T PRK08040 60 A---------E--FDWSQAQLAFFVAGRE---------------ASAAYAEEATNAG--CLVIDSSGLFALEPDV----- 106 (336)
T ss_pred c---------h--hhccCCCEEEECCCHH---------------HHHHHHHHHHHCC--CEEEECChHhcCCCCC-----
Confidence 1 1 1236799999887542 1223444454554 3577788876544321
Q ss_pred cCCCC-CCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCC-CEEEEecccccCCCCCCchhHh
Q psy11859 375 LYPSP-VSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKL-PVVIVRPSIVLPSFQEPVPGWV 452 (851)
Q Consensus 375 ~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l-~~~ivRp~~V~G~~~~p~p~~i 452 (851)
.|..| +++ +.++.+...-+-.-||.|+.+=.++=.=+.+.. .+ ++++-=...|-|.+..+.....
T Consensus 107 P~~lPEvn~------------~~l~~i~~~~iIAnPgC~~t~~~laL~PL~~~~-~i~~viV~t~qgvSGAG~~~~~~L~ 173 (336)
T PRK08040 107 PLVVPEVNP------------FVLADYRNRNIIAVADSLTSQLLTAIKPLIDQA-GLSRLHVTNLLSASAHGKAAVDALA 173 (336)
T ss_pred ceEccccCH------------HHHhhhccCCEEECCCHHHHHHHHHHHHHHHhC-CCeEEEEEeeccccccChhhHHHHH
Confidence 12222 222 223333323344568999987776655554432 33 3666666777788776655443
Q ss_pred h
Q psy11859 453 D 453 (851)
Q Consensus 453 ~ 453 (851)
+
T Consensus 174 ~ 174 (336)
T PRK08040 174 G 174 (336)
T ss_pred H
Confidence 3
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.37 Score=53.56 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=28.8
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK 255 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~ 255 (851)
+|+|.||||++|..|++.|.+++..+.++..+.+..
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~ 36 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDR 36 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccc
Confidence 489999999999999999988765556676666653
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.58 E-value=3.7 Score=45.74 Aligned_cols=115 Identities=12% Similarity=0.133 Sum_probs=73.4
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEE-cCCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIE-GDILQA 297 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~-gDi~~~ 297 (851)
++|.|+|| |.||+.++-.|+..+ -..+|.+++..+..... ...++.... + ......+.. +|
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~-l~~el~LiDi~~~~~~g--~a~DL~~~~---------~-~~~~~~i~~~~d---- 99 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQD-LADELALVDVNPDKLRG--EMLDLQHAA---------A-FLPRTKILASTD---- 99 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CCCEEEEEeCCCchhhH--HHHHHHhhh---------h-cCCCCEEEeCCC----
Confidence 69999996 999999999988764 44689999986543211 111221110 1 112222221 22
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
++ .++++|+||=+|+...- ..+-.+.+..|+.-.+.+.+...+.. .+.++.+=|
T Consensus 100 --------y~-~~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~-p~~ivivvt 154 (350)
T PLN02602 100 --------YA-VTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYS-PDTILLIVS 154 (350)
T ss_pred --------HH-HhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 22 26899999999997543 34456788899999999999888774 444444333
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.56 E-value=25 Score=38.51 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=23.5
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCcc
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIG 246 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~ 246 (851)
..+|.|.||||++|..|++.|.+. |++.
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~h-p~~~ 29 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGR-SDIE 29 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcC-CCeE
Confidence 358999999999999999977766 7653
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.44 E-value=1.3 Score=48.20 Aligned_cols=38 Identities=34% Similarity=0.425 Sum_probs=31.9
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK 255 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~ 255 (851)
+++|.|-||||-+|+.+++.|.++.+.+..+.++....
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~r 38 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASAR 38 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEeccc
Confidence 36899999999999999999999778887777776544
|
|
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=90.19 E-value=1.5 Score=52.02 Aligned_cols=102 Identities=16% Similarity=0.151 Sum_probs=61.3
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH-----HHHh---c---ChhhHHHhhhCcc
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-----AEFS---K---LPVFERLRKECPA 282 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl-----~~~~---~---~~~f~~l~~~~~~ 282 (851)
+-+++.+|||.||+| ||+.+++.|++.| |.+|.+++...-..+-..|. .++. . ...-++|++.+|+
T Consensus 334 ekL~~~kVLIvGaGG-LGs~VA~~La~~G--Vg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~ 410 (664)
T TIGR01381 334 ERYSQLKVLLLGAGT-LGCNVARCLIGWG--VRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPS 410 (664)
T ss_pred HHHhcCeEEEECCcH-HHHHHHHHHHHcC--CCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCC
Confidence 447789999999866 7999999999976 68999988764332222221 1221 0 1223445555665
Q ss_pred cCCCeEEEEcCC------CCCc----CCCCHHHHHHHhcCccEEEEcc
Q psy11859 283 QLSRLHIIEGDI------LQAN----LGIKDSDLLMLQEEVSVVFNGA 320 (851)
Q Consensus 283 ~~~~v~~v~gDi------~~~~----lgls~~~~~~~~~~vd~ViH~A 320 (851)
. +++.+...| -++. .--+.+.+..++++.|+||-+.
T Consensus 411 v--~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~t 456 (664)
T TIGR01381 411 I--QATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLL 456 (664)
T ss_pred c--EEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECC
Confidence 4 444444333 2221 0001135677889999999876
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.14 E-value=3 Score=45.67 Aligned_cols=115 Identities=14% Similarity=0.042 Sum_probs=67.9
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
++|.|.|| |.+|+.++..|+..+. . .|+++++.+... .....++. +.. .+.. .. +.++...
T Consensus 3 ~KI~VIGa-G~vG~~ia~~la~~~~-~-ev~L~D~~~~~~--~~~~~dl~-----~~~---~~~~-~~-----~~i~~~~ 63 (307)
T PRK06223 3 KKISIIGA-GNVGATLAHLLALKEL-G-DVVLFDIVEGVP--QGKALDIA-----EAA---PVEG-FD-----TKITGTN 63 (307)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-e-EEEEEECCCchh--HHHHHHHH-----hhh---hhcC-CC-----cEEEeCC
Confidence 68999999 9999999998887652 2 889998854322 11111111 100 0000 01 1111111
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEe
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHF 359 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~v 359 (851)
+++ .+.++|+||-+|+...- ..+..+.+.-|+.-.+.+++...+...-..+|.+
T Consensus 64 ------d~~-~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~ 118 (307)
T PRK06223 64 ------DYE-DIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVV 118 (307)
T ss_pred ------CHH-HHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 232 35899999999986543 3344577788998888888877766422234444
|
|
| >COG5048 FOG: Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.12 E-value=0.32 Score=55.41 Aligned_cols=122 Identities=13% Similarity=0.080 Sum_probs=89.6
Q ss_pred cCccCCCCCCCCCce--eeeec--cceeec--CCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHH--
Q psy11859 670 TGLWYPNGQIRSNRF--WHYFF--VIFTQI--LPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHL-- 741 (851)
Q Consensus 670 ~~~~~~~~~l~~h~~--~h~~~--~~~~c~--~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~-- 741 (851)
.....-...+..|.. .|+.+ +++.|. .|++.|.....+..|...|++.+++.|....|.+.+.....-..+.
T Consensus 296 ~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (467)
T COG5048 296 NISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQSL 375 (467)
T ss_pred cCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCccccccccCCCCccch
Confidence 333444788888888 79998 999999 8999999999999999999999999998777877776655422111
Q ss_pred ---hhhcCCCccccCccccCccccCchhHHHhhhhcCCCCC--ccCCCCCCcccc
Q psy11859 742 ---RRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP--YPCTLCVKKSLL 791 (851)
Q Consensus 742 ---~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp--~~C~~Cgk~f~~ 791 (851)
......+.+.|....|-..+.....+..|...|...++ +.|..|.+.+..
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (467)
T COG5048 376 QQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNR 430 (467)
T ss_pred hhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccC
Confidence 12223455666655577788888888888888877664 445567665543
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=89.98 E-value=5.5 Score=43.65 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=72.8
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|.|.|+ |.+|+.++..|+..+. +..|.++++...... ....++.... + .........+|
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~-~~ev~l~D~~~~~~~--g~a~dl~~~~---------~-~~~~~~i~~~d----- 61 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGL-ASEIVLVDINKAKAE--GEAMDLAHGT---------P-FVKPVRIYAGD----- 61 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCC-CCEEEEEECCchhhh--hHHHHHHccc---------c-ccCCeEEeeCC-----
Confidence 47999998 9999999999998763 367899998654321 1111111110 0 11122222222
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
+ ..++++|+||-+|+...- ..+..+....|+.-.+.+.+...+.. ...++.+-|
T Consensus 62 -------~-~~l~~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~-~~giiiv~t 116 (308)
T cd05292 62 -------Y-ADCKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYA-PDAILLVVT 116 (308)
T ss_pred -------H-HHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 2 236899999999997543 34555778889999999988887764 444554444
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.95 E-value=1.4 Score=53.29 Aligned_cols=125 Identities=19% Similarity=0.220 Sum_probs=75.9
Q ss_pred chhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH-----HHHhc---ChhhHHHhhhCcc
Q psy11859 211 DVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-----AEFSK---LPVFERLRKECPA 282 (851)
Q Consensus 211 ~i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl-----~~~~~---~~~f~~l~~~~~~ 282 (851)
+.++-+++.+|+|.|+ |=||+++++.|.+.| |.++.+++...-..+...|. .++-. ...-+++++.+|.
T Consensus 36 e~Q~kL~~~~VlIvG~-GGlGs~va~~Lar~G--VG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~ 112 (679)
T PRK14851 36 GEQERLAEAKVAIPGM-GGVGGVHLITMVRTG--IGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPF 112 (679)
T ss_pred HHHHHHhcCeEEEECc-CHHHHHHHHHHHHhC--CCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCC
Confidence 4566788999999995 558999999999986 57888877653222212220 11111 1122344455554
Q ss_pred cCCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 283 QLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 283 ~~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
. +|+.+...|+.. .+..+++++|+||-+.-...+.. -..|.+.|.+.+ + .||+.+.
T Consensus 113 ~--~I~~~~~~i~~~-------n~~~~l~~~DvVid~~D~~~~~~------------r~~l~~~c~~~~-i-P~i~~g~ 168 (679)
T PRK14851 113 L--EITPFPAGINAD-------NMDAFLDGVDVVLDGLDFFQFEI------------RRTLFNMAREKG-I-PVITAGP 168 (679)
T ss_pred C--eEEEEecCCChH-------HHHHHHhCCCEEEECCCCCcHHH------------HHHHHHHHHHCC-C-CEEEeec
Confidence 3 778888777643 56777899999996653221111 123556787764 3 4666543
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=89.89 E-value=1.9 Score=45.24 Aligned_cols=117 Identities=15% Similarity=0.169 Sum_probs=71.2
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH-----HHH---hcChhhHHHhhhCcccCCCeEEEE
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-----AEF---SKLPVFERLRKECPAQLSRLHIIE 291 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl-----~~~---~~~~~f~~l~~~~~~~~~~v~~v~ 291 (851)
+|||.| .|=+|+.+++.|.+.| |.++.+++...-..+-..|- .++ .....-+.+++..|+. +++.+.
T Consensus 1 kVlvvG-~GGlG~eilk~La~~G--vg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v--~i~~~~ 75 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMG--FGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNC--KVVPYQ 75 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcC--CCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCC--EEEEEe
Confidence 478888 5569999999999876 58999988764332222111 111 1112234455556653 688888
Q ss_pred cCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeee
Q psy11859 292 GDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTA 362 (851)
Q Consensus 292 gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa 362 (851)
+++.+.. ..-...+++.|+||-+... +..-+.|-++|.+.+ ..||..+|.
T Consensus 76 ~~i~~~~-----~~~~~f~~~~DvVi~a~Dn--------------~~aR~~ln~~c~~~~--iplI~~g~~ 125 (234)
T cd01484 76 NKVGPEQ-----DFNDTFFEQFHIIVNALDN--------------IIARRYVNGMLIFLI--VPLIESGTE 125 (234)
T ss_pred ccCChhh-----hchHHHHhCCCEEEECCCC--------------HHHHHHHHHHHHHcC--CCEEEEccc
Confidence 8886432 0123457889999987532 222344566777764 567777764
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=89.84 E-value=1.7 Score=46.93 Aligned_cols=97 Identities=19% Similarity=0.130 Sum_probs=57.6
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHH--H---HH--H---hcChhhHHHhhhCcccCCCeEE
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKAR--L---AE--F---SKLPVFERLRKECPAQLSRLHI 289 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~r--l---~~--~---~~~~~f~~l~~~~~~~~~~v~~ 289 (851)
+|||.|++| ||+.+++.|++.| |.+|.+++...-..+-..| + .+ + .....-++|++.+|.. +++.
T Consensus 1 kVLIvGaGG-LGs~vA~~La~aG--Vg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v--~v~~ 75 (307)
T cd01486 1 KCLLLGAGT-LGCNVARNLLGWG--VRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSI--DATG 75 (307)
T ss_pred CEEEECCCH-HHHHHHHHHHHcC--CCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCc--EEEE
Confidence 478887765 8999999999876 6889888865422211111 0 00 0 1112344566666654 4555
Q ss_pred EEcCCCCC----------cCCCCHHHHHHHhcCccEEEEccc
Q psy11859 290 IEGDILQA----------NLGIKDSDLLMLQEEVSVVFNGAA 321 (851)
Q Consensus 290 v~gDi~~~----------~lgls~~~~~~~~~~vd~ViH~AA 321 (851)
+...|.-+ ..-.+.+.+..++++.|+||-+.-
T Consensus 76 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tD 117 (307)
T cd01486 76 IVLSIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTD 117 (307)
T ss_pred eeeeccccccccccccccccccCHHHHHHHHhhCCEEEECCC
Confidence 55444111 111234567888999999999873
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.83 E-value=0.92 Score=48.78 Aligned_cols=35 Identities=26% Similarity=0.427 Sum_probs=31.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEec
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCR 253 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R 253 (851)
+.|++|+|.|+++.+|+-|+..|++.+ ..|.++.+
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~g---atVtv~~s 190 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKN---ASVTILHS 190 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCC---CeEEEEeC
Confidence 689999999999999999999999887 67777655
|
|
| >PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria | Back alignment and domain information |
|---|
Probab=89.75 E-value=4 Score=43.01 Aligned_cols=80 Identities=20% Similarity=0.373 Sum_probs=47.2
Q ss_pred CCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccc
Q psy11859 242 CPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA 321 (851)
Q Consensus 242 g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA 321 (851)
.|+++.| ++.-..+|. .+.|+++++..| .|.++.|+..+. -..+.+.+|++++..
T Consensus 60 Dp~mKaI-Vv~q~vpGt-----------~~af~kIkekRp----DIl~ia~~~~ED--------p~~i~~~aDi~~~~D- 114 (275)
T PF12683_consen 60 DPDMKAI-VVSQAVPGT-----------AEAFRKIKEKRP----DILLIAGEPHED--------PEVISSAADIVVNPD- 114 (275)
T ss_dssp -TTEEEE-EEE-SS--------------HHHHHHHHHH-T----TSEEEESS--S---------HHHHHHHSSEEEE---
T ss_pred CCCccEE-EEeCCCcch-----------HHHHHHHHhcCC----CeEEEcCCCcCC--------HHHHhhccCeEeccc-
Confidence 4776444 444554553 345777777755 567888887753 234445688988833
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 322 SLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 322 ~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
++..-..++.+|+++| .+.|||+|-
T Consensus 115 --------------~~~~G~~i~~~Ak~mG-AktFVh~sf 139 (275)
T PF12683_consen 115 --------------EISRGYTIVWAAKKMG-AKTFVHYSF 139 (275)
T ss_dssp --------------HHHHHHHHHHHHHHTT--S-EEEEEE
T ss_pred --------------hhhccHHHHHHHHHcC-CceEEEEec
Confidence 3445577899999997 899999998
|
They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A. |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.66 E-value=1 Score=49.29 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=29.9
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKR 256 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~ 256 (851)
++|.|.| +|++|+.++..|++.| ..|.+.+|...
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G---~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAG---HEVRLWDADPA 36 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCC---CeeEEEeCCHH
Confidence 5799999 9999999999999998 68899988753
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.63 E-value=0.98 Score=48.74 Aligned_cols=35 Identities=29% Similarity=0.431 Sum_probs=31.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEec
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCR 253 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R 253 (851)
++|++|+|.|++|.+|+.++..|++.+ ..|.+..|
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~g---atVtv~~~ 191 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNAN---ATVTICHS 191 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCC---CEEEEEeC
Confidence 689999999999999999999999887 47777665
|
|
| >smart00355 ZnF_C2H2 zinc finger | Back alignment and domain information |
|---|
Probab=89.42 E-value=0.23 Score=31.85 Aligned_cols=24 Identities=29% Similarity=0.771 Sum_probs=21.2
Q ss_pred cccCccccCccccCchhHHHhhhhcC
Q psy11859 750 FKCDWQDCKWQFSRSDELSRHRRSHF 775 (851)
Q Consensus 750 ~~C~~~~C~k~F~~~~~L~~H~r~H~ 775 (851)
|.|. .|++.|.....|..|++.|.
T Consensus 1 ~~C~--~C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCP--ECGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCC--CCcchhCCHHHHHHHHHHhc
Confidence 5787 89999999999999998775
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.19 E-value=5.9 Score=41.76 Aligned_cols=39 Identities=31% Similarity=0.435 Sum_probs=33.3
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRG 257 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~ 257 (851)
.++|.|.||+|=+|+.|++.+.+. |++.-+-+++|+...
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-~~~~L~aa~~~~~~~ 40 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-PDLELVAAFDRPGSL 40 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-CCceEEEEEecCCcc
Confidence 468999999999999999999876 677778888888653
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=89.17 E-value=5.3 Score=43.53 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=26.1
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEE
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYIL 251 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l 251 (851)
+|.|-|||||.|..|++.|++. |++.-+.+.
T Consensus 3 ~v~IvGasGy~G~el~rlL~~H-P~~el~~l~ 33 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGR-DDIELLSIA 33 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCC-CCeEEEEEe
Confidence 6999999999999999999887 887555543
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.08 E-value=7.1 Score=43.35 Aligned_cols=168 Identities=19% Similarity=0.221 Sum_probs=86.7
Q ss_pred CCEEEEecCccHHHHHHHHHHHHh-CCCccEEEEEecCC-CCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRS-CPDIGKVYILCRAK-RGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~-g~~v~~V~~l~R~~-~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+.+|.|.||||++|..|++-|.+. .-.|.++.++.... .+... . |. ...+.+...|
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~--~---------~~---------~~~l~v~~~~-- 62 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTV--Q---------FK---------GREIIIQEAK-- 62 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCe--e---------eC---------CcceEEEeCC--
Confidence 468999999999999999988753 22344566665432 22110 0 00 0012221111
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCccccccc
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKL 375 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~ 375 (851)
+ . .+.++|+||=+++.- -+..++..+.+.+ ..+|=.|+++-.-+..+ .
T Consensus 63 -~---------~-~~~~~Divf~a~~~~---------------~s~~~~~~~~~~G--~~VID~Ss~fR~~~~vp----l 110 (347)
T PRK06728 63 -I---------N-SFEGVDIAFFSAGGE---------------VSRQFVNQAVSSG--AIVIDNTSEYRMAHDVP----L 110 (347)
T ss_pred -H---------H-HhcCCCEEEECCChH---------------HHHHHHHHHHHCC--CEEEECchhhcCCCCCC----e
Confidence 1 1 126799999887432 1233444454555 46677777665422211 1
Q ss_pred CCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCC-EEEEecccccCCCCCCchhHhhh
Q psy11859 376 YPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLP-VVIVRPSIVLPSFQEPVPGWVDS 454 (851)
Q Consensus 376 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~-~~ivRp~~V~G~~~~p~p~~i~~ 454 (851)
..+.++++. +.. ... +-.-||.|+..=.+|=.=+.+.. ++. +++-=...|-|.+...++...++
T Consensus 111 vvPEvN~e~------------i~~-~~~-iIanPnC~tt~~~laL~PL~~~~-~i~~v~V~t~qavSGAG~~gv~eL~~q 175 (347)
T PRK06728 111 VVPEVNAHT------------LKE-HKG-IIAVPNCSALQMVTALQPIRKVF-GLERIIVSTYQAVSGSGIHAIQELKEQ 175 (347)
T ss_pred EeCCcCHHH------------Hhc-cCC-EEECCCCHHHHHHHHHHHHHHcC-CccEEEEEEeecccccchhhHHHHHHH
Confidence 112234421 111 112 23348888877766655444332 232 44444556677776666655554
|
|
| >PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A | Back alignment and domain information |
|---|
Probab=88.95 E-value=0.19 Score=32.61 Aligned_cols=20 Identities=5% Similarity=-0.313 Sum_probs=9.6
Q ss_pred eecCCccccchhhhhhhccc
Q psy11859 693 TQILPAYLVDFIMVLIRQKT 712 (851)
Q Consensus 693 ~c~~c~~~~~~~~~l~~h~~ 712 (851)
.|++|.+.|++...+..|++
T Consensus 2 ~C~~C~~~f~s~~~~~~H~~ 21 (25)
T PF12874_consen 2 YCDICNKSFSSENSLRQHLR 21 (25)
T ss_dssp EETTTTEEESSHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHC
Confidence 44444444444444444443
|
|
| >KOG2013|consensus | Back alignment and domain information |
|---|
Probab=88.42 E-value=0.39 Score=53.79 Aligned_cols=44 Identities=23% Similarity=0.232 Sum_probs=33.6
Q ss_pred hhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCC
Q psy11859 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGL 258 (851)
Q Consensus 212 i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~ 258 (851)
-.+..++.+|||.||+| ||..|+..|+..|- ..|.+++-..-..
T Consensus 6 ~~eai~~~riLvVGaGG-IGCELLKnLal~gf--~~IhiIDlDTIDl 49 (603)
T KOG2013|consen 6 KHEAIKSGRILVVGAGG-IGCELLKNLALTGF--EEIHIIDLDTIDL 49 (603)
T ss_pred HHHHhccCeEEEEecCc-ccHHHHHHHHHhcC--CeeEEEeccceec
Confidence 34456788999999987 89999999998864 6777776654433
|
|
| >KOG1494|consensus | Back alignment and domain information |
|---|
Probab=88.40 E-value=3 Score=43.99 Aligned_cols=117 Identities=20% Similarity=0.124 Sum_probs=78.4
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC-CCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK-RGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~-~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
.+-+|.|-||+|=||.-|. .||+..|.|..+.+.+... ++..+ .+.. -+....+.-+.
T Consensus 27 ~~~KVAvlGAaGGIGQPLS-LLlK~np~Vs~LaLYDi~~~~GVaa--DlSH--------------I~T~s~V~g~~---- 85 (345)
T KOG1494|consen 27 RGLKVAVLGAAGGIGQPLS-LLLKLNPLVSELALYDIANTPGVAA--DLSH--------------INTNSSVVGFT---- 85 (345)
T ss_pred CcceEEEEecCCccCccHH-HHHhcCcccceeeeeecccCCcccc--cccc--------------cCCCCceeccC----
Confidence 3458999999999999985 4667789988887776542 22210 0000 00011111111
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
.+..++..+++.|+|+=-|+..+-+ -.-++.+++|..-.+.|..++.++- ...+|.+=|
T Consensus 86 ------g~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~c-P~A~i~vIs 145 (345)
T KOG1494|consen 86 ------GADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCC-PNALILVIS 145 (345)
T ss_pred ------ChhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhC-ccceeEeec
Confidence 1347888999999999999987654 3456889999999999999888763 566666655
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.38 E-value=1.1 Score=43.25 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=31.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK 255 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~ 255 (851)
.++++|+|+|+ |.+|..+++.|.+.+ ...|.+.+|..
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g--~~~v~v~~r~~ 53 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELG--AAKIVIVNRTL 53 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCC--CCEEEEEcCCH
Confidence 46789999998 899999999999875 36788888864
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.84 E-value=5.1 Score=44.19 Aligned_cols=116 Identities=16% Similarity=0.087 Sum_probs=71.0
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEE-cCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIE-GDIL 295 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~-gDi~ 295 (851)
+.++|.|.| +|.+|+.++..++..+ +..|+++++.+.... .+.+. +... .........+.. +
T Consensus 5 ~~~KI~IIG-aG~vG~~ia~~la~~g--l~~i~LvDi~~~~~~-~~~ld-~~~~---------~~~~~~~~~I~~~~--- 67 (321)
T PTZ00082 5 KRRKISLIG-SGNIGGVMAYLIVLKN--LGDVVLFDIVKNIPQ-GKALD-ISHS---------NVIAGSNSKVIGTN--- 67 (321)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCC--CCeEEEEeCCCchhh-HHHHH-HHhh---------hhccCCCeEEEECC---
Confidence 457899999 5999999999887665 346888888765421 12221 1110 000001122221 2
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCcc-h-----hHHHHHHHHHHHHHHHHHHHHhcCCce-EEEEee
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKLE-A-----ELKENVAANTRGTQRLLDIALKMKKLV-AFIHFS 360 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~-~-----~~~~~~~~Nv~Gt~~ll~~a~~~~~~~-~fV~vS 360 (851)
+++ .++++|+||.+|+...-. . +..+.+..|+.-.+.+++...+.. .+ .++.+|
T Consensus 68 ---------d~~-~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~s 128 (321)
T PTZ00082 68 ---------NYE-DIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVIT 128 (321)
T ss_pred ---------CHH-HhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 232 458999999999865422 2 456778889988888888887765 44 344444
|
|
| >PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A | Back alignment and domain information |
|---|
Probab=87.82 E-value=0.39 Score=42.59 Aligned_cols=61 Identities=18% Similarity=0.340 Sum_probs=9.0
Q ss_pred cccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCCCCccc
Q psy11859 721 QCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSL 790 (851)
Q Consensus 721 ~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~Cgk~f~ 790 (851)
+| ..|+..|.+...|..|+....+-.. . ....+.....+..+.+.-. ..++.|..|++.|.
T Consensus 1 ~C--~~C~~~f~~~~~l~~H~~~~H~~~~-~-----~~~~l~~~~~~~~~~~~~~-~~~~~C~~C~~~f~ 61 (100)
T PF12756_consen 1 QC--LFCDESFSSVDDLLQHMKKKHGFDI-P-----DQKYLVDPNRLLNYLRKKV-KESFRCPYCNKTFR 61 (100)
T ss_dssp ---------------------------------------------------------SSEEBSSSS-EES
T ss_pred Cc--ccccccccccccccccccccccccc-c-----ccccccccccccccccccc-CCCCCCCccCCCCc
Confidence 57 7799999999999999865443211 1 1112223333444443222 22688999988654
|
|
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=87.75 E-value=4.9 Score=47.33 Aligned_cols=106 Identities=15% Similarity=0.124 Sum_probs=66.7
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
.++..+|+|.|.+|+ |++|+-.|++.|. ..|.+++-..- .+...|+.++. .+.+. ..+.+.+-..|.
T Consensus 126 ~qR~akVlVlG~Gg~-~s~lv~sL~~sG~--~~I~~vd~D~v-~SNlnRIgEl~------e~A~~---~n~~v~v~~i~~ 192 (637)
T TIGR03693 126 LSRNAKILAAGSGDF-LTKLVRSLIDSGF--PRFHAIVTDAE-EHALDRIHELA------EIAEE---TDDALLVQEIDF 192 (637)
T ss_pred hhhcccEEEEecCch-HHHHHHHHHhcCC--CcEEEEecccc-chhhhHHHHHH------HHHHH---hCCCCceEeccC
Confidence 358889999998776 7788889999874 67777754443 33445554431 11111 223444444444
Q ss_pred CCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcC
Q psy11859 295 LQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMK 351 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~ 351 (851)
... .++..++++.|+|++++-.... ..+..+.++|.+.+
T Consensus 193 ~~~------~dl~ev~~~~DiVi~vsDdy~~------------~~Lr~lN~acvkeg 231 (637)
T TIGR03693 193 AED------QHLHEAFEPADWVLYVSDNGDI------------DDLHALHAFCKEEG 231 (637)
T ss_pred Ccc------hhHHHhhcCCcEEEEECCCCCh------------HHHHHHHHHHHHcC
Confidence 433 4889999999999999865321 22345566777664
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=87.39 E-value=3.9 Score=43.79 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=29.1
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK 255 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~ 255 (851)
++|.|.|++|-+|+.+++.+.+. |++.-|.+.+|..
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~-~~~elvav~d~~~ 37 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAA-EGLQLVAAFERHG 37 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCC
Confidence 48999999999999999999876 6766666666543
|
|
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=87.36 E-value=0.066 Score=54.31 Aligned_cols=79 Identities=6% Similarity=0.009 Sum_probs=53.4
Q ss_pred HHHhhhhcccceeEEecCCCCCCCCcccccccccccccceecCC----CCCcccccccccccchhhhhhhhhhHHHHHHh
Q psy11859 82 ELALLGVTESNVYLIDIDGNGRFPPARVKCEFQEDSTKTIVEHN----LPDQTDVRGIHETDFKFTIKYREFTQEMLSEL 157 (851)
Q Consensus 82 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ddd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (851)
++++|+|. .|..+++.+.. ..++++||+|||..+.....+ ++...++.+...+..+++++++ .....+++
T Consensus 2 ~~I~Gag~-~g~~~~~~l~~---~g~~vvgfid~~~~~~~~~i~g~pvlg~~~~l~~~~~~~~~~iiai~--~~~~~~~i 75 (201)
T TIGR03570 2 LVIIGAGG-HGRVVADIAED---SGWEIVGFLDDNPALQGTSVDGLPVLGGDEDLLRYPPDEVDLVVAIG--DNKLRRRL 75 (201)
T ss_pred EEEEcCCH-HHHHHHHHHHh---CCCEEEEEEcCCccccCcccCCccEECCHHHHhhhcccccEEEEEcC--CHHHHHHH
Confidence 46888988 88888887753 268999999999876443332 4454455444444467888887 45666777
Q ss_pred hhhhhhhhh
Q psy11859 158 ISHSLYCRQ 166 (851)
Q Consensus 158 ~~~~~~~~~ 166 (851)
++.+...+.
T Consensus 76 ~~~l~~~g~ 84 (201)
T TIGR03570 76 FEKLKAKGY 84 (201)
T ss_pred HHHHHhCCC
Confidence 777665543
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.20 E-value=2.5 Score=52.62 Aligned_cols=124 Identities=19% Similarity=0.207 Sum_probs=76.5
Q ss_pred hhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH-----HHHhc---ChhhHHHhhhCccc
Q psy11859 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-----AEFSK---LPVFERLRKECPAQ 283 (851)
Q Consensus 212 i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl-----~~~~~---~~~f~~l~~~~~~~ 283 (851)
-++-++..+|+|.|++ =+|+.++..|.+.| |.+|.+++-..-..+...|. .++-. ...-+++++.+|..
T Consensus 326 ~Q~kL~~srVlVvGlG-GlGs~ia~~LAraG--VG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v 402 (989)
T PRK14852 326 GQRRLLRSRVAIAGLG-GVGGIHLMTLARTG--IGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFL 402 (989)
T ss_pred HHHHHhcCcEEEECCc-HHHHHHHHHHHHcC--CCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCC
Confidence 4566889999999955 48999999999986 57888887654332222221 11111 11233455555554
Q ss_pred CCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 284 LSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 284 ~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
+|+.+...+... ....+++++|+||-+.-...++ ..+.+.+.|.+.+ ..||+.++
T Consensus 403 --~I~~~~~~I~~e-------n~~~fl~~~DiVVDa~D~~~~~------------~rr~l~~~c~~~~--IP~I~ag~ 457 (989)
T PRK14852 403 --DIRSFPEGVAAE-------TIDAFLKDVDLLVDGIDFFALD------------IRRRLFNRALELG--IPVITAGP 457 (989)
T ss_pred --eEEEEecCCCHH-------HHHHHhhCCCEEEECCCCccHH------------HHHHHHHHHHHcC--CCEEEeec
Confidence 677777776543 5677789999999655322111 1234556676665 45777666
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=87.10 E-value=3.6 Score=42.73 Aligned_cols=124 Identities=21% Similarity=0.226 Sum_probs=70.1
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH-HHH---hcCh----hhHHHhhhCcccCC
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-AEF---SKLP----VFERLRKECPAQLS 285 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl-~~~---~~~~----~f~~l~~~~~~~~~ 285 (851)
+-++..+|+|.|.+| +|++.+|.|.|+| |.+|.+++-..-..+...|- ..+ ...+ +-++++.-+|+.
T Consensus 26 ekl~~~~V~VvGiGG-VGSw~veALaRsG--ig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c-- 100 (263)
T COG1179 26 EKLKQAHVCVVGIGG-VGSWAVEALARSG--IGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPEC-- 100 (263)
T ss_pred HHHhhCcEEEEecCc-hhHHHHHHHHHcC--CCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCc--
Confidence 335778899999877 8999999999986 57888877654333222221 111 1111 112233333322
Q ss_pred CeEEEEcCCCCCcCCCCHHHHHHHh-cCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeee
Q psy11859 286 RLHIIEGDILQANLGIKDSDLLMLQ-EEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFC 364 (851)
Q Consensus 286 ~v~~v~gDi~~~~lgls~~~~~~~~-~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~ 364 (851)
+|..+.-=++ ++.++.++ .++|+||-+-- ||..=..|+..|.+.+ + -.+||..+
T Consensus 101 ~V~~~~~f~t-------~en~~~~~~~~~DyvIDaiD--------------~v~~Kv~Li~~c~~~k-i---~vIss~Ga 155 (263)
T COG1179 101 EVTAINDFIT-------EENLEDLLSKGFDYVIDAID--------------SVRAKVALIAYCRRNK-I---PVISSMGA 155 (263)
T ss_pred eEeehHhhhC-------HhHHHHHhcCCCCEEEEchh--------------hhHHHHHHHHHHHHcC-C---CEEeeccc
Confidence 3333322222 23555554 46999997653 3344456889998875 3 34566555
Q ss_pred eCC
Q psy11859 365 HPD 367 (851)
Q Consensus 365 ~~~ 367 (851)
.+.
T Consensus 156 g~k 158 (263)
T COG1179 156 GGK 158 (263)
T ss_pred cCC
Confidence 443
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=86.77 E-value=2.4 Score=46.33 Aligned_cols=114 Identities=12% Similarity=0.093 Sum_probs=70.8
Q ss_pred EEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcCC
Q psy11859 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLG 300 (851)
Q Consensus 221 VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lg 300 (851)
|.|.|+ |.+|+.++-.|+..+ -+..|.++++.+...... ..++.+ -.+.. ....+..+ .
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~-~~~el~l~D~~~~~~~g~--~~DL~~---------~~~~~-~~~~i~~~--~----- 59 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKG-LASELVLVDVNEEKAKGD--ALDLSH---------ASAFL-ATGTIVRG--G----- 59 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeCCccHHHHH--HHhHHH---------hcccc-CCCeEEEC--C-----
Confidence 457787 789999999888764 446899999865432111 111111 11111 12222221 1
Q ss_pred CCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 301 IKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 301 ls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
+. ..++++|+||-+|+...- ..+-.+....|+.-.+.+.+..++.. .+.+|.+=|
T Consensus 60 ----~~-~~l~~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~s 115 (300)
T cd00300 60 ----DY-ADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVS 115 (300)
T ss_pred ----CH-HHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcc
Confidence 22 256899999999997543 34556778899999999999998875 555555444
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=86.57 E-value=3.7 Score=37.46 Aligned_cols=70 Identities=24% Similarity=0.287 Sum_probs=46.4
Q ss_pred EEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcCC
Q psy11859 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLG 300 (851)
Q Consensus 221 VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lg 300 (851)
|+|.|+ |-+|..+++.|.+.+ ..|.++++.... ... +++ ..+.++.||.++++
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~---~~vvvid~d~~~------~~~---------~~~------~~~~~i~gd~~~~~-- 53 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGG---IDVVVIDRDPER------VEE---------LRE------EGVEVIYGDATDPE-- 53 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTT---SEEEEEESSHHH------HHH---------HHH------TTSEEEES-TTSHH--
T ss_pred eEEEcC-CHHHHHHHHHHHhCC---CEEEEEECCcHH------HHH---------HHh------cccccccccchhhh--
Confidence 567777 679999999999965 588888876422 211 111 14779999999986
Q ss_pred CCHHHHHH-HhcCccEEEEccc
Q psy11859 301 IKDSDLLM-LQEEVSVVFNGAA 321 (851)
Q Consensus 301 ls~~~~~~-~~~~vd~ViH~AA 321 (851)
.+.. -+++++.|+=+..
T Consensus 54 ----~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 54 ----VLERAGIEKADAVVILTD 71 (116)
T ss_dssp ----HHHHTTGGCESEEEEESS
T ss_pred ----HHhhcCccccCEEEEccC
Confidence 4554 3467887776553
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.20 E-value=1.5 Score=41.47 Aligned_cols=87 Identities=14% Similarity=0.187 Sum_probs=59.2
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++++|++.|.+ -|..+++.|.+.| ..|.+++.+... .+..++ ..+.++.+|+.+
T Consensus 16 ~~~kileIG~G--fG~~vA~~L~~~G---~~ViaIDi~~~a---V~~a~~------------------~~~~~v~dDlf~ 69 (134)
T PRK04148 16 KNKKIVELGIG--FYFKVAKKLKESG---FDVIVIDINEKA---VEKAKK------------------LGLNAFVDDLFN 69 (134)
T ss_pred cCCEEEEEEec--CCHHHHHHHHHCC---CEEEEEECCHHH---HHHHHH------------------hCCeEEECcCCC
Confidence 45789999877 6778888888888 688888887642 111111 157899999999
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcC
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMK 351 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~ 351 (851)
+++ .+-+++|.|+-+= ++.+.. .-++++|++.+
T Consensus 70 p~~--------~~y~~a~liysir-------pp~el~-------~~~~~la~~~~ 102 (134)
T PRK04148 70 PNL--------EIYKNAKLIYSIR-------PPRDLQ-------PFILELAKKIN 102 (134)
T ss_pred CCH--------HHHhcCCEEEEeC-------CCHHHH-------HHHHHHHHHcC
Confidence 984 3446788887532 222222 35788998886
|
|
| >KOG0023|consensus | Back alignment and domain information |
|---|
Probab=85.39 E-value=1.4 Score=47.34 Aligned_cols=101 Identities=12% Similarity=0.151 Sum_probs=63.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
-.|+.|-|+|++| ||+.-++.-.+.| .+|++++++.+.. ++-++. | ..+.+..-..
T Consensus 180 ~pG~~vgI~GlGG-LGh~aVq~AKAMG---~rV~vis~~~~kk--eea~~~---------L---------GAd~fv~~~~ 235 (360)
T KOG0023|consen 180 GPGKWVGIVGLGG-LGHMAVQYAKAMG---MRVTVISTSSKKK--EEAIKS---------L---------GADVFVDSTE 235 (360)
T ss_pred CCCcEEEEecCcc-cchHHHHHHHHhC---cEEEEEeCCchhH--HHHHHh---------c---------CcceeEEecC
Confidence 3799999999999 9998888777778 7999999986442 222211 1 1222222223
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
|++ .+..+..-.|.++|.+... ...++ .-++++++..+ ++|.++-
T Consensus 236 d~d------~~~~~~~~~dg~~~~v~~~-a~~~~-----------~~~~~~lk~~G---t~V~vg~ 280 (360)
T KOG0023|consen 236 DPD------IMKAIMKTTDGGIDTVSNL-AEHAL-----------EPLLGLLKVNG---TLVLVGL 280 (360)
T ss_pred CHH------HHHHHHHhhcCcceeeeec-cccch-----------HHHHHHhhcCC---EEEEEeC
Confidence 555 6677777778888887644 11111 12456665554 5677765
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=85.21 E-value=3.6 Score=42.12 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=29.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEec
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCR 253 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R 253 (851)
++|++|+|.|| |=+|...++.|++.| ..|.++.+
T Consensus 8 l~~k~vLVIGg-G~va~~ka~~Ll~~g---a~V~VIs~ 41 (202)
T PRK06718 8 LSNKRVVIVGG-GKVAGRRAITLLKYG---AHIVVISP 41 (202)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCC---CeEEEEcC
Confidence 57899999998 999999999999988 57777754
|
|
| >PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A | Back alignment and domain information |
|---|
Probab=85.00 E-value=0.28 Score=31.51 Aligned_cols=24 Identities=13% Similarity=-0.016 Sum_probs=0.0
Q ss_pred eeecCCccccchhhhhhhcccccCC
Q psy11859 692 FTQILPAYLVDFIMVLIRQKTFENL 716 (851)
Q Consensus 692 ~~c~~c~~~~~~~~~l~~h~~~h~~ 716 (851)
|.|..|++... +..|..|++.|.+
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H~ 24 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHHP 24 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhCc
|
|
| >PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length | Back alignment and domain information |
|---|
Probab=84.89 E-value=0.48 Score=31.44 Aligned_cols=22 Identities=9% Similarity=-0.238 Sum_probs=15.9
Q ss_pred eeecCCccccchhhhhhhcccc
Q psy11859 692 FTQILPAYLVDFIMVLIRQKTF 713 (851)
Q Consensus 692 ~~c~~c~~~~~~~~~l~~h~~~ 713 (851)
|.|..|++.|.+...+..|++.
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 5677777777777777777654
|
The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A. |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=84.71 E-value=5.5 Score=36.91 Aligned_cols=33 Identities=39% Similarity=0.672 Sum_probs=25.2
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEE-ecC
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYIL-CRA 254 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l-~R~ 254 (851)
+|.|+|++|.+|..+++.|... |++ +|..+ .|.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-~~~-~l~av~~~~ 34 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-PDF-EVVALAASA 34 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-CCc-eEEEEEech
Confidence 4789999999999999998875 554 45555 443
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=84.56 E-value=1.7 Score=47.59 Aligned_cols=38 Identities=26% Similarity=0.285 Sum_probs=31.9
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK 255 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~ 255 (851)
.-.+.+|||+||+|.+|..+++.+...| ..|+++.+..
T Consensus 160 ~~~~~~vlI~ga~g~vG~~~~~~a~~~g---~~v~~~~~~~ 197 (332)
T cd08259 160 VKKGDTVLVTGAGGGVGIHAIQLAKALG---ARVIAVTRSP 197 (332)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcC---CeEEEEeCCH
Confidence 3467899999999999999999999887 5777777653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >KOG1178|consensus | Back alignment and domain information |
|---|
Probab=84.38 E-value=0.32 Score=60.65 Aligned_cols=134 Identities=25% Similarity=0.247 Sum_probs=99.1
Q ss_pred EEEecCccHHHHHHHHHHHHhCCC--ccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 221 VLVTGGTGFMGKVLLEKLLRSCPD--IGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 221 VlVTGatGFIG~~Lv~~Ll~~g~~--v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
+++||.+||+|+...+.++....- ...+.++.|..+......|..... ..+. ...++..-++..+.+++....
T Consensus 721 ~~~~~~~~~l~~~~l~~~~~~~~~~~~i~~~~~~~a~~e~a~~~~~~~~i--~~~~---~~~e~~~i~~~~~~~~~~~~~ 795 (1032)
T KOG1178|consen 721 VFLTGYTGYLGRRKLSNLVKLSNFFYIILVFALVRASSEEASGGRLQDAI--QIYG---VLNEELLINIIVHLIDLSKSL 795 (1032)
T ss_pred eeeeeccceehhhhhhhhhhhhhhhheeeeEEEeccCCchhhccchhchh--hhhh---hccccccceeeeehhhhhhhh
Confidence 899999999999999999876531 234666777665544434433221 1222 222334457888999999999
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
.|+...-+..+.+.++.++|.++.++..-+..+....|+.+|.+.+..+...+ +.+..+|+
T Consensus 796 ~~~~~~l~~~l~~~~~~~i~~~~~~~~v~~~t~~~~~~~~~~~~~~~l~~~l~--~~~~~~s~ 856 (1032)
T KOG1178|consen 796 FGLEDTLWNKLQEPVSIVIHNGALVHEVLRYTELRYPNVIGTITVLPLYSFLK--KKPKDISL 856 (1032)
T ss_pred hcccchhhhccccCcceecccccceeeechhhccCCceeeeeeeeeeeecccc--ccceeEEe
Confidence 99999999999999999999999998888888888999999999999986543 44444444
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=84.36 E-value=1.2 Score=49.64 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=24.5
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEE
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYIL 251 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l 251 (851)
++|.|+||||++|++|++.|.+. |++ .|..+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~-~~~-~l~~v 31 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH-PYF-ELAKV 31 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCc-eEEEE
Confidence 47999999999999999977765 554 44444
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=84.18 E-value=3.1 Score=40.86 Aligned_cols=35 Identities=31% Similarity=0.423 Sum_probs=27.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEec
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCR 253 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R 253 (851)
++||+|+|.|.++.+|+-|...|++++ ..|.+...
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~---atVt~~h~ 68 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKG---ATVTICHS 68 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT----EEEEE-T
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCC---CeEEeccC
Confidence 689999999999999999999999987 56665433
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >KOG1496|consensus | Back alignment and domain information |
|---|
Probab=84.10 E-value=8.8 Score=39.65 Aligned_cols=118 Identities=19% Similarity=0.071 Sum_probs=63.7
Q ss_pred CEEEEecCccHHHHHHHHHHHHh---CCC-ccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRS---CPD-IGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~---g~~-v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
-+||||||+|-||-+|+-.+.+- |++ -..+.+|+.+... ...+-+.--++.-.|..|+. .+.
T Consensus 5 irVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~-~~LegV~mELqD~a~PlL~~-------------Vva 70 (332)
T KOG1496|consen 5 IRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMM-SVLEGVKMELQDCALPLLKG-------------VVA 70 (332)
T ss_pred eEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHH-HHHHHHHHHHHhhhhhHHHh-------------hhc
Confidence 37999999999999999998863 222 1234444443321 12222211111112222211 111
Q ss_pred CCCcCCCCHHHHHHHhcCccEEEEccccCCcch-hHHHHHHHHHHHHHHHHHHHHhc--CCceEEEE
Q psy11859 295 LQANLGIKDSDLLMLQEEVSVVFNGAASLKLEA-ELKENVAANTRGTQRLLDIALKM--KKLVAFIH 358 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~-~~~~~~~~Nv~Gt~~ll~~a~~~--~~~~~fV~ 358 (851)
+. +-...++++|+.|-..|..+-+. .-++....||.--+.=-.+..++ +++|.+|-
T Consensus 71 tt--------d~~~afkdv~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVV 129 (332)
T KOG1496|consen 71 TT--------DEVEAFKDVDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVV 129 (332)
T ss_pred cc--------ChhhhhccCcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEe
Confidence 11 33567889999999998876543 33577788875444333333222 35666554
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=83.72 E-value=1.5 Score=45.38 Aligned_cols=34 Identities=35% Similarity=0.403 Sum_probs=29.7
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK 255 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~ 255 (851)
|+|.|.||+|.+|+.|...|.+.| .+|.+..|..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G---~~V~v~~r~~ 34 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG---NKIIIGSRDL 34 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC---CEEEEEEcCH
Confidence 579999999999999999999988 6777777754
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=83.45 E-value=2.1 Score=46.35 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=31.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK 255 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~ 255 (851)
+.|++|+|.|+ |-+|+.+++.|...| .+|++..|..
T Consensus 149 l~gk~v~IiG~-G~iG~avA~~L~~~G---~~V~v~~R~~ 184 (287)
T TIGR02853 149 IHGSNVMVLGF-GRTGMTIARTFSALG---ARVFVGARSS 184 (287)
T ss_pred CCCCEEEEEcC-hHHHHHHHHHHHHCC---CEEEEEeCCH
Confidence 57899999999 669999999999887 5888888864
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=83.28 E-value=4.3 Score=43.98 Aligned_cols=38 Identities=11% Similarity=0.234 Sum_probs=31.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKR 256 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~ 256 (851)
.++++|+|-||+|- ++.++..|...| +.+|+++.|...
T Consensus 122 ~~~k~vlvlGaGGa-arAi~~~l~~~g--~~~i~i~nRt~~ 159 (288)
T PRK12749 122 IKGKTMVLLGAGGA-STAIGAQGAIEG--LKEIKLFNRRDE 159 (288)
T ss_pred cCCCEEEEECCcHH-HHHHHHHHHHCC--CCEEEEEeCCcc
Confidence 47889999999877 899999998765 479999999754
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=83.25 E-value=2.8 Score=45.37 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=31.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK 255 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~ 255 (851)
..+++|+|.||+| .|+.++..|+..| +.+|++++|..
T Consensus 125 ~~~k~vlIlGaGG-aaraia~aL~~~G--~~~I~I~nR~~ 161 (284)
T PRK12549 125 ASLERVVQLGAGG-AGAAVAHALLTLG--VERLTIFDVDP 161 (284)
T ss_pred ccCCEEEEECCcH-HHHHHHHHHHHcC--CCEEEEECCCH
Confidence 4678999999977 9999999999876 47899999974
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=82.98 E-value=8.7 Score=41.89 Aligned_cols=104 Identities=16% Similarity=0.094 Sum_probs=62.7
Q ss_pred EEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEE-EcCCCCCcC
Q psy11859 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHII-EGDILQANL 299 (851)
Q Consensus 221 VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v-~gDi~~~~l 299 (851)
|.|.|| |.+|+.++..|+..+.. .|+++++.+...... ..++. +.. ........+. .+|
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~--eV~L~Di~e~~~~g~--~~dl~-----~~~----~~~~~~~~I~~t~d------ 60 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG--DVVLLDIVEGLPQGK--ALDIS-----QAA----PILGSDTKVTGTND------ 60 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc--EEEEEeCCCcHHHHH--HHHHH-----Hhh----hhcCCCeEEEEcCC------
Confidence 468898 99999999988876532 899999875421111 11111 100 0000111111 122
Q ss_pred CCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcC
Q psy11859 300 GIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMK 351 (851)
Q Consensus 300 gls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~ 351 (851)
++ .+.++|+||-+|+...- +.+..+.+..|+.-.+.+++...+..
T Consensus 61 ------~~-~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~ 106 (300)
T cd01339 61 ------YE-DIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYA 106 (300)
T ss_pred ------HH-HhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 22 35899999999986543 33445677789888888888877764
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >KOG2018|consensus | Back alignment and domain information |
|---|
Probab=82.74 E-value=7.8 Score=41.48 Aligned_cols=118 Identities=21% Similarity=0.189 Sum_probs=64.9
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH-----HHHhcChhhHHHhhhCcccCCCeEE
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-----AEFSKLPVFERLRKECPAQLSRLHI 289 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl-----~~~~~~~~f~~l~~~~~~~~~~v~~ 289 (851)
-+++.-|.|.|++| +|++++..|+|+| |.+|.+++-..-+.+...|- .++ ..|--.-|++......+ +
T Consensus 71 kl~~syVVVVG~Gg-VGSwv~nmL~RSG--~qKi~iVDfdqVSlsSLNrHs~Atl~DV-G~PK~~clkkh~skiaP---w 143 (430)
T KOG2018|consen 71 KLTNSYVVVVGAGG-VGSWVANMLLRSG--VQKIRIVDFDQVSLSSLNRHSCATLADV-GTPKVMCLKKHFSKIAP---W 143 (430)
T ss_pred HhcCcEEEEEecCc-hhHHHHHHHHHhc--CceEEEechhhccHhhhhhhhhhhHhhc-CCchHHHHHHHHHhhCc---c
Confidence 35677899999877 8999999999987 47887776554433332221 111 11222222222222222 1
Q ss_pred EEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceE
Q psy11859 290 IEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVA 355 (851)
Q Consensus 290 v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~ 355 (851)
.+.|-++.-.-.+. .-+.+..++|.|+.|-- |+..-..||++|-.++ ++.
T Consensus 144 ~eIdar~~l~~~~s-~edll~gnPdFvvDciD--------------NidtKVdLL~y~~~~~-l~V 193 (430)
T KOG2018|consen 144 CEIDARNMLWTSSS-EEDLLSGNPDFVVDCID--------------NIDTKVDLLEYCYNHG-LKV 193 (430)
T ss_pred ceecHHHhhcCCCc-hhhhhcCCCCeEeEhhh--------------hhhhhhHHHHHHHHcC-Cce
Confidence 22232221111111 22334457888887752 5566677999999886 654
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=82.67 E-value=2.9 Score=45.30 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=32.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRA 254 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~ 254 (851)
+.||+|.|.|.+|.+|+-++..|++.| ..|.+..|.
T Consensus 157 l~Gk~V~vIG~s~ivG~PmA~~L~~~g---atVtv~~~~ 192 (301)
T PRK14194 157 LTGKHAVVIGRSNIVGKPMAALLLQAH---CSVTVVHSR 192 (301)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCC---CEEEEECCC
Confidence 579999999999999999999999998 678777554
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=82.37 E-value=16 Score=39.89 Aligned_cols=111 Identities=15% Similarity=0.104 Sum_probs=69.8
Q ss_pred ecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcCCCCH
Q psy11859 224 TGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLGIKD 303 (851)
Q Consensus 224 TGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lgls~ 303 (851)
.| +|.||+.++-.|+..+ -+.+|.++++.+..... ...++.... +-....+.+..+|
T Consensus 2 IG-aG~VG~~~a~~l~~~~-l~~el~L~Di~~~~~~g--~a~Dl~~~~---------~~~~~~~~i~~~~---------- 58 (299)
T TIGR01771 2 IG-AGNVGSSTAFALLNQG-IADEIVLIDINKDKAEG--EAMDLQHAA---------SFLPTPKKIRSGD---------- 58 (299)
T ss_pred CC-cCHHHHHHHHHHHhcC-CCCEEEEEeCCCChhhH--HHHHHHHhh---------cccCCCeEEecCC----------
Confidence 35 5999999999988764 45689999986543211 111221110 0011123333222
Q ss_pred HHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 304 SDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 304 ~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
+ ..++++|+|+=+|+..+-+ .+-.+.++.|+.-.+.+.+...+++ .+.+|.+=|
T Consensus 59 --~-~~~~daDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvs 113 (299)
T TIGR01771 59 --Y-SDCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVAT 113 (299)
T ss_pred --H-HHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeC
Confidence 1 2468999999999976543 4556889999999999999998875 455544444
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.32 E-value=2.3 Score=48.51 Aligned_cols=124 Identities=13% Similarity=0.184 Sum_probs=73.5
Q ss_pred hhHHHHHHhhhhhhhhhhhhcccccCCCCCCCCCCccCcccCcccccccccccCccccccccchhhhcCCCEEEEecCcc
Q psy11859 149 FTQEMLSELISHSLYCRQRIKYECHQAPLDLHSATWFTSAANQSVDYVGDVKRGSCECADMGDVARWYAGRSVLVTGGTG 228 (851)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~k~VlVTGatG 228 (851)
.+...+.+|......++-+++...+.+.... +.. ..+.+ + ...+-.-+.|++|+|.|+ |
T Consensus 132 ~~g~~L~~lf~~A~~~aKrVrteT~I~~~~v---Sv~-~~Av~---------l-------a~~~~~~l~~kkvlviGa-G 190 (414)
T PRK13940 132 AIGKELDRVFQKVFATAKRVRSETRIGHCPV---SVA-FSAIT---------L-------AKRQLDNISSKNVLIIGA-G 190 (414)
T ss_pred CchHHHHHHHHHHHHHHHHHHhccCCCCCCc---CHH-HHHHH---------H-------HHHHhcCccCCEEEEEcC-c
Confidence 3456677788788888777776554433221 110 11100 0 011222267899999999 8
Q ss_pred HHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcCCCCHHHHHH
Q psy11859 229 FMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLM 308 (851)
Q Consensus 229 FIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lgls~~~~~~ 308 (851)
=+|+.++..|...|+ ..|++..|.... .+.+. ++.+ ...++ .. +++..
T Consensus 191 ~~a~~va~~L~~~g~--~~I~V~nRt~~r---a~~La------------~~~~----~~~~~-----~~------~~l~~ 238 (414)
T PRK13940 191 QTGELLFRHVTALAP--KQIMLANRTIEK---AQKIT------------SAFR----NASAH-----YL------SELPQ 238 (414)
T ss_pred HHHHHHHHHHHHcCC--CEEEEECCCHHH---HHHHH------------HHhc----CCeEe-----cH------HHHHH
Confidence 899999999998765 689999997421 11121 1111 01111 11 25667
Q ss_pred HhcCccEEEEccccCCc
Q psy11859 309 LQEEVSVVFNGAASLKL 325 (851)
Q Consensus 309 ~~~~vd~ViH~AA~~~~ 325 (851)
++.+.|+||.+-+..++
T Consensus 239 ~l~~aDiVI~aT~a~~~ 255 (414)
T PRK13940 239 LIKKADIIIAAVNVLEY 255 (414)
T ss_pred HhccCCEEEECcCCCCe
Confidence 78899999999987654
|
|
| >KOG2231|consensus | Back alignment and domain information |
|---|
Probab=82.27 E-value=1.1 Score=52.91 Aligned_cols=87 Identities=23% Similarity=0.235 Sum_probs=53.3
Q ss_pred eecCCccccchhhhhhhcc-cccCCcccccccC-----CccCccccChhhHHHHHhhhc-CCCc----cccCccccCccc
Q psy11859 693 TQILPAYLVDFIMVLIRQK-TFENLVRTFQCTY-----PECLKFYAKMSHLKAHLRRHS-GERS----FKCDWQDCKWQF 761 (851)
Q Consensus 693 ~c~~c~~~~~~~~~l~~h~-~~h~~~r~~~C~~-----~~Cgk~F~~~~~L~~H~~~H~-gekp----~~C~~~~C~k~F 761 (851)
.|..| -.|.+...|+.|+ ..|..-.-..|.. -.|.+.| +...|..|++.-- +++. -.|. .|...|
T Consensus 117 ~~~~c-~~~~s~~~Lk~H~~~~H~~~~c~lC~~~~kif~~e~k~Y-t~~el~~h~~~gd~d~~s~rGhp~C~--~C~~~f 192 (669)
T KOG2231|consen 117 ECLHC-TEFKSVENLKNHMRDQHKLHLCSLCLQNLKIFINERKLY-TRAELNLHLMFGDPDDESCRGHPLCK--FCHERF 192 (669)
T ss_pred CCccc-cchhHHHHHHHHHHHhhhhhccccccccceeeeeeeehe-hHHHHHHHHhcCCCccccccCCccch--hhhhhh
Confidence 36666 5666788899997 6775422112210 1133444 3455777766421 2222 3576 799999
Q ss_pred cCchhHHHhhhhcCCCCCccCCCCCC
Q psy11859 762 SRSDELSRHRRSHFGIKPYPCTLCVK 787 (851)
Q Consensus 762 ~~~~~L~~H~r~H~gekp~~C~~Cgk 787 (851)
.....|.+|++.++ |.|..|.+
T Consensus 193 ld~~el~rH~~~~h----~~chfC~~ 214 (669)
T KOG2231|consen 193 LDDDELYRHLRFDH----EFCHFCDY 214 (669)
T ss_pred ccHHHHHHhhccce----eheeecCc
Confidence 99999999998765 56888864
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=82.15 E-value=6.8 Score=41.90 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=25.8
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRA 254 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~ 254 (851)
++|.|.|. |.||+.+++.|++.++++.-+.+.+|.
T Consensus 2 mrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~ 36 (265)
T PRK13304 2 LKIGIVGC-GAIASLITKAILSGRINAELYAFYDRN 36 (265)
T ss_pred CEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence 57999995 999999999998764344445555554
|
|
| >PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A | Back alignment and domain information |
|---|
Probab=81.75 E-value=0.92 Score=29.28 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=11.7
Q ss_pred CccCccccChhhHHHHHhh
Q psy11859 725 PECLKFYAKMSHLKAHLRR 743 (851)
Q Consensus 725 ~~Cgk~F~~~~~L~~H~~~ 743 (851)
+.|++.|.+...+..|++.
T Consensus 4 ~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 4 DICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp TTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCcCCHHHHHHHHCc
Confidence 5566666666666666554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 851 | ||||
| 2ebt_A | 100 | Solution Structure Of Three Tandem Repeats Of Zf-C2 | 5e-19 | ||
| 2wbu_A | 90 | Crystal Structure Of The Zinc Finger Domain Of Klf4 | 8e-19 | ||
| 2jp9_A | 119 | Structure Of The Wilms Tumor Suppressor Protein Zin | 2e-17 | ||
| 2wbs_A | 89 | Crystal Structure Of The Zinc Finger Domain Of Klf4 | 7e-17 | ||
| 2epa_A | 72 | Solution Structure Of The First And Second Zf-C2h2 | 4e-16 | ||
| 2i13_A | 190 | Aart, A Six Finger Zinc Finger Designed To Recogniz | 6e-11 | ||
| 4dqv_A | 478 | Crystal Structure Of Reductase (R) Domain Of Non-Ri | 2e-09 | ||
| 1mey_C | 87 | Crystal Structure Of A Designed Zinc Finger Protein | 2e-09 | ||
| 2ent_A | 48 | Solution Structure Of The Second C2h2-Type Zinc Fin | 3e-09 | ||
| 2gli_A | 155 | Five-Finger GliDNA COMPLEX Length = 155 | 9e-09 | ||
| 2rpc_A | 155 | Solution Structure Of The Tandem Zf-C2h2 Domains Fr | 2e-08 | ||
| 1a1f_A | 90 | Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc | 1e-07 | ||
| 1jk1_A | 90 | Zif268 D20a Mutant Bound To Wt Dna Site Length = 90 | 2e-07 | ||
| 1a1i_A | 90 | Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac | 2e-07 | ||
| 1aay_A | 90 | Zif268 Zinc Finger-Dna Complex Length = 90 | 3e-07 | ||
| 1a1h_A | 90 | Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac | 3e-07 | ||
| 1p47_A | 87 | Crystal Structure Of Tandem Zif268 Molecules Comple | 4e-07 | ||
| 1zaa_C | 87 | Zinc Finger-Dna Recognition: Crystal Structure Of A | 5e-07 | ||
| 1tf3_A | 92 | Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures | 6e-07 | ||
| 2csh_A | 110 | Solution Structure Of Tandem Repeat Of The Zf-C2h2 | 2e-06 | ||
| 1ubd_C | 124 | Co-Crystal Structure Of Human Yy1 Zinc Finger Domai | 3e-06 | ||
| 1llm_C | 88 | Crystal Structure Of A Zif23-Gcn4 Chimera Bound To | 3e-06 | ||
| 1g2d_C | 90 | Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX | 5e-06 | ||
| 1g2f_C | 90 | Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX | 5e-06 | ||
| 2yt9_A | 95 | Solution Structure Of C2h2 Type Zinc Finger Domain | 6e-06 | ||
| 2dmd_A | 96 | Solution Structure Of The N-Terminal C2h2 Type Zinc | 3e-05 | ||
| 1f2i_G | 73 | Cocrystal Structure Of Selected Zinc Finger Dimer B | 4e-05 | ||
| 2udp_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 5e-05 | ||
| 1tf6_A | 190 | Co-crystal Structure Of Xenopus Tfiiia Zinc Finger | 6e-05 | ||
| 1kvr_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 7e-05 | ||
| 1kvs_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 8e-05 | ||
| 1kvu_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 9e-05 | ||
| 1a9y_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 1e-04 | ||
| 1lrj_A | 338 | Crystal Structure Of E. Coli Udp-Galactose 4-Epimer | 2e-04 | ||
| 2cot_A | 77 | Solution Structure Of The First And Second Zf-C2h2 | 2e-04 | ||
| 1lrk_A | 338 | Crystal Structure Of Escherichia Coli Udp-Galactose | 2e-04 | ||
| 1kvq_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 3e-04 | ||
| 1kvt_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 3e-04 | ||
| 1a9z_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 5e-04 |
| >pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100 | Back alignment and structure |
|
| >pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90 | Back alignment and structure |
|
| >pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119 | Back alignment and structure |
|
| >pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89 | Back alignment and structure |
|
| >pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains From Human Krueppel-Like Factor 10 Length = 72 | Back alignment and structure |
|
| >pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190 | Back alignment and structure |
|
| >pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal Peptide Synthetase From Mycobacterium Tuberculosis Length = 478 | Back alignment and structure |
|
| >pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87 | Back alignment and structure |
|
| >pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger Domain From Human Krueppel-Like Factor 15 Length = 48 | Back alignment and structure |
|
| >pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155 | Back alignment and structure |
|
| >pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155 | Back alignment and structure |
|
| >pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90 | Back alignment and structure |
|
| >pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90 | Back alignment and structure |
|
| >pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90 | Back alignment and structure |
|
| >pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90 | Back alignment and structure |
|
| >pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90 | Back alignment and structure |
|
| >pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87 | Back alignment and structure |
|
| >pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87 | Back alignment and structure |
|
| >pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures Length = 92 | Back alignment and structure |
|
| >pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110 | Back alignment and structure |
|
| >pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124 | Back alignment and structure |
|
| >pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna Length = 88 | Back alignment and structure |
|
| >pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90 | Back alignment and structure |
|
| >pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90 | Back alignment and structure |
|
| >pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95 | Back alignment and structure |
|
| >pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96 | Back alignment and structure |
|
| >pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To Dna Length = 73 | Back alignment and structure |
|
| >pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain Bound To The 5s Ribosomal Rna Gene Internal Control Region Length = 190 | Back alignment and structure |
|
| >pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Glucose Length = 338 | Back alignment and structure |
|
| >pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain Of Zinc Finger Protein 435 Length = 77 | Back alignment and structure |
|
| >pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose 4-Epimerase Mutant Y299c Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Galactose Length = 338 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 2e-43
Identities = 70/337 (20%), Positives = 114/337 (33%), Gaps = 54/337 (16%)
Query: 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLR 277
R+VL+TG TGF+G+ L+ +LLR G++ L RA+ + RL + E LR
Sbjct: 73 LRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLR 132
Query: 278 KECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANT 337
RL ++ GD + +LG+ L E V ++ + AA + E N
Sbjct: 133 HFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAF-PYHELFGPNV 191
Query: 338 RGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETI 397
GT L+ IAL KL F + STA V A D +
Sbjct: 192 AGTAELIRIALTT-KLKPFTYVSTAD----------------VGAAIEPSAFTEDADIRV 234
Query: 398 KQLTPKILGPHPNSYTFTKRLTETLVDEY--KTKLPVVIVRPSIVL----PSFQEPVPGW 451
T + G Y +K E L+ E LPV + R ++L + Q + W
Sbjct: 235 ISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDW 294
Query: 452 VDSL-------------NGPVGVLVASGKG---------VVRSMI------LNDLSTETQ 483
V + + V ++
Sbjct: 295 VTRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFA 354
Query: 484 VFNISSNEVEAITWGEIISRGKQLIYQYPLEAGLWYP 520
+++ + + I E + + YP+ +
Sbjct: 355 TYHVMNPHDDGIGLDEYVDWLIE--AGYPIRRIDDFA 389
|
| >2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 7e-35
Identities = 46/116 (39%), Positives = 58/116 (50%), Gaps = 30/116 (25%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777
R C YP C K Y K SHLKAHLR H+GE+ +KC W+ C W+F+RSDEL+RH R H G
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Query: 778 KPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVHE 833
KP+ C +C + F HLA H+K H+
Sbjct: 74 KPFQCGVCNRS-----------------FSRSD-------------HLALHMKRHQ 99
|
| >2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 3e-33
Identities = 44/115 (38%), Positives = 54/115 (46%), Gaps = 30/115 (26%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777
T C Y C K Y K SHLKAHLR H+GE+ + CDW C W+F+RSDEL+RH R H G
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 778 KPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVH 832
+P+ C C + F HLA H+K H
Sbjct: 64 RPFQCQKCDRA-----------------F-------------SRSDHLALHMKRH 88
|
| >2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 2e-15
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHF 775
+ C + C +A+ L H R+H+G R F+C C FSRSD L+ H + HF
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ--KCDRAFSRSDHLALHMKRHF 89
|
| >2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 2e-28
Identities = 33/57 (57%), Positives = 43/57 (75%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSH 774
R+ C++P C K Y K SHLKAH R H+GE+ F C W+ C+ +F+RSDELSRHRR+H
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
|
| >2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 1e-12
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 735 SHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTL--CVKK 788
S S RS C C + +S L H R+H G KP+ C+ C ++
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERR 58
|
| >2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 5e-27
Identities = 18/68 (26%), Positives = 29/68 (42%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
+ C + C K + K + LK H H+ + ++C + C +FS L RH + H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 780 YPCTLCVK 787
C
Sbjct: 62 KKDDSCSF 69
|
| >2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 2e-12
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRH-RRSH 774
++C + C K ++ S LK H + H+G K D C + +H H
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDD--SCSFVGKTWTLYLKHVAECH 85
|
| >1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 2e-23
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 733 KMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKK 788
M++L ++ R + C + C +FSRSDEL+RH R H G KP+ C +C++
Sbjct: 5 PMNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRN 58
|
| >1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 2e-16
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSH 774
R + C C + +++ L H+R H+G++ F+C C FSRSD L+ H R+H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCR--ICMRNFSRSDHLTTHIRTH 72
|
| >2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 2e-22
Identities = 24/45 (53%), Positives = 30/45 (66%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ F C W C W+FSRSDELSRHRRSH G+KP +
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
|
| >2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-07
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753
+ F CT+P C +++ L H R HSG +
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
|
| >2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 1e-21
Identities = 44/126 (34%), Positives = 62/126 (49%), Gaps = 26/126 (20%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
F C YP C K Y K+SHL+ H R+H+GE+ ++CD++DC+ +FSRSD+L RH+R H G+KP
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 780 YPCTLCVKK-SLLAILNC---------PHE---AECTPTFKHRAEKTSTPGPSMCKRHLA 826
+ C C +K S L P C F L
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSD-------------ELV 113
Query: 827 KHLKVH 832
+H +H
Sbjct: 114 RHHNMH 119
|
| >2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 2e-08
Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 28/88 (31%)
Query: 745 SGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTP 804
S +R F C + C ++ + L H R H G KPY C +C
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCD---------------FKDCER 46
Query: 805 TFKHRAEKTSTPGPSMCKRHLAKHLKVH 832
F L +H + H
Sbjct: 47 RFSRSD-------------QLKRHQRRH 61
|
| >2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 7e-20
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
F C +P C K +A+ +LK H R H+GE+ FKC+++ C +F+ S + +H H K
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS 150
Query: 780 YPCT 783
P +
Sbjct: 151 GPSS 154
|
| >2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 3e-16
Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 28/108 (25%)
Query: 725 PECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTL 784
P K + L H+R H+GE+ F C + C F+RS+ L H+R+H G KP+ C
Sbjct: 66 PREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEF 125
Query: 785 CVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVH 832
C F + KH+ VH
Sbjct: 126 ---------------EGCDRRFAN-------------SSDRKKHMHVH 145
|
| >2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 9e-11
Identities = 16/107 (14%), Positives = 24/107 (22%), Gaps = 23/107 (21%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785
+ + + S + C FS EL H P
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHV 59
Query: 786 VKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVH 832
CP +FK + L H++VH
Sbjct: 60 CYWE-----ECP---REGKSFKAKY-------------KLVNHIRVH 85
|
| >2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 2e-19
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLR-RHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
C +P C + ++ +L H + +H ++SF C C F+ L H + H +
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 779 PYPCTLCVK 787
Y C
Sbjct: 68 DYICEFSGP 76
|
| >2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 4e-11
Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 29/90 (32%)
Query: 744 HSGERSFKCDWQDCKWQFSRSDELSRHRR-SHFGIKPYPCTLCVKKSLLAILNCPHEAEC 802
SG CD+ C FS L+ H++ H K + C E C
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCP---------------EPAC 46
Query: 803 TPTFKHRAEKTSTPGPSMCKRHLAKHLKVH 832
+F K+HL +H+K+H
Sbjct: 47 GKSFNF-------------KKHLKEHMKLH 63
|
| >2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 4e-07
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753
++F C P C K + HLK H++ HS R + C+
Sbjct: 37 KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 72
|
| >2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 9e-19
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 29/114 (25%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRH-RRSHFGIK 778
+CT+ C K Y+++ +LK HLR H+GE+ + C+ + C FS + + ++H R+H K
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK 127
Query: 779 PYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVH 832
PY C L CT + PS L KH+K
Sbjct: 128 PYVCKL---------------PGCTKRYTD---------PS----SLRKHVKTV 153
|
| >2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 3e-11
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 711 KTF---ENL---VRT------FQCTYPECLKFYAKMSHLKAHLRR-HSGERSFKCDWQDC 757
K++ ENL +R+ + C + C K ++ S H R HS E+ + C C
Sbjct: 77 KSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGC 136
Query: 758 KWQFSRSDELSRHRRSHFG 776
+++ L +H ++ G
Sbjct: 137 TKRYTDPSSLRKHVKTVHG 155
|
| >2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 15/84 (17%), Positives = 22/84 (26%), Gaps = 28/84 (33%)
Query: 752 CDWQDCKWQFSRSDELSRH---RRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKH 808
C W C +F ++L H H K + C C FK
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWG---------GCS---RELRPFKA 51
Query: 809 RAEKTSTPGPSMCKRHLAKHLKVH 832
+ L H++ H
Sbjct: 52 QY-------------MLVVHMRRH 62
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 1e-18
Identities = 42/262 (16%), Positives = 72/262 (27%), Gaps = 72/262 (27%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIG-KVYILCRAKRGLTPKARLAEFSKLPVFERLRKE 279
V G TG +G + + G + ++ R P +++ + L
Sbjct: 16 YAVLGATGLLGHHAARAIRAA----GHDLVLIHR------PSSQIQRLAYLEP------- 58
Query: 280 CPAQLSRLHIIEGDILQANLGIKDSDLLMLQ-EEVSVVFNGAASLKLEAELKEN-VAANT 337
++L D L + V A + VA+
Sbjct: 59 --------ECRVAEML-------DHAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASAL 103
Query: 338 RGTQRLLDIALKM--KKLVAFIHFSTA---FCHPDQKVLEEKLYPSPVSPHDIMRAMEWM 392
T L+ +++ + +A HP E L+ +
Sbjct: 104 GQTNPFYAACLQARVPRIL---YVGSAYAMPRHPQGLPGHEGLFYDSLP----------- 149
Query: 393 DDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY-KTKLPVVIVRPSIVL-PSFQEPVPG 450
+SY K + E + LPVVI P +VL P G
Sbjct: 150 --------------SGKSSYVLCKWALDEQAREQARNGLPVVIGIPGMVLGELDIGPTTG 195
Query: 451 --WVDSLNGPVGVLVASGKGVV 470
NG + VA + V+
Sbjct: 196 RVITAIGNGEMTHYVAGQRNVI 217
|
| >1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 6e-17
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 28/113 (24%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
+ C++ +C Y K L+AHL +H+GE+ F C + C+ F+ L+RH +H G K
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 72
Query: 780 YPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVH 832
+ C C F +A ++ KH
Sbjct: 73 FTCD---------------SDGCDLRFTTKA-------------NMKKHFNRF 97
|
| >1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 5e-13
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
+ C + C K + K + LK H H+ + ++C + C +FS L RH + H G
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 164
Query: 780 YPCTLC 785
C
Sbjct: 165 KKDDSC 170
|
| >1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 1e-12
Identities = 29/122 (23%), Positives = 40/122 (32%), Gaps = 31/122 (25%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIK- 778
F C C K + + HL H H+GE++F CD C +F+ + +H IK
Sbjct: 43 FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKI 102
Query: 779 -PYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVHERQK- 836
Y C H C FK L H H +Q
Sbjct: 103 CVYVC---------------HFENCGKAFKKHN-------------QLKVHQFSHTQQLP 134
Query: 837 YK 838
Y+
Sbjct: 135 YE 136
|
| >1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 8e-11
Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 28/94 (29%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLLAILNCPH 798
+ + C + DC ++++ +L H H G KP+PC
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPC---------------K 46
Query: 799 EAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVH 832
E C F HL +H H
Sbjct: 47 EEGCEKGFTSLH-------------HLTRHSLTH 67
|
| >1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 7e-17
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
+ C C + +++ L H+R H+G++ F+C C FSRSD L+ H R+H G KP
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCR--ICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 780 YPCTLCVK 787
+ C +C +
Sbjct: 63 FACDICGR 70
|
| >1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90 | Back alignment and structure |
|---|
Score = 55.9 bits (136), Expect = 5e-10
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 24/101 (23%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKK-SLLAILNC--------- 796
ER + C + C +FS+S L+RH R H G KP+ C +C++ S L
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 797 PHE-AECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVHERQK 836
P C F +H K+H RQK
Sbjct: 62 PFACDICGRKFARSD-------------ERKRHTKIHLRQK 89
|
| >1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 3e-16
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 717 VRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFG 776
++ FQC C++ +++ HL H+R H+GE+ F CD C +F+RSDE RHR
Sbjct: 1 MKPFQCR--ICMRNFSRSDHLTTHIRTHTGEKPFACD--ICGRKFARSDERKRHRDIQ-H 55
Query: 777 IKPYPCTLCVK 787
I P +
Sbjct: 56 ILPILEDKVEE 66
|
| >1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-06
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 8/62 (12%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHR---RSHFG 776
F C C + +A+ K H D + S++ L + G
Sbjct: 32 FACD--ICGRKFARSDERKRHRDIQ-HILPILED--KVEELLSKNYHLENEVARLKKLVG 86
Query: 777 IK 778
+
Sbjct: 87 ER 88
|
| >1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 5e-16
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
FQCT+ C K ++ +L+ H+R H+G+R + C + C +F++S L H +H K
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Query: 780 Y 780
Sbjct: 123 N 123
|
| >1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 6e-15
Identities = 37/138 (26%), Positives = 51/138 (36%), Gaps = 34/138 (24%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777
RT C + C K + S ++ HL H G R C +C F S +L RH+ H G
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCA--ECGKAFVESSKLKRHQLVHTGE 60
Query: 778 KPYPCTL--CVKK-SLLAILN-------------CPHEAECTPTFKHRAEKTSTPGPSMC 821
KP+ CT C K+ SL L CP + C F
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFD-GCNKKFAQST----------- 108
Query: 822 KRHLAKHLKVHERQK-YK 838
+L H+ H + K +
Sbjct: 109 --NLKSHILTHAKAKNNQ 124
|
| >1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 5e-07
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 29/100 (29%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKK-SLLAILN---------- 795
R+ C + C F + + +H +H G + + C C K + L
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 796 ---CPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVH 832
C E C F +L H+++H
Sbjct: 62 PFQCTFE-GCGKRFSLDF-------------NLRTHVRIH 87
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.9 bits (183), Expect = 8e-14
Identities = 85/609 (13%), Positives = 168/609 (27%), Gaps = 153/609 (25%)
Query: 283 QLSRLHIIEGDILQANLG--IKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTR-- 338
+ DIL + + D +Q+ + + + E+ + +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS-------KEEIDHIIMSKDAVS 62
Query: 339 GTQRLLDIAL-KMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETI 397
GT RL L K +++V F + K L + P + R D
Sbjct: 63 GTLRLFWTLLSKQEEMVQ--KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 398 KQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDSLNG 457
++ + R + + L + +RP+ V ++G
Sbjct: 121 N--DNQVFAKY-----NVSR--LQPYLKLRQAL--LELRPA-----------KNV-LIDG 157
Query: 458 PVGVLVASGKGVVRSMILNDLSTET----QVFNISSNEVEAITWGEIISRGKQLIYQYPL 513
+G SGK V + + ++F ++ + ++ ++L+YQ
Sbjct: 158 VLG----SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN--SPETVLEMLQKLLYQID- 210
Query: 514 EAGLWYPNGQIRSNRFWHYFFVIFTQILPAYLVDFIMVLIRQKTFLV--RVQN-RIWLGM 570
PN RS+ + I + A L + + LV VQN + W
Sbjct: 211 ------PNWTSRSDHSSNIKLRI--HSIQAELRRLLKSKPYENCLLVLLNVQNAKAW--- 259
Query: 571 HLLEYF--------TTRNWDFKNKRLLALHDNIS-EKDKQTFYIANIDVNIDDYLKTIIL 621
F TTR + A +IS + T D +K+++L
Sbjct: 260 ---NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT--------PDEVKSLLL 308
Query: 622 GARQYCLKEPLTTLPKARRQIKFLYVLDRIGHALILFLLGSVPKLISTTGLWYPNGQIRS 681
L LP+ P+ +S +G
Sbjct: 309 K----YLDCRPQDLPREVLTTN--------------------PRRLSIIAESIRDGLATW 344
Query: 682 NRFWHYFFVIFTQIL--------PA----YLVDFIM----VLIRQKTFENLVRTFQCTYP 725
+ + H T I+ PA + I + F
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI--WFDVIKS 402
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785
+ + K+ H + + + E + + + +E + HR + Y
Sbjct: 403 DVMVVVNKL-HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI---VDHYNIPKT 458
Query: 786 VKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVHER-QKYKMMMK-- 842
+ ++ H+ HLK E ++ +
Sbjct: 459 F---------DSDDLIPPYLDQYFYS------------HIGHHLKNIEHPERMTLFRMVF 497
Query: 843 -SMRKMKNK 850
R ++ K
Sbjct: 498 LDFRFLEQK 506
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 3e-07
Identities = 100/702 (14%), Positives = 201/702 (28%), Gaps = 243/702 (34%)
Query: 114 QEDSTKTIVEHNLPDQTDVRGIHETDFKFTIKYREFTQEMLS-ELISHSLYCRQRIKYEC 172
+ K I+ + D K ++ + +LS E I H + + +
Sbjct: 14 HQYQYKDILSVFEDAF-----VDNFDCKDV---QDMPKSILSKEEIDHIIMSKDAVS--- 62
Query: 173 HQAPLDLHSATWFTSAANQSVDYVGDVKRGSCECADMGDVARWYAGRSVLVTGGTGFMGK 232
T + +V +V R + +
Sbjct: 63 ---GTLRLFWTLLSKQEEMVQKFVEEVLR-----INYK----F----------------- 93
Query: 233 VLLEKLLRSCPD---IGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHI 289
L+ + + ++YI R + + F+K V R + +L +
Sbjct: 94 -LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ----VFAKYNVS---RLQPYLKLRQA-- 143
Query: 290 IEGDILQANLGIKDSDLLMLQEEVSVVFNGAA-----SLKLEAELKENVAANTRGTQRLL 344
LL L+ +V+ +G + L+ + Q +
Sbjct: 144 ----------------LLELRPAKNVLIDGVLGSGKTWVALD-------VCLSYKVQCKM 180
Query: 345 DIALKMKKLVAFIHFSTAFCHPDQKVLE--EKLY----PSPVSPHDIMRA----MEWMDD 394
D + +++ C+ + VLE +KL P+ S D + +
Sbjct: 181 DFK------IFWLNLKN--CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 395 ETIKQLTPKILGPHPNSYTFTKRLTETLV-DEYKTKLPVVIVRPSIVLPSFQEPVPGWVD 453
E + L K P+ N LV V+ + +F
Sbjct: 233 ELRRLLKSK---PYENCL---------LVLLN---------VQNAKAWNAF--------- 262
Query: 454 SLNGPVGVLVASGKGVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQLIYQY-- 511
N +L+ + R + D + +IS + K L+ +Y
Sbjct: 263 --NLSCKILLTT-----RFKQVTDFLSAATTTHISLDHHS---MTLTPDEVKSLLLKYLD 312
Query: 512 ------PLEA-----------GLWYPNGQIRSNRFWHYF--------------------- 533
P E +G + + H
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 534 -----FVIF-------TQIL-------PAYLVDFIMVLIRQKTFLVRVQNRIWLGMHLLE 574
+F T +L V ++ + + + + + + + +
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI- 431
Query: 575 YFTTRNWDFKNKRLLALHDNISEKDK--QTFYIANI-DVNIDDYLKTIILGARQYCLKEP 631
Y + K + ALH +I + +TF ++ +D Y + I G + LK
Sbjct: 432 YLELK---VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI-G---HHLKN- 483
Query: 632 LTTLPKARRQIKF--LYVLD-RIGHALILFLLGSVPKLISTTGLWYPNGQIRSN----RF 684
+ R F ++ LD R FL K+ + W +G I + +F
Sbjct: 484 ---IEHPERMTLFRMVF-LDFR-------FLEQ---KIRHDSTAWNASGSILNTLQQLKF 529
Query: 685 WHYFFV----IFTQILPAYLVDFIM----VLIRQKTFENLVR 718
+ + + +++ A L DF+ LI K + +L+R
Sbjct: 530 YKPYICDNDPKYERLVNAIL-DFLPKIEENLICSK-YTDLLR 569
|
| >2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95 | Back alignment and structure |
|---|
Score = 66.7 bits (164), Expect = 1e-13
Identities = 27/70 (38%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFG--I 777
C C K + + HL H HSGE+ + C C +F R D +S H RSH G
Sbjct: 8 VACE--ICGKIFRDVYHLNRHKLSHSGEKPYSCP--VCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 778 KPYPCTLCVK 787
KPY C C K
Sbjct: 64 KPYICQSCGK 73
|
| >2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 3e-08
Identities = 22/98 (22%), Positives = 31/98 (31%), Gaps = 35/98 (35%)
Query: 744 HSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECT 803
SG C+ C F L+RH+ SH G KPY C +C
Sbjct: 2 SSGSSGVACE--ICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGL---------------- 43
Query: 804 PTFKHRAEKTSTPGPSMCKRHLAKHLKVH--ERQK-YK 838
FK + ++ H++ H K Y
Sbjct: 44 -RFKRKD-------------RMSYHVRSHDGSVGKPYI 67
|
| >2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 2e-06
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERS--FKCDWQDCKWQFSRSDELSRH-RRSHFG 776
+ C C + + + H+R H G + C Q C FSR D L+ H ++ H G
Sbjct: 36 YSCP--VCGLRFKRKDRMSYHVRSHDGSVGKPYIC--QSCGKGFSRPDHLNGHIKQVHSG 91
Query: 777 IK 778
Sbjct: 92 PS 93
|
| >2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82 | Back alignment and structure |
|---|
Score = 64.8 bits (159), Expect = 3e-13
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 719 TFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
+F C C K + + S L HL HS R + C Q C +F + ++ +H H G K
Sbjct: 1 SFDCK--ICGKSFKRSSTLSTHLLIHSDTRPYPC--QYCGKRFHQKSDMKKHTFIHTGEK 56
Query: 779 PYPCTLCVK 787
P+ C +C K
Sbjct: 57 PHKCQVCGK 65
|
| >2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 2e-07
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFG 776
+ C C K + + S +K H H+GE+ KC Q C FS+S L H R H G
Sbjct: 30 YPCQ--YCGKRFHQKSDMKKHTFIHTGEKPHKC--QVCGKAFSQSSNLITHSRKHTG 82
|
| >2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 2e-05
Identities = 20/84 (23%), Positives = 25/84 (29%), Gaps = 32/84 (38%)
Query: 749 SFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKH 808
SF C C F RS LS H H +PYPC C F
Sbjct: 1 SFDCK--ICGKSFKRSSTLSTHLLIHSDTRPYPCQ-----------------YCGKRFHQ 41
Query: 809 RAEKTSTPGPSMCKRHLAKHLKVH 832
++ + KH +H
Sbjct: 42 KS-------------DMKKHTFIH 52
|
| >2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96 | Back alignment and structure |
|---|
Score = 65.1 bits (160), Expect = 4e-13
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785
C K +++ LK H+R H+G + +KC C + + S L++H R H +P+ C +C
Sbjct: 13 VCGKCFSRKDKLKTHMRCHTGVKPYKCK--TCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 786 VK 787
Sbjct: 71 PY 72
|
| >2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96 | Back alignment and structure |
|---|
Score = 64.0 bits (157), Expect = 8e-13
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
C A S L HLR HS ER FKC C + S +L+ H RSH G
Sbjct: 41 TCDYAAADSSSLNKHLRIHSDERPFKCQ--ICPYASRNSSQLTVHLRSHTGDSGPSS 95
|
| >2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 4e-13
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 736 HLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFG--IKPYPCTLCVK 787
+ R HSGE+ ++C C +F++S + H + + C C
Sbjct: 2 SSGSSGRTHSGEKPYECY--ICHARFTQSGTMKMHILQKHTENVAKFHCPHCDT 53
|
| >2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 2e-11
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERS--FKCDWQDCKWQFSRSDELSRH-RRSHFG 776
++C C + + +K H+ + E F C C +R +L H R+ H
Sbjct: 16 YECY--ICHARFTQSGTMKMHILQKHTENVAKFHCP--HCDTVIARKSDLGVHLRKQHSY 71
Query: 777 IKPY 780
P
Sbjct: 72 SGPS 75
|
| >2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110 | Back alignment and structure |
|---|
Score = 63.6 bits (156), Expect = 2e-12
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
+ C +C K + S H+ H G R + C C +F L H + H GIKP
Sbjct: 11 YPC---QCGKSFTHKSQRDRHMSMHLGLRPYGCG--VCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 780 YPCTLCVK 787
Y C +C K
Sbjct: 66 YECNICAK 73
|
| >2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110 | Back alignment and structure |
|---|
Score = 59.0 bits (144), Expect = 7e-11
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
+ C C K + HL H++ H+G + ++C+ C +F D HR K
Sbjct: 38 YGCG--VCGKKFKMKHHLVGHMKIHTGIKPYECN--ICAKRFMWRDSF--HRHVTSCTKS 91
Query: 780 YPCTLCVK 787
Y +
Sbjct: 92 YEAAKAEQ 99
|
| >2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110 | Back alignment and structure |
|---|
Score = 50.9 bits (123), Expect = 4e-08
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 34/98 (34%)
Query: 742 RRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAE 801
SG++ + C C F+ + RH H G++PY C +C K
Sbjct: 3 SGSSGDKLYPC---QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGK-------------- 45
Query: 802 CTPTFKHRAEKTSTPGPSMCKRHLAKHLKVHERQK-YK 838
FK + HL H+K+H K Y+
Sbjct: 46 ---KFKMKH-------------HLVGHMKIHTGIKPYE 67
|
| >2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106 | Back alignment and structure |
|---|
Score = 63.6 bits (156), Expect = 2e-12
Identities = 30/120 (25%), Positives = 38/120 (31%), Gaps = 35/120 (29%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
F C C + + K +L H R H+ ER + CD C F R D L HR H KP
Sbjct: 18 FICK--FCGRHFTKSYNLLIHERTHTDERPYTCD--ICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 780 YPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVHERQK-YK 838
+ C EC F LA H +H +
Sbjct: 74 FKCQ-----------------ECGKGFCQSR-------------TLAVHKTLHMQTSSPT 103
|
| >2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106 | Back alignment and structure |
|---|
Score = 61.3 bits (150), Expect = 1e-11
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
+ C C K + + HL+ H HS E+ FKC +C F +S L+ H+ H
Sbjct: 46 YTCD--ICHKAFRRQDHLRDHRYIHSKEKPFKCQ--ECGKGFCQSRTLAVHKTLHMQTSS 101
Query: 780 YPCT 783
Sbjct: 102 PTAA 105
|
| >1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 4e-12
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
+C+ EC + + L+ H R H +R FKC+ C + + LS+H + G
Sbjct: 10 EKCS--ECSYSCSSKAALRIHERIHCTDRPFKCN--YCSFDTKQPSNLSKHMKKFHGDMS 65
Query: 780 YPCT 783
P +
Sbjct: 66 GPSS 69
|
| >1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70 | Back alignment and structure |
|---|
Score = 54.0 bits (131), Expect = 1e-09
Identities = 16/77 (20%), Positives = 23/77 (29%), Gaps = 16/77 (20%)
Query: 742 RRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVK----KSLLAILNCP 797
S KC +C + S L H R H +P+ C C S L+
Sbjct: 2 SSGSSGHPEKCS--ECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSK---- 55
Query: 798 HEAECTPTFKHRAEKTS 814
H K + +
Sbjct: 56 HMK------KFHGDMSG 66
|
| >1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A Length = 31 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 6e-12
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 748 RSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
R F C W C +F+RSDEL RH+R+H G K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
|
| >1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A Length = 31 | Back alignment and structure |
|---|
Score = 37.6 bits (88), Expect = 3e-04
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGER 748
R F CT+ C K + + L+ H R H+GE+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
|
| >2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 7e-12
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRR---HSGERSFKCDWQDCKWQFSRSDELSRHRRSHFG 776
F+C +C K Y + +L H R + E+ F C C+ F R EL H SH G
Sbjct: 36 FECP--KCGKCYFRKENLLEHEARNCMNRSEQVFTCS--VCQETFRRRMELRLHMVSHTG 91
Query: 777 IKPYPCTLCVK 787
PY C+ C +
Sbjct: 92 EMPYKCSSCSQ 102
|
| >2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 7e-11
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRS---HFG 776
+C C K + +LK H R+H+GE+ F+C C + R + L H +
Sbjct: 8 VECP--TCHKKFLSKYYLKVHNRKHTGEKPFECP--KCGKCYFRKENLLEHEARNCMNRS 63
Query: 777 IKPYPCTLCVK 787
+ + C++C +
Sbjct: 64 EQVFTCSVCQE 74
|
| >2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 5e-08
Identities = 26/102 (25%), Positives = 34/102 (33%), Gaps = 27/102 (26%)
Query: 744 HSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVK----KSLLAILNCPHE 799
SG +C C +F L H R H G KP+ C C K K L HE
Sbjct: 2 SSGSSGVECP--TCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLE----HE 55
Query: 800 AECTPTFKHRAEKTSTPGPSMC---------KRHLAKHLKVH 832
A +R+E+ C + L H+ H
Sbjct: 56 ARNC---MNRSEQ-----VFTCSVCQETFRRRMELRLHMVSH 89
|
| >2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 7e-12
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLR--RHSGERSFKCDWQDCKWQFSRSDELSRHRRSHF 775
T++C C + Y +S+ H + + C C +F+R D ++ H +
Sbjct: 9 HTYRCK--VCSRVYTHISNFCRHYVTSHKRNVKVYPCP--FCFKEFTRKDNMTAHVKIIH 64
Query: 776 GI 777
I
Sbjct: 65 KI 66
|
| >2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 1e-10
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 742 RRHSGERSFKCDWQDCKWQFSRSDELSRHRRS--HFGIKPYPCTLCVKK 788
GE +++C C ++ RH + +K YPC C K+
Sbjct: 3 FTKEGEHTYRCK--VCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKE 49
|
| >1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 7e-12
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERS----FKCDWQDCKWQFSRSDELSRHRRSHF 775
+ C+ C K + + L H +R+ F C C F+R + ++RH +
Sbjct: 16 YACS--HCDKTFRQKQLLDMHFKRYHDPNFVPAAFVC--SKCGKTFTRRNTMARHADNCA 71
Query: 776 GIKPYPCTLCVK 787
G
Sbjct: 72 GPDGVEGENSGP 83
|
| >1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-08
Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 36/101 (35%)
Query: 736 HLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSH----FGIKPYPCTLCVKKSLL 791
+ R H+GE+ + C C F + L H + + F + C+
Sbjct: 2 SSGSSGRTHTGEKPYACS--HCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCS-------- 51
Query: 792 AILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVH 832
+C TF R +A+H
Sbjct: 52 ---------KCGKTFTRRN-------------TMARHADNC 70
|
| >2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 8e-12
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRR-HSGERS---FKCDWQDCKWQ---FSRSDELSRH 770
C + ++ M L H+ H G C W++C + F +L H
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Query: 771 RRSHFGIKPYPCT 783
R H G K P +
Sbjct: 82 IRVHTGEKSGPSS 94
|
| >2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 1e-11
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 735 SHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVK 787
H H ++ +KCD C+ F L+ H+ H G KPY C +C
Sbjct: 3 HHHHHHSHMTHSDKPYKCD--RCQASFRYKGNLASHKTVHTGEKPYRCNICGA 53
|
| >2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74 | Back alignment and structure |
|---|
Score = 56.3 bits (137), Expect = 2e-10
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPY 780
C + +L +H H+GE+ ++C+ C QF+R L H R H G KPY
Sbjct: 22 RCQASFRYKGNLASHKTVHTGEKPYRCN--ICGAQFNRPANLKTHTRIHSGEKPY 74
|
| >2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190 | Back alignment and structure |
|---|
Score = 63.2 bits (155), Expect = 2e-11
Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 37/135 (27%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
+ C EC K +++ HL H R H+GE+ +KC +C FS +L+RH+R+H G KP
Sbjct: 22 YACP--ECGKSFSRSDHLAEHQRTHTGEKPYKCP--ECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 780 YPCTLCVK----KSLLAILNCPHE-----------AECTPTFKHRAEKTSTPGPSMCKRH 824
Y C C K ++ L H+ EC +F A H
Sbjct: 78 YKCPECGKSFSQRANLRA----HQRTHTGEKPYACPECGKSFSQLA-------------H 120
Query: 825 LAKHLKVHERQK-YK 838
L H + H +K YK
Sbjct: 121 LRAHQRTHTGEKPYK 135
|
| >2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 3e-11
Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 36/128 (28%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
++C EC K ++ L H R H+GE+ +KC +C FS+ L H+R+H G KP
Sbjct: 50 YKCP--ECGKSFSDKKDLTRHQRTHTGEKPYKCP--ECGKSFSQRANLRAHQRTHTGEKP 105
Query: 780 YPCTLCVK----KSLLAILNCPHE-----------AECTPTFKHRAEKTSTPGPSMCKRH 824
Y C C K + L H+ EC +F +
Sbjct: 106 YACPECGKSFSQLAHLRA----HQRTHTGEKPYKCPECGKSFSRED-------------N 148
Query: 825 LAKHLKVH 832
L H + H
Sbjct: 149 LHTHQRTH 156
|
| >2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190 | Back alignment and structure |
|---|
Score = 61.3 bits (150), Expect = 6e-11
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
+ C EC K +++++HL+AH R H+GE+ +KC +C FSR D L H+R+H G KP
Sbjct: 106 YACP--ECGKSFSQLAHLRAHQRTHTGEKPYKCP--ECGKSFSREDNLHTHQRTHTGEKP 161
Query: 780 YPCTLCVK 787
Y C C K
Sbjct: 162 YKCPECGK 169
|
| >2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190 | Back alignment and structure |
|---|
Score = 57.8 bits (141), Expect = 9e-10
Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 34/113 (30%)
Query: 735 SHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVK----KSL 790
S A GE+ + C +C FSRSD L+ H+R+H G KPY C C K K
Sbjct: 7 SSSVAQAALEPGEKPYACP--ECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKD 64
Query: 791 LAILNCPHE-----------AECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVH 832
L H+ EC +F RA +L H + H
Sbjct: 65 LTR----HQRTHTGEKPYKCPECGKSFSQRA-------------NLRAHQRTH 100
|
| >2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190 | Back alignment and structure |
|---|
Score = 52.4 bits (127), Expect = 8e-08
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
++C EC K +++ +L H R H+GE+ +KC +C FSR D L+ H+R+H G K
Sbjct: 134 YKCP--ECGKSFSREDNLHTHQRTHTGEKPYKCP--ECGKSFSRRDALNVHQRTHTGKKT 189
|
| >1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens} Length = 37 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-11
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGER 748
+ C C K Y K SHL+AHLR H+GER
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
|
| >2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77 | Back alignment and structure |
|---|
Score = 58.6 bits (143), Expect = 4e-11
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 735 SHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVK 787
+ R +KCD +C FS S +LS+HRR+H G KPY C C K
Sbjct: 4 GSSGRSEWQQRERRRYKCD--ECGKSFSHSSDLSKHRRTHTGEKPYKCDECGK 54
|
| >2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 8e-10
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
++C EC K ++ S L H R H+GE+ +KCD +C F + L H R H G P
Sbjct: 19 YKCD--ECGKSFSHSSDLSKHRRTHTGEKPYKCD--ECGKAFIQRSHLIGHHRVHTGSGP 74
Query: 780 Y 780
Sbjct: 75 S 75
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 38/280 (13%), Positives = 76/280 (27%), Gaps = 86/280 (30%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+LVTG G +G+V+ E+L + RLA+ S L
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMAEIL-----------------RLADLSPL---------- 38
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLM-LQEEVSVVFNGAASLKLEAELKENVAANTRG 339
++ D + D++ + + + + + +E ++ + N G
Sbjct: 39 DPAGPNEECVQCD-------LADANAVNAMVAGCDGIVHLGG-ISVEKPFEQILQGNIIG 90
Query: 340 TQRLLDIALK--MKKLVAFIHFSTAFC---HPDQKVLEEKLYPSPVSPHDIMRAMEWMDD 394
L + A + + S+ +P + L + P
Sbjct: 91 LYNLYEAARAHGQPR---IVFASSNHTIGYYPQTERLGPDVPARPDGL------------ 135
Query: 395 ETIKQLTPKILGPHPNSYTFTKRLTETLVDEY--KTKLPVVIVRPSIVLPSFQEP--VPG 450
Y +K E L Y K +VR P +
Sbjct: 136 -----------------YGVSKCFGENLARMYFDKFGQETALVRIGSCTPEPNNYRMLST 178
Query: 451 WVDSLNGPVGVLVASGKGVVRSMILNDLSTETQVFNISSN 490
W ++ ++ + V+ S+N
Sbjct: 179 WFS---------HDDFVSLIEAVFRAPVLGCPVVWGASAN 209
|
| >1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72 | Back alignment and structure |
|---|
Score = 55.9 bits (136), Expect = 3e-10
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
+ C EC K +++ S L H R H+GE+ +KC +C FS++ L H+R H
Sbjct: 15 YGCV--ECGKAFSRSSILVQHQRVHTGEKPYKCL--ECGKAFSQNSGLINHQRIHTSGPS 70
Query: 780 Y 780
Sbjct: 71 S 71
|
| >1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72 | Back alignment and structure |
|---|
Score = 53.2 bits (129), Expect = 2e-09
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 737 LKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVK 787
HSGE+ + C +C FSRS L +H+R H G KPY C C K
Sbjct: 2 SSGSSGIHSGEKPYGCV--ECGKAFSRSSILVQHQRVHTGEKPYKCLECGK 50
|
| >2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60 | Back alignment and structure |
|---|
Score = 54.0 bits (131), Expect = 9e-10
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRH-RRSHFG 776
R+F C C + +A+ HLK H R H+ E+ + C C F+R D L RH ++ H G
Sbjct: 1 RSFVCE--VCTRAFARQEHLKRHYRSHTNEKPYPCG--LCNRAFTRRDLLIRHAQKIHSG 56
|
| >2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 1e-06
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 748 RSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVK----KSLLA 792
RSF C+ C F+R + L RH RSH KPYPC LC + + LL
Sbjct: 1 RSFVCE--VCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLI 47
|
| >2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 2e-09
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
SGER + C+ +C F R L H + HF K +
Sbjct: 3 SGSSGSGERPYGCN--ECGKNFGRHSHLIEHLKRHFREKSSGPS 44
|
| >2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 5e-06
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
R + C EC K + + SHL HL+RH E+S
Sbjct: 11 RPYGCN--ECGKNFGRHSHLIEHLKRHFREKSSGP 43
|
| >2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 2e-09
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHS---GERSFKCDWQDCKWQFSRSDELSRHRRSHF- 775
QC C + + L H R+H+ F C+ C +F + D ++ HR
Sbjct: 8 LQCE--ICGFTCRQKASLNWHQRKHAETVAALRFPCE--FCGKRFEKPDSVAAHRSKSHP 63
Query: 776 GIKPYPCTLCVKKS 789
+ P S
Sbjct: 64 ALLLAPQESSGPSS 77
|
| >2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 8e-09
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 744 HSGERSFKCDWQDCKWQFSRSDELSRHRRSH---FGIKPYPCTLCVK 787
SG +C+ C + + L+ H+R H +PC C K
Sbjct: 2 SSGSSGLQCE--ICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGK 46
|
| >2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 3e-09
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ + C ++C FSR+ L +H R H G KP +
Sbjct: 2 SSGSSGTGEKLYNC--KECGKSFSRAPCLLKHERLHSGEKPSGPS 44
|
| >2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 4e-09
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRH-RRSHFGIKPYPCTLCVK 787
+ S + + C Q C FSR D L+ H ++ H +P+ C + V
Sbjct: 2 SSGSSGSVGKPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVS 49
|
| >2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 4e-06
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRR-HSGERSFKCDWQDCKWQFS 762
+ C C K +++ HL H+++ H+ ER KC Q S
Sbjct: 13 YICQ--SCGKGFSRPDHLNGHIKQVHTSERPHKC--QVWVSGPS 52
|
| >2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 5e-09
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ SGE+ FKC ++C F + + H+RSH G KP +
Sbjct: 2 SSGSSGSGEKPFKC--EECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
|
| >2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 7e-09
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ S E+ +KC+ DC ++R L H+R H G K +
Sbjct: 2 SSGSSGSVEKPYKCE--DCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 8e-09
Identities = 44/236 (18%), Positives = 79/236 (33%), Gaps = 69/236 (29%)
Query: 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYI---LCRAKRGLTPKARLAEFSKLPV 272
A +V+V GG GF+G L+++LL + +V++ L A++
Sbjct: 30 LANTNVMVVGGAGFVGSNLVKRLLELGVN--QVHVVDNLLSAEK---------------- 71
Query: 273 FERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLM-LQEEVSVVFNGAA------SLKL 325
+ + E I D LL LQ+E VF+ A S+
Sbjct: 72 -INV-----PDHPAVRFSETSI-------TDDALLASLQDEYDYVFHLATYHGNQSSIH- 117
Query: 326 EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDI 385
+ + NT T +L + K+L ++ + + E+ + +
Sbjct: 118 --DPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCS-----IAEKTFDDAKATEE-- 168
Query: 386 MRAMEWMDDETIKQLTPKILGPHPNS-YTFTKRLTETLVDEY-KT-KLPVVIVRPS 438
T + + +S Y+ +K E Y K +LP V R
Sbjct: 169 ---------------TDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQ 209
|
| >2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 9e-09
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
SGE+ + CD C F S EL RH+R H G KP +
Sbjct: 3 SGSSGSGEKPYVCD--YCGKAFGLSAELVRHQRIHTGEKPSGPS 44
|
| >1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 9e-09
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSH 774
R +G + F+C DC FSRSD L+ HR+ H
Sbjct: 2 STRGSTGIKPFQC--PDCDRSFSRSDHLALHRKRH 34
|
| >2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 1e-08
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
GER +C DC F ++ +HRR H G KP +
Sbjct: 3 SGSSGHGERGHRCS--DCGKFFLQASNFIQHRRIHTGEKPSGPS 44
|
| >1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 1e-08
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
EC K S LK H+R H+ R + C C + F L++H +S K
Sbjct: 6 ECGIRXKKPSMLKKHIRTHTDVRPYHCT--YCNFSFKTKGNLTKHMKSKAHSK 56
|
| >2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 1e-08
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
GE+ +KCD C +FS+S L H+R H G KP +
Sbjct: 3 SGSSGMGEKCYKCD--VCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
|
| >2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-08
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
SGE+ F+C+ +C +F+++ L H+R H G KP +
Sbjct: 3 SGSSGSGEKPFQCE--ECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
|
| >2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-08
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ FKCD C F L+RH H KP +
Sbjct: 2 SSGSSGTGEKPFKCD--ICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
|
| >2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-08
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
SGE+ +KC +C F R L+ HRR H G +P +
Sbjct: 3 SGSSGSGEKPYKCS--ECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
|
| >2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 2e-08
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ +KC +C F + ++H+R H G +P +
Sbjct: 2 SSGSSGTGEKPYKCM--ECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
|
| >2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-08
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ FKC +C +++ L++H+R H G KP +
Sbjct: 3 SGSSGTGEKPFKCG--ECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
|
| >2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-08
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ F C DC FS L++HRR H G KP +
Sbjct: 2 SSGSSGTGEKPFDCI--DCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
|
| >2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-08
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +G++ F+C C F L H+R H G K P +
Sbjct: 2 SSGSSGTGQKPFECT--HCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
|
| >2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-08
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +G++ FKC+ +CK F++S L+ H+R H G KP +
Sbjct: 2 SSGSSGAGKKLFKCN--ECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
|
| >2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-08
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ FKC +C FSR L+ H + H G KP +
Sbjct: 2 SSGSSGTGEKPFKCV--ECGKGFSRRSALNVHHKLHTGEKPSGPS 44
|
| >2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-08
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
SGER FKC+ +C F R L+ H R H K +
Sbjct: 3 SGSSGSGERPFKCN--ECGKGFGRRSHLAGHLRLHSREKSSGPS 44
|
| >2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 38.7 bits (91), Expect = 2e-04
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
F+C EC K + + SHL HLR HS E+S
Sbjct: 13 FKCN--ECGKGFGRRSHLAGHLRLHSREKSSGP 43
|
| >2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-08
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GER ++C +C F+R L H+R H G KP +
Sbjct: 3 SGSSGTGERHYECS--ECGKAFARKSTLIMHQRIHTGEKPSGPS 44
|
| >2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-08
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE ++C +C FSR +L H+R+H G KP +
Sbjct: 3 SGSSGTGENPYECH--ECGKAFSRKYQLISHQRTHAGEKPSGPS 44
|
| >2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-08
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ +KC+ +C F+++ L+RHRR H G KP +
Sbjct: 2 SSGSSGTGEKPYKCN--ECGKVFTQNSHLARHRRVHTGGKPSGPS 44
|
| >2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-08
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+G+R ++C +C F L HRRSH G KP +
Sbjct: 3 SGSSGTGQRPYECI--ECGKAFKTKSSLICHRRSHTGEKPSGPS 44
|
| >2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-08
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ SGE+ +KC +C + R +L H+R H G K +
Sbjct: 2 SSGSSGSGEKPYKCV--ECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
|
| >2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-08
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ F+C +C FS S +L+ H+R H G KP +
Sbjct: 3 SGSSGTGEKPFECA--ECGKSFSISSQLATHQRIHTGEKPSGPS 44
|
| >2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-08
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ +KC+ +C FSR+ +LS+H++ H G KP +
Sbjct: 3 SGSSGTGEKRYKCN--ECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
|
| >2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-08
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ +KC+ +C F+++ L+RHR H G KP +
Sbjct: 2 SSGSSGTGEKPYKCN--ECGKVFTQNSHLARHRGIHTGEKPSGPS 44
|
| >2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-08
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
SGE+ FKC+ +C +F+++ +L H+R H G KP +
Sbjct: 3 SGSSGSGEKPFKCE--ECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
|
| >2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-08
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ +KC Q C F S L +H H G +P +
Sbjct: 3 SGSSGTGEKPYKC--QVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
|
| >2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 3e-08
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ SGE+ +KC+ +C F+++ L+ H R H G KP +
Sbjct: 2 SSGSSGSGEKPYKCN--ECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
|
| >2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 3e-08
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ + C+ +C F + L+RHRR H G KP +
Sbjct: 2 SSGSSGTGEKPYICN--ECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
|
| >2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 3e-08
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ SGE+ FKC +C F ++ L+ H R H G KP +
Sbjct: 2 SSGSSGSGEKPFKCK--ECGKAFRQNIHLASHLRIHTGEKPSGPS 44
|
| >2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 3e-08
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ +KC+ +C FS++ +L+RH+R H G KP +
Sbjct: 3 SGSSGTGEKPYKCN--ECGKAFSQTSKLARHQRIHTGEKPSGPS 44
|
| >2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 3e-08
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ +KC DC F+R L H++SH G + +
Sbjct: 3 SGSSGTGEKPYKCS--DCGKAFTRKSGLHIHQQSHTGERHSGPS 44
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 52/315 (16%), Positives = 96/315 (30%), Gaps = 88/315 (27%)
Query: 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYIL----CRAKRGLTPKARLAEFSKLPVF 273
+++L+TGG GF+G L + P KV +L + L F L F
Sbjct: 10 NQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDKFRSNTLFSNNRPSSLGHFKNLIGF 68
Query: 274 ERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFN-GAASLKLEAELKEN 332
+ +I DI + + + +F+ A S +
Sbjct: 69 ------------KGEVIAADINNPLDLRR-----LEKLHFDYLFHQAAVSDTTMLNQELV 111
Query: 333 VAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKV-LEEKLYPSPVSPHDIMRAMEW 391
+ N + LL+IA K I+ S+A + + K SP +
Sbjct: 112 MKTNYQAFLNLLEIARSKK--AKVIYASSAGVYGNTKAPNVVGKNESPENV--------- 160
Query: 392 MDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSF------Q 445
Y F+K + V + V +R F +
Sbjct: 161 --------------------YGFSKLCMDEFVLSHSNDNVQVGLRY------FNVYGPRE 194
Query: 446 EP-------VPGWVDSL--NGPVGVLVASG---------KGVVRSMILNDLSTETQVFNI 487
V V L G + V+++ + + ++ V+N+
Sbjct: 195 FYKEKTASMVLQLALGAMAFKEV-KLFEFGEQLRDFVYIEDVIQANVKAMKAQKSGVYNV 253
Query: 488 SSNEVEAITWGEIIS 502
+ +A ++ EI+S
Sbjct: 254 GYS--QARSYNEIVS 266
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 33/245 (13%), Positives = 67/245 (27%), Gaps = 77/245 (31%)
Query: 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRK 278
+LVTG G +G + L + V + G E
Sbjct: 3 NRLLVTGAAGGVGSAIRPHLGTLAHE---VRLSDIVDLG--AAEAHEEI----------- 46
Query: 279 ECPAQLSRLHIIEGDILQANLGIKDSDLLM-LQEEVSVVFNGAASLKLEAELKENVAANT 337
+ D+ D+ + L ++ + + + +E + + AN
Sbjct: 47 -----------VACDLA-------DAQAVHDLVKDCDGIIHLGG-VSVERPWNDILQANI 87
Query: 338 RGTQRLLDIA--LKMKKLVAFIHFSTAFC---HPDQKVLEEKLYPSPVSPHDIMRAMEWM 392
G L + A L + + S+ +P ++ ++ P S
Sbjct: 88 IGAYNLYEAARNLGKPR---IVFASSNHTIGYYPRTTRIDTEVPRRPDSL---------- 134
Query: 393 DDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY--KTKLPVVIVRPSIVLPSFQEP--V 448
Y +K E L Y K + + +R P ++ +
Sbjct: 135 -------------------YGLSKCFGEDLASLYYHKFDIETLNIRIGSCFPKPKDARMM 175
Query: 449 PGWVD 453
W+
Sbjct: 176 ATWLS 180
|
| >2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 3e-08
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +G++ +KC+ +C F+++ L+RHR H G KP +
Sbjct: 2 SSGSSGTGKKPYKCN--ECGKVFTQNSHLARHRGIHTGEKPSGPS 44
|
| >2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 4e-08
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GER KC+ +C F +S L +H+R H G KP +
Sbjct: 3 SGSSGTGERPHKCN--ECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
|
| >2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 4e-08
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
+ +GE+ F+C +C FS S L +H RSH P
Sbjct: 2 SSGSSGTGEKPFQCK--ECGMNFSWSCSLFKHLRSHERTDPSGP 43
|
| >2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 4e-08
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ + C +C FS L H R+H G KP +
Sbjct: 2 SSGSSGAGEKPYGCS--ECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
|
| >2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 4e-08
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ SGE+ + C+ +C FS+ LS H+R+H G KP +
Sbjct: 2 SSGSSGSGEKPYGCN--ECGKTFSQKSILSAHQRTHTGEKPSGPS 44
|
| >2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 4e-08
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ F+C +C+ F+ L H+R+H G KP +
Sbjct: 2 SSGSSGTGEKPFECS--ECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
|
| >2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 4e-08
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +G + ++C+ +C FS++ +L+RH+R H G KP +
Sbjct: 2 SSGSSGTGGKPYQCN--ECGKAFSQTSKLARHQRVHTGEKPSGPS 44
|
| >2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 4e-08
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ + C +C F+ L +H++ H KP +
Sbjct: 2 SSGSSGTGEKPYICA--ECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
|
| >2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 4e-08
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ ++C +C FS++ L +H+R H G KP +
Sbjct: 3 SGSSGTGEKPYECK--ECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
|
| >2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 4e-08
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ +KC+ +C F+++ L RHR H G KP +
Sbjct: 2 SSGSSGTGEKPYKCN--ECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 55.1 bits (132), Expect = 4e-08
Identities = 46/252 (18%), Positives = 84/252 (33%), Gaps = 50/252 (19%)
Query: 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIG--KVYILCRAKRGLTPKARLAEFSKLPVFERL 276
L+ G TG +G L E L + G KVY + R R
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVAR---------------------RT 40
Query: 277 RKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAAN 336
R + ++ ++ DI + L +V+ VF + + +EN AN
Sbjct: 41 RPAWHED-NPINYVQCDISDPD---DSQAKLSPLTDVTHVF--YVTWANRSTEQENCEAN 94
Query: 337 TRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDET 396
++ + +LD + + I T K Y P + + + + E
Sbjct: 95 SKMFRNVLDAVIPNCPNLKHISLQTGR----------KHYMGPFESYGKIESHDPPYTED 144
Query: 397 IKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDSLN 456
+ +L + N Y + + V++ + L + RP + P + +L
Sbjct: 145 LPRL------KYMNFYYDLEDIMLEEVEKKE-GLTWSVHRPGNIF----GFSPYSMMNLV 193
Query: 457 GPVGVLVASGKG 468
G + V A K
Sbjct: 194 GTLCVYAAICKH 205
|
| >2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 4e-08
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ +KC+ +C F+++ L+ H+R H G+KP +
Sbjct: 2 SSGSSGTGEKPYKCN--ECGKVFTQNSHLANHQRIHTGVKPSGPS 44
|
| >2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 5e-08
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE F C +C F+ L H++ H G +P +
Sbjct: 2 SSGSSGTGENPFICS--ECGKVFTHKTNLIIHQKIHTGERPSGPS 44
|
| >2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 5e-08
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ + C+ C F S L++H R H +
Sbjct: 3 SGSSGTGEKPYSCN--VCGKAFVLSAHLNQHLRVHTQETLSGPS 44
|
| >2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 5e-08
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +G + + C C FS +L H+RSH G+KP +
Sbjct: 2 SSGSSGTGVKPYGCS--QCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
|
| >2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 5e-08
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ GE+ ++C +C FS S L++H +H KP +
Sbjct: 2 SSGSSGEGEKPYQCS--ECGKSFSGSYRLTQHWITHTREKPSGPS 44
|
| >2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 48.6 bits (117), Expect = 5e-08
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ +KC +C F R+ L+RH+ H G KP +
Sbjct: 2 SSGSSGTGEKPYKCH--ECGKVFRRNSHLARHQLIHTGEKPSGPS 44
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 5e-08
Identities = 42/234 (17%), Positives = 68/234 (29%), Gaps = 68/234 (29%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+LVTG +G +G L+ L K I + T
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGK--KNVIASDIVQRDTG-------------------- 39
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA--SLKLEAELKENVAANTR 338
+ I D+ + + + + + +F+ A S K E + N
Sbjct: 40 -----GIKFITLDVSNRDEIDR----AVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMN 90
Query: 339 GTQRLLDIALKMKKLVAFIHFST--AFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDET 396
GT +L+ A K ++ + ST F P + T
Sbjct: 91 GTYNILEAA-KQHRVEKVVIPSTIGVF------------GPETPKN--------KVPSIT 129
Query: 397 IKQLTPKILGPHPNS-YTFTKRLTETLVDEYKTK--LPVVIVRPSIVLPSFQEP 447
I P + + TK E L Y K L V +R ++ EP
Sbjct: 130 I---------TRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEP 174
|
| >2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 6e-08
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ GE+++KC +C FS++ L H+ H G KP +
Sbjct: 2 SSGSSGMGEKTWKCR--ECDMCFSQASSLRLHQNVHVGEKPSGPS 44
|
| >2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 6e-08
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +G + F+C +C F+R LS H++ H G KP +
Sbjct: 2 SSGSSGTGGKHFECT--ECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
|
| >2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 6e-08
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ +KC ++C F +L H H G KP +
Sbjct: 2 SSGSSGTGEKPYKC--EECGKGFICRRDLYTHHMVHTGEKPSGPS 44
|
| >2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 6e-08
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ +KC DC F+ L H++ H G + +
Sbjct: 2 SSGSSGTGEKPYKCS--DCGKSFTWKSRLRIHQKCHTGERHSGPS 44
|
| >2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 6e-08
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ +KC+ C ++ L H++ H G +P +
Sbjct: 2 SSGSSGTGEKPYKCE--KCGKGYNSKFNLDMHQKVHTGERPSGPS 44
|
| >2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 7e-08
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ ++C +C F++ L++H+R H G KP +
Sbjct: 2 SSGSSGTGEKPYRCG--ECGKAFAQKANLTQHQRIHTGEKPSGPS 44
|
| >2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 7e-08
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ + C+ +C F +L H+R H G KP +
Sbjct: 2 SSGSSGTGEKPYNCE--ECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
|
| >2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 8e-08
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ +KC+ +C F + LSRH+R H G KP +
Sbjct: 3 SGSSGTGEKPYKCN--ECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
|
| >2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 9e-08
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ +KCD C F L+ H+R H G KP +
Sbjct: 2 SSGSSGTGEKPYKCD--VCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
|
| >2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 9e-08
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ +C ++C FS + +L H+R H G P +
Sbjct: 3 SGSSGTGEKPHEC--RECGKSFSFNSQLIVHQRIHTGENPSGPS 44
|
| >2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-07
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ + C ++C F + L +H+R H G KP +
Sbjct: 2 SSGSSGTGEKPYNC--KECGKSFRWASCLLKHQRVHSGEKPSGPS 44
|
| >2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 1e-07
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ ++CD C+ FS L++H+R H G KP +
Sbjct: 3 SGSSGTGEKPYECD--VCRKAFSHHASLTQHQRVHSGEKPSGPS 44
|
| >2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 1e-07
Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ ++C C F++ L++H+++H G KP +
Sbjct: 2 SSGSSGTGEKPYECK--VCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
|
| >2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 1e-07
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ +KC+ +C F L+ H+ H G KP +
Sbjct: 2 SSGSSGTGEKPYKCN--ECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
|
| >2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 1e-07
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ KC +C F +L H+R+H K +
Sbjct: 2 SSGSSGTGEKPCKCT--ECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
|
| >2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 1e-07
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
+ +GER + C C F+ L +H++ H G KP
Sbjct: 2 SSGSSGTGERPYICT--VCGKAFTDRSNLIKHQKIHTGEKPSGP 43
|
| >2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 1e-07
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
+ +G + + C+ +C FS L+ H+ H G KP
Sbjct: 2 SSGSSGTGVKPYMCN--ECGKAFSVYSSLTTHQVIHTGEKPSGP 43
|
| >2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 1e-07
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ ++C C F++ +L H++ H G KP +
Sbjct: 3 SGSSGTGEKPYECS--ICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
|
| >2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 2e-07
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
+ SG++ ++C +C+ F + L++H+R H G +
Sbjct: 2 SSGSSGSGKKPYECK--ECRKTFIQIGHLNQHKRVHTGERSSGP 43
|
| >2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 2e-07
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 742 RRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785
+ C+ C F L+RH+ SH G KPY
Sbjct: 5 SSGRTRKQVACE--ICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
|
| >2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48 | Back alignment and structure |
|---|
Score = 37.6 bits (87), Expect = 6e-04
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
+ C C K + + HL H HSGE+ +
Sbjct: 11 KQVACE--ICGKIFRDVYHLNRHKLSHSGEKPYSS 43
|
| >2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 2e-07
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GER ++C +C F + LS H+R H G KP +
Sbjct: 3 SGSSGTGERHYECS--ECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 39/240 (16%), Positives = 73/240 (30%), Gaps = 67/240 (27%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+ + G G +G+ L ++L+ K G + + + + + E
Sbjct: 17 IAIIGAAGMVGRKLTQRLV---------------KDGSLGGKPVEK---FTLIDVFQPEA 58
Query: 281 PAQLS-RLHIIEGDILQANLGIKDSDLL--MLQEEVSVVFNGAASLKLEAELKENVAA-- 335
PA S + D+ +++ V+F+ AA + EAEL +
Sbjct: 59 PAGFSGAVDARAADLS-------APGEAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRI 111
Query: 336 NTRGTQRLLDIA----LKMKKLVAFIHFSTA--FCHPDQKVLEEKLYPSPVSPHDIMRAM 389
N GT+ L D K + S+ F P P P+ +
Sbjct: 112 NLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPL---------PYPIPDEFHTTPL 162
Query: 390 EWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTK--LPVVIVRPSIVLPSFQEP 447
SY K + E L+ +Y + + +R + +P
Sbjct: 163 --------------------TSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKP 202
|
| >2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 2e-07
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ ++C C FS LS H+R H G KP +
Sbjct: 3 SGSSGTGEKPYECS--VCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
|
| >2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 2e-07
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPY 780
GE+ +KC+ C +F + L H H G P
Sbjct: 2 SSGSSGGEKPYKCE--TCGARFVQVAHLRAHVLIHTGSGPS 40
|
| >2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-07
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPY 780
GE+ ++CD C FS+ L H R H G P
Sbjct: 1 GSSGSSGGEKPYRCD--QCGKAFSQKGSLIVHIRVHTGSGPS 40
|
| >2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-07
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
+ +GE+ ++C DC F + +L H+R H G P
Sbjct: 2 SSGSSGTGEKPYECS--DCGKSFIKKSQLHVHQRIHTGENPSGP 43
|
| >2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-07
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 744 HSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
SGE+ F C C+ FS L H+++H KP +
Sbjct: 5 SSGEKPFGCS--CCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
|
| >2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 2e-07
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
+ +GE+ ++C+ +C+ F+ L H+R+H G
Sbjct: 2 SSGSSGTGEKPYECN--ECQKAFNTKSNLMVHQRTHTGESGPSS 43
|
| >2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 3e-07
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 742 RRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
SGE ++C +C F+R D+L H+R+H G
Sbjct: 3 SGSSGENPYECS--ECGKAFNRKDQLISHQRTHAGESGPSS 41
|
| >2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-07
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ +KC+ +C F L+ H+ +H G KP +
Sbjct: 3 SGSSGTGEKPYKCN--ECGKAFRARSSLAIHQATHSGEKPSGPS 44
|
| >2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 3e-07
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRS-HFGIKPYPCT 783
+ +G++ ++C +C F ++ L RH R H G KP +
Sbjct: 2 SSGSSGTGKKPYECI--ECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
|
| >2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 3e-07
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ ++C+ C FS L+ H+ H G KP +
Sbjct: 3 SGSSGTGEKPYECN--QCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
|
| >2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 3e-07
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
+ +GE+ ++C +C F+ L H++ H G KP
Sbjct: 2 SSGSSGTGEKPYRCA--ECGKAFTDRSNLFTHQKIHTGEKPSGP 43
|
| >2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 4e-07
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPY 780
GE+ + C+ C +F L H R H G P
Sbjct: 1 GSSGSSGGEKPYPCE--ICGTRFRHLQTLKSHLRIHTGSGPS 40
|
| >2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 5e-07
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +G +KC C+ FS L H+R H KP +
Sbjct: 2 SSGSSGAGVNPYKCS--QCEKSFSGKLRLLVHQRMHTREKPSGPS 44
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 5e-07
Identities = 27/227 (11%), Positives = 64/227 (28%), Gaps = 71/227 (31%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+++ G +GF+G LL + L RG A R ++
Sbjct: 7 IVLIGASGFVGSALLNEALN---------------RGFEVTA----------VVRHPEKI 41
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGT 340
+ L + + D+ + ++ + + V + ++ +
Sbjct: 42 KIENEHLKVKKADVSSLD------EVCEVCKGADAVISAFNPGWNNPDI---YDETIKVY 92
Query: 341 QRLLDIALKMKKLVAFIHFSTA---FCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETI 397
++D +K + F+ A F P ++++ P
Sbjct: 93 LTIID-GVKKAGVNRFLMVGGAGSLFIAPGLRLMDSGEVP-------------------- 131
Query: 398 KQLTPKILGPHPNSYTFTKRLTETLVDEY--KTKLPVVIVRPSIVLP 442
N K L E ++ + ++ V P+ +
Sbjct: 132 -----------ENILPGVKALGEFYLNFLMKEKEIDWVFFSPAADMR 167
|
| >2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 5e-07
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 735 SHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRS--HFGIKPYPCTLCVKKS 789
S K + +G F+C C + EL+ H H+ + K
Sbjct: 5 SSGKLYGSIFTGASKFRCKD--CSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKR 59
|
| >2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 39.7 bits (92), Expect = 5e-04
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRR--HSGERSFKCDW-QDCKWQFSRSDELSRHRRSHFG 776
F+C +C Y + L H+ H + + + D +W R L
Sbjct: 20 FRCK--DCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDA 77
Query: 777 IKPYPCTLC 785
K C C
Sbjct: 78 QKVLKCMYC 86
|
| >2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 7e-07
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
+ +GE ++C +C FSR D+L H+++H G
Sbjct: 2 SSGSSGTGENPYEC--CECGKVFSRKDQLVSHQKTHSGQSGPSS 43
|
| >1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 Length = 32 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 8e-07
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSH 774
+R + CD C F R+ +L RH++SH
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
|
| >2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 8e-07
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
S +S +C +C F+ L++H+R H G KP +
Sbjct: 3 SGSSGSSTKSHQCH--ECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
|
| >2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 1e-06
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
+ SGE+ ++C+ +C F L H R+H G+
Sbjct: 2 SSGSSGSGEKPYECN--ECGKAFIWKSLLIVHERTHAGVSGPSS 43
|
| >2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 1e-06
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
+ +G + + C+ +C F L H R+H G
Sbjct: 2 SSGSSGTGMKPYVCN--ECGKAFRSKSYLIIHTRTHTGESGPSS 43
|
| >2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-06
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
SGE+S CD +C F L H+R H G K +
Sbjct: 3 SGSSGSGEKSHTCD--ECGKNFCYISALRIHQRVHMGEKCSGPS 44
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 40/231 (17%), Positives = 64/231 (27%), Gaps = 87/231 (37%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIG-KVYILCRAKRGLTPKARLAEFSKLPVFERLRKE 279
+ VTGGTGF+G+ ++E + G IL R+ E+
Sbjct: 5 IAVTGGTGFLGQYVVESIKND----GNTPIILTRSIGN--KAINDYEY------------ 46
Query: 280 CPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKENV 333
D DL+ +V V + AA +
Sbjct: 47 ----------RVSDY-------TLEDLINQLNDVDAVVHLAATRGSQGKI-------SEF 82
Query: 334 AANTRGTQRLLDIALK--MKKLVAFIHFSTAFCHPDQKVL--EEKLYPSPVSPHDIMRAM 389
N TQ L D + + ++ ST + D+ L EK P P
Sbjct: 83 HDNEILTQNLYDACYENNISN---IVYASTISAYSDETSLPWNEKELPLPDLM------- 132
Query: 390 EWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPS 438
Y +K E + + Y L + +R +
Sbjct: 133 ----------------------YGVSKLACEHIGNIYSRKKGLCIKNLRFA 161
|
| >2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 4e-06
Identities = 22/82 (26%), Positives = 25/82 (30%), Gaps = 15/82 (18%)
Query: 735 SHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLLAIL 794
+ H G+RS KC C F R LSR K C C K S
Sbjct: 4 GSSGKRQKIHLGDRSQKC--SKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAA 54
Query: 795 NCPHEAECTPTFKHRAEKTSTP 816
E +KTS P
Sbjct: 55 LNKDEG------NESGKKTSGP 70
|
| >2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 2e-05
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
+ +S+ C +C F+R L+RH++ H
Sbjct: 3 SGSSGTDSKSYNC--NECGKAFTRIFHLTRHQKIHTRKSGPSS 43
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 52/297 (17%), Positives = 86/297 (28%), Gaps = 90/297 (30%)
Query: 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRK 278
+SV + G +G G+VLL+++L KV ++ R K +A
Sbjct: 19 KSVFILGASGETGRVLLKEILEQ-GLFSKVTLIGRRKLTFDEEA---------------- 61
Query: 279 ECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTR 338
++ D K D + V F + + +A + V +
Sbjct: 62 -----YKNVNQEVVDFE------KLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRD 110
Query: 339 GTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIK 398
+ ++A K F S+
Sbjct: 111 YVLKSAELA-KAGGCKHFNLLSS------------------------------------- 132
Query: 399 QLTPKILGPHPNSYTF---TKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPG--WVD 453
G +S K E V+E K + RP ++L QE PG V
Sbjct: 133 ------KGADKSSNFLYLQVKGEVEAKVEELKFD-RYSVFRPGVLLCDRQESRPGEWLVR 185
Query: 454 SLNGPVGVLVASGKG-----VVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGK 505
G + ASG VVR+M+ N + + + + I GK
Sbjct: 186 KFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMEL-------LENKAIHDLGK 235
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 44/230 (19%), Positives = 71/230 (30%), Gaps = 70/230 (30%)
Query: 221 VLVTGGTGFMGKVLLEKLLRS------CPDIGKVYILCRAKRGLTPKARLAEFSKLPVFE 274
VL+ G GF+G L E+LLR DIG ++ F P
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYGLDIG--------------SDAISRFLNHP--- 45
Query: 275 RLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELK---E 331
H +EGDI + I+ ++ VV A +
Sbjct: 46 -----------HFHFVEGDISIHSEWIEY-----HVKKCDVVLPLVAIATPIEYTRNPLR 89
Query: 332 NVAANTRGTQRLLDIALKMKKLVAFIHFSTA--FCHPDQKVLEEKLYPSPVSPHDIMRAM 389
+ R++ +K +K I ST+ + K +E V P + R
Sbjct: 90 VFELDFEENLRIIRYCVKYRK--RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRW- 146
Query: 390 EWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY--KTKLPVVIVRP 437
Y+ +K+L + ++ Y K L + RP
Sbjct: 147 ---------------------IYSVSKQLLDRVIWAYGEKEGLQFTLFRP 175
|
| >2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 2e-05
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFG 776
+ +GE FKC C F++ + L +H R+H
Sbjct: 2 SSGSSGAGENPFKCS--KCDRVFTQRNYLVQHERTHAR 37
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 37/240 (15%), Positives = 66/240 (27%), Gaps = 83/240 (34%)
Query: 217 AGRSVLVTGGTGFMGKVLLEKLLRS------CPDIGKVYILCRAKRGLTPKARLAEFSKL 270
+ VL+ G GF+G L +++L + D+ RL + K
Sbjct: 23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQ--------------TDRLGDLVKH 68
Query: 271 PVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELK 330
R+H EGDI ++ ++ V+ A +K
Sbjct: 69 E--------------RMHFFEGDITINKEWVEY-----HVKKCDVILPLVAIATPATYVK 109
Query: 331 ---ENVAANTRGTQRLLDIALKMKKLVAFIHFST---------AFCHPDQKVLEEKLYPS 378
+ ++ A+K K + ST PD L
Sbjct: 110 QPLRVFELDFEANLPIVRSAVKYGK--HLVFPSTSEVYGMCADEQFDPD----ASALTYG 163
Query: 379 PVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLV-DEYKTKLPVVIVRP 437
P++ R Y +K+L + ++ L + RP
Sbjct: 164 PINK---PRW----------------------IYACSKQLMDRVIWGYGMEGLNFTLFRP 198
|
| >2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 7e-05
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 742 RRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPY 780
SG+R ++C Q+C F + L+ H R H G P
Sbjct: 3 SGSSGQRVYEC--QECGKSFRQKGSLTLHERIHTGSGPS 39
|
| >2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 7e-05
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 744 HSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
SGE+ + C +CK FS ++ L +H++ H
Sbjct: 5 SSGEKPYSC--AECKETFSDNNRLVQHQKMHTVKSGPSS 41
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 7e-05
Identities = 33/241 (13%), Positives = 66/241 (27%), Gaps = 39/241 (16%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
V+V GG G+ G L + ++ V L R + +R+ +
Sbjct: 14 VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLT-PIASIHDRISRWK 72
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLL---MLQEEVSVVFNGAA------SLKLEAELKE 331
+ + GDI D + L E V + S+ +
Sbjct: 73 ALTGKSIELYVGDIC-------DFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVY 125
Query: 332 NVAANTRGTQRLLDIALKMKKLVAFIHFSTA--FCHPDQKVLEEKLYPSPVSPHDIMRAM 389
N GT +L + + + T + P+ + E + ++
Sbjct: 126 TQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYI---TITH------- 175
Query: 390 EWMDDETIKQLTPKILGPHPNS-YTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQE 446
+ T PK +S Y +K + + + +V +
Sbjct: 176 ---NGRTDTLPYPK----QASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTD 228
Query: 447 P 447
Sbjct: 229 E 229
|
| >2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42 | Back alignment and structure |
|---|
Score = 38.8 bits (91), Expect = 1e-04
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPY 780
GE + C C F++ L+ H+RS P
Sbjct: 1 GSSGSSGGETPYLC--GQCGKSFTQRGSLAVHQRSCSQSGPS 40
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 57/296 (19%), Positives = 84/296 (28%), Gaps = 95/296 (32%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIG-KVYI---LCRAKRGLTPKARLAEFSKLPVFERL 276
V +TG G +G + E LL G KV +R E L
Sbjct: 24 VFITGICGQIGSHIAELLLER----GDKVVGIDNFATGRR-----------------EHL 62
Query: 277 RKECPAQLSRLHIIEGDILQANLGIKDSDL---LMLQEEVSVVFNGAASLKLEAELKENV 333
L +EG I D L L+ + V + AAS K + +
Sbjct: 63 -----KDHPNLTFVEGSI-------ADHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDT 110
Query: 334 AANTRGTQRLLDIALKM--KKLVAFIHFSTAFC---HPDQKVLEEKLYPSPVSPHDIMRA 388
N G ++ A K + F++F TA C P Q PV
Sbjct: 111 LTNCVGGSNVVQAAKKNNVGR---FVYFQTALCYGVKPIQ---------QPVRLDHPRN- 157
Query: 389 MEWMDDETIKQLTPKILGPHPNS-YTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEP 447
NS Y +K E ++ L V R + V+
Sbjct: 158 -------------------PANSSYAISKSANEDYLEYS--GLDFVTFRLANVVGPRNVS 196
Query: 448 --VPGWVDS-LNG---PVG------VLVASGKGVVRSMILNDLSTETQVFNISSNE 491
+P + G V V V K + R+ + ++ SS
Sbjct: 197 GPLPIFFQRLSEGKKCFVTKARRDFVFV---KDLARATVRAVDGVGHGAYHFSSGT 249
|
| >1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 Length = 47 | Back alignment and structure |
|---|
Score = 38.7 bits (90), Expect = 2e-04
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGER 748
+TF+C +P C K + + ++++H++ H +R
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 36/174 (20%), Positives = 61/174 (35%), Gaps = 47/174 (27%)
Query: 220 SVLVTGGTGFMGKVLLEKLLRSCPDIG-KVYI---LCRAKRGLTPKARLAEFSKLPVFER 275
+L+TGG G +G L+E L G ++ + KR + P
Sbjct: 22 RILITGGAGCLGSNLIEHWLPQ----GHEILVIDNFATGKREVLPPVAGLSV-------- 69
Query: 276 LRKECPAQLSRLHIIEGDILQANLGIKDSDLL---MLQEEVSVVFNGAASLKLEAELKEN 332
IEG + D+ LL + + V + AA+ K + E+
Sbjct: 70 --------------IEGSVT-------DAGLLERAFDSFKPTHVVHSAAAYKDPDDWAED 108
Query: 333 VAANTRGTQRLLDIALKM--KKLVAFIHFSTAFC--HPDQKVLEEKLYPSPVSP 382
A N +G+ + A K K+ ++F TA C P + +P +
Sbjct: 109 AATNVQGSINVAKAASKAGVKR---LLNFQTALCYGRPATVPIPIDSPTAPFTS 159
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPK 261
+ VL+ G TG G+ LL+++L P + KV R P+
Sbjct: 5 PKRVLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKALAEHPR 47
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Length = 344 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 32/154 (20%), Positives = 60/154 (38%), Gaps = 47/154 (30%)
Query: 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCR--AKRGLTPKARLAEFSKLPVF 273
+++L+TGGTG GK + K+L + + K+ + R K+
Sbjct: 19 LDNQTILITGGTGSFGKCFVRKVLDT-TNAKKIIVYSRDELKQ----------------- 60
Query: 274 ERLRKECPAQLSRLHIIEGDILQANLGIKDSD-LLMLQEEVSVVFNGAASLK-------- 324
+ E R+ GD ++D + L E V + + AA+LK
Sbjct: 61 SEMAMEFND--PRMRFFIGD-------VRDLERLNYALEGVDICIH-AAALKHVPIAEYN 110
Query: 325 -LEAELKENVAANTRGTQRLLDIAL--KMKKLVA 355
LE +K N+ G +++ L + +++A
Sbjct: 111 PLEC-IKTNIM----GASNVINACLKNAISQVIA 139
|
| >2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 45 | Back alignment and structure |
|---|
Score = 38.4 bits (88), Expect = 3e-04
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 744 HSGERSFKCDWQDCKWQFSRSDELSRHRRSHFG 776
SGE+ + C C +F R D +S H RSH G
Sbjct: 5 SSGEKPYSC--PVCGLRFKRKDRMSYHVRSHDG 35
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 41/238 (17%), Positives = 66/238 (27%), Gaps = 82/238 (34%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+ + G TG +GK LL+ L A A RK
Sbjct: 3 IFIVGSTGRVGKSLLKSLS---------------TTDYQIYA-GA-----------RK-- 33
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGA----ASLKLEAELKENVAAN 336
Q+ + N+ D+ EE++ +G + V +
Sbjct: 34 VEQVPQY---------NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGGKSLLKV--D 82
Query: 337 TRGTQRLLDIALKMKKLVA-FIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDE 395
G +L+ A K + V FI ST F +K + D A + D
Sbjct: 83 LYGAVKLMQAAEKAE--VKRFILLSTIFSLQPEKWIGAGFDA----LKDYYIAKHFADLY 136
Query: 396 TIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVD 453
K+ T L I++P + +E G +D
Sbjct: 137 LTKE----------------------------TNLDYTIIQPGAL---TEEEATGLID 163
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 6e-04
Identities = 27/178 (15%), Positives = 44/178 (24%), Gaps = 43/178 (24%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+ + G TG G +LE+ RG A R +
Sbjct: 3 IGIIGATGRAGSRILEEAKN---------------RGHEVTA----------IVRNAGKI 37
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGT 340
++I++ DI D L L ++ VV S + +
Sbjct: 38 TQTHKDINILQKDIF-------DLTLSDLSDQNVVVDAYGIS-------PDEAEKHVTSL 83
Query: 341 QRLLDIALKMKKLVAFIHFSTAFC---HPDQKVLEEKLYPSPVSPHDIMRAMEWMDDE 395
L+ L + A D L E + RA +
Sbjct: 84 DHLIS-VLNGTVSPRLLVVGGAASLQIDEDGNTLLESKGLREAPYYPTARAQAKQLEH 140
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 851 | |||
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 99.97 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 99.97 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 99.97 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 99.96 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 99.96 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 99.96 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 99.96 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 99.96 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 99.96 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 99.96 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.96 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 99.96 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 99.96 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 99.95 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 99.95 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 99.95 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 99.95 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 99.95 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 99.95 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 99.95 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 99.95 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 99.95 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 99.95 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 99.95 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 99.95 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 99.95 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 99.95 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 99.95 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 99.95 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 99.95 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.95 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 99.94 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 99.94 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 99.94 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 99.94 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 99.94 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 99.94 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 99.94 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 99.94 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 99.94 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 99.94 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 99.94 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 99.94 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 99.94 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 99.94 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 99.93 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 99.93 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 99.93 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 99.93 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 99.93 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 99.93 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 99.93 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 99.93 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 99.93 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 99.93 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 99.93 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 99.93 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 99.93 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 99.93 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 99.93 | |
| 2i13_A | 190 | AART; DNA binding, zinc finger, DNA binding protei | 99.92 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 99.92 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.92 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 99.92 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 99.91 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 99.91 | |
| 2i13_A | 190 | AART; DNA binding, zinc finger, DNA binding protei | 99.9 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.9 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.9 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.9 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 99.89 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.89 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.88 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.87 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.87 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.87 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 99.86 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.86 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.85 | |
| 1tf6_A | 190 | Protein (transcription factor IIIA); complex (tran | 99.85 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.84 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.84 | |
| 2lt7_A | 133 | Transcriptional regulator kaiso; zinc finger, doub | 99.84 | |
| 2lt7_A | 133 | Transcriptional regulator kaiso; zinc finger, doub | 99.83 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.83 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.82 | |
| 2gli_A | 155 | Protein (five-finger GLI); protein/DNA complex, tr | 99.82 | |
| 2rpc_A | 155 | Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr | 99.81 | |
| 1tf6_A | 190 | Protein (transcription factor IIIA); complex (tran | 99.81 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.8 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.79 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.79 | |
| 1ubd_C | 124 | Protein (YY1 zinc finger domain); transcription in | 99.79 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.78 | |
| 2jp9_A | 119 | Wilms tumor 1; DNA binding, nucleic acid recogniti | 99.78 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.78 | |
| 2dlq_A | 124 | GLI-kruppel family member HKR3; ZF-C2H2 domain, st | 99.78 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.78 | |
| 2gli_A | 155 | Protein (five-finger GLI); protein/DNA complex, tr | 99.77 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.77 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.77 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.76 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.76 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.75 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.75 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.75 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.74 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.74 | |
| 2jp9_A | 119 | Wilms tumor 1; DNA binding, nucleic acid recogniti | 99.74 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.74 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.73 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.72 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.72 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.72 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.72 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.72 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.71 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.71 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.71 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.71 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.7 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.7 | |
| 2dlq_A | 124 | GLI-kruppel family member HKR3; ZF-C2H2 domain, st | 99.7 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.7 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.7 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.7 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.7 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.7 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.7 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.7 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.69 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.69 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.69 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.69 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.69 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.69 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.69 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.69 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.69 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.68 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.68 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.68 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.68 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.68 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.68 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.67 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.67 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.67 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.67 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.67 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.67 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.67 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.67 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.67 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.66 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.66 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.66 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.66 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.66 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.66 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.66 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.66 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.66 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.66 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.65 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.65 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.65 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.65 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.65 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.65 | |
| 1ubd_C | 124 | Protein (YY1 zinc finger domain); transcription in | 99.65 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.65 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.65 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.65 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.65 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.65 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.65 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.65 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.65 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.65 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.65 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.65 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.65 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.64 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.64 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.64 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.64 | |
| 2rpc_A | 155 | Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr | 99.64 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.64 | |
| 2dmi_A | 115 | Teashirt homolog 3; zinc finger protein 537, struc | 99.64 | |
| 2ee8_A | 106 | Protein ODD-skipped-related 2; zinc binding, ZF-C2 | 99.64 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.64 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.64 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.64 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.64 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.64 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.64 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.64 | |
| 1a1h_A | 90 | QGSR zinc finger peptide; complex (zinc finger/DNA | 99.64 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.63 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.63 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.63 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.63 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.63 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.63 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.63 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.63 | |
| 2ee8_A | 106 | Protein ODD-skipped-related 2; zinc binding, ZF-C2 | 99.63 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.63 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.63 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.63 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.63 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.63 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.63 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.63 | |
| 1wjp_A | 107 | Zinc finger protein 295; ZF-C2H2 domain, zinc bind | 99.63 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.63 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.62 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.62 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.62 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.62 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.62 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.62 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.62 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.62 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.62 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.62 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.62 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.62 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.62 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.61 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.61 | |
| 1wjp_A | 107 | Zinc finger protein 295; ZF-C2H2 domain, zinc bind | 99.61 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.61 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.61 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.61 | |
| 2dmi_A | 115 | Teashirt homolog 3; zinc finger protein 537, struc | 99.61 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.61 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.61 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.61 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.61 | |
| 2dmd_A | 96 | Zinc finger protein 64, isoforms 1 and 2; ZNF338, | 99.61 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.61 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.6 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.6 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.6 | |
| 2dmd_A | 96 | Zinc finger protein 64, isoforms 1 and 2; ZNF338, | 99.6 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.6 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.6 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.6 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.6 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.6 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.6 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.6 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.6 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.6 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.6 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.6 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.6 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.6 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.59 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.59 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.59 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.59 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.59 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.59 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.59 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.59 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.59 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.59 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.59 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.59 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.58 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.58 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.58 | |
| 1a1h_A | 90 | QGSR zinc finger peptide; complex (zinc finger/DNA | 99.58 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.58 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.58 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.58 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.58 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.58 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.58 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.58 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.58 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.58 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.58 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.58 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.57 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.57 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.57 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.57 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.57 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.57 | |
| 2kmk_A | 82 | Zinc finger protein GFI-1; tandem repeat zinc fing | 99.56 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.56 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.56 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.55 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.55 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.54 | |
| 2kmk_A | 82 | Zinc finger protein GFI-1; tandem repeat zinc fing | 99.54 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.54 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.54 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.53 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.53 | |
| 2ebt_A | 100 | Krueppel-like factor 5; C2H2-type zinc-finger, met | 99.53 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.52 | |
| 2yt9_A | 95 | Zinc finger-containing protein 1; C2H2, structural | 99.52 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.52 | |
| 2yt9_A | 95 | Zinc finger-containing protein 1; C2H2, structural | 99.52 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.52 | |
| 2dlk_A | 79 | Novel protein; ZF-C2H2 domain, zinc finger protein | 99.52 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.52 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.51 | |
| 2wbs_A | 89 | Krueppel-like factor 4; transcription-DNA complex, | 99.51 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.5 | |
| 4gzn_C | 60 | ZFP-57, zinc finger protein 57; transcription-DNA | 99.5 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.5 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.5 | |
| 2ebt_A | 100 | Krueppel-like factor 5; C2H2-type zinc-finger, met | 99.49 | |
| 2csh_A | 110 | Zinc finger protein 297B; ZF-C2H2 domain, zinc fin | 99.49 | |
| 2csh_A | 110 | Zinc finger protein 297B; ZF-C2H2 domain, zinc fin | 99.48 | |
| 2wbs_A | 89 | Krueppel-like factor 4; transcription-DNA complex, | 99.48 | |
| 4gzn_C | 60 | ZFP-57, zinc finger protein 57; transcription-DNA | 99.47 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.46 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.46 | |
| 1x6h_A | 86 | Transcriptional repressor CTCF; zinc finger protei | 99.45 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.45 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.42 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.42 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.39 | |
| 1x6h_A | 86 | Transcriptional repressor CTCF; zinc finger protei | 99.37 | |
| 2cot_A | 77 | Zinc finger protein 435; ADK_LID domain, zinc fing | 99.37 | |
| 2cot_A | 77 | Zinc finger protein 435; ADK_LID domain, zinc fing | 99.36 | |
| 2j7j_A | 85 | Transcription factor IIIA; zinc finger module, alt | 99.36 | |
| 2gqj_A | 98 | Zinc finger protein KIAA1196; ZF-C2H2 like domain, | 99.35 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.35 | |
| 2j7j_A | 85 | Transcription factor IIIA; zinc finger module, alt | 99.34 | |
| 2dlk_A | 79 | Novel protein; ZF-C2H2 domain, zinc finger protein | 99.33 | |
| 2wbt_A | 129 | B-129; zinc finger; 2.70A {Sulfolobus virus 1} | 99.32 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.32 | |
| 1llm_C | 88 | Chimera of ZIF23-GCN4; dimerization, DNA recogniti | 99.31 | |
| 2ghf_A | 102 | ZHX1, zinc fingers and homeoboxes protein 1; C2H2 | 99.31 | |
| 2lce_A | 74 | B-cell lymphoma 6 protein; structural genomics, no | 99.3 | |
| 1llm_C | 88 | Chimera of ZIF23-GCN4; dimerization, DNA recogniti | 99.29 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.29 | |
| 2ctd_A | 96 | Zinc finger protein 512; zinc binding, two ZF-C2H2 | 99.28 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.27 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.27 | |
| 2ctd_A | 96 | Zinc finger protein 512; zinc binding, two ZF-C2H2 | 99.26 | |
| 2ctu_A | 73 | Zinc finger protein 483; zinc finger domain, struc | 99.26 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.26 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.24 | |
| 1x6e_A | 72 | Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca | 99.23 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.23 | |
| 2gqj_A | 98 | Zinc finger protein KIAA1196; ZF-C2H2 like domain, | 99.23 | |
| 2lce_A | 74 | B-cell lymphoma 6 protein; structural genomics, no | 99.22 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.21 | |
| 2ghf_A | 102 | ZHX1, zinc fingers and homeoboxes protein 1; C2H2 | 99.2 | |
| 1x5w_A | 70 | Zinc finger protein 64, isoforms 1; ZNF338, nuclea | 99.2 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.19 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.19 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.18 | |
| 2wbt_A | 129 | B-129; zinc finger; 2.70A {Sulfolobus virus 1} | 99.17 | |
| 2ct1_A | 77 | Transcriptional repressor CTCF; CCCTC-BINDING fact | 99.17 | |
| 1x6e_A | 72 | Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca | 99.15 | |
| 1x5w_A | 70 | Zinc finger protein 64, isoforms 1; ZNF338, nuclea | 99.15 | |
| 2ct1_A | 77 | Transcriptional repressor CTCF; CCCTC-BINDING fact | 99.14 | |
| 2lv2_A | 85 | Insulinoma-associated protein 1; structural genomi | 99.13 | |
| 2lv2_A | 85 | Insulinoma-associated protein 1; structural genomi | 99.12 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.11 | |
| 1f2i_G | 73 | Fusion of N-terminal 17-MER peptide extension to Z | 99.11 | |
| 2drp_A | 66 | Protein (tramtrack DNA-binding domain); protein-DN | 99.1 | |
| 2ctu_A | 73 | Zinc finger protein 483; zinc finger domain, struc | 99.1 | |
| 2d9h_A | 78 | Zinc finger protein 692; ZF-C2H2 domain, structura | 99.08 | |
| 3uk3_C | 57 | Zinc finger protein 217; transcription factor, DNA | 99.07 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.06 | |
| 2drp_A | 66 | Protein (tramtrack DNA-binding domain); protein-DN | 99.05 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.05 | |
| 1bbo_A | 57 | Human enhancer-binding protein MBP-1; DNA-binding | 99.04 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.03 | |
| 1bbo_A | 57 | Human enhancer-binding protein MBP-1; DNA-binding | 99.02 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.01 | |
| 3uk3_C | 57 | Zinc finger protein 217; transcription factor, DNA | 98.99 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 98.97 | |
| 2ej4_A | 95 | Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi | 98.96 | |
| 2adr_A | 60 | ADR1; transcription regulation, zinc finger,; NMR | 98.95 | |
| 2d9h_A | 78 | Zinc finger protein 692; ZF-C2H2 domain, structura | 98.95 | |
| 2ej4_A | 95 | Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi | 98.94 | |
| 2adr_A | 60 | ADR1; transcription regulation, zinc finger,; NMR | 98.94 | |
| 2ytn_A | 46 | Zinc finger protein 347; ZF-C2H2, structural genom | 98.89 | |
| 2em0_A | 46 | Zinc finger protein 224; DNA-binding, metal-bindin | 98.88 | |
| 2ely_A | 46 | Zinc finger protein 224; DNA-binding, metal-bindin | 98.87 | |
| 2elz_A | 46 | Zinc finger protein 224; DNA-binding, metal-bindin | 98.87 | |
| 2emf_A | 46 | Zinc finger protein 484; ZF-C2H2, structural genom | 98.87 | |
| 2epz_A | 46 | Zinc finger protein 28 homolog; C2H2, zinc finger | 98.87 | |
| 2ytq_A | 46 | Zinc finger protein 268; ZF-C2H2, structural genom | 98.87 | |
| 2eq4_A | 46 | Zinc finger protein 224; C2H2, zinc finger domain, | 98.87 | |
| 2emk_A | 46 | Zinc finger protein 28 homolog; ZF-C2H2, structura | 98.87 | |
| 2el4_A | 46 | Zinc finger protein 268; alternative splicing, DNA | 98.87 | |
| 2ene_A | 46 | Zinc finger protein 347; ZF-C2H2, structural genom | 98.86 | |
| 2emx_A | 44 | Zinc finger protein 268; ZF-C2H2, structural genom | 98.86 | |
| 2em7_A | 46 | Zinc finger protein 224; ZF-C2H2, structural genom | 98.86 | |
| 2eoe_A | 46 | Zinc finger protein 347; ZF-C2H2, structural genom | 98.86 | |
| 2eml_A | 46 | Zinc finger protein 28 homolog; ZF-C2H2, structura | 98.86 | |
| 2emm_A | 46 | ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s | 98.86 | |
| 2ep2_A | 46 | Zinc finger protein 484; ZF-C2H2, structural genom | 98.86 | |
| 2eop_A | 46 | Zinc finger protein 268; ZF-C2H2, structural genom | 98.86 | |
| 2emk_A | 46 | Zinc finger protein 28 homolog; ZF-C2H2, structura | 98.86 | |
| 1f2i_G | 73 | Fusion of N-terminal 17-MER peptide extension to Z | 98.86 | |
| 2eoq_A | 46 | Zinc finger protein 224; ZF-C2H2, structural genom | 98.85 | |
| 2ytr_A | 46 | Zinc finger protein 347; ZF-C2H2, structural genom | 98.85 | |
| 2ema_A | 46 | Zinc finger protein 347; ZF-C2H2, structural genom | 98.85 | |
| 2eq0_A | 46 | Zinc finger protein 347; C2H2, zinc finger domain, | 98.85 | |
| 2eml_A | 46 | Zinc finger protein 28 homolog; ZF-C2H2, structura | 98.85 | |
| 2em9_A | 46 | Zinc finger protein 224; ZF-C2H2, structural genom | 98.85 | |
| 2em0_A | 46 | Zinc finger protein 224; DNA-binding, metal-bindin | 98.85 | |
| 2ytj_A | 46 | Zinc finger protein 484; ZF-C2H2, structural genom | 98.85 | |
| 2ytg_A | 46 | ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s | 98.85 | |
| 2ytn_A | 46 | Zinc finger protein 347; ZF-C2H2, structural genom | 98.85 | |
| 2eoq_A | 46 | Zinc finger protein 224; ZF-C2H2, structural genom | 98.85 | |
| 2eoo_A | 46 | ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s | 98.85 | |
| 2eq4_A | 46 | Zinc finger protein 224; C2H2, zinc finger domain, | 98.84 | |
| 2eme_A | 46 | Zinc finger protein 473; ZF-C2H2, structural genom | 98.84 | |
| 2eov_A | 46 | Zinc finger protein 484; ZF-C2H2, structural genom | 98.84 | |
| 2epw_A | 46 | Zinc finger protein 268; C2H2, zinc finger domain, | 98.84 | |
| 2en1_A | 46 | Zinc finger protein 224; ZF-C2H2, structural genom | 98.84 | |
| 2en8_A | 46 | Zinc finger protein 224; ZF-C2H2, structural genom | 98.84 | |
| 2ep2_A | 46 | Zinc finger protein 484; ZF-C2H2, structural genom | 98.84 | |
| 2em5_A | 46 | ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s | 98.84 | |
| 2emm_A | 46 | ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s | 98.84 | |
| 2el4_A | 46 | Zinc finger protein 268; alternative splicing, DNA | 98.84 | |
| 2yu8_A | 46 | Zinc finger protein 347; ZF-C2H2, structural genom | 98.84 | |
| 2ytd_A | 46 | Zinc finger protein 473; ZF-C2H2, structural genom | 98.84 | |
| 2ema_A | 46 | Zinc finger protein 347; ZF-C2H2, structural genom | 98.84 | |
| 2emy_A | 46 | Zinc finger protein 268; ZF-C2H2, structural genom | 98.84 | |
| 2emf_A | 46 | Zinc finger protein 484; ZF-C2H2, structural genom | 98.84 | |
| 2enc_A | 46 | Zinc finger protein 224; ZF-C2H2, structural genom | 98.83 | |
| 2emx_A | 44 | Zinc finger protein 268; ZF-C2H2, structural genom | 98.83 | |
| 2ely_A | 46 | Zinc finger protein 224; DNA-binding, metal-bindin | 98.83 | |
| 2ytj_A | 46 | Zinc finger protein 484; ZF-C2H2, structural genom | 98.83 | |
| 2ytk_A | 46 | Zinc finger protein 347; ZF-C2H2, structural genom | 98.83 | |
| 2eop_A | 46 | Zinc finger protein 268; ZF-C2H2, structural genom | 98.83 | |
| 2emp_A | 46 | Zinc finger protein 347; ZF-C2H2, structural genom | 98.83 | |
| 2emp_A | 46 | Zinc finger protein 347; ZF-C2H2, structural genom | 98.83 | |
| 2eov_A | 46 | Zinc finger protein 484; ZF-C2H2, structural genom | 98.83 | |
| 2en8_A | 46 | Zinc finger protein 224; ZF-C2H2, structural genom | 98.83 | |
| 2eoe_A | 46 | Zinc finger protein 347; ZF-C2H2, structural genom | 98.83 | |
| 2eod_A | 66 | TNF receptor-associated factor 4; zinc binding, NF | 98.83 | |
| 2ene_A | 46 | Zinc finger protein 347; ZF-C2H2, structural genom | 98.83 | |
| 2yso_A | 46 | ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s | 98.83 | |
| 2el6_A | 46 | Zinc finger protein 268; alternative splicing, DNA | 98.83 | |
| 2ysp_A | 46 | Zinc finger protein 224; ZF-C2H2, structural genom | 98.83 | |
| 2ytk_A | 46 | Zinc finger protein 347; ZF-C2H2, structural genom | 98.83 | |
| 2emh_A | 46 | Zinc finger protein 484; ZF-C2H2, structural genom | 98.83 | |
| 2emh_A | 46 | Zinc finger protein 484; ZF-C2H2, structural genom | 98.82 | |
| 2epz_A | 46 | Zinc finger protein 28 homolog; C2H2, zinc finger | 98.82 | |
| 2ytd_A | 46 | Zinc finger protein 473; ZF-C2H2, structural genom | 98.82 | |
| 2eoo_A | 46 | ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s | 98.82 | |
| 2emy_A | 46 | Zinc finger protein 268; ZF-C2H2, structural genom | 98.82 | |
| 2elz_A | 46 | Zinc finger protein 224; DNA-binding, metal-bindin | 98.82 | |
| 2ytr_A | 46 | Zinc finger protein 347; ZF-C2H2, structural genom | 98.82 | |
| 2ytm_A | 46 | Zinc finger protein 28 homolog; ZF-C2H2, structura | 98.82 | |
| 2epw_A | 46 | Zinc finger protein 268; C2H2, zinc finger domain, | 98.82 | |
| 2eq0_A | 46 | Zinc finger protein 347; C2H2, zinc finger domain, | 98.82 | |
| 2epa_A | 72 | Krueppel-like factor 10; transforming growth facto | 98.82 | |
| 2ep3_A | 46 | Zinc finger protein 484; ZF-C2H2, structural genom | 98.82 | |
| 2ytq_A | 46 | Zinc finger protein 268; ZF-C2H2, structural genom | 98.82 | |
| 2em5_A | 46 | ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s | 98.82 | |
| 2eme_A | 46 | Zinc finger protein 473; ZF-C2H2, structural genom | 98.81 | |
| 2en6_A | 46 | Zinc finger protein 268; ZF-C2H2, structural genom | 98.81 | |
| 2yso_A | 46 | ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s | 98.81 | |
| 2yu8_A | 46 | Zinc finger protein 347; ZF-C2H2, structural genom | 98.81 | |
| 2em7_A | 46 | Zinc finger protein 224; ZF-C2H2, structural genom | 98.81 | |
| 2en6_A | 46 | Zinc finger protein 268; ZF-C2H2, structural genom | 98.81 | |
| 2em9_A | 46 | Zinc finger protein 224; ZF-C2H2, structural genom | 98.81 | |
| 2ep3_A | 46 | Zinc finger protein 484; ZF-C2H2, structural genom | 98.81 | |
| 2en1_A | 46 | Zinc finger protein 224; ZF-C2H2, structural genom | 98.81 | |
| 2epa_A | 72 | Krueppel-like factor 10; transforming growth facto | 98.8 | |
| 2el6_A | 46 | Zinc finger protein 268; alternative splicing, DNA | 98.8 | |
| 2enc_A | 46 | Zinc finger protein 224; ZF-C2H2, structural genom | 98.8 | |
| 2epx_A | 47 | Zinc finger protein 28 homolog; C2H2, zinc finger | 98.8 | |
| 2ytm_A | 46 | Zinc finger protein 28 homolog; ZF-C2H2, structura | 98.79 | |
| 2em8_A | 46 | Zinc finger protein 224; ZF-C2H2, structural genom | 98.79 | |
| 2el5_A | 42 | Zinc finger protein 268; alternative splicing, DNA | 98.78 | |
| 2ytg_A | 46 | ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s | 98.78 | |
| 2ysp_A | 46 | Zinc finger protein 224; ZF-C2H2, structural genom | 98.78 | |
| 1vd4_A | 62 | Transcription initiation factor IIE, alpha subunit | 98.78 | |
| 2yte_A | 42 | Zinc finger protein 473; ZF-C2H2, structural genom | 98.78 | |
| 2eod_A | 66 | TNF receptor-associated factor 4; zinc binding, NF | 98.77 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 98.77 | |
| 2em8_A | 46 | Zinc finger protein 224; ZF-C2H2, structural genom | 98.77 | |
| 2eps_A | 54 | POZ-, at HOOK-, and zinc finger-containing protein | 98.77 | |
| 2epx_A | 47 | Zinc finger protein 28 homolog; C2H2, zinc finger | 98.76 | |
| 2em2_A | 46 | Zinc finger protein 28 homolog; ZF-C2H2, structura | 98.76 | |
| 2em2_A | 46 | Zinc finger protein 28 homolog; ZF-C2H2, structura | 98.76 | |
| 2eq2_A | 46 | Zinc finger protein 347; C2H2, zinc finger domain, | 98.76 | |
| 2yth_A | 46 | Zinc finger protein 224; ZF-C2H2, structural genom | 98.75 | |
| 2enf_A | 46 | Zinc finger protein 347; ZF-C2H2, structural genom | 98.75 | |
| 2ytp_A | 46 | Zinc finger protein 484; ZF-C2H2, structural genom | 98.75 | |
| 2en7_A | 44 | Zinc finger protein 268; ZF-C2H2, structural genom | 98.75 |
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=280.74 Aligned_cols=246 Identities=25% Similarity=0.322 Sum_probs=191.2
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCc-ccCCCeEEEEcC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECP-AQLSRLHIIEGD 293 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~-~~~~~v~~v~gD 293 (851)
.+++|+|||||||||||++|+++|++.| .+|++++|...... ..+..+ ....+ ...++++++.+|
T Consensus 22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~--~~~~~~---------~~~~~~~~~~~~~~~~~D 87 (351)
T 3ruf_A 22 IFSPKTWLITGVAGFIGSNLLEKLLKLN---QVVIGLDNFSTGHQ--YNLDEV---------KTLVSTEQWSRFCFIEGD 87 (351)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCH--HHHHHH---------HHTSCHHHHTTEEEEECC
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCCCCch--hhhhhh---------hhccccccCCceEEEEcc
Confidence 4678999999999999999999999998 78999999776431 222111 11100 011589999999
Q ss_pred CCCCcCCCCHHHHHHHhcCccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc-
Q psy11859 294 ILQANLGIKDSDLLMLQEEVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK- 369 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~- 369 (851)
++|++ ++..+++++|+|||+||..... .++...+++|+.||.+|+++|++.+ +++|||+||+.+|+...
T Consensus 88 l~d~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~~v~~SS~~vyg~~~~ 160 (351)
T 3ruf_A 88 IRDLT------TCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQ-VQSFTYAASSSTYGDHPA 160 (351)
T ss_dssp TTCHH------HHHHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT-CSEEEEEEEGGGGTTCCC
T ss_pred CCCHH------HHHHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEecHHhcCCCCC
Confidence 99886 8899999999999999987654 3456789999999999999999986 89999999998887653
Q ss_pred -ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCC
Q psy11859 370 -VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 370 -~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~ 446 (851)
+++|+.+..|.++ |+.||+.+|+++..++. +++++|+||++||||+..
T Consensus 161 ~~~~E~~~~~p~~~-----------------------------Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~ 211 (351)
T 3ruf_A 161 LPKVEENIGNPLSP-----------------------------YAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQD 211 (351)
T ss_dssp SSBCTTCCCCCCSH-----------------------------HHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCC
T ss_pred CCCccCCCCCCCCh-----------------------------hHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCC
Confidence 7888877776666 99999999999988765 999999999999999875
Q ss_pred C-------chhHhhhh-cCCceEEEEccc---------CceeEEEeecC---CCCccEEEEeCCCCccccHHHHHHHHHH
Q psy11859 447 P-------VPGWVDSL-NGPVGVLVASGK---------GVVRSMILNDL---STETQVFNISSNEVEAITWGEIISRGKQ 506 (851)
Q Consensus 447 p-------~p~~i~~~-~~~~~~~~~~g~---------~v~~~~~~~~~---~~~~~iyni~~~~~~~~t~~el~~~~~~ 506 (851)
+ ++.++..+ .+....+.+.|. |+++++..... ...+++||++++ .++|+.|+++.+.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~ni~~~--~~~s~~e~~~~i~~ 289 (351)
T 3ruf_A 212 PNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKDSAKDNIYNVAVG--DRTTLNELSGYIYD 289 (351)
T ss_dssp CCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCGGGCSEEEEESCS--CCEEHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhhccccCCCEEEeCCC--CcccHHHHHHHHHH
Confidence 4 46677764 444444445543 33333332222 236789999998 68999999999999
Q ss_pred HhhcCC
Q psy11859 507 LIYQYP 512 (851)
Q Consensus 507 ~~~~~p 512 (851)
.+|..+
T Consensus 290 ~~g~~~ 295 (351)
T 3ruf_A 290 ELNLIH 295 (351)
T ss_dssp HHHTTC
T ss_pred HhCccc
Confidence 999743
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=273.99 Aligned_cols=228 Identities=21% Similarity=0.199 Sum_probs=183.0
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+|+|||||||||||++|+++|++.| .+|++++|..... . .++++++.+|++ +
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~-----------------------~-~~~~~~~~~Dl~-~ 53 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDG---NTPIILTRSIGNK-----------------------A-INDYEYRVSDYT-L 53 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCCC-----------------------------CCEEEECCCC-H
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC---CEEEEEeCCCCcc-----------------------c-CCceEEEEcccc-H
Confidence 4799999999999999999999998 6899999983221 0 127889999999 7
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--cccccc
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--VLEEKL 375 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~i~E~~ 375 (851)
+ ++..+++++|+|||+||..... ++...+++|+.||.+|+++|++.+ +++|||+||+++++... +++|+.
T Consensus 54 ~------~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~n~~~~~~ll~a~~~~~-~~r~v~~SS~~vyg~~~~~~~~E~~ 125 (311)
T 3m2p_A 54 E------DLINQLNDVDAVVHLAATRGSQ-GKISEFHDNEILTQNLYDACYENN-ISNIVYASTISAYSDETSLPWNEKE 125 (311)
T ss_dssp H------HHHHHTTTCSEEEECCCCCCSS-SCGGGTHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGCCCGGGCSBCTTS
T ss_pred H------HHHHhhcCCCEEEEccccCCCC-ChHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEccHHHhCCCCCCCCCCCC
Confidence 6 8888999999999999988766 556788999999999999999985 99999999998888653 788887
Q ss_pred CCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC---chh
Q psy11859 376 YPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP---VPG 450 (851)
Q Consensus 376 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p---~p~ 450 (851)
+..|.++ |+.||+.+|+++..+.. +++++|+||++||||...+ ++.
T Consensus 126 ~~~p~~~-----------------------------Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~ 176 (311)
T 3m2p_A 126 LPLPDLM-----------------------------YGVSKLACEHIGNIYSRKKGLCIKNLRFAHLYGFNEKNNYMINR 176 (311)
T ss_dssp CCCCSSH-----------------------------HHHHHHHHHHHHHHHHHHSCCEEEEEEECEEECSCC--CCHHHH
T ss_pred CCCCCch-----------------------------hHHHHHHHHHHHHHHHHHcCCCEEEEeeCceeCcCCCCCCHHHH
Confidence 7777666 99999999999998765 9999999999999998863 667
Q ss_pred HhhhhcCCceEEE-EcccC---------ceeEEEeecCCC-CccEEEEeCCCCccccHHHHHHHHHHHhhcCC
Q psy11859 451 WVDSLNGPVGVLV-ASGKG---------VVRSMILNDLST-ETQVFNISSNEVEAITWGEIISRGKQLIYQYP 512 (851)
Q Consensus 451 ~i~~~~~~~~~~~-~~g~~---------v~~~~~~~~~~~-~~~iyni~~~~~~~~t~~el~~~~~~~~~~~p 512 (851)
++..+..+.++.+ +.+.. +++++....+.. .+++||++++ .++|+.|+++.+.+.+|..+
T Consensus 177 ~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~~~~~~~~i~~~--~~~s~~e~~~~i~~~~g~~~ 247 (311)
T 3m2p_A 177 FFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEKVSGTFNIGSG--DALTNYEVANTINNAFGNKD 247 (311)
T ss_dssp HHHHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHTTCTTCCEEEEECCS--CEECHHHHHHHHHHHTTCTT
T ss_pred HHHHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHHHhcCCCCCeEEeCCC--CcccHHHHHHHHHHHhCCCC
Confidence 7777554444444 44443 333332222233 6889999998 68999999999999988643
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-31 Score=308.52 Aligned_cols=297 Identities=23% Similarity=0.263 Sum_probs=207.6
Q ss_pred ccCcccCcccccccccccCccccccccchhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCc-cEEEEEecCCCCCCHHH
Q psy11859 184 WFTSAANQSVDYVGDVKRGSCECADMGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDI-GKVYILCRAKRGLTPKA 262 (851)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v-~~V~~l~R~~~~~~~~~ 262 (851)
..++...++.+.++.+.... +......++|+|||||||||||++|+++|++.++ + .+|++++|........+
T Consensus 45 ~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~-~g~~V~~l~R~~~~~~~~~ 117 (478)
T 4dqv_A 45 HASDLTLDRFIDADTLATAV------NLPGPSPELRTVLLTGATGFLGRYLVLELLRRLD-VDGRLICLVRAESDEDARR 117 (478)
T ss_dssp EGGGCCGGGTSCHHHHHHHH------TSCCCCSCCCEEEEECTTSHHHHHHHHHHHHHSC-TTCEEEEEECSSSHHHHHH
T ss_pred ecccCCHHHhcccccccCCC------CCCCCCCCCCEEEEECCCcHHHHHHHHHHHhcCC-CCCEEEEEECCCCcHHHHH
Confidence 33445555555544432211 1122346789999999999999999999999832 2 79999999987655556
Q ss_pred HHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHH
Q psy11859 263 RLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQR 342 (851)
Q Consensus 263 rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ 342 (851)
++.+.+.....+.+....+....+++++.||++++++||+.+++..+++++|+|||+||.+++ .++.+.+++||.||.+
T Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~-~~~~~~~~~Nv~gt~~ 196 (478)
T 4dqv_A 118 RLEKTFDSGDPELLRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA-FPYHELFGPNVAGTAE 196 (478)
T ss_dssp HHHGGGCSSCHHHHHHHHHHHTTTEEEEECCTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB-SSCCEEHHHHHHHHHH
T ss_pred HHHHHHHhcchhhhhhhhhhccCceEEEEeECCCcccCCCHHHHHHHHcCCCEEEECccccCC-cCHHHHHHHHHHHHHH
Confidence 665554432111111111223468999999999999999999999999999999999999988 6667789999999999
Q ss_pred HHHHHHhcCCceEEEEeeeeeeeCCCc--ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHH
Q psy11859 343 LLDIALKMKKLVAFIHFSTAFCHPDQK--VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTE 420 (851)
Q Consensus 343 ll~~a~~~~~~~~fV~vSTa~~~~~~~--~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE 420 (851)
|+++|.+.+ +++|||+||+++++... ++.|+....|.++ +......++|.|+.||+++|
T Consensus 197 ll~aa~~~~-~~~~V~iSS~~v~~~~~~~~~~E~~~~~p~~~------------------~~~~~~~~~~~Y~~sK~~~E 257 (478)
T 4dqv_A 197 LIRIALTTK-LKPFTYVSTADVGAAIEPSAFTEDADIRVISP------------------TRTVDGGWAGGYGTSKWAGE 257 (478)
T ss_dssp HHHHHTSSS-CCCEEEEEEGGGGTTSCTTTCCSSSCHHHHCC------------------EEECCTTSEECHHHHHHHHH
T ss_pred HHHHHHhCC-CCeEEEEeehhhcCccCCCCcCCcccccccCc------------------ccccccccccchHHHHHHHH
Confidence 999998875 89999999998887532 4555543322222 11223456688999999999
Q ss_pred HHHHHHhC--CCCEEEEecccccCCCC-C---CchhHhhhh-----c-CCceE----------------EEEcccCceeE
Q psy11859 421 TLVDEYKT--KLPVVIVRPSIVLPSFQ-E---PVPGWVDSL-----N-GPVGV----------------LVASGKGVVRS 472 (851)
Q Consensus 421 ~~v~~~~~--~l~~~ivRp~~V~G~~~-~---p~p~~i~~~-----~-~~~~~----------------~~~~g~~v~~~ 472 (851)
++++.+.. +++++|+||++|||+.. . ....|+..+ . |..+. -+...+|++++
T Consensus 258 ~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~~~~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~a 337 (478)
T 4dqv_A 258 VLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEA 337 (478)
T ss_dssp HHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHHHHHHHHHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHHHHHHHHHHcCcccccccccccccccccceeeeeeHHHHHHH
Confidence 99998865 99999999999999854 1 233343331 1 11111 11112344444
Q ss_pred EEeec------CCCCccEEEEeCCCCccccHHHHHHHHHHH
Q psy11859 473 MILND------LSTETQVFNISSNEVEAITWGEIISRGKQL 507 (851)
Q Consensus 473 ~~~~~------~~~~~~iyni~~~~~~~~t~~el~~~~~~~ 507 (851)
+.... ....+++||+++++.+++||.|+++.+.+.
T Consensus 338 i~~~~~~~~~~~~~~~~~ynv~~~~~~~~s~~el~~~l~~~ 378 (478)
T 4dqv_A 338 IAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYVDWLIEA 378 (478)
T ss_dssp HHHHHHTTC-CCCCSEEEEEESCCCCSSCSHHHHHHHHHHT
T ss_pred HHHHHhhcccCCCCCCceEEecCCCCCCcCHHHHHHHHHHc
Confidence 43221 234678999999854459999999999986
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-29 Score=278.83 Aligned_cols=242 Identities=23% Similarity=0.267 Sum_probs=183.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
.++|+|||||||||||++|+++|++.|++ ..|++++|....... .++ ... ...++++++.+|++
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~-~~v~~~~~~~~~~~~-~~l------------~~~--~~~~~~~~~~~Dl~ 85 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYET-YKIINFDALTYSGNL-NNV------------KSI--QDHPNYYFVKGEIQ 85 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTT-EEEEEEECCCTTCCG-GGG------------TTT--TTCTTEEEEECCTT
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCC-cEEEEEeccccccch-hhh------------hhh--ccCCCeEEEEcCCC
Confidence 46789999999999999999999999865 478888886533211 111 100 11248999999999
Q ss_pred CCcCCCCHHHHHHHhcC--ccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC--
Q psy11859 296 QANLGIKDSDLLMLQEE--VSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ-- 368 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~--vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~-- 368 (851)
|++ .+..++++ +|+|||+||..... .++...+++|+.||.+|+++|++.+ +++|||+||+++|+..
T Consensus 86 d~~------~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~~v~~SS~~vy~~~~~ 158 (346)
T 4egb_A 86 NGE------LLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYP-HIKLVQVSTDEVYGSLGK 158 (346)
T ss_dssp CHH------HHHHHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHST-TSEEEEEEEGGGGCCCCS
T ss_pred CHH------HHHHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEeCchHHhCCCCc
Confidence 886 78888876 99999999987654 4566789999999999999999985 8999999999888864
Q ss_pred -cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCC
Q psy11859 369 -KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 369 -~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~ 445 (851)
.+++|+.+..|.++ |+.||+.+|.++..++. +++++|+||++||||..
T Consensus 159 ~~~~~E~~~~~p~~~-----------------------------Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~ 209 (346)
T 4egb_A 159 TGRFTEETPLAPNSP-----------------------------YSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQ 209 (346)
T ss_dssp SCCBCTTSCCCCCSH-----------------------------HHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTC
T ss_pred CCCcCCCCCCCCCCh-----------------------------hHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCC
Confidence 37888877776666 99999999999998765 99999999999999987
Q ss_pred CC---chhHhhhhcCCce-EEEEcccCceeEEEeec---------C-CCCccEEEEeCCCCccccHHHHHHHHHHHhhcC
Q psy11859 446 EP---VPGWVDSLNGPVG-VLVASGKGVVRSMILND---------L-STETQVFNISSNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 446 ~p---~p~~i~~~~~~~~-~~~~~g~~v~~~~~~~~---------~-~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
.+ ++.++..+..+.+ .+.+.|......++..+ + ...+++||++++ .++|+.|+++.+.+.+|..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~g~~~~i~~~--~~~s~~e~~~~i~~~~g~~ 287 (346)
T 4egb_A 210 YPEKLIPLMVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDVVLHKGRVGEVYNIGGN--NEKTNVEVVEQIITLLGKT 287 (346)
T ss_dssp CTTSHHHHHHHHHHTTCCCEEETTSCCEECEEEHHHHHHHHHHHHHHCCTTCEEEECCS--CCEEHHHHHHHHHHHHTCC
T ss_pred CccchHHHHHHHHHcCCCceeeCCCCeEEeeEEHHHHHHHHHHHHhcCCCCCEEEECCC--CceeHHHHHHHHHHHhCCC
Confidence 54 6777777544443 34444433322222211 1 346789999998 6899999999999999863
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-29 Score=275.05 Aligned_cols=230 Identities=21% Similarity=0.172 Sum_probs=179.5
Q ss_pred hhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 213 ARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 213 ~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
..-.++|+|||||||||||++|+++|++.| .+|++++|.... .+++++.+
T Consensus 14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G---~~V~~~~r~~~~---------------------------~~~~~~~~ 63 (347)
T 4id9_A 14 LVPRGSHMILVTGSAGRVGRAVVAALRTQG---RTVRGFDLRPSG---------------------------TGGEEVVG 63 (347)
T ss_dssp -------CEEEETTTSHHHHHHHHHHHHTT---CCEEEEESSCCS---------------------------SCCSEEES
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHhCC---CEEEEEeCCCCC---------------------------CCccEEec
Confidence 344678999999999999999999999998 678999997643 26778999
Q ss_pred CCCCCcCCCCHHHHHHHhcCccEEEEccccCCcch-hHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC---
Q psy11859 293 DILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEA-ELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ--- 368 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~-~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~--- 368 (851)
|++|++ ++..+++++|+|||+||...... .....+++|+.||.+|+++|++.+ +++|||+||+++|+..
T Consensus 64 Dl~d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~~V~~SS~~vyg~~~~~ 136 (347)
T 4id9_A 64 SLEDGQ------ALSDAIMGVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAG-VRRFVFASSGEVYPENRPE 136 (347)
T ss_dssp CTTCHH------HHHHHHTTCSEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTT-CSEEEEEEEGGGTTTTSCS
T ss_pred CcCCHH------HHHHHHhCCCEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEECCHHHhCCCCCC
Confidence 999886 88889999999999999887653 447889999999999999999875 8999999999998762
Q ss_pred -cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEeccccc----
Q psy11859 369 -KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVL---- 441 (851)
Q Consensus 369 -~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~---- 441 (851)
.++.|+.+..|.++ |+.||+++|.++..+.. +++++|+||++||
T Consensus 137 ~~~~~E~~~~~~~~~-----------------------------Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~ 187 (347)
T 4id9_A 137 FLPVTEDHPLCPNSP-----------------------------YGLTKLLGEELVRFHQRSGAMETVILRFSHTQDATE 187 (347)
T ss_dssp SSSBCTTSCCCCCSH-----------------------------HHHHHHHHHHHHHHHHHHSSSEEEEEEECEEECGGG
T ss_pred CCCcCCCCCCCCCCh-----------------------------HHHHHHHHHHHHHHHHHhcCCceEEEccceEeeccc
Confidence 26888876666655 99999999999998764 8999999999999
Q ss_pred ---------CCCCC--------------CchhHhhhhcCCce-EEEEcccCceeE----EEee---------cCC--CCc
Q psy11859 442 ---------PSFQE--------------PVPGWVDSLNGPVG-VLVASGKGVVRS----MILN---------DLS--TET 482 (851)
Q Consensus 442 ---------G~~~~--------------p~p~~i~~~~~~~~-~~~~~g~~v~~~----~~~~---------~~~--~~~ 482 (851)
||+.. .++.++..+..+.+ .+.+.|...... +... .+. ..+
T Consensus 188 ~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~~~~ 267 (347)
T 4id9_A 188 LLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSHILARNENGRPFRMHITDTRDMVAGILLALDHPEAAG 267 (347)
T ss_dssp TTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSCCEEEEECTTCCBCEECEEEHHHHHHHHHHHHHCGGGTT
T ss_pred ccccccccCCCCcccccccccccccchhHHHHHHHHHHcCCCeEEeCCCCcccCCccCcEeHHHHHHHHHHHhcCcccCC
Confidence 88632 35556666544444 555555433322 2221 112 347
Q ss_pred cEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 483 QVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 483 ~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
++||++++ .++|+.|+++.+.+.+|.
T Consensus 268 ~~~ni~~~--~~~s~~e~~~~i~~~~g~ 293 (347)
T 4id9_A 268 GTFNLGAD--EPADFAALLPKIAALTGL 293 (347)
T ss_dssp EEEEESCS--SCEEHHHHHHHHHHHHCC
T ss_pred CeEEECCC--CcccHHHHHHHHHHHhCC
Confidence 89999998 689999999999999885
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=269.79 Aligned_cols=307 Identities=16% Similarity=0.147 Sum_probs=198.2
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
..|+|||||||||||++|+++|++.| .+|++++|...... . +. ..+++++.+|++|
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~---~------------l~------~~~~~~~~~Dl~d 67 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAG---HDLVLIHRPSSQIQ---R------------LA------YLEPECRVAEMLD 67 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEECTTSCGG---G------------GG------GGCCEEEECCTTC
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEecChHhhh---h------------hc------cCCeEEEEecCCC
Confidence 44699999999999999999999998 78999999764310 0 10 0278899999998
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc---ccc
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK---VLE 372 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~---~i~ 372 (851)
++ ++..+++++|+|||+||..... .++.+.+++|+.||.+++++|.+.+ +++|||+||+++++... ..+
T Consensus 68 ~~------~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~v~~SS~~~~~~~~~~~~~~ 140 (342)
T 2x4g_A 68 HA------GLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQAR-VPRILYVGSAYAMPRHPQGLPGH 140 (342)
T ss_dssp HH------HHHHHTTTCSEEEEC------------CHHHHHHHHHHHHHHHHHHHT-CSCEEEECCGGGSCCCTTSSCBC
T ss_pred HH------HHHHHHcCCCEEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEECCHHhhCcCCCCCCCC
Confidence 76 8888999999999999976542 4567789999999999999999885 89999999998887543 236
Q ss_pred cccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-CCCEEEEecccccCCCC-CC-ch
Q psy11859 373 EKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-KLPVVIVRPSIVLPSFQ-EP-VP 449 (851)
Q Consensus 373 E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-~l~~~ivRp~~V~G~~~-~p-~p 449 (851)
|+.+..|... ..+.|+.||+.+|.++..++. +++++++||++||||.. .+ ++
T Consensus 141 E~~~~~p~~~-------------------------~~~~Y~~sK~~~e~~~~~~~~~g~~~~ilrp~~v~g~~~~~~~~~ 195 (342)
T 2x4g_A 141 EGLFYDSLPS-------------------------GKSSYVLCKWALDEQAREQARNGLPVVIGIPGMVLGELDIGPTTG 195 (342)
T ss_dssp TTCCCSSCCT-------------------------TSCHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEECSCCSSCSTT
T ss_pred CCCCCCcccc-------------------------ccChHHHHHHHHHHHHHHHhhcCCcEEEEeCCceECCCCccccHH
Confidence 6665555100 024499999999999988754 89999999999999986 31 66
Q ss_pred hHhhhhcCCceEEEE-------cccCceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHHHHhhcCCCCCccccCc
Q psy11859 450 GWVDSLNGPVGVLVA-------SGKGVVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGKQLIYQYPLEAGLWYPN 521 (851)
Q Consensus 450 ~~i~~~~~~~~~~~~-------~g~~v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~p~~~~~~~p~ 521 (851)
.++..+..+....++ ..+|+++++....+ ...+++||++++ . +|+.|+++.+.+.+|..+.. ..|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~g~~~~v~~~--~-~s~~e~~~~i~~~~g~~~~~---~~p~ 269 (342)
T 2x4g_A 196 RVITAIGNGEMTHYVAGQRNVIDAAEAGRGLLMALERGRIGERYLLTGH--N-LEMADLTRRIAELLGQPAPQ---PMSM 269 (342)
T ss_dssp HHHHHHHTTCCCEEECCEEEEEEHHHHHHHHHHHHHHSCTTCEEEECCE--E-EEHHHHHHHHHHHHTCCCCE---EECH
T ss_pred HHHHHHHcCCCccccCCCcceeeHHHHHHHHHHHHhCCCCCceEEEcCC--c-ccHHHHHHHHHHHhCCCCCC---cCCH
Confidence 777665443332222 11233333322221 223789999998 6 99999999999998863321 2232
Q ss_pred ceeccchHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhccccccCeEEEcChhHHHHHHhcCccCCC
Q psy11859 522 GQIRSNRFWHYFFVIFTQILPAYLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEYFTTRNWDFKNKRLLALHDNISEKDKQ 601 (851)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~lpa~~~d~~~~l~G~~p~l~~~~~ki~~~~~~~~~f~~~~w~f~~~n~~~l~~~l~~~d~~ 601 (851)
. .. ...+.+.+.+....|..|.+... .+. +....+.++++++++++
T Consensus 270 ~-------~~--------~~~~~~~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~d~~k~~~~l--------- 315 (342)
T 2x4g_A 270 A-------MA--------RALATLGRLRYRVSGQLPLLDET---------AIE-VMAGGQFLDGRKAREEL--------- 315 (342)
T ss_dssp H-------HH--------HHHHHHHHC-------------------------C-CTTCCCCBCCHHHHHHH---------
T ss_pred H-------HH--------HHHHHHHHHHHHhhCCCCCCCHH---------HHH-HHhcCcccChHHHHHhC---------
Confidence 1 00 11133344444445544433211 111 12456778999988753
Q ss_pred cccc-ccccCCHHHHHHHHHHHH
Q psy11859 602 TFYI-ANIDVNIDDYLKTIILGA 623 (851)
Q Consensus 602 ~F~~-d~~~i~W~~Y~~~~~~Gi 623 (851)
.+ .+ .+|++.+..++.-.
T Consensus 316 --G~~~p--~~~~~~l~~~~~~~ 334 (342)
T 2x4g_A 316 --GFFST--TALDDTLLRAIDWF 334 (342)
T ss_dssp --CCCCC--SCHHHHHHHHHHHH
T ss_pred --CCCCC--CCHHHHHHHHHHHH
Confidence 22 22 57888887776533
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=274.83 Aligned_cols=243 Identities=16% Similarity=0.222 Sum_probs=182.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHh-CCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRS-CPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~-g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
+++|+|||||||||||++|+++|++. | .+|++++|....... + ...++++++.+|+
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~~g---~~V~~~~r~~~~~~~---------------~-----~~~~~v~~~~~Dl 78 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILETTD---WEVFGMDMQTDRLGD---------------L-----VKHERMHFFEGDI 78 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHHSS---CEEEEEESCCTTTGG---------------G-----GGSTTEEEEECCT
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCC---CEEEEEeCChhhhhh---------------h-----ccCCCeEEEeCcc
Confidence 56799999999999999999999998 6 789999997654210 0 0124899999999
Q ss_pred C-CCcCCCCHHHHHHHhcCccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc-
Q psy11859 295 L-QANLGIKDSDLLMLQEEVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK- 369 (851)
Q Consensus 295 ~-~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~- 369 (851)
+ +++ .+..+++++|+|||+||..... .++.+.+++|+.||.+|+++|++.+ ++|||+||+.+|+...
T Consensus 79 ~~d~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~--~~~v~~SS~~vyg~~~~ 150 (372)
T 3slg_A 79 TINKE------WVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPSTSEVYGMCAD 150 (372)
T ss_dssp TTCHH------HHHHHHHHCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT--CEEEEECCGGGGBSCCC
T ss_pred CCCHH------HHHHHhccCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC--CcEEEeCcHHHhCCCCC
Confidence 9 665 7888888999999999988754 3566889999999999999999986 8999999998887643
Q ss_pred -ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCC
Q psy11859 370 -VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-KLPVVIVRPSIVLPSFQEP 447 (851)
Q Consensus 370 -~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-~l~~~ivRp~~V~G~~~~p 447 (851)
++.|+..+.+.+| .....+.|+.||+.+|+++..+.. +++++|+||++||||+..+
T Consensus 151 ~~~~e~~~~~~~~p----------------------~~~p~~~Y~~sK~~~E~~~~~~~~~g~~~~ilRp~~v~G~~~~~ 208 (372)
T 3slg_A 151 EQFDPDASALTYGP----------------------INKPRWIYACSKQLMDRVIWGYGMEGLNFTLFRPFNWIGPGLDS 208 (372)
T ss_dssp SSBCTTTCCEEECC----------------------TTCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSEECSSCCC
T ss_pred CCCCccccccccCC----------------------CCCCCCcHHHHHHHHHHHHHHHHHCCCCEEEEccccccCCCccc
Confidence 5666654421111 000124599999999999999876 8999999999999998653
Q ss_pred -----------chhHhhhhcCCceE-EEEccc---------CceeEEEeecCC----CCccEEEEeCCCCccccHHHHHH
Q psy11859 448 -----------VPGWVDSLNGPVGV-LVASGK---------GVVRSMILNDLS----TETQVFNISSNEVEAITWGEIIS 502 (851)
Q Consensus 448 -----------~p~~i~~~~~~~~~-~~~~g~---------~v~~~~~~~~~~----~~~~iyni~~~~~~~~t~~el~~ 502 (851)
++.++..+..+.++ +.+.|. |+++++....+. ..+++||++++. .++|+.|+++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~-~~~s~~e~~~ 287 (372)
T 3slg_A 209 IYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDGISALMKIIENSNGVATGKIYNIGNPN-NNFSVRELAN 287 (372)
T ss_dssp TTCSBSCSCHHHHHHHHHHHHTCCEEEGGGGCCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCTT-CEEEHHHHHH
T ss_pred ccccccccchHHHHHHHHHHcCCCcEEeCCCceEEEEEEHHHHHHHHHHHHhcccCcCCCceEEeCCCC-CCccHHHHHH
Confidence 55666664433333 334343 223322222222 468899999931 5899999999
Q ss_pred HHHHHhhcCC
Q psy11859 503 RGKQLIYQYP 512 (851)
Q Consensus 503 ~~~~~~~~~p 512 (851)
.+.+.+|..+
T Consensus 288 ~i~~~~g~~~ 297 (372)
T 3slg_A 288 KMLELAAEFP 297 (372)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHhCCCc
Confidence 9999998744
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=270.49 Aligned_cols=244 Identities=21% Similarity=0.137 Sum_probs=183.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHH--hCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLR--SCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~--~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
+++|+|||||||||||++|+++|++ .| .+|++++|.........+..+. +.........++.++.+|
T Consensus 8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g---~~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~D 76 (362)
T 3sxp_A 8 LENQTILITGGAGFVGSNLAFHFQENHPK---AKVVVLDKFRSNTLFSNNRPSS--------LGHFKNLIGFKGEVIAAD 76 (362)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHCTT---SEEEEEECCCCC-------CCC--------CCCGGGGTTCCSEEEECC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHhhCCC---CeEEEEECCCccccccccchhh--------hhhhhhccccCceEEECC
Confidence 5789999999999999999999999 66 7999999976532111110000 000000112367999999
Q ss_pred CCCCcCCCCHHHHHHH-hcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc-c
Q psy11859 294 ILQANLGIKDSDLLML-QEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK-V 370 (851)
Q Consensus 294 i~~~~lgls~~~~~~~-~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~-~ 370 (851)
+++++ ++..+ ..++|+|||+||.... ..++...+++|+.||.+|+++|++.+ ++ |||+||+++++... +
T Consensus 77 l~d~~------~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~~-~V~~SS~~vyg~~~~~ 148 (362)
T 3sxp_A 77 INNPL------DLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKK-AK-VIYASSAGVYGNTKAP 148 (362)
T ss_dssp TTCHH------HHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTT-CE-EEEEEEGGGGCSCCSS
T ss_pred CCCHH------HHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcC-Cc-EEEeCcHHHhCCCCCC
Confidence 99886 77777 7899999999997765 35678999999999999999999886 67 99999988887644 7
Q ss_pred cccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCC---
Q psy11859 371 LEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEP--- 447 (851)
Q Consensus 371 i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p--- 447 (851)
++|+.+..|.++ |+.||+.+|.++..++..++++++||++||||+..+
T Consensus 149 ~~E~~~~~p~~~-----------------------------Y~~sK~~~E~~~~~~~~~~~~~~lR~~~v~Gp~~~~~~~ 199 (362)
T 3sxp_A 149 NVVGKNESPENV-----------------------------YGFSKLCMDEFVLSHSNDNVQVGLRYFNVYGPREFYKEK 199 (362)
T ss_dssp BCTTSCCCCSSH-----------------------------HHHHHHHHHHHHHHTTTTSCEEEEEECSEESTTCGGGGG
T ss_pred CCCCCCCCCCCh-----------------------------hHHHHHHHHHHHHHHhccCCEEEEEeCceeCcCCCCCCc
Confidence 888877666666 999999999999998877999999999999998743
Q ss_pred ----chhHhhhhcCCceEEE-Eccc---------CceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHHHHhh
Q psy11859 448 ----VPGWVDSLNGPVGVLV-ASGK---------GVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQLIY 509 (851)
Q Consensus 448 ----~p~~i~~~~~~~~~~~-~~g~---------~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~~~~ 509 (851)
++.++..+..+.++.+ +.|. |+++++....+....++||++++ .++|+.|+++.+.+.++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~ai~~~~~~~~~g~~~i~~~--~~~s~~e~~~~i~~~~g 273 (362)
T 3sxp_A 200 TASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQANVKAMKAQKSGVYNVGYS--QARSYNEIVSILKEHLG 273 (362)
T ss_dssp GSCHHHHHHHHHHTTSEEECSGGGCCEEECEEHHHHHHHHHHHTTCSSCEEEEESCS--CEEEHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHhCCCeEEECCCCeEEccEEHHHHHHHHHHHHhcCCCCEEEeCCC--CCccHHHHHHHHHHHcC
Confidence 5566666544444433 4432 33333333333332339999998 68999999999999988
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=277.86 Aligned_cols=248 Identities=20% Similarity=0.180 Sum_probs=174.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
..+|+|||||||||||++|+++|++.| .+|++++|........+++.+.+....-..+. .....++.++.||++
T Consensus 67 ~~~~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~---~~~~~~v~~v~~Dl~ 140 (427)
T 4f6c_A 67 RPLGNTLLTGATGFLGAYLIEALQGYS---HRIYCFIRADNEEIAWYKLMTNLNDYFSEETV---EMMLSNIEVIVGDFE 140 (427)
T ss_dssp CCCEEEEEECTTSHHHHHHHHHHTTTE---EEEEEEEECSSHHHHHHHHHHHHHHHSCHHHH---HHHHTTEEEEEECC-
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHcCC---CEEEEEECCCChHHHHHHHHHHHHHhcccccc---ccccCceEEEeCCCC
Confidence 346799999999999999999998876 89999999876443445554332211000000 012358999999999
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCC-------C
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPD-------Q 368 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~-------~ 368 (851)
+++ .+. ...++|+|||+||......++...+++||.||.+++++|.+ ++++|||+||+++ |. .
T Consensus 141 d~~------~l~-~~~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~--~~~~~v~~SS~~~-G~~~~~~~~~ 210 (427)
T 4f6c_A 141 CMD------DVV-LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVSTISV-GTYFDIDTED 210 (427)
T ss_dssp --C------CCC-CSSCCSEEEECCCCC-------CHHHHHHHHHHHHHHHHHH--TTCEEEEEEEGGG-GSEECSSCSC
T ss_pred Ccc------cCC-CcCCCCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHh--cCCcEEEECchHh-CCCccCCCCC
Confidence 954 222 66799999999999988888889999999999999999988 4799999999988 43 2
Q ss_pred cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCC
Q psy11859 369 KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-KLPVVIVRPSIVLPSFQEP 447 (851)
Q Consensus 369 ~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-~l~~~ivRp~~V~G~~~~p 447 (851)
.++.|+.+..+..+ .+.|+.||+++|.+++.+++ +++++|+|||+|||+...+
T Consensus 211 ~~~~E~~~~~~~~~--------------------------~~~Y~~sK~~~E~~~~~~~~~g~~~~ivRpg~v~G~~~~~ 264 (427)
T 4f6c_A 211 VTFSEADVYKGQLL--------------------------TSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYNGR 264 (427)
T ss_dssp CEECTTCSCSSCCC--------------------------CSHHHHHHHHHHHHHHHHHHTTCCEEEEEECCEESCSSSC
T ss_pred ccccccccccCCCC--------------------------CCchHHHHHHHHHHHHHHHHcCCCEEEEeCCeeecCCCCC
Confidence 35666665333333 46799999999999998864 9999999999999998764
Q ss_pred ----------chhHhhhhcCCceEEEEcc---------cCceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHHHH
Q psy11859 448 ----------VPGWVDSLNGPVGVLVASG---------KGVVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGKQL 507 (851)
Q Consensus 448 ----------~p~~i~~~~~~~~~~~~~g---------~~v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~~~ 507 (851)
++.++..+.....+..+.+ +|+++++..... ...+++||++++ .+++|.|+++.+.+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~DvA~ai~~~~~~~~~g~~~~l~~~--~~~s~~el~~~i~~~ 342 (427)
T 4f6c_A 265 WHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNTPQIIYHVLSP--NKMPVKSLLECVKRK 342 (427)
T ss_dssp CCCTTGGGCHHHHHHHHHHHSSEEEHHHHTCEECCEEHHHHHHHHHHHTTSCCCCSEEEESCS--CCEEHHHHHHHHHSS
T ss_pred ccccCcchHHHHHHHHHHHhcCCCCCccccceEEEeeHHHHHHHHHHHHcCCCCCCEEEecCC--CCCcHHHHHHHHHHc
Confidence 4556665444433333222 334444333322 237889999998 789999999999983
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-28 Score=267.72 Aligned_cols=241 Identities=25% Similarity=0.308 Sum_probs=183.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcc-cCCCeEEEEcCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPA-QLSRLHIIEGDI 294 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~-~~~~v~~v~gDi 294 (851)
+++|+|||||||||||++|+++|++.| .+|++++|...+. .+++..+ .++... ...+++++.+|+
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~--~~~~~~~---------~~~~~~~~~~~~~~~~~Dl 90 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLD---QKVVGLDNFATGH--QRNLDEV---------RSLVSEKQWSNFKFIQGDI 90 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCC--HHHHHHH---------HHHSCHHHHTTEEEEECCT
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCCccc--hhhHHHH---------hhhcccccCCceEEEECCC
Confidence 578999999999999999999999998 7899999976432 1222211 111100 024789999999
Q ss_pred CCCcCCCCHHHHHHHhcCccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--
Q psy11859 295 LQANLGIKDSDLLMLQEEVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK-- 369 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~-- 369 (851)
+|++ ++..+++++|+|||+||..... .++...+++|+.||.+|+++|.+.+ +++||++||+++++...
T Consensus 91 ~d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~v~~SS~~~~~~~~~~ 163 (352)
T 1sb8_A 91 RNLD------DCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAK-VQSFTYAASSSTYGDHPGL 163 (352)
T ss_dssp TSHH------HHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT-CSEEEEEEEGGGGTTCCCS
T ss_pred CCHH------HHHHHhcCCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeccHHhcCCCCCC
Confidence 9876 7888899999999999987653 4567889999999999999999885 89999999999887653
Q ss_pred ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC
Q psy11859 370 VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP 447 (851)
Q Consensus 370 ~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p 447 (851)
+++|+.++.|.++ |+.||+.+|.++..++. +++++++||++||||...+
T Consensus 164 ~~~E~~~~~~~~~-----------------------------Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~ 214 (352)
T 1sb8_A 164 PKVEDTIGKPLSP-----------------------------YAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDP 214 (352)
T ss_dssp SBCTTCCCCCCSH-----------------------------HHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCC
T ss_pred CCCCCCCCCCCCh-----------------------------hHHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCC
Confidence 6778776666555 99999999999988754 8999999999999998643
Q ss_pred -------chhHhhhhc-CCceEEEEccc---------CceeEEEeecCC---CCccEEEEeCCCCccccHHHHHHHHHHH
Q psy11859 448 -------VPGWVDSLN-GPVGVLVASGK---------GVVRSMILNDLS---TETQVFNISSNEVEAITWGEIISRGKQL 507 (851)
Q Consensus 448 -------~p~~i~~~~-~~~~~~~~~g~---------~v~~~~~~~~~~---~~~~iyni~~~~~~~~t~~el~~~~~~~ 507 (851)
++.|+..+. +....+.+.|. |+++++...... ..+++||++++ .++|+.|+++.+.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~ni~~~--~~~s~~e~~~~i~~~ 292 (352)
T 1sb8_A 215 NGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLDARNQVYNIAVG--GRTSLNQLFFALRDG 292 (352)
T ss_dssp CSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCGGGCSEEEEESCS--CCEEHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHCCCCcEEeCCCCceEeeEEHHHHHHHHHHHHhccccCCCceEEeCCC--CCccHHHHHHHHHHH
Confidence 455666643 33333344432 334333222222 35789999998 689999999999999
Q ss_pred h
Q psy11859 508 I 508 (851)
Q Consensus 508 ~ 508 (851)
+
T Consensus 293 ~ 293 (352)
T 1sb8_A 293 L 293 (352)
T ss_dssp H
T ss_pred H
Confidence 8
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=262.69 Aligned_cols=242 Identities=26% Similarity=0.307 Sum_probs=180.1
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++|+|||||||||||++|+++|++.|++ .+|++++|....... +.+ .+. ....+++++.+|++|
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~-~~V~~~~r~~~~~~~-~~~------------~~~--~~~~~~~~~~~Dl~d 65 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPD-WEVINIDKLGYGSNP-ANL------------KDL--EDDPRYTFVKGDVAD 65 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTT-CEEEEEECCCTTCCG-GGG------------TTT--TTCTTEEEEECCTTC
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCC-CEEEEEecCcccCch-hHH------------hhh--ccCCceEEEEcCCCC
Confidence 4689999999999999999999998743 589999986532111 011 000 012479999999998
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC--ccc
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ--KVL 371 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~--~~i 371 (851)
++ .+..++.++|+|||+||..... .++...+++|+.||.+|+++|.+.+..++|||+||.+++|.. .++
T Consensus 66 ~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~ 139 (336)
T 2hun_A 66 YE------LVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSF 139 (336)
T ss_dssp HH------HHHHHHHTCSEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCB
T ss_pred HH------HHHHHhhCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCc
Confidence 76 7888889999999999987643 345678999999999999999988534799999999888754 367
Q ss_pred ccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC--
Q psy11859 372 EEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP-- 447 (851)
Q Consensus 372 ~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p-- 447 (851)
+|+.+..|.++ |+.||+.+|.++..++. +++++++||++||||...+
T Consensus 140 ~E~~~~~~~~~-----------------------------Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~ 190 (336)
T 2hun_A 140 TENDRLMPSSP-----------------------------YSATKAASDMLVLGWTRTYNLNASITRCTNNYGPYQFPEK 190 (336)
T ss_dssp CTTBCCCCCSH-----------------------------HHHHHHHHHHHHHHHHHHTTCEEEEEEECEEESTTCCTTS
T ss_pred CCCCCCCCCCc-----------------------------cHHHHHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCcCc
Confidence 77766555555 99999999999988764 8999999999999998743
Q ss_pred -chhHhhhhcCCce-EEEEcccC---------ceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHHHHhhcC
Q psy11859 448 -VPGWVDSLNGPVG-VLVASGKG---------VVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 448 -~p~~i~~~~~~~~-~~~~~g~~---------v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
++.++..+..+.+ .+++.|.. +++++....+ ...+++||++++ .++|+.|+++.+.+.++..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~g~~~~v~~~--~~~s~~e~~~~i~~~~g~~ 264 (336)
T 2hun_A 191 LIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLLKGESREIYNISAG--EEKTNLEVVKIILRLMGKG 264 (336)
T ss_dssp HHHHHHHHHHTTCCEEEETC---CEEEEEHHHHHHHHHHHHHHCCTTCEEEECCS--CEECHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHcCCCceEeCCCCceeeeEEHHHHHHHHHHHHhCCCCCCEEEeCCC--CcccHHHHHHHHHHHhCCC
Confidence 5667766543333 33343332 2222221111 346789999998 6899999999999998863
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-28 Score=281.31 Aligned_cols=246 Identities=20% Similarity=0.167 Sum_probs=174.8
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC-
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ- 296 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~- 296 (851)
.|+|||||||||||++|+++|++.| .+|++++|........+++.+.+.......+ .+...++++++.||+++
T Consensus 150 ~~~VLVTGatG~iG~~l~~~L~~~g---~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~v~~v~~Dl~d~ 223 (508)
T 4f6l_B 150 LGNTLLTGATGFLGAYLIEALQGYS---HRIYCFIRADNEEIAWYKLMTNLNDYFSEET---VEMMLSNIEVIVGDFECM 223 (508)
T ss_dssp CEEEEESCTTSHHHHHHHHHTBTTE---EEEEEEEESSSHHHHHHHHHHHHHHHSCHHH---HHHHSTTEEEEEEBTTBC
T ss_pred CCeEEEECCccchHHHHHHHHHhcC---CEEEEEECCCChHHHHHHHHHHHHHhccccc---chhccCceEEEecCCccc
Confidence 5799999999999999999998776 8999999987654444555433221100000 01234689999999999
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC-------c
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ-------K 369 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~-------~ 369 (851)
+.++ +..++|+|||+||.+++..++...+++||.||.+|+++|.+ ++++|||+||+++ |.. .
T Consensus 224 ~~l~--------~~~~~D~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~--~~~~~v~iSS~~v-G~~~~~~~~~~ 292 (508)
T 4f6l_B 224 DDVV--------LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVSTISV-GTYFDIDTEDV 292 (508)
T ss_dssp SSCC--------CSSCCSEEEECCCC--------CCHHHHHHHHHHHHHHHHT--TTCEEEEEEESCT-TSEECTTCSCC
T ss_pred ccCC--------CccCCCEEEECCceecCCCCHHHHhhhHHHHHHHHHHHHHh--CCCcEEEeCChhh-ccCCccCCcCc
Confidence 5543 66899999999999988888888999999999999999988 4799999999988 431 2
Q ss_pred ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCC-
Q psy11859 370 VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-KLPVVIVRPSIVLPSFQEP- 447 (851)
Q Consensus 370 ~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-~l~~~ivRp~~V~G~~~~p- 447 (851)
++.|+.+..+..+ .+.|+.||+++|+++..+.. +++++|+||++|||+...+
T Consensus 293 ~~~E~~~~~~~~~--------------------------~~~Y~~sK~~~E~~~~~~~~~gi~~~ilRp~~v~G~~~~~~ 346 (508)
T 4f6l_B 293 TFSEADVYKGQLL--------------------------TSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYNGRW 346 (508)
T ss_dssp EECTTCSCSSBCC--------------------------CSHHHHHHHHHHHHHHHHHHTTCEEEEEEECCEESCSSSCC
T ss_pred ccccccccccccC--------------------------CCcHHHHHHHHHHHHHHHHHcCCCEEEEecceeccCCCCCc
Confidence 5666654332222 57799999999999998874 9999999999999998654
Q ss_pred ---------chhHhhhhcCCceEEEEccc---------CceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHHHHh
Q psy11859 448 ---------VPGWVDSLNGPVGVLVASGK---------GVVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGKQLI 508 (851)
Q Consensus 448 ---------~p~~i~~~~~~~~~~~~~g~---------~v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~~~~ 508 (851)
++.++..+.....+..+.|. |+++++..... ...+++||++++ .+++|.|+++.+.+..
T Consensus 347 ~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~v~v~DvA~ai~~~~~~~~~~~~~nl~~~--~~~s~~el~~~i~~~~ 424 (508)
T 4f6l_B 347 HMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNTPQIIYHVLSP--NKMPVKSLLECVKRKE 424 (508)
T ss_dssp CCTTCTTCHHHHHHHHHTTCSEEETTGGGSEEECEEHHHHHHHHHHHTTBCCSCSEEEESCS--CEEEHHHHHHHHHSSC
T ss_pred ccCCcchHHHHHHHHHHHHcCCCCCCccCceEEEEcHHHHHHHHHHHHhCCCCCCEEEeCCC--CCCCHHHHHHHHHHcC
Confidence 45566665444443333233 33333332222 237889999998 7899999999998864
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=261.49 Aligned_cols=233 Identities=16% Similarity=0.164 Sum_probs=177.1
Q ss_pred hhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 213 ARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 213 ~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
..+.+.++|||||||||||++|+++|++.| .+|++++|...... . +++++.+
T Consensus 7 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~G---~~V~~~~r~~~~~~------------------------l-~~~~~~~ 58 (321)
T 2pk3_A 7 HHHHGSMRALITGVAGFVGKYLANHLTEQN---VEVFGTSRNNEAKL------------------------P-NVEMISL 58 (321)
T ss_dssp ------CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCTTCCC------------------------T-TEEEEEC
T ss_pred ccccCcceEEEECCCChHHHHHHHHHHHCC---CEEEEEecCCcccc------------------------c-eeeEEEC
Confidence 345677899999999999999999999998 78999999764310 0 6789999
Q ss_pred CCCCCcCCCCHHHHHHHhcC--ccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCC
Q psy11859 293 DILQANLGIKDSDLLMLQEE--VSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPD 367 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~~~--vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~ 367 (851)
|++|++ ++..++++ +|+|||+||..... +++...+++|+.||.+|+++|.+++++++|||+||+++++.
T Consensus 59 Dl~d~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~ 132 (321)
T 2pk3_A 59 DIMDSQ------RVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGM 132 (321)
T ss_dssp CTTCHH------HHHHHHHHHCCSEEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBS
T ss_pred CCCCHH------HHHHHHHhcCCCEEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCC
Confidence 999876 77777765 99999999987653 35678999999999999999987745899999999988875
Q ss_pred C----cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEeccccc
Q psy11859 368 Q----KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVL 441 (851)
Q Consensus 368 ~----~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~ 441 (851)
. .+++|+.+..|.++ |+.||+.+|.++..++. +++++++||++||
T Consensus 133 ~~~~~~~~~E~~~~~~~~~-----------------------------Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~ 183 (321)
T 2pk3_A 133 ILPEESPVSEENQLRPMSP-----------------------------YGVSKASVGMLARQYVKAYGMDIIHTRTFNHI 183 (321)
T ss_dssp CCGGGCSBCTTSCCBCCSH-----------------------------HHHHHHHHHHHHHHHHHHHCCEEEEEEECEEE
T ss_pred CCCCCCCCCCCCCCCCCCc-----------------------------cHHHHHHHHHHHHHHHHHcCCCEEEEEeCccc
Confidence 3 36778776665555 99999999999988765 8999999999999
Q ss_pred CCCCCC---chhHhhhhc----C--CceEEEEcccCceeEEEe---------ecC-CCCccEEEEeCCCCccccHHHHHH
Q psy11859 442 PSFQEP---VPGWVDSLN----G--PVGVLVASGKGVVRSMIL---------NDL-STETQVFNISSNEVEAITWGEIIS 502 (851)
Q Consensus 442 G~~~~p---~p~~i~~~~----~--~~~~~~~~g~~v~~~~~~---------~~~-~~~~~iyni~~~~~~~~t~~el~~ 502 (851)
||...+ ++.++..+. | .....++.+......+.. ..+ ...+++||++++ .++|+.|+++
T Consensus 184 g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~g~~~~i~~~--~~~s~~e~~~ 261 (321)
T 2pk3_A 184 GPGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWLLSQYGKTGDVYNVCSG--IGTRIQDVLD 261 (321)
T ss_dssp CTTCCTTSHHHHHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHHHHHHHHHHHHHCCTTCEEEESCS--CEEEHHHHHH
T ss_pred CcCCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHHHHHHHHHHHhCCCCCCeEEeCCC--CCeeHHHHHH
Confidence 998754 555665543 3 223334433322222221 111 345789999988 6899999999
Q ss_pred HHHHHhhc
Q psy11859 503 RGKQLIYQ 510 (851)
Q Consensus 503 ~~~~~~~~ 510 (851)
.+.+.+|.
T Consensus 262 ~i~~~~g~ 269 (321)
T 2pk3_A 262 LLLAMANV 269 (321)
T ss_dssp HHHHHSSS
T ss_pred HHHHHhCC
Confidence 99999875
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=261.07 Aligned_cols=239 Identities=25% Similarity=0.290 Sum_probs=179.8
Q ss_pred CEEEEecCccHHHHHHHHHHHHh-CCCc--cEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRS-CPDI--GKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~-g~~v--~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
|+|||||||||||++|+++|++. ++++ .+|++++|....... +.+. .+. ...+++++.+|++
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~-~~~~---------~~~-----~~~~~~~~~~Dl~ 65 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR-ANLA---------PVD-----ADPRLRFVHGDIR 65 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG-GGGG---------GGT-----TCTTEEEEECCTT
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCch-hhhh---------hcc-----cCCCeEEEEcCCC
Confidence 58999999999999999999995 4432 589999986532111 1110 000 1247899999999
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC--cc
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ--KV 370 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~--~~ 370 (851)
|++ ++..++.++|+|||+||..... .++...+++|+.||.+++++|.+.+ +++|||+||.++++.. .+
T Consensus 66 d~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~-~~~~v~~SS~~vyg~~~~~~ 138 (337)
T 1r6d_A 66 DAG------LLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG-VGRVVHVSTNQVYGSIDSGS 138 (337)
T ss_dssp CHH------HHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTT-CCEEEEEEEGGGGCCCSSSC
T ss_pred CHH------HHHHHhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEecchHHhCCCCCCC
Confidence 886 7888889999999999987653 3456789999999999999999885 8999999999888754 36
Q ss_pred cccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC-
Q psy11859 371 LEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP- 447 (851)
Q Consensus 371 i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p- 447 (851)
++|+.+..|.++ |+.||+.+|.++..+.. +++++++||++||||...+
T Consensus 139 ~~E~~~~~~~~~-----------------------------Y~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~~ 189 (337)
T 1r6d_A 139 WTESSPLEPNSP-----------------------------YAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPE 189 (337)
T ss_dssp BCTTSCCCCCSH-----------------------------HHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTT
T ss_pred CCCCCCCCCCCc-----------------------------hHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCCC
Confidence 777765555555 99999999999988764 8999999999999998753
Q ss_pred --chhHhhhhcCCce-EEEEcccCceeEEEee---------cC-CCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 448 --VPGWVDSLNGPVG-VLVASGKGVVRSMILN---------DL-STETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 448 --~p~~i~~~~~~~~-~~~~~g~~v~~~~~~~---------~~-~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
++.++..+..+.+ .+++.|......+... .+ ...+++||++++ .++|+.|+++.+.+.+|.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~g~~~~v~~~--~~~s~~e~~~~i~~~~g~ 263 (337)
T 1r6d_A 190 KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGRAGEIYHIGGG--LELTNRELTGILLDSLGA 263 (337)
T ss_dssp SHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCCTTCEEEECCC--CEEEHHHHHHHHHHHHTC
T ss_pred ChHHHHHHHHhcCCCcEEeCCCCeeEeeEeHHHHHHHHHHHHhCCCCCCEEEeCCC--CCccHHHHHHHHHHHhCC
Confidence 5667766443333 3334333222222211 11 345789999998 689999999999999885
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-28 Score=267.22 Aligned_cols=305 Identities=18% Similarity=0.189 Sum_probs=215.9
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
+.+++|+|||||||||||++|+++|++.| .+|++++|........ ...+. ...+++++.+|
T Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~-----------~~~~~-----~~~~~~~~~~D 65 (357)
T 1rkx_A 5 SFWQGKRVFVTGHTGFKGGWLSLWLQTMG---ATVKGYSLTAPTVPSL-----------FETAR-----VADGMQSEIGD 65 (357)
T ss_dssp HHHTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCSSSSCH-----------HHHTT-----TTTTSEEEECC
T ss_pred hhhCCCEEEEECCCchHHHHHHHHHHhCC---CeEEEEeCCCcccchh-----------hHhhc-----cCCceEEEEcc
Confidence 45678999999999999999999999998 7899999976543211 01010 12478999999
Q ss_pred CCCCcCCCCHHHHHHHhcC--ccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC
Q psy11859 294 ILQANLGIKDSDLLMLQEE--VSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ 368 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~~--vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~ 368 (851)
+++++ ++..++++ +|+|||+||..... ..+...+++|+.||.+|+++|.+++.+++|||+||+++|+..
T Consensus 66 l~d~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~ 139 (357)
T 1rkx_A 66 IRDQN------KLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNK 139 (357)
T ss_dssp TTCHH------HHHHHHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCC
T ss_pred ccCHH------HHHHHHHhcCCCEEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCC
Confidence 99876 77777775 89999999975432 356688999999999999999988558999999999988865
Q ss_pred c---ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh-----------CCCCEEE
Q psy11859 369 K---VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK-----------TKLPVVI 434 (851)
Q Consensus 369 ~---~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~-----------~~l~~~i 434 (851)
. ++.|+.+..|.++ |+.||+.+|+++..++ .++++++
T Consensus 140 ~~~~~~~E~~~~~~~~~-----------------------------Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~ 190 (357)
T 1rkx_A 140 EWIWGYRENEAMGGYDP-----------------------------YSNSKGCAELVTSSYRNSFFNPANYGQHGTAVAT 190 (357)
T ss_dssp CSSSCBCTTSCBCCSSH-----------------------------HHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEE
T ss_pred CcCCCCCCCCCCCCCCc-----------------------------cHHHHHHHHHHHHHHHHHHhhhhccccCCceEEE
Confidence 3 5666655555544 9999999999998764 2899999
Q ss_pred EecccccCCCCC----CchhHhhhhcCCceEEEEccc---------CceeEEEeecC------CCCccEEEEeCCCCccc
Q psy11859 435 VRPSIVLPSFQE----PVPGWVDSLNGPVGVLVASGK---------GVVRSMILNDL------STETQVFNISSNEVEAI 495 (851)
Q Consensus 435 vRp~~V~G~~~~----p~p~~i~~~~~~~~~~~~~g~---------~v~~~~~~~~~------~~~~~iyni~~~~~~~~ 495 (851)
+||++||||++. .++.++..+..+.++.++.+. |+++++....+ ...+++||++++...++
T Consensus 191 lrp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~~~~~~~~~ni~~~~~~~~ 270 (357)
T 1rkx_A 191 VRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADAT 270 (357)
T ss_dssp EECCCEECTTCCCSSCHHHHHHHHHHTTCCEECSCTTCEECCEETHHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCE
T ss_pred EeeceeeCCCCCccccHHHHHHHHHhcCCCEEECCCCCeeccEeHHHHHHHHHHHHHhhhhcCCCCCceEEECCCCCCcc
Confidence 999999999863 366777775555555444332 22222221111 13568999998533689
Q ss_pred cHHHHHHHHHHHhhcCCCCCccccCcceeccchHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhccc
Q psy11859 496 TWGEIISRGKQLIYQYPLEAGLWYPNGQIRSNRFWHYFFVIFTQILPAYLVDFIMVLIRQKTFLVRVQNRIWLGMHLLEY 575 (851)
Q Consensus 496 t~~el~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~lpa~~~d~~~~l~G~~p~l~~~~~ki~~~~~~~~~ 575 (851)
|+.|+++.+.+.+|..+. +..+ | .+. +
T Consensus 271 s~~e~~~~i~~~~g~~~~---~~~~---------------------~-------------~~~----------------~ 297 (357)
T 1rkx_A 271 PVKNIVEQMVKYWGEGAS---WQLD---------------------G-------------NAH----------------P 297 (357)
T ss_dssp EHHHHHHHHHHHHCTTCC---EEC--------------------------------------------------------
T ss_pred cHHHHHHHHHHHhCCCCc---cccC---------------------C-------------CCC----------------C
Confidence 999999999999875321 1111 0 000 0
Q ss_pred cccCeEEEcChhHHHHHHhcCccCCCccccccccCCHHHHHHHHHHHHHHhhhCCCCCChHH
Q psy11859 576 FTTRNWDFKNKRLLALHDNISEKDKQTFYIANIDVNIDDYLKTIILGARQYCLKEPLTTLPK 637 (851)
Q Consensus 576 f~~~~w~f~~~n~~~l~~~l~~~d~~~F~~d~~~i~W~~Y~~~~~~GirkyllKe~~~~l~~ 637 (851)
.....+.++++++++.+. +.+ ..+|++-+..++.-.+++.-+.++.++++
T Consensus 298 ~~~~~~~~d~~k~~~~lG-----------~~p-~~~l~e~l~~~~~~~~~~~~~~~~~~~~~ 347 (357)
T 1rkx_A 298 HEAHYLKLDCSKAKMQLG-----------WHP-RWNLNTTLEYIVGWHKNWLSGTDMHEYSI 347 (357)
T ss_dssp -CCCCCCBCCHHHHHHHC-----------CCC-CCCHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cCcccccCCHHHHHHHhC-----------CCc-CCcHHHHHHHHHHHHHHHhcCCccceeeh
Confidence 112346688888877542 222 24889999888888888776666555554
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-28 Score=265.83 Aligned_cols=239 Identities=17% Similarity=0.165 Sum_probs=179.6
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHH-HHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPK-ARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~-~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
.+|+|||||||||||++|+++|++.| .+|++++|........ +++... ...++.++.+|++
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~---------------~~~~~~~~~~Dl~ 65 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHG---YDVVIADNLVNSKREAIARIEKI---------------TGKTPAFHETDVS 65 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTT---CEEEEECCCSSSCTHHHHHHHHH---------------HSCCCEEECCCTT
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCC---CcEEEEecCCcchHHHHHHHHhh---------------cCCCceEEEeecC
Confidence 46899999999999999999999998 7899999976554221 122111 1247889999999
Q ss_pred CCcCCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc-
Q psy11859 296 QANLGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK- 369 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~- 369 (851)
|++ ++..+++ ++|+|||+||..... ..+.+.+++|+.||.+++++|++.+ +++||++||+.+++...
T Consensus 66 d~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~iv~~SS~~~~g~~~~ 138 (341)
T 3enk_A 66 DER------ALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERA-VKRIVFSSSATVYGVPER 138 (341)
T ss_dssp CHH------HHHHHHHHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGBCSCSS
T ss_pred CHH------HHHHHHhccCCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCC-CCEEEEEecceEecCCCC
Confidence 886 7888887 899999999987654 3455789999999999999999885 89999999988887543
Q ss_pred -ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC---CCCEEEEecccccCCCC
Q psy11859 370 -VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT---KLPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 370 -~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~---~l~~~ivRp~~V~G~~~ 445 (851)
+++|+.+..|.++ |+.||+++|.++..++. +++++++||++||||..
T Consensus 139 ~~~~e~~~~~~~~~-----------------------------Y~~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~ 189 (341)
T 3enk_A 139 SPIDETFPLSATNP-----------------------------YGQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAHE 189 (341)
T ss_dssp SSBCTTSCCBCSSH-----------------------------HHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCT
T ss_pred CCCCCCCCCCCCCh-----------------------------hHHHHHHHHHHHHHHhhcCCCceEEEEeeccccCCcc
Confidence 6788776666655 99999999999988754 59999999999999964
Q ss_pred CC-------------chhHhhhhcCC-ceE-EEE------ccc---------CceeEEEeecC----CCCccEEEEeCCC
Q psy11859 446 EP-------------VPGWVDSLNGP-VGV-LVA------SGK---------GVVRSMILNDL----STETQVFNISSNE 491 (851)
Q Consensus 446 ~p-------------~p~~i~~~~~~-~~~-~~~------~g~---------~v~~~~~~~~~----~~~~~iyni~~~~ 491 (851)
.. +|.+.....+. .++ +++ .|. |+++++....+ ...+++||++++
T Consensus 190 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~- 268 (341)
T 3enk_A 190 SGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYIHVVDLARGHIAALDALERRDASLTVNLGTG- 268 (341)
T ss_dssp TSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHHHTSCEEEEESCS-
T ss_pred ccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCCCCCeeEeeEEHHHHHHHHHHHHHhhhcCCcceEEEeCCC-
Confidence 21 33333334333 222 233 232 23332222211 246889999998
Q ss_pred CccccHHHHHHHHHHHhhcC
Q psy11859 492 VEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 492 ~~~~t~~el~~~~~~~~~~~ 511 (851)
.++|+.|+++.+.+.+|..
T Consensus 269 -~~~s~~e~~~~i~~~~g~~ 287 (341)
T 3enk_A 269 -RGYSVLEVVRAFEKASGRA 287 (341)
T ss_dssp -CCEEHHHHHHHHHHHHCSC
T ss_pred -CceeHHHHHHHHHHHhCCC
Confidence 7899999999999998863
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=259.80 Aligned_cols=230 Identities=22% Similarity=0.264 Sum_probs=175.6
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|++.| ..|.+..|..... .....++.++.+|+++ +
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g---~~v~~~~~~~~~~----------------------~~~~~~~~~~~~Dl~~-~ 55 (313)
T 3ehe_A 2 SLIVVTGGAGFIGSHVVDKLSESN---EIVVIDNLSSGNE----------------------EFVNEAARLVKADLAA-D 55 (313)
T ss_dssp -CEEEETTTSHHHHHHHHHHTTTS---CEEEECCCSSCCG----------------------GGSCTTEEEECCCTTT-S
T ss_pred CEEEEECCCchHHHHHHHHHHhCC---CEEEEEcCCCCCh----------------------hhcCCCcEEEECcCCh-H
Confidence 589999999999999999999987 3344433333221 0113478999999998 5
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCc---chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--cccc
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKL---EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--VLEE 373 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~---~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~i~E 373 (851)
++..+++++|+|||+||.... .+.+...+++|+.||.+++++|++.+ +++|||+||+.+|+... +++|
T Consensus 56 ------~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-~~~iv~~SS~~vyg~~~~~~~~E 128 (313)
T 3ehe_A 56 ------DIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAG-VSRIVFTSTSTVYGEAKVIPTPE 128 (313)
T ss_dssp ------CCHHHHTTCSEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGGCSCSSSSBCT
T ss_pred ------HHHHHhcCCCEEEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEeCchHHhCcCCCCCCCC
Confidence 567778899999999997543 25678899999999999999999885 89999999998887543 6777
Q ss_pred ccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC--ch
Q psy11859 374 KLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP--VP 449 (851)
Q Consensus 374 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p--~p 449 (851)
+.+..|.++ |+.||+.+|.++..++. +++++|+||++||||++.+ ++
T Consensus 129 ~~~~~~~~~-----------------------------Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~ 179 (313)
T 3ehe_A 129 DYPTHPISL-----------------------------YGASKLACEALIESYCHTFDMQAWIYRFANVIGRRSTHGVIY 179 (313)
T ss_dssp TSCCCCCSH-----------------------------HHHHHHHHHHHHHHHHHHTTCEEEEEECSCEESTTCCCSHHH
T ss_pred CCCCCCCCH-----------------------------HHHHHHHHHHHHHHHHHhcCCCEEEEeeccccCcCCCcChHH
Confidence 776666655 99999999999998765 9999999999999998764 55
Q ss_pred hHhhhh-cCCceE-EEEccc---------CceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHHHHhhcCC
Q psy11859 450 GWVDSL-NGPVGV-LVASGK---------GVVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGKQLIYQYP 512 (851)
Q Consensus 450 ~~i~~~-~~~~~~-~~~~g~---------~v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~p 512 (851)
.++..+ .++.++ +++.|. |+++++....+ ...+++||++++ .++|+.|+++.+.+.+|..|
T Consensus 180 ~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~ni~~~--~~~s~~e~~~~i~~~~g~~~ 252 (313)
T 3ehe_A 180 DFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGDERVNIFNIGSE--DQIKVKRIAEIVCEELGLSP 252 (313)
T ss_dssp HHHHHHHHCTTEEEESTTSCCEECCEEHHHHHHHHHHHTTCCSSEEEEECCCS--CCEEHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHcCCCceEEeCCCCeEEeEEEHHHHHHHHHHHhccCCCCceEEECCC--CCeeHHHHHHHHHHHhCCCC
Confidence 666653 343443 333332 34444333333 446789999998 78999999999999988643
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=257.40 Aligned_cols=230 Identities=19% Similarity=0.196 Sum_probs=176.4
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|++.| .+|++++|....... ....+++++.+|++|++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~---------------------~~~~~~~~~~~Dl~d~~ 56 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELG---YEVVVVDNLSSGRRE---------------------FVNPSAELHVRDLKDYS 56 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEECCCSSCCGG---------------------GSCTTSEEECCCTTSTT
T ss_pred CEEEEECCCChHHHHHHHHHHhCC---CEEEEEeCCCCCchh---------------------hcCCCceEEECccccHH
Confidence 689999999999999999999998 789999987654210 01247889999999875
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCc---chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--cccc
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKL---EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--VLEE 373 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~---~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~i~E 373 (851)
+..++++ |+|||+||.... ...+...+++|+.||.+++++|++.+ +++|||+||+++|+... +++|
T Consensus 57 -------~~~~~~~-d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~iv~~SS~~vyg~~~~~~~~e 127 (312)
T 3ko8_A 57 -------WGAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTG-VRTVVFASSSTVYGDADVIPTPE 127 (312)
T ss_dssp -------TTTTCCC-SEEEECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEEEGGGGCSCSSSSBCT
T ss_pred -------HHhhcCC-CEEEECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeCcHHHhCCCCCCCCCC
Confidence 3344555 999999996543 24567889999999999999999885 89999999998887654 6788
Q ss_pred ccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC--ch
Q psy11859 374 KLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP--VP 449 (851)
Q Consensus 374 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p--~p 449 (851)
+.+..|.++ |+.||+.+|.++..++. +++++++||++||||...+ ++
T Consensus 128 ~~~~~p~~~-----------------------------Y~~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~g~~~~~~~~~ 178 (312)
T 3ko8_A 128 EEPYKPISV-----------------------------YGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPRLRHGVIY 178 (312)
T ss_dssp TSCCCCCSH-----------------------------HHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCSSHHH
T ss_pred CCCCCCCCh-----------------------------HHHHHHHHHHHHHHHHHHhCCCEEEEeeccccCcCCCCChHH
Confidence 776666666 99999999999988765 9999999999999998654 55
Q ss_pred hHhhhh-cCCceE-EEEccc---------CceeEEEeecC-----CCCccEEEEeCCCCccccHHHHHHHHHHHhhcCC
Q psy11859 450 GWVDSL-NGPVGV-LVASGK---------GVVRSMILNDL-----STETQVFNISSNEVEAITWGEIISRGKQLIYQYP 512 (851)
Q Consensus 450 ~~i~~~-~~~~~~-~~~~g~---------~v~~~~~~~~~-----~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~p 512 (851)
.++..+ .+...+ .++.|. |+++++....+ ...+++||++++ .++|+.|+++.+.+.+|..|
T Consensus 179 ~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~ni~~~--~~~s~~e~~~~i~~~~g~~~ 255 (312)
T 3ko8_A 179 DFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVGNV--DAVRVLDIAQIVAEVLGLRP 255 (312)
T ss_dssp HHHHHHHHCTTEEEEC----CEECEEEHHHHHHHHHHHHHHHHHSCCSEEEEEESCS--SCEEHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHHHHhccccCCCCcEEEEcCC--CceeHHHHHHHHHHHhCCCC
Confidence 666664 333333 334332 33333322221 246789999998 68999999999999998654
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-28 Score=263.48 Aligned_cols=225 Identities=16% Similarity=0.214 Sum_probs=169.0
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
++++|+|||||||||||++|+++|++.|. +... ....++++.+|+
T Consensus 3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~---------~~~~--------------------------~~~~~~~~~~D~ 47 (319)
T 4b8w_A 3 YFQSMRILVTGGSGLVGKAIQKVVADGAG---------LPGE--------------------------DWVFVSSKDADL 47 (319)
T ss_dssp CCCCCEEEEETCSSHHHHHHHHHHHTTTC---------CTTC--------------------------EEEECCTTTCCT
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhcCC---------cccc--------------------------cccccCceeccc
Confidence 35789999999999999999999999873 1100 011344568999
Q ss_pred CCCcCCCCHHHHHHHhcC--ccEEEEccccCCc----chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC
Q psy11859 295 LQANLGIKDSDLLMLQEE--VSVVFNGAASLKL----EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ 368 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~~--vd~ViH~AA~~~~----~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~ 368 (851)
+|++ .+..++++ +|+|||+||.... ..++.+.+++|+.||.+|+++|++.+ +++|||+||+++|+..
T Consensus 48 ~d~~------~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~-~~~~v~~SS~~vyg~~ 120 (319)
T 4b8w_A 48 TDTA------QTRALFEKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVG-ARKVVSCLSTCIFPDK 120 (319)
T ss_dssp TSHH------HHHHHHHHSCCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTT-CSEEEEECCGGGSCSS
T ss_pred CCHH------HHHHHHhhcCCCEEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEcchhhcCCC
Confidence 9876 78888776 9999999998753 24567889999999999999999986 8999999999888764
Q ss_pred c--cccccc----CCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccc
Q psy11859 369 K--VLEEKL----YPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIV 440 (851)
Q Consensus 369 ~--~i~E~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V 440 (851)
. +++|+. ++.|.+ .+|+.||+++|+++..+.. +++++|+||++|
T Consensus 121 ~~~~~~E~~~~~~~~~p~~----------------------------~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v 172 (319)
T 4b8w_A 121 TTYPIDETMIHNGPPHNSN----------------------------FGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNV 172 (319)
T ss_dssp CCSSBCGGGGGBSCCCSSS----------------------------HHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEE
T ss_pred CCCCccccccccCCCCCCc----------------------------chHHHHHHHHHHHHHHHHHhhCCCEEEEeeccc
Confidence 3 677775 222222 2499999999999988764 999999999999
Q ss_pred cCCCCCC-------chhHhhh----hc-CCceEEEEcccCc---------eeEEEeecC---CCCccEEEEeCCCCcccc
Q psy11859 441 LPSFQEP-------VPGWVDS----LN-GPVGVLVASGKGV---------VRSMILNDL---STETQVFNISSNEVEAIT 496 (851)
Q Consensus 441 ~G~~~~p-------~p~~i~~----~~-~~~~~~~~~g~~v---------~~~~~~~~~---~~~~~iyni~~~~~~~~t 496 (851)
|||+..+ +|.|+.. +. +....+.+.|... ++++....+ ...+++||++++ .++|
T Consensus 173 ~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~ni~~~--~~~s 250 (319)
T 4b8w_A 173 FGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLFIWVLREYNEVEPIILSVGEE--DEVS 250 (319)
T ss_dssp ECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCEEEESCSCCEECEEEHHHHHHHHHHHHHHCCCSSCEEECCCGG--GCEE
T ss_pred cCCCCCCCCccccccHHHHHHHHHHhccCCceEEeCCCCeeEEEEeHHHHHHHHHHHHhccccCCceEEEecCC--Ccee
Confidence 9998753 5667766 33 3333344544322 222221111 234679999998 7899
Q ss_pred HHHHHHHHHHHhhcC
Q psy11859 497 WGEIISRGKQLIYQY 511 (851)
Q Consensus 497 ~~el~~~~~~~~~~~ 511 (851)
+.|+++.+.+.+|..
T Consensus 251 ~~e~~~~i~~~~g~~ 265 (319)
T 4b8w_A 251 IKEAAEAVVEAMDFH 265 (319)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999998853
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-27 Score=258.55 Aligned_cols=238 Identities=19% Similarity=0.121 Sum_probs=179.1
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
.+|+|||||||||||++|+++|++.| .+|++++|...... ..++..+. ...+++++.+|++|
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~-~~~~~~~~--------------~~~~~~~~~~Dl~d 74 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKG---YRVHGLVARRSSDT-RWRLRELG--------------IEGDIQYEDGDMAD 74 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCCSSCC-CHHHHHTT--------------CGGGEEEEECCTTC
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCC---CeEEEEeCCCcccc-ccchhhcc--------------ccCceEEEECCCCC
Confidence 56899999999999999999999998 78999999765421 12221110 12378899999998
Q ss_pred CcCCCCHHHHHHHhcC--ccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCc-eEEEEeeeeeeeCCCc-
Q psy11859 297 ANLGIKDSDLLMLQEE--VSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKL-VAFIHFSTAFCHPDQK- 369 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~--vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~-~~fV~vSTa~~~~~~~- 369 (851)
++ ++..++++ +|+|||+||..... .++...+++|+.||.+|+++|.+.+ + ++||++||+++++...
T Consensus 75 ~~------~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~~v~~SS~~v~g~~~~ 147 (335)
T 1rpn_A 75 AC------SVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFS-PETRFYQASTSEMFGLIQA 147 (335)
T ss_dssp HH------HHHHHHHHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHC-TTSEEEEEEEGGGGCSCSS
T ss_pred HH------HHHHHHHHcCCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEeCHHHhCCCCC
Confidence 76 77777764 79999999987653 4567889999999999999999885 5 8999999998887643
Q ss_pred -ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCC
Q psy11859 370 -VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 370 -~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~ 446 (851)
+++|+.+..|.++ |+.||+.+|.++..++. +++++++||++||||+..
T Consensus 148 ~~~~E~~~~~p~~~-----------------------------Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~ 198 (335)
T 1rpn_A 148 ERQDENTPFYPRSP-----------------------------YGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRG 198 (335)
T ss_dssp SSBCTTSCCCCCSH-----------------------------HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSC
T ss_pred CCCCcccCCCCCCh-----------------------------hHHHHHHHHHHHHHHHHHcCCcEEEEeeCcccCCCCC
Confidence 6778776666655 99999999999988765 899999999999999764
Q ss_pred C------chhHhhhh-cCCce-EEEEcccC---------ceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHHHHhh
Q psy11859 447 P------VPGWVDSL-NGPVG-VLVASGKG---------VVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQLIY 509 (851)
Q Consensus 447 p------~p~~i~~~-~~~~~-~~~~~g~~---------v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~~~~ 509 (851)
+ ++.++..+ .+..+ +.++.|.. +++++....+...+++||++++ .++|+.|+++.+.+.+|
T Consensus 199 ~~~~~~~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~ni~~~--~~~s~~e~~~~i~~~~g 276 (335)
T 1rpn_A 199 IEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDKADDYVVATG--VTTTVRDMCQIAFEHVG 276 (335)
T ss_dssp TTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHHSSSCCCEEECCS--CEEEHHHHHHHHHHTTT
T ss_pred CCcchHHHHHHHHHHHcCCCceEEeCCCcceeceEEHHHHHHHHHHHHhcCCCCEEEEeCC--CCccHHHHHHHHHHHhC
Confidence 3 34455443 34323 33444432 3333222222334589999998 68999999999999987
Q ss_pred c
Q psy11859 510 Q 510 (851)
Q Consensus 510 ~ 510 (851)
.
T Consensus 277 ~ 277 (335)
T 1rpn_A 277 L 277 (335)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-27 Score=259.95 Aligned_cols=237 Identities=21% Similarity=0.243 Sum_probs=177.6
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|++.+++ .+|++++|....... +.+ ... ..++++++.+|++|++
T Consensus 5 ~~vlVTGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~-~~~------------~~~---~~~~~~~~~~Dl~d~~ 67 (348)
T 1oc2_A 5 KNIIVTGGAGFIGSNFVHYVYNNHPD-VHVTVLDKLTYAGNK-ANL------------EAI---LGDRVELVVGDIADAE 67 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTT-CEEEEEECCCTTCCG-GGT------------GGG---CSSSEEEEECCTTCHH
T ss_pred cEEEEeCCccHHHHHHHHHHHHhCCC-CEEEEEeCCCCCCCh-hHH------------hhh---ccCCeEEEECCCCCHH
Confidence 68999999999999999999998322 689999997532111 000 000 1247999999999876
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC-------
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ------- 368 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~------- 368 (851)
++..+++++|+|||+||..... .++...+++|+.||.+++++|.+.+ + +|||+||+.+++..
T Consensus 68 ------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~-~-~~v~~SS~~vyg~~~~~~~~~ 139 (348)
T 1oc2_A 68 ------LVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYD-I-RFHHVSTDEVYGDLPLREDLP 139 (348)
T ss_dssp ------HHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHT-C-EEEEEEEGGGGCCBCCGGGST
T ss_pred ------HHHHHhhcCCEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhC-C-eEEEecccceeCCCccccccc
Confidence 8888999999999999987653 3456789999999999999999886 6 99999999888754
Q ss_pred -------cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEeccc
Q psy11859 369 -------KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSI 439 (851)
Q Consensus 369 -------~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~ 439 (851)
.+++|+.+..|.+ .|+.||+.+|.++..++. +++++++||++
T Consensus 140 ~~~~~~~~~~~E~~~~~~~~-----------------------------~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~ 190 (348)
T 1oc2_A 140 GHGEGPGEKFTAETNYNPSS-----------------------------PYSSTKAASDLIVKAWVRSFGVKATISNCSN 190 (348)
T ss_dssp TTTCSTTSSBCTTSCCCCCS-----------------------------HHHHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred ccccccCCCcCCCCCCCCCC-----------------------------ccHHHHHHHHHHHHHHHHHhCCCEEEEeece
Confidence 3455655444444 499999999999988764 89999999999
Q ss_pred ccCCCCCC---chhHhhhh-cCCceEEEEcccC---------ceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHH
Q psy11859 440 VLPSFQEP---VPGWVDSL-NGPVGVLVASGKG---------VVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGK 505 (851)
Q Consensus 440 V~G~~~~p---~p~~i~~~-~~~~~~~~~~g~~---------v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~ 505 (851)
||||...+ ++.++..+ .+....+.+.+.. +++++....+ ...+++||++++ .++|+.|+++.+.
T Consensus 191 v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~g~~~~i~~~--~~~s~~e~~~~i~ 268 (348)
T 1oc2_A 191 NYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGRMGETYLIGAD--GEKNNKEVLELIL 268 (348)
T ss_dssp EESTTCCTTSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHHHHHHHHHHHCCTTCEEEECCS--CEEEHHHHHHHHH
T ss_pred eeCCCCCccchHHHHHHHHHcCCCceEecCCCceEeeEEHHHHHHHHHHHhhCCCCCCeEEeCCC--CCCCHHHHHHHHH
Confidence 99998753 56666664 3433333343332 2222221111 345789999998 6899999999999
Q ss_pred HHhhcC
Q psy11859 506 QLIYQY 511 (851)
Q Consensus 506 ~~~~~~ 511 (851)
+.++..
T Consensus 269 ~~~g~~ 274 (348)
T 1oc2_A 269 EKMGQP 274 (348)
T ss_dssp HHTTCC
T ss_pred HHhCCC
Confidence 998863
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=264.23 Aligned_cols=233 Identities=18% Similarity=0.136 Sum_probs=179.2
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++|+|||||||||||++|+++|++.| .+|++++|....... ....+++++.+|++|
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~---------------------~~~~~v~~~~~Dl~d 83 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEG---HYVIASDWKKNEHMT---------------------EDMFCDEFHLVDLRV 83 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCCSSSC---------------------GGGTCSEEEECCTTS
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCC---CeEEEEECCCccchh---------------------hccCCceEEECCCCC
Confidence 46899999999999999999999998 789999997654210 011378899999998
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCc----chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC----
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKL----EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ---- 368 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~----~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~---- 368 (851)
++ ++..+++++|+|||+||.... ..++.+.+++|+.||.+|+++|++.+ +++|||+||+.+++..
T Consensus 84 ~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~-~~~~V~~SS~~v~~~~~~~~ 156 (379)
T 2c5a_A 84 ME------NCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARING-IKRFFYASSACIYPEFKQLE 156 (379)
T ss_dssp HH------HHHHHHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTT-CSEEEEEEEGGGSCGGGSSS
T ss_pred HH------HHHHHhCCCCEEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEeehheeCCCCCCC
Confidence 76 888888999999999998754 35677899999999999999999875 8999999999888753
Q ss_pred ---ccccccc--CCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEeccccc
Q psy11859 369 ---KVLEEKL--YPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVL 441 (851)
Q Consensus 369 ---~~i~E~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~ 441 (851)
.+++|+. +..|. +.|+.||+.+|.++..++. +++++++||++||
T Consensus 157 ~~~~~~~E~~~~~~~~~-----------------------------~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~ 207 (379)
T 2c5a_A 157 TTNVSLKESDAWPAEPQ-----------------------------DAFGLEKLATEELCKHYNKDFGIECRIGRFHNIY 207 (379)
T ss_dssp SSSCEECGGGGSSBCCS-----------------------------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEE
T ss_pred ccCCCcCcccCCCCCCC-----------------------------ChhHHHHHHHHHHHHHHHHHHCCCEEEEEeCcee
Confidence 2355654 22333 4599999999999988754 8999999999999
Q ss_pred CCCCCC-------chhHhhhh-cCCc-eEEEEccc---------CceeEEEeecCCCCccEEEEeCCCCccccHHHHHHH
Q psy11859 442 PSFQEP-------VPGWVDSL-NGPV-GVLVASGK---------GVVRSMILNDLSTETQVFNISSNEVEAITWGEIISR 503 (851)
Q Consensus 442 G~~~~p-------~p~~i~~~-~~~~-~~~~~~g~---------~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~ 503 (851)
||...+ ++.++..+ .+.. ..+++.|. |+++++....+...+++||++++ .++|+.|+++.
T Consensus 208 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~~~~ni~~~--~~~s~~e~~~~ 285 (379)
T 2c5a_A 208 GPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSD--EMVSMNEMAEM 285 (379)
T ss_dssp CTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHHSSCCSCEEECCC--CCEEHHHHHHH
T ss_pred CcCCCcccccccHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHHHHHHHHHHHhhccCCCeEEeCCC--CccCHHHHHHH
Confidence 998653 45666664 3433 23344432 23333322222335789999998 68999999999
Q ss_pred HHHHhhcC
Q psy11859 504 GKQLIYQY 511 (851)
Q Consensus 504 ~~~~~~~~ 511 (851)
+.+.++..
T Consensus 286 i~~~~g~~ 293 (379)
T 2c5a_A 286 VLSFEEKK 293 (379)
T ss_dssp HHHTTTCC
T ss_pred HHHHhCCC
Confidence 99998853
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.8e-27 Score=255.32 Aligned_cols=230 Identities=20% Similarity=0.270 Sum_probs=174.4
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|++.| .+|++++|...... + ....+++++.+|+++++
T Consensus 2 ~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~--------------~-------~~~~~~~~~~~D~~~~~ 57 (330)
T 2c20_A 2 NSILICGGAGYIGSHAVKKLVDEG---LSVVVVDNLQTGHE--------------D-------AITEGAKFYNGDLRDKA 57 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCG--------------G-------GSCTTSEEEECCTTCHH
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC---CEEEEEeCCCcCch--------------h-------hcCCCcEEEECCCCCHH
Confidence 689999999999999999999998 78999998754421 0 01127889999999876
Q ss_pred CCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC--ccc
Q psy11859 299 LGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ--KVL 371 (851)
Q Consensus 299 lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~--~~i 371 (851)
.+..+++ ++|+|||+||..... .++...+++|+.||.+|+++|++.+ +++|||+||+++++.. .++
T Consensus 58 ------~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~v~~Ss~~~~~~~~~~~~ 130 (330)
T 2c20_A 58 ------FLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFK-VDKFIFSSTAATYGEVDVDLI 130 (330)
T ss_dssp ------HHHHHHHHSCEEEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEECCGGGGCSCSSSSB
T ss_pred ------HHHHHHhhcCCCEEEECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcC-CCEEEEeCCceeeCCCCCCCC
Confidence 7888887 899999999987653 3567889999999999999999885 8999999999888754 367
Q ss_pred ccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCC---
Q psy11859 372 EEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQE--- 446 (851)
Q Consensus 372 ~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~--- 446 (851)
+|+.+..|.++ |+.||+.+|.++..++. +++++|+||++||||...
T Consensus 131 ~E~~~~~~~~~-----------------------------Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~ 181 (330)
T 2c20_A 131 TEETMTNPTNT-----------------------------YGETKLAIEKMLHWYSQASNLRYKIFRYFNVAGATPNGII 181 (330)
T ss_dssp CTTSCCCCSSH-----------------------------HHHHHHHHHHHHHHHHHTSSCEEEEEECSEEECCCTTCSS
T ss_pred CcCCCCCCCCh-----------------------------HHHHHHHHHHHHHHHHHHhCCcEEEEecCcccCCCCcCcc
Confidence 88776665555 99999999999988754 899999999999999631
Q ss_pred ---------CchhHhhhhcCC-ceE-EEE------ccc---------CceeEEEeecC---C-CCccEEEEeCCCCcccc
Q psy11859 447 ---------PVPGWVDSLNGP-VGV-LVA------SGK---------GVVRSMILNDL---S-TETQVFNISSNEVEAIT 496 (851)
Q Consensus 447 ---------p~p~~i~~~~~~-~~~-~~~------~g~---------~v~~~~~~~~~---~-~~~~iyni~~~~~~~~t 496 (851)
.++.++....+. ..+ +.+ .|. |+++++....+ . ..+++||++++ .++|
T Consensus 182 g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~--~~~s 259 (330)
T 2c20_A 182 GEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDLVAAHFLGLKDLQNGGESDFYNLGNG--NGFS 259 (330)
T ss_dssp CCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECEEEHHHHHHHHHHHHHHHHTTCCCEEEECCCT--TCBC
T ss_pred ccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCceeEeeEeHHHHHHHHHHHHhccccCCCCCeEEeCCC--CCcc
Confidence 134444444332 223 232 222 22222221111 1 23689999988 6899
Q ss_pred HHHHHHHHHHHhhc
Q psy11859 497 WGEIISRGKQLIYQ 510 (851)
Q Consensus 497 ~~el~~~~~~~~~~ 510 (851)
+.|+++.+.+.+|.
T Consensus 260 ~~e~~~~i~~~~g~ 273 (330)
T 2c20_A 260 VKEIVDAVREVTNH 273 (330)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999999875
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=265.50 Aligned_cols=238 Identities=19% Similarity=0.229 Sum_probs=175.2
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
.+++|+|||||||||||++|+++|++.|. .+|++++|...... +. +. ..++++++.+|+
T Consensus 29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~--~~------------l~-----~~~~v~~~~~Dl 87 (377)
T 2q1s_A 29 KLANTNVMVVGGAGFVGSNLVKRLLELGV--NQVHVVDNLLSAEK--IN------------VP-----DHPAVRFSETSI 87 (377)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTC--SEEEEECCCTTCCG--GG------------SC-----CCTTEEEECSCT
T ss_pred HhCCCEEEEECCccHHHHHHHHHHHHcCC--ceEEEEECCCCCch--hh------------cc-----CCCceEEEECCC
Confidence 36789999999999999999999999873 58899999764421 00 00 124799999999
Q ss_pred CCCcCCCCHHHHHHHhcCccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--
Q psy11859 295 LQANLGIKDSDLLMLQEEVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK-- 369 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~-- 369 (851)
+|++ ++..+++++|+|||+||..... .++.+.+++|+.||.+|+++|++.+++++|||+||+++|+...
T Consensus 88 ~d~~------~l~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~ 161 (377)
T 2q1s_A 88 TDDA------LLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFD 161 (377)
T ss_dssp TCHH------HHHHCCSCCSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC---------
T ss_pred CCHH------HHHHHhhCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCCCC
Confidence 9876 7888889999999999987654 3567889999999999999998872489999999998887643
Q ss_pred ccc--ccc---CC-CCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEeccccc
Q psy11859 370 VLE--EKL---YP-SPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVL 441 (851)
Q Consensus 370 ~i~--E~~---~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~ 441 (851)
+++ |+. +. .|. +.|+.||+.+|.++..++. +++++++||++||
T Consensus 162 ~~~~~E~~~~~~~~~~~-----------------------------~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~ 212 (377)
T 2q1s_A 162 DAKATEETDIVSLHNND-----------------------------SPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVY 212 (377)
T ss_dssp -----CCCCCCCSSCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEE
T ss_pred CcCcccccccccccCCC-----------------------------CchHHHHHHHHHHHHHHHHHhCCCEEEEeeccEE
Confidence 455 655 22 333 4499999999999988764 8999999999999
Q ss_pred CCCC---------CC-------chhHhhhhcCCceE-EEEcc---------cCceeE-EEeecC-CCCccEEEEeCCCCc
Q psy11859 442 PSFQ---------EP-------VPGWVDSLNGPVGV-LVASG---------KGVVRS-MILNDL-STETQVFNISSNEVE 493 (851)
Q Consensus 442 G~~~---------~p-------~p~~i~~~~~~~~~-~~~~g---------~~v~~~-~~~~~~-~~~~~iyni~~~~~~ 493 (851)
||.. .+ ++.++..+..+.++ +.+.| +|++++ +....+ ...+ +||++++ .
T Consensus 213 G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~i~~~~~~~~~g-~~~i~~~--~ 289 (377)
T 2q1s_A 213 GPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFVEDVANGLIACAADGTPGG-VYNIASG--K 289 (377)
T ss_dssp CTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCSGGGCCEECCEEHHHHHHHHHHHHHHCCTTE-EEECCCC--C
T ss_pred CCCCcccccccccCcccccccHHHHHHHHHHcCCCeEEeCCCCeEEeeEEHHHHHHHHHHHHHhcCCCC-eEEecCC--C
Confidence 9987 32 55566654333322 22332 456666 443332 2345 9999998 6
Q ss_pred cccHHHHHHHHHHHhhcC
Q psy11859 494 AITWGEIISRGKQLIYQY 511 (851)
Q Consensus 494 ~~t~~el~~~~~~~~~~~ 511 (851)
++|+.|+++.+.+.+|..
T Consensus 290 ~~s~~e~~~~i~~~~g~~ 307 (377)
T 2q1s_A 290 ETSIADLATKINEITGNN 307 (377)
T ss_dssp CEEHHHHHHHHHHHHTCC
T ss_pred ceeHHHHHHHHHHHhCCC
Confidence 899999999999998863
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=258.00 Aligned_cols=236 Identities=20% Similarity=0.295 Sum_probs=176.0
Q ss_pred CEEEEecCccHHHHHHHHHHHHh-CCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRS-CPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~-g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
|+|||||||||||++|+++|++. + .+|++++|....... +.+.+ +. ...+++++.+|++|+
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g---~~V~~~~r~~~~~~~-~~~~~---------~~-----~~~~~~~~~~Dl~d~ 62 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQ---DTVVNIDKLTYAGNL-ESLSD---------IS-----ESNRYNFEHADICDS 62 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCS---CEEEEEECCCTTCCG-GGGTT---------TT-----TCTTEEEEECCTTCH
T ss_pred CEEEEECCCchHhHHHHHHHHhcCC---CeEEEEecCCCCCch-hhhhh---------hh-----cCCCeEEEECCCCCH
Confidence 57999999999999999999997 5 689999986532111 11100 00 124789999999987
Q ss_pred cCCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhc--CCce-------EEEEeeeee
Q psy11859 298 NLGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKM--KKLV-------AFIHFSTAF 363 (851)
Q Consensus 298 ~lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~--~~~~-------~fV~vSTa~ 363 (851)
+ ++..+++ ++|+|||+||..... .++...+++|+.||.+++++|.+. + ++ +||++||++
T Consensus 63 ~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~-v~~~~~~~~~iv~~SS~~ 135 (361)
T 1kew_A 63 A------EITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSA-LGEDKKNNFRFHHISTDE 135 (361)
T ss_dssp H------HHHHHHHHHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHT-SCHHHHHHCEEEEEEEGG
T ss_pred H------HHHHHHhhcCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccC-cccccccCceEEEeCCHH
Confidence 6 7888887 899999999987643 345678999999999999999886 5 66 999999998
Q ss_pred eeCCCc------------ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--C
Q psy11859 364 CHPDQK------------VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--K 429 (851)
Q Consensus 364 ~~~~~~------------~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~ 429 (851)
+++... +++|+.+..|.+ .|+.||+.+|.++..++. +
T Consensus 136 v~g~~~~~~~~~~~~~~~~~~E~~~~~~~~-----------------------------~Y~~sK~~~e~~~~~~~~~~g 186 (361)
T 1kew_A 136 VYGDLPHPDEVENSVTLPLFTETTAYAPSS-----------------------------PYSASKASSDHLVRAWRRTYG 186 (361)
T ss_dssp GGCCCCCGGGSCTTSCCCCBCTTSCCCCCS-----------------------------HHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCCCcccccccccccCCCCCCCCCCCCCC-----------------------------ccHHHHHHHHHHHHHHHHHhC
Confidence 887543 556665444444 499999999999988765 8
Q ss_pred CCEEEEecccccCCCCCC---chhHhhhh-cCCceEEEEcccC---------ceeEEEeecC-CCCccEEEEeCCCCccc
Q psy11859 430 LPVVIVRPSIVLPSFQEP---VPGWVDSL-NGPVGVLVASGKG---------VVRSMILNDL-STETQVFNISSNEVEAI 495 (851)
Q Consensus 430 l~~~ivRp~~V~G~~~~p---~p~~i~~~-~~~~~~~~~~g~~---------v~~~~~~~~~-~~~~~iyni~~~~~~~~ 495 (851)
++++++||++||||...+ ++.++..+ .+....+++.|.. +++++....+ ...+++||++++ .++
T Consensus 187 i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~g~~~~v~~~--~~~ 264 (361)
T 1kew_A 187 LPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGH--NEK 264 (361)
T ss_dssp CCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCCTTCEEEECCC--CEE
T ss_pred CcEEEEeeceeECCCCCcccHHHHHHHHHHcCCCceEcCCCceeEeeEEHHHHHHHHHHHHhCCCCCCEEEecCC--Cee
Confidence 999999999999998753 56666664 3333333343332 2222221111 346789999998 689
Q ss_pred cHHHHHHHHHHHhhc
Q psy11859 496 TWGEIISRGKQLIYQ 510 (851)
Q Consensus 496 t~~el~~~~~~~~~~ 510 (851)
|+.|+++.+.+.+|.
T Consensus 265 s~~e~~~~i~~~~g~ 279 (361)
T 1kew_A 265 KNLDVVFTICDLLDE 279 (361)
T ss_dssp EHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHhCC
Confidence 999999999999886
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-27 Score=257.79 Aligned_cols=239 Identities=20% Similarity=0.198 Sum_probs=173.6
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|++.| .+|++++|..... ....+.. +.. ..+++++.+|++|++
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~-~~~~~~~---------l~~-----~~~~~~~~~Dl~d~~ 63 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQG---IDLIVFDNLSRKG-ATDNLHW---------LSS-----LGNFEFVHGDIRNKN 63 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCCSTT-HHHHHHH---------HHT-----TCCCEEEECCTTCHH
T ss_pred cEEEEeCCCchhHHHHHHHHHhCC---CEEEEEeCCCccC-chhhhhh---------hcc-----CCceEEEEcCCCCHH
Confidence 689999999999999999999988 7899999864321 1111211 111 136889999999876
Q ss_pred CCCCHHHHHHHhcC--ccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCce-EEEEeeeeeeeCCCc--c
Q psy11859 299 LGIKDSDLLMLQEE--VSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLV-AFIHFSTAFCHPDQK--V 370 (851)
Q Consensus 299 lgls~~~~~~~~~~--vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~-~fV~vSTa~~~~~~~--~ 370 (851)
++..++++ +|+|||+||..... +++...+++|+.||.+|+++|.+.+ ++ +|||+||+++++... +
T Consensus 64 ------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~-~~~~iv~~SS~~v~g~~~~~~ 136 (347)
T 1orr_A 64 ------DVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYN-SNCNIIYSSTNKVYGDLEQYK 136 (347)
T ss_dssp ------HHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEEEEGGGGTTCTTSC
T ss_pred ------HHHHHHhccCCCEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhC-CCceEEEeccHHHhCCCCcCC
Confidence 78888877 99999999987653 3567889999999999999999886 65 999999998887543 2
Q ss_pred c----------------ccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCE
Q psy11859 371 L----------------EEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPV 432 (851)
Q Consensus 371 i----------------~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~ 432 (851)
+ +|+.+..| .+.|+.||+.+|.++..++. ++++
T Consensus 137 ~~e~~~~~~~~~~~~~~~e~~~~~~-----------------------------~~~Y~~sK~~~E~~~~~~~~~~gi~~ 187 (347)
T 1orr_A 137 YNETETRYTCVDKPNGYDESTQLDF-----------------------------HSPYGCSKGAADQYMLDYARIFGLNT 187 (347)
T ss_dssp EEECSSCEEETTCTTCBCTTSCCCC-----------------------------CHHHHHHHHHHHHHHHHHHHHHCCEE
T ss_pred cccccccccccccccCccccCCCCC-----------------------------CCchHHHHHHHHHHHHHHHHHhCCcE
Confidence 2 22222222 35699999999999988765 8999
Q ss_pred EEEecccccCCCCCC------chhHhhhh-cCC-----ceEEEEccc---------CceeEEEeecCC---CCccEEEEe
Q psy11859 433 VIVRPSIVLPSFQEP------VPGWVDSL-NGP-----VGVLVASGK---------GVVRSMILNDLS---TETQVFNIS 488 (851)
Q Consensus 433 ~ivRp~~V~G~~~~p------~p~~i~~~-~~~-----~~~~~~~g~---------~v~~~~~~~~~~---~~~~iyni~ 488 (851)
+++||++||||...+ ++.++..+ .+. ....++.|. |+++++....+. ..+++||++
T Consensus 188 ~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~v~ 267 (347)
T 1orr_A 188 VVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIG 267 (347)
T ss_dssp EEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSCCEEECEEHHHHHHHHHHHHHTHHHHTTCEEEES
T ss_pred EEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCCCCeEEecCCcceEeeEEHHHHHHHHHHHHhccccCCCCEEEeC
Confidence 999999999997643 45555543 222 222334333 333333222222 246799999
Q ss_pred CCCCccccHHHHHHHHHHHhhcC
Q psy11859 489 SNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 489 ~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
++..+++|+.|+++.+.+.+|..
T Consensus 268 ~~~~~~~s~~e~~~~i~~~~g~~ 290 (347)
T 1orr_A 268 GTIVNSLSLLELFKLLEDYCNID 290 (347)
T ss_dssp SCGGGEEEHHHHHHHHHHHHTCC
T ss_pred CCCCCCccHHHHHHHHHHHhCCC
Confidence 88434699999999999998853
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=255.37 Aligned_cols=213 Identities=17% Similarity=0.197 Sum_probs=171.7
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|++.|++.| .+|++++|. .+|++|++
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~------------------------------------~~D~~d~~ 46 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEE---YDIYPFDKK------------------------------------LLDITNIS 46 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTT---EEEEEECTT------------------------------------TSCTTCHH
T ss_pred eEEEEECCCCHHHHHHHHHHHhCC---CEEEEeccc------------------------------------ccCCCCHH
Confidence 489999999999999999999987 789999882 27888776
Q ss_pred CCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC--ccc
Q psy11859 299 LGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ--KVL 371 (851)
Q Consensus 299 lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~--~~i 371 (851)
.+..+++ ++|+|||+||..... .++...+++|+.||.+++++|++.+ + +|||+||+++|+.. .++
T Consensus 47 ------~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~v~~SS~~vy~~~~~~~~ 118 (287)
T 3sc6_A 47 ------QVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVG-A-KLVYISTDYVFQGDRPEGY 118 (287)
T ss_dssp ------HHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHT-C-EEEEEEEGGGSCCCCSSCB
T ss_pred ------HHHHHHHhcCCCEEEECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEchhhhcCCCCCCCC
Confidence 7777777 799999999988764 3678899999999999999999986 5 69999999888765 478
Q ss_pred ccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCC-chh
Q psy11859 372 EEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEP-VPG 450 (851)
Q Consensus 372 ~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p-~p~ 450 (851)
+|+.++.|.++ |+.||+.+|+++..+.. +++++||++||||.+.. ++.
T Consensus 119 ~E~~~~~p~~~-----------------------------Y~~sK~~~E~~~~~~~~--~~~ilR~~~v~G~~~~~~~~~ 167 (287)
T 3sc6_A 119 DEFHNPAPINI-----------------------------YGASKYAGEQFVKELHN--KYFIVRTSWLYGKYGNNFVKT 167 (287)
T ss_dssp CTTSCCCCCSH-----------------------------HHHHHHHHHHHHHHHCS--SEEEEEECSEECSSSCCHHHH
T ss_pred CCCCCCCCCCH-----------------------------HHHHHHHHHHHHHHhCC--CcEEEeeeeecCCCCCcHHHH
Confidence 88887777766 99999999999998864 78999999999997765 566
Q ss_pred HhhhhcCCceEEEEcc--------cCceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHHHHhhcC
Q psy11859 451 WVDSLNGPVGVLVASG--------KGVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 451 ~i~~~~~~~~~~~~~g--------~~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
++..+..+.++.+... +|+++++....+...+++||++++ .++|+.|+++.+.+.+|..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~~~~~i~~~--~~~s~~e~~~~i~~~~g~~ 234 (287)
T 3sc6_A 168 MIRLGKEREEISVVADQIGSPTYVADLNVMINKLIHTSLYGTYHVSNT--GSCSWFEFAKKIFSYANMK 234 (287)
T ss_dssp HHHHHTTCSEEEEECSCEECCEEHHHHHHHHHHHHTSCCCEEEECCCB--SCEEHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCCCeEeecCcccCceEHHHHHHHHHHHHhCCCCCeEEEcCC--CcccHHHHHHHHHHHcCCC
Confidence 6766655555444421 233333333333334789999998 6899999999999999864
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=252.49 Aligned_cols=229 Identities=22% Similarity=0.243 Sum_probs=173.2
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|++.| .+|++++|...... + ....+++++.+|++|++
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G---~~V~~~~r~~~~~~--~-------------------~~~~~~~~~~~Dl~~~~ 56 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARG---LEVAVLDNLATGKR--E-------------------NVPKGVPFFRVDLRDKE 56 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT---CEEEEECCCSSCCG--G-------------------GSCTTCCEECCCTTCHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCC---CEEEEEECCCcCch--h-------------------hcccCeEEEECCCCCHH
Confidence 579999999999999999999998 68889988543310 0 01136778999999876
Q ss_pred CCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeee-eeeCC-C--c
Q psy11859 299 LGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTA-FCHPD-Q--K 369 (851)
Q Consensus 299 lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa-~~~~~-~--~ 369 (851)
++..+++ ++|+|||+||..... +++...+++|+.||.+++++|++.+ +++||++||. .+++. . .
T Consensus 57 ------~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~-~~~iv~~SS~~~~~g~~~~~~ 129 (311)
T 2p5y_A 57 ------GVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYG-VEKLVFASTGGAIYGEVPEGE 129 (311)
T ss_dssp ------HHHHHHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT-CSEEEEEEEHHHHHCCCCTTC
T ss_pred ------HHHHHHHhcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC-CCEEEEeCCChhhcCCCCCCC
Confidence 7777777 899999999987643 3466789999999999999999875 8999999998 77764 2 3
Q ss_pred ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC
Q psy11859 370 VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP 447 (851)
Q Consensus 370 ~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p 447 (851)
+++|+.+..|.++ |+.||+.+|.++..++. +++++++||++||||...+
T Consensus 130 ~~~E~~~~~~~~~-----------------------------Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~ 180 (311)
T 2p5y_A 130 RAEETWPPRPKSP-----------------------------YAASKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQDP 180 (311)
T ss_dssp CBCTTSCCCCCSH-----------------------------HHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCS
T ss_pred CcCCCCCCCCCCh-----------------------------HHHHHHHHHHHHHHHHHHcCCCEEEEeeccccCcCCCC
Confidence 6777766555555 99999999999988754 8999999999999998643
Q ss_pred ------chhHhhhhcCCceE-EE-----Eccc---------CceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHHH
Q psy11859 448 ------VPGWVDSLNGPVGV-LV-----ASGK---------GVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQ 506 (851)
Q Consensus 448 ------~p~~i~~~~~~~~~-~~-----~~g~---------~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~ 506 (851)
++.++..+..+.++ +. +.|. |+++++....+.. +++||++++ .++|+.|+++.+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~-~~~~~i~~~--~~~s~~e~~~~i~~ 257 (311)
T 2p5y_A 181 HGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALALFSL-EGIYNVGTG--EGHTTREVLMAVAE 257 (311)
T ss_dssp SSTTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHHHHHHHHHHHHC-CEEEEESCS--CCEEHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHHHHHHHHHHhCC-CCEEEeCCC--CCccHHHHHHHHHH
Confidence 45566654333333 33 3332 2222222111122 789999998 68999999999999
Q ss_pred Hhhc
Q psy11859 507 LIYQ 510 (851)
Q Consensus 507 ~~~~ 510 (851)
.+|.
T Consensus 258 ~~g~ 261 (311)
T 2p5y_A 258 AAGK 261 (311)
T ss_dssp HHTC
T ss_pred HhCC
Confidence 9885
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=253.99 Aligned_cols=240 Identities=16% Similarity=0.163 Sum_probs=173.9
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCC----CHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGL----TPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~----~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
+|+|||||||||||++|+++|++.| .+|++++|..... ...+.+.++ ... ...+++++.+|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~r~~~~~~~~~~~l---------~~~---~~~~~~~~~~D 66 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAG---YLPVVIDNFHNAFRGGGSLPESLRRV---------QEL---TGRSVEFEEMD 66 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTT---CCEEEEECSSSSCBCSSSSBHHHHHH---------HHH---HTCCCEEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEecCCcccccccccHHHHHHH---------Hhc---cCCceEEEECC
Confidence 5899999999999999999999998 6788998865430 011122111 110 11378899999
Q ss_pred CCCCcCCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC
Q psy11859 294 ILQANLGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ 368 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~ 368 (851)
+++++ ++..+++ ++|+|||+||..... +.+.+.+++|+.||.+|+++|++.+ +++||++||+++++..
T Consensus 67 ~~~~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~iv~~SS~~~~g~~ 139 (348)
T 1ek6_A 67 ILDQG------ALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG-VKNLVFSSSATVYGNP 139 (348)
T ss_dssp TTCHH------HHHHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGGCSC
T ss_pred CCCHH------HHHHHHHhcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhC-CCEEEEECcHHHhCCC
Confidence 99876 7777777 899999999987653 4566889999999999999998875 8999999999888753
Q ss_pred --cccccccCCCC-CCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-C--CCEEEEecccccC
Q psy11859 369 --KVLEEKLYPSP-VSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-K--LPVVIVRPSIVLP 442 (851)
Q Consensus 369 --~~i~E~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-~--l~~~ivRp~~V~G 442 (851)
.+++|+.+..| .++ |+.||+.+|.++..++. + ++++++||++|||
T Consensus 140 ~~~~~~E~~~~~p~~~~-----------------------------Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G 190 (348)
T 1ek6_A 140 QYLPLDEAHPTGGCTNP-----------------------------YGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTG 190 (348)
T ss_dssp SSSSBCTTSCCCCCSSH-----------------------------HHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEEC
T ss_pred CCCCcCCCCCCCCCCCc-----------------------------hHHHHHHHHHHHHHHHhcCCCcceEEEeeccccC
Confidence 36777765555 444 99999999999988753 4 9999999999999
Q ss_pred CCCC-------------CchhHhhhhc-CCceE-EEE------ccc---------CceeEEEeecC-C--CCc-cEEEEe
Q psy11859 443 SFQE-------------PVPGWVDSLN-GPVGV-LVA------SGK---------GVVRSMILNDL-S--TET-QVFNIS 488 (851)
Q Consensus 443 ~~~~-------------p~p~~i~~~~-~~~~~-~~~------~g~---------~v~~~~~~~~~-~--~~~-~iyni~ 488 (851)
|... .++.++..+. .+.++ +++ .|. |+++++....+ . ..+ ++||++
T Consensus 191 ~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~ni~ 270 (348)
T 1ek6_A 191 AHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLG 270 (348)
T ss_dssp CCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCCcccCCCCceEEeeEEHHHHHHHHHHHHhcccccCCceEEEeC
Confidence 9521 1344444444 22222 333 222 22222221111 1 233 899999
Q ss_pred CCCCccccHHHHHHHHHHHhhc
Q psy11859 489 SNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 489 ~~~~~~~t~~el~~~~~~~~~~ 510 (851)
++ .++|+.|+++.+.+.++.
T Consensus 271 ~~--~~~s~~e~~~~i~~~~g~ 290 (348)
T 1ek6_A 271 TG--TGYSVLQMVQAMEKASGK 290 (348)
T ss_dssp CS--CCEEHHHHHHHHHHHHCS
T ss_pred CC--CCccHHHHHHHHHHHhCC
Confidence 88 689999999999999885
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=256.32 Aligned_cols=230 Identities=20% Similarity=0.254 Sum_probs=175.5
Q ss_pred cccchhhhcCCCEEEEecCccHHHHHHHHHHHHh-CCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCC
Q psy11859 208 DMGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRS-CPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSR 286 (851)
Q Consensus 208 ~~~~i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~-g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~ 286 (851)
.++++.+++++|+|||||||||||++|+++|++. |+ .+|++++|.... ...+.+ .+ + ..+
T Consensus 11 ~~~~~~~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~--~~V~~~~r~~~~---~~~~~~--------~~----~--~~~ 71 (344)
T 2gn4_A 11 SMPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTTNA--KKIIVYSRDELK---QSEMAM--------EF----N--DPR 71 (344)
T ss_dssp -----CCTTTTCEEEEETTTSHHHHHHHHHHHHHCCC--SEEEEEESCHHH---HHHHHH--------HH----C--CTT
T ss_pred CCccHHHhhCCCEEEEECCCcHHHHHHHHHHHhhCCC--CEEEEEECChhh---HHHHHH--------Hh----c--CCC
Confidence 3467888899999999999999999999999999 73 489999996421 111111 11 1 147
Q ss_pred eEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeee
Q psy11859 287 LHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAF 363 (851)
Q Consensus 287 v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~ 363 (851)
+.++.+|++|++ ++..+++++|+|||+||..... ..+.+.+++|+.||.+++++|.+.+ +++||++||..
T Consensus 72 v~~~~~Dl~d~~------~l~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~-v~~~V~~SS~~ 144 (344)
T 2gn4_A 72 MRFFIGDVRDLE------RLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNA-ISQVIALSTDK 144 (344)
T ss_dssp EEEEECCTTCHH------HHHHHTTTCSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-CSEEEEECCGG
T ss_pred EEEEECCCCCHH------HHHHHHhcCCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEecCCc
Confidence 999999999876 8888999999999999987643 3467889999999999999999985 89999999953
Q ss_pred eeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh-----CCCCEEEEecc
Q psy11859 364 CHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK-----TKLPVVIVRPS 438 (851)
Q Consensus 364 ~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~-----~~l~~~ivRp~ 438 (851)
+ ..|.+ .|+.||+++|.++..++ .+++++++|||
T Consensus 145 ~------------~~p~~-----------------------------~Y~~sK~~~E~~~~~~~~~~~~~g~~~~~vRpg 183 (344)
T 2gn4_A 145 A------------ANPIN-----------------------------LYGATKLCSDKLFVSANNFKGSSQTQFSVVRYG 183 (344)
T ss_dssp G------------SSCCS-----------------------------HHHHHHHHHHHHHHHGGGCCCSSCCEEEEECCC
T ss_pred c------------CCCcc-----------------------------HHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 2 12333 49999999999999876 37999999999
Q ss_pred cccCCCCCCchhHhhhhcCCc-eEEEEcccCceeEEEeecC-----------CCCccEEEEeCCCCccccHHHHHHHHHH
Q psy11859 439 IVLPSFQEPVPGWVDSLNGPV-GVLVASGKGVVRSMILNDL-----------STETQVFNISSNEVEAITWGEIISRGKQ 506 (851)
Q Consensus 439 ~V~G~~~~p~p~~i~~~~~~~-~~~~~~g~~v~~~~~~~~~-----------~~~~~iyni~~~~~~~~t~~el~~~~~~ 506 (851)
+|+||.+..+|.|+..+..+. ++.+..+ +..+.++...+ ...+++||++++ ++++.|+++.+.+
T Consensus 184 ~v~g~~~~~i~~~~~~~~~g~~~~~i~~~-~~~r~~i~v~D~a~~v~~~l~~~~~g~~~~~~~~---~~s~~el~~~i~~ 259 (344)
T 2gn4_A 184 NVVGSRGSVVPFFKKLVQNKASEIPITDI-RMTRFWITLDEGVSFVLKSLKRMHGGEIFVPKIP---SMKMTDLAKALAP 259 (344)
T ss_dssp EETTCTTSHHHHHHHHHHHTCCCEEESCT-TCEEEEECHHHHHHHHHHHHHHCCSSCEEEECCC---EEEHHHHHHHHCT
T ss_pred cEECCCCCHHHHHHHHHHcCCCceEEeCC-CeEEeeEEHHHHHHHHHHHHhhccCCCEEecCCC---cEEHHHHHHHHHH
Confidence 999999888898888865444 5555433 33444443222 346789998665 5899999999986
Q ss_pred Hh
Q psy11859 507 LI 508 (851)
Q Consensus 507 ~~ 508 (851)
..
T Consensus 260 ~~ 261 (344)
T 2gn4_A 260 NT 261 (344)
T ss_dssp TC
T ss_pred hC
Confidence 54
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.1e-27 Score=256.04 Aligned_cols=236 Identities=21% Similarity=0.269 Sum_probs=177.9
Q ss_pred cchhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEE
Q psy11859 210 GDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHI 289 (851)
Q Consensus 210 ~~i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~ 289 (851)
+.-++.+++|+|||||||||||++|+++|++.| .+|++++|....... . . ....++++
T Consensus 12 ~~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~------~-----~--------~~l~~v~~ 69 (330)
T 2pzm_A 12 SGLVPRGSHMRILITGGAGCLGSNLIEHWLPQG---HEILVIDNFATGKRE------V-----L--------PPVAGLSV 69 (330)
T ss_dssp --CCSTTTCCEEEEETTTSHHHHHHHHHHGGGT---CEEEEEECCSSSCGG------G-----S--------CSCTTEEE
T ss_pred cCCcccCCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCCccchh------h-----h--------hccCCceE
Confidence 445567889999999999999999999999998 789999996543210 0 0 01147899
Q ss_pred EEcCCCCCcCCCCHHHHHHHhc--CccEEEEccccCCcc--hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeee
Q psy11859 290 IEGDILQANLGIKDSDLLMLQE--EVSVVFNGAASLKLE--AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCH 365 (851)
Q Consensus 290 v~gDi~~~~lgls~~~~~~~~~--~vd~ViH~AA~~~~~--~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~ 365 (851)
+.+|++|++ ++..+++ ++|+|||+||..... ..+. +++|+.||.+++++|.+.+ +++||++||.+++
T Consensus 70 ~~~Dl~d~~------~~~~~~~~~~~D~vih~A~~~~~~~~~~~~--~~~N~~~~~~l~~a~~~~~-~~~iV~~SS~~~~ 140 (330)
T 2pzm_A 70 IEGSVTDAG------LLERAFDSFKPTHVVHSAAAYKDPDDWAED--AATNVQGSINVAKAASKAG-VKRLLNFQTALCY 140 (330)
T ss_dssp EECCTTCHH------HHHHHHHHHCCSEEEECCCCCSCTTCHHHH--HHHHTHHHHHHHHHHHHHT-CSEEEEEEEGGGG
T ss_pred EEeeCCCHH------HHHHHHhhcCCCEEEECCccCCCccccChh--HHHHHHHHHHHHHHHHHcC-CCEEEEecCHHHh
Confidence 999999876 7888888 999999999987652 3343 8999999999999999875 8999999999888
Q ss_pred CCCc----ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEeccccc
Q psy11859 366 PDQK----VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVL 441 (851)
Q Consensus 366 ~~~~----~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~ 441 (851)
+... +++|+. .|. +.|+.||+.+|.++..+ +++.+++||++||
T Consensus 141 ~~~~~~~~~~~E~~--~~~-----------------------------~~Y~~sK~~~e~~~~~~--~~~~~~iR~~~v~ 187 (330)
T 2pzm_A 141 GRPATVPIPIDSPT--APF-----------------------------TSYGISKTAGEAFLMMS--DVPVVSLRLANVT 187 (330)
T ss_dssp CSCSSSSBCTTCCC--CCC-----------------------------SHHHHHHHHHHHHHHTC--SSCEEEEEECEEE
T ss_pred CCCccCCCCcCCCC--CCC-----------------------------ChHHHHHHHHHHHHHHc--CCCEEEEeeeeeE
Confidence 7542 455554 333 44999999999999887 8999999999999
Q ss_pred CCCCC--CchhHhhhhcCCce-------EEEEcccCcee-EEEeecCCCCccEEEEeCCCCccccHHHHHHHHHHHhhcC
Q psy11859 442 PSFQE--PVPGWVDSLNGPVG-------VLVASGKGVVR-SMILNDLSTETQVFNISSNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 442 G~~~~--p~p~~i~~~~~~~~-------~~~~~g~~v~~-~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
||+.. .++.++..+..+.. .-+...+|+++ ++....+...+++||++++ .++|+.|+++.+.+.+|..
T Consensus 188 gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~a~~~~~~~~~g~~~~v~~~--~~~s~~e~~~~i~~~~g~~ 265 (330)
T 2pzm_A 188 GPRLAIGPIPTFYKRLKAGQKCFCSDTVRDFLDMSDFLAIADLSLQEGRPTGVFNVSTG--EGHSIKEVFDVVLDYVGAT 265 (330)
T ss_dssp CTTCCSSHHHHHHHHHHTTCCCCEESCEECEEEHHHHHHHHHHHTSTTCCCEEEEESCS--CCEEHHHHHHHHHHHHTCC
T ss_pred CcCCCCCHHHHHHHHHHcCCEEeCCCCEecceeHHHHHHHHHHHHhhcCCCCEEEeCCC--CCCCHHHHHHHHHHHhCCC
Confidence 99862 24555555332221 11222345666 5544433222889999998 6899999999999998864
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=99.94 E-value=9e-28 Score=258.45 Aligned_cols=219 Identities=12% Similarity=0.044 Sum_probs=167.1
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++|+||||| +||||++|++.|++.| .+|++++|..... .++++++.+|++|
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g---~~V~~~~r~~~~~-------------------------~~~~~~~~~Dl~d 52 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQG---HEVTGLRRSAQPM-------------------------PAGVQTLIADVTR 52 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTT---CCEEEEECTTSCC-------------------------CTTCCEEECCTTC
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCC---CEEEEEeCCcccc-------------------------ccCCceEEccCCC
Confidence 468999999 5999999999999998 6889999976531 2478899999999
Q ss_pred CcCCCCHHHHHHHhcC-ccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--cccc
Q psy11859 297 ANLGIKDSDLLMLQEE-VSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--VLEE 373 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~-vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~i~E 373 (851)
++ ++..++++ +|+|||+||.. ..++...+++|+.||.+|+++|++.+ +++|||+||+.+|+... +++|
T Consensus 53 ~~------~~~~~~~~~~d~vih~a~~~--~~~~~~~~~~n~~~~~~ll~a~~~~~-~~~~v~~SS~~vyg~~~~~~~~E 123 (286)
T 3gpi_A 53 PD------TLASIVHLRPEILVYCVAAS--EYSDEHYRLSYVEGLRNTLSALEGAP-LQHVFFVSSTGVYGQEVEEWLDE 123 (286)
T ss_dssp GG------GCTTGGGGCCSEEEECHHHH--HHC-----CCSHHHHHHHHHHTTTSC-CCEEEEEEEGGGCCCCCSSEECT
T ss_pred hH------HHHHhhcCCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHHHHHhhCC-CCEEEEEcccEEEcCCCCCCCCC
Confidence 87 66667776 99999999974 34566788999999999999998864 89999999998887654 6788
Q ss_pred ccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhHhh
Q psy11859 374 KLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVD 453 (851)
Q Consensus 374 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~i~ 453 (851)
+.+..|.++ |+.||+++|.+ ..+ ++++|+||++||||.... |+.
T Consensus 124 ~~~~~p~~~-----------------------------Y~~sK~~~E~~-~~~---~~~~ilR~~~v~G~~~~~---~~~ 167 (286)
T 3gpi_A 124 DTPPIAKDF-----------------------------SGKRMLEAEAL-LAA---YSSTILRFSGIYGPGRLR---MIR 167 (286)
T ss_dssp TSCCCCCSH-----------------------------HHHHHHHHHHH-GGG---SSEEEEEECEEEBTTBCH---HHH
T ss_pred CCCCCCCCh-----------------------------hhHHHHHHHHH-Hhc---CCeEEEecccccCCCchh---HHH
Confidence 877777766 99999999999 654 999999999999998763 333
Q ss_pred hhcCC-------ceEEEEcccCceeEEEeecC----CCCccEEEEeCCCCccccHHHHHHHHHHHhhcC
Q psy11859 454 SLNGP-------VGVLVASGKGVVRSMILNDL----STETQVFNISSNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 454 ~~~~~-------~~~~~~~g~~v~~~~~~~~~----~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
.+... ...-+...+|+++++....+ ...+++||++++ .++|+.|+++.+.+.+|..
T Consensus 168 ~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~e~~~~i~~~~g~~ 234 (286)
T 3gpi_A 168 QAQTPEQWPARNAWTNRIHRDDGAAFIAYLIQQRSHAVPERLYIVTDN--QPLPVHDLLRWLADRQGIA 234 (286)
T ss_dssp HTTCGGGSCSSBCEECEEEHHHHHHHHHHHHHHHTTSCCCSEEEECCS--CCEEHHHHHHHHHHHTTCC
T ss_pred HHHhcccCCCcCceeEEEEHHHHHHHHHHHHhhhccCCCCceEEEeCC--CCCCHHHHHHHHHHHcCCC
Confidence 33221 11111222344444433222 256789999998 6899999999999998864
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-26 Score=257.83 Aligned_cols=244 Identities=19% Similarity=0.213 Sum_probs=173.1
Q ss_pred CCEEEEecCccHHHHHHHHHHH-HhCCCccEEEEEecCCCCCC------HHHHHHHHhcChhhHHHhhhCccc-CCC---
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLL-RSCPDIGKVYILCRAKRGLT------PKARLAEFSKLPVFERLRKECPAQ-LSR--- 286 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll-~~g~~v~~V~~l~R~~~~~~------~~~rl~~~~~~~~f~~l~~~~~~~-~~~--- 286 (851)
+|+|||||||||||++|+++|+ +.| .+|++++|...... ..+.+.+. +.+..... ..+
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 70 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTN---HSVVIVDSLVGTHGKSDHVETRENVARK--------LQQSDGPKPPWADRY 70 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCC---CEEEEEECCTTTTTCCTTSCCHHHHHHH--------HHHSCSSCCTTTTCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCC---CEEEEEecCCcccccccccchHHHHHHH--------HHHhhccccccCCce
Confidence 5799999999999999999999 887 78999998754320 01222211 11111000 123
Q ss_pred eEEEEcCCCCCcCCCCHHHHHHHhc--C-ccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEee
Q psy11859 287 LHIIEGDILQANLGIKDSDLLMLQE--E-VSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFS 360 (851)
Q Consensus 287 v~~v~gDi~~~~lgls~~~~~~~~~--~-vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vS 360 (851)
++++.+|++|++ .+..+++ + +|+|||+||..... +++...+++|+.||.+|+++|++.+ +++|||+|
T Consensus 71 ~~~~~~Dl~d~~------~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~-~~~iv~~S 143 (397)
T 1gy8_A 71 AALEVGDVRNED------FLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHK-CDKIIFSS 143 (397)
T ss_dssp CEEEESCTTCHH------HHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEE
T ss_pred EEEEECCCCCHH------HHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhC-CCEEEEEC
Confidence 899999999886 7777776 6 99999999987653 4567889999999999999998885 89999999
Q ss_pred eeeeeCCC---------cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--C
Q psy11859 361 TAFCHPDQ---------KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--K 429 (851)
Q Consensus 361 Ta~~~~~~---------~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~ 429 (851)
|+++++.. .+++|+.+..|.++ |+.||+.+|+++..++. +
T Consensus 144 S~~v~g~~~~~~~~~~~~~~~E~~~~~p~~~-----------------------------Y~~sK~~~e~~~~~~~~~~g 194 (397)
T 1gy8_A 144 SAAIFGNPTMGSVSTNAEPIDINAKKSPESP-----------------------------YGESKLIAERMIRDCAEAYG 194 (397)
T ss_dssp EGGGTBSCCC-----CCCCBCTTSCCBCSSH-----------------------------HHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHhCCCCcccccccccCcCccCCCCCCCc-----------------------------hHHHHHHHHHHHHHHHHHHC
Confidence 99887643 35666655544444 99999999999988765 8
Q ss_pred CCEEEEecccccCCCCC------------CchhHh-----hhhcCCc-----------eE-EEE------cccC------
Q psy11859 430 LPVVIVRPSIVLPSFQE------------PVPGWV-----DSLNGPV-----------GV-LVA------SGKG------ 468 (851)
Q Consensus 430 l~~~ivRp~~V~G~~~~------------p~p~~i-----~~~~~~~-----------~~-~~~------~g~~------ 468 (851)
++++++||++||||... .++.++ ....+.. ++ +++ .|..
T Consensus 195 i~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~ 274 (397)
T 1gy8_A 195 IKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVH 274 (397)
T ss_dssp CEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC-----------CCCEEEECSCSSSTTSSCEECEEE
T ss_pred CcEEEEeccceeCCCccccccccccchhHHHHHHHHHHHHHHHhcCccccccccccCCCceeecCcccCCCCCeeEeeEe
Confidence 99999999999999632 134444 3233332 23 333 2222
Q ss_pred ---ceeEEEeecC---CCC----c---cEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 469 ---VVRSMILNDL---STE----T---QVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 469 ---v~~~~~~~~~---~~~----~---~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
+++++....+ ... + ++||++++ .++|+.|+++.+.+.++.
T Consensus 275 v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~ni~~~--~~~s~~e~~~~i~~~~g~ 327 (397)
T 1gy8_A 275 VCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTS--RGYSVREVIEVARKTTGH 327 (397)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCS--CCEEHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcccccccccccCCCcEEEeCCC--CcccHHHHHHHHHHHhCC
Confidence 2222221111 111 3 89999988 689999999999999875
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-27 Score=253.74 Aligned_cols=227 Identities=17% Similarity=0.116 Sum_probs=170.9
Q ss_pred CCEEEEecCccHHHHHHHHHHHHh--CCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRS--CPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~--g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+|+|||||||||||++|+++|++. | .+|++++|..... .+. ++++++.+|++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g---~~V~~~~r~~~~~----~~~-------------------~~~~~~~~D~~ 55 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGT---ENVIASDIRKLNT----DVV-------------------NSGPFEVVNAL 55 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCG---GGEEEEESCCCSC----HHH-------------------HSSCEEECCTT
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCC---CEEEEEcCCCccc----ccc-------------------CCCceEEecCC
Confidence 578999999999999999999998 6 6789999976541 010 15678999999
Q ss_pred CCcCCCCHHHHHHHhc--CccEEEEccccCCcc--hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC---
Q psy11859 296 QANLGIKDSDLLMLQE--EVSVVFNGAASLKLE--AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ--- 368 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~--~vd~ViH~AA~~~~~--~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~--- 368 (851)
|++ ++..+++ ++|+|||+||..... .++...+++|+.||.+|+++|++.+ +++|||+||+.+++..
T Consensus 56 d~~------~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~ 128 (312)
T 2yy7_A 56 DFN------QIEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKK-IKKIFWPSSIAVFGPTTPK 128 (312)
T ss_dssp CHH------HHHHHHHHTTCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTS-CSEEECCEEGGGCCTTSCS
T ss_pred CHH------HHHHHHhhcCCCEEEECCccCCCchhhChHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeccHHHhCCCCCC
Confidence 876 7888877 899999999976542 4567889999999999999999875 8999999999888763
Q ss_pred cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCC
Q psy11859 369 KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 369 ~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~ 446 (851)
.+++|+.+..|.++ |+.||+.+|.++..++. +++++++||++||||...
T Consensus 129 ~~~~e~~~~~~~~~-----------------------------Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~ 179 (312)
T 2yy7_A 129 ENTPQYTIMEPSTV-----------------------------YGISKQAGERWCEYYHNIYGVDVRSIRYPGLISWSTP 179 (312)
T ss_dssp SSBCSSCBCCCCSH-----------------------------HHHHHHHHHHHHHHHHHHHCCEEECEEECEEECSSSC
T ss_pred CCccccCcCCCCch-----------------------------hHHHHHHHHHHHHHHHHhcCCcEEEEeCCeEecCCCC
Confidence 25667665555555 99999999999988754 899999999999997643
Q ss_pred C--------chhHhhhhcCCceEEEEcccCc---------eeEEEeecCCC-----CccEEEEeCCCCccccHHHHHHHH
Q psy11859 447 P--------VPGWVDSLNGPVGVLVASGKGV---------VRSMILNDLST-----ETQVFNISSNEVEAITWGEIISRG 504 (851)
Q Consensus 447 p--------~p~~i~~~~~~~~~~~~~g~~v---------~~~~~~~~~~~-----~~~iyni~~~~~~~~t~~el~~~~ 504 (851)
| ++.+.+.+.++....++.+... ++++....+.. .+++||+++ .++|+.|+++.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~ni~~---~~~s~~e~~~~i 256 (312)
T 2yy7_A 180 PGGGTTDYAVDIFYKAIADKKYECFLSSETKMPMMYMDDAIDATINIMKAPVEKIKIHSSYNLAA---MSFTPTEIANEI 256 (312)
T ss_dssp CCSCTTTHHHHHHHHHHHTSEEEESSCTTCCEEEEEHHHHHHHHHHHHHSCGGGCCCSSCEECCS---EEECHHHHHHHH
T ss_pred CCCchhhhHHHHHHHHHcCCCeEEecCCCceeeeeeHHHHHHHHHHHHhCcccccccCceEEeCC---CccCHHHHHHHH
Confidence 2 2233344444444444434332 22222211111 248999984 479999999999
Q ss_pred HHHhh
Q psy11859 505 KQLIY 509 (851)
Q Consensus 505 ~~~~~ 509 (851)
.+.++
T Consensus 257 ~~~~~ 261 (312)
T 2yy7_A 257 KKHIP 261 (312)
T ss_dssp HTTCT
T ss_pred HHHCC
Confidence 99876
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-26 Score=252.71 Aligned_cols=241 Identities=19% Similarity=0.203 Sum_probs=175.2
Q ss_pred CEEEEecCccHHHHHHHHHHHHh-CCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRS-CPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~-g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
|+|||||||||||++|+++|++. | .+|++++|...... . +. ...+++++.+|++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g---~~V~~~~r~~~~~~------~---------~~-----~~~~~~~~~~D~~~~ 57 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDH---YEVYGLDIGSDAIS------R---------FL-----NHPHFHFVEGDISIH 57 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT---CEEEEEESCCGGGG------G---------GT-----TCTTEEEEECCTTTC
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCC---CEEEEEeCCcchHH------H---------hh-----cCCCeEEEeccccCc
Confidence 58999999999999999999997 6 68999999753210 0 00 124789999999985
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--ccc
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--VLE 372 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~i~ 372 (851)
. +.+..+++++|+|||+||..... .++.+.+++|+.||.+++++|.+.+ ++|||+||+++++... +++
T Consensus 58 ~-----~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~v~~SS~~v~g~~~~~~~~ 130 (345)
T 2bll_A 58 S-----EWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPSTSEVYGMCSDKYFD 130 (345)
T ss_dssp S-----HHHHHHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECCGGGGBTCCCSSBC
T ss_pred H-----HHHHhhccCCCEEEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEecHHHcCCCCCCCcC
Confidence 3 25667778999999999987642 4567889999999999999999875 8999999998887543 566
Q ss_pred cccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC---
Q psy11859 373 EKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP--- 447 (851)
Q Consensus 373 E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p--- 447 (851)
|+.+..+..| .....+.|+.||+.+|+++..++. +++++++||++||||+..+
T Consensus 131 e~~~~~~~~~----------------------~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~ 188 (345)
T 2bll_A 131 EDHSNLIVGP----------------------VNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNA 188 (345)
T ss_dssp TTTCCCBCCC----------------------TTCGGGHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTC
T ss_pred CcccccccCc----------------------ccCcccccHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCcccccc
Confidence 7654322111 001125699999999999988764 8999999999999998642
Q ss_pred --------chhHhhhhcCCceE-EEEccc---------CceeEEEeecCC----CCccEEEEeCCCCccccHHHHHHHHH
Q psy11859 448 --------VPGWVDSLNGPVGV-LVASGK---------GVVRSMILNDLS----TETQVFNISSNEVEAITWGEIISRGK 505 (851)
Q Consensus 448 --------~p~~i~~~~~~~~~-~~~~g~---------~v~~~~~~~~~~----~~~~iyni~~~~~~~~t~~el~~~~~ 505 (851)
++.++..+..+.++ +.+.|. |+++++....+. ..+++||+++++ .++|+.|+++.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~g~~~~i~~~~-~~~s~~e~~~~i~ 267 (345)
T 2bll_A 189 ARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPE-NEASIEELGEMLL 267 (345)
T ss_dssp SBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCTT-SEEEHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHcCCCcEEECCCCEEEEEEEHHHHHHHHHHHHhhccccCCCceEEeCCCC-CCCCHHHHHHHHH
Confidence 45566554333333 333333 233332222112 357899999882 2799999999999
Q ss_pred HHhhcCC
Q psy11859 506 QLIYQYP 512 (851)
Q Consensus 506 ~~~~~~p 512 (851)
+.++..+
T Consensus 268 ~~~g~~~ 274 (345)
T 2bll_A 268 ASFEKHP 274 (345)
T ss_dssp HHHHTCT
T ss_pred HHhCCCc
Confidence 9988644
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=259.44 Aligned_cols=244 Identities=15% Similarity=0.096 Sum_probs=167.4
Q ss_pred hhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCC--------------HHHHHHHHhcChhhHHHhh
Q psy11859 213 ARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLT--------------PKARLAEFSKLPVFERLRK 278 (851)
Q Consensus 213 ~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~--------------~~~rl~~~~~~~~f~~l~~ 278 (851)
..+..+++|||||||||||++|+++|++.| .+|++++|...+.. ..+.+.++ ..
T Consensus 6 ~~~~~~~~vlVTG~tGfIG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~ 73 (404)
T 1i24_A 6 HHHHHGSRVMVIGGDGYCGWATALHLSKKN---YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRW---------KA 73 (404)
T ss_dssp ------CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHH---------HH
T ss_pred ccccCCCeEEEeCCCcHHHHHHHHHHHhCC---CeEEEEEecCccccccccccccccccchhhhhhhhH---------hh
Confidence 346788999999999999999999999998 68999987532100 01111110 00
Q ss_pred hCcccCCCeEEEEcCCCCCcCCCCHHHHHHHhcC--ccEEEEccccCCcch---hH---HHHHHHHHHHHHHHHHHHHhc
Q psy11859 279 ECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEE--VSVVFNGAASLKLEA---EL---KENVAANTRGTQRLLDIALKM 350 (851)
Q Consensus 279 ~~~~~~~~v~~v~gDi~~~~lgls~~~~~~~~~~--vd~ViH~AA~~~~~~---~~---~~~~~~Nv~Gt~~ll~~a~~~ 350 (851)
....+++++.+|+++++ ++..++++ +|+|||+||...... ++ ...+++|+.||.+|+++|.+.
T Consensus 74 ---~~~~~v~~~~~Dl~d~~------~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~ 144 (404)
T 1i24_A 74 ---LTGKSIELYVGDICDFE------FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEF 144 (404)
T ss_dssp ---HHCCCCEEEESCTTSHH------HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccCCceEEEECCCCCHH------HHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHh
Confidence 01247899999999876 77777776 999999999876432 22 347899999999999999988
Q ss_pred CCc-eEEEEeeeeeeeCCCc-ccccccCC-----------CCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHH
Q psy11859 351 KKL-VAFIHFSTAFCHPDQK-VLEEKLYP-----------SPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKR 417 (851)
Q Consensus 351 ~~~-~~fV~vSTa~~~~~~~-~i~E~~~~-----------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~ 417 (851)
+ + ++||++||+++++... +++|+.+. .|..+ .+.|+.||+
T Consensus 145 ~-~~~~~V~~SS~~vyg~~~~~~~E~~~~~~~~~~~~~~~~~~~~--------------------------~~~Y~~sK~ 197 (404)
T 1i24_A 145 G-EECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQA--------------------------SSFYHLSKV 197 (404)
T ss_dssp C-TTCEEEEECCGGGGCCCSSCBCSSEEEEEETTEEEEEECCCCC--------------------------CSHHHHHHH
T ss_pred C-CCcEEEEeCcHHHhCCCCCCCCccccccccccccccccCCCCC--------------------------CChhHHHHH
Confidence 6 5 6999999998887543 45554210 11111 356999999
Q ss_pred HHHHHHHHHhC--CCCEEEEecccccCCCCCC--------------------chhHhhhhcCCceE-EEEcccCceeEEE
Q psy11859 418 LTETLVDEYKT--KLPVVIVRPSIVLPSFQEP--------------------VPGWVDSLNGPVGV-LVASGKGVVRSMI 474 (851)
Q Consensus 418 ~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p--------------------~p~~i~~~~~~~~~-~~~~g~~v~~~~~ 474 (851)
++|.++..++. +++++++||++||||+..+ ++.++..+..+.++ +.+.|......++
T Consensus 198 ~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 277 (404)
T 1i24_A 198 HDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLD 277 (404)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCHHHHHHHHHHHTCCEEEETTSCCEEEEEE
T ss_pred HHHHHHHHHHHhcCCeEEEEecceeeCCCCCccccccccccccccccchhhHHHHHHHHHHcCCeeEEeCCCCceECcEE
Confidence 99999988754 8999999999999998632 45666664433343 4444432222222
Q ss_pred e---------ecC-CC-Cc--cEEEEeCCCCccccHHHHHHHHHHH
Q psy11859 475 L---------NDL-ST-ET--QVFNISSNEVEAITWGEIISRGKQL 507 (851)
Q Consensus 475 ~---------~~~-~~-~~--~iyni~~~~~~~~t~~el~~~~~~~ 507 (851)
. +.+ .. .+ ++||+++ .++|+.|+++.+.+.
T Consensus 278 v~Dva~a~~~~l~~~~~~g~~~~yni~~---~~~s~~e~~~~i~~~ 320 (404)
T 1i24_A 278 IRDTVQCVEIAIANPAKAGEFRVFNQFT---EQFSVNELASLVTKA 320 (404)
T ss_dssp HHHHHHHHHHHHHSCCCTTCEEEEEECS---EEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCCceEEEECC---CCCcHHHHHHHHHHH
Confidence 2 111 22 34 6999976 369999999999997
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-26 Score=250.15 Aligned_cols=239 Identities=21% Similarity=0.181 Sum_probs=177.7
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++|+|||||||||||++|+++|++.| .+|++++|....... .++..+. ...+++++.+|++|
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G---~~V~~~~r~~~~~~~-~~~~~~~--------------~~~~~~~~~~Dl~d 63 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKG---YEVYGADRRSGEFAS-WRLKELG--------------IENDVKIIHMDLLE 63 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEECSCCSTTTT-HHHHHTT--------------CTTTEEECCCCTTC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEECCCccccc-ccHhhcc--------------ccCceeEEECCCCC
Confidence 57899999999999999999999998 789999997654321 2222110 12378999999998
Q ss_pred CcCCCCHHHHHHHhcC--ccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCc-eEEEEeeeeeeeCCCc-
Q psy11859 297 ANLGIKDSDLLMLQEE--VSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKL-VAFIHFSTAFCHPDQK- 369 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~--vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~-~~fV~vSTa~~~~~~~- 369 (851)
++ ++..++++ +|+|||+||..... +++...+++|+.||.+++++|.+++ + ++||++||+++||...
T Consensus 64 ~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~-~~~~iv~~SS~~vyg~~~~ 136 (345)
T 2z1m_A 64 FS------NIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVK-PDTKFYQASTSEMFGKVQE 136 (345)
T ss_dssp HH------HHHHHHHHHCCSEEEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHC-TTCEEEEEEEGGGGCSCSS
T ss_pred HH------HHHHHHHhcCCCEEEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhC-CCceEEEEechhhcCCCCC
Confidence 76 77777764 69999999987653 4577889999999999999999875 6 8999999998887643
Q ss_pred -ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCC
Q psy11859 370 -VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 370 -~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~ 446 (851)
+++|+.+..|.++ |+.||+.+|.++..++. +++++++|++++|||+..
T Consensus 137 ~~~~e~~~~~~~~~-----------------------------Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~ 187 (345)
T 2z1m_A 137 IPQTEKTPFYPRSP-----------------------------YAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRG 187 (345)
T ss_dssp SSBCTTSCCCCCSH-----------------------------HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSC
T ss_pred CCCCccCCCCCCCh-----------------------------hHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCCC
Confidence 5677665555555 99999999999988765 899999999999999754
Q ss_pred C--c----hhHhhhh-cCCc-eEEEEcc---------cCceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHHHHhh
Q psy11859 447 P--V----PGWVDSL-NGPV-GVLVASG---------KGVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQLIY 509 (851)
Q Consensus 447 p--~----p~~i~~~-~~~~-~~~~~~g---------~~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~~~~ 509 (851)
. + +.++..+ .+.. ....+.+ +|+++++....+...+++||++++ .++|+.|+++.+.+.+|
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~a~~~~~~~~~~~~~~i~~~--~~~s~~e~~~~i~~~~g 265 (345)
T 2z1m_A 188 IEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMMQQPEPDDYVIATG--ETHTVREFVEKAAKIAG 265 (345)
T ss_dssp TTSHHHHHHHHHHHHHTTSCSCEEESCTTCEECCEEHHHHHHHHHHHHTSSSCCCEEECCS--CCEEHHHHHHHHHHHTT
T ss_pred CcchhHHHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHHHHHHHHHHHhCCCCceEEEeCC--CCccHHHHHHHHHHHhC
Confidence 2 2 3334332 3322 2233333 233333333223334579999998 68999999999999988
Q ss_pred cC
Q psy11859 510 QY 511 (851)
Q Consensus 510 ~~ 511 (851)
..
T Consensus 266 ~~ 267 (345)
T 2z1m_A 266 FD 267 (345)
T ss_dssp CC
T ss_pred CC
Confidence 53
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-27 Score=253.89 Aligned_cols=228 Identities=21% Similarity=0.212 Sum_probs=165.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCC-HHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLT-PKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~-~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
.++|+|||||||||||++|+++|++.| .+|++++|...... ....+ ... ....+++++.+|+
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~------------~~~--~~~~~~~~~~~Dl 67 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASG---EEVTVLDDLRVPPMIPPEGT------------GKF--LEKPVLELEERDL 67 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT---CCEEEECCCSSCCSSCCTTS------------SEE--ECSCGGGCCHHHH
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCC---CEEEEEecCCcccccchhhh------------hhh--ccCCCeeEEeCcc
Confidence 357899999999999999999999998 68999999765210 00000 000 0012344455554
Q ss_pred CCCcCCCCHHHHHHHhcCccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--
Q psy11859 295 LQANLGIKDSDLLMLQEEVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK-- 369 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~-- 369 (851)
+ ++|+|||+||..... ..+...++ |+.||.+|+++|++.+ +++|||+||+++|+...
T Consensus 68 ~----------------~~d~vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~-v~~~v~~SS~~v~~~~~~~ 129 (321)
T 3vps_A 68 S----------------DVRLVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVG-VPKVVVGSTCEVYGQADTL 129 (321)
T ss_dssp T----------------TEEEEEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHT-CCEEEEEEEGGGGCSCSSS
T ss_pred c----------------cCCEEEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcC-CCeEEEecCHHHhCCCCCC
Confidence 4 789999999988753 33445677 9999999999999986 99999999998887643
Q ss_pred ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CC-CEEEEecccccCCCCC
Q psy11859 370 VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KL-PVVIVRPSIVLPSFQE 446 (851)
Q Consensus 370 ~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l-~~~ivRp~~V~G~~~~ 446 (851)
+++|+.+..|.++ |+.||+.+|.++..++. ++ +++|+||++||||+..
T Consensus 130 ~~~E~~~~~p~~~-----------------------------Y~~sK~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~ 180 (321)
T 3vps_A 130 PTPEDSPLSPRSP-----------------------------YAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGER 180 (321)
T ss_dssp SBCTTSCCCCCSH-----------------------------HHHHHHHHHHHHHHHHHSSSSCEEEEEEECEEECTTCC
T ss_pred CCCCCCCCCCCCh-----------------------------hHHHHHHHHHHHHHHHHHcCCCceEEEEeccccCcCCC
Confidence 7888877666665 99999999999998864 88 9999999999999876
Q ss_pred C---chhHhhhhcCCceEE-EEccc---------CceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHHHHhhcC
Q psy11859 447 P---VPGWVDSLNGPVGVL-VASGK---------GVVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 447 p---~p~~i~~~~~~~~~~-~~~g~---------~v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
+ ++.++..+..+.++. .+.|. |+++++....+ ...+ +||++++ .++|+.|+++.+. .+|..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~g-~~~i~~~--~~~s~~e~~~~i~-~~g~~ 255 (321)
T 3vps_A 181 PDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPLPS-VVNFGSG--QSLSVNDVIRILQ-ATSPA 255 (321)
T ss_dssp TTSHHHHHHHHHHHHSEEEEETTSCCEECEEEHHHHHHHHHHGGGSCCCS-EEEESCS--CCEEHHHHHHHHH-TTCTT
T ss_pred CCChHHHHHHHHHcCCCeEEeCCCCceEceEEHHHHHHHHHHHHhcCCCC-eEEecCC--CcccHHHHHHHHH-HhCCC
Confidence 4 667777654444433 33333 23333322222 2345 9999998 6899999999999 87753
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-26 Score=250.06 Aligned_cols=233 Identities=22% Similarity=0.218 Sum_probs=170.3
Q ss_pred chhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEE
Q psy11859 211 DVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHII 290 (851)
Q Consensus 211 ~i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v 290 (851)
+....+++|+|||||||||||++|+++|++.| .+|++++|...... +. + .. ..+++++
T Consensus 14 ~~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~--~~------------l----~~-~~~~~~~ 71 (333)
T 2q1w_A 14 LVPRGSHMKKVFITGICGQIGSHIAELLLERG---DKVVGIDNFATGRR--EH------------L----KD-HPNLTFV 71 (333)
T ss_dssp -------CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCG--GG------------S----CC-CTTEEEE
T ss_pred eeeecCCCCEEEEeCCccHHHHHHHHHHHHCC---CEEEEEECCCccch--hh------------H----hh-cCCceEE
Confidence 44555788999999999999999999999998 78999999754320 00 0 00 1478999
Q ss_pred EcCCCCCcCCCCHHHHHHHhcC--ccEEEEccccCCcc--hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeC
Q psy11859 291 EGDILQANLGIKDSDLLMLQEE--VSVVFNGAASLKLE--AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHP 366 (851)
Q Consensus 291 ~gDi~~~~lgls~~~~~~~~~~--vd~ViH~AA~~~~~--~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~ 366 (851)
.+|++|++ ++..++++ +|+|||+||..... .++. +++|+.||.+|+++|.+.+ +++||++||+++++
T Consensus 72 ~~Dl~d~~------~~~~~~~~~~~D~vih~A~~~~~~~~~~~~--~~~N~~~~~~l~~a~~~~~-~~~iV~~SS~~~~g 142 (333)
T 2q1w_A 72 EGSIADHA------LVNQLIGDLQPDAVVHTAASYKDPDDWYND--TLTNCVGGSNVVQAAKKNN-VGRFVYFQTALCYG 142 (333)
T ss_dssp ECCTTCHH------HHHHHHHHHCCSEEEECCCCCSCTTCHHHH--HHHHTHHHHHHHHHHHHTT-CSEEEEEEEGGGGC
T ss_pred EEeCCCHH------HHHHHHhccCCcEEEECceecCCCccCChH--HHHHHHHHHHHHHHHHHhC-CCEEEEECcHHHhC
Confidence 99999876 78888877 99999999987652 3333 8999999999999999875 89999999998887
Q ss_pred ----CCc-ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHH-HhCCCCEEEEecccc
Q psy11859 367 ----DQK-VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDE-YKTKLPVVIVRPSIV 440 (851)
Q Consensus 367 ----~~~-~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~-~~~~l~~~ivRp~~V 440 (851)
... +++|+. .|. .+.|+.||+.+|.++.. +. +++++||++|
T Consensus 143 ~~~~~~~~~~~E~~--~p~----------------------------~~~Y~~sK~~~E~~~~~s~~---~~~ilR~~~v 189 (333)
T 2q1w_A 143 VKPIQQPVRLDHPR--NPA----------------------------NSSYAISKSANEDYLEYSGL---DFVTFRLANV 189 (333)
T ss_dssp SCCCSSSBCTTSCC--CCT----------------------------TCHHHHHHHHHHHHHHHHTC---CEEEEEESEE
T ss_pred CCcccCCCCcCCCC--CCC----------------------------CCchHHHHHHHHHHHHhhhC---CeEEEeeceE
Confidence 322 455544 333 13499999999999988 65 8999999999
Q ss_pred cCCCC--CCchhHhhhhcCCceEEEEcc---------cCceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHHHHhh
Q psy11859 441 LPSFQ--EPVPGWVDSLNGPVGVLVASG---------KGVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQLIY 509 (851)
Q Consensus 441 ~G~~~--~p~p~~i~~~~~~~~~~~~~g---------~~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~~~~ 509 (851)
|||+. ..++.++..+..+. .+++ + +|+++++....+...+++||++++ .++|+.|+++.+.+.+|
T Consensus 190 ~gp~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~i~v~Dva~ai~~~~~~~~g~~~~v~~~--~~~s~~e~~~~i~~~~g 265 (333)
T 2q1w_A 190 VGPRNVSGPLPIFFQRLSEGK-KCFV-TKARRDFVFVKDLARATVRAVDGVGHGAYHFSSG--TDVAIKELYDAVVEAMA 265 (333)
T ss_dssp ESTTCCSSHHHHHHHHHHTTC-CCEE-EECEECEEEHHHHHHHHHHHHTTCCCEEEECSCS--CCEEHHHHHHHHHHHTT
T ss_pred ECcCCcCcHHHHHHHHHHcCC-eeeC-CCceEeeEEHHHHHHHHHHHHhcCCCCEEEeCCC--CCccHHHHHHHHHHHhC
Confidence 99984 23677776643332 2233 3 233333332222222889999988 68999999999999988
Q ss_pred cC
Q psy11859 510 QY 511 (851)
Q Consensus 510 ~~ 511 (851)
..
T Consensus 266 ~~ 267 (333)
T 2q1w_A 266 LP 267 (333)
T ss_dssp CS
T ss_pred CC
Confidence 53
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.8e-26 Score=249.84 Aligned_cols=236 Identities=21% Similarity=0.248 Sum_probs=173.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
.++|+|||||||||||++|+++|++.| .+|++++|...+.. +.+.. + ....+++++.+|+.
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~--~~~~~---------~-----~~~~~~~~~~~D~~ 85 (343)
T 2b69_A 25 KDRKRILITGGAGFVGSHLTDKLMMDG---HEVTVVDNFFTGRK--RNVEH---------W-----IGHENFELINHDVV 85 (343)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCG--GGTGG---------G-----TTCTTEEEEECCTT
T ss_pred cCCCEEEEEcCccHHHHHHHHHHHHCC---CEEEEEeCCCccch--hhhhh---------h-----ccCCceEEEeCccC
Confidence 567899999999999999999999998 78999999754321 00000 0 01247899999999
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC--cc
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ--KV 370 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~--~~ 370 (851)
++. +.++|+|||+||..... .++...+++|+.||.+|+++|.+.+ + +|||+||+++++.. .+
T Consensus 86 ~~~-----------~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~v~~SS~~v~g~~~~~~ 152 (343)
T 2b69_A 86 EPL-----------YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG-A-RLLLASTSEVYGDPEVHP 152 (343)
T ss_dssp SCC-----------CCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHT-C-EEEEEEEGGGGBSCSSSS
T ss_pred Chh-----------hcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC-C-cEEEECcHHHhCCCCCCC
Confidence 875 35799999999987643 4567889999999999999999886 5 89999999888754 35
Q ss_pred cccccCC--CCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCC
Q psy11859 371 LEEKLYP--SPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 371 i~E~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~ 446 (851)
++|+.+. .|..+ .+.|+.||+.+|+++..++. +++++++||++||||+..
T Consensus 153 ~~E~~~~~~~~~~~--------------------------~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~ 206 (343)
T 2b69_A 153 QSEDYWGHVNPIGP--------------------------RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMH 206 (343)
T ss_dssp BCTTCCCBCCSSST--------------------------THHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCC
T ss_pred CcccccccCCCCCC--------------------------CCchHHHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcCCC
Confidence 6666321 12222 24599999999999988754 999999999999999754
Q ss_pred C-----chhHhhhh-cCCceEEEEccc---------CceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHHHHhhcC
Q psy11859 447 P-----VPGWVDSL-NGPVGVLVASGK---------GVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 447 p-----~p~~i~~~-~~~~~~~~~~g~---------~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
+ ++.|+..+ .+....+++.|. |+++++....+...+++||++++ .++|+.|+++.+.+.+|..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~~~~i~~~--~~~s~~e~~~~i~~~~g~~ 284 (343)
T 2b69_A 207 MNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNP--EEHTILEFAQLIKNLVGSG 284 (343)
T ss_dssp TTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSSCCSCEEESCC--CEEEHHHHHHHHHHHHTCC
T ss_pred CCcccHHHHHHHHHHcCCCceEcCCCCeEEeeEeHHHHHHHHHHHHhcCCCCeEEecCC--CCCcHHHHHHHHHHHhCCC
Confidence 2 45666653 444433444443 33333322222344689999998 6899999999999998863
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-26 Score=254.91 Aligned_cols=233 Identities=18% Similarity=0.230 Sum_probs=171.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+|||||||||||++|+++|++.|. ..|++++|...... . . ...++. +.+|++
T Consensus 44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~----~---------~--------~~~~~~-~~~d~~ 99 (357)
T 2x6t_A 44 IEGRMIIVTGGAGFIGSNIVKALNDKGI--TDILVVDNLKDGTK----F---------V--------NLVDLN-IADYMD 99 (357)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTC--CCEEEEECCSSGGG----G---------G--------GTTTSC-CSEEEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC--cEEEEEecCCCcch----h---------h--------cccCce-EeeecC
Confidence 4678999999999999999999999872 46888888754310 0 0 001223 678998
Q ss_pred CCcCCCCHHHHHHHhc-----CccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc
Q psy11859 296 QANLGIKDSDLLMLQE-----EVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK 369 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-----~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~ 369 (851)
+++ .+..+++ ++|+|||+||.... ..++.+.+++|+.||.+|+++|.+.+ + +||++||+.+++...
T Consensus 100 ~~~------~~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~-~-r~V~~SS~~v~g~~~ 171 (357)
T 2x6t_A 100 KED------FLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE-I-PFLYASSAATYGGRT 171 (357)
T ss_dssp HHH------HHHHHHTTCCCSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHT-C-CEEEEEEGGGGCSCS
T ss_pred cHH------HHHHHHhhcccCCCCEEEECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEcchHHhCCCC
Confidence 775 6777776 59999999998765 34677899999999999999999886 7 999999998887543
Q ss_pred --ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCC
Q psy11859 370 --VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 370 --~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~ 445 (851)
+++|+.+..|.++ |+.||+.+|.++..++. +++++++||++||||+.
T Consensus 172 ~~~~~E~~~~~p~~~-----------------------------Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~ 222 (357)
T 2x6t_A 172 SDFIESREYEKPLNV-----------------------------FGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPRE 222 (357)
T ss_dssp SCCCSSGGGCCCSSH-----------------------------HHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSC
T ss_pred CCCcCCcCCCCCCCh-----------------------------hHHHHHHHHHHHHHHHHHcCCCEEEEecCeEECCCC
Confidence 6778776666555 99999999999998865 89999999999999986
Q ss_pred C-------CchhHhhhhcCCce-EEEEcccC-ceeEEEe---------ecCCCCccEEEEeCCCCccccHHHHHHHHHHH
Q psy11859 446 E-------PVPGWVDSLNGPVG-VLVASGKG-VVRSMIL---------NDLSTETQVFNISSNEVEAITWGEIISRGKQL 507 (851)
Q Consensus 446 ~-------p~p~~i~~~~~~~~-~~~~~g~~-v~~~~~~---------~~~~~~~~iyni~~~~~~~~t~~el~~~~~~~ 507 (851)
. .++.++..+..+.+ .+++.|.. ....+.. ..+...+++||++++ .++|+.|+++.+.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~~~~~~i~~~--~~~s~~e~~~~i~~~ 300 (357)
T 2x6t_A 223 GHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVSGIFNLGTG--RAESFQAVADATLAY 300 (357)
T ss_dssp TTCGGGSCHHHHHHHHHHTTCCCEEETTGGGCEECEEEHHHHHHHHHHHHHHCCCEEEEESCS--CCEEHHHHHHHHHHH
T ss_pred CCCcccchHHHHHHHHHHcCCCcEEeCCCCcceEccEEHHHHHHHHHHHHhcCCCCeEEecCC--CcccHHHHHHHHHHH
Confidence 4 24556665443333 33333322 2222221 111122889999998 689999999999999
Q ss_pred hhcC
Q psy11859 508 IYQY 511 (851)
Q Consensus 508 ~~~~ 511 (851)
++..
T Consensus 301 ~g~~ 304 (357)
T 2x6t_A 301 HKKG 304 (357)
T ss_dssp HTCC
T ss_pred cCCC
Confidence 8864
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=249.66 Aligned_cols=218 Identities=17% Similarity=0.130 Sum_probs=166.5
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
.--..++|||||||||||++|+++|++.| .+|++++|. .+|
T Consensus 8 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~------------------------------------~~D 48 (292)
T 1vl0_A 8 HHHHHMKILITGANGQLGREIQKQLKGKN---VEVIPTDVQ------------------------------------DLD 48 (292)
T ss_dssp ----CEEEEEESTTSHHHHHHHHHHTTSS---EEEEEECTT------------------------------------TCC
T ss_pred cccccceEEEECCCChHHHHHHHHHHhCC---CeEEeccCc------------------------------------cCC
Confidence 33456899999999999999999999988 789999884 268
Q ss_pred CCCCcCCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC
Q psy11859 294 ILQANLGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ 368 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~ 368 (851)
++|++ ++..+++ ++|+|||+||....+ .++.+.+++|+.||.+++++|.+.+ + +|||+||+++++..
T Consensus 49 l~d~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~-~-~iv~~SS~~v~~~~ 120 (292)
T 1vl0_A 49 ITNVL------AVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVG-A-EIVQISTDYVFDGE 120 (292)
T ss_dssp TTCHH------HHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHT-C-EEEEEEEGGGSCSC
T ss_pred CCCHH------HHHHHHHhcCCCEEEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEechHHeECCC
Confidence 88775 7777777 799999999987653 4567889999999999999999886 6 99999999888764
Q ss_pred c--ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCC
Q psy11859 369 K--VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 369 ~--~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~ 446 (851)
. +++|+.+..|.++ |+.||+.+|.++..++ .+++++||++||||...
T Consensus 121 ~~~~~~E~~~~~~~~~-----------------------------Y~~sK~~~E~~~~~~~--~~~~~lR~~~v~G~~~~ 169 (292)
T 1vl0_A 121 AKEPITEFDEVNPQSA-----------------------------YGKTKLEGENFVKALN--PKYYIVRTAWLYGDGNN 169 (292)
T ss_dssp CSSCBCTTSCCCCCSH-----------------------------HHHHHHHHHHHHHHHC--SSEEEEEECSEESSSSC
T ss_pred CCCCCCCCCCCCCccH-----------------------------HHHHHHHHHHHHHhhC--CCeEEEeeeeeeCCCcC
Confidence 3 7788776666555 9999999999998875 47999999999999332
Q ss_pred CchhHhhhhcCCceEEEEc--------ccCceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHHHHhhcC
Q psy11859 447 PVPGWVDSLNGPVGVLVAS--------GKGVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 447 p~p~~i~~~~~~~~~~~~~--------g~~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
.++.++..+..+.++.+.. .+|+++++....+...+++||++++ .++|+.|+++.+.+.+|..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~~~~~i~~~--~~~s~~e~~~~i~~~~g~~ 240 (292)
T 1vl0_A 170 FVKTMINLGKTHDELKVVHDQVGTPTSTVDLARVVLKVIDEKNYGTFHCTCK--GICSWYDFAVEIFRLTGID 240 (292)
T ss_dssp HHHHHHHHHHHCSEEEEESSCEECCEEHHHHHHHHHHHHHHTCCEEEECCCB--SCEEHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHhcCCcEEeecCeeeCCccHHHHHHHHHHHHhcCCCcEEEecCC--CCccHHHHHHHHHHHhCCC
Confidence 3555555544333333221 1233333322222226789999998 6899999999999998853
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-26 Score=252.24 Aligned_cols=258 Identities=19% Similarity=0.175 Sum_probs=177.2
Q ss_pred hhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEE-
Q psy11859 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHII- 290 (851)
Q Consensus 212 i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v- 290 (851)
+..++++|+|||||||||||++|+++|++.| .+|++++|.... .+.+.+. +.... ..+++++
T Consensus 5 ~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~---~~~~~~~--------~~~~~---~~~~~~~~ 67 (342)
T 1y1p_A 5 NAVLPEGSLVLVTGANGFVASHVVEQLLEHG---YKVRGTARSASK---LANLQKR--------WDAKY---PGRFETAV 67 (342)
T ss_dssp TCSSCTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSHHH---HHHHHHH--------HHHHS---TTTEEEEE
T ss_pred cccCCCCCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeCCccc---HHHHHHH--------hhccC---CCceEEEE
Confidence 3456789999999999999999999999998 789999996421 1122111 11111 1478888
Q ss_pred EcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC--
Q psy11859 291 EGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ-- 368 (851)
Q Consensus 291 ~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~-- 368 (851)
.+|++|++ ++..+++++|+|||+||......++...+++|+.||.+++++|.+..++++||++||.++++..
T Consensus 68 ~~D~~d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~ 141 (342)
T 1y1p_A 68 VEDMLKQG------AYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKP 141 (342)
T ss_dssp CSCTTSTT------TTTTTTTTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCT
T ss_pred ecCCcChH------HHHHHHcCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCC
Confidence 89999987 6777788999999999988777778889999999999999999854458999999998887432
Q ss_pred ----cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCccc--CCCCchhhHHHHHHHHHHHHHhC----CCCEEEEecc
Q psy11859 369 ----KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKIL--GPHPNSYTFTKRLTETLVDEYKT----KLPVVIVRPS 438 (851)
Q Consensus 369 ----~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~n~Y~~SK~~aE~~v~~~~~----~l~~~ivRp~ 438 (851)
.+++|+.+... .. .....+... ....+.|+.||+.+|.++..+.. +++++++||+
T Consensus 142 ~~~~~~~~E~~~~~~----~~-----------~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~ 206 (342)
T 1y1p_A 142 NVEGIYLDEKSWNLE----SI-----------DKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPN 206 (342)
T ss_dssp TCCCCEECTTCCCHH----HH-----------HHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEES
T ss_pred CCCCcccCccccCch----hh-----------hhhccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCC
Confidence 35666542110 00 000000000 00125699999999999987753 7889999999
Q ss_pred cccCCCCCC------chhHhhhhcCCce---------EEEEcccCceeEEEeecC-C-CCccEEEEeCCCCccccHHHHH
Q psy11859 439 IVLPSFQEP------VPGWVDSLNGPVG---------VLVASGKGVVRSMILNDL-S-TETQVFNISSNEVEAITWGEII 501 (851)
Q Consensus 439 ~V~G~~~~p------~p~~i~~~~~~~~---------~~~~~g~~v~~~~~~~~~-~-~~~~iyni~~~~~~~~t~~el~ 501 (851)
+||||...+ ++.|+..+..+.+ .-+...+|+++++....+ . ..++.| +++| .++|+.|++
T Consensus 207 ~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~-~~~g--~~~s~~e~~ 283 (342)
T 1y1p_A 207 YTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSAVDIGLLHLGCLVLPQIERRRV-YGTA--GTFDWNTVL 283 (342)
T ss_dssp EEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHHTCCSEEEEEHHHHHHHHHHHHHCTTCCSCEE-EECC--EEECHHHHH
T ss_pred ceECCCCCCCCCCccHHHHHHHHHcCCCccccccCCcCCEeEHHHHHHHHHHHHcCcccCCceE-EEeC--CCCCHHHHH
Confidence 999998653 4556655432222 122233455554433222 2 234444 4556 579999999
Q ss_pred HHHHHHhhc
Q psy11859 502 SRGKQLIYQ 510 (851)
Q Consensus 502 ~~~~~~~~~ 510 (851)
+.+.+.++.
T Consensus 284 ~~i~~~~~~ 292 (342)
T 1y1p_A 284 ATFRKLYPS 292 (342)
T ss_dssp HHHHHHCTT
T ss_pred HHHHHHCCC
Confidence 999999875
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-26 Score=251.44 Aligned_cols=216 Identities=17% Similarity=0.163 Sum_probs=168.4
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|+ .| .+|++++|... ++.+|++|++
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g---~~V~~~~r~~~--------------------------------~~~~D~~d~~ 44 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PV---GNLIALDVHSK--------------------------------EFCGDFSNPK 44 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TT---SEEEEECTTCS--------------------------------SSCCCTTCHH
T ss_pred CeEEEECCCCHHHHHHHHHhh-cC---CeEEEeccccc--------------------------------cccccCCCHH
Confidence 589999999999999999999 77 78999998641 2478999876
Q ss_pred CCCCHHHHHHHhcC--ccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--cc
Q psy11859 299 LGIKDSDLLMLQEE--VSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--VL 371 (851)
Q Consensus 299 lgls~~~~~~~~~~--vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~i 371 (851)
++..++++ +|+|||+||..... .++.+.+++|+.||.+++++|++.+ + +|||+||+++++... ++
T Consensus 45 ------~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~v~~SS~~vy~~~~~~~~ 116 (299)
T 1n2s_A 45 ------GVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETG-A-WVVHYSTDYVFPGTGDIPW 116 (299)
T ss_dssp ------HHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTT-C-EEEEEEEGGGSCCCTTCCB
T ss_pred ------HHHHHHHhcCCCEEEECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcC-C-cEEEEecccEEeCCCCCCC
Confidence 77777775 99999999987653 4677889999999999999998876 5 799999998887653 67
Q ss_pred ccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCC-chh
Q psy11859 372 EEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEP-VPG 450 (851)
Q Consensus 372 ~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p-~p~ 450 (851)
+|+.+..|.++ |+.||+.+|+++..+.. +++++||++||||.+.. ++.
T Consensus 117 ~E~~~~~p~~~-----------------------------Y~~sK~~~E~~~~~~~~--~~~ilRp~~v~G~~~~~~~~~ 165 (299)
T 1n2s_A 117 QETDATSPLNV-----------------------------YGKTKLAGEKALQDNCP--KHLIFRTSWVYAGKGNNFAKT 165 (299)
T ss_dssp CTTSCCCCSSH-----------------------------HHHHHHHHHHHHHHHCS--SEEEEEECSEECSSSCCHHHH
T ss_pred CCCCCCCCccH-----------------------------HHHHHHHHHHHHHHhCC--CeEEEeeeeecCCCcCcHHHH
Confidence 78776666555 99999999999998863 99999999999998753 555
Q ss_pred HhhhhcCCceEEEEcc--------cCceeEEEeecCC---C--CccEEEEeCCCCccccHHHHHHHHHHHhhcC
Q psy11859 451 WVDSLNGPVGVLVASG--------KGVVRSMILNDLS---T--ETQVFNISSNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 451 ~i~~~~~~~~~~~~~g--------~~v~~~~~~~~~~---~--~~~iyni~~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
++..+..+.++.+... +|+++++....+. . .+++||++++ .++|+.|+++.+.+.+|..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~e~~~~i~~~~g~~ 237 (299)
T 1n2s_A 166 MLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVAG--GTTTWHDYAALVFDEARKA 237 (299)
T ss_dssp HHHHHHHCSEEEEECSCEECCEEHHHHHHHHHHHHHHHHHCGGGCEEEECCCB--SCEEHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEeecCcccCCeeHHHHHHHHHHHHHHhccccccCceEEEeCC--CCCCHHHHHHHHHHHhCCC
Confidence 6665544444433211 2333333222221 2 3789999998 6899999999999998864
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-26 Score=248.67 Aligned_cols=222 Identities=14% Similarity=0.167 Sum_probs=166.8
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++|+|||||||||||++|+++|++.| ..|+++.|.. .+|++|
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g---~~v~~~~r~~-----------------------------------~~D~~d 43 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRG---DVELVLRTRD-----------------------------------ELNLLD 43 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCT---TEEEECCCTT-----------------------------------TCCTTC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCC---CeEEEEecCc-----------------------------------cCCccC
Confidence 46899999999999999999999987 5788777641 268887
Q ss_pred CcCCCCHHHHHHHhc--CccEEEEccccCCc----chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC--
Q psy11859 297 ANLGIKDSDLLMLQE--EVSVVFNGAASLKL----EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ-- 368 (851)
Q Consensus 297 ~~lgls~~~~~~~~~--~vd~ViH~AA~~~~----~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~-- 368 (851)
++ ++..+++ ++|+|||+||.... ..++.+.+++|+.||.+|+++|.+.+ +++|||+||+++++..
T Consensus 44 ~~------~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~vyg~~~~ 116 (321)
T 1e6u_A 44 SR------AVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQND-VNKLLFLGSSCIYPKLAK 116 (321)
T ss_dssp HH------HHHHHHHHHCCSEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEECCGGGSCTTCC
T ss_pred HH------HHHHHHHhcCCCEEEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccHHHcCCCCC
Confidence 75 7888888 99999999998763 34567889999999999999999885 8999999999888754
Q ss_pred cccccccCCC-CCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCC
Q psy11859 369 KVLEEKLYPS-PVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 369 ~~i~E~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~ 445 (851)
.+++|+.+.. +..|. .+.|+.||+.+|+++..++. +++++|+||++||||+.
T Consensus 117 ~~~~E~~~~~~~~~p~-------------------------~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~ 171 (321)
T 1e6u_A 117 QPMAESELLQGTLEPT-------------------------NEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHD 171 (321)
T ss_dssp SSBCGGGTTSSCCCGG-------------------------GHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTC
T ss_pred CCcCccccccCCCCCC-------------------------CCccHHHHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCC
Confidence 3666765321 22220 13599999999999988754 89999999999999987
Q ss_pred CC-------chhHhhhhc-----CCceEE-EEcccCceeEEEe---------ecCCC----------CccEEEEeCCCCc
Q psy11859 446 EP-------VPGWVDSLN-----GPVGVL-VASGKGVVRSMIL---------NDLST----------ETQVFNISSNEVE 493 (851)
Q Consensus 446 ~p-------~p~~i~~~~-----~~~~~~-~~~g~~v~~~~~~---------~~~~~----------~~~iyni~~~~~~ 493 (851)
.+ ++.++..+. |..++. .+.|......++. ..+.. .+++||++++ .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~--~ 249 (321)
T 1e6u_A 172 NFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTG--V 249 (321)
T ss_dssp CCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCS--C
T ss_pred CCCCCCCccHHHHHHHHHHhhhcCCCceEEcCCCCEEEEeEEHHHHHHHHHHHHhCcccccccccccCCceEEeCCC--C
Confidence 52 456666542 213333 4434322222222 11121 2589999988 6
Q ss_pred cccHHHHHHHHHHHhhc
Q psy11859 494 AITWGEIISRGKQLIYQ 510 (851)
Q Consensus 494 ~~t~~el~~~~~~~~~~ 510 (851)
++|+.|+++.+.+.++.
T Consensus 250 ~~s~~e~~~~i~~~~g~ 266 (321)
T 1e6u_A 250 DCTIRELAQTIAKVVGY 266 (321)
T ss_dssp CEEHHHHHHHHHHHHTC
T ss_pred CccHHHHHHHHHHHhCC
Confidence 89999999999999885
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.3e-26 Score=253.75 Aligned_cols=242 Identities=17% Similarity=0.137 Sum_probs=174.2
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+|+|||||||||||++|+++|++.| .+|++++|...... .+++..+. ........+++++.+|++|+
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~Dl~d~ 67 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKG---YEVHGIKRRASSFN-TERVDHIY---------QDPHTCNPKFHLHYGDLSDT 67 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEECC-------------------------------CCEEECCCCSSCH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CEEEEEECCCcccc-hHHHHHHh---------hccccCCCceEEEECCCCCH
Confidence 4789999999999999999999998 78999999754311 11221111 00000124789999999987
Q ss_pred cCCCCHHHHHHHhcC--ccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCc---eEEEEeeeeeeeCCCc
Q psy11859 298 NLGIKDSDLLMLQEE--VSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKL---VAFIHFSTAFCHPDQK 369 (851)
Q Consensus 298 ~lgls~~~~~~~~~~--vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~---~~fV~vSTa~~~~~~~ 369 (851)
+ ++..++++ +|+|||+||..... +.+...+++|+.||.+++++|.+.+ + ++||++||+++++...
T Consensus 68 ~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~~iv~~SS~~v~g~~~ 140 (372)
T 1db3_A 68 S------NLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLG-LEKKTRFYQASTSELYGLVQ 140 (372)
T ss_dssp H------HHHHHHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTT-CTTTCEEEEEEEGGGGTTCC
T ss_pred H------HHHHHHHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhC-CCCCcEEEEeCChhhhCCCC
Confidence 6 77777764 79999999986543 4567789999999999999999875 6 7999999998887643
Q ss_pred --ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCC
Q psy11859 370 --VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 370 --~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~ 445 (851)
+++|+.+..|.++ |+.||+.+|.++..++. +++++++||+++|||+.
T Consensus 141 ~~~~~E~~~~~~~~~-----------------------------Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~ 191 (372)
T 1db3_A 141 EIPQKETTPFYPRSP-----------------------------YAVAKLYAYWITVNYRESYGMYACNGILFNHESPRR 191 (372)
T ss_dssp SSSBCTTSCCCCCSH-----------------------------HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTS
T ss_pred CCCCCccCCCCCCCh-----------------------------HHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCCC
Confidence 6777766666555 99999999999988765 89999999999999976
Q ss_pred CC------chhHhhhhc-CCc-eEEEEccc---------CceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHHHHh
Q psy11859 446 EP------VPGWVDSLN-GPV-GVLVASGK---------GVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQLI 508 (851)
Q Consensus 446 ~p------~p~~i~~~~-~~~-~~~~~~g~---------~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~~~ 508 (851)
.+ ++.++..+. +.. .+.++.+. |+++++....+...+++||++++ .++|+.|+++.+.+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~ni~~~--~~~s~~e~~~~i~~~~ 269 (372)
T 1db3_A 192 GETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFVIATG--VQYSVRQFVEMAAAQL 269 (372)
T ss_dssp CTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHHTTSSSSCCCEEECCC--CCEEHHHHHHHHHHTT
T ss_pred CCcchhhHHHHHHHHHHcCCCCceeecCCCceeeeeEHHHHHHHHHHHHhcCCCceEEEcCC--CceeHHHHHHHHHHHh
Confidence 43 344554433 332 23444443 23333333333334589999998 6899999999999998
Q ss_pred hc
Q psy11859 509 YQ 510 (851)
Q Consensus 509 ~~ 510 (851)
|.
T Consensus 270 g~ 271 (372)
T 1db3_A 270 GI 271 (372)
T ss_dssp TE
T ss_pred CC
Confidence 75
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-26 Score=251.43 Aligned_cols=220 Identities=18% Similarity=0.169 Sum_probs=146.1
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+|+|||||||||||++|+++|++.| .+|++++|.... ++ ++.+|++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~---------------------------~~--~~~~Dl~d~ 49 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNN---WHAVGCGFRRAR---------------------------PK--FEQVNLLDS 49 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTT---CEEEEEC---------------------------------------------
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC---CeEEEEccCCCC---------------------------CC--eEEecCCCH
Confidence 6899999999999999999999988 789999985421 02 678999988
Q ss_pred cCCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC-ccc
Q psy11859 298 NLGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ-KVL 371 (851)
Q Consensus 298 ~lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~-~~i 371 (851)
+ ++..+++ ++|+|||+||..... .++...+++|+.||.+|+++|.+.+ + +|||+||.++++.. .++
T Consensus 50 ~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~v~~SS~~v~~~~~~~~ 121 (315)
T 2ydy_A 50 N------AVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVG-A-FLIYISSDYVFDGTNPPY 121 (315)
T ss_dssp --------CHHHHHHHCCSEEEECC-------------------CHHHHHHHHHHHHHT-C-EEEEEEEGGGSCSSSCSB
T ss_pred H------HHHHHHHhhCCCEEEECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEchHHHcCCCCCCC
Confidence 6 6666666 499999999986543 4567889999999999999999886 5 99999999888763 367
Q ss_pred ccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCC----C
Q psy11859 372 EEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQE----P 447 (851)
Q Consensus 372 ~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~----p 447 (851)
+|+.+..|.++ |+.||+.+|.++..+ +++++++||++||||... .
T Consensus 122 ~E~~~~~~~~~-----------------------------Y~~sK~~~e~~~~~~--~~~~~~lR~~~v~G~~~~~~~~~ 170 (315)
T 2ydy_A 122 REEDIPAPLNL-----------------------------YGKTKLDGEKAVLEN--NLGAAVLRIPILYGEVEKLEESA 170 (315)
T ss_dssp CTTSCCCCCSH-----------------------------HHHHHHHHHHHHHHH--CTTCEEEEECSEECSCSSGGGST
T ss_pred CCCCCCCCcCH-----------------------------HHHHHHHHHHHHHHh--CCCeEEEeeeeeeCCCCcccccH
Confidence 77766666555 999999999999887 478899999999999875 2
Q ss_pred chhHhhhhc-CCceEEEEccc---------CceeEEEeecC-----CCCccEEEEeCCCCccccHHHHHHHHHHHhhcC
Q psy11859 448 VPGWVDSLN-GPVGVLVASGK---------GVVRSMILNDL-----STETQVFNISSNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 448 ~p~~i~~~~-~~~~~~~~~g~---------~v~~~~~~~~~-----~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
++.++..+. .+.++.+. +. |+++++....+ ...+++||++++ .++|+.|+++.+.+.+|..
T Consensus 171 ~~~~~~~~~~~~~~~~~~-~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~e~~~~i~~~~g~~ 246 (315)
T 2ydy_A 171 VTVMFDKVQFSNKSANMD-HWQQRFPTHVKDVATVCRQLAEKRMLDPSIKGTFHWSGN--EQMTKYEMACAIADAFNLP 246 (315)
T ss_dssp TGGGHHHHHCCSSCEEEE-CSSBBCCEEHHHHHHHHHHHHHHHHTCTTCCEEEECCCS--CCBCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCCeeec-cCceECcEEHHHHHHHHHHHHHhhccccCCCCeEEEcCC--CcccHHHHHHHHHHHhCCC
Confidence 445555554 33333322 22 33333322211 245789999998 6899999999999998864
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-26 Score=247.66 Aligned_cols=228 Identities=18% Similarity=0.222 Sum_probs=162.1
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcC
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANL 299 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~l 299 (851)
+|||||||||||++|+++|++.|. ..|++++|...... ...+ . ++. +.+|+++++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~-~~~~------------~--------~~~-~~~d~~~~~- 55 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGI--TDILVVDNLKDGTK-FVNL------------V--------DLN-IADYMDKED- 55 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTC--CCEEEEECCSSGGG-GHHH------------H--------TSC-CSEEEEHHH-
T ss_pred CEEEEcCccHHHHHHHHHHHHCCC--cEEEEEccCCCCch-hhhc------------C--------cce-eccccccHH-
Confidence 489999999999999999999873 46888888754311 1111 0 222 678998775
Q ss_pred CCCHHHHHHHhcC-----ccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--cc
Q psy11859 300 GIKDSDLLMLQEE-----VSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--VL 371 (851)
Q Consensus 300 gls~~~~~~~~~~-----vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~i 371 (851)
.+..++++ +|+|||+||.... ..++.+.+++|+.||.+|+++|.+.+ + +|||+||.++++... ++
T Consensus 56 -----~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~v~~SS~~v~g~~~~~~~ 128 (310)
T 1eq2_A 56 -----FLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE-I-PFLYASSAATYGGRTSDFI 128 (310)
T ss_dssp -----HHHHHHTTCCCSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHT-C-CEEEEEEGGGGTTCCSCBC
T ss_pred -----HHHHHHhccccCCCcEEEECcccccCcccCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEeeHHHhCCCCCCCC
Confidence 67777764 9999999998764 34677899999999999999999886 7 999999998887654 67
Q ss_pred ccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCC---
Q psy11859 372 EEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQE--- 446 (851)
Q Consensus 372 ~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~--- 446 (851)
+|+.+..|.++ |+.||+.+|.++..++. +++++++||++||||...
T Consensus 129 ~E~~~~~p~~~-----------------------------Y~~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~ 179 (310)
T 1eq2_A 129 ESREYEKPLNV-----------------------------YGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKG 179 (310)
T ss_dssp SSGGGCCCSSH-----------------------------HHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGG
T ss_pred CCCCCCCCCCh-----------------------------hHHHHHHHHHHHHHHHHHcCCCEEEEeCCcEECcCCCCCC
Confidence 78776666655 99999999999998865 899999999999999864
Q ss_pred ----CchhHhhhhcCCceE-EEEcccC-ceeEEEee---------cCCCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 447 ----PVPGWVDSLNGPVGV-LVASGKG-VVRSMILN---------DLSTETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 447 ----p~p~~i~~~~~~~~~-~~~~g~~-v~~~~~~~---------~~~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
.++.++..+..+.++ +.+.|.. ....++.. .+...+++||++++ .++|+.|+++.+.+.+|.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~Dva~~~~~~~~~~~~~~~~i~~~--~~~s~~e~~~~i~~~~g~ 256 (310)
T 1eq2_A 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVSGIFNLGTG--RAESFQAVADATLAYHKK 256 (310)
T ss_dssp GGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHCCCEEEEESCS--CCBCHHHHHHHC------
T ss_pred ccchHHHHHHHHHHcCCCcEEecCCCcceEccEEHHHHHHHHHHHHhcCCCCeEEEeCC--CccCHHHHHHHHHHHcCC
Confidence 245566554443332 3343332 22222221 11122889999998 689999999999998875
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-26 Score=253.19 Aligned_cols=246 Identities=19% Similarity=0.234 Sum_probs=165.0
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+|+|||||||||||++|+++|++.| ++|++++|..........+.. +. ...+++++.+|++|+
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G---~~V~~~~r~~~~~~~~~~~~~---------~~-----~~~~~~~~~~Dl~d~ 71 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKG---YAVNTTVRDPDNQKKVSHLLE---------LQ-----ELGDLKIFRADLTDE 71 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTT---CEEEEEESCTTCTTTTHHHHH---------HG-----GGSCEEEEECCTTTS
T ss_pred CCEEEEECCchHHHHHHHHHHHHCC---CEEEEEEcCcchhhhHHHHHh---------cC-----CCCcEEEEecCCCCh
Confidence 7899999999999999999999998 688888886543221111111 10 123788999999998
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCcc-hhH-HHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeee-eC-----CCc
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKLE-AEL-KENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFC-HP-----DQK 369 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~~-~~~-~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~-~~-----~~~ 369 (851)
+ ++..+++++|+|||+||...+. .++ .+.+++||.||.+|+++|.+.+++++|||+||+.+ ++ ...
T Consensus 72 ~------~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~ 145 (338)
T 2rh8_A 72 L------SFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGL 145 (338)
T ss_dssp S------SSHHHHTTCSEEEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCC
T ss_pred H------HHHHHHcCCCEEEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCc
Confidence 7 6778888999999999977543 233 34889999999999999998755899999999753 21 112
Q ss_pred ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC
Q psy11859 370 VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP 447 (851)
Q Consensus 370 ~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p 447 (851)
+++|+.+..+... .+ .....+.|+.||+++|.++..+.. +++++++||++||||...+
T Consensus 146 ~~~E~~~~~~~~~------------------~~--~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~ 205 (338)
T 2rh8_A 146 VVDEKNWTDIEFL------------------TS--AKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTS 205 (338)
T ss_dssp CCCTTTTTCC---------------------------CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSS
T ss_pred ccChhhccchhhc------------------cc--cCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCC
Confidence 5666643221100 00 000012599999999999988754 8999999999999998654
Q ss_pred -chhHhhh----hcCCce--------------EEEEcccCceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHHHH
Q psy11859 448 -VPGWVDS----LNGPVG--------------VLVASGKGVVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGKQL 507 (851)
Q Consensus 448 -~p~~i~~----~~~~~~--------------~~~~~g~~v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~~~ 507 (851)
++.++.. +.+... .-+...+|+++++....+ ...+++||++++ .+|+.|+++.+.+.
T Consensus 206 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~---~~s~~e~~~~l~~~ 282 (338)
T 2rh8_A 206 DVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDVCRAHIFVAEKESASGRYICCAA---NTSVPELAKFLSKR 282 (338)
T ss_dssp SCCHHHHHHHHHHHTCHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHCTTCCEEEEECSE---EECHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHcCCccccccccccccccCcccEEEHHHHHHHHHHHHcCCCcCCcEEEecC---CCCHHHHHHHHHHh
Confidence 3333221 122111 123344566655544332 233568987654 48999999999887
Q ss_pred hh
Q psy11859 508 IY 509 (851)
Q Consensus 508 ~~ 509 (851)
.+
T Consensus 283 ~~ 284 (338)
T 2rh8_A 283 YP 284 (338)
T ss_dssp CT
T ss_pred CC
Confidence 65
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.4e-26 Score=248.46 Aligned_cols=236 Identities=17% Similarity=0.206 Sum_probs=167.2
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCC-CHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGL-TPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~-~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
|+|||||||||||++|+++|++.| .+|++++|..... ...+.+... ...++.++.+|++++
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G---~~V~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~Dl~~~ 62 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNG---HDVIILDNLCNSKRSVLPVIERL---------------GGKHPTFVEGDIRNE 62 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCTTHHHHHHHH---------------HTSCCEEEECCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC---CEEEEEecCCCcchhHHHHHHhh---------------cCCcceEEEccCCCH
Confidence 579999999999999999999998 6888888754332 112222111 013678999999987
Q ss_pred cCCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC--cc
Q psy11859 298 NLGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ--KV 370 (851)
Q Consensus 298 ~lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~--~~ 370 (851)
+ ++..+++ ++|+|||+||..... +.+.+.+++|+.||.+++++|++.+ +++||++||+.+++.. .+
T Consensus 63 ~------~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~iv~~SS~~~~g~~~~~~ 135 (338)
T 1udb_A 63 A------LMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN-VKNFIFSSSATVYGDNPKIP 135 (338)
T ss_dssp H------HHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEEEGGGGCSCCSSS
T ss_pred H------HHHHHhhccCCCEEEECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEEccHHHhCCCCCCC
Confidence 6 6776665 599999999976543 3456789999999999999998875 8999999999888753 25
Q ss_pred cccccCCCC-CCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC---CCCEEEEecccccCCCCC
Q psy11859 371 LEEKLYPSP-VSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT---KLPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 371 i~E~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~---~l~~~ivRp~~V~G~~~~ 446 (851)
++|+.+..| . +.|+.||+.+|+++..++. +++++|+||++||||...
T Consensus 136 ~~e~~~~~~~~-----------------------------~~Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~ 186 (338)
T 1udb_A 136 YVESFPTGTPQ-----------------------------SPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPS 186 (338)
T ss_dssp BCTTSCCCCCS-----------------------------SHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTT
T ss_pred cCcccCCCCCC-----------------------------ChHHHHHHHHHHHHHHHHHhcCCCceEEEeeceecCCCcc
Confidence 666654433 3 3499999999999988753 799999999999998421
Q ss_pred ------C-------chhHhhhhcC-CceEE-EE------cc---------cCceeEEEeecC----CCCccEEEEeCCCC
Q psy11859 447 ------P-------VPGWVDSLNG-PVGVL-VA------SG---------KGVVRSMILNDL----STETQVFNISSNEV 492 (851)
Q Consensus 447 ------p-------~p~~i~~~~~-~~~~~-~~------~g---------~~v~~~~~~~~~----~~~~~iyni~~~~~ 492 (851)
+ ++.++....+ ...+. .+ .| +|+++++..+.+ ...+++||++++
T Consensus 187 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~yni~~~-- 264 (338)
T 1udb_A 187 GDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAG-- 264 (338)
T ss_dssp SSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTCCEEEEEEESCS--
T ss_pred cccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCCceeeeeEEHHHHHHHHHHHHhhhhccCCCcEEEecCC--
Confidence 1 2333333332 22222 22 12 222222222111 122479999988
Q ss_pred ccccHHHHHHHHHHHhhc
Q psy11859 493 EAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 493 ~~~t~~el~~~~~~~~~~ 510 (851)
.++|+.|+++.+.+..+.
T Consensus 265 ~~~s~~e~~~~i~~~~g~ 282 (338)
T 1udb_A 265 VGNSVLDVVNAFSKACGK 282 (338)
T ss_dssp CCEEHHHHHHHHHHHHTS
T ss_pred CceeHHHHHHHHHHHhCC
Confidence 689999999999999875
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-25 Score=243.03 Aligned_cols=237 Identities=14% Similarity=0.185 Sum_probs=174.6
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCC----ccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEE
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPD----IGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHII 290 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~----v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v 290 (851)
++++|+|||||||||||++|+++|++.|.. +.+|++++|....... ....+++++
T Consensus 11 ~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~---------------------~~~~~~~~~ 69 (342)
T 2hrz_A 11 YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA---------------------GFSGAVDAR 69 (342)
T ss_dssp CCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT---------------------TCCSEEEEE
T ss_pred CccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc---------------------ccCCceeEE
Confidence 367899999999999999999999998720 1478999997643210 012478899
Q ss_pred EcCCCCCcCCCCHHHHHHHh-cCccEEEEccccCCc--chhHHHHHHHHHHHHHHHHHHHHhcC----CceEEEEeeeee
Q psy11859 291 EGDILQANLGIKDSDLLMLQ-EEVSVVFNGAASLKL--EAELKENVAANTRGTQRLLDIALKMK----KLVAFIHFSTAF 363 (851)
Q Consensus 291 ~gDi~~~~lgls~~~~~~~~-~~vd~ViH~AA~~~~--~~~~~~~~~~Nv~Gt~~ll~~a~~~~----~~~~fV~vSTa~ 363 (851)
.+|++|++ ++..++ .++|+|||+||.... .+++...+++|+.||.+|+++|.+.+ .+++||++||+.
T Consensus 70 ~~Dl~d~~------~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~ 143 (342)
T 2hrz_A 70 AADLSAPG------EAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIA 143 (342)
T ss_dssp ECCTTSTT------HHHHHHHTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGG
T ss_pred EcCCCCHH------HHHHHHhcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchH
Confidence 99999987 777777 489999999997653 24567889999999999999998875 378999999998
Q ss_pred eeCCC--cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEeccc
Q psy11859 364 CHPDQ--KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSI 439 (851)
Q Consensus 364 ~~~~~--~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~ 439 (851)
+++.. .+++|+.++.|.++ |+.||+++|.++..++. +++.+++|+++
T Consensus 144 ~~~~~~~~~~~E~~~~~~~~~-----------------------------Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~ 194 (342)
T 2hrz_A 144 VFGAPLPYPIPDEFHTTPLTS-----------------------------YGTQKAICELLLSDYSRRGFFDGIGIRLPT 194 (342)
T ss_dssp GCCSSCCSSBCTTCCCCCSSH-----------------------------HHHHHHHHHHHHHHHHHTTSCEEEEEEECE
T ss_pred hhCCCCCCCcCCCCCCCCcch-----------------------------HHHHHHHHHHHHHHHHHhcCCCceeEEeee
Confidence 88764 46788776666555 99999999999988764 78999999999
Q ss_pred ccC-CCCC--C----chhHhhhhcCCceEEE-Ecc---------cCceeEEEeecCC-----CCccEEEEeCCCCccccH
Q psy11859 440 VLP-SFQE--P----VPGWVDSLNGPVGVLV-ASG---------KGVVRSMILNDLS-----TETQVFNISSNEVEAITW 497 (851)
Q Consensus 440 V~G-~~~~--p----~p~~i~~~~~~~~~~~-~~g---------~~v~~~~~~~~~~-----~~~~iyni~~~~~~~~t~ 497 (851)
||| |+.. + ++.++..+..+.+..+ +.+ +|+++++....+. ..+++||++ + .++|+
T Consensus 195 v~g~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~~~~~~~~~~~~~~~~~~~~ni~-g--~~~s~ 271 (342)
T 2hrz_A 195 ICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWHASPRSAVGFLIHGAMIDVEKVGPRRNLSMP-G--LSATV 271 (342)
T ss_dssp ETTCCSSCCCSGGGHHHHHHHHHHTTCCEEECSCTTCEEEEECHHHHHHHHHHHHHSCHHHHCSCCEEECC-C--EEEEH
T ss_pred EEecCCCCcchhHHHHHHHHHHHhcCCCeeccCCCccceeeEehHHHHHHHHHHHhccccccCCccEEEcC-C--CCCCH
Confidence 998 6542 1 3344444333333322 222 2222222221112 146799994 5 46999
Q ss_pred HHHHHHHHHHhhc
Q psy11859 498 GEIISRGKQLIYQ 510 (851)
Q Consensus 498 ~el~~~~~~~~~~ 510 (851)
.|+++.+.+.++.
T Consensus 272 ~e~~~~i~~~~g~ 284 (342)
T 2hrz_A 272 GEQIEALRKVAGE 284 (342)
T ss_dssp HHHHHHHHHHHCH
T ss_pred HHHHHHHHHHcCc
Confidence 9999999999875
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-25 Score=247.64 Aligned_cols=241 Identities=22% Similarity=0.182 Sum_probs=176.1
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcc-cCCCeEEEEcCCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPA-QLSRLHIIEGDILQA 297 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~-~~~~v~~v~gDi~~~ 297 (851)
|+|||||||||||++|+++|++.| .+|++++|...... .+++.. +...... ...+++++.+|++|+
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~-~~~~~~---------l~~~~~~~~~~~~~~~~~Dl~d~ 91 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKG---YEVHGIVRRSSSFN-TGRIEH---------LYKNPQAHIEGNMKLHYGDLTDS 91 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCCSSCC-CTTTGG---------GC---------CEEEEECCTTCH
T ss_pred cEEEEECCCchHHHHHHHHHHHCC---CEEEEEECCccccc-hhhHHH---------HhhhhccccCCCceEEEccCCCH
Confidence 689999999999999999999998 78999999764311 001110 1000000 124789999999987
Q ss_pred cCCCCHHHHHHHhcC--ccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCc---eEEEEeeeeeeeCCCc
Q psy11859 298 NLGIKDSDLLMLQEE--VSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKL---VAFIHFSTAFCHPDQK 369 (851)
Q Consensus 298 ~lgls~~~~~~~~~~--vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~---~~fV~vSTa~~~~~~~ 369 (851)
+ ++..++++ +|+|||+||..... +++...+++|+.||.+|+++|.+.+ + ++||++||+++++...
T Consensus 92 ~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~-~~~~~~iv~~SS~~~~~~~~ 164 (375)
T 1t2a_A 92 T------CLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCG-LINSVKFYQASTSELYGKVQ 164 (375)
T ss_dssp H------HHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CTTTCEEEEEEEGGGTCSCS
T ss_pred H------HHHHHHHhcCCCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhC-CCccceEEEecchhhhCCCC
Confidence 6 77777764 79999999987654 4567889999999999999999875 6 7999999998887543
Q ss_pred --ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCC
Q psy11859 370 --VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 370 --~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~ 445 (851)
+++|+.+..|.++ |+.||+.+|.++..++. +++++++||+++|||+.
T Consensus 165 ~~~~~E~~~~~~~~~-----------------------------Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~ 215 (375)
T 1t2a_A 165 EIPQKETTPFYPRSP-----------------------------YGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRR 215 (375)
T ss_dssp SSSBCTTSCCCCCSH-----------------------------HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTS
T ss_pred CCCCCccCCCCCCCh-----------------------------hHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCC
Confidence 6778766666555 99999999999988765 89999999999999976
Q ss_pred CC------chhHhhhh-cCCce-EEEEccc---------CceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHHHHh
Q psy11859 446 EP------VPGWVDSL-NGPVG-VLVASGK---------GVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQLI 508 (851)
Q Consensus 446 ~p------~p~~i~~~-~~~~~-~~~~~g~---------~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~~~ 508 (851)
.+ ++.++..+ .+..+ +.++.+. |+++++....+...+++||++++ .++|+.|+++.+.+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~ni~~~--~~~s~~e~~~~i~~~~ 293 (375)
T 1t2a_A 216 GANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFVIATG--EVHSVREFVEKSFLHI 293 (375)
T ss_dssp CTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHHHHHHHHHSSSCCCEEECCS--CCEEHHHHHHHHHHHT
T ss_pred CCCcchHHHHHHHHHHHcCCCceeEeCCCCceeeeEEHHHHHHHHHHHHhcCCCceEEEeCC--CcccHHHHHHHHHHHh
Confidence 43 23444443 34322 3444443 23333322222334589999998 6899999999999998
Q ss_pred hc
Q psy11859 509 YQ 510 (851)
Q Consensus 509 ~~ 510 (851)
|.
T Consensus 294 g~ 295 (375)
T 1t2a_A 294 GK 295 (375)
T ss_dssp TC
T ss_pred CC
Confidence 75
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=246.10 Aligned_cols=245 Identities=21% Similarity=0.270 Sum_probs=161.2
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEec-CCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCR-AKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R-~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
||+|||||||||||++|+++|++.| .+|++++| ..........+.+ .+....+++++.+|++|
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~Dl~d 64 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENG---YSVNTTIRADPERKRDVSFLTN-------------LPGASEKLHFFNADLSN 64 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT---CEEEEECCCC----CCCHHHHT-------------STTHHHHEEECCCCTTC
T ss_pred CCEEEEECChhHHHHHHHHHHHHCC---CEEEEEEeCCccchhHHHHHHh-------------hhccCCceEEEecCCCC
Confidence 6899999999999999999999998 68888888 4321110111110 00001257889999999
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcch-h-HHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeee-CCC---cc
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLEA-E-LKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCH-PDQ---KV 370 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~-~-~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~-~~~---~~ 370 (851)
++ ++..+++++|+|||+||.+.+.. + ..+.+++|+.||.+++++|.+.+++++|||+||+.++ +.. .+
T Consensus 65 ~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~ 138 (322)
T 2p4h_X 65 PD------SFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDV 138 (322)
T ss_dssp GG------GGHHHHTTCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSE
T ss_pred HH------HHHHHHcCCCEEEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCee
Confidence 87 78888899999999998764332 2 3458999999999999999887348999999998643 221 24
Q ss_pred cccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCC-c-hhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCC
Q psy11859 371 LEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHP-N-SYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 371 i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-n-~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~ 446 (851)
++|+.+..+ ++ .... .| + .|+.||+++|.++.++.. +++++++||++||||...
T Consensus 139 ~~e~~~~~~-~~--------------~~~~-------~p~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~ 196 (322)
T 2p4h_X 139 LDESDWSDV-DL--------------LRSV-------KPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVC 196 (322)
T ss_dssp ECTTCCCCH-HH--------------HHHH-------CCTTHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCS
T ss_pred cCCccccch-hh--------------hccc-------CcccccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCC
Confidence 555432110 00 0000 01 1 599999999999988753 899999999999999865
Q ss_pred C-chhHhhh----hcCCc------eEEEEcccCceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHHHHhh
Q psy11859 447 P-VPGWVDS----LNGPV------GVLVASGKGVVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGKQLIY 509 (851)
Q Consensus 447 p-~p~~i~~----~~~~~------~~~~~~g~~v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~~~~~ 509 (851)
+ ++.++.. +.+.. ..-+...+|+++++....+ ....+.|| +++ .++|+.|+++.+.+..+
T Consensus 197 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~g~~~-~~~--~~~s~~e~~~~i~~~~~ 268 (322)
T 2p4h_X 197 PKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLLENSVPGGRYN-CSP--FIVPIEEMSQLLSAKYP 268 (322)
T ss_dssp SSCCHHHHHHTHHHHSCGGGCCEEEEEEEEHHHHHHHHHHHHHSCCCCEEEE-CCC--EEEEHHHHHHHHHHHCT
T ss_pred CCCCchHHHHHHHHhCCCccCcCCCcCEEEHHHHHHHHHHHhhCcCCCCCEE-EcC--CCCCHHHHHHHHHHhCC
Confidence 3 3333321 22221 1123334555555443322 22234698 555 57999999999987654
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.9e-26 Score=248.65 Aligned_cols=248 Identities=16% Similarity=0.198 Sum_probs=166.7
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++++|||||||||||++|+++|++.| .+|++++|..... .++..+.+. +....+++++.+|++|
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~r~~~~~---~~~~~~~~~----------~~~~~~~~~~~~Dl~d 67 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERG---YTVRATVRDPTNV---KKVKHLLDL----------PKAETHLTLWKADLAD 67 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCTTCH---HHHHHHHTS----------TTHHHHEEEEECCTTS
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC---CEEEEEECCcchh---HHHHHHHhc----------ccCCCeEEEEEcCCCC
Confidence 57899999999999999999999998 6888888865431 112111110 0001268899999999
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcc--hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeee-eCCC---cc
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLE--AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFC-HPDQ---KV 370 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~--~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~-~~~~---~~ 370 (851)
++ ++..+++++|+|||+||...+. .+..+.+++|+.||.+|+++|.+.+.+++|||+||+.+ ++.. .+
T Consensus 68 ~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~ 141 (337)
T 2c29_D 68 EG------SFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPV 141 (337)
T ss_dssp TT------TTHHHHTTCSEEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSE
T ss_pred HH------HHHHHHcCCCEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcc
Confidence 87 7788889999999999976543 23346899999999999999998755899999999763 3321 24
Q ss_pred cccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC-
Q psy11859 371 LEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP- 447 (851)
Q Consensus 371 i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p- 447 (851)
++|+.+. +.+. .... ....+.|+.||+++|.++..+.. +++++++||++||||...+
T Consensus 142 ~~E~~~~-~~~~--------------~~~~-----~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~ 201 (337)
T 2c29_D 142 YDESCWS-DMEF--------------CRAK-----KMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSS 201 (337)
T ss_dssp ECTTCCC-CHHH--------------HHHH-----CCTTHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSS
T ss_pred cCcccCC-chhh--------------hccc-----CCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCC
Confidence 5555321 1110 0000 00124599999999999988753 8999999999999998653
Q ss_pred chhHhhh----hcCCc-------eEEEEcccCceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHHHHhh
Q psy11859 448 VPGWVDS----LNGPV-------GVLVASGKGVVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGKQLIY 509 (851)
Q Consensus 448 ~p~~i~~----~~~~~-------~~~~~~g~~v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~~~~~ 509 (851)
++..+.. +.+.. ..-+...+|+++++....+ ...+++|+++++ .+|+.|+++.+.+.++
T Consensus 202 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~---~~s~~e~~~~i~~~~~ 272 (337)
T 2c29_D 202 MPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIYLFENPKAEGRYICSSH---DCIILDLAKMLREKYP 272 (337)
T ss_dssp CCHHHHHHTHHHHTCGGGHHHHTEEEEEEHHHHHHHHHHHHHCTTCCEEEEECCE---EEEHHHHHHHHHHHCT
T ss_pred CCchHHHHHHHHcCCCccccccCCCCEEEHHHHHHHHHHHhcCcccCceEEEeCC---CCCHHHHHHHHHHHCC
Confidence 3333221 12211 1113344566655544332 233567876543 5899999999998764
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-25 Score=264.93 Aligned_cols=248 Identities=19% Similarity=0.193 Sum_probs=177.4
Q ss_pred hhhhcCCCEEEEecCccHHHHHHHHHHHHh-CCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEE
Q psy11859 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRS-CPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHII 290 (851)
Q Consensus 212 i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~-g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v 290 (851)
.....++|+|||||||||||++|+++|++. | .+|++++|...... . +. ...+++++
T Consensus 309 ~~~~~~~~~VLVTGatG~IG~~l~~~Ll~~~g---~~V~~~~r~~~~~~------~---------~~-----~~~~v~~v 365 (660)
T 1z7e_A 309 ACTARRRTRVLILGVNGFIGNHLTERLLREDH---YEVYGLDIGSDAIS------R---------FL-----NHPHFHFV 365 (660)
T ss_dssp -----CCEEEEEETTTSHHHHHHHHHHHHSSS---EEEEEEESCCTTTG------G---------GT-----TCTTEEEE
T ss_pred chhhccCceEEEEcCCcHHHHHHHHHHHhcCC---CEEEEEEcCchhhh------h---------hc-----cCCceEEE
Confidence 334467899999999999999999999997 5 78999999764421 0 00 12478999
Q ss_pred EcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCc---chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCC
Q psy11859 291 EGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKL---EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPD 367 (851)
Q Consensus 291 ~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~---~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~ 367 (851)
.+|+++++ +.+..+++++|+|||+||.... ..++.+.+++|+.||.+++++|.+.+ ++|||+||+++++.
T Consensus 366 ~~Dl~d~~-----~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~--~r~V~~SS~~vyg~ 438 (660)
T 1z7e_A 366 EGDISIHS-----EWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPSTSEVYGM 438 (660)
T ss_dssp ECCTTTCH-----HHHHHHHHHCSEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECCGGGGBT
T ss_pred ECCCCCcH-----HHHHHhhcCCCEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC--CEEEEEecHHHcCC
Confidence 99999874 2366677899999999998764 34567889999999999999999875 89999999988875
Q ss_pred Cc--ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCC
Q psy11859 368 QK--VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPS 443 (851)
Q Consensus 368 ~~--~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~ 443 (851)
.. +++|+.+..+..| .....+.|+.||+++|.++..++. +++++++||++||||
T Consensus 439 ~~~~~~~E~~~~~~~~p----------------------~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp 496 (660)
T 1z7e_A 439 CSDKYFDEDHSNLIVGP----------------------VNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGP 496 (660)
T ss_dssp CCSSSBCTTTCCEEECC----------------------TTCTTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEEST
T ss_pred CCCcccCCCccccccCc----------------------ccCCCCCcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCC
Confidence 43 5666653211111 001135699999999999988754 899999999999999
Q ss_pred CCCC-----------chhHhhhhcCCceE-EEEcccC---------ceeEEEeecCC----CCccEEEEeCCCCccccHH
Q psy11859 444 FQEP-----------VPGWVDSLNGPVGV-LVASGKG---------VVRSMILNDLS----TETQVFNISSNEVEAITWG 498 (851)
Q Consensus 444 ~~~p-----------~p~~i~~~~~~~~~-~~~~g~~---------v~~~~~~~~~~----~~~~iyni~~~~~~~~t~~ 498 (851)
...+ ++.++..+..+.++ +.+.|.. +++++....+. ..+++||+++++ +++|+.
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~~~~g~~~ni~~~~-~~~s~~ 575 (660)
T 1z7e_A 497 RLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPE-NEASIE 575 (660)
T ss_dssp TSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEEGGGCCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCGG-GEEEHH
T ss_pred CccccccccccccchHHHHHHHHHcCCCcEEeCCCCeEEEEEEHHHHHHHHHHHHhCccccCCCeEEEECCCC-CCcCHH
Confidence 8643 45566664333343 3343332 22222211111 257899999872 279999
Q ss_pred HHHHHHHHHhhcCC
Q psy11859 499 EIISRGKQLIYQYP 512 (851)
Q Consensus 499 el~~~~~~~~~~~p 512 (851)
|+++.+.+.+|..+
T Consensus 576 el~~~i~~~~g~~~ 589 (660)
T 1z7e_A 576 ELGEMLLASFEKHP 589 (660)
T ss_dssp HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999988643
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-25 Score=241.50 Aligned_cols=222 Identities=19% Similarity=0.167 Sum_probs=165.9
Q ss_pred EEEEecCccHHHHHHHHHHHHh--CCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRS--CPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~--g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+|||||||||||++|+++|++. + .+|++++|..... .++.++.+|++|+
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g---~~V~~~~r~~~~~--------------------------~~~~~~~~D~~d~ 51 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGK---KNVIASDIVQRDT--------------------------GGIKFITLDVSNR 51 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCG---GGEEEEESSCCCC--------------------------TTCCEEECCTTCH
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCC---CEEEEecCCCccc--------------------------cCceEEEecCCCH
Confidence 4899999999999999999998 5 6788898865431 1456889999987
Q ss_pred cCCCCHHHHHHHhc--CccEEEEccccCCc--chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC---cc
Q psy11859 298 NLGIKDSDLLMLQE--EVSVVFNGAASLKL--EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ---KV 370 (851)
Q Consensus 298 ~lgls~~~~~~~~~--~vd~ViH~AA~~~~--~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~---~~ 370 (851)
+ ++..+++ ++|+|||+||.... ..++...+++|+.||.+|+++|++.+ +++||++||+.+++.. .+
T Consensus 52 ~------~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~v~~SS~~~~~~~~~~~~ 124 (317)
T 3ajr_A 52 D------EIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHR-VEKVVIPSTIGVFGPETPKNK 124 (317)
T ss_dssp H------HHHHHHHHTTCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGCCTTSCSSS
T ss_pred H------HHHHHHhhcCCcEEEECCcccCCccccChHHHhhhhhHHHHHHHHHHHHcC-CCEEEEecCHHHhCCCCCCCC
Confidence 6 7777777 89999999997643 24567889999999999999999885 8999999999988764 24
Q ss_pred cccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC-
Q psy11859 371 LEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP- 447 (851)
Q Consensus 371 i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p- 447 (851)
++|+.+..|.++ |+.||+.+|.++..+.. +++++++||+++||+...|
T Consensus 125 ~~e~~~~~p~~~-----------------------------Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~ 175 (317)
T 3ajr_A 125 VPSITITRPRTM-----------------------------FGVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEPT 175 (317)
T ss_dssp BCSSSCCCCCSH-----------------------------HHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSSSCCC
T ss_pred ccccccCCCCch-----------------------------HHHHHHHHHHHHHHHHHhcCCeEEEEecCcEeccCCCCC
Confidence 666655555555 99999999999987754 8999999999999976432
Q ss_pred -------chhHhhhhcCCceEEEEcccCceeEEEee---------cCCC-----CccEEEEeCCCCccccHHHHHHHHHH
Q psy11859 448 -------VPGWVDSLNGPVGVLVASGKGVVRSMILN---------DLST-----ETQVFNISSNEVEAITWGEIISRGKQ 506 (851)
Q Consensus 448 -------~p~~i~~~~~~~~~~~~~g~~v~~~~~~~---------~~~~-----~~~iyni~~~~~~~~t~~el~~~~~~ 506 (851)
++.+...+.++....++.+......++.. .+.. .+++||+++ .++|+.|+++.+.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~g~~~~i~~---~~~s~~e~~~~i~~ 252 (317)
T 3ajr_A 176 AGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYEADRDKLVLRNGYNVTA---YTFTPSELYSKIKE 252 (317)
T ss_dssp SCSSTHHHHHHHHHHTTCCEEECSCTTCCEEEEEHHHHHHHHHHHHHCCGGGCSSCSCEECCS---EEECHHHHHHHHHT
T ss_pred CcchhHHHHHHHHHHhCCCceeecCccceeeeeEHHHHHHHHHHHHhCCccccccCceEecCC---ccccHHHHHHHHHH
Confidence 22233334444444444333322222211 1111 248999985 36999999999998
Q ss_pred Hhh
Q psy11859 507 LIY 509 (851)
Q Consensus 507 ~~~ 509 (851)
.++
T Consensus 253 ~~~ 255 (317)
T 3ajr_A 253 RIP 255 (317)
T ss_dssp TCC
T ss_pred HCC
Confidence 765
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.2e-25 Score=246.24 Aligned_cols=241 Identities=17% Similarity=0.106 Sum_probs=175.3
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCC-CeEEEEcCCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLS-RLHIIEGDILQA 297 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~-~v~~v~gDi~~~ 297 (851)
|+|||||||||||++|++.|++.| .+|++++|....... +++.. +......... +++++.+|++|+
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g---~~V~~~~r~~~~~~~-~~~~~---------~~~~~~~~~~~~~~~~~~Dl~d~ 95 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKG---YEVHGLIRRSSNFNT-QRINH---------IYIDPHNVNKALMKLHYADLTDA 95 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCCSSCCC-TTTTT---------TC--------CCEEEEECCTTCH
T ss_pred CeEEEEcCCchHHHHHHHHHHHCC---CEEEEEecCCccccc-hhhhh---------hhhccccccccceEEEECCCCCH
Confidence 689999999999999999999998 789999997643110 00100 0000000112 788999999987
Q ss_pred cCCCCHHHHHHHhcC--ccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCce-----EEEEeeeeeeeCC
Q psy11859 298 NLGIKDSDLLMLQEE--VSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLV-----AFIHFSTAFCHPD 367 (851)
Q Consensus 298 ~lgls~~~~~~~~~~--vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~-----~fV~vSTa~~~~~ 367 (851)
+ ++..++++ +|+|||+||..... .++...+++|+.||.+|+++|.+.+ ++ +||++||+++|+.
T Consensus 96 ~------~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~-~~~~~~~~~v~~SS~~vyg~ 168 (381)
T 1n7h_A 96 S------SLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHT-IDSGRTVKYYQAGSSEMFGS 168 (381)
T ss_dssp H------HHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHH-HHHCCCCEEEEEEEGGGGTT
T ss_pred H------HHHHHHHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhC-CccCCccEEEEeCcHHHhCC
Confidence 6 77777764 79999999987753 4567889999999999999999875 66 9999999988875
Q ss_pred Cc-ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCC
Q psy11859 368 QK-VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSF 444 (851)
Q Consensus 368 ~~-~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~ 444 (851)
.. +++|+.+..|.++ |+.||+.+|.++..++. +++++++||+++|||+
T Consensus 169 ~~~~~~E~~~~~~~~~-----------------------------Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~ 219 (381)
T 1n7h_A 169 TPPPQSETTPFHPRSP-----------------------------YAASKCAAHWYTVNYREAYGLFACNGILFNHESPR 219 (381)
T ss_dssp SCSSBCTTSCCCCCSH-----------------------------HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred CCCCCCCCCCCCCCCc-----------------------------hHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCC
Confidence 43 6777765555555 99999999999988765 8999999999999997
Q ss_pred CCC------chhHhhhh-cCCc-eEEEEccc---------CceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHHHH
Q psy11859 445 QEP------VPGWVDSL-NGPV-GVLVASGK---------GVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQL 507 (851)
Q Consensus 445 ~~p------~p~~i~~~-~~~~-~~~~~~g~---------~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~~ 507 (851)
..+ ++.++..+ .+.. .+.++.+. |+++++....+...+++||++++ .++|+.|+++.+.+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~~~~~~~i~~~--~~~s~~e~~~~i~~~ 297 (381)
T 1n7h_A 220 RGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKPDDYVVATE--EGHTVEEFLDVSFGY 297 (381)
T ss_dssp SCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHHHHHHHHHTSSSCCEEEECCS--CEEEHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHcCCCCeEEeCCCCceeeeEEHHHHHHHHHHHHhCCCCCeEEeeCC--CCCcHHHHHHHHHHH
Confidence 643 23344432 3332 23344333 33333332223344589999998 689999999999999
Q ss_pred hhc
Q psy11859 508 IYQ 510 (851)
Q Consensus 508 ~~~ 510 (851)
+|.
T Consensus 298 ~g~ 300 (381)
T 1n7h_A 298 LGL 300 (381)
T ss_dssp TTC
T ss_pred cCC
Confidence 875
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-25 Score=240.59 Aligned_cols=218 Identities=18% Similarity=0.068 Sum_probs=161.8
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|+++| ++|+++.|..... . +..|.
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G---~~V~~l~R~~~~~---------------------------~---~~~~~---- 43 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARG---HEVTLVSRKPGPG---------------------------R---ITWDE---- 43 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCCTT---------------------------E---EEHHH----
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCCCcC---------------------------e---eecch----
Confidence 789999999999999999999999 7899999964321 1 11221
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCc------c-hhHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEeeeeeeeCCCc-
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKL------E-AELKENVAANTRGTQRLLDIALKMK-KLVAFIHFSTAFCHPDQK- 369 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~------~-~~~~~~~~~Nv~Gt~~ll~~a~~~~-~~~~fV~vSTa~~~~~~~- 369 (851)
.....++++|+|||+|+..-. . ....+.+++|+.||.+|++++.+.+ ....||++||+++||+..
T Consensus 44 ------~~~~~l~~~d~vihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~ 117 (298)
T 4b4o_A 44 ------LAASGLPSCDAAVNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLT 117 (298)
T ss_dssp ------HHHHCCCSCSEEEECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSS
T ss_pred ------hhHhhccCCCEEEEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCC
Confidence 223345789999999984311 1 2335678999999999999998876 355699999999888654
Q ss_pred -ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCc
Q psy11859 370 -VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPV 448 (851)
Q Consensus 370 -~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~ 448 (851)
+++|+.+..|.+. |+.+|..+|........+++++++||++||||.+..+
T Consensus 118 ~~~~E~~p~~~~~~-----------------------------~~~~~~~~e~~~~~~~~~~~~~~~r~~~v~g~~~~~~ 168 (298)
T 4b4o_A 118 AEYDEDSPGGDFDF-----------------------------FSNLVTKWEAAARLPGDSTRQVVVRSGVVLGRGGGAM 168 (298)
T ss_dssp CCBCTTCCCSCSSH-----------------------------HHHHHHHHHHHHCCSSSSSEEEEEEECEEECTTSHHH
T ss_pred CcccccCCccccch-----------------------------hHHHHHHHHHHHHhhccCCceeeeeeeeEEcCCCCch
Confidence 6788776666665 8888888887654444489999999999999987666
Q ss_pred hhHhhhhcCCceEEEEcccC---------ceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 449 PGWVDSLNGPVGVLVASGKG---------VVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 449 p~~i~~~~~~~~~~~~~g~~---------v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
+.+......+.+..++.|.. +++++....+ +...++||++++ +|+|+.|+++.+.+.+++
T Consensus 169 ~~~~~~~~~~~~~~~g~g~~~~~~ihv~Dva~a~~~~~~~~~~~g~yn~~~~--~~~t~~e~~~~ia~~lgr 238 (298)
T 4b4o_A 169 GHMLLPFRLGLGGPIGSGHQFFPWIHIGDLAGILTHALEANHVHGVLNGVAP--SSATNAEFAQTFGAALGR 238 (298)
T ss_dssp HHHHHHHHTTCCCCBTTSCSBCCEEEHHHHHHHHHHHHHCTTCCEEEEESCS--CCCBHHHHHHHHHHHHTC
T ss_pred hHHHHHHhcCCcceecccCceeecCcHHHHHHHHHHHHhCCCCCCeEEEECC--CccCHHHHHHHHHHHhCc
Confidence 66666554444445555543 3333332222 445679999998 799999999999999986
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=234.10 Aligned_cols=213 Identities=13% Similarity=0.057 Sum_probs=161.7
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
.|+|||||| ||||++|+++|++.| .+|++++|.... ...+. ..+++++.+|++|.
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g---~~V~~~~r~~~~---~~~~~------------------~~~~~~~~~D~~d~ 59 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQG---WRIIGTSRNPDQ---MEAIR------------------ASGAEPLLWPGEEP 59 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGT---CEEEEEESCGGG---HHHHH------------------HTTEEEEESSSSCC
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCC---CEEEEEEcChhh---hhhHh------------------hCCCeEEEeccccc
Confidence 379999998 999999999999998 789999997543 11111 13789999999983
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEeeeeeeeCCCc--ccccc
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKM-KKLVAFIHFSTAFCHPDQK--VLEEK 374 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~vSTa~~~~~~~--~i~E~ 374 (851)
+ ++++|+|||+||......+ .+.+++++|++. .++++|||+||+++|+... +++|+
T Consensus 60 ~-----------~~~~d~vi~~a~~~~~~~~----------~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~ 118 (286)
T 3ius_A 60 S-----------LDGVTHLLISTAPDSGGDP----------VLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWVDET 118 (286)
T ss_dssp C-----------CTTCCEEEECCCCBTTBCH----------HHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCEECTT
T ss_pred c-----------cCCCCEEEECCCccccccH----------HHHHHHHHHHhhcCCceEEEEeecceecCCCCCCCcCCC
Confidence 2 5789999999998765432 357899999884 3589999999998887654 68888
Q ss_pred cCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhHhhh
Q psy11859 375 LYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDS 454 (851)
Q Consensus 375 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~i~~ 454 (851)
.+..|.++ |+.||+.+|+++..+ .+++++|+||++||||++.++. .
T Consensus 119 ~~~~p~~~-----------------------------Y~~sK~~~E~~~~~~-~~~~~~ilRp~~v~G~~~~~~~----~ 164 (286)
T 3ius_A 119 TPLTPTAA-----------------------------RGRWRVMAEQQWQAV-PNLPLHVFRLAGIYGPGRGPFS----K 164 (286)
T ss_dssp SCCCCCSH-----------------------------HHHHHHHHHHHHHHS-TTCCEEEEEECEEEBTTBSSST----T
T ss_pred CCCCCCCH-----------------------------HHHHHHHHHHHHHhh-cCCCEEEEeccceECCCchHHH----H
Confidence 87777766 999999999999988 6899999999999999876643 3
Q ss_pred hcCCceEEEEcccC---------ceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHHHHhhcCC
Q psy11859 455 LNGPVGVLVASGKG---------VVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGKQLIYQYP 512 (851)
Q Consensus 455 ~~~~~~~~~~~g~~---------v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~p 512 (851)
+..+....+..+.. +++++....+ ...+++||++++ .++|+.|+++.+.+.+|..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~g~~~~i~~~--~~~s~~e~~~~i~~~~g~~~ 230 (286)
T 3ius_A 165 LGKGGIRRIIKPGQVFSRIHVEDIAQVLAASMARPDPGAVYNVCDD--EPVPPQDVIAYAAELQGLPL 230 (286)
T ss_dssp SSSSCCCEEECTTCCBCEEEHHHHHHHHHHHHHSCCTTCEEEECCS--CCBCHHHHHHHHHHHHTCCC
T ss_pred HhcCCccccCCCCcccceEEHHHHHHHHHHHHhCCCCCCEEEEeCC--CCccHHHHHHHHHHHcCCCC
Confidence 33333333333322 2222222111 346789999998 68999999999999998643
|
| >2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.8e-27 Score=235.18 Aligned_cols=159 Identities=23% Similarity=0.366 Sum_probs=116.5
Q ss_pred CCCCCCCCceeeeeccceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCc
Q psy11859 675 PNGQIRSNRFWHYFFVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDW 754 (851)
Q Consensus 675 ~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~ 754 (851)
..+.|..|+..|.+.++|.|..|++.|.+...|..|++.|.++++|+| +.|++.|.....|..|+++|.++++|.|+
T Consensus 5 ~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~- 81 (190)
T 2i13_A 5 GSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKC--PECGKSFSDKKDLTRHQRTHTGEKPYKCP- 81 (190)
T ss_dssp --------------------------CCSSHHHHHGGGCC---CCEEC--TTTCCEESSHHHHHHHHHHHHCCCCEECT-
T ss_pred hhccchhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccC--CCcCchhCCHHHHHHHHHhcCCCCCccCc-
Confidence 356788899999999999999999999999999999999999999999 88999999999999999999999999998
Q ss_pred cccCccccCchhHHHhhhhcCCCCCccCCCCCCccccccccCCcc-----------cccCcccccccccCCCCCCccChH
Q psy11859 755 QDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLLAILNCPHE-----------AECTPTFKHRAEKTSTPGPSMCKR 823 (851)
Q Consensus 755 ~~C~k~F~~~~~L~~H~r~H~gekp~~C~~Cgk~f~~~~~~~~H~-----------~~C~k~f~~~~~~~~~~~pf~Ck~ 823 (851)
.|++.|.+...|..|++.|++++||.|+.|++.|.....+..|. ..|++.|.. +.
T Consensus 82 -~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~ 147 (190)
T 2i13_A 82 -ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSR-------------ED 147 (190)
T ss_dssp -TTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESC-------------HH
T ss_pred -ccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCC-------------HH
Confidence 89999999999999999999999999999999997765554443 346666665 45
Q ss_pred HHHHHHHhhcCCcchhhhhhHHhhhcC
Q psy11859 824 HLAKHLKVHERQKYKMMMKSMRKMKNK 850 (851)
Q Consensus 824 ~L~~H~r~Htgek~~~C~~c~~~f~~k 850 (851)
.|..|+++|++++||.|..||+.|+++
T Consensus 148 ~L~~H~~~H~~~~~~~C~~C~~~f~~~ 174 (190)
T 2i13_A 148 NLHTHQRTHTGEKPYKCPECGKSFSRR 174 (190)
T ss_dssp HHHHHHHHHHCCCCEECTTTCCEESSH
T ss_pred HHHHHHHhcCCCCCeECCCCCCccCCH
Confidence 999999999999999999999999864
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-25 Score=246.77 Aligned_cols=230 Identities=18% Similarity=0.152 Sum_probs=169.9
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCC--CccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCP--DIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~--~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+|+|||||||||||++|+++|++.|+ .+.+|++++|...... ....+++++.+|++
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~----------------------~~~~~~~~~~~Dl~ 58 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW----------------------HEDNPINYVQCDIS 58 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC----------------------CCSSCCEEEECCTT
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc----------------------cccCceEEEEeecC
Confidence 57999999999999999999999862 2358999999865421 01237889999999
Q ss_pred CCcCCCCHHHHHHHhcC---ccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcC-CceEEE-------Eeeeeee
Q psy11859 296 QANLGIKDSDLLMLQEE---VSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMK-KLVAFI-------HFSTAFC 364 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~---vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~-~~~~fV-------~vSTa~~ 364 (851)
|++ ++..++++ +|+|||+||... .++.+.+++|+.||.+++++|++.+ ++++|| |+||+.+
T Consensus 59 d~~------~~~~~~~~~~~~d~vih~a~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~v 130 (364)
T 2v6g_A 59 DPD------DSQAKLSPLTDVTHVFYVTWANR--STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFES 130 (364)
T ss_dssp SHH------HHHHHHTTCTTCCEEEECCCCCC--SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGG
T ss_pred CHH------HHHHHHhcCCCCCEEEECCCCCc--chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhh
Confidence 876 78888887 999999999864 4567889999999999999998862 489998 8999988
Q ss_pred eCCC----cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--C-CCEEEEec
Q psy11859 365 HPDQ----KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--K-LPVVIVRP 437 (851)
Q Consensus 365 ~~~~----~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~-l~~~ivRp 437 (851)
||.. .+++|+.+..|. ++.| +.+|+++.++.. + ++++|+||
T Consensus 131 yg~~~~~~~~~~E~~~~~~~----------------------------~~~y----~~~E~~~~~~~~~~~~~~~~ilRp 178 (364)
T 2v6g_A 131 YGKIESHDPPYTEDLPRLKY----------------------------MNFY----YDLEDIMLEEVEKKEGLTWSVHRP 178 (364)
T ss_dssp TTTSCCCCSSBCTTSCCCSS----------------------------CCHH----HHHHHHHHHHHTTSTTCEEEEEEE
T ss_pred ccccccCCCCCCccccCCcc----------------------------chhh----HHHHHHHHHHhhcCCCceEEEECC
Confidence 8764 366676544331 2447 458999988764 5 99999999
Q ss_pred ccccCCCCCCc-----hh-Hhhhh---cCCceEEEEcc------------cCceeEEEeecCC--CCccEEEEeCCCCcc
Q psy11859 438 SIVLPSFQEPV-----PG-WVDSL---NGPVGVLVASG------------KGVVRSMILNDLS--TETQVFNISSNEVEA 494 (851)
Q Consensus 438 ~~V~G~~~~p~-----p~-~i~~~---~~~~~~~~~~g------------~~v~~~~~~~~~~--~~~~iyni~~~~~~~ 494 (851)
++||||+..+. +. +...+ .+....+.+.| +|+++++....+. ..+++||++++ .+
T Consensus 179 ~~v~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~v~Dva~a~~~~~~~~~~~g~~~ni~~~--~~ 256 (364)
T 2v6g_A 179 GNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWAAVDPYAKNEAFNVSNG--DV 256 (364)
T ss_dssp SSEECCCTTCSSCHHHHHHHHHHHHHHHTCCBCCCSCHHHHHSCBCCEEHHHHHHHHHHHHHCGGGTTEEEEECCS--CC
T ss_pred CceeCCCCCcccchHHHHHHHHHHHHhcCCceecCCCcccccccCCCCcHHHHHHHHHHHHhCCCCCCceEEecCC--Cc
Confidence 99999987542 22 23333 23322223433 2233333322222 25779999998 67
Q ss_pred ccHHHHHHHHHHHhhcC
Q psy11859 495 ITWGEIISRGKQLIYQY 511 (851)
Q Consensus 495 ~t~~el~~~~~~~~~~~ 511 (851)
+|+.|+++.+.+.+|..
T Consensus 257 ~s~~e~~~~i~~~~g~~ 273 (364)
T 2v6g_A 257 FKWKHFWKVLAEQFGVE 273 (364)
T ss_dssp BCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHhCCC
Confidence 99999999999999864
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-25 Score=232.47 Aligned_cols=213 Identities=14% Similarity=0.084 Sum_probs=150.4
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|++.| .+|++++|...... ....+++++.+|++|++
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~----------------------~~~~~~~~~~~Dl~d~~ 59 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRG---FEVTAVVRHPEKIK----------------------IENEHLKVKKADVSSLD 59 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTT---CEEEEECSCGGGCC----------------------CCCTTEEEECCCTTCHH
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC---CEEEEEEcCcccch----------------------hccCceEEEEecCCCHH
Confidence 789999999999999999999998 79999999754321 11258999999999876
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC-cccccccCC
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ-KVLEEKLYP 377 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~-~~i~E~~~~ 377 (851)
++..+++++|+|||+|+... ...+.+++|+.|+.+++++|++.+ +++||++||+.++... ....|+.+.
T Consensus 60 ------~~~~~~~~~d~vi~~a~~~~---~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~Ss~~~~~~~~~~~~~~~~~ 129 (227)
T 3dhn_A 60 ------EVCEVCKGADAVISAFNPGW---NNPDIYDETIKVYLTIIDGVKKAG-VNRFLMVGGAGSLFIAPGLRLMDSGE 129 (227)
T ss_dssp ------HHHHHHTTCSEEEECCCC---------CCSHHHHHHHHHHHHHHHTT-CSEEEEECCSTTSEEETTEEGGGTTC
T ss_pred ------HHHHHhcCCCEEEEeCcCCC---CChhHHHHHHHHHHHHHHHHHHhC-CCEEEEeCChhhccCCCCCccccCCc
Confidence 88999999999999998652 122378899999999999999985 8999999997654322 233344444
Q ss_pred CCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh-C-CCCEEEEecccccCCCCCCchhHhhh-
Q psy11859 378 SPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK-T-KLPVVIVRPSIVLPSFQEPVPGWVDS- 454 (851)
Q Consensus 378 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~-~-~l~~~ivRp~~V~G~~~~p~p~~i~~- 454 (851)
.|.+ .|+.||+.+|.++..+. . +++++++||++||||....-. +...
T Consensus 130 ~p~~-----------------------------~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~-~~~~~ 179 (227)
T 3dhn_A 130 VPEN-----------------------------ILPGVKALGEFYLNFLMKEKEIDWVFFSPAADMRPGVRTGR-YRLGK 179 (227)
T ss_dssp SCGG-----------------------------GHHHHHHHHHHHHHTGGGCCSSEEEEEECCSEEESCCCCCC-CEEES
T ss_pred chHH-----------------------------HHHHHHHHHHHHHHHHhhccCccEEEEeCCcccCCCccccc-eeecC
Confidence 4443 49999999999998887 3 999999999999999764310 1000
Q ss_pred ---hcCCceEEEEcccCceeEEEeecC--CCCccEEEEeCCCCccccHH
Q psy11859 455 ---LNGPVGVLVASGKGVVRSMILNDL--STETQVFNISSNEVEAITWG 498 (851)
Q Consensus 455 ---~~~~~~~~~~~g~~v~~~~~~~~~--~~~~~iyni~~~~~~~~t~~ 498 (851)
+..+.+..+...+|+++++....+ ...+++|+++++ .|.+|.
T Consensus 180 ~~~~~~~~~~~~i~~~Dva~ai~~~l~~~~~~g~~~~~~~~--~~~~~~ 226 (227)
T 3dhn_A 180 DDMIVDIVGNSHISVEDYAAAMIDELEHPKHHQERFTIGYL--EHHHHH 226 (227)
T ss_dssp SBCCCCTTSCCEEEHHHHHHHHHHHHHSCCCCSEEEEEECC--SCCC--
T ss_pred CCcccCCCCCcEEeHHHHHHHHHHHHhCccccCcEEEEEee--hhcccC
Confidence 000111112222344444443322 346889999988 566664
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=261.05 Aligned_cols=242 Identities=18% Similarity=0.167 Sum_probs=172.8
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCH-HHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTP-KARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~-~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
..+++|+|||||||||||++|+++|++.| .+|++++|....... .+++..+ ...+++++.+
T Consensus 7 ~~~~~~~ilVTGatG~IG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~l~~~---------------~~~~v~~v~~ 68 (699)
T 1z45_A 7 SESTSKIVLVTGGAGYIGSHTVVELIENG---YDCVVADNLSNSTYDSVARLEVL---------------TKHHIPFYEV 68 (699)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCTHHHHHHHHH---------------HTSCCCEEEC
T ss_pred cccCCCEEEEECCCCHHHHHHHHHHHHCc---CEEEEEECCCcchHHHHHHHhhc---------------cCCceEEEEc
Confidence 34578999999999999999999999998 789999987654321 1122111 0136889999
Q ss_pred CCCCCcCCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCC
Q psy11859 293 DILQANLGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPD 367 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~ 367 (851)
|+++++ ++..+++ ++|+|||+||..... ..+.+.+++|+.||.+|+++|++.+ +++||++||+++++.
T Consensus 69 Dl~d~~------~l~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~-~~~iV~~SS~~vyg~ 141 (699)
T 1z45_A 69 DLCDRK------GLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYN-VSKFVFSSSATVYGD 141 (699)
T ss_dssp CTTCHH------HHHHHHHHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEEEGGGGCC
T ss_pred CCCCHH------HHHHHHHhCCCCEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEECcHHHhCC
Confidence 999876 7777777 899999999987643 3456789999999999999998885 899999999988875
Q ss_pred C------cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----CCCCEEEEec
Q psy11859 368 Q------KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----TKLPVVIVRP 437 (851)
Q Consensus 368 ~------~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~~l~~~ivRp 437 (851)
. .++.|+.+..|.++ |+.||+++|+++..++ .+++++|+||
T Consensus 142 ~~~~~~~~~~~E~~~~~p~~~-----------------------------Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~ 192 (699)
T 1z45_A 142 ATRFPNMIPIPEECPLGPTNP-----------------------------YGHTKYAIENILNDLYNSDKKSWKFAILRY 192 (699)
T ss_dssp GGGSTTCCSBCTTSCCCCCSH-----------------------------HHHHHHHHHHHHHHHHHHSTTSCEEEEEEE
T ss_pred CccccccCCccccCCCCCCCh-----------------------------HHHHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence 3 24566655444444 9999999999998764 4899999999
Q ss_pred ccccCCCCCC-------------chhHhhhhcCC-ceE-EEE------ccc---------CceeEEEeecC--------C
Q psy11859 438 SIVLPSFQEP-------------VPGWVDSLNGP-VGV-LVA------SGK---------GVVRSMILNDL--------S 479 (851)
Q Consensus 438 ~~V~G~~~~p-------------~p~~i~~~~~~-~~~-~~~------~g~---------~v~~~~~~~~~--------~ 479 (851)
++||||.... ++.+.....+. .++ +++ .|. |+++++..+.+ .
T Consensus 193 ~~vyG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~a~~~~~~~~~~~ 272 (699)
T 1z45_A 193 FNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENE 272 (699)
T ss_dssp CEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSCEECEEEHHHHHHHHHHHHHHHHHSCTTC
T ss_pred ccccCCCcccccccccccchhHHHHHHHHHHhcCCCceEEeCCcccCCCCCeeEeeEEHHHHHHHHHHHHhhhhcccccc
Confidence 9999985321 23233323321 122 222 232 33333222211 1
Q ss_pred CCccEEEEeCCCCccccHHHHHHHHHHHhhcC
Q psy11859 480 TETQVFNISSNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 480 ~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
..+++||++++ .++|+.|+++.+.+.++..
T Consensus 273 ~~~~~yni~~~--~~~s~~el~~~i~~~~g~~ 302 (699)
T 1z45_A 273 GLCREWNLGSG--KGSTVFEVYHAFCKASGID 302 (699)
T ss_dssp CEEEEEEESCS--CCEEHHHHHHHHHHHHTCC
T ss_pred CCceEEEECCC--CCCcHHHHHHHHHHHhCCC
Confidence 23579999998 6899999999999998863
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.6e-25 Score=254.96 Aligned_cols=221 Identities=14% Similarity=0.080 Sum_probs=162.8
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+|+|||||||||||++|++.|++.| .+|++++|..... ..+.+|+.+.
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G---~~V~~l~R~~~~~-----------------------------~~v~~d~~~~ 194 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGG---HEVIQLVRKEPKP-----------------------------GKRFWDPLNP 194 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESSSCCT-----------------------------TCEECCTTSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCCCCc-----------------------------cceeecccch
Confidence 6899999999999999999999998 7899999986542 1267888754
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCc----chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeC-CC--cc
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKL----EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHP-DQ--KV 370 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~----~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~-~~--~~ 370 (851)
. ..+++++|+|||+||.... ...+...+++|+.||.+|+++|.+..++++|||+||+++|| .. .+
T Consensus 195 ~--------~~~l~~~D~Vih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~~~~~~ 266 (516)
T 3oh8_A 195 A--------SDLLDGADVLVHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRGDEI 266 (516)
T ss_dssp C--------TTTTTTCSEEEECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSEEEEEE
T ss_pred h--------HHhcCCCCEEEECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCCCCCCc
Confidence 2 3456799999999998643 24567889999999999999944544699999999999988 22 26
Q ss_pred cccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCCch
Q psy11859 371 LEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-KLPVVIVRPSIVLPSFQEPVP 449 (851)
Q Consensus 371 i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-~l~~~ivRp~~V~G~~~~p~p 449 (851)
++|+.+. |.++ |+.+|..+|.++..... +++++|+||++||||.+..++
T Consensus 267 ~~E~~~~-~~~~-----------------------------y~~~~~~~E~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~ 316 (516)
T 3oh8_A 267 LTEESES-GDDF-----------------------------LAEVCRDWEHATAPASDAGKRVAFIRTGVALSGRGGMLP 316 (516)
T ss_dssp ECTTSCC-CSSH-----------------------------HHHHHHHHHHTTHHHHHTTCEEEEEEECEEEBTTBSHHH
T ss_pred cCCCCCC-CcCh-----------------------------HHHHHHHHHHHHHHHHhCCCCEEEEEeeEEECCCCChHH
Confidence 7777644 4444 99999999998766544 999999999999999876677
Q ss_pred hHhhhhcCCceEEEEccc---------CceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 450 GWVDSLNGPVGVLVASGK---------GVVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 450 ~~i~~~~~~~~~~~~~g~---------~v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
.++..+..+.+..++.|. |+++++....+ ...+++||++++ .++|+.|+++.+.+.+|.
T Consensus 317 ~~~~~~~~g~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~~g~~ni~~~--~~~s~~el~~~i~~~~g~ 385 (516)
T 3oh8_A 317 LLKTLFSTGLGGKFGDGTSWFSWIAIDDLTDIYYRAIVDAQISGPINAVAP--NPVSNADMTKILATSMHR 385 (516)
T ss_dssp HHHHTTC---CCCCTTSCCEECEEEHHHHHHHHHHHHHCTTCCEEEEESCS--CCEEHHHHHHHTTC----
T ss_pred HHHHHHHhCCCcccCCCCceEceEeHHHHHHHHHHHHhCcccCCcEEEECC--CCCCHHHHHHHHHHHhCC
Confidence 776665544444444443 33333222222 335679999998 789999999999998885
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=225.87 Aligned_cols=205 Identities=17% Similarity=0.195 Sum_probs=152.8
Q ss_pred CEEEEecCccHHHHHHHHHHHHh--CCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRS--CPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~--g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
|+|||||||||||++|++.|++. | .+|++++|..... +.+. ..+++++.+|++|
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g---~~V~~~~r~~~~~---~~l~------------------~~~~~~~~~D~~d 56 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPA---SQIIAIVRNVEKA---STLA------------------DQGVEVRHGDYNQ 56 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCG---GGEEEEESCTTTT---HHHH------------------HTTCEEEECCTTC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCC---CeEEEEEcCHHHH---hHHh------------------hcCCeEEEeccCC
Confidence 57999999999999999999998 6 6899999975432 1111 1268899999998
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccC
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLY 376 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~ 376 (851)
++ ++..+++++|+|||+||.. ... ++|+.||.+++++|++.+ +++|||+||.+++.
T Consensus 57 ~~------~l~~~~~~~d~vi~~a~~~-~~~------~~n~~~~~~l~~a~~~~~-~~~~v~~Ss~~~~~---------- 112 (287)
T 2jl1_A 57 PE------SLQKAFAGVSKLLFISGPH-YDN------TLLIVQHANVVKAARDAG-VKHIAYTGYAFAEE---------- 112 (287)
T ss_dssp HH------HHHHHTTTCSEEEECCCCC-SCH------HHHHHHHHHHHHHHHHTT-CSEEEEEEETTGGG----------
T ss_pred HH------HHHHHHhcCCEEEEcCCCC-cCc------hHHHHHHHHHHHHHHHcC-CCEEEEECCCCCCC----------
Confidence 86 8889999999999999963 221 679999999999999885 89999999976531
Q ss_pred CCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhHhhh-h
Q psy11859 377 PSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDS-L 455 (851)
Q Consensus 377 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~i~~-~ 455 (851)
. |..|+.||+.+|+++.+ .+++++++||+.++|+.. +.++.. +
T Consensus 113 -~------------------------------~~~y~~~K~~~E~~~~~--~~~~~~ilrp~~~~~~~~---~~~~~~~~ 156 (287)
T 2jl1_A 113 -S------------------------------IIPLAHVHLATEYAIRT--TNIPYTFLRNALYTDFFV---NEGLRAST 156 (287)
T ss_dssp -C------------------------------CSTHHHHHHHHHHHHHH--TTCCEEEEEECCBHHHHS---SGGGHHHH
T ss_pred -C------------------------------CCchHHHHHHHHHHHHH--cCCCeEEEECCEeccccc---hhhHHHHh
Confidence 0 13499999999999975 489999999999888641 223332 2
Q ss_pred cCCceEEEEccc---------CceeEEEeecC--CCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 456 NGPVGVLVASGK---------GVVRSMILNDL--STETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 456 ~~~~~~~~~~g~---------~v~~~~~~~~~--~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
..+. ...+.|. |+++++....+ ...+++||++++ .++|+.|+++.+.+.+|.
T Consensus 157 ~~~~-~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~~~g~~~~i~~~--~~~s~~e~~~~i~~~~g~ 219 (287)
T 2jl1_A 157 ESGA-IVTNAGSGIVNSVTRNELALAAATVLTEEGHENKTYNLVSN--QPWTFDELAQILSEVSGK 219 (287)
T ss_dssp HHTE-EEESCTTCCBCCBCHHHHHHHHHHHHTSSSCTTEEEEECCS--SCBCHHHHHHHHHHHHSS
T ss_pred hCCc-eeccCCCCccCccCHHHHHHHHHHHhcCCCCCCcEEEecCC--CcCCHHHHHHHHHHHHCC
Confidence 2222 2233332 33333332222 235789999988 689999999999999886
|
| >2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-25 Score=225.06 Aligned_cols=146 Identities=26% Similarity=0.433 Sum_probs=125.2
Q ss_pred CCCCCCCceeeeeccceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCcc
Q psy11859 676 NGQIRSNRFWHYFFVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQ 755 (851)
Q Consensus 676 ~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~ 755 (851)
...|..|+..|.+.++|.|..|++.|.+...|..|+++|.+++||+| +.|++.|.+...|..|++.|.+++||.|+
T Consensus 34 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~-- 109 (190)
T 2i13_A 34 SDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKC--PECGKSFSQRANLRAHQRTHTGEKPYACP-- 109 (190)
T ss_dssp SHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEEC--TTTCCEESCHHHHHHHHHHHHTCCCEECT--
T ss_pred HHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccC--cccCCccCCHHHHHHHHHhcCCCCCCcCC--
Confidence 66789999999999999999999999999999999999999999999 88999999999999999999999999998
Q ss_pred ccCccccCchhHHHhhhhcCCCCCccCCCCCCccccccccCCcc-----------cccCcccccccccCCCCCCccChHH
Q psy11859 756 DCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLLAILNCPHE-----------AECTPTFKHRAEKTSTPGPSMCKRH 824 (851)
Q Consensus 756 ~C~k~F~~~~~L~~H~r~H~gekp~~C~~Cgk~f~~~~~~~~H~-----------~~C~k~f~~~~~~~~~~~pf~Ck~~ 824 (851)
.|++.|.+...|..|+++|++++||.|+.|++.|.....+..|. ..|++.|.. +..
T Consensus 110 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~-------------~~~ 176 (190)
T 2i13_A 110 ECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSR-------------RDA 176 (190)
T ss_dssp TTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESS-------------HHH
T ss_pred CCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCC-------------HHH
Confidence 89999999999999999999999999999999998776555443 346666665 569
Q ss_pred HHHHHHhhcCCcch
Q psy11859 825 LAKHLKVHERQKYK 838 (851)
Q Consensus 825 L~~H~r~Htgek~~ 838 (851)
|..|+++|+|++||
T Consensus 177 L~~H~~~H~~~k~~ 190 (190)
T 2i13_A 177 LNVHQRTHTGKKTS 190 (190)
T ss_dssp HHHHHTTC------
T ss_pred HHHHHHhcCCCCCC
Confidence 99999999999986
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-24 Score=240.81 Aligned_cols=198 Identities=19% Similarity=0.184 Sum_probs=153.7
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|++.|. .+|++++|. .++
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~--~~v~~~d~~----------------------------------------~d~- 37 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTD--HHIFEVHRQ----------------------------------------TKE- 37 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCC--CEEEECCTT----------------------------------------CCH-
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--CEEEEECCC----------------------------------------CCH-
Confidence 6899999999999999999999972 144444332 333
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCce-EEEEeeeeeeeCCCcccccccCC
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLV-AFIHFSTAFCHPDQKVLEEKLYP 377 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~-~fV~vSTa~~~~~~~~i~E~~~~ 377 (851)
+++..+++++|+|||+||..... ++.+++++|+.||.+|+++|++.+ ++ +|||+||+++++
T Consensus 38 -----~~l~~~~~~~d~Vih~a~~~~~~-~~~~~~~~n~~~~~~l~~a~~~~~-~~~~~v~~Ss~~~~~----------- 99 (369)
T 3st7_A 38 -----EELESALLKADFIVHLAGVNRPE-HDKEFSLGNVSYLDHVLDILTRNT-KKPAILLSSSIQATQ----------- 99 (369)
T ss_dssp -----HHHHHHHHHCSEEEECCCSBCTT-CSTTCSSSCCBHHHHHHHHHTTCS-SCCEEEEEEEGGGGS-----------
T ss_pred -----HHHHHHhccCCEEEECCcCCCCC-CHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEeCchhhcC-----------
Confidence 37888888999999999987643 455678899999999999999886 65 999999987765
Q ss_pred CCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC-----chh
Q psy11859 378 SPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP-----VPG 450 (851)
Q Consensus 378 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p-----~p~ 450 (851)
. +.|+.||+.+|+++..+++ +++++|+||++||||+..+ ++.
T Consensus 100 --~-----------------------------~~Y~~sK~~~E~~~~~~~~~~g~~~~i~R~~~v~G~~~~~~~~~~~~~ 148 (369)
T 3st7_A 100 --D-----------------------------NPYGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCKPNYNSVIAT 148 (369)
T ss_dssp --C-----------------------------SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSSCHHHH
T ss_pred --C-----------------------------CCchHHHHHHHHHHHHHHHHhCCCEEEEECCceeCCCCCCCcchHHHH
Confidence 2 4599999999999998765 8999999999999998754 666
Q ss_pred HhhhhcCCceEEEEcccCceeEEEee---------cC-CCC--ccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 451 WVDSLNGPVGVLVASGKGVVRSMILN---------DL-STE--TQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 451 ~i~~~~~~~~~~~~~g~~v~~~~~~~---------~~-~~~--~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
++..+..+.++.++.+......+..+ .+ ... +++||++++ .++|+.|+++.+.+..+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~~~~~~~~i~~~--~~~s~~e~~~~~~~~~g~ 218 (369)
T 3st7_A 149 FCYKIARNEEIQVNDRNVELTLNYVDDIVAEIKRAIEGTPTIENGVPTVPNV--FKVTLGEIVDLLYKFKQS 218 (369)
T ss_dssp HHHHHHTTCCCCCSCTTCEEEEEEHHHHHHHHHHHHHTCCCEETTEECCSCC--EEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCeEecCCCeEEEEEEHHHHHHHHHHHHhCCcccCCceEEeCCC--CceeHHHHHHHHHHHhCC
Confidence 77766555555544443333222222 11 233 789999988 789999999999999875
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-25 Score=226.13 Aligned_cols=207 Identities=15% Similarity=0.170 Sum_probs=153.0
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC-C
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ-A 297 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~-~ 297 (851)
|+|||||||||||++|+++|++.| .+|++++|...... ...+++++.+|++| +
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~-----------------------~~~~~~~~~~D~~d~~ 54 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTD---YQIYAGARKVEQVP-----------------------QYNNVKAVHFDVDWTP 54 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSS---CEEEEEESSGGGSC-----------------------CCTTEEEEECCTTSCH
T ss_pred CeEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCccchh-----------------------hcCCceEEEecccCCH
Confidence 589999999999999999999998 78999999764321 11489999999998 6
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccCC
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYP 377 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~~ 377 (851)
+ ++..+++++|+|||+||.... +.+++|+.|+.+++++|++.+ +++||++||+++++.. +..| .++
T Consensus 55 ~------~~~~~~~~~d~vi~~ag~~~~-----~~~~~n~~~~~~l~~a~~~~~-~~~iv~~SS~~~~~~~-~~~e-~~~ 120 (219)
T 3dqp_A 55 E------EMAKQLHGMDAIINVSGSGGK-----SLLKVDLYGAVKLMQAAEKAE-VKRFILLSTIFSLQPE-KWIG-AGF 120 (219)
T ss_dssp H------HHHTTTTTCSEEEECCCCTTS-----SCCCCCCHHHHHHHHHHHHTT-CCEEEEECCTTTTCGG-GCCS-HHH
T ss_pred H------HHHHHHcCCCEEEECCcCCCC-----CcEeEeHHHHHHHHHHHHHhC-CCEEEEECcccccCCC-cccc-ccc
Confidence 5 888999999999999998652 367889999999999999885 8999999998776532 2333 111
Q ss_pred CCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhHhhhhcC
Q psy11859 378 SPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDSLNG 457 (851)
Q Consensus 378 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~i~~~~~ 457 (851)
.| .+.|+.||+.+|.++. ...+++++++||+.|+|+.......+ +
T Consensus 121 ~~-----------------------------~~~Y~~sK~~~e~~~~-~~~~i~~~ilrp~~v~g~~~~~~~~~-----~ 165 (219)
T 3dqp_A 121 DA-----------------------------LKDYYIAKHFADLYLT-KETNLDYTIIQPGALTEEEATGLIDI-----N 165 (219)
T ss_dssp HH-----------------------------THHHHHHHHHHHHHHH-HSCCCEEEEEEECSEECSCCCSEEEE-----S
T ss_pred cc-----------------------------ccHHHHHHHHHHHHHH-hccCCcEEEEeCceEecCCCCCcccc-----C
Confidence 11 2459999999999997 33499999999999999865431110 1
Q ss_pred CceEEEEcccCceeEEEeecCC--CCccEEEEeCCCCccccHHHHHHH
Q psy11859 458 PVGVLVASGKGVVRSMILNDLS--TETQVFNISSNEVEAITWGEIISR 503 (851)
Q Consensus 458 ~~~~~~~~g~~v~~~~~~~~~~--~~~~iyni~~~~~~~~t~~el~~~ 503 (851)
....-....+|+++++...... ..+++||+++| +.++.|+...
T Consensus 166 ~~~~~~i~~~Dva~~i~~~l~~~~~~g~~~~i~~g---~~~~~e~~~~ 210 (219)
T 3dqp_A 166 DEVSASNTIGDVADTIKELVMTDHSIGKVISMHNG---KTAIKEALES 210 (219)
T ss_dssp SSCCCCEEHHHHHHHHHHHHTCGGGTTEEEEEEEC---SEEHHHHHHT
T ss_pred CCcCCcccHHHHHHHHHHHHhCccccCcEEEeCCC---CccHHHHHHH
Confidence 1111122234555555444332 24789999888 3788887653
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-23 Score=219.57 Aligned_cols=166 Identities=17% Similarity=0.165 Sum_probs=141.7
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++|+|||||||||||++|+++|++.| .+|++++|...... ..+++++.+|++|
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G---~~V~~~~r~~~~~~------------------------~~~~~~~~~Dl~d 54 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMA---EILRLADLSPLDPA------------------------GPNEECVQCDLAD 54 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGE---EEEEEEESSCCCCC------------------------CTTEEEEECCTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcC---CEEEEEecCCcccc------------------------CCCCEEEEcCCCC
Confidence 46899999999999999999999998 78999999865421 2478999999998
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC---ccccc
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ---KVLEE 373 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~---~~i~E 373 (851)
++ ++..+++++|+|||+||.. ..++++..+++|+.||.+++++|++.+ +++||++||..+++.. .+++|
T Consensus 55 ~~------~~~~~~~~~D~vi~~Ag~~-~~~~~~~~~~~N~~g~~~l~~a~~~~~-~~~iv~~SS~~~~g~~~~~~~~~e 126 (267)
T 3rft_A 55 AN------AVNAMVAGCDGIVHLGGIS-VEKPFEQILQGNIIGLYNLYEAARAHG-QPRIVFASSNHTIGYYPQTERLGP 126 (267)
T ss_dssp HH------HHHHHHTTCSEEEECCSCC-SCCCHHHHHHHHTHHHHHHHHHHHHTT-CCEEEEEEEGGGGTTSBTTSCBCT
T ss_pred HH------HHHHHHcCCCEEEECCCCc-CcCCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEcchHHhCCCCCCCCCCC
Confidence 86 8899999999999999984 445678899999999999999998885 8999999998887632 36777
Q ss_pred ccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCC
Q psy11859 374 KLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 374 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~ 446 (851)
+.+..|.++ |+.||+.+|.+++.++. +++++++||+.|+|+...
T Consensus 127 ~~~~~~~~~-----------------------------Y~~sK~~~e~~~~~~a~~~g~~~~~vr~~~v~~~~~~ 172 (267)
T 3rft_A 127 DVPARPDGL-----------------------------YGVSKCFGENLARMYFDKFGQETALVRIGSCTPEPNN 172 (267)
T ss_dssp TSCCCCCSH-----------------------------HHHHHHHHHHHHHHHHHHHCCCEEEEEECBCSSSCCS
T ss_pred CCCCCCCCh-----------------------------HHHHHHHHHHHHHHHHHHhCCeEEEEEeecccCCCCC
Confidence 766666555 99999999999987764 899999999999997543
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-23 Score=221.27 Aligned_cols=214 Identities=18% Similarity=0.212 Sum_probs=159.3
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|++ + .+|++++|..... ++ +.+|++|++
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g---~~V~~~~r~~~~~--------------------------~~---~~~Dl~~~~ 47 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-R---HEVIKVYNSSEIQ--------------------------GG---YKLDLTDFP 47 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-T---SCEEEEESSSCCT--------------------------TC---EECCTTSHH
T ss_pred CEEEEECCCChhHHHHHHHHhc-C---CeEEEecCCCcCC--------------------------CC---ceeccCCHH
Confidence 5799999999999999999994 6 6789999976320 12 789999876
Q ss_pred CCCCHHHHHHHhcC--ccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc-ccc
Q psy11859 299 LGIKDSDLLMLQEE--VSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK-VLE 372 (851)
Q Consensus 299 lgls~~~~~~~~~~--vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~-~i~ 372 (851)
++..++++ +|+|||+||..... +++...+++|+.|+.+++++|.+.+ . +||++||..+++... ++.
T Consensus 48 ------~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~iv~~SS~~~~~~~~~~~~ 119 (273)
T 2ggs_A 48 ------RLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVID-S-YIVHISTDYVFDGEKGNYK 119 (273)
T ss_dssp ------HHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT-C-EEEEEEEGGGSCSSSCSBC
T ss_pred ------HHHHHHHhcCCCEEEECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhC-C-eEEEEecceeEcCCCCCcC
Confidence 77777775 99999999987653 4667889999999999999999875 5 899999998876543 677
Q ss_pred cccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhH-
Q psy11859 373 EKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGW- 451 (851)
Q Consensus 373 E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~- 451 (851)
|+.++.|.++ |+.||+.+|.++.. ++++++||+.|||+ .++..+
T Consensus 120 e~~~~~~~~~-----------------------------Y~~sK~~~e~~~~~----~~~~~iR~~~v~G~--~~~~~~~ 164 (273)
T 2ggs_A 120 EEDIPNPINY-----------------------------YGLSKLLGETFALQ----DDSLIIRTSGIFRN--KGFPIYV 164 (273)
T ss_dssp TTSCCCCSSH-----------------------------HHHHHHHHHHHHCC----TTCEEEEECCCBSS--SSHHHHH
T ss_pred CCCCCCCCCH-----------------------------HHHHHHHHHHHHhC----CCeEEEeccccccc--cHHHHHH
Confidence 7766555555 99999999999876 78899999999983 343333
Q ss_pred hhhhcCCceEEEEc-------ccCceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHHHHhhcC
Q psy11859 452 VDSLNGPVGVLVAS-------GKGVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 452 i~~~~~~~~~~~~~-------g~~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
+..+..+..+.... .+|+++++....+...+++||+++ .++|+.|+++.+.+.+|..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~dva~~i~~~~~~~~~g~~~i~~---~~~s~~e~~~~~~~~~g~~ 228 (273)
T 2ggs_A 165 YKTLKEGKTVFAFKGYYSPISARKLASAILELLELRKTGIIHVAG---ERISRFELALKIKEKFNLP 228 (273)
T ss_dssp HHHHHTTCCEEEESCEECCCBHHHHHHHHHHHHHHTCCEEEECCC---CCEEHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCCEEeecCCCCceEHHHHHHHHHHHHhcCcCCeEEECC---CcccHHHHHHHHHHHhCCC
Confidence 34433333332221 123333332222222356999986 3699999999999998854
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.7e-24 Score=222.11 Aligned_cols=216 Identities=16% Similarity=0.167 Sum_probs=153.1
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCe-EEEEc
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRL-HIIEG 292 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v-~~v~g 292 (851)
..++||+|||||||||||++|+++|++.| .+|++++|.... .+.+ .. .++ +++.+
T Consensus 17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G---~~V~~~~R~~~~---~~~~------------~~------~~~~~~~~~ 72 (236)
T 3e8x_A 17 LYFQGMRVLVVGANGKVARYLLSELKNKG---HEPVAMVRNEEQ---GPEL------------RE------RGASDIVVA 72 (236)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSGGG---HHHH------------HH------TTCSEEEEC
T ss_pred cCcCCCeEEEECCCChHHHHHHHHHHhCC---CeEEEEECChHH---HHHH------------Hh------CCCceEEEc
Confidence 34689999999999999999999999998 789999997543 1111 11 267 89999
Q ss_pred CCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccc
Q psy11859 293 DILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLE 372 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~ 372 (851)
|++ + ++...+.++|+|||+||.... ..+...+++|+.|+.+++++|++.+ +++||++||..+...
T Consensus 73 Dl~--~------~~~~~~~~~D~vi~~ag~~~~-~~~~~~~~~n~~~~~~l~~a~~~~~-~~~iv~~SS~~~~~~----- 137 (236)
T 3e8x_A 73 NLE--E------DFSHAFASIDAVVFAAGSGPH-TGADKTILIDLWGAIKTIQEAEKRG-IKRFIMVSSVGTVDP----- 137 (236)
T ss_dssp CTT--S------CCGGGGTTCSEEEECCCCCTT-SCHHHHHHTTTHHHHHHHHHHHHHT-CCEEEEECCTTCSCG-----
T ss_pred ccH--H------HHHHHHcCCCEEEECCCCCCC-CCccccchhhHHHHHHHHHHHHHcC-CCEEEEEecCCCCCC-----
Confidence 999 2 456777899999999997653 5677899999999999999999885 899999999433221
Q ss_pred cccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhHh
Q psy11859 373 EKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWV 452 (851)
Q Consensus 373 E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~i 452 (851)
|..+ .+ .+.|+.||+.+|.+++ ..+++++++||+.|+|+.........
T Consensus 138 ~~~~-~~-----------------------------~~~Y~~sK~~~e~~~~--~~gi~~~~lrpg~v~~~~~~~~~~~~ 185 (236)
T 3e8x_A 138 DQGP-MN-----------------------------MRHYLVAKRLADDELK--RSSLDYTIVRPGPLSNEESTGKVTVS 185 (236)
T ss_dssp GGSC-GG-----------------------------GHHHHHHHHHHHHHHH--HSSSEEEEEEECSEECSCCCSEEEEE
T ss_pred CCCh-hh-----------------------------hhhHHHHHHHHHHHHH--HCCCCEEEEeCCcccCCCCCCeEEec
Confidence 1111 11 2459999999999987 35899999999999998654311111
Q ss_pred hhhcCCceEEEEcccCceeEEEeecCC--CCccEEEEeCCCCccccHHHHHHHHH
Q psy11859 453 DSLNGPVGVLVASGKGVVRSMILNDLS--TETQVFNISSNEVEAITWGEIISRGK 505 (851)
Q Consensus 453 ~~~~~~~~~~~~~g~~v~~~~~~~~~~--~~~~iyni~~~~~~~~t~~el~~~~~ 505 (851)
....+ .......+|+++++....+. ..+++||++++ ++++.|+++.+.
T Consensus 186 ~~~~~--~~~~i~~~Dva~~~~~~~~~~~~~g~~~~v~~~---~~~~~e~~~~i~ 235 (236)
T 3e8x_A 186 PHFSE--ITRSITRHDVAKVIAELVDQQHTIGKTFEVLNG---DTPIAKVVEQLG 235 (236)
T ss_dssp SSCSC--CCCCEEHHHHHHHHHHHTTCGGGTTEEEEEEEC---SEEHHHHHHTC-
T ss_pred cCCCc--ccCcEeHHHHHHHHHHHhcCccccCCeEEEeCC---CcCHHHHHHHhc
Confidence 11111 11112234555555444332 35789999887 389999988654
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-22 Score=214.18 Aligned_cols=216 Identities=17% Similarity=0.160 Sum_probs=160.4
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|++.| .+|++++|...... ..+++++.+|++|++
T Consensus 3 ~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~------------------------~~~~~~~~~Dl~d~~ 55 (267)
T 3ay3_A 3 NRLLVTGAAGGVGSAIRPHLGTLA---HEVRLSDIVDLGAA------------------------EAHEEIVACDLADAQ 55 (267)
T ss_dssp EEEEEESTTSHHHHHHGGGGGGTE---EEEEECCSSCCCCC------------------------CTTEEECCCCTTCHH
T ss_pred ceEEEECCCCHHHHHHHHHHHhCC---CEEEEEeCCCcccc------------------------CCCccEEEccCCCHH
Confidence 689999999999999999999987 78999999764310 136789999999876
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC---ccccccc
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ---KVLEEKL 375 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~---~~i~E~~ 375 (851)
.+..+++++|+|||+||... ..++...+++|+.|+.+++++|.+.+ +++||++||..+++.. .+++|+.
T Consensus 56 ------~~~~~~~~~d~vi~~a~~~~-~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~iv~~SS~~~~~~~~~~~~~~E~~ 127 (267)
T 3ay3_A 56 ------AVHDLVKDCDGIIHLGGVSV-ERPWNDILQANIIGAYNLYEAARNLG-KPRIVFASSNHTIGYYPRTTRIDTEV 127 (267)
T ss_dssp ------HHHHHHTTCSEEEECCSCCS-CCCHHHHHHHTHHHHHHHHHHHHHTT-CCEEEEEEEGGGSTTSBTTSCBCTTS
T ss_pred ------HHHHHHcCCCEEEECCcCCC-CCCHHHHHHHHHHHHHHHHHHHHHhC-CCEEEEeCCHHHhCCCCCCCCCCCCC
Confidence 88888999999999999763 45567889999999999999999875 8999999999888653 3677877
Q ss_pred CCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCCchhHhh
Q psy11859 376 YPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEPVPGWVD 453 (851)
Q Consensus 376 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p~p~~i~ 453 (851)
++.|.++ |+.||+.+|.++..+.. +++++++||++||+....+ ...
T Consensus 128 ~~~~~~~-----------------------------Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~~~~~~~--~~~- 175 (267)
T 3ay3_A 128 PRRPDSL-----------------------------YGLSKCFGEDLASLYYHKFDIETLNIRIGSCFPKPKDA--RMM- 175 (267)
T ss_dssp CCCCCSH-----------------------------HHHHHHHHHHHHHHHHHTTCCCEEEEEECBCSSSCCSH--HHH-
T ss_pred CCCCCCh-----------------------------HHHHHHHHHHHHHHHHHHcCCCEEEEeceeecCCCCCC--Cee-
Confidence 6665555 99999999999987643 8999999999999532110 000
Q ss_pred hhcCCceEEEEcccCceeEEEeecCC--CCccEEEEeCCCCccccHHHHHHHHHHHhhcCC
Q psy11859 454 SLNGPVGVLVASGKGVVRSMILNDLS--TETQVFNISSNEVEAITWGEIISRGKQLIYQYP 512 (851)
Q Consensus 454 ~~~~~~~~~~~~g~~v~~~~~~~~~~--~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~p 512 (851)
......+|+++++....+. ...++||+.++ .+.+|.|+.+. +.+|..|
T Consensus 176 -------~~~~~~~dva~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~--~~lg~~p 225 (267)
T 3ay3_A 176 -------ATWLSVDDFMRLMKRAFVAPKLGCTVVYGASA--NTESWWDNDKS--AFLGWVP 225 (267)
T ss_dssp -------HHBCCHHHHHHHHHHHHHSSCCCEEEEEECCS--CSSCCBCCGGG--GGGCCCC
T ss_pred -------eccccHHHHHHHHHHHHhCCCCCceeEecCCC--ccccccCHHHH--HHcCCCC
Confidence 0011223444443322221 22468888776 45677777666 5556443
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6e-23 Score=215.72 Aligned_cols=228 Identities=15% Similarity=0.121 Sum_probs=160.4
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++|+|||||||||||++|++.|++.+++ .+|++++|... ++.++ ..++.++.+|++|
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g-~~V~~~~r~~~------~~~~~----------------~~~~~~~~~D~~d 59 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDK-FVAKGLVRSAQ------GKEKI----------------GGEADVFIGDITD 59 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTT-CEEEEEESCHH------HHHHT----------------TCCTTEEECCTTS
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCC-cEEEEEEcCCC------chhhc----------------CCCeeEEEecCCC
Confidence 4689999999999999999999998312 78999999632 11111 1367789999998
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcc----------------hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEee
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLE----------------AELKENVAANTRGTQRLLDIALKMKKLVAFIHFS 360 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~----------------~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vS 360 (851)
++ ++..+++++|+|||+||..... +.....+++|+.|+.+++++|++.+ +++||++|
T Consensus 60 ~~------~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~iv~~S 132 (253)
T 1xq6_A 60 AD------SINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAG-VKHIVVVG 132 (253)
T ss_dssp HH------HHHHHHTTCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHT-CSEEEEEE
T ss_pred HH------HHHHHHcCCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcC-CCEEEEEc
Confidence 76 8889999999999999975421 1112467999999999999999885 89999999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccc
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIV 440 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V 440 (851)
|..++... .|.++. ....|+.||+.+|.++.. .+++++++||+.|
T Consensus 133 S~~~~~~~---------~~~~~~------------------------~~~~y~~sK~~~e~~~~~--~~i~~~~vrpg~v 177 (253)
T 1xq6_A 133 SMGGTNPD---------HPLNKL------------------------GNGNILVWKRKAEQYLAD--SGTPYTIIRAGGL 177 (253)
T ss_dssp ETTTTCTT---------CGGGGG------------------------GGCCHHHHHHHHHHHHHT--SSSCEEEEEECEE
T ss_pred CccCCCCC---------Cccccc------------------------cchhHHHHHHHHHHHHHh--CCCceEEEeccee
Confidence 97653211 111110 013488899999999865 5899999999999
Q ss_pred cCCCCCC---chhHhhhhcCCceEEEEcccCceeEEEeecCC--CCccEEEEeCCCC-ccccHHHHHHHHHHHhhc
Q psy11859 441 LPSFQEP---VPGWVDSLNGPVGVLVASGKGVVRSMILNDLS--TETQVFNISSNEV-EAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 441 ~G~~~~p---~p~~i~~~~~~~~~~~~~g~~v~~~~~~~~~~--~~~~iyni~~~~~-~~~t~~el~~~~~~~~~~ 510 (851)
+|+.... +.+....+.++. ......+|+++++....+. ..+++||+++++. .++|+.|+++.+.+..|+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dva~~~~~~~~~~~~~g~~~~i~~~~~~~~~s~~e~~~~~~~~~g~ 252 (253)
T 1xq6_A 178 LDKEGGVRELLVGKDDELLQTD-TKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSR 252 (253)
T ss_dssp ECSCSSSSCEEEESTTGGGGSS-CCEEEHHHHHHHHHHHTTCGGGTTEEEEEEECCTTTSCCCCCHHHHHHTCCCC
T ss_pred ecCCcchhhhhccCCcCCcCCC-CcEEcHHHHHHHHHHHHcCccccCCEEEecCCCcCCCCCHHHHHHHHHHHhCC
Confidence 9987542 111111111111 1122345566555544332 2477999998742 469999999999988764
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.3e-23 Score=210.48 Aligned_cols=200 Identities=21% Similarity=0.216 Sum_probs=146.6
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++|+|||||||||||++|+++|++.|. ..+|++++|..... .++++++.+|+++
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~-~~~V~~~~r~~~~~-------------------------~~~~~~~~~D~~~ 57 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPT-LAKVIAPARKALAE-------------------------HPRLDNPVGPLAE 57 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTT-CCEEECCBSSCCCC-------------------------CTTEECCBSCHHH
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCC-CCeEEEEeCCCccc-------------------------CCCceEEeccccC
Confidence 468999999999999999999999872 12899999976430 1378889999998
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCccccccc
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKL 375 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~ 375 (851)
++ ++..++ +|+|||+|+..... .++.+.+++|+.|+.+++++|++.+ +++||++||..+++.
T Consensus 58 ~~------~~~~~~--~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~Ss~~~~~~-------- 120 (215)
T 2a35_A 58 LL------PQLDGS--IDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMG-ARHYLVVSALGADAK-------- 120 (215)
T ss_dssp HG------GGCCSC--CSEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTT-CCEEEEECCTTCCTT--------
T ss_pred HH------HHHHhh--hcEEEECeeeccccCCCHHHHHHhhHHHHHHHHHHHHHcC-CCEEEEECCcccCCC--------
Confidence 75 555555 99999999976532 4577889999999999999999885 899999999876542
Q ss_pred CCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCC-EEEEecccccCCCCCCchhHhhh
Q psy11859 376 YPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLP-VVIVRPSIVLPSFQEPVPGWVDS 454 (851)
Q Consensus 376 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~-~~ivRp~~V~G~~~~p~p~~i~~ 454 (851)
|. +.|+.+|+.+|+++... +++ ++++||+.|||+...+ .+.+.
T Consensus 121 ---~~-----------------------------~~y~~sK~~~e~~~~~~--~~~~~~~vrp~~v~g~~~~~--~~~~~ 164 (215)
T 2a35_A 121 ---SS-----------------------------IFYNRVKGELEQALQEQ--GWPQLTIARPSLLFGPREEF--RLAEI 164 (215)
T ss_dssp ---CS-----------------------------SHHHHHHHHHHHHHTTS--CCSEEEEEECCSEESTTSCE--EGGGG
T ss_pred ---Cc-----------------------------cHHHHHHHHHHHHHHHc--CCCeEEEEeCceeeCCCCcc--hHHHH
Confidence 22 34999999999998764 799 9999999999997652 23333
Q ss_pred hcCCceEEEEcc-------cCceeEEEeecCCCCccEEEEeCCCCccccHH
Q psy11859 455 LNGPVGVLVASG-------KGVVRSMILNDLSTETQVFNISSNEVEAITWG 498 (851)
Q Consensus 455 ~~~~~~~~~~~g-------~~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~ 498 (851)
+.+.... ++.+ +|+++++....+...+++||++++ +++++.
T Consensus 165 ~~~~~~~-~~~~~~~~i~~~Dva~~~~~~~~~~~~~~~~i~~~--~~~~~~ 212 (215)
T 2a35_A 165 LAAPIAR-ILPGKYHGIEACDLARALWRLALEEGKGVRFVESD--ELRKLG 212 (215)
T ss_dssp TTCCCC-----CHHHHHHHHHHHHHHHHHHTCCCSEEEEEEHH--HHHHHH
T ss_pred HHHhhhh-ccCCCcCcEeHHHHHHHHHHHHhcCCCCceEEcHH--HHHHhh
Confidence 3321111 1111 345554444444444778888877 455543
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=216.86 Aligned_cols=221 Identities=15% Similarity=0.123 Sum_probs=153.8
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCH-HHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTP-KARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~-~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+.|+|||||||||||++|++.|++.| .+|++++|....... .+++..+ . ..+++++.||++
T Consensus 9 ~~~~IlVtGatG~iG~~l~~~L~~~g---~~V~~l~R~~~~~~~~~~~~~~l---------~------~~~v~~~~~Dl~ 70 (346)
T 3i6i_A 9 PKGRVLIAGATGFIGQFVATASLDAH---RPTYILARPGPRSPSKAKIFKAL---------E------DKGAIIVYGLIN 70 (346)
T ss_dssp --CCEEEECTTSHHHHHHHHHHHHTT---CCEEEEECSSCCCHHHHHHHHHH---------H------HTTCEEEECCTT
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCC---CCEEEEECCCCCChhHHHHHHHH---------H------hCCcEEEEeecC
Confidence 46799999999999999999999997 689999998744211 1111111 1 137899999999
Q ss_pred CCcCCCCHHHHHHHhc--CccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCccccc
Q psy11859 296 QANLGIKDSDLLMLQE--EVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEE 373 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~--~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E 373 (851)
|++ ++..+++ ++|+|||+||.. |+.++.+|+++|++.+.+++||+ |+ | |. ..+|
T Consensus 71 d~~------~l~~~~~~~~~d~Vi~~a~~~------------n~~~~~~l~~aa~~~g~v~~~v~-S~-~--g~--~~~e 126 (346)
T 3i6i_A 71 EQE------AMEKILKEHEIDIVVSTVGGE------------SILDQIALVKAMKAVGTIKRFLP-SE-F--GH--DVNR 126 (346)
T ss_dssp CHH------HHHHHHHHTTCCEEEECCCGG------------GGGGHHHHHHHHHHHCCCSEEEC-SC-C--SS--CTTT
T ss_pred CHH------HHHHHHhhCCCCEEEECCchh------------hHHHHHHHHHHHHHcCCceEEee-cc-c--CC--CCCc
Confidence 876 8889999 999999999973 99999999999999866999986 42 2 21 2334
Q ss_pred ccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhHhh
Q psy11859 374 KLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVD 453 (851)
Q Consensus 374 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~i~ 453 (851)
..+..|. +.|+.+|+.+|.++.+ .+++++++||+.++|.....+.....
T Consensus 127 ~~~~~p~-----------------------------~~y~~sK~~~e~~l~~--~g~~~tivrpg~~~g~~~~~~~~~~~ 175 (346)
T 3i6i_A 127 ADPVEPG-----------------------------LNMYREKRRVRQLVEE--SGIPFTYICCNSIASWPYYNNIHPSE 175 (346)
T ss_dssp CCCCTTH-----------------------------HHHHHHHHHHHHHHHH--TTCCBEEEECCEESSCCCSCC-----
T ss_pred cCcCCCc-----------------------------chHHHHHHHHHHHHHH--cCCCEEEEEecccccccCcccccccc
Confidence 3333333 3499999999999987 48999999999999976443322211
Q ss_pred h-hcCCceEEEEcccC---------ceeEEEeecCC--CCccEEEEeCCCCccccHHHHHHHHHHHhhcC
Q psy11859 454 S-LNGPVGVLVASGKG---------VVRSMILNDLS--TETQVFNISSNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 454 ~-~~~~~~~~~~~g~~---------v~~~~~~~~~~--~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
. ..++...+.+.|.. +++++...... ..+++||++++. +++|+.|+++.+.+.+|..
T Consensus 176 ~~~~~~~~~~~g~g~~~~~~i~~~Dva~~~~~~l~~~~~~~~~~~i~g~~-~~~s~~e~~~~~~~~~g~~ 244 (346)
T 3i6i_A 176 VLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKTVDDVRTLNKSVHFRPSC-NCLNINELASVWEKKIGRT 244 (346)
T ss_dssp CCCCSSCEEEETTSCCCEEEECHHHHHHHHHHHTTCGGGTTEEEECCCGG-GEECHHHHHHHHHHHHTSC
T ss_pred ccCCCceEEEccCCCceEEecCHHHHHHHHHHHHhCccccCeEEEEeCCC-CCCCHHHHHHHHHHHHCCC
Confidence 1 13333344444432 22222222222 236788887321 6899999999999999863
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=210.41 Aligned_cols=201 Identities=14% Similarity=0.162 Sum_probs=144.1
Q ss_pred EEEEecCccHHHHHHHHHHHHh--CCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRS--CPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~--g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+|||||||||||++|+++|++. | .+|++++|..... +.+. ..+++++.+|++|+
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g---~~V~~~~r~~~~~---~~~~------------------~~~~~~~~~D~~d~ 56 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPA---SQIVAIVRNPAKA---QALA------------------AQGITVRQADYGDE 56 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCG---GGEEEEESCTTTC---HHHH------------------HTTCEEEECCTTCH
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCC---ceEEEEEcChHhh---hhhh------------------cCCCeEEEcCCCCH
Confidence 4899999999999999999998 6 6799999975432 1110 02688999999988
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccCC
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYP 377 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~~ 377 (851)
+ ++..+++++|+|||+||.. + ..|+.+|.+++++|++.+ +++||++||..++.
T Consensus 57 ~------~~~~~~~~~d~vi~~a~~~-----~----~~~~~~~~~l~~a~~~~~-~~~~v~~Ss~~~~~----------- 109 (286)
T 2zcu_A 57 A------ALTSALQGVEKLLLISSSE-----V----GQRAPQHRNVINAAKAAG-VKFIAYTSLLHADT----------- 109 (286)
T ss_dssp H------HHHHHTTTCSEEEECC-----------------CHHHHHHHHHHHHT-CCEEEEEEETTTTT-----------
T ss_pred H------HHHHHHhCCCEEEEeCCCC-----c----hHHHHHHHHHHHHHHHcC-CCEEEEECCCCCCC-----------
Confidence 6 8889999999999999952 1 258999999999999885 89999999976541
Q ss_pred CCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhHhhh-hc
Q psy11859 378 SPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDS-LN 456 (851)
Q Consensus 378 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~i~~-~~ 456 (851)
. |..|+.||+.+|.++.+ .+++++++||+.++++.. .++.. +.
T Consensus 110 ~------------------------------~~~y~~sK~~~e~~~~~--~~~~~~ilrp~~~~~~~~----~~~~~~~~ 153 (286)
T 2zcu_A 110 S------------------------------PLGLADEHIETEKMLAD--SGIVYTLLRNGWYSENYL----ASAPAALE 153 (286)
T ss_dssp C------------------------------CSTTHHHHHHHHHHHHH--HCSEEEEEEECCBHHHHH----TTHHHHHH
T ss_pred C------------------------------cchhHHHHHHHHHHHHH--cCCCeEEEeChHHhhhhH----HHhHHhhc
Confidence 0 23499999999999976 389999999987666432 22222 22
Q ss_pred CCceEEEEccc---------CceeEEEeecC--CCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 457 GPVGVLVASGK---------GVVRSMILNDL--STETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 457 ~~~~~~~~~g~---------~v~~~~~~~~~--~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
++ .+..+.+. |+++++..... ...+++||++++ .++|+.|+++.+.+.+|.
T Consensus 154 ~~-~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~~~g~~~~i~~~--~~~s~~e~~~~i~~~~g~ 215 (286)
T 2zcu_A 154 HG-VFIGAAGDGKIASATRADYAAAAARVISEAGHEGKVYELAGD--SAWTLTQLAAELTKQSGK 215 (286)
T ss_dssp HT-EEEESCTTCCBCCBCHHHHHHHHHHHHHSSSCTTCEEEECCS--SCBCHHHHHHHHHHHHSS
T ss_pred CC-ceeccCCCCccccccHHHHHHHHHHHhcCCCCCCceEEEeCC--CcCCHHHHHHHHHHHHCC
Confidence 22 22233332 33333322211 235789999988 679999999999999885
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-22 Score=204.80 Aligned_cols=157 Identities=13% Similarity=0.113 Sum_probs=116.1
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|++.| .+|++++|.... +..+ .++++++.+|++|++
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~------~~~~----------------~~~~~~~~~D~~d~~ 55 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRG---HEVTAIVRNAGK------ITQT----------------HKDINILQKDIFDLT 55 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCSHH------HHHH----------------CSSSEEEECCGGGCC
T ss_pred CeEEEEcCCchhHHHHHHHHHhCC---CEEEEEEcCchh------hhhc----------------cCCCeEEeccccChh
Confidence 589999999999999999999998 789999997432 1111 147899999999997
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC-c--cccccc
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ-K--VLEEKL 375 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~-~--~i~E~~ 375 (851)
+ ..+.++|+|||+||.... ....|+.+|.+++++|++.+ +++||++||+.++... . +..|+.
T Consensus 56 ------~--~~~~~~d~vi~~ag~~~~------~~~~~~~~~~~l~~a~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~ 120 (221)
T 3ew7_A 56 ------L--SDLSDQNVVVDAYGISPD------EAEKHVTSLDHLISVLNGTV-SPRLLVVGGAASLQIDEDGNTLLESK 120 (221)
T ss_dssp ------H--HHHTTCSEEEECCCSSTT------TTTSHHHHHHHHHHHHCSCC-SSEEEEECCCC---------------
T ss_pred ------h--hhhcCCCEEEECCcCCcc------ccchHHHHHHHHHHHHHhcC-CceEEEEecceEEEcCCCCccccccC
Confidence 3 667899999999998532 24569999999999998875 8999999997654322 1 333333
Q ss_pred CCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHH--hCCCCEEEEecccccCCC
Q psy11859 376 YPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY--KTKLPVVIVRPSIVLPSF 444 (851)
Q Consensus 376 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~--~~~l~~~ivRp~~V~G~~ 444 (851)
+..|. +.|+.+|+.+|.+.... ..+++++++||+.|||+.
T Consensus 121 ~~~~~-----------------------------~~y~~~k~~~e~~~~~~~~~~gi~~~ivrp~~v~g~~ 162 (221)
T 3ew7_A 121 GLREA-----------------------------PYYPTARAQAKQLEHLKSHQAEFSWTYISPSAMFEPG 162 (221)
T ss_dssp ----C-----------------------------CCSCCHHHHHHHHHHHHTTTTTSCEEEEECSSCCCCC
T ss_pred CCCCH-----------------------------HHHHHHHHHHHHHHHHHhhccCccEEEEeCcceecCC
Confidence 33333 34999999999974333 349999999999999983
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-21 Score=202.22 Aligned_cols=158 Identities=12% Similarity=0.044 Sum_probs=120.3
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|++.| .+|++++|.... +.++ ..++++++.+|++|++
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~------~~~~---------------~~~~~~~~~~D~~d~~ 56 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRG---HEVLAVVRDPQK------AADR---------------LGATVATLVKEPLVLT 56 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH------HHHH---------------TCTTSEEEECCGGGCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCC---CEEEEEEecccc------cccc---------------cCCCceEEeccccccc
Confidence 579999999999999999999998 789999996421 2111 1137899999999997
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCC-Cc----cccc
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPD-QK----VLEE 373 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~-~~----~i~E 373 (851)
+ ..+.++|+|||+||...... ...+|+.||.+++++|++.+ ++||++||+.+... .. ..+|
T Consensus 57 ------~--~~~~~~d~vi~~ag~~~~~~----~~~~n~~~~~~l~~a~~~~~--~~~v~~SS~~~~~~~~~~~~~~~~~ 122 (224)
T 3h2s_A 57 ------E--ADLDSVDAVVDALSVPWGSG----RGYLHLDFATHLVSLLRNSD--TLAVFILGSASLAMPGADHPMILDF 122 (224)
T ss_dssp ------H--HHHTTCSEEEECCCCCTTSS----CTHHHHHHHHHHHHTCTTCC--CEEEEECCGGGSBCTTCSSCGGGGC
T ss_pred ------H--hhcccCCEEEECCccCCCcc----hhhHHHHHHHHHHHHHHHcC--CcEEEEecceeeccCCCCccccccC
Confidence 4 66789999999999862211 24679999999999998885 89999999754322 11 3333
Q ss_pred ccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh-C-CCCEEEEecccccCCC
Q psy11859 374 KLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK-T-KLPVVIVRPSIVLPSF 444 (851)
Q Consensus 374 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~-~-~l~~~ivRp~~V~G~~ 444 (851)
...+.|. +.|+.||+.+|.+ ..+. . +++++++||+.|||+.
T Consensus 123 ~~~~~~~-----------------------------~~y~~sK~~~e~~-~~~~~~~~i~~~ivrp~~v~g~~ 165 (224)
T 3h2s_A 123 PESAASQ-----------------------------PWYDGALYQYYEY-QFLQMNANVNWIGISPSEAFPSG 165 (224)
T ss_dssp CGGGGGS-----------------------------TTHHHHHHHHHHH-HHHTTCTTSCEEEEEECSBCCCC
T ss_pred CCCCccc-----------------------------hhhHHHHHHHHHH-HHHHhcCCCcEEEEcCccccCCC
Confidence 3333333 3499999999965 3343 3 9999999999999984
|
| >1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-22 Score=203.47 Aligned_cols=123 Identities=20% Similarity=0.275 Sum_probs=104.2
Q ss_pred ccCccCCCCCCCCCceeeeeccceee--cCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHH-hhh-
Q psy11859 669 TTGLWYPNGQIRSNRFWHYFFVIFTQ--ILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHL-RRH- 744 (851)
Q Consensus 669 t~~~~~~~~~l~~h~~~h~~~~~~~c--~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~-~~H- 744 (851)
++..+.....|..|+..|.+.++|.| ..|++.|.+...|..|+++|.+++||.|..+.|++.|.+...|..|+ +.|
T Consensus 20 C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~ 99 (190)
T 1tf6_A 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHN 99 (190)
T ss_dssp TCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSS
T ss_pred CcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcC
Confidence 34445557788899999999999999 88999999999999999999999999993227999999999999998 677
Q ss_pred cCCCcccc--CccccCccccCchhHHHhhhhcCCCCCccCCC--CCCcccccc
Q psy11859 745 SGERSFKC--DWQDCKWQFSRSDELSRHRRSHFGIKPYPCTL--CVKKSLLAI 793 (851)
Q Consensus 745 ~gekp~~C--~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~--Cgk~f~~~~ 793 (851)
.++++|.| + .|++.|.+...|..|+++|++++||.|+. |++.|....
T Consensus 100 ~~~~~~~C~~~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~ 150 (190)
T 1tf6_A 100 IKICVYVCHFE--NCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPS 150 (190)
T ss_dssp TTTSCCEECSS--SSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHH
T ss_pred CCcceeeCCCC--CCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHH
Confidence 46788999 7 79999999999999999999999999987 999876543
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.84 E-value=9.5e-21 Score=198.13 Aligned_cols=159 Identities=21% Similarity=0.196 Sum_probs=131.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCcc--EEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIG--KVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~--~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
+++|+|||||||||||++|+++|++.| . +|++++|........ ..+++.++.+|
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G---~~~~V~~~~r~~~~~~~~---------------------~~~~~~~~~~D 71 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQG---LFSKVTLIGRRKLTFDEE---------------------AYKNVNQEVVD 71 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHT---CCSEEEEEESSCCCCCSG---------------------GGGGCEEEECC
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCC---CCCEEEEEEcCCCCcccc---------------------ccCCceEEecC
Confidence 578999999999999999999999998 5 899999986542110 01267899999
Q ss_pred CCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCccccc
Q psy11859 294 ILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEE 373 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E 373 (851)
++|++ ++..+++++|+|||+||.......+...+++|+.|+.+++++|++.+ +++||++||..+++.
T Consensus 72 ~~d~~------~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~~~iv~~SS~~~~~~------ 138 (242)
T 2bka_A 72 FEKLD------DYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGG-CKHFNLLSSKGADKS------ 138 (242)
T ss_dssp GGGGG------GGGGGGSSCSEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTT-CCEEEEECCTTCCTT------
T ss_pred cCCHH------HHHHHhcCCCEEEECCCcccccCCcccceeeeHHHHHHHHHHHHHCC-CCEEEEEccCcCCCC------
Confidence 99987 78888899999999999876555677889999999999999998875 889999999876542
Q ss_pred ccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCC-CEEEEecccccCCCCCC
Q psy11859 374 KLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKL-PVVIVRPSIVLPSFQEP 447 (851)
Q Consensus 374 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l-~~~ivRp~~V~G~~~~p 447 (851)
+. +.|+.||+.+|.++... ++ +++++||+.|+|+...+
T Consensus 139 -----~~-----------------------------~~Y~~sK~~~e~~~~~~--~~~~~~~vrpg~v~~~~~~~ 177 (242)
T 2bka_A 139 -----SN-----------------------------FLYLQVKGEVEAKVEEL--KFDRYSVFRPGVLLCDRQES 177 (242)
T ss_dssp -----CS-----------------------------SHHHHHHHHHHHHHHTT--CCSEEEEEECCEEECTTGGG
T ss_pred -----Cc-----------------------------chHHHHHHHHHHHHHhc--CCCCeEEEcCceecCCCCCC
Confidence 22 34999999999998765 57 59999999999997543
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.1e-21 Score=204.69 Aligned_cols=205 Identities=11% Similarity=0.108 Sum_probs=144.0
Q ss_pred CEEEEecCccHHHHHHHHHHHHh-CCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRS-CPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~-g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
|+|||||||||||++|++.|++. + .+|++++|....... + ...+++++.+|++|+
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g---~~V~~~~R~~~~~~~---------------~------~~~~v~~~~~D~~d~ 56 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHI---DHFHIGVRNVEKVPD---------------D------WRGKVSVRQLDYFNQ 56 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTC---TTEEEEESSGGGSCG---------------G------GBTTBEEEECCTTCH
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCC---CcEEEEECCHHHHHH---------------h------hhCCCEEEEcCCCCH
Confidence 57999999999999999999887 5 678999997643210 0 124799999999988
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccCC
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYP 377 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~~ 377 (851)
+ ++..+++++|+|||+|+..... ..|+.++.+++++|++.+ +++||++||..... .
T Consensus 57 ~------~l~~~~~~~d~vi~~a~~~~~~-------~~~~~~~~~l~~aa~~~g-v~~iv~~Ss~~~~~----------~ 112 (289)
T 3e48_A 57 E------SMVEAFKGMDTVVFIPSIIHPS-------FKRIPEVENLVYAAKQSG-VAHIIFIGYYADQH----------N 112 (289)
T ss_dssp H------HHHHHTTTCSEEEECCCCCCSH-------HHHHHHHHHHHHHHHHTT-CCEEEEEEESCCST----------T
T ss_pred H------HHHHHHhCCCEEEEeCCCCccc-------hhhHHHHHHHHHHHHHcC-CCEEEEEcccCCCC----------C
Confidence 6 8999999999999999976532 348999999999999986 99999999942100 1
Q ss_pred CCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhHhhhhcC
Q psy11859 378 SPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDSLNG 457 (851)
Q Consensus 378 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~i~~~~~ 457 (851)
.|. .+...+..+|..+... +++++|+||+.++|+.. .|+..+..
T Consensus 113 ~~~------------------------------~~~~~~~~~e~~~~~~--g~~~~ilrp~~~~~~~~----~~~~~~~~ 156 (289)
T 3e48_A 113 NPF------------------------------HMSPYFGYASRLLSTS--GIDYTYVRMAMYMDPLK----PYLPELMN 156 (289)
T ss_dssp CCS------------------------------TTHHHHHHHHHHHHHH--CCEEEEEEECEESTTHH----HHHHHHHH
T ss_pred CCC------------------------------ccchhHHHHHHHHHHc--CCCEEEEeccccccccH----HHHHHHHH
Confidence 111 1222223455555432 89999999999999743 33333222
Q ss_pred CceEEEEcc---------cCceeEEEeecCC--CCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 458 PVGVLVASG---------KGVVRSMILNDLS--TETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 458 ~~~~~~~~g---------~~v~~~~~~~~~~--~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
......+.| +|+++++...... ..+++||++ + .++|+.|+++.+.+.+|.
T Consensus 157 ~~~~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~~g~~~~~~-~--~~~s~~e~~~~~~~~~g~ 217 (289)
T 3e48_A 157 MHKLIYPAGDGRINYITRNDIARGVIAIIKNPDTWGKRYLLS-G--YSYDMKELAAILSEASGT 217 (289)
T ss_dssp HTEECCCCTTCEEEEECHHHHHHHHHHHHHCGGGTTCEEEEC-C--EEEEHHHHHHHHHHHHTS
T ss_pred CCCEecCCCCceeeeEEHHHHHHHHHHHHcCCCcCCceEEeC-C--CcCCHHHHHHHHHHHHCC
Confidence 222222323 3333333222212 227899999 8 789999999999999986
|
| >2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.2e-22 Score=187.08 Aligned_cols=111 Identities=19% Similarity=0.248 Sum_probs=96.0
Q ss_pred CCCCCCCCceeeeeccceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCc
Q psy11859 675 PNGQIRSNRFWHYFFVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDW 754 (851)
Q Consensus 675 ~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~ 754 (851)
....+..|+.+|+|+++|.|++|++.|.....|..|+++|++++||+| +.|+++|.+.+.|..|+++|++++||.|+
T Consensus 6 k~~h~~h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~- 82 (133)
T 2lt7_A 6 KVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPC--RYCEKVFPLAEYRTKHEIHHTGERRYQCL- 82 (133)
T ss_dssp CCCCSSEEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEEC--SSSSCEESSHHHHHHHHHHHHTCCCEEES-
T ss_pred HHHHHhhceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeC--CccCeecccccchhhhccccCCCccccCC-
Confidence 345567778888999999999999999999999999999999999999 78999999999999999999999999998
Q ss_pred cccCccccCchhHHHhhhhcCCCCC------ccCCCCCCcc
Q psy11859 755 QDCKWQFSRSDELSRHRRSHFGIKP------YPCTLCVKKS 789 (851)
Q Consensus 755 ~~C~k~F~~~~~L~~H~r~H~gekp------~~C~~Cgk~f 789 (851)
.|++.|.+...|..|+++|++++| |.|..|++.|
T Consensus 83 -~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~ 122 (133)
T 2lt7_A 83 -ACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQ 122 (133)
T ss_dssp -SSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSC
T ss_pred -CCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchh
Confidence 899999999999999999887765 5566665543
|
| >2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-21 Score=183.31 Aligned_cols=121 Identities=17% Similarity=0.271 Sum_probs=95.8
Q ss_pred hhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCCC
Q psy11859 707 LIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCV 786 (851)
Q Consensus 707 l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~Cg 786 (851)
+..|..+|+|++||+| ++||++|.+.+.|..|+++|++++||.|+ .|++.|.+...|..|+++|+|++||.|++||
T Consensus 10 ~~h~~~~h~Gek~y~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~--~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~ 85 (133)
T 2lt7_A 10 DDHYELIVDGRVYYIC--IVCKRSYVCLTSLRRHFNIHSWEKKYPCR--YCEKVFPLAEYRTKHEIHHTGERRYQCLACG 85 (133)
T ss_dssp SSEEEEEETTEEEEEE--TTTCCEESCHHHHHHHHHHHHCCSCEECS--SSSCEESSHHHHHHHHHHHHTCCCEEESSSC
T ss_pred HhhceeecCCCcCeEC--CCCCCCcCCHHHHHHHHHHcCCCCCeeCC--ccCeecccccchhhhccccCCCccccCCCCC
Confidence 4567889999999999 89999999999999999999999999998 8999999999999999999999999999999
Q ss_pred CccccccccCCcccccCcccccccccCCCCCCccCh--HHHHHHHHhhcCCc
Q psy11859 787 KKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCK--RHLAKHLKVHERQK 836 (851)
Q Consensus 787 k~f~~~~~~~~H~~~C~k~f~~~~~~~~~~~pf~Ck--~~L~~H~r~Htgek 836 (851)
+.|..+..|..|...... .......++|.|. ..+..|+++|++||
T Consensus 86 k~F~~~~~L~~H~~~hh~-----~~p~~~~k~~~C~~C~k~~~~~~~h~~ek 132 (133)
T 2lt7_A 86 KSFINYQFMSSHIKSVHS-----QDPSGDSKLYRLHPCRSLQIRQYAYLSDR 132 (133)
T ss_dssp CEESSHHHHHHHHHHHTC-----CCTTSSSCCEEECCCCSSCCCCCHHHHCC
T ss_pred CCcCCHHHHHHHhHHhcC-----CCCCCCCCCeecCCCCchhhhcccccccC
Confidence 999888777666421100 0011123344442 12445667777765
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-20 Score=190.65 Aligned_cols=153 Identities=18% Similarity=0.193 Sum_probs=122.1
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+|+|||||||||||++|+++|++.| .+|++++|...... .....+++++.+|++|+
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g---~~V~~~~r~~~~~~---------------------~~~~~~~~~~~~D~~~~ 58 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAG---YEVTVLVRDSSRLP---------------------SEGPRPAHVVVGDVLQA 58 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCGGGSC---------------------SSSCCCSEEEESCTTSH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC---CeEEEEEeChhhcc---------------------cccCCceEEEEecCCCH
Confidence 4899999999999999999999998 78999999754310 00134789999999987
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccCC
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYP 377 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~~ 377 (851)
+ ++..+++++|+|||+|+...... ..++|+.++.+++++|++.+ +++||++||..+++..... +
T Consensus 59 ~------~~~~~~~~~d~vi~~a~~~~~~~----~~~~n~~~~~~~~~~~~~~~-~~~~v~~Ss~~~~~~~~~~-----~ 122 (206)
T 1hdo_A 59 A------DVDKTVAGQDAVIVLLGTRNDLS----PTTVMSEGARNIVAAMKAHG-VDKVVACTSAFLLWDPTKV-----P 122 (206)
T ss_dssp H------HHHHHHTTCSEEEECCCCTTCCS----CCCHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTSCTTCS-----C
T ss_pred H------HHHHHHcCCCEEEECccCCCCCC----ccchHHHHHHHHHHHHHHhC-CCeEEEEeeeeeccCcccc-----c
Confidence 6 88889999999999999765422 12589999999999999885 8999999998777643210 0
Q ss_pred CCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEeccccc
Q psy11859 378 SPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVL 441 (851)
Q Consensus 378 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~ 441 (851)
.+ .+.|+.+|+.+|.++.. .+++++++||+.++
T Consensus 123 ~~-----------------------------~~~y~~~K~~~e~~~~~--~~i~~~~lrp~~~~ 155 (206)
T 1hdo_A 123 PR-----------------------------LQAVTDDHIRMHKVLRE--SGLKYVAVMPPHIG 155 (206)
T ss_dssp GG-----------------------------GHHHHHHHHHHHHHHHH--TCSEEEEECCSEEE
T ss_pred cc-----------------------------chhHHHHHHHHHHHHHh--CCCCEEEEeCCccc
Confidence 01 24599999999999864 48999999999983
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-20 Score=202.08 Aligned_cols=216 Identities=15% Similarity=0.066 Sum_probs=152.0
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+|+|||||||||||++|++.|++.|. .+|++++|...... .+.+ . ..+++++.+|++|+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~~V~~~~R~~~~~~-~~~l------------~------~~~~~~~~~D~~d~ 63 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGT--FKVRVVTRNPRKKA-AKEL------------R------LQGAEVVQGDQDDQ 63 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCS--SEEEEEESCTTSHH-HHHH------------H------HTTCEEEECCTTCH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCC--ceEEEEEcCCCCHH-HHHH------------H------HCCCEEEEecCCCH
Confidence 57999999999999999999999863 58999999754310 1111 1 12688999999988
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccCC
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYP 377 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~~ 377 (851)
+ ++..+++++|+|||+|+.... .....|+.++.+++++|++.+ +++||++||..+++.. +.
T Consensus 64 ~------~l~~~~~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~~~aa~~~g-v~~iv~~S~~~~~~~~----~~--- 124 (299)
T 2wm3_A 64 V------IMELALNGAYATFIVTNYWES-----CSQEQEVKQGKLLADLARRLG-LHYVVYSGLENIKKLT----AG--- 124 (299)
T ss_dssp H------HHHHHHTTCSEEEECCCHHHH-----TCHHHHHHHHHHHHHHHHHHT-CSEEEECCCCCHHHHT----TT---
T ss_pred H------HHHHHHhcCCEEEEeCCCCcc-----ccchHHHHHHHHHHHHHHHcC-CCEEEEEcCccccccC----CC---
Confidence 6 888999999999999985311 124578999999999999885 8999998886554311 00
Q ss_pred CCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhHhhh-hc
Q psy11859 378 SPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDS-LN 456 (851)
Q Consensus 378 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~i~~-~~ 456 (851)
.+ ++.|+.+|+.+|.++.+. +++++++||+.++|+... .|... ..
T Consensus 125 ~~-----------------------------~~~y~~sK~~~e~~~~~~--gi~~~ilrp~~~~~~~~~---~~~~~~~~ 170 (299)
T 2wm3_A 125 RL-----------------------------AAAHFDGKGEVEEYFRDI--GVPMTSVRLPCYFENLLS---HFLPQKAP 170 (299)
T ss_dssp SC-----------------------------CCHHHHHHHHHHHHHHHH--TCCEEEEECCEEGGGGGT---TTCCEECT
T ss_pred cc-----------------------------cCchhhHHHHHHHHHHHC--CCCEEEEeecHHhhhchh---hcCCcccC
Confidence 11 345999999999999764 799999999999997532 12222 11
Q ss_pred CCce-----------EEEEcccCceeEEEeecCC---CCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 457 GPVG-----------VLVASGKGVVRSMILNDLS---TETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 457 ~~~~-----------~~~~~g~~v~~~~~~~~~~---~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
.+.. .-+...+|+++++...... ..+++||+++ .++|+.|+++.+.+.+|.
T Consensus 171 ~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~~g~~~~~~g---~~~s~~e~~~~~~~~~g~ 235 (299)
T 2wm3_A 171 DGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKMPEKYVGQNIGLST---CRHTAEEYAALLTKHTRK 235 (299)
T ss_dssp TSSSEEECCCCTTSCEEEECGGGHHHHHHHHHHSHHHHTTCEEECCS---EEECHHHHHHHHHHHHSS
T ss_pred CCCEEEEEecCCCCccceecHHHHHHHHHHHHcChhhhCCeEEEeee---ccCCHHHHHHHHHHHHCC
Confidence 1111 1111222333332221112 1467999974 369999999999999886
|
| >2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-21 Score=187.05 Aligned_cols=131 Identities=27% Similarity=0.409 Sum_probs=115.0
Q ss_pred cceeecCCccccchhhhhhhccc---ccCCccccccc---CCccCccccChhhHHHHHhhhcCCCccccCccccCccccC
Q psy11859 690 VIFTQILPAYLVDFIMVLIRQKT---FENLVRTFQCT---YPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSR 763 (851)
Q Consensus 690 ~~~~c~~c~~~~~~~~~l~~h~~---~h~~~r~~~C~---~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~ 763 (851)
.+|.|+.|++.|.+...|..|++ +|++++||.|. |+.|++.|.+...|..|++.|++++||.|....|++.|.+
T Consensus 2 ~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~ 81 (155)
T 2gli_A 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSR 81 (155)
T ss_dssp CBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSS
T ss_pred CcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccC
Confidence 47899999999999999999987 89999999995 3455699999999999999999999999962149999999
Q ss_pred chhHHHhhhhcCCCCCccCCC--CCCccccccccCCcccccCcccccccccCCCCCCccChHHHHHHH-HhhcCCcchhh
Q psy11859 764 SDELSRHRRSHFGIKPYPCTL--CVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHL-KVHERQKYKMM 840 (851)
Q Consensus 764 ~~~L~~H~r~H~gekp~~C~~--Cgk~f~~~~~~~~H~~~C~k~f~~~~~~~~~~~pf~Ck~~L~~H~-r~Htgek~~~C 840 (851)
...|..|+++|++++||.|+. |++.|... ..|..|+ ++|++++||.|
T Consensus 82 ~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~------------------------------~~L~~H~~~~H~~~~~~~C 131 (155)
T 2gli_A 82 LENLKTHLRSHTGEKPYMCEHEGCSKAFSNA------------------------------SDRAKHQNRTHSNEKPYVC 131 (155)
T ss_dssp HHHHHHHHHHTTTCCCEECCSTTCCCEESSS------------------------------STTHHHHHHTTCSCCCEEC
T ss_pred HHHHHHHHHHcCCCCCeeCCCCCCCCccCCH------------------------------HHHHHHHHHhcCCCCCeeC
Confidence 999999999999999999998 88866432 2688998 88999999999
Q ss_pred hh--hHHhhhcC
Q psy11859 841 MK--SMRKMKNK 850 (851)
Q Consensus 841 ~~--c~~~f~~k 850 (851)
.. ||+.|+++
T Consensus 132 ~~~~C~~~f~~~ 143 (155)
T 2gli_A 132 KLPGCTKRYTDP 143 (155)
T ss_dssp CSTTTCCEESSH
T ss_pred CCCCCccccCCH
Confidence 88 99999764
|
| >2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-20 Score=181.81 Aligned_cols=125 Identities=25% Similarity=0.376 Sum_probs=113.0
Q ss_pred ceeeeeccceeecCCccccchhhhhhhcccc-cCCccc--------ccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 683 RFWHYFFVIFTQILPAYLVDFIMVLIRQKTF-ENLVRT--------FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 683 ~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~-h~~~r~--------~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
...+....+|.|..|++.|.+...|..|++. |.++++ |.| +.|++.|.+...|..|+++|++++||.|.
T Consensus 17 ~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~ 94 (155)
T 2rpc_A 17 KWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEEC--PREGKSFKAKYKLVNHIRVHTGEKPFPCP 94 (155)
T ss_dssp CBCCTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTC--TTSSCCCSSHHHHHHHTHHHHCCCSEECS
T ss_pred EeechhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCC--CCcccccCCHHHHHHHHHhcCCCCcccCC
Confidence 3445667889999999999999999999887 888766 889 89999999999999999999999999997
Q ss_pred ccc--cCccccCchhHHHhhhhcCCCCCccCCC--CCCccccccccCCcccccCcccccccccCCCCCCccChHHHHHHH
Q psy11859 754 WQD--CKWQFSRSDELSRHRRSHFGIKPYPCTL--CVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHL 829 (851)
Q Consensus 754 ~~~--C~k~F~~~~~L~~H~r~H~gekp~~C~~--Cgk~f~~~~~~~~H~~~C~k~f~~~~~~~~~~~pf~Ck~~L~~H~ 829 (851)
. |++.|.+...|.+|+++|++++||.|+. |++.|.. +..|..|+
T Consensus 95 --~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~------------------------------~~~L~~H~ 142 (155)
T 2rpc_A 95 --FPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFAN------------------------------SSDRKKHM 142 (155)
T ss_dssp --CTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSS------------------------------HHHHHHSS
T ss_pred --cCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCC------------------------------HHHHHHHH
Confidence 6 9999999999999999999999999996 8886643 35899999
Q ss_pred HhhcCCcchhhh
Q psy11859 830 KVHERQKYKMMM 841 (851)
Q Consensus 830 r~Htgek~~~C~ 841 (851)
++|+++|||.|.
T Consensus 143 ~~H~~~k~~~c~ 154 (155)
T 2rpc_A 143 HVHTSDKSGPSS 154 (155)
T ss_dssp TTTTSCCCSCSC
T ss_pred HHhcCCCCCCCC
Confidence 999999999985
|
| >1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.2e-21 Score=191.28 Aligned_cols=148 Identities=23% Similarity=0.308 Sum_probs=125.9
Q ss_pred eeccceee--cCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCc
Q psy11859 687 YFFVIFTQ--ILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRS 764 (851)
Q Consensus 687 ~~~~~~~c--~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~ 764 (851)
...++|.| ..|++.|.+...|..|+++|++++||.|.++.|++.|.+...|..|+++|++++||.|....|++.|.+.
T Consensus 8 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~ 87 (190)
T 1tf6_A 8 VVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTK 87 (190)
T ss_dssp --CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCH
T ss_pred CCCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCH
Confidence 45678999 6899999999999999999999999999656799999999999999999999999999522599999999
Q ss_pred hhHHHhh-hhc-CCCCCccC--CCCCCccccccccC----Ccc-------cc--cCcccccccccCCCCCCccChHHHHH
Q psy11859 765 DELSRHR-RSH-FGIKPYPC--TLCVKKSLLAILNC----PHE-------AE--CTPTFKHRAEKTSTPGPSMCKRHLAK 827 (851)
Q Consensus 765 ~~L~~H~-r~H-~gekp~~C--~~Cgk~f~~~~~~~----~H~-------~~--C~k~f~~~~~~~~~~~pf~Ck~~L~~ 827 (851)
..|..|+ +.| .++++|.| +.||+.|.....|. .|. .. |++.|.. +..|..
T Consensus 88 ~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~-------------~~~L~~ 154 (190)
T 1tf6_A 88 ANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSL-------------PSRLKR 154 (190)
T ss_dssp HHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSS-------------HHHHHH
T ss_pred HHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcC-------------HHHHHH
Confidence 9999999 778 57899999 89999997665444 343 23 6666655 569999
Q ss_pred HHHhhcCCcchhhhh---hHHhhhcC
Q psy11859 828 HLKVHERQKYKMMMK---SMRKMKNK 850 (851)
Q Consensus 828 H~r~Htgek~~~C~~---c~~~f~~k 850 (851)
|+++|+| |.|.. |++.|+.+
T Consensus 155 H~~~H~~---~~C~~~~~C~~~f~~~ 177 (190)
T 1tf6_A 155 HEKVHAG---YPCKKDDSCSFVGKTW 177 (190)
T ss_dssp HHTSSCS---CCCCSTTTCCCCCSCH
T ss_pred HHHHhCC---CcCCCCCcCCCccccH
Confidence 9999999 77888 99999864
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-19 Score=200.04 Aligned_cols=216 Identities=14% Similarity=0.092 Sum_probs=149.1
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC-CC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD-IL 295 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD-i~ 295 (851)
.+|+|||||||||||++|++.|++.| .+|++++|..... ..+.+ . ...+++++.+| ++
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~-~~~~l------------~-----~~~~v~~v~~D~l~ 62 (352)
T 1xgk_A 4 QKKTIAVVGATGRQGASLIRVAAAVG---HHVRAQVHSLKGL-IAEEL------------Q-----AIPNVTLFQGPLLN 62 (352)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTT---CCEEEEESCSCSH-HHHHH------------H-----TSTTEEEEESCCTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC---CEEEEEECCCChh-hHHHH------------h-----hcCCcEEEECCccC
Confidence 36889999999999999999999987 6789999976541 00111 1 01368899999 99
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCccccccc
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKL 375 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~ 375 (851)
|++ ++..+++++|+|||+|+.... ..|+.+ ++++++|++.+++++|||+||.++.. ..
T Consensus 63 d~~------~l~~~~~~~d~Vi~~a~~~~~--------~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~~----~~--- 120 (352)
T 1xgk_A 63 NVP------LMDTLFEGAHLAFINTTSQAG--------DEIAIG-KDLADAAKRAGTIQHYIYSSMPDHSL----YG--- 120 (352)
T ss_dssp CHH------HHHHHHTTCSEEEECCCSTTS--------CHHHHH-HHHHHHHHHHSCCSEEEEEECCCGGG----TS---
T ss_pred CHH------HHHHHHhcCCEEEEcCCCCCc--------HHHHHH-HHHHHHHHHcCCccEEEEeCCccccc----cC---
Confidence 876 888899999999999986421 347777 99999999874489999999975210 00
Q ss_pred CCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCC--chhHhh
Q psy11859 376 YPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEP--VPGWVD 453 (851)
Q Consensus 376 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p--~p~~i~ 453 (851)
+.+ ++.|+.||+.+|+++... +++++|+||+ +||++... .+.+..
T Consensus 121 -~~~-----------------------------~~~y~~sK~~~E~~~~~~--gi~~~ivrpg-~~g~~~~~~~~~~~~~ 167 (352)
T 1xgk_A 121 -PWP-----------------------------AVPMWAPKFTVENYVRQL--GLPSTFVYAG-IYNNNFTSLPYPLFQM 167 (352)
T ss_dssp -SCC-----------------------------CCTTTHHHHHHHHHHHTS--SSCEEEEEEC-EEGGGCBSSSCSSCBE
T ss_pred -CCC-----------------------------CccHHHHHHHHHHHHHHc--CCCEEEEecc-eecCCchhcccccccc
Confidence 011 355999999999999764 8999999987 68876532 122211
Q ss_pred h-hcCCceEE--EEcccCceeEEEe----------ecCCC----CccEEEEeCCCCccccHHHHHHHHHHHhhcC
Q psy11859 454 S-LNGPVGVL--VASGKGVVRSMIL----------NDLST----ETQVFNISSNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 454 ~-~~~~~~~~--~~~g~~v~~~~~~----------~~~~~----~~~iyni~~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
. ...+.... .+.+.+....+.. ..... .+++||+++ .++|+.|+++.+.+..|..
T Consensus 168 ~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ai~~~l~~~~~~~~g~~~~l~~---~~~s~~e~~~~i~~~~G~~ 239 (352)
T 1xgk_A 168 ELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQKWNGHRIALTF---ETLSPVQVCAAFSRALNRR 239 (352)
T ss_dssp EECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCHHHHTTCEEEECS---EEECHHHHHHHHHHHHTSC
T ss_pred cccCCCceEEeeccCCCCceeeEecHHHHHHHHHHHHhCCchhhCCeEEEEec---CCCCHHHHHHHHHHHHCCC
Confidence 1 12222211 2223333222221 11121 478999984 3599999999999999863
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-19 Score=197.00 Aligned_cols=226 Identities=17% Similarity=0.191 Sum_probs=148.3
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
.|+|||||||||||++|++.|++.| ..|++++|...+..+. +...+ ..+. ..+++++.+|++|+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~-~~~~~------~~~~------~~~~~~~~~D~~d~ 67 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLG---HPTYVLFRPEVVSNID-KVQML------LYFK------QLGAKLIEASLDDH 67 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT---CCEEEECCSCCSSCHH-HHHHH------HHHH------TTTCEEECCCSSCH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC---CcEEEEECCCcccchh-HHHHH------HHHH------hCCeEEEeCCCCCH
Confidence 4789999999999999999999998 6789999986543221 11111 0010 13789999999988
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccCC
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYP 377 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~~ 377 (851)
+ ++..+++++|+|||+|+..... .|+.++.+++++|++.+++++||+ | .|+..... . ....
T Consensus 68 ~------~l~~~~~~~d~vi~~a~~~~~~--------~~~~~~~~l~~aa~~~g~v~~~v~-S-~~g~~~~~-~--~~~~ 128 (313)
T 1qyd_A 68 Q------RLVDALKQVDVVISALAGGVLS--------HHILEQLKLVEAIKEAGNIKRFLP-S-EFGMDPDI-M--EHAL 128 (313)
T ss_dssp H------HHHHHHTTCSEEEECCCCSSSS--------TTTTTHHHHHHHHHHSCCCSEEEC-S-CCSSCTTS-C--CCCC
T ss_pred H------HHHHHHhCCCEEEECCccccch--------hhHHHHHHHHHHHHhcCCCceEEe-c-CCcCCccc-c--ccCC
Confidence 6 8889999999999999976542 388999999999999855899986 3 33211111 1 0111
Q ss_pred CCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhHh--hhh
Q psy11859 378 SPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWV--DSL 455 (851)
Q Consensus 378 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~i--~~~ 455 (851)
.|. .+.| .+|+.+|.++++ .+++++++||+.++|.....+.... ...
T Consensus 129 ~p~----------------------------~~~y-~sK~~~e~~~~~--~g~~~~ilrp~~~~~~~~~~~~~~~~~~~~ 177 (313)
T 1qyd_A 129 QPG----------------------------SITF-IDKRKVRRAIEA--ASIPYTYVSSNMFAGYFAGSLAQLDGHMMP 177 (313)
T ss_dssp SST----------------------------THHH-HHHHHHHHHHHH--TTCCBCEEECCEEHHHHTTTSSCTTCCSSC
T ss_pred CCC----------------------------cchH-HHHHHHHHHHHh--cCCCeEEEEeceeccccccccccccccccC
Confidence 111 1348 999999999975 3799999999998875322111110 001
Q ss_pred cCC---------ceEEEEcccCceeEEEeecCC--CCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 456 NGP---------VGVLVASGKGVVRSMILNDLS--TETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 456 ~~~---------~~~~~~~g~~v~~~~~~~~~~--~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
.++ ....+...+|+++++...... ..+++|+++++. +++|+.|+++.+.+..|.
T Consensus 178 ~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~~~~~~~~~g~~-~~~s~~e~~~~~~~~~g~ 242 (313)
T 1qyd_A 178 PRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRPPM-NILSQKEVIQIWERLSEQ 242 (313)
T ss_dssp CSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCGGGSSSEEECCCGG-GEEEHHHHHHHHHHHHTC
T ss_pred CCCeEEEeCCCCceEEEEEHHHHHHHHHHHHhCcccCCceEEEeCCC-CccCHHHHHHHHHHhcCC
Confidence 111 112222223444333322222 235677776432 579999999999999986
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-19 Score=193.13 Aligned_cols=228 Identities=16% Similarity=0.157 Sum_probs=158.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|.... .+.+. +.+ + ...++.++.+|++
T Consensus 14 l~~k~vlITGasggiG~~~a~~l~~~G---~~V~~~~r~~~~---~~~~~--------~~~----~-~~~~~~~~~~D~~ 74 (278)
T 2bgk_A 14 LQDKVAIITGGAGGIGETTAKLFVRYG---AKVVIADIADDH---GQKVC--------NNI----G-SPDVISFVHCDVT 74 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHH--------HHH----C-CTTTEEEEECCTT
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEcCChhH---HHHHH--------HHh----C-CCCceEEEECCCC
Confidence 578999999999999999999999998 688998885321 11111 111 1 1127899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc---------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL---------EAELKENVAANTRGTQRLLDIALKM---KKLVAF 356 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~---------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~f 356 (851)
|++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++... .+..++
T Consensus 75 ~~~------~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~i 148 (278)
T 2bgk_A 75 KDE------DVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSI 148 (278)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeE
Confidence 876 6666654 79999999997532 1456788999999999999998763 236799
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh-----CCCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK-----TKLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~-----~~l~ 431 (851)
|++||..++... +.+. ..|+.||+..|.+++.++ .+++
T Consensus 149 v~isS~~~~~~~--------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~ 191 (278)
T 2bgk_A 149 VFTASISSFTAG--------EGVS-----------------------------HVYTATKHAVLGLTTSLCTELGEYGIR 191 (278)
T ss_dssp EEECCGGGTCCC--------TTSC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEeeccccCCC--------CCCC-----------------------------cchHHHHHHHHHHHHHHHHHHhhcCcE
Confidence 999997665321 0112 349999999999987764 2899
Q ss_pred EEEEecccccCCCCCCc----hhHhhhhcC--Cce-EEEEcccCceeEEEeecC----CCCccEEEEeCCCCccccHHHH
Q psy11859 432 VVIVRPSIVLPSFQEPV----PGWVDSLNG--PVG-VLVASGKGVVRSMILNDL----STETQVFNISSNEVEAITWGEI 500 (851)
Q Consensus 432 ~~ivRp~~V~G~~~~p~----p~~i~~~~~--~~~-~~~~~g~~v~~~~~~~~~----~~~~~iyni~~~~~~~~t~~el 500 (851)
++++|||.|+++..... +.+.+.+.. +.+ ..+....++++++..... ...|++|++++| ..+++.|+
T Consensus 192 v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg--~~~~~~e~ 269 (278)
T 2bgk_A 192 VNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGG--YTRTNPAF 269 (278)
T ss_dssp EEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCSSCSCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT--GGGCCTHH
T ss_pred EEEEEeceecchhhhhhcccchhHHHHhhhcccccccccCCHHHHHHHHHHHcCcccccCCCCEEEECCc--ccccCCcc
Confidence 99999999999865431 223322111 000 011223455554433221 235889999998 67899999
Q ss_pred HHHHHHH
Q psy11859 501 ISRGKQL 507 (851)
Q Consensus 501 ~~~~~~~ 507 (851)
++.+.+.
T Consensus 270 ~~~i~~~ 276 (278)
T 2bgk_A 270 PTALKHG 276 (278)
T ss_dssp HHHSCSC
T ss_pred chhhhhh
Confidence 8877543
|
| >1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.6e-20 Score=171.06 Aligned_cols=119 Identities=27% Similarity=0.385 Sum_probs=100.6
Q ss_pred eccceeec--CCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCch
Q psy11859 688 FFVIFTQI--LPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSD 765 (851)
Q Consensus 688 ~~~~~~c~--~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~ 765 (851)
+.++|.|. .|++.|.+...|..|+++| ++++|.| +.|++.|.+...|..|+++|++++||.|....|++.|.+..
T Consensus 2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~ 78 (124)
T 1ubd_C 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVC--AECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDF 78 (124)
T ss_dssp ---CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEEC--TTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHH
T ss_pred CCCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeEC--CCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHH
Confidence 45789999 8999999999999999999 8899999 89999999999999999999999999996114999999999
Q ss_pred hHHHhhhhcCCCCCccCC--CCCCccccccccCCcccccCcccccccccCCCCCCccChHHHHHHHHhhcCCcchh
Q psy11859 766 ELSRHRRSHFGIKPYPCT--LCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVHERQKYKM 839 (851)
Q Consensus 766 ~L~~H~r~H~gekp~~C~--~Cgk~f~~~~~~~~H~~~C~k~f~~~~~~~~~~~pf~Ck~~L~~H~r~Htgek~~~ 839 (851)
.|..|+++|++++||.|+ .|++.|.. +..|..|+++|+++|+++
T Consensus 79 ~l~~H~~~h~~~~~~~C~~~~C~~~f~~------------------------------~~~L~~H~~~H~~~k~~q 124 (124)
T 1ubd_C 79 NLRTHVRIHTGDRPYVCPFDGCNKKFAQ------------------------------STNLKSHILTHAKAKNNQ 124 (124)
T ss_dssp HHHHHHHHHHCCCCCCCCSTTCCCCCSS------------------------------TTTTHHHHHHHC------
T ss_pred HHHHHHHHhCCCCceECCCCCCCCccCC------------------------------HHHHHHHHHHHcccccCC
Confidence 999999999999999996 58886643 237999999999999763
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-19 Score=191.01 Aligned_cols=217 Identities=12% Similarity=0.143 Sum_probs=149.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.++ .+.+.. ...++.++.+|++
T Consensus 9 ~~~~~vlVtGasggiG~~la~~l~~~G---~~V~~~~r~~~------~~~~~-----~~~~~~----~~~~~~~~~~D~~ 70 (255)
T 1fmc_A 9 LDGKCAIITGAGAGIGKEIAITFATAG---ASVVVSDINAD------AANHV-----VDEIQQ----LGGQAFACRCDIT 70 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTT---CEEEEEESCHH------HHHHH-----HHHHHH----TTCCEEEEECCTT
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCC---CEEEEEcCCHH------HHHHH-----HHHHHH----hCCceEEEEcCCC
Confidence 578999999999999999999999998 68999998642 11111 111211 1247889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEe
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHF 359 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~v 359 (851)
|++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++... .+..++|++
T Consensus 71 ~~~------~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~ 144 (255)
T 1fmc_A 71 SEQ------ELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTI 144 (255)
T ss_dssp CHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 876 6666654 89999999997543 2456788999999999999988531 136899999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..++.. ..+. ..|+.||+..|.+++.++. ++++.+
T Consensus 145 sS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~ 186 (255)
T 1fmc_A 145 TSMAAENK---------NINM-----------------------------TSYASSKAAASHLVRNMAFDLGEKNIRVNG 186 (255)
T ss_dssp CCGGGTCC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHHTTTEEEEE
T ss_pred cchhhcCC---------CCCC-----------------------------cccHHHHHHHHHHHHHHHHHhhhcCcEEEE
Confidence 99765432 1122 3499999999999877642 899999
Q ss_pred EecccccCCCCC--CchhHhhhhcCCceE-EEEcccCceeEEEeecC----CCCccEEEEeCCCCcccc
Q psy11859 435 VRPSIVLPSFQE--PVPGWVDSLNGPVGV-LVASGKGVVRSMILNDL----STETQVFNISSNEVEAIT 496 (851)
Q Consensus 435 vRp~~V~G~~~~--p~p~~i~~~~~~~~~-~~~~g~~v~~~~~~~~~----~~~~~iyni~~~~~~~~t 496 (851)
+|||.|+++... ..|.+...+....+. .++...|+++++..... ...|++||+++| .++|
T Consensus 187 v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg--~~~s 253 (255)
T 1fmc_A 187 IAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDIANAALFLCSPAASWVSGQILTVSGG--GVQE 253 (255)
T ss_dssp EEECSBCSHHHHTTCCHHHHHHHHHTCSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT--SCCC
T ss_pred EecccCcchhhhhccChHHHHHHHhcCCcccCCCHHHHHHHHHHHhCCccccCCCcEEEECCc--eecc
Confidence 999999987532 234444433222111 12334555554433222 135789999988 4444
|
| >2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.9e-20 Score=169.04 Aligned_cols=103 Identities=30% Similarity=0.524 Sum_probs=96.0
Q ss_pred eeccceeecC--CccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCc
Q psy11859 687 YFFVIFTQIL--PAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRS 764 (851)
Q Consensus 687 ~~~~~~~c~~--c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~ 764 (851)
++.++|.|.. |++.|.+...|..|+++|.+++||+|.++.|++.|.+...|..|+++|++++||.|+ .|++.|.+.
T Consensus 2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~ 79 (119)
T 2jp9_A 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCK--TCQRKFSRS 79 (119)
T ss_dssp CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECT--TTCCEESCH
T ss_pred CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCC--ccCchhCCH
Confidence 4678999997 999999999999999999999999994338999999999999999999999999998 899999999
Q ss_pred hhHHHhhhhcCCCCCccC--CCCCCcccc
Q psy11859 765 DELSRHRRSHFGIKPYPC--TLCVKKSLL 791 (851)
Q Consensus 765 ~~L~~H~r~H~gekp~~C--~~Cgk~f~~ 791 (851)
..|..|+++|++++||.| +.||+.|..
T Consensus 80 ~~l~~H~~~h~~~~~~~C~~~~C~~~f~~ 108 (119)
T 2jp9_A 80 DHLKTHTRTHTGEKPFSCRWPSCQKKFAR 108 (119)
T ss_dssp HHHHHHHHHHHTCCCEECCSTTCCCEESS
T ss_pred HHHHHHHHHhcCCCCeeCCCCCCccccCC
Confidence 999999999999999999 789887644
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-20 Score=197.51 Aligned_cols=175 Identities=17% Similarity=0.100 Sum_probs=125.4
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++++++|++.| .+|++++|...... . .+.+|+++++
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g---~~V~~~~r~~~~~~--------------------------~--~~~~D~~~~~ 50 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAG---HTVIGIDRGQADIE--------------------------A--DLSTPGGRET 50 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSSSSEE--------------------------C--CTTSHHHHHH
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCC---CEEEEEeCChhHcc--------------------------c--cccCCcccHH
Confidence 589999999999999999999998 78999999754310 0 1568888765
Q ss_pred CCCCHHHHHHHhc----CccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEeeeeeeeCCCc--
Q psy11859 299 LGIKDSDLLMLQE----EVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKM---KKLVAFIHFSTAFCHPDQK-- 369 (851)
Q Consensus 299 lgls~~~~~~~~~----~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~vSTa~~~~~~~-- 369 (851)
++..+++ ++|+|||+||......++...+++|+.|+.++++++... .+..+||++||..+++...
T Consensus 51 ------~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~ 124 (255)
T 2dkn_A 51 ------AVAAVLDRCGGVLDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAE 124 (255)
T ss_dssp ------HHHHHHHHHTTCCSEEEECCCCCTTSSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGG
T ss_pred ------HHHHHHHHcCCCccEEEECCCCCCcchhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccc
Confidence 6666665 899999999987645668899999999999999988764 2368999999988775431
Q ss_pred -ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh-----CCCCEEEEecccccCC
Q psy11859 370 -VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK-----TKLPVVIVRPSIVLPS 443 (851)
Q Consensus 370 -~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~-----~~l~~~ivRp~~V~G~ 443 (851)
+..|. ....+++......... ....+.|+.||+.+|.+++.++ .+++++++||+.|+|+
T Consensus 125 ~~~~~~--------------~~~~~~~~~~~~~~~~-~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~ 189 (255)
T 2dkn_A 125 LPMVEA--------------MLAGDEARAIELAEQQ-GQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETP 189 (255)
T ss_dssp CHHHHH--------------HHHTCHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSH
T ss_pred cchhhh--------------hcccchhhhhhhcccc-CCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccch
Confidence 11111 0011111100000000 0112569999999999998764 3899999999999997
Q ss_pred CC
Q psy11859 444 FQ 445 (851)
Q Consensus 444 ~~ 445 (851)
..
T Consensus 190 ~~ 191 (255)
T 2dkn_A 190 LL 191 (255)
T ss_dssp HH
T ss_pred hh
Confidence 53
|
| >2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-19 Score=167.45 Aligned_cols=116 Identities=26% Similarity=0.369 Sum_probs=106.0
Q ss_pred eeccceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhh---hcCCCccccCccccCccccC
Q psy11859 687 YFFVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRR---HSGERSFKCDWQDCKWQFSR 763 (851)
Q Consensus 687 ~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~---H~gekp~~C~~~~C~k~F~~ 763 (851)
++.++|.|..|++.|.+...|..|+++|.+++||+| +.|++.|.+...|..|++. |.++++|.|+ .|++.|.+
T Consensus 3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~--~C~~~f~~ 78 (124)
T 2dlq_A 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFEC--PKCGKCYFRKENLLEHEARNCMNRSEQVFTCS--VCQETFRR 78 (124)
T ss_dssp CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBC--TTTCCBCSSHHHHHHHHHHCCCCSCCCCEECS--SSCCEESS
T ss_pred CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeEC--CCCCchhcCHHHHHHHHhhhhcCCCCCCeECC--CCCCccCC
Confidence 457889999999999999999999999999999999 8899999999999999985 6789999998 89999999
Q ss_pred chhHHHhhhhcCCCCCccCCCCCCccccccccCCcccccCcccccccccCCCCCCccChHHHHHHHH-hhcCCc
Q psy11859 764 SDELSRHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLK-VHERQK 836 (851)
Q Consensus 764 ~~~L~~H~r~H~gekp~~C~~Cgk~f~~~~~~~~H~~~C~k~f~~~~~~~~~~~pf~Ck~~L~~H~r-~Htgek 836 (851)
...|..|+++|++++||.|+.|++.|.. +..|..|++ .|++++
T Consensus 79 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~------------------------------~~~l~~H~~~~H~~~~ 122 (124)
T 2dlq_A 79 RMELRLHMVSHTGEMPYKCSSCSQQFMQ------------------------------KKDLQSHMIKLHSGPS 122 (124)
T ss_dssp HHHHHHHHHHHSSSCSEECSSSCCEESS------------------------------HHHHHHHHHHTSSCSS
T ss_pred HHHHHHHHHHcCCCCCccCCCccchhCC------------------------------HHHHHHHHHHHCCCCC
Confidence 9999999999999999999999997644 348999987 687764
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=188.03 Aligned_cols=219 Identities=16% Similarity=0.213 Sum_probs=144.2
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC-CCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK-RGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~-~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
+|+|||||||||||++|++.|++.| ..|++++|.. ....+.++...+ ..+. ..+++++.+|++|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~~~~~~~~------~~l~------~~~v~~v~~D~~d 66 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAG---NPTYALVRKTITAANPETKEELI------DNYQ------SLGVILLEGDIND 66 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHT---CCEEEEECCSCCSSCHHHHHHHH------HHHH------HTTCEEEECCTTC
T ss_pred CcEEEEECCCchHHHHHHHHHHhCC---CcEEEEECCCcccCChHHHHHHH------HHHH------hCCCEEEEeCCCC
Confidence 5789999999999999999999998 6788999986 322220222111 0111 1368899999998
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccC
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLY 376 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~ 376 (851)
++ ++..+++++|+|||+|+... +.++.+++++|++.+++++||+ | .|+.. .+|...
T Consensus 67 ~~------~l~~~~~~~d~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~-S-~~g~~----~~~~~~ 122 (307)
T 2gas_A 67 HE------TLVKAIKQVDIVICAAGRLL------------IEDQVKIIKAIKEAGNVKKFFP-S-EFGLD----VDRHDA 122 (307)
T ss_dssp HH------HHHHHHTTCSEEEECSSSSC------------GGGHHHHHHHHHHHCCCSEEEC-S-CCSSC----TTSCCC
T ss_pred HH------HHHHHHhCCCEEEECCcccc------------cccHHHHHHHHHhcCCceEEee-c-ccccC----cccccC
Confidence 86 88999999999999999754 5678899999998855899984 3 33211 112111
Q ss_pred CCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhHhhh--
Q psy11859 377 PSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDS-- 454 (851)
Q Consensus 377 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~i~~-- 454 (851)
..|. .+.| .+|+.+|.++... +++++++||+.+++... +.+...
T Consensus 123 ~~p~----------------------------~~~y-~sK~~~e~~~~~~--~i~~~~lrp~~~~~~~~---~~~~~~~~ 168 (307)
T 2gas_A 123 VEPV----------------------------RQVF-EEKASIRRVIEAE--GVPYTYLCCHAFTGYFL---RNLAQLDA 168 (307)
T ss_dssp CTTH----------------------------HHHH-HHHHHHHHHHHHH--TCCBEEEECCEETTTTG---GGTTCTTC
T ss_pred CCcc----------------------------hhHH-HHHHHHHHHHHHc--CCCeEEEEcceeecccc---cccccccc
Confidence 1111 1349 9999999998754 79999999999988643 222221
Q ss_pred -h-cCCceEEEEccc---------CceeEEEeecCC--CCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 455 -L-NGPVGVLVASGK---------GVVRSMILNDLS--TETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 455 -~-~~~~~~~~~~g~---------~v~~~~~~~~~~--~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
. .++...+.+.|. |+++++...... ..+++|++.++. +++|+.|+++.+.+..|.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~~~~~~~~~~~-~~~s~~e~~~~~~~~~g~ 236 (307)
T 2gas_A 169 TDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAANDPNTLNKAVHIRLPK-NYLTQNEVIALWEKKIGK 236 (307)
T ss_dssp SSCCSSEEEEETTSCSEEEEECHHHHHHHHHHHHTCGGGTTEEEECCCGG-GEEEHHHHHHHHHHHHTS
T ss_pred ccCCCCeEEEecCCCcceEEeeHHHHHHHHHHHHcCccccCceEEEeCCC-CcCCHHHHHHHHHHHhCC
Confidence 1 122222222222 222222211111 235677775432 579999999999999986
|
| >2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=7.5e-20 Score=177.62 Aligned_cols=134 Identities=26% Similarity=0.444 Sum_probs=117.9
Q ss_pred ccCccCCCCCCCCCce---eeeeccceeecCC-----ccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHH
Q psy11859 669 TTGLWYPNGQIRSNRF---WHYFFVIFTQILP-----AYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAH 740 (851)
Q Consensus 669 t~~~~~~~~~l~~h~~---~h~~~~~~~c~~c-----~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H 740 (851)
++..+.....|..|+. .|.+.++|.|..| ++.|.+...|..|+++|++++||.|.++.|++.|.+...|..|
T Consensus 9 C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H 88 (155)
T 2gli_A 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTH 88 (155)
T ss_dssp CCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHH
T ss_pred CccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHH
Confidence 3445555778899987 7889999998753 4999999999999999999999999433699999999999999
Q ss_pred HhhhcCCCccccCccc--cCccccCchhHHHhh-hhcCCCCCccCCC--CCCccccccccCCcccccCcccccccccCCC
Q psy11859 741 LRRHSGERSFKCDWQD--CKWQFSRSDELSRHR-RSHFGIKPYPCTL--CVKKSLLAILNCPHEAECTPTFKHRAEKTST 815 (851)
Q Consensus 741 ~~~H~gekp~~C~~~~--C~k~F~~~~~L~~H~-r~H~gekp~~C~~--Cgk~f~~~~~~~~H~~~C~k~f~~~~~~~~~ 815 (851)
+++|++++||.|+ . |++.|.+...|.+|+ +.|++++||.|+. |++.|..
T Consensus 89 ~~~h~~~~~~~C~--~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~------------------------ 142 (155)
T 2gli_A 89 LRSHTGEKPYMCE--HEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTD------------------------ 142 (155)
T ss_dssp HHHTTTCCCEECC--STTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESS------------------------
T ss_pred HHHcCCCCCeeCC--CCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCC------------------------
Confidence 9999999999997 6 999999999999998 8999999999988 9887643
Q ss_pred CCCccChHHHHHHHHhhcC
Q psy11859 816 PGPSMCKRHLAKHLKVHER 834 (851)
Q Consensus 816 ~~pf~Ck~~L~~H~r~Htg 834 (851)
++.|..|+++|+|
T Consensus 143 ------~~~L~~H~~~hhg 155 (155)
T 2gli_A 143 ------PSSLRKHVKTVHG 155 (155)
T ss_dssp ------HHHHHHHHHHSCC
T ss_pred ------HHHHHHHHHhhcC
Confidence 3589999999986
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=9.1e-19 Score=189.82 Aligned_cols=222 Identities=15% Similarity=0.213 Sum_probs=145.0
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
.|+|||||||||||++|++.|++.| ..|++++|........++...+ ..+. ..+++++.+|++|+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~l~R~~~~~~~~~~~~~~------~~l~------~~~v~~v~~D~~d~ 68 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLG---HPTFLLVRESTASSNSEKAQLL------ESFK------ASGANIVHGSIDDH 68 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT---CCEEEECCCCCTTTTHHHHHHH------HHHH------TTTCEEECCCTTCH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC---CCEEEEECCcccccCHHHHHHH------HHHH------hCCCEEEEeccCCH
Confidence 4789999999999999999999998 6789999986543111111111 0010 13789999999987
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccCC
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYP 377 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~~ 377 (851)
+ ++..+++++|+|||+|+... +.++.+++++|++.+++++||+ |+ |+.. .+|....
T Consensus 69 ~------~l~~~~~~~d~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~-S~-~g~~----~~~~~~~ 124 (308)
T 1qyc_A 69 A------SLVEAVKNVDVVISTVGSLQ------------IESQVNIIKAIKEVGTVKRFFP-SE-FGND----VDNVHAV 124 (308)
T ss_dssp H------HHHHHHHTCSEEEECCCGGG------------SGGGHHHHHHHHHHCCCSEEEC-SC-CSSC----TTSCCCC
T ss_pred H------HHHHHHcCCCEEEECCcchh------------hhhHHHHHHHHHhcCCCceEee-cc-cccC----ccccccC
Confidence 6 88889999999999998642 5678999999998865899984 43 3211 1121111
Q ss_pred CCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhHhhh-hc
Q psy11859 378 SPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDS-LN 456 (851)
Q Consensus 378 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~i~~-~~ 456 (851)
.|. .+.| .+|+.+|.++++. +++++++||+.++|.....+..+... ..
T Consensus 125 ~p~----------------------------~~~y-~sK~~~e~~~~~~--~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 173 (308)
T 1qyc_A 125 EPA----------------------------KSVF-EVKAKVRRAIEAE--GIPYTYVSSNCFAGYFLRSLAQAGLTAPP 173 (308)
T ss_dssp TTH----------------------------HHHH-HHHHHHHHHHHHH--TCCBEEEECCEEHHHHTTTTTCTTCSSCC
T ss_pred Ccc----------------------------hhHH-HHHHHHHHHHHhc--CCCeEEEEeceeccccccccccccccCCC
Confidence 111 1348 9999999999764 79999999999987543221111101 11
Q ss_pred CCceEEEEcc---------cCceeEEEeecCC--CCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 457 GPVGVLVASG---------KGVVRSMILNDLS--TETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 457 ~~~~~~~~~g---------~~v~~~~~~~~~~--~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
+....+.+.| .|+++++...... ..+++|++.++. +++|+.|+++.+.+..|.
T Consensus 174 ~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~~~~~~~~g~~-~~~s~~e~~~~~~~~~g~ 237 (308)
T 1qyc_A 174 RDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPA-NTLSLNELVALWEKKIDK 237 (308)
T ss_dssp SSEEEEETTSCCEEEEECHHHHHHHHHTTSSCGGGTTEEEECCCGG-GEEEHHHHHHHHHHHTTS
T ss_pred CCceEEecCCCceEEEecHHHHHHHHHHHHhCccccCeEEEEeCCC-CccCHHHHHHHHHHHhCC
Confidence 2222223323 2333322222221 235678876432 579999999999999885
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.77 E-value=7e-19 Score=188.58 Aligned_cols=225 Identities=17% Similarity=0.187 Sum_probs=149.0
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++|+||||||+|+||++++++|++.| .+|++++|..... +.+ ..+ ...++.++.+|+++
T Consensus 4 ~~k~vlVTGas~gIG~~~a~~l~~~G---~~V~~~~r~~~~~---~~~------------~~~---~~~~~~~~~~Dv~~ 62 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAG---DTVIGTARRTEAL---DDL------------VAA---YPDRAEAISLDVTD 62 (281)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSGGGG---HHH------------HHH---CTTTEEEEECCTTC
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHH---HHH------------HHh---ccCCceEEEeeCCC
Confidence 57999999999999999999999998 7899999975431 111 111 12478999999999
Q ss_pred CcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHH----HHHHHHHHHhcCCceEEEE
Q psy11859 297 ANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRG----TQRLLDIALKMKKLVAFIH 358 (851)
Q Consensus 297 ~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~G----t~~ll~~a~~~~~~~~fV~ 358 (851)
++ ++..+++ ++|+|||+||.... .+.++..+++|+.| ++.++..+++.+ ..++|+
T Consensus 63 ~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~ 135 (281)
T 3m1a_A 63 GE------RIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERG-SGSVVN 135 (281)
T ss_dssp HH------HHHHHHHHHHHHHSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEE
T ss_pred HH------HHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEE
Confidence 86 6666554 78999999997532 24567789999999 555555555554 689999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... ..+. ..|+.||+..|.+++.++. ++++.
T Consensus 136 ~sS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~ 177 (281)
T 3m1a_A 136 ISSFGGQLS---------FAGF-----------------------------SAYSATKAALEQLSEGLADEVAPFGIKVL 177 (281)
T ss_dssp ECCGGGTCC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred EcCccccCC---------CCCc-----------------------------hHHHHHHHHHHHHHHHHHHHhhccCcEEE
Confidence 999654321 1222 3499999999999876643 89999
Q ss_pred EEecccccCCCCCC--------chhHhhhh-------cCCceEEEEcccCceeEEEeecC-CCCccEEEEeCCCCccccH
Q psy11859 434 IVRPSIVLPSFQEP--------VPGWVDSL-------NGPVGVLVASGKGVVRSMILNDL-STETQVFNISSNEVEAITW 497 (851)
Q Consensus 434 ivRp~~V~G~~~~p--------~p~~i~~~-------~~~~~~~~~~g~~v~~~~~~~~~-~~~~~iyni~~~~~~~~t~ 497 (851)
++|||.|.++...+ .+.+.... .+......+...|+++++....+ ...+.+|+++++ ....+
T Consensus 178 ~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~~~~~~~~~~~~~l~s~--~~~~i 255 (281)
T 3m1a_A 178 IVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQLVQGSDGSQPGDPAKAAAAIRLALDTEKTPLRLALGGD--AVDFL 255 (281)
T ss_dssp EEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHHHHHC-----CBCHHHHHHHHHHHHHSSSCCSEEEESHH--HHHHH
T ss_pred EEecCccccccccccccccCCcchhhHHHhHHHHHHHhhccCCCCCCHHHHHHHHHHHHhCCCCCeEEecCch--HHHHH
Confidence 99999998875322 22222211 11111112233455555443322 345668888876 44455
Q ss_pred HHHHHHHHHHhh
Q psy11859 498 GEIISRGKQLIY 509 (851)
Q Consensus 498 ~el~~~~~~~~~ 509 (851)
.+....+.+.++
T Consensus 256 ~g~~~~i~~~~~ 267 (281)
T 3m1a_A 256 TGHLDSVRAELT 267 (281)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555433
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.9e-19 Score=185.24 Aligned_cols=215 Identities=14% Similarity=0.137 Sum_probs=145.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||+++++.|++.| .+|++++|.... +.++ .+.++. ...++.++.+|++
T Consensus 11 l~~k~vlItGasggiG~~la~~l~~~G---~~V~~~~r~~~~------~~~~-----~~~l~~----~~~~~~~~~~D~~ 72 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVTALAEAG---ARVIIADLDEAM------ATKA-----VEDLRM----EGHDVSSVVMDVT 72 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH------HHHH-----HHHHHH----TTCCEEEEECCTT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHH------HHHH-----HHHHHh----cCCceEEEEecCC
Confidence 578999999999999999999999998 689999986421 1111 111211 1247899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCC-c-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLK-L-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~-~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV 357 (851)
|++ ++..+++ ++|+|||+||... . .+.+...+++|+.|+.++++++... .+..++|
T Consensus 73 ~~~------~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv 146 (260)
T 3awd_A 73 NTE------SVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIV 146 (260)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEE
Confidence 876 6666554 7999999999654 1 2345778999999999999988652 1368999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||.++.... +..|. ..|+.||+..|.++..++. ++++
T Consensus 147 ~~sS~~~~~~~-------~~~~~-----------------------------~~Y~~sK~a~~~~~~~l~~e~~~~gi~v 190 (260)
T 3awd_A 147 AIGSMSGLIVN-------RPQQQ-----------------------------AAYNASKAGVHQYIRSLAAEWAPHGIRA 190 (260)
T ss_dssp EECCGGGTSCC-------SSSCC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEecchhcccC-------CCCCc-----------------------------cccHHHHHHHHHHHHHHHHHhhhcCeEE
Confidence 99997654321 01111 3499999999999877642 8999
Q ss_pred EEEecccccCCCCC-C--chhHhhhhcCCceE-EEEcccCceeEEEeecC----CCCccEEEEeCC
Q psy11859 433 VIVRPSIVLPSFQE-P--VPGWVDSLNGPVGV-LVASGKGVVRSMILNDL----STETQVFNISSN 490 (851)
Q Consensus 433 ~ivRp~~V~G~~~~-p--~p~~i~~~~~~~~~-~~~~g~~v~~~~~~~~~----~~~~~iyni~~~ 490 (851)
.++|||.|+++... . .+.+.+.+....+. .++...++++++..... ...|++|++++|
T Consensus 191 ~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 256 (260)
T 3awd_A 191 NAVAPTYIETTLTRFGMEKPELYDAWIAGTPMGRVGQPDEVASVVQFLASDAASLMTGAIVNVDAG 256 (260)
T ss_dssp EEEEECCBCCTTTHHHHTCHHHHHHHHHTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EEEEeeeeccchhhcccCChHHHHHHHhcCCcCCCCCHHHHHHHHHHHhCchhccCCCcEEEECCc
Confidence 99999999998754 1 23343332211111 11223444444332211 235778888877
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.9e-18 Score=181.08 Aligned_cols=212 Identities=15% Similarity=0.161 Sum_probs=132.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| ..|++++|... ++.++ .+.+.. ...++.++.+|++
T Consensus 12 l~~k~vlITGasggiG~~la~~l~~~G---~~V~~~~r~~~------~~~~~-----~~~~~~----~~~~~~~~~~D~~ 73 (266)
T 1xq1_A 12 LKAKTVLVTGGTKGIGHAIVEEFAGFG---AVIHTCARNEY------ELNEC-----LSKWQK----KGFQVTGSVCDAS 73 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHHH----TTCCEEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH-----HHHHHh----cCCeeEEEECCCC
Confidence 578999999999999999999999998 68999988642 12111 111211 1236889999999
Q ss_pred CCcCCCCHHHHHHHh--------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHH----hcCCceEE
Q psy11859 296 QANLGIKDSDLLMLQ--------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIAL----KMKKLVAF 356 (851)
Q Consensus 296 ~~~lgls~~~~~~~~--------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~f 356 (851)
+++ ++..++ .++|+|||+||.... .+.+...+++|+.|+.++++++. +. +..++
T Consensus 74 ~~~------~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~i 146 (266)
T 1xq1_A 74 LRP------EREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKAS-GCGNI 146 (266)
T ss_dssp SHH------HHHHHHHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCEE
T ss_pred CHH------HHHHHHHHHHHHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEE
Confidence 876 555554 578999999997542 24567789999999999999984 34 36899
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~ 431 (851)
|++||..++.. ..+. ..|+.||+..|.+++.++. +++
T Consensus 147 v~isS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~ 188 (266)
T 1xq1_A 147 IFMSSIAGVVS---------ASVG-----------------------------SIYSATKGALNQLARNLACEWASDGIR 188 (266)
T ss_dssp EEEC-------------------C-----------------------------CHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred EEEccchhccC---------CCCC-----------------------------chHHHHHHHHHHHHHHHHHHHhHhCcE
Confidence 99999765432 1112 3499999999998876542 899
Q ss_pred EEEEecccccCCCCCCc--hhHhhhhcCCceE-EEEcccCceeEEEeecC----CCCccEEEEeCC
Q psy11859 432 VVIVRPSIVLPSFQEPV--PGWVDSLNGPVGV-LVASGKGVVRSMILNDL----STETQVFNISSN 490 (851)
Q Consensus 432 ~~ivRp~~V~G~~~~p~--p~~i~~~~~~~~~-~~~~g~~v~~~~~~~~~----~~~~~iyni~~~ 490 (851)
+.++|||.|+++..... +.+...+....+. .++..+++++++..... ...|+++++++|
T Consensus 189 v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 254 (266)
T 1xq1_A 189 ANAVAPAVIATPLAEAVYDDEFKKVVISRKPLGRFGEPEEVSSLVAFLCMPAASYITGQTICVDGG 254 (266)
T ss_dssp EEEEECCSCC-------------------------CCGGGGHHHHHHHTSGGGTTCCSCEEECCCC
T ss_pred EEEEeeCCCccchhhhhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCcEEEEcCC
Confidence 99999999999865432 2222222221111 12334555554432221 235778888877
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-18 Score=180.15 Aligned_cols=214 Identities=17% Similarity=0.202 Sum_probs=147.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecC-CCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRA-KRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~-~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
+++|+||||||+|+||++++++|++.| .+|++++|. ... .+.+. +.+.. ...++.++.+|+
T Consensus 5 l~~k~vlVTGasggiG~~~a~~l~~~G---~~V~~~~r~~~~~---~~~~~--------~~~~~----~~~~~~~~~~D~ 66 (258)
T 3afn_B 5 LKGKRVLITGSSQGIGLATARLFARAG---AKVGLHGRKAPAN---IDETI--------ASMRA----DGGDAAFFAADL 66 (258)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCCTT---HHHHH--------HHHHH----TTCEEEEEECCT
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEECCCchhh---HHHHH--------HHHHh----cCCceEEEECCC
Confidence 578999999999999999999999998 689999997 332 11111 11111 124788999999
Q ss_pred CCCcCCCCHHHHHHHhc-------CccEEEEcccc-CC---c----chhHHHHHHHHHHHHHHHHHHHHhc--------C
Q psy11859 295 LQANLGIKDSDLLMLQE-------EVSVVFNGAAS-LK---L----EAELKENVAANTRGTQRLLDIALKM--------K 351 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~-------~vd~ViH~AA~-~~---~----~~~~~~~~~~Nv~Gt~~ll~~a~~~--------~ 351 (851)
++++ ++..+++ ++|+|||+||. .. + .+.+...+++|+.|+.++++++... +
T Consensus 67 ~~~~------~~~~~~~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 140 (258)
T 3afn_B 67 ATSE------ACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASG 140 (258)
T ss_dssp TSHH------HHHHHHHHHHHHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCC
Confidence 9876 6666665 89999999996 32 1 1346678999999999999877532 1
Q ss_pred CceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC---
Q psy11859 352 KLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--- 428 (851)
Q Consensus 352 ~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--- 428 (851)
...++|++||.+++.. ...+. ..|+.||+..|.+++.++.
T Consensus 141 ~~~~iv~~sS~~~~~~--------~~~~~-----------------------------~~Y~~sK~a~~~~~~~~~~e~~ 183 (258)
T 3afn_B 141 QTSAVISTGSIAGHTG--------GGPGA-----------------------------GLYGAAKAFLHNVHKNWVDFHT 183 (258)
T ss_dssp SCEEEEEECCTHHHHC--------CCTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCcEEEEecchhhccC--------CCCCc-----------------------------hHHHHHHHHHHHHHHHHHHhhc
Confidence 1278999999765431 01122 3499999999999876542
Q ss_pred --CCCEEEEecccccCCCCCC-chhHhhhhcCCceE-EEEcccCceeEEEeecC-----CCCccEEEEeCC
Q psy11859 429 --KLPVVIVRPSIVLPSFQEP-VPGWVDSLNGPVGV-LVASGKGVVRSMILNDL-----STETQVFNISSN 490 (851)
Q Consensus 429 --~l~~~ivRp~~V~G~~~~p-~p~~i~~~~~~~~~-~~~~g~~v~~~~~~~~~-----~~~~~iyni~~~ 490 (851)
++++.++|||.|+++.... .+.+.+.+....+. -++...++++++..... ...|++|++++|
T Consensus 184 ~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gg 254 (258)
T 3afn_B 184 KDGVRFNIVSPGTVDTAFHADKTQDVRDRISNGIPMGRFGTAEEMAPAFLFFASHLASGYITGQVLDINGG 254 (258)
T ss_dssp GGTEEEEEEEECSBSSGGGTTCCHHHHHHHHTTCTTCSCBCGGGTHHHHHHHHCHHHHTTCCSEEEEESTT
T ss_pred ccCeEEEEEeCCCcccccccccCHHHHHHHhccCCCCcCCCHHHHHHHHHHHhCcchhccccCCEEeECCC
Confidence 8999999999999986544 24444443222221 12334566655443322 125789999887
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-18 Score=188.65 Aligned_cols=219 Identities=17% Similarity=0.243 Sum_probs=144.5
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC-CCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK-RGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~-~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+.|+|||||||||||++|++.|++.| .+|++++|.. ..... ++...+ ..+. ..+++++.+|++
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~-~~~~~l------~~~~------~~~v~~v~~D~~ 66 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFS---HPTFIYARPLTPDSTP-SSVQLR------EEFR------SMGVTIIEGEME 66 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTT---CCEEEEECCCCTTCCH-HHHHHH------HHHH------HTTCEEEECCTT
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCC---CcEEEEECCcccccCh-HHHHHH------HHhh------cCCcEEEEecCC
Confidence 35789999999999999999999998 6789999986 32211 111111 0011 136889999999
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCccccccc
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKL 375 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~ 375 (851)
|++ ++..+++++|+|||+|+... +.++.+++++|++.+++++||+ |.|+ .. .+|..
T Consensus 67 d~~------~l~~a~~~~d~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~--S~~g--~~--~~~~~ 122 (321)
T 3c1o_A 67 EHE------KMVSVLKQVDIVISALPFPM------------ISSQIHIINAIKAAGNIKRFLP--SDFG--CE--EDRIK 122 (321)
T ss_dssp CHH------HHHHHHTTCSEEEECCCGGG------------SGGGHHHHHHHHHHCCCCEEEC--SCCS--SC--GGGCC
T ss_pred CHH------HHHHHHcCCCEEEECCCccc------------hhhHHHHHHHHHHhCCccEEec--cccc--cC--ccccc
Confidence 886 89999999999999998642 6788999999998855899983 3332 11 12211
Q ss_pred CCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhHhhh-
Q psy11859 376 YPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDS- 454 (851)
Q Consensus 376 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~i~~- 454 (851)
+..|. .+.| .+|+.+|.++++. +++++++||+.++|.. ++.+...
T Consensus 123 ---~~~p~-------------------------~~~y-~sK~~~e~~~~~~--~~~~~~lrp~~~~~~~---~~~~~~~~ 168 (321)
T 3c1o_A 123 ---PLPPF-------------------------ESVL-EKKRIIRRAIEAA--ALPYTYVSANCFGAYF---VNYLLHPS 168 (321)
T ss_dssp ---CCHHH-------------------------HHHH-HHHHHHHHHHHHH--TCCBEEEECCEEHHHH---HHHHHCCC
T ss_pred ---cCCCc-------------------------chHH-HHHHHHHHHHHHc--CCCeEEEEeceecccc---cccccccc
Confidence 11110 1349 9999999999754 7999999999988753 2222221
Q ss_pred ---hcCCceEEEEcccC---------ceeEEEeecC--CCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 455 ---LNGPVGVLVASGKG---------VVRSMILNDL--STETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 455 ---~~~~~~~~~~~g~~---------v~~~~~~~~~--~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
..++.....+.+.. +++++..... ...+++|+++++. .++|+.|+++.+.+.+|.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~g~~~~~~g~~-~~~t~~e~~~~~~~~~g~ 237 (321)
T 3c1o_A 169 PHPNRNDDIVIYGTGETKFVLNYEEDIAKYTIKVACDPRCCNRIVIYRPPK-NIISQNELISLWEAKSGL 237 (321)
T ss_dssp SSCCTTSCEEEETTSCCEEEEECHHHHHHHHHHHHHCGGGTTEEEECCCGG-GEEEHHHHHHHHHHHHTS
T ss_pred ccccccCceEEecCCCcceeEeeHHHHHHHHHHHHhCccccCeEEEEeCCC-CcccHHHHHHHHHHHcCC
Confidence 12222233333322 2222211111 1246778876431 579999999999999986
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=7e-19 Score=190.50 Aligned_cols=231 Identities=15% Similarity=0.144 Sum_probs=154.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.++ .+.+... ...++.++.+|++
T Consensus 24 l~~k~vlITGasggiG~~la~~L~~~G---~~V~~~~r~~~------~~~~~-----~~~l~~~---~~~~~~~~~~Dl~ 86 (302)
T 1w6u_A 24 FQGKVAFITGGGTGLGKGMTTLLSSLG---AQCVIASRKMD------VLKAT-----AEQISSQ---TGNKVHAIQCDVR 86 (302)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHHHH---HSSCEEEEECCTT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH-----HHHHHHh---cCCceEEEEeCCC
Confidence 678999999999999999999999998 68999998642 11111 1112111 1247899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc----CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM----KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~~~~~fV 357 (851)
+++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++... .+..++|
T Consensus 87 ~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv 160 (302)
T 1w6u_A 87 DPD------MVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFL 160 (302)
T ss_dssp CHH------HHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 876 6665544 56999999996432 2456788999999999999888642 2357999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||.+++.. ..+. ..|+.||+..|.+++.++. ++++
T Consensus 161 ~isS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~~~~~~gi~v 202 (302)
T 1w6u_A 161 SITTIYAETG---------SGFV-----------------------------VPSASAKAGVEAMSKSLAAEWGKYGMRF 202 (302)
T ss_dssp EECCTHHHHC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEcccccccC---------CCCc-----------------------------chhHHHHHHHHHHHHHHHHHhhhcCcEE
Confidence 9999765421 1122 3499999999999877642 8999
Q ss_pred EEEecccccCCCC--CCchh--HhhhhcCCceE-EEEcccCceeEEEeecC----CCCccEEEEeCCCCccccHHHHHHH
Q psy11859 433 VIVRPSIVLPSFQ--EPVPG--WVDSLNGPVGV-LVASGKGVVRSMILNDL----STETQVFNISSNEVEAITWGEIISR 503 (851)
Q Consensus 433 ~ivRp~~V~G~~~--~p~p~--~i~~~~~~~~~-~~~~g~~v~~~~~~~~~----~~~~~iyni~~~~~~~~t~~el~~~ 503 (851)
.++|||.|+++.. ...+. +...+....+. .++...++++++..... ...|++|++++| ..+++.++++.
T Consensus 203 ~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg--~~~~~~~~~~~ 280 (302)
T 1w6u_A 203 NVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCGRLGTVEELANLAAFLCSDYASWINGAVIKFDGG--EEVLISGEFND 280 (302)
T ss_dssp EEEEECCBCC------CCTTSHHHHHHHTTCTTSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT--HHHHHHSTTGG
T ss_pred EEEeeccCCCcchhhhcccchhhHHHHHhcCCcCCCCCHHHHHHHHHHHcCCcccccCCCEEEECCC--eeeccCCcccc
Confidence 9999999998732 11111 11122111111 12223455554433222 225789999998 56788887777
Q ss_pred HHHHhh
Q psy11859 504 GKQLIY 509 (851)
Q Consensus 504 ~~~~~~ 509 (851)
+.+..+
T Consensus 281 ~~~~~g 286 (302)
T 1w6u_A 281 LRKVTK 286 (302)
T ss_dssp GGGCCH
T ss_pred chhhcc
Confidence 666544
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6e-18 Score=184.45 Aligned_cols=213 Identities=19% Similarity=0.269 Sum_probs=143.2
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
++|||||||||||++|++.|++.| ..|++++|..... .+.+.++ . ..+++++.+|++|++
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g---~~V~~l~R~~~~~--~~~~~~l---------~------~~~v~~v~~Dl~d~~ 71 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLG---HPTYVFTRPNSSK--TTLLDEF---------Q------SLGAIIVKGELDEHE 71 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTT---CCEEEEECTTCSC--HHHHHHH---------H------HTTCEEEECCTTCHH
T ss_pred CeEEEECCCchHHHHHHHHHHHCC---CcEEEEECCCCch--hhHHHHh---------h------cCCCEEEEecCCCHH
Confidence 589999999999999999999998 6789999986521 1222111 0 136889999999886
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccCCC
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPS 378 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~~~ 378 (851)
++..+++++|+|||+|+... +.++.+++++|++.+++++||+ |+ | |.. .+|. .
T Consensus 72 ------~l~~a~~~~d~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~-S~-~--g~~--~~~~---~ 124 (318)
T 2r6j_A 72 ------KLVELMKKVDVVISALAFPQ------------ILDQFKILEAIKVAGNIKRFLP-SD-F--GVE--EDRI---N 124 (318)
T ss_dssp ------HHHHHHTTCSEEEECCCGGG------------STTHHHHHHHHHHHCCCCEEEC-SC-C--SSC--TTTC---C
T ss_pred ------HHHHHHcCCCEEEECCchhh------------hHHHHHHHHHHHhcCCCCEEEe-ec-c--ccC--cccc---c
Confidence 89999999999999998642 6688999999998855899985 43 3 211 1121 1
Q ss_pred CCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhHhhhh-cC
Q psy11859 379 PVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDSL-NG 457 (851)
Q Consensus 379 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~i~~~-~~ 457 (851)
+..|. .+.| .+|+.+|.++++ .+++++++||+.+++.. ++.+.... .+
T Consensus 125 ~~~p~-------------------------~~~y-~sK~~~e~~~~~--~~~~~~~lr~~~~~~~~---~~~~~~~~~~~ 173 (318)
T 2r6j_A 125 ALPPF-------------------------EALI-ERKRMIRRAIEE--ANIPYTYVSANCFASYF---INYLLRPYDPK 173 (318)
T ss_dssp CCHHH-------------------------HHHH-HHHHHHHHHHHH--TTCCBEEEECCEEHHHH---HHHHHCTTCCC
T ss_pred CCCCc-------------------------chhH-HHHHHHHHHHHh--cCCCeEEEEcceehhhh---hhhhccccCCC
Confidence 11120 0248 999999999975 37999999999877642 33333332 22
Q ss_pred CceEEEEccc---------CceeEEEeecCC--CCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 458 PVGVLVASGK---------GVVRSMILNDLS--TETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 458 ~~~~~~~~g~---------~v~~~~~~~~~~--~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
+...+.+.+. |+++++...... ..+++|++.++. .++|+.|+++.+.+..|.
T Consensus 174 ~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~~~~~~~~g~~-~~~s~~e~~~~~~~~~g~ 236 (318)
T 2r6j_A 174 DEITVYGTGEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPST-NIITQLELISRWEKKIGK 236 (318)
T ss_dssp SEEEEETTSCCEEEEECHHHHHHHHHHHTTCGGGTTEEEECCCGG-GEEEHHHHHHHHHHHHTC
T ss_pred CceEEecCCCceeeEeeHHHHHHHHHHHhcCccccCeEEEecCCC-CccCHHHHHHHHHHHhCC
Confidence 2222333332 222222211111 235677775431 579999999999999985
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-18 Score=182.98 Aligned_cols=174 Identities=17% Similarity=0.123 Sum_probs=123.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCc---ccCCCeEEEEc
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECP---AQLSRLHIIEG 292 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~---~~~~~v~~v~g 292 (851)
+++|+||||||+|+||+++++.|++.| .+|++++|.... .+.+.+ .+..... ....++.++.+
T Consensus 5 ~~~k~vlITGasggiG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 70 (264)
T 2pd6_A 5 LRSALALVTGAGSGIGRAVSVRLAGEG---ATVAACDLDRAA---AQETVR--------LLGGPGSKEGPPRGNHAAFQA 70 (264)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSHHH---HHHHHH--------TC------------CCEEEEC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCChHH---HHHHHH--------HHHhcCccccccCcceEEEEe
Confidence 568999999999999999999999998 689999986421 111111 0110000 00147889999
Q ss_pred CCCCCcCCCCHHHHHHHhcC-------c-cEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhcC---C-c
Q psy11859 293 DILQANLGIKDSDLLMLQEE-------V-SVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKMK---K-L 353 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~~~-------v-d~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~---~-~ 353 (851)
|++|++ ++..+++. + |+|||+||.... .+.+...+++|+.|+.++++++...- + .
T Consensus 71 D~~~~~------~~~~~~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ 144 (264)
T 2pd6_A 71 DVSEAR------AARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCR 144 (264)
T ss_dssp CTTSHH------HHHHHHHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC
T ss_pred cCCCHH------HHHHHHHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 999876 66655543 4 999999997643 24567889999999999999987641 2 4
Q ss_pred eEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----
Q psy11859 354 VAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----- 428 (851)
Q Consensus 354 ~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----- 428 (851)
.+||++||.++... ..+. ..|+.||+..|.+++.++.
T Consensus 145 g~iv~isS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~ 186 (264)
T 2pd6_A 145 GSIINISSIVGKVG---------NVGQ-----------------------------TNYAASKAGVIGLTQTAARELGRH 186 (264)
T ss_dssp EEEEEECCTHHHHC---------CTTB-----------------------------HHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred ceEEEECChhhccC---------CCCC-----------------------------hhhHHHHHHHHHHHHHHHHHhhhc
Confidence 68999999754321 1111 3499999999988876542
Q ss_pred CCCEEEEecccccCCCCCC
Q psy11859 429 KLPVVIVRPSIVLPSFQEP 447 (851)
Q Consensus 429 ~l~~~ivRp~~V~G~~~~p 447 (851)
++++.++|||.|+++....
T Consensus 187 gi~v~~v~Pg~v~t~~~~~ 205 (264)
T 2pd6_A 187 GIRCNSVLPGFIATPMTQK 205 (264)
T ss_dssp TEEEEEEEECSBCSCC---
T ss_pred CeEEEEEeeecccccchhh
Confidence 8999999999999986543
|
| >2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.9e-19 Score=161.92 Aligned_cols=107 Identities=40% Similarity=0.804 Sum_probs=95.6
Q ss_pred cCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCCCCcccccc
Q psy11859 714 ENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLLAI 793 (851)
Q Consensus 714 h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~Cgk~f~~~~ 793 (851)
+++++||.|.++.|++.|.+...|..|++.|++++||.|+...|++.|.+...|..|+++|++++||.|+.|++.|..
T Consensus 1 a~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-- 78 (119)
T 2jp9_A 1 ASEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSR-- 78 (119)
T ss_dssp CCSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESC--
T ss_pred CCCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCC--
Confidence 367899999444599999999999999999999999999622599999999999999999999999999999997643
Q ss_pred ccCCcccccCcccccccccCCCCCCccChHHHHHHHHhhcCCcchhh--hhhHHhhhcC
Q psy11859 794 LNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVHERQKYKMM--MKSMRKMKNK 850 (851)
Q Consensus 794 ~~~~H~~~C~k~f~~~~~~~~~~~pf~Ck~~L~~H~r~Htgek~~~C--~~c~~~f~~k 850 (851)
+..|..|+++|++++||.| ..||+.|+.+
T Consensus 79 ----------------------------~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~ 109 (119)
T 2jp9_A 79 ----------------------------SDHLKTHTRTHTGEKPFSCRWPSCQKKFARS 109 (119)
T ss_dssp ----------------------------HHHHHHHHHHHHTCCCEECCSTTCCCEESSH
T ss_pred ----------------------------HHHHHHHHHHhcCCCCeeCCCCCCccccCCH
Confidence 3589999999999999999 8999999864
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=6.5e-18 Score=180.73 Aligned_cols=230 Identities=14% Similarity=0.168 Sum_probs=142.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||+++++.|++.| .+|++++|... ++.++. +.+... .....++.++.+|++
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~------~~~~~~-----~~~~~~-~~~~~~~~~~~~D~~ 68 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVLFAREG---AKVTITGRHAE------RLEETR-----QQILAA-GVSEQNVNSVVADVT 68 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH-----HHHHHT-TCCGGGEEEEECCTT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHHH-----HHHHhc-ccCCCceeEEecccC
Confidence 468999999999999999999999998 68999998632 222111 111100 111236889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-----------chhHHHHHHHHHHHHHHHHHHHHhc---CCce
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-----------EAELKENVAANTRGTQRLLDIALKM---KKLV 354 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-----------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~ 354 (851)
+++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+ .
T Consensus 69 ~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g 141 (278)
T 1spx_A 69 TDA------GQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-G 141 (278)
T ss_dssp SHH------HHHHHHHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-C
Confidence 886 6666665 89999999997532 2346678999999999999998754 12 7
Q ss_pred EEEEeeeeee-eCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-
Q psy11859 355 AFIHFSTAFC-HPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T- 428 (851)
Q Consensus 355 ~fV~vSTa~~-~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~- 428 (851)
++|++||..+ +.. .|. ...|+.||+..|.+++.++ .
T Consensus 142 ~iv~isS~~~~~~~----------~~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~ 183 (278)
T 1spx_A 142 EIVNISSIASGLHA----------TPD----------------------------FPYYSIAKAAIDQYTRNTAIDLIQH 183 (278)
T ss_dssp EEEEECCTTSSSSC----------CTT----------------------------SHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred eEEEEecccccccC----------CCC----------------------------ccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999654 321 111 1249999999999887654 2
Q ss_pred CCCEEEEecccccCCCCCC----chhH------hhhhcCCceE-EEEcccCceeEEEeecC----C-CCccEEEEeCCCC
Q psy11859 429 KLPVVIVRPSIVLPSFQEP----VPGW------VDSLNGPVGV-LVASGKGVVRSMILNDL----S-TETQVFNISSNEV 492 (851)
Q Consensus 429 ~l~~~ivRp~~V~G~~~~p----~p~~------i~~~~~~~~~-~~~~g~~v~~~~~~~~~----~-~~~~iyni~~~~~ 492 (851)
++++.++|||.|.++.... .+.+ ...+....+. -++...++++++..... . ..|.++++++|
T Consensus 184 gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~v~~l~s~~~~~~~tG~~~~vdgG-- 261 (278)
T 1spx_A 184 GIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGG-- 261 (278)
T ss_dssp TCEEEEEEECCBCCCC--------------HHHHHHHHHHCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTT--
T ss_pred CcEEEEEecCcccCccccccccCchhhhhhhHHHHHHHhcCCCcCCCCHHHHHHHHHHHcCccccCcccCcEEEECCC--
Confidence 8999999999999875322 1111 1211110000 01223455544432221 1 45889999988
Q ss_pred ccccHHHHHHHHHHH
Q psy11859 493 EAITWGEIISRGKQL 507 (851)
Q Consensus 493 ~~~t~~el~~~~~~~ 507 (851)
..+++.++++.+.+.
T Consensus 262 ~~~~~~~~~~~~~~~ 276 (278)
T 1spx_A 262 SSLIMGLHCQDFAKL 276 (278)
T ss_dssp GGGC-----------
T ss_pred cccccCcccccHHHH
Confidence 678999999888764
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=8.6e-18 Score=176.54 Aligned_cols=213 Identities=15% Similarity=0.206 Sum_probs=145.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|.... +.+++ .+.+. ....++.++.+|++
T Consensus 2 l~~k~~lVTGas~gIG~~ia~~l~~~G---~~V~~~~~~~~~-----~~~~~-----~~~~~----~~~~~~~~~~~Dv~ 64 (246)
T 3osu_A 2 KMTKSALVTGASRGIGRSIALQLAEEG---YNVAVNYAGSKE-----KAEAV-----VEEIK----AKGVDSFAIQANVA 64 (246)
T ss_dssp CCSCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHH-----HHHHH-----HHHHH----HTTSCEEEEECCTT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCCHH-----HHHHH-----HHHHH----hcCCcEEEEEccCC
Confidence 367999999999999999999999998 678888775321 11111 11111 12347889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHH----HhcCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIA----LKMKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a----~~~~~~~~fV 357 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++ ++. +..++|
T Consensus 65 d~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv 137 (246)
T 3osu_A 65 DAD------EVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQ-RSGAII 137 (246)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEE
Confidence 986 6666554 79999999997642 2456788999999999999998 333 357999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+... ..+. ..|+.||+..|.+.+.++. ++++
T Consensus 138 ~isS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v 179 (246)
T 3osu_A 138 NLSSVVGAVG---------NPGQ-----------------------------ANYVATKAGVIGLTKSAARELASRGITV 179 (246)
T ss_dssp EECCHHHHHC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEcchhhcCC---------CCCC-----------------------------hHHHHHHHHHHHHHHHHHHHhcccCeEE
Confidence 9999654321 1112 3499999988888776543 8999
Q ss_pred EEEecccccCCCCCC-chhHhhhhcCCceE-EEEcccCceeEEEeecC----CCCccEEEEeCC
Q psy11859 433 VIVRPSIVLPSFQEP-VPGWVDSLNGPVGV-LVASGKGVVRSMILNDL----STETQVFNISSN 490 (851)
Q Consensus 433 ~ivRp~~V~G~~~~p-~p~~i~~~~~~~~~-~~~~g~~v~~~~~~~~~----~~~~~iyni~~~ 490 (851)
.+++||.|.++.... .+.+.+.+....+. .++...++++++..... ...|+++++++|
T Consensus 180 n~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdgG 243 (246)
T 3osu_A 180 NAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGG 243 (246)
T ss_dssp EEEEECSBGGGCCSCSCHHHHHHHHTTCTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred EEEEECCCcCCcccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEeCCC
Confidence 999999999886554 33344433222221 12333455554433222 235889999887
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-17 Score=172.80 Aligned_cols=164 Identities=20% Similarity=0.246 Sum_probs=125.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.++ .++ ..+++++.+|++
T Consensus 5 ~~~~~vlVTGasggiG~~~a~~l~~~G---~~V~~~~r~~~------~~~~~---------~~~----~~~~~~~~~D~~ 62 (244)
T 1cyd_A 5 FSGLRALVTGAGKGIGRDTVKALHASG---AKVVAVTRTNS------DLVSL---------AKE----CPGIEPVCVDLG 62 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH---------HHH----STTCEEEECCTT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH---------HHh----ccCCCcEEecCC
Confidence 578999999999999999999999998 68999998642 12111 111 125678899999
Q ss_pred CCcCCCCHHHHHHHhc---CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc----CCceEEEEeee
Q psy11859 296 QANLGIKDSDLLMLQE---EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM----KKLVAFIHFST 361 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~---~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~~~~~fV~vST 361 (851)
+++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... +...+||++||
T Consensus 63 ~~~------~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS 136 (244)
T 1cyd_A 63 DWD------ATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSS 136 (244)
T ss_dssp CHH------HHHHHHTTCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred CHH------HHHHHHHHcCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcc
Confidence 876 7777765 58999999996543 2356778999999999999988754 21579999999
Q ss_pred eeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEe
Q psy11859 362 AFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVR 436 (851)
Q Consensus 362 a~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivR 436 (851)
..++... .+. ..|+.||+..|.+++.++. ++++.++|
T Consensus 137 ~~~~~~~---------~~~-----------------------------~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~ 178 (244)
T 1cyd_A 137 MVAHVTF---------PNL-----------------------------ITYSSTKGAMTMLTKAMAMELGPHKIRVNSVN 178 (244)
T ss_dssp GGGTSCC---------TTB-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred hhhcCCC---------CCc-----------------------------chhHHHHHHHHHHHHHHHHHhhhcCeEEEEEe
Confidence 7654321 111 3499999999999977642 79999999
Q ss_pred cccccCCCC
Q psy11859 437 PSIVLPSFQ 445 (851)
Q Consensus 437 p~~V~G~~~ 445 (851)
|+.|+++..
T Consensus 179 pg~v~t~~~ 187 (244)
T 1cyd_A 179 PTVVLTDMG 187 (244)
T ss_dssp ECCBTTHHH
T ss_pred cCcccCccc
Confidence 999999753
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.3e-17 Score=171.51 Aligned_cols=170 Identities=16% Similarity=0.209 Sum_probs=124.1
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCC----ccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPD----IGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~----v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
++|+||||||+|+||++++++|++.|.. -..|+++.|... ++.++ ...+. ....++.++.+
T Consensus 1 ~~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~------~~~~~-----~~~~~----~~~~~~~~~~~ 65 (244)
T 2bd0_A 1 MKHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAA------DLEKI-----SLECR----AEGALTDTITA 65 (244)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHH------HHHHH-----HHHHH----TTTCEEEEEEC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHH------HHHHH-----HHHHH----ccCCeeeEEEe
Confidence 3689999999999999999999999830 007899988632 12111 11111 11247889999
Q ss_pred CCCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceE
Q psy11859 293 DILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVA 355 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~ 355 (851)
|+++++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++... .+..+
T Consensus 66 D~~~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ 139 (244)
T 2bd0_A 66 DISDMA------DVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGH 139 (244)
T ss_dssp CTTSHH------HHHHHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE
T ss_pred cCCCHH------HHHHHHHHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCE
Confidence 999876 6665554 79999999997543 2456788999999999999988542 13689
Q ss_pred EEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CC
Q psy11859 356 FIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KL 430 (851)
Q Consensus 356 fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l 430 (851)
+|++||..++.. ..+. ..|+.||+..|.+++.++ . ++
T Consensus 140 iv~isS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi 181 (244)
T 2bd0_A 140 IFFITSVAATKA---------FRHS-----------------------------SIYCMSKFGQRGLVETMRLYARKCNV 181 (244)
T ss_dssp EEEECCGGGTSC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHTTTTE
T ss_pred EEEEecchhcCC---------CCCC-----------------------------chhHHHHHHHHHHHHHHHHHhhccCc
Confidence 999999765432 1112 349999999999886543 2 89
Q ss_pred CEEEEecccccCCCC
Q psy11859 431 PVVIVRPSIVLPSFQ 445 (851)
Q Consensus 431 ~~~ivRp~~V~G~~~ 445 (851)
++.++|||.|+++..
T Consensus 182 ~v~~v~Pg~v~t~~~ 196 (244)
T 2bd0_A 182 RITDVQPGAVYTPMW 196 (244)
T ss_dssp EEEEEEECCBCSTTT
T ss_pred EEEEEECCCccchhh
Confidence 999999999999854
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-17 Score=169.66 Aligned_cols=153 Identities=20% Similarity=0.238 Sum_probs=116.9
Q ss_pred CEEEEecCccHHHHHHHHHHH-HhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLL-RSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll-~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
|+||||||||+||++++++|+ +.| .+|++++|.... ++.++ . ....++.++.+|++|+
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g---~~V~~~~r~~~~-----~~~~~---------~----~~~~~~~~~~~D~~d~ 64 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTD---MHITLYGRQLKT-----RIPPE---------I----IDHERVTVIEGSFQNP 64 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCC---CEEEEEESSHHH-----HSCHH---------H----HTSTTEEEEECCTTCH
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCC---ceEEEEecCccc-----cchhh---------c----cCCCceEEEECCCCCH
Confidence 579999999999999999999 777 689999997430 11111 0 0124789999999987
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcc-cccccC
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKV-LEEKLY 376 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~-i~E~~~ 376 (851)
+ ++..+++++|+|||+|+.. |+. ++++++++++.+ +++||++||..+++.... ..+..
T Consensus 65 ~------~~~~~~~~~d~vv~~ag~~------------n~~-~~~~~~~~~~~~-~~~iv~iSs~~~~~~~~~~~~~~~- 123 (221)
T 3r6d_A 65 G------XLEQAVTNAEVVFVGAMES------------GSD-MASIVKALSRXN-IRRVIGVSMAGLSGEFPVALEKWT- 123 (221)
T ss_dssp H------HHHHHHTTCSEEEESCCCC------------HHH-HHHHHHHHHHTT-CCEEEEEEETTTTSCSCHHHHHHH-
T ss_pred H------HHHHHHcCCCEEEEcCCCC------------Chh-HHHHHHHHHhcC-CCeEEEEeeceecCCCCccccccc-
Confidence 6 8889999999999999864 555 999999998875 899999999877653210 00000
Q ss_pred CCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCC
Q psy11859 377 PSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPS 443 (851)
Q Consensus 377 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~ 443 (851)
. ...++.|+.+|..+|.++.. .+++++++|||.|+++
T Consensus 124 ~----------------------------~~~~~~y~~~K~~~e~~~~~--~~i~~~~vrpg~v~~~ 160 (221)
T 3r6d_A 124 F----------------------------DNLPISYVQGERQARNVLRE--SNLNYTILRLTWLYND 160 (221)
T ss_dssp H----------------------------HTSCHHHHHHHHHHHHHHHH--SCSEEEEEEECEEECC
T ss_pred c----------------------------cccccHHHHHHHHHHHHHHh--CCCCEEEEechhhcCC
Confidence 0 00123699999999999875 4899999999999987
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-17 Score=175.68 Aligned_cols=213 Identities=15% Similarity=0.165 Sum_probs=133.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEE-ecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYIL-CRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l-~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
+++|+||||||+|+||++++++|++.| .+|+++ .|.... .+.+.+ .+.. ...++.++.+|+
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G---~~V~~~~~r~~~~---~~~~~~--------~~~~----~~~~~~~~~~D~ 64 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMG---ANIVLNGSPASTS---LDATAE--------EFKA----AGINVVVAKGDV 64 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEECTTCSH---HHHHHH--------HHHH----TTCCEEEEESCT
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCcCHHH---HHHHHH--------HHHh----cCCcEEEEECCC
Confidence 468999999999999999999999998 688888 444321 111111 1111 124789999999
Q ss_pred CCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEE
Q psy11859 295 LQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFI 357 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV 357 (851)
+|++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++... .+..+||
T Consensus 65 ~~~~------~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv 138 (247)
T 2hq1_A 65 KNPE------DVENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKII 138 (247)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 9876 6665554 79999999997642 1345678999999999998887642 1368999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+... ..+. ..|+.||+..|.+++.++. ++++
T Consensus 139 ~~sS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v 180 (247)
T 2hq1_A 139 NITSIAGIIG---------NAGQ-----------------------------ANYAASKAGLIGFTKSIAKEFAAKGIYC 180 (247)
T ss_dssp EECC------------------C-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEcChhhccC---------CCCC-----------------------------cHhHHHHHHHHHHHHHHHHHHHHcCcEE
Confidence 9999643211 0111 3499999999998877643 8999
Q ss_pred EEEecccccCCCCCCch-hHhhhhcCCce-EEEEcccCceeEEEeecC----CCCccEEEEeCC
Q psy11859 433 VIVRPSIVLPSFQEPVP-GWVDSLNGPVG-VLVASGKGVVRSMILNDL----STETQVFNISSN 490 (851)
Q Consensus 433 ~ivRp~~V~G~~~~p~p-~~i~~~~~~~~-~~~~~g~~v~~~~~~~~~----~~~~~iyni~~~ 490 (851)
.+++||.|.++....++ .+.+.+....+ ..++..+++++++..... ...|++||+++|
T Consensus 181 ~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 244 (247)
T 2hq1_A 181 NAVAPGIIKTDMTDVLPDKVKEMYLNNIPLKRFGTPEEVANVVGFLASDDSNYITGQVINIDGG 244 (247)
T ss_dssp EEEEECSBCCHHHHTSCHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EEEEEEEEeccchhhcchHHHHHHHhhCCCCCCCCHHHHHHHHHHHcCcccccccCcEEEeCCC
Confidence 99999999876432222 22222222111 112233455554332211 235778998877
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.8e-18 Score=181.51 Aligned_cols=235 Identities=17% Similarity=0.151 Sum_probs=157.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||+++++.|++.| .+|++++|.... +.+. .+.+.+. .....++.++.+|++
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~------~~~~-----~~~l~~~-~~~~~~~~~~~~Dv~ 73 (281)
T 3svt_A 9 FQDRTYLVTGGGSGIGKGVAAGLVAAG---ASVMIVGRNPDK------LAGA-----VQELEAL-GANGGAIRYEPTDIT 73 (281)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH------HHHH-----HHHHHTT-CCSSCEEEEEECCTT
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH------HHHH-----HHHHHHh-CCCCceEEEEeCCCC
Confidence 678999999999999999999999998 689999886432 1111 1112211 111237899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCC----c----chhHHHHHHHHHHHHHHHHHHHHhcC---CceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLK----L----EAELKENVAANTRGTQRLLDIALKMK---KLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~----~----~~~~~~~~~~Nv~Gt~~ll~~a~~~~---~~~~fV 357 (851)
|++ ++..+++ ++|+|||+||... + .+.++..+++|+.|+.++++++...- +-.++|
T Consensus 74 ~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv 147 (281)
T 3svt_A 74 NED------ETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFV 147 (281)
T ss_dssp SHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 986 6655544 6899999999622 1 23567889999999999999886542 234899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..++.. ..+. ..|+.||+..|.+++.++. ++.+
T Consensus 148 ~isS~~~~~~---------~~~~-----------------------------~~Y~asK~a~~~l~~~la~e~~~~gi~v 189 (281)
T 3svt_A 148 GISSIAASNT---------HRWF-----------------------------GAYGVTKSAVDHLMQLAADELGASWVRV 189 (281)
T ss_dssp EECCHHHHSC---------CTTC-----------------------------THHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEeCHHHcCC---------CCCC-----------------------------hhHHHHHHHHHHHHHHHHHHhhhcCeEE
Confidence 9999765422 1122 3499999999999877643 7999
Q ss_pred EEEecccccCCCCCC---chhHhhhhcCCceE-EEEcccCceeEEEeecC----CCCccEEEEeCCCCcccc-HHHHHHH
Q psy11859 433 VIVRPSIVLPSFQEP---VPGWVDSLNGPVGV-LVASGKGVVRSMILNDL----STETQVFNISSNEVEAIT-WGEIISR 503 (851)
Q Consensus 433 ~ivRp~~V~G~~~~p---~p~~i~~~~~~~~~-~~~~g~~v~~~~~~~~~----~~~~~iyni~~~~~~~~t-~~el~~~ 503 (851)
.+++||.|.++.... .+.+...+....+. -++...++++++..... ...|+++++++| ..++ ..++.+.
T Consensus 190 n~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~~l~s~~~~~itG~~~~vdgG--~~~~~~~~~~~~ 267 (281)
T 3svt_A 190 NSIRPGLIRTDLVAAITESAELSSDYAMCTPLPRQGEVEDVANMAMFLLSDAASFVTGQVINVDGG--QMLRRGPDFSAM 267 (281)
T ss_dssp EEEEECSBCSGGGHHHHTCHHHHHHHHHHCSSSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT--GGGSCCCCCHHH
T ss_pred EEEEeCcCcCcchhhcccCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCcccCCCCCCEEEeCCC--hhcccCCcchhc
Confidence 999999999875432 12222221111110 11223455554332221 236899999988 4455 6678888
Q ss_pred HHHHhhcC
Q psy11859 504 GKQLIYQY 511 (851)
Q Consensus 504 ~~~~~~~~ 511 (851)
+.+.++..
T Consensus 268 ~~~~~~~~ 275 (281)
T 3svt_A 268 LEPVFGRD 275 (281)
T ss_dssp HHHHHCTT
T ss_pred cccccCCc
Confidence 88877753
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.8e-17 Score=168.27 Aligned_cols=164 Identities=22% Similarity=0.266 Sum_probs=125.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... +++++ .++. .++.++.+|++
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G---~~V~~~~r~~~------~~~~~---------~~~~----~~~~~~~~D~~ 62 (244)
T 3d3w_A 5 LAGRRVLVTGAGKGIGRGTVQALHATG---ARVVAVSRTQA------DLDSL---------VREC----PGIEPVCVDLG 62 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH---------HHHS----TTCEEEECCTT
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH---------HHHc----CCCCEEEEeCC
Confidence 578999999999999999999999998 68999988632 22211 1111 24677899999
Q ss_pred CCcCCCCHHHHHHHhc---CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc----CCceEEEEeee
Q psy11859 296 QANLGIKDSDLLMLQE---EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM----KKLVAFIHFST 361 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~---~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~~~~~fV~vST 361 (851)
+++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... +...++|++||
T Consensus 63 ~~~------~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS 136 (244)
T 3d3w_A 63 DWE------ATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSS 136 (244)
T ss_dssp CHH------HHHHHHTTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred CHH------HHHHHHHHcCCCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCc
Confidence 886 7777765 58999999997543 2356788999999999999988653 22578999999
Q ss_pred eeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEe
Q psy11859 362 AFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVR 436 (851)
Q Consensus 362 a~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivR 436 (851)
..++.. ..+. ..|+.||+..|.+++.++. ++++.++|
T Consensus 137 ~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~ 178 (244)
T 3d3w_A 137 QCSQRA---------VTNH-----------------------------SVYCSTKGALDMLTKVMALELGPHKIRVNAVN 178 (244)
T ss_dssp GGGTSC---------CTTB-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred hhhccC---------CCCC-----------------------------chHHHHHHHHHHHHHHHHHHhcccCeEEEEEE
Confidence 755432 1112 3499999999999877642 79999999
Q ss_pred cccccCCCC
Q psy11859 437 PSIVLPSFQ 445 (851)
Q Consensus 437 p~~V~G~~~ 445 (851)
||.|+++..
T Consensus 179 Pg~v~t~~~ 187 (244)
T 3d3w_A 179 PTVVMTSMG 187 (244)
T ss_dssp ECCBTTTTH
T ss_pred eccccccch
Confidence 999998753
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-17 Score=169.93 Aligned_cols=156 Identities=21% Similarity=0.211 Sum_probs=122.7
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++|+||||||||+||++++++|++.| .+|++++|.... +++.++.+|+++
T Consensus 1 ~~k~vlVtGasggiG~~la~~l~~~G---~~V~~~~r~~~~---------------------------~~~~~~~~D~~~ 50 (242)
T 1uay_A 1 MERSALVTGGASGLGRAAALALKARG---YRVVVLDLRREG---------------------------EDLIYVEGDVTR 50 (242)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHT---CEEEEEESSCCS---------------------------SSSEEEECCTTC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEccCccc---------------------------cceEEEeCCCCC
Confidence 36899999999999999999999998 789999987541 145789999998
Q ss_pred CcCCCCHHHHHHHhc------CccEEEEccccCCcc-----------hhHHHHHHHHHHHHHHHHHHHHhcC--------
Q psy11859 297 ANLGIKDSDLLMLQE------EVSVVFNGAASLKLE-----------AELKENVAANTRGTQRLLDIALKMK-------- 351 (851)
Q Consensus 297 ~~lgls~~~~~~~~~------~vd~ViH~AA~~~~~-----------~~~~~~~~~Nv~Gt~~ll~~a~~~~-------- 351 (851)
++ ++..+++ ++|+|||+||..... +.+...+++|+.|+.++++++...-
T Consensus 51 ~~------~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~ 124 (242)
T 1uay_A 51 EE------DVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAE 124 (242)
T ss_dssp HH------HHHHHHHHHHHHSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTT
T ss_pred HH------HHHHHHHHHHhhCCceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCC
Confidence 76 6776665 789999999975432 1677889999999999999987531
Q ss_pred -CceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--
Q psy11859 352 -KLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-- 428 (851)
Q Consensus 352 -~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-- 428 (851)
...+||++||..++.. ..+. ..|+.||+..|.+++.++.
T Consensus 125 ~~~~~iv~~sS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~l~~e~ 166 (242)
T 1uay_A 125 GQRGVIVNTASVAAFEG---------QIGQ-----------------------------AAYAASKGGVVALTLPAAREL 166 (242)
T ss_dssp SCSEEEEEECCTHHHHC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCChhhccC---------CCCC-----------------------------chhhHHHHHHHHHHHHHHHHH
Confidence 1238999999765432 1112 3499999999988866532
Q ss_pred ---CCCEEEEecccccCCCCC
Q psy11859 429 ---KLPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 429 ---~l~~~ivRp~~V~G~~~~ 446 (851)
++++.++|||.|+++...
T Consensus 167 ~~~gi~v~~v~Pg~v~t~~~~ 187 (242)
T 1uay_A 167 AGWGIRVVTVAPGLFDTPLLQ 187 (242)
T ss_dssp GGGTEEEEEEEECSCSSHHHH
T ss_pred hhcCcEEEEEEeccCcchhhh
Confidence 899999999999987543
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.6e-17 Score=169.32 Aligned_cols=169 Identities=15% Similarity=0.146 Sum_probs=124.5
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++|+||||||+|+||++++++|++.| .+|++++|.... .+.+. +.+. .....++.++.+|++|
T Consensus 1 ~~k~vlItGasggiG~~~a~~l~~~G---~~V~~~~r~~~~---~~~~~--------~~~~---~~~~~~~~~~~~D~~~ 63 (250)
T 2cfc_A 1 MSRVAIVTGASSGNGLAIATRFLARG---DRVAALDLSAET---LEETA--------RTHW---HAYADKVLRVRADVAD 63 (250)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHH--------HHHS---TTTGGGEEEEECCTTC
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHH--------HHHH---HhcCCcEEEEEecCCC
Confidence 36899999999999999999999998 689999986421 11111 1110 1112378999999998
Q ss_pred CcCCCCHHHHHHHhc-------CccEEEEccccCCc----------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEE
Q psy11859 297 ANLGIKDSDLLMLQE-------EVSVVFNGAASLKL----------EAELKENVAANTRGTQRLLDIALKM---KKLVAF 356 (851)
Q Consensus 297 ~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~----------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~f 356 (851)
++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++... .+..++
T Consensus 64 ~~------~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~i 137 (250)
T 2cfc_A 64 EG------DVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVI 137 (250)
T ss_dssp HH------HHHHHHHHHHHHHSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEE
Confidence 76 6666654 79999999997532 1356788999999998877776432 136899
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~ 431 (851)
|++||..++... .+. ..|+.||+..|.+++.++. +++
T Consensus 138 v~isS~~~~~~~---------~~~-----------------------------~~Y~~sK~a~~~~~~~l~~e~~~~gi~ 179 (250)
T 2cfc_A 138 VNIASVASLVAF---------PGR-----------------------------SAYTTSKGAVLQLTKSVAVDYAGSGIR 179 (250)
T ss_dssp EEECCGGGTSCC---------TTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEECChhhccCC---------CCc-----------------------------hhHHHHHHHHHHHHHHHHHHhcccCeE
Confidence 999997554321 111 3499999999999877642 899
Q ss_pred EEEEecccccCCCCC
Q psy11859 432 VVIVRPSIVLPSFQE 446 (851)
Q Consensus 432 ~~ivRp~~V~G~~~~ 446 (851)
+.++|||.|+++...
T Consensus 180 v~~v~Pg~v~t~~~~ 194 (250)
T 2cfc_A 180 CNAVCPGMIETPMTQ 194 (250)
T ss_dssp EEEEEECSBCSTTTH
T ss_pred EEEEEeCcCccCccc
Confidence 999999999998653
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-17 Score=169.75 Aligned_cols=156 Identities=19% Similarity=0.199 Sum_probs=120.2
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+||||||+|+||++++++|++. +|++++|... ++.++. +.+ + . +++.+|++|++
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~-----~V~~~~r~~~------~~~~~~-----~~~----~----~-~~~~~D~~~~~ 55 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH-----DLLLSGRRAG------ALAELA-----REV----G----A-RALPADLADEL 55 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS-----EEEEECSCHH------HHHHHH-----HHH----T----C-EECCCCTTSHH
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC-----CEEEEECCHH------HHHHHH-----Hhc----c----C-cEEEeeCCCHH
Confidence 58999999999999999999975 7888888532 221111 111 1 1 78899999886
Q ss_pred CCCCHHHHHHHhc---CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC
Q psy11859 299 LGIKDSDLLMLQE---EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ 368 (851)
Q Consensus 299 lgls~~~~~~~~~---~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~ 368 (851)
++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++.+. +..+||++||..++..
T Consensus 56 ------~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~sS~~~~~~- 127 (207)
T 2yut_A 56 ------EAKALLEEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQ-KGARAVFFGAYPRYVQ- 127 (207)
T ss_dssp ------HHHHHHHHHCSEEEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEE-EEEEEEEECCCHHHHS-
T ss_pred ------HHHHHHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhc-CCcEEEEEcChhhccC-
Confidence 7777777 89999999997643 2356788999999999999999655 3789999999766421
Q ss_pred cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh-----CCCCEEEEecccccCC
Q psy11859 369 KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK-----TKLPVVIVRPSIVLPS 443 (851)
Q Consensus 369 ~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~-----~~l~~~ivRp~~V~G~ 443 (851)
..+. ..|+.||+..|.+++.++ .+++++++|||.|+++
T Consensus 128 --------~~~~-----------------------------~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~ 170 (207)
T 2yut_A 128 --------VPGF-----------------------------AAYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATG 170 (207)
T ss_dssp --------STTB-----------------------------HHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSG
T ss_pred --------CCCc-----------------------------chHHHHHHHHHHHHHHHHHHHhhhCCEEEEEecCcccCC
Confidence 1122 349999999999987764 2899999999999987
Q ss_pred C
Q psy11859 444 F 444 (851)
Q Consensus 444 ~ 444 (851)
.
T Consensus 171 ~ 171 (207)
T 2yut_A 171 L 171 (207)
T ss_dssp G
T ss_pred C
Confidence 4
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-17 Score=173.31 Aligned_cols=209 Identities=15% Similarity=0.141 Sum_probs=122.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|.... +.++ .+.+. ....++.++.+|++
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~G---~~V~~~~r~~~~------~~~~-----~~~~~----~~~~~~~~~~~D~~ 68 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALAREG---AAVVVADINAEA------AEAV-----AKQIV----ADGGTAISVAVDVS 68 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH------HHHH-----HHHHH----HTTCEEEEEECCTT
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEcCCHHH------HHHH-----HHHHH----hcCCcEEEEEccCC
Confidence 578999999999999999999999998 689999886422 1111 11111 12347889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCC----------cchhHHHHHHHHHHHHHHHHHHHH----hcCCce
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLK----------LEAELKENVAANTRGTQRLLDIAL----KMKKLV 354 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~----------~~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~ 354 (851)
|++ ++..+++ ++|+|||+||... -.+.+...+++|+.|+.++.+++. +.+ ..
T Consensus 69 ~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g 141 (253)
T 3qiv_A 69 DPE------SAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRG-GG 141 (253)
T ss_dssp SHH------HHHHHHHHHHHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CC
Confidence 986 6666554 7999999999732 124567889999999777666653 333 57
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~ 429 (851)
++|++||..++. +. ..|+.||+..|.+++.++. +
T Consensus 142 ~iv~isS~~~~~------------~~-----------------------------~~Y~asK~a~~~~~~~la~e~~~~g 180 (253)
T 3qiv_A 142 AIVNQSSTAAWL------------YS-----------------------------NYYGLAKVGINGLTQQLSRELGGRN 180 (253)
T ss_dssp EEEEECC----------------------------------------------------CCHHHHHHHHHHHHHHTTTTT
T ss_pred EEEEECCccccC------------CC-----------------------------chhHHHHHHHHHHHHHHHHHHhhcC
Confidence 899999976541 11 3399999999988876643 7
Q ss_pred CCEEEEecccccCCCCCCc--hhHhhhhcCCceE-EEEcccCceeEEEeecC----CCCccEEEEeCC
Q psy11859 430 LPVVIVRPSIVLPSFQEPV--PGWVDSLNGPVGV-LVASGKGVVRSMILNDL----STETQVFNISSN 490 (851)
Q Consensus 430 l~~~ivRp~~V~G~~~~p~--p~~i~~~~~~~~~-~~~~g~~v~~~~~~~~~----~~~~~iyni~~~ 490 (851)
+.+.+++||.|.++..... +.+.+.+....+. ..+...++++++..... ...|++|++++|
T Consensus 181 i~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgG 248 (253)
T 3qiv_A 181 IRINAIAPGPIDTEANRTTTPKEMVDDIVKGLPLSRMGTPDDLVGMCLFLLSDEASWITGQIFNVDGG 248 (253)
T ss_dssp EEEEEEEC-------------------------------CCHHHHHHHHHHSGGGTTCCSCEEEC---
T ss_pred eEEEEEEecCCcccchhhcCcHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence 9999999999998865431 2223332222221 12334455554432221 235889999888
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.9e-17 Score=170.53 Aligned_cols=202 Identities=19% Similarity=0.191 Sum_probs=132.5
Q ss_pred CCCEEEEecCccHHHHHHHHHHHH-hCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLR-SCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~-~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++|+||||||+|+||++++++|++ .| .+|++++|... +..++ .+.+... ..++.++.+|++
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g---~~V~~~~r~~~------~~~~~-----~~~l~~~----~~~~~~~~~Dl~ 64 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFS---GDVVLTARDVT------RGQAA-----VQQLQAE----GLSPRFHQLDID 64 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSS---SEEEEEESSHH------HHHHH-----HHHHHHT----TCCCEEEECCTT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcC---CeEEEEeCChH------HHHHH-----HHHHHhc----CCeeEEEECCCC
Confidence 578999999999999999999999 77 68999998642 11111 1112111 247889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEee
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKMK-KLVAFIHFS 360 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~-~~~~fV~vS 360 (851)
+++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++...- ...++|++|
T Consensus 65 ~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s 138 (276)
T 1wma_A 65 DLQ------SIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 138 (276)
T ss_dssp CHH------HHHHHHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence 876 6666655 89999999997532 35567889999999999999997652 124899999
Q ss_pred eeeeeCC---C-cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCC-chhhHHHHHHHHHHHHHh--------
Q psy11859 361 TAFCHPD---Q-KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHP-NSYTFTKRLTETLVDEYK-------- 427 (851)
Q Consensus 361 Ta~~~~~---~-~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-n~Y~~SK~~aE~~v~~~~-------- 427 (851)
|..++.. . ....+.....+.+...+........++......+ ..++| +.|+.||+..|.+++.++
T Consensus 139 S~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~ 216 (276)
T 1wma_A 139 SIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQ--KEGWPSSAYGVTKIGVTVLSRIHARKLSEQRK 216 (276)
T ss_dssp CHHHHHHHHTSCHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCTT--TTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ChhhhcccccCChhHHhhccccccchhhhhhhhhhhhhhhcccccc--cCCCccchhHHHHHHHHHHHHHHHHHhhcccC
Confidence 9765421 0 0011111122333332222222111111111111 11222 689999999998887653
Q ss_pred -CCCCEEEEecccccCCC
Q psy11859 428 -TKLPVVIVRPSIVLPSF 444 (851)
Q Consensus 428 -~~l~~~ivRp~~V~G~~ 444 (851)
.++.+.+++||.|.++.
T Consensus 217 ~~~i~v~~v~PG~v~t~~ 234 (276)
T 1wma_A 217 GDKILLNACCPGWVRTDM 234 (276)
T ss_dssp TSCCEEEEEECCSBCSTT
T ss_pred CCceEEEEecCCccccCc
Confidence 37999999999998764
|
| >2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.9e-18 Score=156.60 Aligned_cols=103 Identities=22% Similarity=0.437 Sum_probs=94.3
Q ss_pred cCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhh---cCCCCCccCCCCCCccc
Q psy11859 714 ENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRS---HFGIKPYPCTLCVKKSL 790 (851)
Q Consensus 714 h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~---H~gekp~~C~~Cgk~f~ 790 (851)
.+++++|+| +.|++.|.....|..|++.|.+++||.|+ .|++.|.+...|..|++. |.++++|.|+.|++.|.
T Consensus 2 s~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~ 77 (124)
T 2dlq_A 2 SSGSSGVEC--PTCHKKFLSKYYLKVHNRKHTGEKPFECP--KCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFR 77 (124)
T ss_dssp CCCCSSCCC--TTTCCCCSSHHHHHHHHHHHSSCCSCBCT--TTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEES
T ss_pred CCCCCCCCC--CCCCCcCCCHHHHHHHHHhCCCCCCeECC--CCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccC
Confidence 367899999 89999999999999999999999999998 899999999999999985 67899999999999764
Q ss_pred cccccCCcccccCcccccccccCCCCCCccChHHHHHHHHhhcCCcchhhhhhHHhhhcC
Q psy11859 791 LAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVHERQKYKMMMKSMRKMKNK 850 (851)
Q Consensus 791 ~~~~~~~H~~~C~k~f~~~~~~~~~~~pf~Ck~~L~~H~r~Htgek~~~C~~c~~~f~~k 850 (851)
. +..|..|+++|++++||.|..|++.|+++
T Consensus 78 ~------------------------------~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 107 (124)
T 2dlq_A 78 R------------------------------RMELRLHMVSHTGEMPYKCSSCSQQFMQK 107 (124)
T ss_dssp S------------------------------HHHHHHHHHHHSSSCSEECSSSCCEESSH
T ss_pred C------------------------------HHHHHHHHHHcCCCCCccCCCccchhCCH
Confidence 3 35899999999999999999999999864
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-17 Score=175.98 Aligned_cols=218 Identities=16% Similarity=0.222 Sum_probs=144.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+|+||||+|+||++++++|++.|. ..|++++|.... +.+++ +.+..+ ..++.++.+|++
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G~--~~v~~~~r~~~~----~~~~~---------l~~~~~--~~~~~~~~~D~~ 65 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENP----TALAE---------LKAINP--KVNITFHTYDVT 65 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCH----HHHHH---------HHHHCT--TSEEEEEECCTT
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEecCchH----HHHHH---------HHHhCC--CceEEEEEEecC
Confidence 4689999999999999999999999983 248888887531 22222 122211 236889999999
Q ss_pred CC-cCCCCHHHHHHHhc-------CccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcC--C----ceEEEEeee
Q psy11859 296 QA-NLGIKDSDLLMLQE-------EVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMK--K----LVAFIHFST 361 (851)
Q Consensus 296 ~~-~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~--~----~~~fV~vST 361 (851)
|+ + ++..+++ ++|+|||+||... .+.++..+++|+.|+.++++++...- + -.++|++||
T Consensus 66 ~~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS 138 (254)
T 1sby_A 66 VPVA------ESKKLLKKIFDQLKTVDILINGAGILD-DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICS 138 (254)
T ss_dssp SCHH------HHHHHHHHHHHHHSCCCEEEECCCCCC-TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred CChH------HHHHHHHHHHHhcCCCCEEEECCccCC-HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECc
Confidence 87 5 4444443 7999999999754 45678899999999999999987531 0 357999999
Q ss_pred eeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEe
Q psy11859 362 AFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVR 436 (851)
Q Consensus 362 a~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivR 436 (851)
..++.. .|. ...|+.||+..|.+++.++. ++.+.+++
T Consensus 139 ~~~~~~----------~~~----------------------------~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~ 180 (254)
T 1sby_A 139 VTGFNA----------IHQ----------------------------VPVYSASKAAVVSFTNSLAKLAPITGVTAYSIN 180 (254)
T ss_dssp GGGTSC----------CTT----------------------------SHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEE
T ss_pred hhhccC----------CCC----------------------------chHHHHHHHHHHHHHHHHHHHhccCCeEEEEEe
Confidence 765421 111 13499999999998876542 89999999
Q ss_pred cccccCCCCCCchhH------hhhhcCCceEEEEcccCceeEEEeec-CCCCccEEEEeCCCCccccH
Q psy11859 437 PSIVLPSFQEPVPGW------VDSLNGPVGVLVASGKGVVRSMILND-LSTETQVFNISSNEVEAITW 497 (851)
Q Consensus 437 p~~V~G~~~~p~p~~------i~~~~~~~~~~~~~g~~v~~~~~~~~-~~~~~~iyni~~~~~~~~t~ 497 (851)
||.|.++.....+.+ ...+....+. ....++++.+.... ....|.+|++++|...+++|
T Consensus 181 Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~dvA~~i~~~~~~~~~G~~~~v~gG~~~~~~~ 246 (254)
T 1sby_A 181 PGITRTPLVHTFNSWLDVEPRVAELLLSHPT--QTSEQCGQNFVKAIEANKNGAIWKLDLGTLEAIEW 246 (254)
T ss_dssp ECSEESHHHHSCCCGGGSCTTHHHHHTTSCC--EEHHHHHHHHHHHHHHCCTTCEEEEETTEEEECCC
T ss_pred cCCccCccccccchhhhhhHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCCCCCEEEEeCCceeEecc
Confidence 999988743221111 1111111121 12344444433222 24467889998874334443
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-17 Score=175.07 Aligned_cols=213 Identities=14% Similarity=0.140 Sum_probs=140.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEec-CCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCR-AKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R-~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
+++|+||||||+|+||+++++.|++.| .+|++++| ... ++.++ .+.+.... ..++.++.+|+
T Consensus 9 ~~~k~~lVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~------~~~~~-----~~~~~~~~---~~~~~~~~~Dl 71 (276)
T 1mxh_A 9 SECPAAVITGGARRIGHSIAVRLHQQG---FRVVVHYRHSEG------AAQRL-----VAELNAAR---AGSAVLCKGDL 71 (276)
T ss_dssp --CCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHH------HHHHH-----HHHHHHHS---TTCEEEEECCC
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCChH------HHHHH-----HHHHHHhc---CCceEEEeccC
Confidence 578999999999999999999999998 78999998 421 22111 11121110 24788999999
Q ss_pred CCC----cCCCCHHHHHHHhc-------CccEEEEccccCCcc------------------hhHHHHHHHHHHHHHHHHH
Q psy11859 295 LQA----NLGIKDSDLLMLQE-------EVSVVFNGAASLKLE------------------AELKENVAANTRGTQRLLD 345 (851)
Q Consensus 295 ~~~----~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~------------------~~~~~~~~~Nv~Gt~~ll~ 345 (851)
+++ + ++..+++ ++|+|||+||..... +.++..+++|+.|+.++++
T Consensus 72 ~~~~~~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~ 145 (276)
T 1mxh_A 72 SLSSSLLD------CCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIR 145 (276)
T ss_dssp SSSTTHHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHH
T ss_pred CCccccHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHH
Confidence 998 5 5555544 799999999965321 5566789999999999999
Q ss_pred HHHhcC--Cc------eEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHH
Q psy11859 346 IALKMK--KL------VAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKR 417 (851)
Q Consensus 346 ~a~~~~--~~------~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~ 417 (851)
++...- +. .++|++||..++.. ..+. ..|+.||+
T Consensus 146 ~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------~~~~-----------------------------~~Y~asK~ 187 (276)
T 1mxh_A 146 AFARRQGEGGAWRSRNLSVVNLCDAMTDLP---------LPGF-----------------------------CVYTMAKH 187 (276)
T ss_dssp HHHHTC-------CCCEEEEEECCGGGGSC---------CTTC-----------------------------HHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCcEEEEECchhhcCC---------CCCC-----------------------------eehHHHHH
Confidence 998641 23 79999999765431 1111 24999999
Q ss_pred HHHHHHHHHhC-----CCCEEEEecccccCCCCCCchhHhhhhcCCceE-E-EEcccCceeEEEeecC----CCCccEEE
Q psy11859 418 LTETLVDEYKT-----KLPVVIVRPSIVLPSFQEPVPGWVDSLNGPVGV-L-VASGKGVVRSMILNDL----STETQVFN 486 (851)
Q Consensus 418 ~aE~~v~~~~~-----~l~~~ivRp~~V~G~~~~p~p~~i~~~~~~~~~-~-~~~g~~v~~~~~~~~~----~~~~~iyn 486 (851)
..|.+++.++. ++.+.+++||.|.++ ....+.+...+....+. - .+...++++.+..... ...|++++
T Consensus 188 a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~~~~~~~~~~~~~~~p~~r~~~~~~dva~~v~~l~s~~~~~~tG~~~~ 266 (276)
T 1mxh_A 188 ALGGLTRAAALELAPRHIRVNAVAPGLSLLP-PAMPQETQEEYRRKVPLGQSEASAAQIADAIAFLVSKDAGYITGTTLK 266 (276)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-SSSCHHHHHHHHTTCTTTSCCBCHHHHHHHHHHHHSGGGTTCCSCEEE
T ss_pred HHHHHHHHHHHHHhhcCeEEEEEecCcccCC-ccCCHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhCccccCccCcEEE
Confidence 99998876542 899999999999998 32223333332221111 0 1223344443332211 22567888
Q ss_pred EeCC
Q psy11859 487 ISSN 490 (851)
Q Consensus 487 i~~~ 490 (851)
+++|
T Consensus 267 vdgG 270 (276)
T 1mxh_A 267 VDGG 270 (276)
T ss_dssp ESTT
T ss_pred ECCc
Confidence 8776
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-16 Score=167.27 Aligned_cols=203 Identities=15% Similarity=0.185 Sum_probs=144.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||+++++.|++.| .+|++++|..... ...++.++.+|++
T Consensus 26 ~~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~------------------------~~~~~~~~~~Dv~ 78 (260)
T 3un1_A 26 NQQKVVVITGASQGIGAGLVRAYRDRN---YRVVATSRSIKPS------------------------ADPDIHTVAGDIS 78 (260)
T ss_dssp TTCCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESSCCCC------------------------SSTTEEEEESCTT
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCChhhc------------------------ccCceEEEEccCC
Confidence 578999999999999999999999998 7899999976432 1127889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHH----hcCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIAL----KMKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV 357 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++. +. +..++|
T Consensus 79 d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv 151 (260)
T 3un1_A 79 KPE------TADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQ-GSGHIV 151 (260)
T ss_dssp SHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred CHH------HHHHHHHHHHHHCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEE
Confidence 986 6666654 79999999997542 24567889999999999999883 33 368999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+.... ...+. ..|+.||+..|.+.+.++. ++++
T Consensus 152 ~isS~~~~~~~-------~~~~~-----------------------------~~Y~~sKaa~~~l~~~la~e~~~~gI~v 195 (260)
T 3un1_A 152 SITTSLVDQPM-------VGMPS-----------------------------ALASLTKGGLNAVTRSLAMEFSRSGVRV 195 (260)
T ss_dssp EECCTTTTSCB-------TTCCC-----------------------------HHHHHHHHHHHHHHHHHHHHTTTTTEEE
T ss_pred EEechhhccCC-------CCCcc-----------------------------HHHHHHHHHHHHHHHHHHHHhCcCCeEE
Confidence 99996543211 11122 3499999999998876643 7999
Q ss_pred EEEecccccCCCCCCchhHhhhhcCCceE-EEEcccCceeEEEeecC--CCCccEEEEeCC
Q psy11859 433 VIVRPSIVLPSFQEPVPGWVDSLNGPVGV-LVASGKGVVRSMILNDL--STETQVFNISSN 490 (851)
Q Consensus 433 ~ivRp~~V~G~~~~p~p~~i~~~~~~~~~-~~~~g~~v~~~~~~~~~--~~~~~iyni~~~ 490 (851)
.+++||.|.++...+. ....+....+. -++...|+++++...++ ...|+++++++|
T Consensus 196 n~v~PG~v~t~~~~~~--~~~~~~~~~p~~r~~~~~dva~av~~L~~~~~itG~~i~vdGG 254 (260)
T 3un1_A 196 NAVSPGVIKTPMHPAE--THSTLAGLHPVGRMGEIRDVVDAVLYLEHAGFITGEILHVDGG 254 (260)
T ss_dssp EEEEECCBCCTTSCGG--GHHHHHTTSTTSSCBCHHHHHHHHHHHHHCTTCCSCEEEESTT
T ss_pred EEEeecCCCCCCCCHH--HHHHHhccCCCCCCcCHHHHHHHHHHhcccCCCCCcEEEECCC
Confidence 9999999999865431 11111111110 11223455554433222 346789999887
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=169.81 Aligned_cols=221 Identities=13% Similarity=0.089 Sum_probs=146.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|.... ..+.+.+ +.+. ...++.++.+|++
T Consensus 12 ~~~k~vlITGasggiG~~~a~~l~~~G---~~V~~~~r~~~~--~~~~~~~---------l~~~---~~~~~~~~~~Dl~ 74 (265)
T 1h5q_A 12 FVNKTIIVTGGNRGIGLAFTRAVAAAG---ANVAVIYRSAAD--AVEVTEK---------VGKE---FGVKTKAYQCDVS 74 (265)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTT---EEEEEEESSCTT--HHHHHHH---------HHHH---HTCCEEEEECCTT
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC---CeEEEEeCcchh--hHHHHHH---------HHHh---cCCeeEEEEeeCC
Confidence 578999999999999999999999998 789999996543 1221211 1111 1247899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc----CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM----KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~~~~~fV 357 (851)
|++ ++..+++ .+|+|||+||.... .+.+...+++|+.|+.++++++... +...+||
T Consensus 75 ~~~------~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv 148 (265)
T 1h5q_A 75 NTD------IVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIV 148 (265)
T ss_dssp CHH------HHHHHHHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEE
Confidence 876 5555443 48999999997543 2356678999999999999998653 2247899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+...... +.....|. ..|+.||+..|.+++.++. ++++
T Consensus 149 ~~sS~~~~~~~~~--~~~~~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v 197 (265)
T 1h5q_A 149 VTSSMSSQIINQS--SLNGSLTQ-----------------------------VFYNSSKAACSNLVKGLAAEWASAGIRV 197 (265)
T ss_dssp EECCGGGTSCCEE--ETTEECSC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EeCCchhhccccc--cccccccc-----------------------------cccHHHHHHHHHHHHHHHHHHHhcCcEE
Confidence 9999765432110 00001112 3499999999999877642 8999
Q ss_pred EEEecccccCCCCCCc-hhHhhhhcCCceE-EEEcccCceeEEEeecC----CCCccEEEEeCC
Q psy11859 433 VIVRPSIVLPSFQEPV-PGWVDSLNGPVGV-LVASGKGVVRSMILNDL----STETQVFNISSN 490 (851)
Q Consensus 433 ~ivRp~~V~G~~~~p~-p~~i~~~~~~~~~-~~~~g~~v~~~~~~~~~----~~~~~iyni~~~ 490 (851)
.++|||.|.++..... +.+...+....+. -++...++++++..... ...|++|++++|
T Consensus 198 ~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 261 (265)
T 1h5q_A 198 NALSPGYVNTDQTAHMDKKIRDHQASNIPLNRFAQPEEMTGQAILLLSDHATYMTGGEYFIDGG 261 (265)
T ss_dssp EEEEECSBCCGGGGGSCHHHHHHHHHTCTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTT
T ss_pred EEEecCccccccccccchhHHHHHHhcCcccCCCCHHHHHHHHHhhccCchhcCcCcEEEecCC
Confidence 9999999998864432 2222222111110 02234555554433221 246788999887
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.5e-17 Score=169.77 Aligned_cols=169 Identities=17% Similarity=0.213 Sum_probs=123.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... +.+.++ .+.+.. ...++.++.+|++
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G---~~V~~~~r~~~-----~~~~~~-----~~~l~~----~~~~~~~~~~D~~ 67 (261)
T 1gee_A 5 LEGKVVVITGSSTGLGKSMAIRFATEK---AKVVVNYRSKE-----DEANSV-----LEEIKK----VGGEAIAVKGDVT 67 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCH-----HHHHHH-----HHHHHH----TTCEEEEEECCTT
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEcCCCh-----HHHHHH-----HHHHHh----cCCceEEEECCCC
Confidence 578999999999999999999999998 68999998321 111111 111111 1246889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc----CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM----KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~~~~~fV 357 (851)
+++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++... +...++|
T Consensus 68 ~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv 141 (261)
T 1gee_A 68 VES------DVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVI 141 (261)
T ss_dssp SHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 876 6665554 79999999997543 2456788999999999998887653 1146999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~ 432 (851)
++||..+... ..+. ..|+.||+..|.++..++ . ++++
T Consensus 142 ~isS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v 183 (261)
T 1gee_A 142 NMSSVHEKIP---------WPLF-----------------------------VHYAASKGGMKLMTETLALEYAPKGIRV 183 (261)
T ss_dssp EECCGGGTSC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTCEE
T ss_pred EeCCHHhcCC---------CCCc-----------------------------cHHHHHHHHHHHHHHHHHHHhcccCeEE
Confidence 9999644321 1122 349999988888776653 2 8999
Q ss_pred EEEecccccCCCC
Q psy11859 433 VIVRPSIVLPSFQ 445 (851)
Q Consensus 433 ~ivRp~~V~G~~~ 445 (851)
.++|||.|+++..
T Consensus 184 ~~v~Pg~v~t~~~ 196 (261)
T 1gee_A 184 NNIGPGAINTPIN 196 (261)
T ss_dssp EEEEECSBCSGGG
T ss_pred EEEeeCCcCCchh
Confidence 9999999999854
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.2e-16 Score=165.37 Aligned_cols=176 Identities=22% Similarity=0.274 Sum_probs=127.7
Q ss_pred hhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEE
Q psy11859 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIE 291 (851)
Q Consensus 212 i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~ 291 (851)
....+++|+||||||+|+||++++++|++.|....+|++++|...... .+.++ ... ..++.++.
T Consensus 15 ~~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~---~~~~l---------~~~----~~~~~~~~ 78 (267)
T 1sny_A 15 VPRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK---ELEDL---------AKN----HSNIHILE 78 (267)
T ss_dssp -----CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH---HHHHH---------HHH----CTTEEEEE
T ss_pred cccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhH---HHHHh---------hcc----CCceEEEE
Confidence 445578899999999999999999999998744458999999765432 22221 111 24789999
Q ss_pred cCCCCCcCCCCHHHHHHHhc---------CccEEEEccccCC----c----chhHHHHHHHHHHHHHHHHHHHHhcC---
Q psy11859 292 GDILQANLGIKDSDLLMLQE---------EVSVVFNGAASLK----L----EAELKENVAANTRGTQRLLDIALKMK--- 351 (851)
Q Consensus 292 gDi~~~~lgls~~~~~~~~~---------~vd~ViH~AA~~~----~----~~~~~~~~~~Nv~Gt~~ll~~a~~~~--- 351 (851)
+|+++++ ++..+++ ++|+|||+||... + .+.+...+++|+.|+.++++++...-
T Consensus 79 ~Dl~~~~------~v~~~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~ 152 (267)
T 1sny_A 79 IDLRNFD------AYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKA 152 (267)
T ss_dssp CCTTCGG------GHHHHHHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred ecCCChH------HHHHHHHHHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhc
Confidence 9999987 6666554 7999999999765 1 24567789999999999999986541
Q ss_pred ------C-----ceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHH
Q psy11859 352 ------K-----LVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTE 420 (851)
Q Consensus 352 ------~-----~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE 420 (851)
. ..++|++||..++.... ...+. ..|+.||+..|
T Consensus 153 ~~~~~~~~~~~~~~~iv~isS~~~~~~~~------~~~~~-----------------------------~~Y~~sK~a~~ 197 (267)
T 1sny_A 153 AKANESQPMGVGRAAIINMSSILGSIQGN------TDGGM-----------------------------YAYRTSKSALN 197 (267)
T ss_dssp HHHTTTSCSSTTTCEEEEECCGGGCSTTC------CSCCC-----------------------------HHHHHHHHHHH
T ss_pred ccccccccccCCCceEEEEecccccccCC------CCCCc-----------------------------hHHHHHHHHHH
Confidence 0 36899999976543211 00112 34999999999
Q ss_pred HHHHHHhC-----CCCEEEEecccccCCC
Q psy11859 421 TLVDEYKT-----KLPVVIVRPSIVLPSF 444 (851)
Q Consensus 421 ~~v~~~~~-----~l~~~ivRp~~V~G~~ 444 (851)
.+++.++. ++++.++|||.|-.+.
T Consensus 198 ~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 226 (267)
T 1sny_A 198 AATKSLSVDLYPQRIMCVSLHPGWVKTDM 226 (267)
T ss_dssp HHHHHHHHHHGGGTCEEEEECCCSBCSTT
T ss_pred HHHHHHHHHhhcCCcEEEEeCCcceecCC
Confidence 99876542 8999999999997654
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.70 E-value=6e-17 Score=168.87 Aligned_cols=154 Identities=14% Similarity=0.147 Sum_probs=110.8
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
..|+||||||||+||++|+++|++.|. ..|++++|...... .....+++++.+|++|
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~G~--~~V~~~~R~~~~~~---------------------~~~~~~~~~~~~Dl~d 78 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADKQT--IKQTLFARQPAKIH---------------------KPYPTNSQIIMGDVLN 78 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTT--EEEEEEESSGGGSC---------------------SSCCTTEEEEECCTTC
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhCCC--ceEEEEEcChhhhc---------------------ccccCCcEEEEecCCC
Confidence 457899999999999999999999873 58999999754321 0112478999999998
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcc----cc
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKV----LE 372 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~----i~ 372 (851)
++ ++..+++++|+|||+|+...+. .+++++++++++.+ +++||++||+.+++.... ..
T Consensus 79 ~~------~~~~~~~~~D~vv~~a~~~~~~-----------~~~~~~~~~~~~~~-~~~iV~iSS~~~~~~~~~~~~~~~ 140 (236)
T 3qvo_A 79 HA------ALKQAMQGQDIVYANLTGEDLD-----------IQANSVIAAMKACD-VKRLIFVLSLGIYDEVPGKFVEWN 140 (236)
T ss_dssp HH------HHHHHHTTCSEEEEECCSTTHH-----------HHHHHHHHHHHHTT-CCEEEEECCCCC------------
T ss_pred HH------HHHHHhcCCCEEEEcCCCCchh-----------HHHHHHHHHHHHcC-CCEEEEEecceecCCCCcccccch
Confidence 86 8999999999999999864321 35779999998885 899999999888764321 11
Q ss_pred cccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCC
Q psy11859 373 EKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 373 E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~ 446 (851)
|.. +..+...+..+|..+. ..+++++++|||.|+++...
T Consensus 141 ~~~---------------------------------~~~~~~~~~~~~~~l~--~~gi~~~~vrPg~i~~~~~~ 179 (236)
T 3qvo_A 141 NAV---------------------------------IGEPLKPFRRAADAIE--ASGLEYTILRPAWLTDEDII 179 (236)
T ss_dssp -------------------------------------CGGGHHHHHHHHHHH--TSCSEEEEEEECEEECCSCC
T ss_pred hhc---------------------------------ccchHHHHHHHHHHHH--HCCCCEEEEeCCcccCCCCc
Confidence 110 1123344555666654 24899999999999987543
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=9.1e-17 Score=171.03 Aligned_cols=168 Identities=18% Similarity=0.173 Sum_probs=125.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... +.+.++ .+.+.. ...++.++.+|++
T Consensus 19 ~~~k~vlItGasggiG~~la~~l~~~G---~~v~~~~r~~~-----~~~~~~-----~~~l~~----~~~~~~~~~~D~~ 81 (274)
T 1ja9_A 19 LAGKVALTTGAGRGIGRGIAIELGRRG---ASVVVNYGSSS-----KAAEEV-----VAELKK----LGAQGVAIQADIS 81 (274)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSCH-----HHHHHH-----HHHHHH----TTCCEEEEECCTT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEcCCch-----HHHHHH-----HHHHHh----cCCcEEEEEecCC
Confidence 578999999999999999999999998 68999988421 111111 111211 1247889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEee
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKMK-KLVAFIHFS 360 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~-~~~~fV~vS 360 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++...- .-.+||++|
T Consensus 82 ~~~------~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~s 155 (274)
T 1ja9_A 82 KPS------EVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS 155 (274)
T ss_dssp SHH------HHHHHHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEc
Confidence 876 6666655 89999999997542 23466889999999999999987641 016899999
Q ss_pred eeeee-CCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 361 TAFCH-PDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 361 Ta~~~-~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
|..++ .. ..+. ..|+.||+..|.+++.++. ++.+.+
T Consensus 156 S~~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~ 197 (274)
T 1ja9_A 156 SIAAVMTG---------IPNH-----------------------------ALYAGSKAAVEGFCRAFAVDCGAKGVTVNC 197 (274)
T ss_dssp CGGGTCCS---------CCSC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEE
T ss_pred ChHhccCC---------CCCC-----------------------------chHHHHHHHHHHHHHHHHHHhhhcCeEEEE
Confidence 97654 21 1111 3499999999999877642 899999
Q ss_pred EecccccCCC
Q psy11859 435 VRPSIVLPSF 444 (851)
Q Consensus 435 vRp~~V~G~~ 444 (851)
+|||.|.++.
T Consensus 198 v~Pg~v~t~~ 207 (274)
T 1ja9_A 198 IAPGGVKTDM 207 (274)
T ss_dssp EEECCBSSHH
T ss_pred EeeCcccccc
Confidence 9999998764
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.9e-17 Score=163.15 Aligned_cols=146 Identities=14% Similarity=0.193 Sum_probs=115.7
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+||||||+|+||++++++|+ .| .+|++++|... .+.+|+++++
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g---~~V~~~~r~~~--------------------------------~~~~D~~~~~ 47 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KK---AEVITAGRHSG--------------------------------DVTVDITNID 47 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TT---SEEEEEESSSS--------------------------------SEECCTTCHH
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CC---CeEEEEecCcc--------------------------------ceeeecCCHH
Confidence 489999999999999999999 87 78999988642 3689999876
Q ss_pred CCCCHHHHHHHhc---CccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEeeeeeeeCC
Q psy11859 299 LGIKDSDLLMLQE---EVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKMK-KLVAFIHFSTAFCHPD 367 (851)
Q Consensus 299 lgls~~~~~~~~~---~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~~-~~~~fV~vSTa~~~~~ 367 (851)
++..+++ ++|+|||+||..... +.+...+++|+.|+.++++++...- .-.+||++||.+++..
T Consensus 48 ------~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~ 121 (202)
T 3d7l_A 48 ------SIKKMYEQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMEDP 121 (202)
T ss_dssp ------HHHHHHHHHCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTSC
T ss_pred ------HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcCC
Confidence 6666665 489999999965321 3456778999999999999997651 1268999999755321
Q ss_pred CcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----CCCEEEEecccccCC
Q psy11859 368 QKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----KLPVVIVRPSIVLPS 443 (851)
Q Consensus 368 ~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----~l~~~ivRp~~V~G~ 443 (851)
..+. ..|+.||+..|.+++.++. ++++.++||+.|+++
T Consensus 122 ---------~~~~-----------------------------~~Y~~sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~ 163 (202)
T 3d7l_A 122 ---------IVQG-----------------------------ASAAMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEES 163 (202)
T ss_dssp ---------CTTC-----------------------------HHHHHHHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGG
T ss_pred ---------CCcc-----------------------------HHHHHHHHHHHHHHHHHHHHccCCeEEEEEecCccCCc
Confidence 1111 3499999999999988763 799999999999987
Q ss_pred C
Q psy11859 444 F 444 (851)
Q Consensus 444 ~ 444 (851)
.
T Consensus 164 ~ 164 (202)
T 3d7l_A 164 W 164 (202)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.4e-17 Score=169.59 Aligned_cols=169 Identities=20% Similarity=0.216 Sum_probs=124.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.++ .+.+... ...++.++.+|++
T Consensus 5 ~~~~~vlVtGasggiG~~la~~l~~~G---~~V~~~~r~~~------~~~~~-----~~~~~~~---~~~~~~~~~~D~~ 67 (248)
T 2pnf_A 5 LQGKVSLVTGSTRGIGRAIAEKLASAG---STVIITGTSGE------RAKAV-----AEEIANK---YGVKAHGVEMNLL 67 (248)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSHH------HHHHH-----HHHHHHH---HCCCEEEEECCTT
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCChH------HHHHH-----HHHHHhh---cCCceEEEEccCC
Confidence 468999999999999999999999998 78999998632 11111 1111110 1237889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHH----hcCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIAL----KMKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV 357 (851)
|++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++. +. +..+||
T Consensus 68 ~~~------~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv 140 (248)
T 2pnf_A 68 SEE------SINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQ-RWGRIV 140 (248)
T ss_dssp CHH------HHHHHHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHH-TCEEEE
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCcEEE
Confidence 876 6666654 79999999997642 23567889999999977776653 33 368999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+... ..+. ..|+.||+..|.+++.++. ++++
T Consensus 141 ~~sS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~~i~v 182 (248)
T 2pnf_A 141 NISSVVGFTG---------NVGQ-----------------------------VNYSTTKAGLIGFTKSLAKELAPRNVLV 182 (248)
T ss_dssp EECCHHHHHC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEccHHhcCC---------CCCC-----------------------------chHHHHHHHHHHHHHHHHHHhcccCeEE
Confidence 9999644221 0111 3499999999998876542 8999
Q ss_pred EEEecccccCCCCC
Q psy11859 433 VIVRPSIVLPSFQE 446 (851)
Q Consensus 433 ~ivRp~~V~G~~~~ 446 (851)
.++|||.|.++...
T Consensus 183 ~~v~Pg~v~t~~~~ 196 (248)
T 2pnf_A 183 NAVAPGFIETDMTA 196 (248)
T ss_dssp EEEEECSBCCGGGG
T ss_pred EEEEeceecCchhh
Confidence 99999999988644
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=169.88 Aligned_cols=169 Identities=16% Similarity=0.155 Sum_probs=126.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.++ .+.+... ...++.++.+|++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~------~~~~~-----~~~l~~~---~~~~~~~~~~D~~ 67 (263)
T 3ai3_A 5 ISGKVAVITGSSSGIGLAIAEGFAKEG---AHIVLVARQVD------RLHEA-----ARSLKEK---FGVRVLEVAVDVA 67 (263)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHHHH---HCCCEEEEECCTT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCCHH------HHHHH-----HHHHHHh---cCCceEEEEcCCC
Confidence 468999999999999999999999998 68999998642 12111 1111111 0236889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|+
T Consensus 68 ~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~ 141 (263)
T 3ai3_A 68 TPE------GVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIH 141 (263)
T ss_dssp SHH------HHHHHHHHHHHHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 886 6666654 79999999997542 2456788999999999999988531 13689999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..++... .+. ..|+.||+..|.+++.++. ++++.
T Consensus 142 isS~~~~~~~---------~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~ 183 (263)
T 3ai3_A 142 NASICAVQPL---------WYE-----------------------------PIYNVTKAALMMFSKTLATEVIKDNIRVN 183 (263)
T ss_dssp ECCGGGTSCC---------TTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred ECchhhcCCC---------CCc-----------------------------chHHHHHHHHHHHHHHHHHHhhhcCcEEE
Confidence 9997664321 111 2499999999998876542 89999
Q ss_pred EEecccccCCCC
Q psy11859 434 IVRPSIVLPSFQ 445 (851)
Q Consensus 434 ivRp~~V~G~~~ 445 (851)
++|||.|++|..
T Consensus 184 ~v~Pg~v~t~~~ 195 (263)
T 3ai3_A 184 CINPGLILTPDW 195 (263)
T ss_dssp EEEECCBCCHHH
T ss_pred EEecCcccCcch
Confidence 999999998753
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.69 E-value=5.5e-17 Score=169.75 Aligned_cols=166 Identities=17% Similarity=0.215 Sum_probs=121.8
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEE-ecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYIL-CRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l-~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
||+||||||||+||++++++|++.| .+|+++ .|.... .+.+. +.+.. ...++.++.+|+++
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G---~~v~~~~~r~~~~---~~~~~--------~~~~~----~~~~~~~~~~D~~~ 62 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAG---CKVLVNYARSAKA---AEEVS--------KQIEA----YGGQAITFGGDVSK 62 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHHH---HHHHH--------HHHHH----HTCEEEEEECCTTS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEcCCCHHH---HHHHH--------HHHHh----cCCcEEEEeCCCCC
Confidence 5899999999999999999999998 677774 564321 11111 11111 12368899999998
Q ss_pred CcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEe
Q psy11859 297 ANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHF 359 (851)
Q Consensus 297 ~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~v 359 (851)
++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..+||++
T Consensus 63 ~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ 136 (244)
T 1edo_A 63 EA------DVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINI 136 (244)
T ss_dssp HH------HHHHHHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 76 6666654 79999999997643 2456788999999999999998753 236899999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..+... ..+. ..|+.||+..|.+++.++. ++++.+
T Consensus 137 sS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~ 178 (244)
T 1edo_A 137 ASVVGLIG---------NIGQ-----------------------------ANYAAAKAGVIGFSKTAAREGASRNINVNV 178 (244)
T ss_dssp CCTHHHHC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHHTTTEEEEE
T ss_pred CChhhcCC---------CCCC-----------------------------ccchhhHHHHHHHHHHHHHHhhhcCCEEEE
Confidence 99644311 1111 3499999998888766532 899999
Q ss_pred EecccccCCCC
Q psy11859 435 VRPSIVLPSFQ 445 (851)
Q Consensus 435 vRp~~V~G~~~ 445 (851)
+|||.|.++..
T Consensus 179 v~Pg~v~t~~~ 189 (244)
T 1edo_A 179 VCPGFIASDMT 189 (244)
T ss_dssp EEECSBCSHHH
T ss_pred EeeCccccchh
Confidence 99999998753
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.69 E-value=7.3e-17 Score=171.12 Aligned_cols=215 Identities=18% Similarity=0.196 Sum_probs=142.3
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
.+|+||||||+|+||++++++|++.| .+|+++.|.... ..+.+.+ .......++.++.+|+++
T Consensus 6 ~~k~vlVTGas~gIG~~~a~~l~~~G---~~v~~~~~~~~~--~~~~~~~------------~~~~~~~~~~~~~~Dl~~ 68 (264)
T 3i4f_A 6 FVRHALITAGTKGLGKQVTEKLLAKG---YSVTVTYHSDTT--AMETMKE------------TYKDVEERLQFVQADVTK 68 (264)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHHH------------HTGGGGGGEEEEECCTTS
T ss_pred ccCEEEEeCCCchhHHHHHHHHHHCC---CEEEEEcCCChH--HHHHHHH------------HHHhcCCceEEEEecCCC
Confidence 46899999999999999999999998 688888776432 1222222 112223479999999999
Q ss_pred CcCCCCHHHHHHHhc-------CccEEEEccccC-----Cc----chhHHHHHHHHHHHHHHHHHHH----HhcCCceEE
Q psy11859 297 ANLGIKDSDLLMLQE-------EVSVVFNGAASL-----KL----EAELKENVAANTRGTQRLLDIA----LKMKKLVAF 356 (851)
Q Consensus 297 ~~lgls~~~~~~~~~-------~vd~ViH~AA~~-----~~----~~~~~~~~~~Nv~Gt~~ll~~a----~~~~~~~~f 356 (851)
++ ++..+++ ++|+|||+||.. .+ .+.+...+++|+.|+.++++++ ++. +..++
T Consensus 69 ~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~i 141 (264)
T 3i4f_A 69 KE------DLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQ-NFGRI 141 (264)
T ss_dssp HH------HHHHHHHHHHHHHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEE
T ss_pred HH------HHHHHHHHHHHHhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCCeE
Confidence 86 6666554 799999999932 11 2456788999999999999998 444 36899
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~ 431 (851)
|++||..+.+.. ...+. ..|+.||+..|.+++.++. +++
T Consensus 142 v~iss~~~~~~~-------~~~~~-----------------------------~~Y~asKaa~~~~~~~la~e~~~~gi~ 185 (264)
T 3i4f_A 142 INYGFQGADSAP-------GWIYR-----------------------------SAFAAAKVGLVSLTKTVAYEEAEYGIT 185 (264)
T ss_dssp EEECCTTGGGCC-------CCTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEeechhcccC-------CCCCC-----------------------------chhHHHHHHHHHHHHHHHHHhhhcCcE
Confidence 999986332110 01111 3499999999988876542 899
Q ss_pred EEEEecccccCCCCCCch-hHhhhhcCCceEE-EEcccCceeEEEeecC----CCCccEEEEeCCC
Q psy11859 432 VVIVRPSIVLPSFQEPVP-GWVDSLNGPVGVL-VASGKGVVRSMILNDL----STETQVFNISSNE 491 (851)
Q Consensus 432 ~~ivRp~~V~G~~~~p~p-~~i~~~~~~~~~~-~~~g~~v~~~~~~~~~----~~~~~iyni~~~~ 491 (851)
+.+++||.|.++.....+ .+...+....+.- ++...++++++..... ...|+++++++|-
T Consensus 186 v~~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdGG~ 251 (264)
T 3i4f_A 186 ANMVCPGDIIGEMKEATIQEARQLKEHNTPIGRSGTGEDIARTISFLCEDDSDMITGTIIEVTGAV 251 (264)
T ss_dssp EEEEEECCCCGGGGSCCHHHHHHC--------CCCCHHHHHHHHHHHHSGGGTTCCSCEEEESCSC
T ss_pred EEEEccCCccCccchhccHHHHHHHhhcCCCCCCcCHHHHHHHHHHHcCcccCCCCCcEEEEcCce
Confidence 999999999998765433 2222222211110 1222455544332221 2358899998883
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-16 Score=169.72 Aligned_cols=164 Identities=18% Similarity=0.184 Sum_probs=123.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.++. +.+ ..++.++.+|++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~------~~~~~~-----~~~-------~~~~~~~~~D~~ 63 (260)
T 1nff_A 5 LTGKVALVSGGARGMGASHVRAMVAEG---AKVVFGDILDE------EGKAMA-----AEL-------ADAARYVHLDVT 63 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH-----HHT-------GGGEEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHHH-----HHh-------hcCceEEEecCC
Confidence 578999999999999999999999998 68999988642 111110 001 124788999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHH----hcCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIAL----KMKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV 357 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++. +.+ ..++|
T Consensus 64 ~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv 136 (260)
T 1nff_A 64 QPA------QWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG-RGSII 136 (260)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEE
Confidence 886 6666665 89999999997543 24567889999999977666653 333 68999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..++... .+. ..|+.||+..|.+++.++. ++++
T Consensus 137 ~isS~~~~~~~---------~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v 178 (260)
T 1nff_A 137 NISSIEGLAGT---------VAC-----------------------------HGYTATKFAVRGLTKSTALELGPSGIRV 178 (260)
T ss_dssp EECCGGGTSCC---------TTB-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEeehhhcCCC---------CCc-----------------------------hhHHHHHHHHHHHHHHHHHHhCccCcEE
Confidence 99997654321 111 2499999999998876542 8999
Q ss_pred EEEecccccCCCC
Q psy11859 433 VIVRPSIVLPSFQ 445 (851)
Q Consensus 433 ~ivRp~~V~G~~~ 445 (851)
.++|||.|+++..
T Consensus 179 ~~v~Pg~v~t~~~ 191 (260)
T 1nff_A 179 NSIHPGLVKTPMT 191 (260)
T ss_dssp EEEEECCBCSGGG
T ss_pred EEEEeCCCCCCcc
Confidence 9999999998754
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.5e-17 Score=171.57 Aligned_cols=215 Identities=14% Similarity=0.164 Sum_probs=148.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||++++++|++.| .+|++++|..... +.+.+ .+. ....++.++.+|++
T Consensus 30 l~gk~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~~---~~~~~--------~~~----~~~~~~~~~~~Dl~ 91 (276)
T 3r1i_A 30 LSGKRALITGASTGIGKKVALAYAEAG---AQVAVAARHSDAL---QVVAD--------EIA----GVGGKALPIRCDVT 91 (276)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESSGGGG---HHHHH--------HHH----HTTCCCEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHH---HHHHH--------HHH----hcCCeEEEEEcCCC
Confidence 679999999999999999999999998 7899999965431 12111 111 12347889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc----CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM----KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~~~~~fV 357 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... +.-.++|
T Consensus 92 d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv 165 (276)
T 3r1i_A 92 QPD------QVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTII 165 (276)
T ss_dssp CHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 986 6666655 79999999997653 2456678999999999999988653 1126899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+.... .+.+. ..|+.||+..+.+++.++. ++.+
T Consensus 166 ~isS~~~~~~~-------~~~~~-----------------------------~~Y~asKaa~~~l~~~la~e~~~~gIrv 209 (276)
T 3r1i_A 166 TTASMSGHIIN-------IPQQV-----------------------------SHYCTSKAAVVHLTKAMAVELAPHQIRV 209 (276)
T ss_dssp EECCGGGTSCC-------CSSCC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECchHhcccC-------CCCCc-----------------------------chHHHHHHHHHHHHHHHHHHHhhcCcEE
Confidence 99997553211 01122 3499999999998876543 8999
Q ss_pred EEEecccccCCCCCCchhHhhhhcCCceE-EEEcccCceeEEEeecC----CCCccEEEEeCC
Q psy11859 433 VIVRPSIVLPSFQEPVPGWVDSLNGPVGV-LVASGKGVVRSMILNDL----STETQVFNISSN 490 (851)
Q Consensus 433 ~ivRp~~V~G~~~~p~p~~i~~~~~~~~~-~~~~g~~v~~~~~~~~~----~~~~~iyni~~~ 490 (851)
.+++||.|..+.....+.+...+....+. -++...++++++..... ...|+++++++|
T Consensus 210 n~v~PG~v~T~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG 272 (276)
T 3r1i_A 210 NSVSPGYIRTELVEPLADYHALWEPKIPLGRMGRPEELTGLYLYLASAASSYMTGSDIVIDGG 272 (276)
T ss_dssp EEEEECCBCSTTTGGGGGGHHHHGGGSTTSSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EEEeeCCCcCCccccchHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCcEEEECcC
Confidence 99999999988766555444332221111 12234566554332221 246789999887
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=167.64 Aligned_cols=165 Identities=15% Similarity=0.161 Sum_probs=125.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|..... .+..+++ ..++.++.+|++
T Consensus 10 ~~~k~vlVTGasggiG~~~a~~l~~~G---~~V~~~~r~~~~~--~~~~~~~----------------~~~~~~~~~D~~ 68 (265)
T 2o23_A 10 VKGLVAVITGGASGLGLATAERLVGQG---ASAVLLDLPNSGG--EAQAKKL----------------GNNCVFAPADVT 68 (265)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECTTSSH--HHHHHHH----------------CTTEEEEECCTT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCcHhH--HHHHHHh----------------CCceEEEEcCCC
Confidence 578999999999999999999999998 6899999976431 1111111 237899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------------chhHHHHHHHHHHHHHHHHHHHHhc---C-
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------------EAELKENVAANTRGTQRLLDIALKM---K- 351 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~- 351 (851)
+++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++... .
T Consensus 69 ~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~ 142 (265)
T 2o23_A 69 SEK------DVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNE 142 (265)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC
T ss_pred CHH------HHHHHHHHHHHHCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc
Confidence 876 6666665 89999999997532 2356788999999999999998764 0
Q ss_pred -----CceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHH
Q psy11859 352 -----KLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY 426 (851)
Q Consensus 352 -----~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~ 426 (851)
+..++|++||.+++.. ..+. ..|+.||+..|.+++.+
T Consensus 143 ~~~~~~~~~iv~isS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~l 184 (265)
T 2o23_A 143 PDQGGQRGVIINTASVAAFEG---------QVGQ-----------------------------AAYSASKGGIVGMTLPI 184 (265)
T ss_dssp CCTTSCCEEEEEECCTHHHHC---------CTTC-----------------------------HHHHHHHHHHHHHHHHH
T ss_pred cccCCCCcEEEEeCChhhcCC---------CCCC-----------------------------chhHHHHHHHHHHHHHH
Confidence 3678999999765421 1111 34999999888887665
Q ss_pred hC-----CCCEEEEecccccCCCC
Q psy11859 427 KT-----KLPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 427 ~~-----~l~~~ivRp~~V~G~~~ 445 (851)
+. ++.+.+++||.|.++..
T Consensus 185 a~e~~~~gi~v~~v~Pg~v~t~~~ 208 (265)
T 2o23_A 185 ARDLAPIGIRVMTIAPGLFGTPLL 208 (265)
T ss_dssp HHHHGGGTEEEEEEEECCBCCC--
T ss_pred HHHHhhcCcEEEEEEeccccCccc
Confidence 32 89999999999987743
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=169.34 Aligned_cols=166 Identities=18% Similarity=0.196 Sum_probs=126.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.+.. + ....++.++.+|++
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~------~~~~~~-----~-------~~~~~~~~~~~D~~ 64 (259)
T 4e6p_A 6 LEGKSALITGSARGIGRAFAEAYVREG---ATVAIADIDIE------RARQAA-----A-------EIGPAAYAVQMDVT 64 (259)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH-----H-------HHCTTEEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHHH-----H-------HhCCCceEEEeeCC
Confidence 578999999999999999999999998 68899888532 222111 0 11236889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhcC----CceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKMK----KLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~----~~~~fV 357 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++...- .-.++|
T Consensus 65 ~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv 138 (259)
T 4e6p_A 65 RQD------SIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKII 138 (259)
T ss_dssp CHH------HHHHHHHHHHHHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 986 6666655 79999999997543 24567889999999999999886531 135899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+... .|. ...|+.||+..|.+++.++. ++++
T Consensus 139 ~isS~~~~~~----------~~~----------------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v 180 (259)
T 4e6p_A 139 NMASQAGRRG----------EAL----------------------------VAIYCATKAAVISLTQSAGLDLIKHRINV 180 (259)
T ss_dssp EECCGGGTSC----------CTT----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECChhhccC----------CCC----------------------------ChHHHHHHHHHHHHHHHHHHHhhhcCCEE
Confidence 9999755321 111 13499999999999877642 8999
Q ss_pred EEEecccccCCCCC
Q psy11859 433 VIVRPSIVLPSFQE 446 (851)
Q Consensus 433 ~ivRp~~V~G~~~~ 446 (851)
.+++||.|.++...
T Consensus 181 n~v~PG~v~t~~~~ 194 (259)
T 4e6p_A 181 NAIAPGVVDGEHWD 194 (259)
T ss_dssp EEEEECCBCSTTHH
T ss_pred EEEEECCCccchhh
Confidence 99999999998643
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=168.18 Aligned_cols=166 Identities=17% Similarity=0.173 Sum_probs=123.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCe-EEEEcCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRL-HIIEGDI 294 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v-~~v~gDi 294 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.++. +.+ ..++ .++.+|+
T Consensus 9 ~~~k~vlITGasggiG~~la~~l~~~G---~~V~~~~r~~~------~~~~~~-----~~~-------~~~~~~~~~~D~ 67 (254)
T 2wsb_A 9 LDGACAAVTGAGSGIGLEICRAFAASG---ARLILIDREAA------ALDRAA-----QEL-------GAAVAARIVADV 67 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH-----HHH-------GGGEEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHHH-----HHh-------cccceeEEEEec
Confidence 578999999999999999999999998 68999998642 121111 111 1256 8899999
Q ss_pred CCCcCCCCHHHHHHHh------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHH----hcCCceEEE
Q psy11859 295 LQANLGIKDSDLLMLQ------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIAL----KMKKLVAFI 357 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV 357 (851)
+|++ ++..++ .++|+|||+||.... .+.++..+++|+.|+.++++++. +. +..+||
T Consensus 68 ~~~~------~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv 140 (254)
T 2wsb_A 68 TDAE------AMTAAAAEAEAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVAR-GAGAIV 140 (254)
T ss_dssp TCHH------HHHHHHHHHHHHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEE
T ss_pred CCHH------HHHHHHHHHHhhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEE
Confidence 9876 565554 479999999997543 23467889999999888777664 33 368999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..++... |..+ ...|+.||+..|.+++.++. ++++
T Consensus 141 ~isS~~~~~~~----------~~~~--------------------------~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v 184 (254)
T 2wsb_A 141 NLGSMSGTIVN----------RPQF--------------------------ASSYMASKGAVHQLTRALAAEWAGRGVRV 184 (254)
T ss_dssp EECCGGGTSCC----------SSSC--------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEecchhccCC----------CCCc--------------------------chHHHHHHHHHHHHHHHHHHHHhhcCeEE
Confidence 99997654321 1111 13499999999998876542 8999
Q ss_pred EEEecccccCCCC
Q psy11859 433 VIVRPSIVLPSFQ 445 (851)
Q Consensus 433 ~ivRp~~V~G~~~ 445 (851)
.++|||.|+++..
T Consensus 185 ~~v~Pg~v~t~~~ 197 (254)
T 2wsb_A 185 NALAPGYVATEMT 197 (254)
T ss_dssp EEEEECCBCSHHH
T ss_pred EEEEecccCchhh
Confidence 9999999998753
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-16 Score=167.32 Aligned_cols=167 Identities=19% Similarity=0.213 Sum_probs=124.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.++ .+.+.. ...++.++.+|++
T Consensus 7 l~~k~vlVTGas~giG~~ia~~l~~~G---~~V~~~~r~~~------~~~~~-----~~~~~~----~~~~~~~~~~D~~ 68 (260)
T 2ae2_A 7 LEGCTALVTGGSRGIGYGIVEELASLG---ASVYTCSRNQK------ELNDC-----LTQWRS----KGFKVEASVCDLS 68 (260)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHHH----TTCEEEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH-----HHHHHh----cCCcEEEEEcCCC
Confidence 578999999999999999999999998 68999988642 12111 111211 1236889999999
Q ss_pred CCcCCCCHHHHHHHh--------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh---cCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQ--------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK---MKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~--------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~---~~~~~~fV 357 (851)
|++ ++..++ .++|+|||+||.... .+.++..+++|+.|+.++++++.. ..+..++|
T Consensus 69 ~~~------~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv 142 (260)
T 2ae2_A 69 SRS------ERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVV 142 (260)
T ss_dssp CHH------HHHHHHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 876 666555 579999999997542 245678899999999999999843 12368999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+... .|. ...|+.||+..|.+++.++. ++.+
T Consensus 143 ~isS~~~~~~----------~~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v 184 (260)
T 2ae2_A 143 FISSVSGALA----------VPY----------------------------EAVYGATKGAMDQLTRCLAFEWAKDNIRV 184 (260)
T ss_dssp EECCGGGTSC----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHTGGGTEEE
T ss_pred EEcchhhccC----------CCC----------------------------cchHHHHHHHHHHHHHHHHHHHhhcCcEE
Confidence 9999755321 111 13499999999999877643 7999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
.+++||.|.++.
T Consensus 185 ~~v~Pg~v~t~~ 196 (260)
T 2ae2_A 185 NGVGPGVIATSL 196 (260)
T ss_dssp EEEEECSBCSHH
T ss_pred EEEecCCCCCcc
Confidence 999999998763
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-17 Score=171.87 Aligned_cols=213 Identities=13% Similarity=0.140 Sum_probs=137.2
Q ss_pred hhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 213 ARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 213 ~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
...+++|+||||||+|+||+++++.|++.| .+|++++|... ++.++. + ....++.++.+
T Consensus 9 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G---~~V~~~~r~~~------~~~~~~---------~---~~~~~~~~~~~ 67 (249)
T 3f9i_A 9 MIDLTGKTSLITGASSGIGSAIARLLHKLG---SKVIISGSNEE------KLKSLG---------N---ALKDNYTIEVC 67 (249)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH---------H---HHCSSEEEEEC
T ss_pred cccCCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEcCCHH------HHHHHH---------H---HhccCccEEEc
Confidence 345789999999999999999999999998 78999998532 222111 1 11247889999
Q ss_pred CCCCCcCCCCHHHHHHHhc---CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEe
Q psy11859 293 DILQANLGIKDSDLLMLQE---EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHF 359 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~~---~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~v 359 (851)
|+++++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++... .+..++|++
T Consensus 68 D~~~~~------~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~i 141 (249)
T 3f9i_A 68 NLANKE------ECSNLISKTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINI 141 (249)
T ss_dssp CTTSHH------HHHHHHHTCSCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCHH------HHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 999876 6666665 68999999997542 2456788999999999999888532 235799999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..++... .+. ..|+.||+..|.+++.++. ++.+.+
T Consensus 142 sS~~~~~~~---------~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~ 183 (249)
T 3f9i_A 142 SSIVGIAGN---------PGQ-----------------------------ANYCASKAGLIGMTKSLSYEVATRGITVNA 183 (249)
T ss_dssp CCCCC--CC---------SCS-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred ccHHhccCC---------CCC-----------------------------chhHHHHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 997654221 111 3499999988888766542 899999
Q ss_pred EecccccCCCCCCc-hhHhhhhcCCce-EEEEcccCceeEEEeecC----CCCccEEEEeCC
Q psy11859 435 VRPSIVLPSFQEPV-PGWVDSLNGPVG-VLVASGKGVVRSMILNDL----STETQVFNISSN 490 (851)
Q Consensus 435 vRp~~V~G~~~~p~-p~~i~~~~~~~~-~~~~~g~~v~~~~~~~~~----~~~~~iyni~~~ 490 (851)
++||.|.++....+ +.+...+....+ --++...++++++..... ...|+++++++|
T Consensus 184 v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgG 245 (249)
T 3f9i_A 184 VAPGFIKSDMTDKLNEKQREAIVQKIPLGTYGIPEDVAYAVAFLASNNASYITGQTLHVNGG 245 (249)
T ss_dssp EEECCBC------CCHHHHHHHHHHCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EecCccccCcccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCCccCCccCcEEEECCC
Confidence 99999998765432 222222111000 001122445444332221 235789999887
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.68 E-value=4.4e-16 Score=164.32 Aligned_cols=164 Identities=17% Similarity=0.152 Sum_probs=124.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... .+...++ .. ...++.++.+|++
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G---~~V~~~~r~~~----~~~~~~l---------~~----~~~~~~~~~~D~~ 61 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAG---ANIVLNGFGDP----APALAEI---------AR----HGVKAVHHPADLS 61 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEECSSCC----HHHHHHH---------HT----TSCCEEEECCCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCch----HHHHHHH---------Hh----cCCceEEEeCCCC
Confidence 468999999999999999999999998 68999988754 1111111 11 1236889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHH----HhcCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIA----LKMKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a----~~~~~~~~fV 357 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++.+++ ++. +..++|
T Consensus 62 ~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv 134 (255)
T 2q2v_A 62 DVA------QIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRAR-NWGRII 134 (255)
T ss_dssp SHH------HHHHHHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEE
Confidence 886 6776665 89999999997542 2456788999999888877766 344 368999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..++.. .|. ...|+.||+..+.+.+.++. ++.+
T Consensus 135 ~isS~~~~~~----------~~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v 176 (255)
T 2q2v_A 135 NIASVHGLVG----------STG----------------------------KAAYVAAKHGVVGLTKVVGLETATSNVTC 176 (255)
T ss_dssp EECCGGGTSC----------CTT----------------------------BHHHHHHHHHHHHHHHHHHHHTTTSSEEE
T ss_pred EEcCchhccC----------CCC----------------------------chhHHHHHHHHHHHHHHHHHHhcccCcEE
Confidence 9999765432 111 13499999999998876642 7999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
.++|||.|.++.
T Consensus 177 ~~v~Pg~v~t~~ 188 (255)
T 2q2v_A 177 NAICPGWVLTPL 188 (255)
T ss_dssp EEEEESSBCCHH
T ss_pred EEEeeCCCcCcc
Confidence 999999999875
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.9e-16 Score=162.71 Aligned_cols=172 Identities=20% Similarity=0.226 Sum_probs=123.3
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++|+||||||+|+||++++++|++.|.. .+|++++|..... +.+ .+. ...++.++.+|+++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~-~~V~~~~r~~~~~---~~l------------~~~---~~~~~~~~~~D~~~ 62 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNI-RHIIATARDVEKA---TEL------------KSI---KDSRVHVLPLTVTC 62 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTC-CEEEEEESSGGGC---HHH------------HTC---CCTTEEEEECCTTC
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCC-cEEEEEecCHHHH---HHH------------Hhc---cCCceEEEEeecCC
Confidence 5789999999999999999999998731 4788999975432 111 111 12478999999998
Q ss_pred CcCCCCHHHHHHHhc---------CccEEEEccccCC-c-------chhHHHHHHHHHHHHHHHHHHHHhc---------
Q psy11859 297 ANLGIKDSDLLMLQE---------EVSVVFNGAASLK-L-------EAELKENVAANTRGTQRLLDIALKM--------- 350 (851)
Q Consensus 297 ~~lgls~~~~~~~~~---------~vd~ViH~AA~~~-~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~--------- 350 (851)
++ ++..+++ ++|+|||+||... . .+.+...+++|+.|+.++++++...
T Consensus 63 ~~------~~~~~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~ 136 (250)
T 1yo6_A 63 DK------SLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKES 136 (250)
T ss_dssp HH------HHHHHHHHHHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSC
T ss_pred HH------HHHHHHHHHHHhcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccC
Confidence 76 6666555 8999999999765 1 2456788999999999999988653
Q ss_pred -CC----ceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHH
Q psy11859 351 -KK----LVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDE 425 (851)
Q Consensus 351 -~~----~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~ 425 (851)
+. ..+||++||..+...... +..++.+. ..|+.||+..|.+++.
T Consensus 137 ~~~~~~~~~~iv~isS~~~~~~~~~--~~~~~~~~-----------------------------~~Y~~sK~a~~~~~~~ 185 (250)
T 1yo6_A 137 GDQLSVSRAAVITISSGLGSITDNT--SGSAQFPV-----------------------------LAYRMSKAAINMFGRT 185 (250)
T ss_dssp SSCCCTTTCEEEEECCGGGCSTTCC--STTSSSCB-----------------------------HHHHHHHHHHHHHHHH
T ss_pred CCcccCCCcEEEEeccCccccCCcc--cccccCCc-----------------------------cHHHHHHHHHHHHHHH
Confidence 21 578999999765432210 11111122 3499999999999876
Q ss_pred HhC-----CCCEEEEecccccCCC
Q psy11859 426 YKT-----KLPVVIVRPSIVLPSF 444 (851)
Q Consensus 426 ~~~-----~l~~~ivRp~~V~G~~ 444 (851)
++. ++.+.++|||.|.++.
T Consensus 186 la~e~~~~gi~v~~v~Pg~v~t~~ 209 (250)
T 1yo6_A 186 LAVDLKDDNVLVVNFCPGWVQTNL 209 (250)
T ss_dssp HHHHTGGGTCEEEEEECCCC----
T ss_pred HHHHhccCCeEEEEEcCCceecCC
Confidence 643 7999999999997764
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-16 Score=167.87 Aligned_cols=177 Identities=18% Similarity=0.151 Sum_probs=129.4
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCC-------CHHHHHHHHhcChhhHHHhhhCcccCCCe
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGL-------TPKARLAEFSKLPVFERLRKECPAQLSRL 287 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~-------~~~~rl~~~~~~~~f~~l~~~~~~~~~~v 287 (851)
-++||+||||||+|+||++++++|++.| .+|++++|..... ...++++++. ++......++
T Consensus 12 ~l~gk~~lVTGas~gIG~a~a~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 79 (280)
T 3pgx_A 12 SLQGRVAFITGAARGQGRSHAVRLAAEG---ADIIACDICAPVSASVTYAPASPEDLDETA---------RLVEDQGRKA 79 (280)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEECCSCCCTTCCSCCCCHHHHHHHH---------HHHHTTTCCE
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeccccccccccccccCHHHHHHHH---------HHHHhcCCeE
Confidence 3689999999999999999999999998 7899998853211 0122332211 1111223578
Q ss_pred EEEEcCCCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---
Q psy11859 288 HIIEGDILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM--- 350 (851)
Q Consensus 288 ~~v~gDi~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~--- 350 (851)
.++.+|++|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++...
T Consensus 80 ~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~ 153 (280)
T 3pgx_A 80 LTRVLDVRDDA------ALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIE 153 (280)
T ss_dssp EEEECCTTCHH------HHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 99999999886 6665554 79999999997653 2456788999999999999998542
Q ss_pred -CCceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-
Q psy11859 351 -KKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT- 428 (851)
Q Consensus 351 -~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~- 428 (851)
+.-.++|++||..+... .|. ...|+.||+..+.+.+.++.
T Consensus 154 ~~~~g~iv~isS~~~~~~----------~~~----------------------------~~~Y~asKaa~~~~~~~la~e 195 (280)
T 3pgx_A 154 AGNGGSIVVVSSSAGLKA----------TPG----------------------------NGHYSASKHGLTALTNTLAIE 195 (280)
T ss_dssp HCSCEEEEEECCGGGTSC----------CTT----------------------------BHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcchhhccC----------CCC----------------------------chhHHHHHHHHHHHHHHHHHH
Confidence 22468999999655321 111 13499999999988876543
Q ss_pred ----CCCEEEEecccccCCCCCC
Q psy11859 429 ----KLPVVIVRPSIVLPSFQEP 447 (851)
Q Consensus 429 ----~l~~~ivRp~~V~G~~~~p 447 (851)
++++.+++||.|.++...+
T Consensus 196 ~~~~gi~vn~v~PG~v~t~~~~~ 218 (280)
T 3pgx_A 196 LGEYGIRVNSIHPYSVETPMIEP 218 (280)
T ss_dssp HGGGTEEEEEEEECSBCSTTCCH
T ss_pred hhhcCeEEEEEeeCcccCcccch
Confidence 8999999999999987543
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-16 Score=167.61 Aligned_cols=213 Identities=11% Similarity=0.139 Sum_probs=142.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|.... .+.+. +.++ ....++.++.+|++
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G---~~v~~~~r~~~~---~~~~~--------~~~~----~~~~~~~~~~~D~~ 64 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKG---ATVVGTATSQAS---AEKFE--------NSMK----EKGFKARGLVLNIS 64 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESSHHH---HHHHH--------HHHH----HTTCCEEEEECCTT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHH--------HHHH----hcCCceEEEEecCC
Confidence 468999999999999999999999998 689999986432 11111 1111 12347899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|+
T Consensus 65 ~~~------~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~ 138 (247)
T 3lyl_A 65 DIE------SIQNFFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIIS 138 (247)
T ss_dssp CHH------HHHHHHHHHHHTTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 886 6655543 58999999997643 2456788999999999999987542 13468999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ 433 (851)
+||..+... ..+. ..|+.||+..|.+++.++ . ++++.
T Consensus 139 isS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~ 180 (247)
T 3lyl_A 139 IGSVVGSAG---------NPGQ-----------------------------TNYCAAKAGVIGFSKSLAYEVASRNITVN 180 (247)
T ss_dssp ECCTHHHHC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred EcchhhccC---------CCCc-----------------------------HHHHHHHHHHHHHHHHHHHHHHHcCeEEE
Confidence 999654321 1111 349999998777776553 2 89999
Q ss_pred EEecccccCCCCCCchh-HhhhhcCCceE-EEEcccCceeEEEeec--C--CCCccEEEEeCC
Q psy11859 434 IVRPSIVLPSFQEPVPG-WVDSLNGPVGV-LVASGKGVVRSMILND--L--STETQVFNISSN 490 (851)
Q Consensus 434 ivRp~~V~G~~~~p~p~-~i~~~~~~~~~-~~~~g~~v~~~~~~~~--~--~~~~~iyni~~~ 490 (851)
+++||.|..+....++. ....+....+. -++...++++++.... . ...|+++++++|
T Consensus 181 ~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG 243 (247)
T 3lyl_A 181 VVAPGFIATDMTDKLTDEQKSFIATKIPSGQIGEPKDIAAAVAFLASEEAKYITGQTLHVNGG 243 (247)
T ss_dssp EEEECSBCCTTTTTSCHHHHHHHHTTSTTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EEeeCcEecccchhccHHHHHHHhhcCCCCCCcCHHHHHHHHHHHhCCCcCCccCCEEEECCC
Confidence 99999999886554322 22222111110 1122344444433221 1 235788999887
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.3e-16 Score=164.76 Aligned_cols=210 Identities=19% Similarity=0.136 Sum_probs=144.7
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
-++||+||||||+|+||++++++|++.| .+|++++|..... .+...++ ..++.++.+|+
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~--~~~~~~~----------------~~~~~~~~~Dv 66 (271)
T 3tzq_B 8 ELENKVAIITGACGGIGLETSRVLARAG---ARVVLADLPETDL--AGAAASV----------------GRGAVHHVVDL 66 (271)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECTTSCH--HHHHHHH----------------CTTCEEEECCT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEcCCHHHH--HHHHHHh----------------CCCeEEEECCC
Confidence 3678999999999999999999999998 6899999976541 1111111 23688999999
Q ss_pred CCCcCCCCHHHHHHHhc-------CccEEEEccccCCc---------chhHHHHHHHHHHHHHHHHHHH----HhcCCce
Q psy11859 295 LQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL---------EAELKENVAANTRGTQRLLDIA----LKMKKLV 354 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~---------~~~~~~~~~~Nv~Gt~~ll~~a----~~~~~~~ 354 (851)
+|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++ ++.+ ..
T Consensus 67 ~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g 139 (271)
T 3tzq_B 67 TNEV------SVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAG-GG 139 (271)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CC
Confidence 9886 6666655 79999999997632 2456788999999999999998 4443 67
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~ 429 (851)
++|++||..+... ..+. ..|+.||+..|.+++.++. +
T Consensus 140 ~iv~isS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~l~~~la~e~~~~g 181 (271)
T 3tzq_B 140 AIVNISSATAHAA---------YDMS-----------------------------TAYACTKAAIETLTRYVATQYGRHG 181 (271)
T ss_dssp EEEEECCGGGTSB---------CSSC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred EEEEECCHHHcCC---------CCCC-----------------------------hHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999755321 1111 3499999999998876543 8
Q ss_pred CCEEEEecccccCCCCC-Cc-hhHhhhhcCCceE-EEEcccCceeEEEeec--C--CCCccEEEEeCC
Q psy11859 430 LPVVIVRPSIVLPSFQE-PV-PGWVDSLNGPVGV-LVASGKGVVRSMILND--L--STETQVFNISSN 490 (851)
Q Consensus 430 l~~~ivRp~~V~G~~~~-p~-p~~i~~~~~~~~~-~~~~g~~v~~~~~~~~--~--~~~~~iyni~~~ 490 (851)
+.+.+++||.|.++... .. +.+.+.+....+. -++...++++.+.... . ...|+++++++|
T Consensus 182 i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 249 (271)
T 3tzq_B 182 VRCNAIAPGLVRTPRLEVGLPQPIVDIFATHHLAGRIGEPHEIAELVCFLASDRAAFITGQVIAADSG 249 (271)
T ss_dssp EEEEEEEECCBCCTTTC---CHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EEEEEEEeCCCcCccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCcccCCcCCCEEEECCC
Confidence 99999999999998654 21 2222222221110 0122234444432211 1 235788888877
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=8.1e-18 Score=184.37 Aligned_cols=186 Identities=13% Similarity=0.085 Sum_probs=123.5
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCC----CccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCP----DIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~----~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
.|+|+||||+||||++|+..|+..+. .+.+|.++++... ..+.... . ..|.. ..+.++ +|
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~----~~~~~g~----~-~dl~~------~~~~~~-~d 67 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQA----MKALEGV----V-MELED------CAFPLL-AG 67 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGG----HHHHHHH----H-HHHHT------TTCTTE-EE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCc----hhhccch----h-hhhhc------cccccc-CC
Confidence 46899999999999999999998762 1238899887531 1111100 0 00100 011123 68
Q ss_pred CCCCcCCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCce-EEEEeeeeeeeCCCccc
Q psy11859 294 ILQANLGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLV-AFIHFSTAFCHPDQKVL 371 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~-~fV~vSTa~~~~~~~~i 371 (851)
+++.. ++...++++|+|||+||..+. ..+..+.+++|+.||+++++++++.++++ +|+++|+... . ..++
T Consensus 68 i~~~~------~~~~a~~~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~-~-~~~~ 139 (327)
T 1y7t_A 68 LEATD------DPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPAN-T-NALI 139 (327)
T ss_dssp EEEES------CHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH-H-HHHH
T ss_pred eEecc------ChHHHhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchh-h-hHHH
Confidence 87655 566778899999999998764 34567899999999999999999874233 6777665210 0 0011
Q ss_pred ccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC-c
Q psy11859 372 EEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP-V 448 (851)
Q Consensus 372 ~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p-~ 448 (851)
.++.. .+..| .+.|+.||..+|+++..+++ +++++++||++|||+++.. +
T Consensus 140 ~~~~~-~~~~p--------------------------~~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~~~~ 192 (327)
T 1y7t_A 140 AYKNA-PGLNP--------------------------RNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMF 192 (327)
T ss_dssp HHHTC-TTSCG--------------------------GGEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCE
T ss_pred HHHHc-CCCCh--------------------------hheeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCCCeEE
Confidence 11111 01111 24599999999999988766 9999999999999998643 5
Q ss_pred hhHhhh
Q psy11859 449 PGWVDS 454 (851)
Q Consensus 449 p~~i~~ 454 (851)
|.|...
T Consensus 193 ~~~~~~ 198 (327)
T 1y7t_A 193 PDLFHA 198 (327)
T ss_dssp EECSSC
T ss_pred EEeeee
Confidence 555544
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.3e-17 Score=171.23 Aligned_cols=170 Identities=18% Similarity=0.191 Sum_probs=119.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
.++|+||||||+|+||++++++|++.| .+|+++.+.... ..+.+.+ .+. ....++.++.+|++
T Consensus 24 ~~~k~vlITGas~gIG~a~a~~l~~~G---~~V~~~~~~~~~--~~~~~~~--------~~~----~~~~~~~~~~~Dl~ 86 (272)
T 4e3z_A 24 SDTPVVLVTGGSRGIGAAVCRLAARQG---WRVGVNYAANRE--AADAVVA--------AIT----ESGGEAVAIPGDVG 86 (272)
T ss_dssp CCSCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHHH--------HHH----HTTCEEEEEECCTT
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCCChh--HHHHHHH--------HHH----hcCCcEEEEEcCCC
Confidence 457899999999999999999999998 677666433211 1111111 111 12347899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhc------CCce
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKM------KKLV 354 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~------~~~~ 354 (851)
|++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++... ++..
T Consensus 87 ~~~------~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g 160 (272)
T 4e3z_A 87 NAA------DIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGG 160 (272)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCE
T ss_pred CHH------HHHHHHHHHHHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCC
Confidence 876 6665544 78999999997643 2456788999999999999988653 1246
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~ 429 (851)
++|++||..+.... +.+. ..|+.||+..|.+++.++. +
T Consensus 161 ~iv~isS~~~~~~~--------~~~~-----------------------------~~Y~asKaa~~~~~~~la~e~~~~g 203 (272)
T 4e3z_A 161 AIVNVSSMAAILGS--------ATQY-----------------------------VDYAASKAAIDTFTIGLAREVAAEG 203 (272)
T ss_dssp EEEEECCTHHHHCC--------TTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred EEEEEcchHhccCC--------CCCc-----------------------------chhHHHHHHHHHHHHHHHHHHHHcC
Confidence 89999996543210 0011 2499999999998876543 8
Q ss_pred CCEEEEecccccCCCC
Q psy11859 430 LPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 430 l~~~ivRp~~V~G~~~ 445 (851)
+++.+++||.|.++..
T Consensus 204 i~v~~v~PG~v~t~~~ 219 (272)
T 4e3z_A 204 IRVNAVRPGIIETDLH 219 (272)
T ss_dssp EEEEEEEECSBC----
T ss_pred cEEEEEecCCCcCCcc
Confidence 9999999999998754
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.4e-16 Score=165.99 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=123.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.++ .++ ...++.++.+|++
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~------~~~~~---------~~~---~~~~~~~~~~D~~ 68 (263)
T 3ak4_A 10 LSGRKAIVTGGSKGIGAAIARALDKAG---ATVAIADLDVM------AAQAV---------VAG---LENGGFAVEVDVT 68 (263)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH---------HHT---CTTCCEEEECCTT
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH---------HHH---HhcCCeEEEEeCC
Confidence 578999999999999999999999998 68999988642 12111 111 1126788999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc----CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM----KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~~~~~fV 357 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... +...++|
T Consensus 69 d~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv 142 (263)
T 3ak4_A 69 KRA------SVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIV 142 (263)
T ss_dssp CHH------HHHHHHHHHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 876 6666655 79999999997542 1356788999999999999988653 1147899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+... .|. ...|+.||+..|.+++.++. ++++
T Consensus 143 ~isS~~~~~~----------~~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v 184 (263)
T 3ak4_A 143 NTASLAAKVG----------APL----------------------------LAHYSASKFAVFGWTQALAREMAPKNIRV 184 (263)
T ss_dssp EECCGGGTSC----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEE
T ss_pred EecccccccC----------CCC----------------------------chhHHHHHHHHHHHHHHHHHHHhHcCeEE
Confidence 9999654321 111 13499999999988876542 8999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
.++|||.|.++.
T Consensus 185 ~~v~Pg~v~t~~ 196 (263)
T 3ak4_A 185 NCVCPGFVKTAM 196 (263)
T ss_dssp EEEEECSBTTHH
T ss_pred EEEecccccChh
Confidence 999999999874
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-16 Score=170.11 Aligned_cols=177 Identities=19% Similarity=0.248 Sum_probs=130.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||++++++|++.| .+|++++|... +..+.. + ....++.++.+|++
T Consensus 14 l~gk~vlVTGas~gIG~~~a~~L~~~G---~~V~~~~r~~~------~~~~~~---------~---~~~~~~~~~~~Dl~ 72 (291)
T 3rd5_A 14 FAQRTVVITGANSGLGAVTARELARRG---ATVIMAVRDTR------KGEAAA---------R---TMAGQVEVRELDLQ 72 (291)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH---------T---TSSSEEEEEECCTT
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEECCHH------HHHHHH---------H---HhcCCeeEEEcCCC
Confidence 578999999999999999999999998 78999998642 222111 1 11347899999999
Q ss_pred CCcCCCCHHHHHHHhc---CccEEEEccccCCc-----chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCC
Q psy11859 296 QANLGIKDSDLLMLQE---EVSVVFNGAASLKL-----EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPD 367 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~---~vd~ViH~AA~~~~-----~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~ 367 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++.... .+++|++||..++..
T Consensus 73 d~~------~v~~~~~~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~-~~riv~isS~~~~~~ 145 (291)
T 3rd5_A 73 DLS------SVRRFADGVSGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRL-TDRVVTVSSMAHWPG 145 (291)
T ss_dssp CHH------HHHHHHHTCCCEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGE-EEEEEEECCGGGTTC
T ss_pred CHH------HHHHHHHhcCCCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhheeEeechhhccC
Confidence 886 7777766 67999999997542 24566889999999999999998764 679999999766543
Q ss_pred Cccccccc-CCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C--CCEEEEeccc
Q psy11859 368 QKVLEEKL-YPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K--LPVVIVRPSI 439 (851)
Q Consensus 368 ~~~i~E~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~--l~~~ivRp~~ 439 (851)
....++.. ...+..+ ...|+.||+..+.+++.++. + +.+..++||.
T Consensus 146 ~~~~~~~~~~~~~~~~--------------------------~~~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~ 199 (291)
T 3rd5_A 146 RINLEDLNWRSRRYSP--------------------------WLAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGY 199 (291)
T ss_dssp CCCSSCTTCSSSCCCH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSG
T ss_pred CCCcccccccccCCCC--------------------------cchHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCC
Confidence 22111100 0112222 14599999999998876643 4 9999999999
Q ss_pred ccCCCCC
Q psy11859 440 VLPSFQE 446 (851)
Q Consensus 440 V~G~~~~ 446 (851)
|..+...
T Consensus 200 v~T~~~~ 206 (291)
T 3rd5_A 200 SHTNLQG 206 (291)
T ss_dssp GGSCC--
T ss_pred Ccccccc
Confidence 9876543
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.2e-16 Score=161.79 Aligned_cols=157 Identities=17% Similarity=0.206 Sum_probs=119.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|..... . ..+.++.+|++
T Consensus 5 l~~k~vlVTGas~giG~~ia~~l~~~G---~~V~~~~r~~~~~-----------------------~--~~~~~~~~D~~ 56 (250)
T 2fwm_X 5 FSGKNVWVTGAGKGIGYATALAFVEAG---AKVTGFDQAFTQE-----------------------Q--YPFATEVMDVA 56 (250)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCCCSS-----------------------C--CSSEEEECCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCchhhh-----------------------c--CCceEEEcCCC
Confidence 468999999999999999999999998 7899999875310 0 12778999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHH----hcCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIAL----KMKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV 357 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++. +.+ ..++|
T Consensus 57 d~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv 129 (250)
T 2fwm_X 57 DAA------QVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQR-GGAIV 129 (250)
T ss_dssp CHH------HHHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcC-CCEEE
Confidence 876 6666654 79999999997542 24577889999999999999883 333 67999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+... ..+. ..|+.||+..|.+++.++. ++++
T Consensus 130 ~isS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v 171 (250)
T 2fwm_X 130 TVASDAAHTP---------RIGM-----------------------------SAYGASKAALKSLALSVGLELAGSGVRC 171 (250)
T ss_dssp EECCGGGTSC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTCEE
T ss_pred EECchhhCCC---------CCCC-----------------------------chHHHHHHHHHHHHHHHHHHhCccCCEE
Confidence 9999755321 1111 3499999999998876642 8999
Q ss_pred EEEecccccCCCC
Q psy11859 433 VIVRPSIVLPSFQ 445 (851)
Q Consensus 433 ~ivRp~~V~G~~~ 445 (851)
.++|||.|.++..
T Consensus 172 ~~v~Pg~v~t~~~ 184 (250)
T 2fwm_X 172 NVVSPGSTDTDMQ 184 (250)
T ss_dssp EEEEECCC-----
T ss_pred EEEECCcccCccc
Confidence 9999999998753
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.9e-16 Score=163.96 Aligned_cols=167 Identities=19% Similarity=0.221 Sum_probs=122.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.++ .+.+. . ..++.++.+|++
T Consensus 4 ~~~k~vlVtGasggiG~~~a~~l~~~G---~~V~~~~r~~~------~~~~~-----~~~~~----~-~~~~~~~~~D~~ 64 (251)
T 1zk4_A 4 LDGKVAIITGGTLGIGLAIATKFVEEG---AKVMITGRHSD------VGEKA-----AKSVG----T-PDQIQFFQHDSS 64 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHC----C-TTTEEEEECCTT
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH-----HHHhh----c-cCceEEEECCCC
Confidence 578999999999999999999999998 68999998642 11111 01111 1 147899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCc-eEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKL-VAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~-~~fV 357 (851)
+++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++.+++... .+. .+||
T Consensus 65 ~~~------~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv 138 (251)
T 1zk4_A 65 DED------GWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASII 138 (251)
T ss_dssp CHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEE
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 876 6665554 59999999997532 2356788999999988877766431 135 7999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh------C-CC
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK------T-KL 430 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~------~-~l 430 (851)
++||..++... .+. ..|+.||+..|.+++.++ . ++
T Consensus 139 ~isS~~~~~~~---------~~~-----------------------------~~Y~~sK~a~~~~~~~~a~e~~~~~~~i 180 (251)
T 1zk4_A 139 NMSSIEGFVGD---------PSL-----------------------------GAYNASKGAVRIMSKSAALDCALKDYDV 180 (251)
T ss_dssp EECCGGGTSCC---------TTC-----------------------------HHHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred EeCCchhccCC---------CCC-----------------------------ccchHHHHHHHHHHHHHHHHhcccCCCe
Confidence 99997654321 111 349999999999886543 3 89
Q ss_pred CEEEEecccccCCCC
Q psy11859 431 PVVIVRPSIVLPSFQ 445 (851)
Q Consensus 431 ~~~ivRp~~V~G~~~ 445 (851)
++.++|||.|+++..
T Consensus 181 ~v~~v~Pg~v~t~~~ 195 (251)
T 1zk4_A 181 RVNTVHPGYIKTPLV 195 (251)
T ss_dssp EEEEEEECCBCCHHH
T ss_pred EEEEEeeCcCcchhh
Confidence 999999999998753
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.66 E-value=6e-16 Score=163.48 Aligned_cols=166 Identities=16% Similarity=0.129 Sum_probs=122.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||+++++.|++.| .+|++++|........ .. +...++.++.+|++
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~--~~----------------~~~~~~~~~~~Dv~ 63 (257)
T 3tpc_A 5 LKSRVFIVTGASSGLGAAVTRMLAQEG---ATVLGLDLKPPAGEEP--AA----------------ELGAAVRFRNADVT 63 (257)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESSCC------------------------------CEEEECCTT
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCChHHHHHH--HH----------------HhCCceEEEEccCC
Confidence 578999999999999999999999998 6899999976542110 00 01236889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-----------chhHHHHHHHHHHHHHHHHHHHHhc-------
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-----------EAELKENVAANTRGTQRLLDIALKM------- 350 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-----------~~~~~~~~~~Nv~Gt~~ll~~a~~~------- 350 (851)
|++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++...
T Consensus 64 ~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~ 137 (257)
T 3tpc_A 64 NEA------DATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPD 137 (257)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCC
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc
Confidence 886 6666654 89999999997632 2457788999999999999999753
Q ss_pred --CCceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh-
Q psy11859 351 --KKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK- 427 (851)
Q Consensus 351 --~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~- 427 (851)
++..++|++||..+... ..+. ..|+.||+..+.+.+.++
T Consensus 138 ~~~~~g~iv~isS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~~~~~la~ 179 (257)
T 3tpc_A 138 ADGERGVIVNTASIAAFDG---------QIGQ-----------------------------AAYAASKGGVAALTLPAAR 179 (257)
T ss_dssp TTSCCEEEEEECCTHHHHC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEechhhccC---------CCCC-----------------------------cchHHHHHHHHHHHHHHHH
Confidence 13467999999655321 1111 349999999998876554
Q ss_pred ---C-CCCEEEEecccccCCCCC
Q psy11859 428 ---T-KLPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 428 ---~-~l~~~ivRp~~V~G~~~~ 446 (851)
. ++++.+++||.|.++...
T Consensus 180 e~~~~gi~vn~v~PG~v~t~~~~ 202 (257)
T 3tpc_A 180 ELARFGIRVVTIAPGIFDTPMMA 202 (257)
T ss_dssp HHGGGTEEEEEEEECCBSCC---
T ss_pred HHHHcCeEEEEEEeCCCCChhhc
Confidence 2 899999999999987543
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.7e-16 Score=164.55 Aligned_cols=213 Identities=12% Similarity=0.109 Sum_probs=143.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.+. .+.+.. ...++.++.+|++
T Consensus 12 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~------~~~~~-----~~~l~~----~~~~~~~~~~D~~ 73 (260)
T 2zat_A 12 LENKVALVTASTDGIGLAIARRLAQDG---AHVVVSSRKQE------NVDRT-----VATLQG----EGLSVTGTVCHVG 73 (260)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHHH----TTCCEEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH-----HHHHHh----cCCceEEEEccCC
Confidence 578999999999999999999999998 68999998642 12111 111211 1236889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKM---KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV 357 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 74 ~~~------~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv 147 (260)
T 2zat_A 74 KAE------DRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVL 147 (260)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEE
Confidence 876 6555554 79999999996431 2356788999999999999887531 2368999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..++.. ..+. ..|+.||+..|.+++.++. ++++
T Consensus 148 ~isS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v 189 (260)
T 2zat_A 148 IVSSVGAYHP---------FPNL-----------------------------GPYNVSKTALLGLTKNLAVELAPRNIRV 189 (260)
T ss_dssp EECCGGGTSC---------CTTB-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEechhhcCC---------CCCc-----------------------------hhHHHHHHHHHHHHHHHHHHhcccCeEE
Confidence 9999765432 1111 3499999999998877642 8999
Q ss_pred EEEecccccCCCCCCc---hhHhhhhcCCce-EEEEcccCceeEEEeecC----CCCccEEEEeCC
Q psy11859 433 VIVRPSIVLPSFQEPV---PGWVDSLNGPVG-VLVASGKGVVRSMILNDL----STETQVFNISSN 490 (851)
Q Consensus 433 ~ivRp~~V~G~~~~p~---p~~i~~~~~~~~-~~~~~g~~v~~~~~~~~~----~~~~~iyni~~~ 490 (851)
.+++||.|.++..... +.....+....+ .-++..+++++++..... ...|+++++++|
T Consensus 190 ~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG 255 (260)
T 2zat_A 190 NCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSEDASYITGETVVVGGG 255 (260)
T ss_dssp EEEEECSBCSSTTHHHHSSHHHHHHHHHHHTCSSCBCGGGGHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred EEEEECcccCccchhcccChHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCcccCCccCCEEEECCC
Confidence 9999999988753210 111111100000 012334566655443222 136789999988
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.8e-16 Score=168.73 Aligned_cols=172 Identities=17% Similarity=0.218 Sum_probs=123.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||+++++.|++.| .+|++.+|...+... +++.++. +.......++.++.+|++
T Consensus 3 m~~k~vlVTGas~GIG~aia~~L~~~G---~~V~~~~r~~~~r~~-~~~~~l~---------~~~~~~~~~~~~~~~Dvt 69 (324)
T 3u9l_A 3 MSKKIILITGASSGFGRLTAEALAGAG---HRVYASMRDIVGRNA-SNVEAIA---------GFARDNDVDLRTLELDVQ 69 (324)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESCTTTTTH-HHHHHHH---------HHHHHHTCCEEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEecCcccccCH-HHHHHHH---------HHHHhcCCcEEEEEeecC
Confidence 357899999999999999999999998 789999987544322 2222211 111112347899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHH----HhcCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIA----LKMKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a----~~~~~~~~fV 357 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++ ++. +..++|
T Consensus 70 d~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~-~~g~iV 142 (324)
T 3u9l_A 70 SQV------SVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQ-KHGLLI 142 (324)
T ss_dssp CHH------HHHHHHHHHHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEE
Confidence 886 6666655 89999999996532 2456678999999999999998 444 368999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+.... .|. ...|+.||+..|.+++.++. ++.+
T Consensus 143 ~isS~~~~~~~---------~~~----------------------------~~~Y~asKaa~~~~~~~la~el~~~gI~v 185 (324)
T 3u9l_A 143 WISSSSSAGGT---------PPY----------------------------LAPYFAAKAAMDAIAVQYARELSRWGIET 185 (324)
T ss_dssp EECCGGGTSCC---------CSS----------------------------CHHHHHHHHHHHHHHHHHHHHHHTTTEEE
T ss_pred EEecchhccCC---------CCc----------------------------chhHHHHHHHHHHHHHHHHHHhhhhCcEE
Confidence 99997554211 111 13499999999998877643 8999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
.+|+||.|.++.
T Consensus 186 ~~v~PG~v~t~~ 197 (324)
T 3u9l_A 186 SIIVPGAFTSGT 197 (324)
T ss_dssp EEEEECCC----
T ss_pred EEEECCccccCc
Confidence 999999997653
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-16 Score=166.50 Aligned_cols=207 Identities=12% Similarity=0.161 Sum_probs=134.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||+++++.|++.| .+|++++|.... ..+.+. +. ++.++.+|++
T Consensus 25 l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~--~~~~~~------------~~------~~~~~~~Dv~ 81 (260)
T 3gem_A 25 LSSAPILITGASQRVGLHCALRLLEHG---HRVIISYRTEHA--SVTELR------------QA------GAVALYGDFS 81 (260)
T ss_dssp --CCCEEESSTTSHHHHHHHHHHHHTT---CCEEEEESSCCH--HHHHHH------------HH------TCEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCChHH--HHHHHH------------hc------CCeEEECCCC
Confidence 578999999999999999999999998 678999997642 111111 11 4788999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEe
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHF 359 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~v 359 (851)
+++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|++
T Consensus 82 ~~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~i 155 (260)
T 3gem_A 82 CET------GIMAFIDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHI 155 (260)
T ss_dssp SHH------HHHHHHHHHHHHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 886 6655543 68999999996542 1345678999999999999988642 235789999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----CCCEEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----KLPVVIV 435 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----~l~~~iv 435 (851)
||..+... ..+. ..|+.||+..|.+++.++. ++.+.++
T Consensus 156 sS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~l~~~la~e~~~~Irvn~v 197 (260)
T 3gem_A 156 SDDVTRKG---------SSKH-----------------------------IAYCATKAGLESLTLSFAARFAPLVKVNGI 197 (260)
T ss_dssp CCGGGGTC---------CSSC-----------------------------HHHHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CChhhcCC---------CCCc-----------------------------HhHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 99655321 1111 3499999999988876643 6999999
Q ss_pred ecccccCCCCCCchhHhhhhcCCceE-EEEcccCceeEEEee--cCCCCccEEEEeCC
Q psy11859 436 RPSIVLPSFQEPVPGWVDSLNGPVGV-LVASGKGVVRSMILN--DLSTETQVFNISSN 490 (851)
Q Consensus 436 Rp~~V~G~~~~p~p~~i~~~~~~~~~-~~~~g~~v~~~~~~~--~~~~~~~iyni~~~ 490 (851)
+||.|..+.... +.+...+....+. .++...++++++... .....|+++++++|
T Consensus 198 ~PG~v~t~~~~~-~~~~~~~~~~~p~~r~~~~edva~~v~~L~~~~~itG~~i~vdGG 254 (260)
T 3gem_A 198 APALLMFQPKDD-AAYRANALAKSALGIEPGAEVIYQSLRYLLDSTYVTGTTLTVNGG 254 (260)
T ss_dssp EECTTCC----------------CCSCCCCCTHHHHHHHHHHHHCSSCCSCEEEESTT
T ss_pred eecccccCCCCC-HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhhCCCCCCCEEEECCC
Confidence 999998764321 2222222111111 112233444433221 22346788998887
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5e-16 Score=164.50 Aligned_cols=212 Identities=12% Similarity=0.074 Sum_probs=142.7
Q ss_pred cCCCEEEEecCc--cHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 216 YAGRSVLVTGGT--GFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 216 ~~~k~VlVTGat--GFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
+++|+||||||+ |+||++++++|++.| .+|++++|... ..+.+.++ .++. ..+.++.+|
T Consensus 6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G---~~V~~~~r~~~---~~~~~~~l---------~~~~----~~~~~~~~D 66 (261)
T 2wyu_A 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAG---AEVALSYQAER---LRPEAEKL---------AEAL----GGALLFRAD 66 (261)
T ss_dssp CTTCEEEEESCCSSSSHHHHHHHHHHHHT---CEEEEEESCGG---GHHHHHHH---------HHHT----TCCEEEECC
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCC---CEEEEEcCCHH---HHHHHHHH---------HHhc----CCcEEEECC
Confidence 578999999999 999999999999998 68999998753 22222221 1111 247889999
Q ss_pred CCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-----------chhHHHHHHHHHHHHHHHHHHHHhcC-Cce
Q psy11859 294 ILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-----------EAELKENVAANTRGTQRLLDIALKMK-KLV 354 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-----------~~~~~~~~~~Nv~Gt~~ll~~a~~~~-~~~ 354 (851)
++|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++...- .-.
T Consensus 67 ~~~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g 140 (261)
T 2wyu_A 67 VTQDE------ELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGG 140 (261)
T ss_dssp TTCHH------HHHHHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCC
Confidence 99876 6665554 78999999997542 24567889999999999999997641 124
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~ 429 (851)
++|++||..+... ..+. ..|+.||+..|.+++.++. +
T Consensus 141 ~iv~isS~~~~~~---------~~~~-----------------------------~~Y~asK~a~~~~~~~la~e~~~~g 182 (261)
T 2wyu_A 141 GIVTLTYYASEKV---------VPKY-----------------------------NVMAIAKAALEASVRYLAYELGPKG 182 (261)
T ss_dssp EEEEEECGGGTSB---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred EEEEEecccccCC---------CCCc-----------------------------hHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 8999999654321 1111 3499999999998876542 8
Q ss_pred CCEEEEecccccCCCCCCc---hhHhhhhcCCceE-EEEcccCceeEEEeecC----CCCccEEEEeCC
Q psy11859 430 LPVVIVRPSIVLPSFQEPV---PGWVDSLNGPVGV-LVASGKGVVRSMILNDL----STETQVFNISSN 490 (851)
Q Consensus 430 l~~~ivRp~~V~G~~~~p~---p~~i~~~~~~~~~-~~~~g~~v~~~~~~~~~----~~~~~iyni~~~ 490 (851)
+.+.+++||.|.++..... +.+.+.+....+. .++...++++.+..... ...|++|++++|
T Consensus 183 i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG 251 (261)
T 2wyu_A 183 VRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAG 251 (261)
T ss_dssp CEEEEEEECCCCCTGGGGCTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cEEEEEeeCCCcCchhhhccccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcChhhcCCCCCEEEECCC
Confidence 9999999999999864332 2232222111110 01223444444332211 235778888887
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-16 Score=165.17 Aligned_cols=165 Identities=16% Similarity=0.193 Sum_probs=116.7
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEE-ecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEE-EEcCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYIL-CRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHI-IEGDIL 295 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l-~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~-v~gDi~ 295 (851)
+|+||||||+|+||++++++|++.| .+|+++ .|... ++.++ .+.+.. ...++.. +.+|++
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G---~~v~~~~~r~~~------~~~~~-----~~~~~~----~~~~~~~~~~~D~~ 62 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDG---FALAIHYGQNRE------KAEEV-----AEEARR----RGSPLVAVLGANLL 62 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTT---CEEEEEESSCHH------HHHHH-----HHHHHH----TTCSCEEEEECCTT
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEcCCCHH------HHHHH-----HHHHHh----cCCceEEEEeccCC
Confidence 4789999999999999999999998 678887 66532 11111 111111 1235666 899999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHH----HhcCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIA----LKMKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a----~~~~~~~~fV 357 (851)
+++ ++..++ .++|+|||+||.... .+.+...+++|+.|+.++++++ ++.+ ..+||
T Consensus 63 ~~~------~~~~~~~~~~~~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv 135 (245)
T 2ph3_A 63 EAE------AATALVHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR-FGRIV 135 (245)
T ss_dssp SHH------HHHHHHHHHHHHHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEE
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcC-CCEEE
Confidence 876 555553 379999999997542 2356788999999966555544 4443 78999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+.... .+. ..|+.||+..|.+++.++. ++++
T Consensus 136 ~~sS~~~~~~~---------~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v 177 (245)
T 2ph3_A 136 NITSVVGILGN---------PGQ-----------------------------ANYVASKAGLIGFTRAVAKEYAQRGITV 177 (245)
T ss_dssp EECCTHHHHCC---------SSB-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEeChhhccCC---------CCC-----------------------------cchHHHHHHHHHHHHHHHHHHHHcCeEE
Confidence 99996442210 111 3499999998888776532 8999
Q ss_pred EEEecccccCCCC
Q psy11859 433 VIVRPSIVLPSFQ 445 (851)
Q Consensus 433 ~ivRp~~V~G~~~ 445 (851)
+++|||.|.++..
T Consensus 178 ~~v~Pg~v~t~~~ 190 (245)
T 2ph3_A 178 NAVAPGFIETEMT 190 (245)
T ss_dssp EEEEECSBCCHHH
T ss_pred EEEEEEeecCcch
Confidence 9999999998753
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.8e-16 Score=160.97 Aligned_cols=160 Identities=20% Similarity=0.156 Sum_probs=114.0
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++|+||||||+|+||++++++|++.| .+|++++|... ++.++ .++ ..++.++.+|++|
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G---~~V~~~~r~~~------~~~~~---------~~~----~~~~~~~~~D~~~ 61 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKG---YRVGLMARDEK------RLQAL---------AAE----LEGALPLPGDVRE 61 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH---------HHH----STTCEEEECCTTC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHH---------HHH----hhhceEEEecCCC
Confidence 46889999999999999999999998 68999998632 22211 111 1268899999998
Q ss_pred CcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHH----HhcCCceEEEE
Q psy11859 297 ANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIA----LKMKKLVAFIH 358 (851)
Q Consensus 297 ~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a----~~~~~~~~fV~ 358 (851)
++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++.+ ++. +..++|+
T Consensus 62 ~~------~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~iv~ 134 (234)
T 2ehd_A 62 EG------DWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRR-GGGTIVN 134 (234)
T ss_dssp HH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEE
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCcEEEE
Confidence 76 5555443 78999999996542 2456788999999998666655 334 3789999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ 433 (851)
+||..++.. ..+. ..|+.||+..|.+++.++ . ++++.
T Consensus 135 isS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~ 176 (234)
T 2ehd_A 135 VGSLAGKNP---------FKGG-----------------------------AAYNASKFGLLGLAGAAMLDLREANVRVV 176 (234)
T ss_dssp ECCTTTTSC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred ECCchhcCC---------CCCC-----------------------------chhhHHHHHHHHHHHHHHHHHhhcCcEEE
Confidence 999654321 1111 349999998888776543 2 89999
Q ss_pred EEecccccCC
Q psy11859 434 IVRPSIVLPS 443 (851)
Q Consensus 434 ivRp~~V~G~ 443 (851)
++|||.|..+
T Consensus 177 ~v~Pg~v~t~ 186 (234)
T 2ehd_A 177 NVLPGSVDTG 186 (234)
T ss_dssp EEECC-----
T ss_pred EEEeCCCcCC
Confidence 9999988654
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-16 Score=168.74 Aligned_cols=167 Identities=16% Similarity=0.169 Sum_probs=122.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.++ .+.+.. ...++.++.+|++
T Consensus 29 l~~k~vlITGasggIG~~la~~L~~~G---~~V~~~~r~~~------~~~~~-----~~~l~~----~~~~~~~~~~Dl~ 90 (272)
T 1yb1_A 29 VTGEIVLITGAGHGIGRLTAYEFAKLK---SKLVLWDINKH------GLEET-----AAKCKG----LGAKVHTFVVDCS 90 (272)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHHH----TTCCEEEEECCTT
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEEcCHH------HHHHH-----HHHHHh----cCCeEEEEEeeCC
Confidence 678999999999999999999999998 68999998642 12111 111211 1247899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++... .+..++|+
T Consensus 91 ~~~------~v~~~~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~ 164 (272)
T 1yb1_A 91 NRE------DIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVT 164 (272)
T ss_dssp CHH------HHHHHHHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CHH------HHHHHHHHHHHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 876 5555543 78999999997543 1345678999999988888777532 23689999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh--------CCC
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK--------TKL 430 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~--------~~l 430 (851)
+||..++... .+ ...|+.||+..|.+++.++ .++
T Consensus 165 isS~~~~~~~------------~~--------------------------~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi 206 (272)
T 1yb1_A 165 VASAAGHVSV------------PF--------------------------LLAYCSSKFAAVGFHKTLTDELAALQITGV 206 (272)
T ss_dssp ECCCC-CCCH------------HH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred EechhhcCCC------------CC--------------------------chhHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence 9997654321 01 1349999999998886543 279
Q ss_pred CEEEEecccccCCC
Q psy11859 431 PVVIVRPSIVLPSF 444 (851)
Q Consensus 431 ~~~ivRp~~V~G~~ 444 (851)
++.++|||.|.++.
T Consensus 207 ~v~~v~Pg~v~t~~ 220 (272)
T 1yb1_A 207 KTTCLCPNFVNTGF 220 (272)
T ss_dssp EEEEEEETHHHHCS
T ss_pred EEEEEeCCcccCCc
Confidence 99999999987764
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.5e-16 Score=166.45 Aligned_cols=167 Identities=18% Similarity=0.178 Sum_probs=124.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||+++++.|++.| .+|++++|... ++.++ .+.+++ ...++.++.+|++
T Consensus 20 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~------~~~~~-----~~~l~~----~~~~~~~~~~Dv~ 81 (277)
T 2rhc_B 20 QDSEVALVTGATSGIGLEIARRLGKEG---LRVFVCARGEE------GLRTT-----LKELRE----AGVEADGRTCDVR 81 (277)
T ss_dssp TTSCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHHH----TTCCEEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH-----HHHHHh----cCCceEEEECCCC
Confidence 578999999999999999999999998 68999998642 12111 111211 1246889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc-----CCceEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM-----KKLVAF 356 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~-----~~~~~f 356 (851)
+++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++
T Consensus 82 ~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~i 155 (277)
T 2rhc_B 82 SVP------EIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRI 155 (277)
T ss_dssp CHH------HHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEE
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEE
Confidence 876 6665554 79999999997542 2356788999999999999998754 135899
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~ 431 (851)
|++||..+... ..+. ..|+.||+..|.+++.++. ++.
T Consensus 156 v~isS~~~~~~---------~~~~-----------------------------~~Y~asK~a~~~~~~~la~e~~~~gi~ 197 (277)
T 2rhc_B 156 VNIASTGGKQG---------VVHA-----------------------------APYSASKHGVVGFTKALGLELARTGIT 197 (277)
T ss_dssp EEECCGGGTSC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHTTTEEE
T ss_pred EEECccccccC---------CCCC-----------------------------ccHHHHHHHHHHHHHHHHHHHHHhCcE
Confidence 99999654321 1111 3499999999988876542 799
Q ss_pred EEEEecccccCCC
Q psy11859 432 VVIVRPSIVLPSF 444 (851)
Q Consensus 432 ~~ivRp~~V~G~~ 444 (851)
+.++|||.|.++.
T Consensus 198 v~~v~PG~v~t~~ 210 (277)
T 2rhc_B 198 VNAVCPGFVETPM 210 (277)
T ss_dssp EEEEEECSBCSHH
T ss_pred EEEEecCcCcCch
Confidence 9999999998864
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.9e-16 Score=167.63 Aligned_cols=169 Identities=14% Similarity=0.186 Sum_probs=121.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||+++++.|++.| .+|+++.|... .+.++ .+.+.. ...++.++.+|++
T Consensus 42 l~~k~vlITGasggIG~~la~~L~~~G---~~V~~~~r~~~------~~~~~-----~~~l~~----~~~~~~~~~~Dl~ 103 (285)
T 2c07_A 42 GENKVALVTGAGRGIGREIAKMLAKSV---SHVICISRTQK------SCDSV-----VDEIKS----FGYESSGYAGDVS 103 (285)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTS---SEEEEEESSHH------HHHHH-----HHHHHT----TTCCEEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHcC---CEEEEEcCCHH------HHHHH-----HHHHHh----cCCceeEEECCCC
Confidence 568999999999999999999999988 68888877532 11111 111111 1247889999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..++ .++|+|||+||.... .+.+...+++|+.|+.++++++... .+..+||+
T Consensus 104 d~~------~v~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~ 177 (285)
T 2c07_A 104 KKE------EISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIIN 177 (285)
T ss_dssp CHH------HHHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 876 666554 378999999997642 2456788999999988888887531 13689999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... ..+. ..|+.||+..|.+++.++. ++++.
T Consensus 178 isS~~~~~~---------~~~~-----------------------------~~Y~asK~a~~~~~~~la~e~~~~gi~v~ 219 (285)
T 2c07_A 178 ISSIVGLTG---------NVGQ-----------------------------ANYSSSKAGVIGFTKSLAKELASRNITVN 219 (285)
T ss_dssp ECCTHHHHC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred ECChhhccC---------CCCC-----------------------------chHHHHHHHHHHHHHHHHHHHHHhCcEEE
Confidence 999654321 1111 3499999999888876542 89999
Q ss_pred EEecccccCCCCC
Q psy11859 434 IVRPSIVLPSFQE 446 (851)
Q Consensus 434 ivRp~~V~G~~~~ 446 (851)
++|||.|.++...
T Consensus 220 ~v~Pg~v~t~~~~ 232 (285)
T 2c07_A 220 AIAPGFISSDMTD 232 (285)
T ss_dssp EEEECSBCC----
T ss_pred EEEeCcEecCchh
Confidence 9999999987544
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=7.9e-16 Score=164.12 Aligned_cols=167 Identities=21% Similarity=0.273 Sum_probs=123.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.++ .+.+.. ...++.++.+|++
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~------~~~~~-----~~~~~~----~~~~~~~~~~D~~ 80 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGLG---ARVYTCSRNEK------ELDEC-----LEIWRE----KGLNVEGSVCDLL 80 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHHH----TTCCEEEEECCTT
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH-----HHHHHh----cCCceEEEECCCC
Confidence 578999999999999999999999998 68999998642 22111 111211 1247889999999
Q ss_pred CCcCCCCHHHHHHHh--------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHH----hcCCceEE
Q psy11859 296 QANLGIKDSDLLMLQ--------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIAL----KMKKLVAF 356 (851)
Q Consensus 296 ~~~lgls~~~~~~~~--------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~f 356 (851)
|++ ++..++ .++|+|||+||.... .+.++..+++|+.|+.++++++. +. +..++
T Consensus 81 ~~~------~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~i 153 (273)
T 1ae1_A 81 SRT------ERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS-QNGNV 153 (273)
T ss_dssp CHH------HHHHHHHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEE
Confidence 886 665554 579999999997542 24567889999999999999884 23 35799
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~ 431 (851)
|++||..++... .+. ..|+.||+..|.+.+.++. +++
T Consensus 154 v~isS~~~~~~~---------~~~-----------------------------~~Y~asK~a~~~~~~~la~e~~~~gi~ 195 (273)
T 1ae1_A 154 IFLSSIAGFSAL---------PSV-----------------------------SLYSASKGAINQMTKSLACEWAKDNIR 195 (273)
T ss_dssp EEECCGGGTSCC---------TTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEcCHhhcCCC---------CCc-----------------------------chhHHHHHHHHHHHHHHHHHHhhcCcE
Confidence 999997664321 111 3499999999998876542 899
Q ss_pred EEEEecccccCCCC
Q psy11859 432 VVIVRPSIVLPSFQ 445 (851)
Q Consensus 432 ~~ivRp~~V~G~~~ 445 (851)
+.+++||.|.++..
T Consensus 196 v~~v~Pg~v~t~~~ 209 (273)
T 1ae1_A 196 VNSVAPGVILTPLV 209 (273)
T ss_dssp EEEEEECSBC----
T ss_pred EEEEEeCCCcCchh
Confidence 99999999998753
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=8.1e-16 Score=161.72 Aligned_cols=165 Identities=15% Similarity=0.181 Sum_probs=120.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|.... ++.+ .+.+ ...++.++.+|++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~-----~~~~--------~~~~----~~~~~~~~~~Dv~ 64 (249)
T 2ew8_A 5 LKDKLAVITGGANGIGRAIAERFAVEG---ADIAIADLVPAP-----EAEA--------AIRN----LGRRVLTVKCDVS 64 (249)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCCH-----HHHH--------HHHH----TTCCEEEEECCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEcCCchh-----HHHH--------HHHh----cCCcEEEEEeecC
Confidence 578999999999999999999999998 689999987521 1111 1111 1247889999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHH----hcCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIAL----KMKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV 357 (851)
|++ ++..++ .++|+|||+||.... .+.++..+++|+.|+.++++++. +. +..++|
T Consensus 65 ~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv 137 (249)
T 2ew8_A 65 QPG------DVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRN-GWGRII 137 (249)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCeEEE
Confidence 876 555553 479999999997542 23567889999999988888753 33 368999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..++... .+. ..|+.||+..|.+.+.++. ++.+
T Consensus 138 ~isS~~~~~~~---------~~~-----------------------------~~Y~asK~a~~~~~~~la~e~~~~gi~v 179 (249)
T 2ew8_A 138 NLTSTTYWLKI---------EAY-----------------------------THYISTKAANIGFTRALASDLGKDGITV 179 (249)
T ss_dssp EECCGGGGSCC---------SSC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEcchhhccCC---------CCc-----------------------------hhHHHHHHHHHHHHHHHHHHHHhcCcEE
Confidence 99997654321 111 3499999999998877642 8999
Q ss_pred EEEecccccCCCC
Q psy11859 433 VIVRPSIVLPSFQ 445 (851)
Q Consensus 433 ~ivRp~~V~G~~~ 445 (851)
.+++||.|.++..
T Consensus 180 ~~v~Pg~v~t~~~ 192 (249)
T 2ew8_A 180 NAIAPSLVRTATT 192 (249)
T ss_dssp EEEEECCC-----
T ss_pred EEEecCcCcCccc
Confidence 9999999988753
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-16 Score=166.85 Aligned_cols=215 Identities=13% Similarity=0.067 Sum_probs=140.9
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
-+++|+||||||+|+||++++++|++.| .+|+++.+.... +..+. .+.+.. ...++.++.+|+
T Consensus 23 ~l~~k~vlVTGas~gIG~~la~~l~~~G---~~v~i~~~r~~~-----~~~~~-----~~~l~~----~~~~~~~~~~Dl 85 (267)
T 4iiu_A 23 NAMSRSVLVTGASKGIGRAIARQLAADG---FNIGVHYHRDAA-----GAQET-----LNAIVA----NGGNGRLLSFDV 85 (267)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSCHH-----HHHHH-----HHHHHH----TTCCEEEEECCT
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCchH-----HHHHH-----HHHHHh----cCCceEEEEecC
Confidence 3578999999999999999999999998 677666654321 11111 111111 234789999999
Q ss_pred CCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh----cCCceEE
Q psy11859 295 LQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK----MKKLVAF 356 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~----~~~~~~f 356 (851)
+|++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++.. ..+..++
T Consensus 86 ~~~~------~~~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~i 159 (267)
T 4iiu_A 86 ANRE------QCREVLEHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRI 159 (267)
T ss_dssp TCHH------HHHHHHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEE
Confidence 9886 6665554 79999999997642 245678899999999999998741 1236799
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHH----hC-CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY----KT-KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~----~~-~l~ 431 (851)
|++||..+... ..+. ..|+.||+..+.+.+.+ .. +++
T Consensus 160 v~isS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~~~~~la~e~~~~gi~ 201 (267)
T 4iiu_A 160 ITLSSVSGVMG---------NRGQ-----------------------------VNYSAAKAGIIGATKALAIELAKRKIT 201 (267)
T ss_dssp EEECCHHHHHC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEcchHhccC---------CCCC-----------------------------chhHHHHHHHHHHHHHHHHHHhhcCeE
Confidence 99999654321 1111 34999999777666544 33 899
Q ss_pred EEEEecccccCCCCCCchhHhhhhcCCceE-EEEcccCceeEEEeecC----CCCccEEEEeCC
Q psy11859 432 VVIVRPSIVLPSFQEPVPGWVDSLNGPVGV-LVASGKGVVRSMILNDL----STETQVFNISSN 490 (851)
Q Consensus 432 ~~ivRp~~V~G~~~~p~p~~i~~~~~~~~~-~~~~g~~v~~~~~~~~~----~~~~~iyni~~~ 490 (851)
+.+++||.|.++.....+.+...+....+. -++...++++++..... ...|+++++++|
T Consensus 202 v~~v~PG~v~t~~~~~~~~~~~~~~~~~p~~~~~~~edva~~~~~L~s~~~~~itG~~i~vdGG 265 (267)
T 4iiu_A 202 VNCIAPGLIDTGMIEMEESALKEAMSMIPMKRMGQAEEVAGLASYLMSDIAGYVTRQVISINGG 265 (267)
T ss_dssp EEEEEECSBCSTTCCCCHHHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EEEEEEeeecCCcccccHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCcccCccCCEEEeCCC
Confidence 999999999998766555544442221111 11223344444322111 245778888776
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.65 E-value=6.8e-16 Score=163.63 Aligned_cols=217 Identities=17% Similarity=0.152 Sum_probs=145.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||++++++|++.| .+|++++|.... +.+. .+.+.+. ...++.++.+|++
T Consensus 8 l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~------~~~~-----~~~l~~~---~~~~~~~~~~Dv~ 70 (262)
T 3pk0_A 8 LQGRSVVVTGGTKGIGRGIATVFARAG---ANVAVAGRSTAD------IDAC-----VADLDQL---GSGKVIGVQTDVS 70 (262)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESCHHH------HHHH-----HHHHHTT---SSSCEEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH------HHHH-----HHHHHhh---CCCcEEEEEcCCC
Confidence 578999999999999999999999998 689999886432 1111 1112111 1247899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|+
T Consensus 71 ~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~ 144 (262)
T 3pk0_A 71 DRA------QCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVL 144 (262)
T ss_dssp SHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEE
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 986 6665554 79999999997542 2456788999999999999988764 13579999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... +.|. ...|+.||+..|.+++.++. ++++.
T Consensus 145 isS~~~~~~---------~~~~----------------------------~~~Y~asK~a~~~l~~~la~e~~~~gi~vn 187 (262)
T 3pk0_A 145 TSSITGPIT---------GYPG----------------------------WSHYGATKAAQLGFMRTAAIELAPHKITVN 187 (262)
T ss_dssp ECCSBTTTB---------CCTT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred EechhhccC---------CCCC----------------------------ChhhHHHHHHHHHHHHHHHHHHHhhCcEEE
Confidence 999653200 1111 13499999999998877643 89999
Q ss_pred EEecccccCCCCCC-chhHhhhhcCCceE-EEEcccCceeEEEee--cC--CCCccEEEEeCCCC
Q psy11859 434 IVRPSIVLPSFQEP-VPGWVDSLNGPVGV-LVASGKGVVRSMILN--DL--STETQVFNISSNEV 492 (851)
Q Consensus 434 ivRp~~V~G~~~~p-~p~~i~~~~~~~~~-~~~~g~~v~~~~~~~--~~--~~~~~iyni~~~~~ 492 (851)
+++||.|.++.... .+.+.+.+....+. -++...++++++... +. ...|+++++++|..
T Consensus 188 ~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG~~ 252 (262)
T 3pk0_A 188 AIMPGNIMTEGLLENGEEYIASMARSIPAGALGTPEDIGHLAAFLATKEAGYITGQAIAVDGGQV 252 (262)
T ss_dssp EEEECSBCCHHHHTTCHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred EEEeCcCcCccccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCcCCEEEECCCee
Confidence 99999999874322 23333332222111 112234454433221 11 24688899988843
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-16 Score=169.10 Aligned_cols=215 Identities=13% Similarity=0.115 Sum_probs=143.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||++++++|++.| .+|++++|..... ..+.+.+. + .....++.++.+|++
T Consensus 47 l~~k~vlVTGas~GIG~aia~~la~~G---~~V~~~~~~~~~~-~~~~~~~~--------~----~~~~~~~~~~~~Dv~ 110 (294)
T 3r3s_A 47 LKDRKALVTGGDSGIGRAAAIAYAREG---ADVAINYLPAEEE-DAQQVKAL--------I----EECGRKAVLLPGDLS 110 (294)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEECCGGGHH-HHHHHHHH--------H----HHTTCCEEECCCCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCcchh-HHHHHHHH--------H----HHcCCcEEEEEecCC
Confidence 579999999999999999999999998 6788888763211 11111111 1 112347899999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEe
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKMK-KLVAFIHF 359 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~~-~~~~fV~v 359 (851)
|++ ++..++ .++|+|||+||.... .+.++..+++|+.|+.++++++...- .-.++|++
T Consensus 111 d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~i 184 (294)
T 3r3s_A 111 DES------FARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITT 184 (294)
T ss_dssp SHH------HHHHHHHHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEE
Confidence 876 555544 379999999997431 24567889999999999999997642 12389999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..++... .+. ..|+.||+..|.+.+.++. ++.+.+
T Consensus 185 sS~~~~~~~---------~~~-----------------------------~~Y~asKaa~~~l~~~la~e~~~~gI~vn~ 226 (294)
T 3r3s_A 185 SSIQAYQPS---------PHL-----------------------------LDYAATKAAILNYSRGLAKQVAEKGIRVNI 226 (294)
T ss_dssp CCGGGTSCC---------TTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEE
T ss_pred CChhhccCC---------CCc-----------------------------hHHHHHHHHHHHHHHHHHHHHhhcCeEEEE
Confidence 997654321 111 3499999999988876543 899999
Q ss_pred EecccccCCCC---CCchhHhhhhcCCceE-EEEcccCceeEEEeec--C--CCCccEEEEeCC
Q psy11859 435 VRPSIVLPSFQ---EPVPGWVDSLNGPVGV-LVASGKGVVRSMILND--L--STETQVFNISSN 490 (851)
Q Consensus 435 vRp~~V~G~~~---~p~p~~i~~~~~~~~~-~~~~g~~v~~~~~~~~--~--~~~~~iyni~~~ 490 (851)
++||.|.++.. ...+.+...+....+. -.+...++++++.... + ...|+++++++|
T Consensus 227 v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 290 (294)
T 3r3s_A 227 VAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGG 290 (294)
T ss_dssp EEECSBCSHHHHTTTSCGGGSTTTTTTSTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EecCcCccccccccCCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 99999998641 1122222222211111 1223355555543222 1 246889999888
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-16 Score=168.69 Aligned_cols=171 Identities=16% Similarity=0.206 Sum_probs=124.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||++++++|++.| .+|+++.|.... ..+.+.+. + .....++.++.+|++
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G---~~V~~~~r~~~~--~~~~~~~~--------~----~~~~~~~~~~~~D~~ 89 (271)
T 4iin_A 27 FTGKNVLITGASKGIGAEIAKTLASMG---LKVWINYRSNAE--VADALKNE--------L----EEKGYKAAVIKFDAA 89 (271)
T ss_dssp CSCCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHHHH--------H----HHTTCCEEEEECCTT
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCCHH--HHHHHHHH--------H----HhcCCceEEEECCCC
Confidence 578999999999999999999999998 689999985422 11111111 1 112347899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
+++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++... .+..++|+
T Consensus 90 ~~~------~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~ 163 (271)
T 4iin_A 90 SES------DFIEAIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVN 163 (271)
T ss_dssp CHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 876 6655554 79999999997643 2456788999999999998887542 13579999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... ..+. ..|+.||+..|.+++.++. ++.+.
T Consensus 164 isS~~~~~~---------~~~~-----------------------------~~Y~asK~a~~~~~~~la~e~~~~gi~v~ 205 (271)
T 4iin_A 164 VASIIGERG---------NMGQ-----------------------------TNYSASKGGMIAMSKSFAYEGALRNIRFN 205 (271)
T ss_dssp ECCHHHHHC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHHTTTEEEE
T ss_pred EechhhcCC---------CCCc-----------------------------hHhHHHHHHHHHHHHHHHHHHHHhCcEEE
Confidence 999654321 1122 3499999999998876542 89999
Q ss_pred EEecccccCCCCCC
Q psy11859 434 IVRPSIVLPSFQEP 447 (851)
Q Consensus 434 ivRp~~V~G~~~~p 447 (851)
+++||.|..+....
T Consensus 206 ~v~PG~v~T~~~~~ 219 (271)
T 4iin_A 206 SVTPGFIETDMNAN 219 (271)
T ss_dssp EEEECSBCCC----
T ss_pred EEEeCcccCCchhh
Confidence 99999998775433
|
| >1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-17 Score=153.81 Aligned_cols=111 Identities=23% Similarity=0.351 Sum_probs=95.0
Q ss_pred cCccCCCCCCCCCceeeeeccceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCc
Q psy11859 670 TGLWYPNGQIRSNRFWHYFFVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERS 749 (851)
Q Consensus 670 ~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp 749 (851)
+..+...+.|..|+..| +.++|.|..|++.|.+...|..|+++|++++||.|.++.|++.|.+...|..|+++|++++|
T Consensus 14 ~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~ 92 (124)
T 1ubd_C 14 TKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 92 (124)
T ss_dssp CCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCC
T ss_pred cCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCc
Confidence 44455577899999999 88999999999999999999999999999999999433599999999999999999999999
Q ss_pred cccCccccCccccCchhHHHhhhhcCCCCCcc
Q psy11859 750 FKCDWQDCKWQFSRSDELSRHRRSHFGIKPYP 781 (851)
Q Consensus 750 ~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~ 781 (851)
|.|....|++.|.+...|.+|+++|+++++++
T Consensus 93 ~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~q 124 (124)
T 1ubd_C 93 YVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124 (124)
T ss_dssp CCCCSTTCCCCCSSTTTTHHHHHHHC------
T ss_pred eECCCCCCCCccCCHHHHHHHHHHHcccccCC
Confidence 99951159999999999999999999998863
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=8.1e-16 Score=164.94 Aligned_cols=168 Identities=18% Similarity=0.203 Sum_probs=124.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|.... ..+.+. +.+.. ...++.++.+|++
T Consensus 27 ~~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~--~~~~~~--------~~~~~----~~~~~~~~~~D~~ 89 (283)
T 1g0o_A 27 LEGKVALVTGAGRGIGREMAMELGRRG---CKVIVNYANSTE--SAEEVV--------AAIKK----NGSDAACVKANVG 89 (283)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHH--------HHHHH----TTCCEEEEECCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCchH--HHHHHH--------HHHHH----hCCCeEEEEcCCC
Confidence 578999999999999999999999998 789999886421 011111 11111 1247889999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEee
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM-KKLVAFIHFS 360 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~vS 360 (851)
+++ ++..++ .++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|++|
T Consensus 90 ~~~------~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 163 (283)
T 1g0o_A 90 VVE------DIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 163 (283)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 876 555443 378999999997643 2456788999999999999999875 2357999999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~iv 435 (851)
|..+.... +.+. ..|+.||+..|.+++.++ . ++.+.++
T Consensus 164 S~~~~~~~--------~~~~-----------------------------~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v 206 (283)
T 1g0o_A 164 SITGQAKA--------VPKH-----------------------------AVYSGSKGAIETFARCMAIDMADKKITVNVV 206 (283)
T ss_dssp CGGGTCSS--------CSSC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEE
T ss_pred chhhccCC--------CCCC-----------------------------cchHHHHHHHHHHHHHHHHHhcccCeEEEEE
Confidence 96543210 0112 349999999999887654 2 8999999
Q ss_pred ecccccCC
Q psy11859 436 RPSIVLPS 443 (851)
Q Consensus 436 Rp~~V~G~ 443 (851)
+||.|.++
T Consensus 207 ~PG~v~t~ 214 (283)
T 1g0o_A 207 APGGIKTD 214 (283)
T ss_dssp EECCBSSH
T ss_pred ecCcccch
Confidence 99999876
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.8e-16 Score=163.39 Aligned_cols=163 Identities=16% Similarity=0.124 Sum_probs=121.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.++. ++. ..++.++.+|++
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~------~~~~~~---------~~~---~~~~~~~~~D~~ 61 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAAG---ARVVLADVLDE------EGAATA---------REL---GDAARYQHLDVT 61 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH---------HTT---GGGEEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHHH---------HHh---CCceeEEEecCC
Confidence 578999999999999999999999998 78999988642 222211 111 136889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHH----HhcCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIA----LKMKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a----~~~~~~~~fV 357 (851)
+++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++.+++ ++.+ ..++|
T Consensus 62 ~~~------~~~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv 134 (254)
T 1hdc_A 62 IEE------DWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIV 134 (254)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEE
Confidence 876 6666554 79999999997542 2456788999999998655544 4443 68999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..++... .+. ..|+.||+..|.+.+.++. ++.+
T Consensus 135 ~isS~~~~~~~---------~~~-----------------------------~~Y~asK~a~~~~~~~la~e~~~~gi~v 176 (254)
T 1hdc_A 135 NISSAAGLMGL---------ALT-----------------------------SSYGASKWGVRGLSKLAAVELGTDRIRV 176 (254)
T ss_dssp EECCGGGTSCC---------TTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECchhhccCC---------CCc-----------------------------hhHHHHHHHHHHHHHHHHHHhhhcCeEE
Confidence 99997654211 111 3499999999998876542 8999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
.++|||.|.++.
T Consensus 177 ~~v~Pg~v~t~~ 188 (254)
T 1hdc_A 177 NSVHPGMTYTPM 188 (254)
T ss_dssp EEEEECSBCCHH
T ss_pred EEEecccCcCcc
Confidence 999999998863
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-15 Score=162.25 Aligned_cols=175 Identities=18% Similarity=0.184 Sum_probs=129.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCC------CHHHHHHHHhcChhhHHHhhhCcccCCCeEE
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGL------TPKARLAEFSKLPVFERLRKECPAQLSRLHI 289 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~------~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~ 289 (851)
++||+||||||+|+||+++++.|++.| .+|++++|..... ...+.+.+.. +.+. ....++.+
T Consensus 8 l~~k~~lVTGas~gIG~a~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~~ 75 (281)
T 3s55_A 8 FEGKTALITGGARGMGRSHAVALAEAG---ADIAICDRCENSDVVGYPLATADDLAETV-----ALVE----KTGRRCIS 75 (281)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSCCTTCSSCCCCHHHHHHHH-----HHHH----HTTCCEEE
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC---CeEEEEeCCccccccccccccHHHHHHHH-----HHHH----hcCCeEEE
Confidence 578999999999999999999999998 7899999974321 1122222211 1111 12357899
Q ss_pred EEcCCCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CC
Q psy11859 290 IEGDILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KK 352 (851)
Q Consensus 290 v~gDi~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~ 352 (851)
+.+|++|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+
T Consensus 76 ~~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~ 149 (281)
T 3s55_A 76 AKVDVKDRA------ALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRN 149 (281)
T ss_dssp EECCTTCHH------HHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT
T ss_pred EeCCCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 999999986 6666554 79999999997542 2456788999999999999987431 13
Q ss_pred ceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----
Q psy11859 353 LVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT---- 428 (851)
Q Consensus 353 ~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~---- 428 (851)
..++|++||..+... ..+. ..|+.||+..+.+.+.++.
T Consensus 150 ~g~iv~isS~~~~~~---------~~~~-----------------------------~~Y~asK~a~~~~~~~la~e~~~ 191 (281)
T 3s55_A 150 YGRIVTVSSMLGHSA---------NFAQ-----------------------------ASYVSSKWGVIGLTKCAAHDLVG 191 (281)
T ss_dssp CEEEEEECCGGGGSC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHTGG
T ss_pred CCEEEEECChhhcCC---------CCCC-----------------------------chhHHHHHHHHHHHHHHHHHHhh
Confidence 578999999755421 1111 3499999999998876643
Q ss_pred -CCCEEEEecccccCCCCC
Q psy11859 429 -KLPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 429 -~l~~~ivRp~~V~G~~~~ 446 (851)
++++.+++||.|.+|...
T Consensus 192 ~gi~vn~v~PG~v~t~~~~ 210 (281)
T 3s55_A 192 YGITVNAVAPGNIETPMTH 210 (281)
T ss_dssp GTEEEEEEEECSBCSTTTS
T ss_pred cCcEEEEEecCcccCcccc
Confidence 899999999999998654
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=6.6e-16 Score=162.06 Aligned_cols=163 Identities=18% Similarity=0.171 Sum_probs=123.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.+ +. + ..++.++.+|++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~------~~~~---------~~-~----~~~~~~~~~D~~ 60 (246)
T 2ag5_A 4 LDGKVIILTAAAQGIGQAAALAFAREG---AKVIATDINES------KLQE---------LE-K----YPGIQTRVLDVT 60 (246)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHGG---------GG-G----STTEEEEECCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHH------HHHH---------HH-h----ccCceEEEeeCC
Confidence 468999999999999999999999998 68999988532 2211 11 0 127889999999
Q ss_pred CCcCCCCHHHHHHH---hcCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEeeee
Q psy11859 296 QANLGIKDSDLLML---QEEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHFSTA 362 (851)
Q Consensus 296 ~~~lgls~~~~~~~---~~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~vSTa 362 (851)
|++ ++..+ +.++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|++||.
T Consensus 61 ~~~------~~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~ 134 (246)
T 2ag5_A 61 KKK------QIDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSV 134 (246)
T ss_dssp CHH------HHHHHHHHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCS
T ss_pred CHH------HHHHHHHHhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEech
Confidence 886 55544 3479999999997643 2456788999999999999988631 136899999996
Q ss_pred eeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEec
Q psy11859 363 FCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVRP 437 (851)
Q Consensus 363 ~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivRp 437 (851)
.+.... +.+. ..|+.||+..|.+++.++. ++++.++||
T Consensus 135 ~~~~~~--------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~P 177 (246)
T 2ag5_A 135 ASSVKG--------VVNR-----------------------------CVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCP 177 (246)
T ss_dssp BTTTBC--------CTTB-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred HhCcCC--------CCCC-----------------------------ccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEee
Confidence 543211 0011 3499999999998877642 899999999
Q ss_pred ccccCCC
Q psy11859 438 SIVLPSF 444 (851)
Q Consensus 438 ~~V~G~~ 444 (851)
|.|+++.
T Consensus 178 g~v~t~~ 184 (246)
T 2ag5_A 178 GTVDTPS 184 (246)
T ss_dssp SCEECHH
T ss_pred CcCcCcc
Confidence 9999874
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.3e-16 Score=164.33 Aligned_cols=212 Identities=13% Similarity=0.094 Sum_probs=141.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|..... +.+.+. +.. ...++.++.+|++
T Consensus 32 l~~k~vlITGasggIG~~la~~L~~~G---~~V~~~~r~~~~~---~~~~~~--------~~~----~~~~~~~~~~Dl~ 93 (279)
T 3ctm_A 32 LKGKVASVTGSSGGIGWAVAEAYAQAG---ADVAIWYNSHPAD---EKAEHL--------QKT----YGVHSKAYKCNIS 93 (279)
T ss_dssp CTTCEEEETTTTSSHHHHHHHHHHHHT---CEEEEEESSSCCH---HHHHHH--------HHH----HCSCEEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHH---HHHHHH--------HHh----cCCcceEEEeecC
Confidence 578999999999999999999999998 6899999976431 222111 111 1237889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc------c---hhHHHHHHHHHHH----HHHHHHHHHhcCCceE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL------E---AELKENVAANTRG----TQRLLDIALKMKKLVA 355 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~------~---~~~~~~~~~Nv~G----t~~ll~~a~~~~~~~~ 355 (851)
+++ ++..+++ .+|+|||+||.... . +.+...+++|+.| ++++++++++.+ ..+
T Consensus 94 ~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~ 166 (279)
T 3ctm_A 94 DPK------SVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG-KGS 166 (279)
T ss_dssp CHH------HHHHHHHHHHHHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCE
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCe
Confidence 876 6665554 49999999997543 2 3456789999999 567777776654 789
Q ss_pred EEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CC
Q psy11859 356 FIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KL 430 (851)
Q Consensus 356 fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l 430 (851)
||++||..+.... ...+. ..|+.||+..|.+++.++. +
T Consensus 167 iv~isS~~~~~~~-------~~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~~- 209 (279)
T 3ctm_A 167 LIITSSISGKIVN-------IPQLQ-----------------------------APYNTAKAACTHLAKSLAIEWAPFA- 209 (279)
T ss_dssp EEEECCCTTSCC----------CCH-----------------------------HHHHHHHHHHHHHHHHHHHHTTTTC-
T ss_pred EEEECchHhccCC-------CCCCc-----------------------------ccHHHHHHHHHHHHHHHHHHhcccC-
Confidence 9999997543210 01111 3499999999999987643 6
Q ss_pred CEEEEecccccCCCCCCc-hhHhhhhcC--CceEEEEcccCceeEEEeecC----CCCccEEEEeCC
Q psy11859 431 PVVIVRPSIVLPSFQEPV-PGWVDSLNG--PVGVLVASGKGVVRSMILNDL----STETQVFNISSN 490 (851)
Q Consensus 431 ~~~ivRp~~V~G~~~~p~-p~~i~~~~~--~~~~~~~~g~~v~~~~~~~~~----~~~~~iyni~~~ 490 (851)
.+.+++||.|.++..... +.+...+.. +.+ -++...++++.+..... ...|.++++++|
T Consensus 210 ~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~p~~-~~~~~~dvA~~~~~l~s~~~~~~tG~~i~vdgG 275 (279)
T 3ctm_A 210 RVNTISPGYIDTDITDFASKDMKAKWWQLTPLG-REGLTQELVGGYLYLASNASTFTTGSDVVIDGG 275 (279)
T ss_dssp EEEEEEECSBSSTTTSSCCHHHHHHHHHHSTTC-SCBCGGGTHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CEEEEeccCCccccccccChHHHHHHHHhCCcc-CCcCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence 899999999988754321 222221111 111 02234455554432221 245788888877
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-16 Score=168.08 Aligned_cols=171 Identities=19% Similarity=0.204 Sum_probs=119.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||+++++.|++.| .+|++++|... +++.++ .+.+. ....++.++.+|++
T Consensus 27 ~~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~~~~~-----~~~~~~-----~~~~~----~~~~~~~~~~~Dv~ 89 (280)
T 4da9_A 27 KARPVAIVTGGRRGIGLGIARALAASG---FDIAITGIGDA-----EGVAPV-----IAELS----GLGARVIFLRADLA 89 (280)
T ss_dssp CCCCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCCH-----HHHHHH-----HHHHH----HTTCCEEEEECCTT
T ss_pred cCCCEEEEecCCCHHHHHHHHHHHHCC---CeEEEEeCCCH-----HHHHHH-----HHHHH----hcCCcEEEEEecCC
Confidence 578999999999999999999999998 68888886432 111111 01111 12347999999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCC-----c----chhHHHHHHHHHHHHHHHHHHHHhcC------Cc
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLK-----L----EAELKENVAANTRGTQRLLDIALKMK------KL 353 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~-----~----~~~~~~~~~~Nv~Gt~~ll~~a~~~~------~~ 353 (851)
|++ ++..+++ ++|+|||+||... + .+.++..+++|+.|+.++++++...- .-
T Consensus 90 d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~ 163 (280)
T 4da9_A 90 DLS------SHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARAS 163 (280)
T ss_dssp SGG------GHHHHHHHHHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCC
Confidence 987 5555554 7999999999732 1 24567889999999999999886531 13
Q ss_pred eEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----
Q psy11859 354 VAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----- 428 (851)
Q Consensus 354 ~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----- 428 (851)
.++|++||..+... .|. ...|+.||+..+.+.+.++.
T Consensus 164 g~Iv~isS~~~~~~----------~~~----------------------------~~~Y~asKaa~~~l~~~la~e~~~~ 205 (280)
T 4da9_A 164 RSIINITSVSAVMT----------SPE----------------------------RLDYCMSKAGLAAFSQGLALRLAET 205 (280)
T ss_dssp EEEEEECCC-----------------C----------------------------CHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CEEEEEcchhhccC----------CCC----------------------------ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999655321 111 12499999999988876542
Q ss_pred CCCEEEEecccccCCCCCC
Q psy11859 429 KLPVVIVRPSIVLPSFQEP 447 (851)
Q Consensus 429 ~l~~~ivRp~~V~G~~~~p 447 (851)
++.+.+++||.|..+....
T Consensus 206 gI~vn~v~PG~v~T~~~~~ 224 (280)
T 4da9_A 206 GIAVFEVRPGIIRSDMTAA 224 (280)
T ss_dssp TEEEEEEEECCBCC-----
T ss_pred CcEEEEEeecCCcCCchhh
Confidence 7999999999998875443
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=161.23 Aligned_cols=156 Identities=18% Similarity=0.208 Sum_probs=122.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||+++++.|++.| .+|++++|.... ..++.++.+|++
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~--------------------------~~~~~~~~~Dl~ 56 (264)
T 2dtx_A 6 LRDKVVIVTGASMGIGRAIAERFVDEG---SKVIDLSIHDPG--------------------------EAKYDHIECDVT 56 (264)
T ss_dssp GTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESSCCC--------------------------SCSSEEEECCTT
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEecCccc--------------------------CCceEEEEecCC
Confidence 578999999999999999999999998 689999987542 126788999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|+
T Consensus 57 ~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~ 130 (264)
T 2dtx_A 57 NPD------QVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVN 130 (264)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 876 6665554 79999999997543 2356788999999999999988653 13579999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----CCCEEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----KLPVVI 434 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----~l~~~i 434 (851)
+||..++.. ..+. ..|+.||+..|.+++.++. .+.+.+
T Consensus 131 isS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~i~vn~ 172 (264)
T 2dtx_A 131 ISSVQASII---------TKNA-----------------------------SAYVTSKHAVIGLTKSIALDYAPLLRCNA 172 (264)
T ss_dssp ECCGGGTSC---------CTTB-----------------------------HHHHHHHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred ECCchhccC---------CCCc-----------------------------hhHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 999755431 1111 3499999999999877653 389999
Q ss_pred EecccccCCC
Q psy11859 435 VRPSIVLPSF 444 (851)
Q Consensus 435 vRp~~V~G~~ 444 (851)
++||.|.++.
T Consensus 173 v~PG~v~t~~ 182 (264)
T 2dtx_A 173 VCPATIDTPL 182 (264)
T ss_dssp EEECSBCSHH
T ss_pred EEeCCCcCcc
Confidence 9999997653
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=163.85 Aligned_cols=169 Identities=13% Similarity=0.095 Sum_probs=125.5
Q ss_pred cCCCEEEEecCc--cHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 216 YAGRSVLVTGGT--GFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 216 ~~~k~VlVTGat--GFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
++||+||||||+ |+||+++++.|++.| .+|++++|... ..+.+.++ .... ..+.++.+|
T Consensus 19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G---~~V~~~~r~~~---~~~~~~~l---------~~~~----~~~~~~~~D 79 (285)
T 2p91_A 19 LEGKRALITGVANERSIAYGIAKSFHREG---AQLAFTYATPK---LEKRVREI---------AKGF----GSDLVVKCD 79 (285)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTT---CEEEEEESSGG---GHHHHHHH---------HHHT----TCCCEEECC
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcC---CEEEEEeCCHH---HHHHHHHH---------HHhc----CCeEEEEcC
Confidence 578999999999 999999999999998 78999998753 22223222 1111 236789999
Q ss_pred CCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-----------chhHHHHHHHHHHHHHHHHHHHHhcC--Cc
Q psy11859 294 ILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-----------EAELKENVAANTRGTQRLLDIALKMK--KL 353 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-----------~~~~~~~~~~Nv~Gt~~ll~~a~~~~--~~ 353 (851)
+++++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++...- +-
T Consensus 80 l~~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~ 153 (285)
T 2p91_A 80 VSLDE------DIKNLKKFLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRN 153 (285)
T ss_dssp TTCHH------HHHHHHHHHHHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSC
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC
Confidence 99876 6665554 78999999997542 13566889999999999999997642 12
Q ss_pred eEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-
Q psy11859 354 VAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T- 428 (851)
Q Consensus 354 ~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~- 428 (851)
.++|++||..+... ..+. ..|+.||+..|.+++.++ .
T Consensus 154 g~iv~isS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~ 195 (285)
T 2p91_A 154 GAIVTLSYYGAEKV---------VPHY-----------------------------NVMGIAKAALESTVRYLAYDIAKH 195 (285)
T ss_dssp CEEEEEECGGGTSB---------CTTT-----------------------------THHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEccchhccC---------CCCc-----------------------------cHHHHHHHHHHHHHHHHHHHhccc
Confidence 69999999654321 1112 349999999999887654 2
Q ss_pred CCCEEEEecccccCCCCCC
Q psy11859 429 KLPVVIVRPSIVLPSFQEP 447 (851)
Q Consensus 429 ~l~~~ivRp~~V~G~~~~p 447 (851)
++.+.+++||.|.++....
T Consensus 196 gi~v~~v~PG~v~t~~~~~ 214 (285)
T 2p91_A 196 GHRINAISAGPVKTLAAYS 214 (285)
T ss_dssp TCEEEEEEECCCCCSCC--
T ss_pred CcEEEEEEeCcccCchhhc
Confidence 8999999999999986543
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-15 Score=165.02 Aligned_cols=214 Identities=17% Similarity=0.146 Sum_probs=143.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||++++++|++.| .+|++++|..... +.+. +.+.+. ...++.++.+|++
T Consensus 39 l~~k~vlVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~~---~~~~--------~~l~~~---~~~~~~~~~~Dv~ 101 (293)
T 3rih_A 39 LSARSVLVTGGTKGIGRGIATVFARAG---ANVAVAARSPREL---SSVT--------AELGEL---GAGNVIGVRLDVS 101 (293)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSGGGG---HHHH--------HHHTTS---SSSCEEEEECCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHHH---HHHH--------HHHHhh---CCCcEEEEEEeCC
Confidence 578999999999999999999999998 6899999875432 1111 111111 1247899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHH----hcCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIAL----KMKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV 357 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++. +. +..++|
T Consensus 102 d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iV 174 (293)
T 3rih_A 102 DPG------SCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTAS-GRGRVI 174 (293)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH-SSCEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEE
Confidence 986 5555443 68999999997543 24567889999999999999984 33 357999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+... ...+. ..|+.||+..+.+.+.++. ++.+
T Consensus 175 ~isS~~~~~~--------~~~~~-----------------------------~~Y~asKaa~~~l~~~la~e~~~~gI~v 217 (293)
T 3rih_A 175 LTSSITGPVT--------GYPGW-----------------------------SHYGASKAAQLGFMRTAAIELAPRGVTV 217 (293)
T ss_dssp EECCSBTTTB--------BCTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTCEE
T ss_pred EEeChhhccC--------CCCCC-----------------------------HHHHHHHHHHHHHHHHHHHHHhhhCeEE
Confidence 9999654210 01111 3499999999988876542 8999
Q ss_pred EEEecccccCCCCCC-chhHhhhhcCCceE-EEEcccCceeEEEee--cC--CCCccEEEEeCC
Q psy11859 433 VIVRPSIVLPSFQEP-VPGWVDSLNGPVGV-LVASGKGVVRSMILN--DL--STETQVFNISSN 490 (851)
Q Consensus 433 ~ivRp~~V~G~~~~p-~p~~i~~~~~~~~~-~~~~g~~v~~~~~~~--~~--~~~~~iyni~~~ 490 (851)
.+++||.|.++.... .+.+.+.+....+. .++...++++.+... +. ...|+++++++|
T Consensus 218 n~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdGG 281 (293)
T 3rih_A 218 NAILPGNILTEGLVDMGEEYISGMARSIPMGMLGSPVDIGHLAAFLATDEAGYITGQAIVVDGG 281 (293)
T ss_dssp EEEEECSBCCHHHHHTCHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EEEecCCCcCcchhhccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 999999999874321 23333332222111 112233444433221 11 246788999887
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=8.5e-16 Score=162.26 Aligned_cols=160 Identities=20% Similarity=0.234 Sum_probs=120.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|.... +.+. +.+ .+ .++.+|++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~----~~~~--------~~~--------~~-~~~~~D~~ 59 (256)
T 2d1y_A 4 FAGKGVLVTGGARGIGRAIAQAFAREG---ALVALCDLRPEG----KEVA--------EAI--------GG-AFFQVDLE 59 (256)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSTTH----HHHH--------HHH--------TC-EEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCChhH----HHHH--------HHh--------hC-CEEEeeCC
Confidence 468999999999999999999999998 689999987532 1111 111 13 68899999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|+
T Consensus 60 ~~~------~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~ 133 (256)
T 2d1y_A 60 DER------ERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVN 133 (256)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 876 5555543 78999999997543 2356788999999999999988642 23689999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... ..+. ..|+.||+..|.+++.++. ++.+.
T Consensus 134 isS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~ 175 (256)
T 2d1y_A 134 VASVQGLFA---------EQEN-----------------------------AAYNASKGGLVNLTRSLALDLAPLRIRVN 175 (256)
T ss_dssp ECCGGGTSB---------CTTB-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred EccccccCC---------CCCC-----------------------------hhHHHHHHHHHHHHHHHHHHHhhcCeEEE
Confidence 999754321 0111 3499999999998876642 89999
Q ss_pred EEecccccCC
Q psy11859 434 IVRPSIVLPS 443 (851)
Q Consensus 434 ivRp~~V~G~ 443 (851)
+++||.|.++
T Consensus 176 ~v~Pg~v~t~ 185 (256)
T 2d1y_A 176 AVAPGAIATE 185 (256)
T ss_dssp EEEECSBCCH
T ss_pred EEeeCCccCc
Confidence 9999999765
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=164.28 Aligned_cols=214 Identities=13% Similarity=0.163 Sum_probs=145.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||++++++|++.| .+|++++|.... ..+.+.+.. .....++.++.+|++
T Consensus 45 l~gk~vlVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~--~~~~~~~~~------------~~~~~~~~~~~~Dv~ 107 (291)
T 3ijr_A 45 LKGKNVLITGGDSGIGRAVSIAFAKEG---ANIAIAYLDEEG--DANETKQYV------------EKEGVKCVLLPGDLS 107 (291)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHHHHH------------HTTTCCEEEEESCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCchH--HHHHHHHHH------------HhcCCcEEEEECCCC
Confidence 689999999999999999999999998 789999887532 111111111 112347899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEe
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKM-KKLVAFIHF 359 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~v 359 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... ..-.++|++
T Consensus 108 d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i 181 (291)
T 3ijr_A 108 DEQ------HCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT 181 (291)
T ss_dssp SHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence 986 6655544 78999999996532 2456788999999999999999764 223589999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..++.. ..+. ..|+.||+..|.+++.++. ++.+.+
T Consensus 182 sS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~l~~~la~e~~~~gi~vn~ 223 (291)
T 3ijr_A 182 ASIVAYEG---------NETL-----------------------------IDYSATKGAIVAFTRSLSQSLVQKGIRVNG 223 (291)
T ss_dssp CCTHHHHC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEE
T ss_pred echHhcCC---------CCCC-----------------------------hhHHHHHHHHHHHHHHHHHHHhhcCEEEEE
Confidence 99655321 1111 3499999999998876643 899999
Q ss_pred EecccccCCCCCC--chhHhhhhcCCceE-EEEcccCceeEEEeecC----CCCccEEEEeCC
Q psy11859 435 VRPSIVLPSFQEP--VPGWVDSLNGPVGV-LVASGKGVVRSMILNDL----STETQVFNISSN 490 (851)
Q Consensus 435 vRp~~V~G~~~~p--~p~~i~~~~~~~~~-~~~~g~~v~~~~~~~~~----~~~~~iyni~~~ 490 (851)
|+||.|.++.... -+.....+....+. -++...++++++..... ...|+++++++|
T Consensus 224 v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 286 (291)
T 3ijr_A 224 VAPGPIWTPLIPSSFDEKKVSQFGSNVPMQRPGQPYELAPAYVYLASSDSSYVTGQMIHVNGG 286 (291)
T ss_dssp EEECSBCSTHHHHHSCHHHHHHTTTTSTTSSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred EeeCCCcCCcccccCCHHHHHHHHccCCCCCCcCHHHHHHHHHHHhCCccCCCcCCEEEECCC
Confidence 9999999874211 11222222211111 11233455554432221 246788998887
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=163.46 Aligned_cols=169 Identities=19% Similarity=0.234 Sum_probs=122.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.++ .+.++... ...++.++.+|++
T Consensus 30 l~~k~vlVTGasggIG~~la~~l~~~G---~~V~~~~r~~~------~~~~~-----~~~~~~~~--~~~~~~~~~~Dl~ 93 (279)
T 1xg5_A 30 WRDRLALVTGASGGIGAAVARALVQQG---LKVVGCARTVG------NIEEL-----AAECKSAG--YPGTLIPYRCDLS 93 (279)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHHHTT--CSSEEEEEECCTT
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEECChH------HHHHH-----HHHHHhcC--CCceEEEEEecCC
Confidence 678999999999999999999999998 68999998642 22111 11122111 1236889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHH----HHHHHHHHHhcCCc--eE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRG----TQRLLDIALKMKKL--VA 355 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~G----t~~ll~~a~~~~~~--~~ 355 (851)
+++ ++..+++ ++|+|||+||.... .+.+...+++|+.| ++.++.++++.+ . .+
T Consensus 94 ~~~------~v~~~~~~~~~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~-~~~g~ 166 (279)
T 1xg5_A 94 NEE------DILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERN-VDDGH 166 (279)
T ss_dssp CHH------HHHHHHHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CCSCE
T ss_pred CHH------HHHHHHHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCCce
Confidence 886 6665554 79999999996542 24567889999999 777777777664 4 79
Q ss_pred EEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh------C-
Q psy11859 356 FIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK------T- 428 (851)
Q Consensus 356 fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~------~- 428 (851)
+|++||..++.. .|..+ ...|+.||+..|.+++.++ .
T Consensus 167 iv~isS~~~~~~----------~~~~~--------------------------~~~Y~~sK~a~~~~~~~la~e~~~~~~ 210 (279)
T 1xg5_A 167 IININSMSGHRV----------LPLSV--------------------------THFYSATKYAVTALTEGLRQELREAQT 210 (279)
T ss_dssp EEEECCGGGTSC----------CSCGG--------------------------GHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEcChhhccc----------CCCCC--------------------------CchhHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999765421 11111 1349999999888776542 3
Q ss_pred CCCEEEEecccccCC
Q psy11859 429 KLPVVIVRPSIVLPS 443 (851)
Q Consensus 429 ~l~~~ivRp~~V~G~ 443 (851)
++++.+++||.|.++
T Consensus 211 ~i~v~~v~Pg~v~t~ 225 (279)
T 1xg5_A 211 HIRATCISPGVVETQ 225 (279)
T ss_dssp CCEEEEEEESCBCSS
T ss_pred CeEEEEEecCcccch
Confidence 799999999999876
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=161.73 Aligned_cols=212 Identities=11% Similarity=0.059 Sum_probs=142.3
Q ss_pred cCCCEEEEecCc--cHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 216 YAGRSVLVTGGT--GFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 216 ~~~k~VlVTGat--GFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
+++|+||||||+ |+||+++++.|++.| .+|++++|... ..+.+.++ .... ....++.+|
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G---~~V~~~~r~~~---~~~~~~~l---------~~~~----~~~~~~~~D 67 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREG---AELAFTYQNDK---LKGRVEEF---------AAQL----GSDIVLQCD 67 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTT---CEEEEEESSTT---THHHHHHH---------HHHT----TCCCEEECC
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCC---CEEEEEcCcHH---HHHHHHHH---------HHhc----CCcEEEEcc
Confidence 578999999999 999999999999998 78999999762 22222221 1111 134688999
Q ss_pred CCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc------------chhHHHHHHHHHHHHHHHHHHHHhcC-Cc
Q psy11859 294 ILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL------------EAELKENVAANTRGTQRLLDIALKMK-KL 353 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~------------~~~~~~~~~~Nv~Gt~~ll~~a~~~~-~~ 353 (851)
+++++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++...- .-
T Consensus 68 ~~~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~ 141 (265)
T 1qsg_A 68 VAEDA------SIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPG 141 (265)
T ss_dssp TTCHH------HHHHHHHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccC
Confidence 99876 6665554 68999999997542 13466789999999999999997642 12
Q ss_pred eEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----
Q psy11859 354 VAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----- 428 (851)
Q Consensus 354 ~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----- 428 (851)
.++|++||..++.. ..+. ..|+.||+..|.+++.++.
T Consensus 142 g~iv~isS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~ 183 (265)
T 1qsg_A 142 SALLTLSYLGAERA---------IPNY-----------------------------NVMGLAKASLEANVRYMANAMGPE 183 (265)
T ss_dssp EEEEEEECGGGTSB---------CTTT-----------------------------THHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CEEEEEcchhhccC---------CCCc-----------------------------hHHHHHHHHHHHHHHHHHHHhhhc
Confidence 48999999654321 1112 3499999999998876542
Q ss_pred CCCEEEEecccccCCCCCCc---hhHhhhhcCCceE-EEEcccCceeEEEeecC----CCCccEEEEeCC
Q psy11859 429 KLPVVIVRPSIVLPSFQEPV---PGWVDSLNGPVGV-LVASGKGVVRSMILNDL----STETQVFNISSN 490 (851)
Q Consensus 429 ~l~~~ivRp~~V~G~~~~p~---p~~i~~~~~~~~~-~~~~g~~v~~~~~~~~~----~~~~~iyni~~~ 490 (851)
++++.+++||.|.++..... +.+.+.+....++ .++...++++++..... ...|+++++++|
T Consensus 184 gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG 253 (265)
T 1qsg_A 184 GVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGG 253 (265)
T ss_dssp TEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred CeEEEEEEeCCCccchhhcccccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCchhcCccCCEEEECCC
Confidence 79999999999999865432 3333322111110 01223445444332221 225778888887
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=161.28 Aligned_cols=170 Identities=13% Similarity=0.114 Sum_probs=123.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||+++++.|++.| .+|++++|.... ..+.+. +.+... ...++.++.+|++
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~--~~~~~~--------~~~~~~---~~~~~~~~~~D~~ 65 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQG---ADIVLNGFGDAA--EIEKVR--------AGLAAQ---HGVKVLYDGADLS 65 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEECCSCHH--HHHHHH--------HHHHHH---HTSCEEEECCCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcC---CEEEEEeCCcch--HHHHHH--------HHHHhc---cCCcEEEEECCCC
Confidence 468999999999999999999999998 688998886421 011111 111111 0236889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|+
T Consensus 66 ~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~ 139 (260)
T 1x1t_A 66 KGE------AVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIIN 139 (260)
T ss_dssp SHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 876 6665554 79999999997542 2456788999999999999988532 13689999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ 433 (851)
+||..+... ..+. ..|+.||+..|.+++.++ . ++.+.
T Consensus 140 isS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~ 181 (260)
T 1x1t_A 140 IASAHGLVA---------SANK-----------------------------SAYVAAKHGVVGFTKVTALETAGQGITAN 181 (260)
T ss_dssp ECCGGGTSC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHTTTTEEEE
T ss_pred ECcHHhCcC---------CCCC-----------------------------chHHHHHHHHHHHHHHHHHHhccCCEEEE
Confidence 999755321 1111 349999999998887653 2 89999
Q ss_pred EEecccccCCCC
Q psy11859 434 IVRPSIVLPSFQ 445 (851)
Q Consensus 434 ivRp~~V~G~~~ 445 (851)
+++||.|.++..
T Consensus 182 ~v~Pg~v~t~~~ 193 (260)
T 1x1t_A 182 AICPGWVRTPLV 193 (260)
T ss_dssp EEEECCBCC---
T ss_pred EEeecCccCchH
Confidence 999999988753
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-15 Score=161.67 Aligned_cols=214 Identities=13% Similarity=0.130 Sum_probs=144.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||++++++|++.| .+|++++|.... .+.+. +.+. ....++.++.+|++
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~--------~~~~----~~~~~~~~~~~Dv~ 71 (256)
T 3gaf_A 10 LNDAVAIVTGAAAGIGRAIAGTFAKAG---ASVVVTDLKSEG---AEAVA--------AAIR----QAGGKAIGLECNVT 71 (256)
T ss_dssp CTTCEEEECSCSSHHHHHHHHHHHHHT---CEEEEEESSHHH---HHHHH--------HHHH----HTTCCEEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHH--------HHHH----hcCCcEEEEECCCC
Confidence 678999999999999999999999998 689999886422 11111 1111 12357899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEe
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHF 359 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~v 359 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|++
T Consensus 72 d~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~i 145 (256)
T 3gaf_A 72 DEQ------HREAVIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNI 145 (256)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 986 6665554 79999999997543 2456788999999999999998531 235799999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..+... ..+. ..|+.||+..|.+.+.++. ++.+..
T Consensus 146 sS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~~~~~la~e~~~~gi~vn~ 187 (256)
T 3gaf_A 146 SSMAGENT---------NVRM-----------------------------ASYGSSKAAVNHLTRNIAFDVGPMGIRVNA 187 (256)
T ss_dssp CCGGGTCC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred cCHHHcCC---------CCCc-----------------------------hHHHHHHHHHHHHHHHHHHHHhhhCcEEEE
Confidence 99755321 1112 3499999999998876643 899999
Q ss_pred EecccccCCCCCC--chhHhhhhcCCceE-EEEcccCceeEEEeecC----CCCccEEEEeCCC
Q psy11859 435 VRPSIVLPSFQEP--VPGWVDSLNGPVGV-LVASGKGVVRSMILNDL----STETQVFNISSNE 491 (851)
Q Consensus 435 vRp~~V~G~~~~p--~p~~i~~~~~~~~~-~~~~g~~v~~~~~~~~~----~~~~~iyni~~~~ 491 (851)
++||.|..+.... .+.+.+.+....+. -++...++++++..... ...|+++++++|.
T Consensus 188 v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~~L~s~~~~~itG~~i~vdgG~ 251 (256)
T 3gaf_A 188 IAPGAIKTDALATVLTPEIERAMLKHTPLGRLGEAQDIANAALFLCSPAAAWISGQVLTVSGGG 251 (256)
T ss_dssp EEECCBCCHHHHHHCCHHHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred EEEccccCchhhhccCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCcccCccCCEEEECCCc
Confidence 9999998764221 12223322222111 11223455444332211 2368899998883
|
| >2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-17 Score=159.99 Aligned_cols=114 Identities=22% Similarity=0.367 Sum_probs=100.0
Q ss_pred cCccCCCCCCCCCcee-eeeccc--------eeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHH
Q psy11859 670 TGLWYPNGQIRSNRFW-HYFFVI--------FTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAH 740 (851)
Q Consensus 670 ~~~~~~~~~l~~h~~~-h~~~~~--------~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H 740 (851)
+..+.....|..|+.. |.+..+ |.|..|++.|.+...|..|+++|++++||.|..+.|++.|.+...|..|
T Consensus 32 ~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H 111 (155)
T 2rpc_A 32 DRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH 111 (155)
T ss_dssp CCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHHHHHH
T ss_pred CcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHHHHHH
Confidence 3334446778899887 776655 8999999999999999999999999999999323399999999999999
Q ss_pred HhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCC
Q psy11859 741 LRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783 (851)
Q Consensus 741 ~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~ 783 (851)
+++|++++||.|....|++.|.+...|.+|+++|++++||.|+
T Consensus 112 ~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~ 154 (155)
T 2rpc_A 112 KRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154 (155)
T ss_dssp HTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred HHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence 9999999999997112999999999999999999999999996
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.5e-16 Score=164.65 Aligned_cols=172 Identities=19% Similarity=0.199 Sum_probs=126.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||++++++|++.| .+|+++++... ++..++ .+.+. ....++.++.+|++
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G---~~V~~~~~~~~-----~~~~~~-----~~~l~----~~~~~~~~~~~Dv~ 91 (271)
T 3v2g_A 29 LAGKTAFVTGGSRGIGAAIAKRLALEG---AAVALTYVNAA-----ERAQAV-----VSEIE----QAGGRAVAIRADNR 91 (271)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCH-----HHHHHH-----HHHHH----HTTCCEEEEECCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCCH-----HHHHHH-----HHHHH----hcCCcEEEEECCCC
Confidence 689999999999999999999999998 67888866532 122111 11111 12347899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEee
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM-KKLVAFIHFS 360 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~vS 360 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... ..-.++|++|
T Consensus 92 d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is 165 (271)
T 3v2g_A 92 DAE------AIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG 165 (271)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred CHH------HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 986 6666554 79999999997542 2456788999999999999999764 2346899998
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~iv 435 (851)
|..+... +.|. ...|+.||+..|.+.+.++. ++.+.++
T Consensus 166 S~~~~~~---------~~~~----------------------------~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v 208 (271)
T 3v2g_A 166 SNLAELV---------PWPG----------------------------ISLYSASKAALAGLTKGLARDLGPRGITVNIV 208 (271)
T ss_dssp CGGGTCC---------CSTT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEE
T ss_pred ChhhccC---------CCCC----------------------------chHHHHHHHHHHHHHHHHHHHhhhhCeEEEEE
Confidence 8533110 1111 13499999999988776542 8999999
Q ss_pred ecccccCCCCCC
Q psy11859 436 RPSIVLPSFQEP 447 (851)
Q Consensus 436 Rp~~V~G~~~~p 447 (851)
+||.|.++....
T Consensus 209 ~PG~v~T~~~~~ 220 (271)
T 3v2g_A 209 HPGSTDTDMNPA 220 (271)
T ss_dssp EECSBCSSSSCS
T ss_pred ecCCCcCCcccc
Confidence 999999886543
|
| >2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.9e-17 Score=148.09 Aligned_cols=83 Identities=14% Similarity=0.209 Sum_probs=62.8
Q ss_pred hhhhhhcccccCCcccccccCCccCccccChhhHHHHHhh--hcCCCccc-cCccccCccc--cCchhHHHhhhhcCCCC
Q psy11859 704 IMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRR--HSGERSFK-CDWQDCKWQF--SRSDELSRHRRSHFGIK 778 (851)
Q Consensus 704 ~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~--H~gekp~~-C~~~~C~k~F--~~~~~L~~H~r~H~gek 778 (851)
...|..|+++|++++||+| +.|++.|.+...|..|+++ |.+++++. |. .|++.| .....|..|+++|++++
T Consensus 4 ~~~l~~H~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~--~C~~~f~f~~~~~l~~H~~~H~~~~ 79 (115)
T 2dmi_A 4 GSSGKLYGSIFTGASKFRC--KDCSAAYDTLVELTVHMNETGHYRDDNHETDN--NNPKRWSKPRKRSLLEMEGKEDAQK 79 (115)
T ss_dssp CCCCCCCCCCCCCCCSEEB--SSSSCEESSHHHHHHHHHHTCCCBCSCCCCCC--CCCSCCSSCCCCCCCCCCCSCCCCS
T ss_pred chhhhhheeeeCCCCCEEC--CccCchhcCHHHHHHHHHHhCccccCCCccCC--CCCcccccccHHHHHHHhhccCCCc
Confidence 4567778888888888888 6788888888888888877 66666554 76 788777 77777888888888888
Q ss_pred CccCCCCCCccc
Q psy11859 779 PYPCTLCVKKSL 790 (851)
Q Consensus 779 p~~C~~Cgk~f~ 790 (851)
||.|+.|++.|.
T Consensus 80 ~~~C~~C~k~f~ 91 (115)
T 2dmi_A 80 VLKCMYCGHSFE 91 (115)
T ss_dssp SCBCSSSCCBCS
T ss_pred ceECCCCCCccC
Confidence 888887777553
|
| >2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-16 Score=142.88 Aligned_cols=94 Identities=22% Similarity=0.335 Sum_probs=89.3
Q ss_pred eeeccceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCch
Q psy11859 686 HYFFVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSD 765 (851)
Q Consensus 686 h~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~ 765 (851)
....++|.|..|++.|.....|..|+++|++++||+| +.|++.|.....|..|+++|++++||.|. .|++.|.+..
T Consensus 12 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~ 87 (106)
T 2ee8_A 12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTC--DICHKAFRRQDHLRDHRYIHSKEKPFKCQ--ECGKGFCQSR 87 (106)
T ss_dssp CCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBC--SSSCCBCSCHHHHHHHGGGSCCCCTTSCS--SSCCCCSSHH
T ss_pred cCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCC--CCccchhCCHHHHHHHHHHhCCCCCeECC--CcCCcccCHH
Confidence 4567889999999999999999999999999999999 88999999999999999999999999998 8999999999
Q ss_pred hHHHhhhhcCCCCCccCC
Q psy11859 766 ELSRHRRSHFGIKPYPCT 783 (851)
Q Consensus 766 ~L~~H~r~H~gekp~~C~ 783 (851)
.|..|+++|++++||.+.
T Consensus 88 ~L~~H~~~H~~~~~~~~~ 105 (106)
T 2ee8_A 88 TLAVHKTLHMQTSSPTAA 105 (106)
T ss_dssp HHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHhCCCCCCcCC
Confidence 999999999999998753
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.5e-16 Score=168.63 Aligned_cols=170 Identities=21% Similarity=0.207 Sum_probs=121.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++|+++|++.| .+|++++|.... .+.+. +.+.... ...++.++.+|++
T Consensus 6 l~~k~vlVTGas~gIG~~la~~l~~~G---~~Vv~~~r~~~~---~~~~~--------~~l~~~~--~~~~~~~~~~Dl~ 69 (319)
T 3ioy_A 6 FAGRTAFVTGGANGVGIGLVRQLLNQG---CKVAIADIRQDS---IDKAL--------ATLEAEG--SGPEVMGVQLDVA 69 (319)
T ss_dssp CTTCEEEEETTTSTHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHH--------HHHHHHT--CGGGEEEEECCTT
T ss_pred CCCCEEEEcCCchHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHH--------HHHHhcC--CCCeEEEEECCCC
Confidence 478999999999999999999999998 689999997432 11111 1121111 1127899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhcC---------C
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKMK---------K 352 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~---------~ 352 (851)
+++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++.... .
T Consensus 70 ~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~ 143 (319)
T 3ioy_A 70 SRE------GFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQK 143 (319)
T ss_dssp CHH------HHHHHHHHHHHHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CHH------HHHHHHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCC
Confidence 886 6665554 67999999997532 24567889999999999999987542 1
Q ss_pred ceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHH----HHHHHHHHHhC
Q psy11859 353 LVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKR----LTETLVDEYKT 428 (851)
Q Consensus 353 ~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~----~aE~~v~~~~~ 428 (851)
-.++|++||..+... .|. ...|+.||+ ++|.+..++..
T Consensus 144 ~g~iV~isS~a~~~~----------~~~----------------------------~~~Y~aSKaal~~~~~~la~e~~~ 185 (319)
T 3ioy_A 144 GGHVVNTASMAAFLA----------AGS----------------------------PGIYNTTKFAVRGLSESLHYSLLK 185 (319)
T ss_dssp CCEEEEECCGGGTCC----------CSS----------------------------SHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CcEEEEecccccccC----------CCC----------------------------CHHHHHHHHHHHHHHHHHHHHhhh
Confidence 346999999765432 111 134999999 66666666655
Q ss_pred -CCCEEEEecccccCCCC
Q psy11859 429 -KLPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 429 -~l~~~ivRp~~V~G~~~ 445 (851)
++.+++|+||.|.++..
T Consensus 186 ~gi~v~~v~PG~v~T~~~ 203 (319)
T 3ioy_A 186 YEIGVSVLCPGLVKSYIY 203 (319)
T ss_dssp GTCEEEEECCCCBC----
T ss_pred cCCEEEEEEcCeEccCcc
Confidence 89999999999987653
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=9.2e-16 Score=166.05 Aligned_cols=217 Identities=14% Similarity=0.178 Sum_probs=143.1
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCc-ccCCCeEEEEcC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECP-AQLSRLHIIEGD 293 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~-~~~~~v~~v~gD 293 (851)
.+++|+||||||+|+||++++++|++.| .+|++++|... ++.++ .+.+....+ ....++.++.+|
T Consensus 15 ~l~~k~vlVTGasggIG~~la~~l~~~G---~~V~~~~r~~~------~~~~~-----~~~l~~~~~~~~~~~~~~~~~D 80 (303)
T 1yxm_A 15 LLQGQVAIVTGGATGIGKAIVKELLELG---SNVVIASRKLE------RLKSA-----ADELQANLPPTKQARVIPIQCN 80 (303)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHHHTSCTTCCCCEEEEECC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH-----HHHHHhhccccCCccEEEEecC
Confidence 4678999999999999999999999998 68999998642 12111 112222111 123579999999
Q ss_pred CCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEE
Q psy11859 294 ILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAF 356 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~f 356 (851)
+++++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++... .+..++
T Consensus 81 ~~~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~i 154 (303)
T 1yxm_A 81 IRNEE------EVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSI 154 (303)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeE
Confidence 99876 6665554 59999999995432 2356678999999999999998652 124789
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~ 431 (851)
|++||.. .. +.|. ...|+.||+..+.+...++. +++
T Consensus 155 v~isS~~-~~----------~~~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 195 (303)
T 1yxm_A 155 VNIIVPT-KA----------GFPL----------------------------AVHSGAARAGVYNLTKSLALEWACSGIR 195 (303)
T ss_dssp EEECCCC-TT----------CCTT----------------------------CHHHHHHHHHHHHHHHHHHHHTGGGTEE
T ss_pred EEEEeec-cc----------CCCc----------------------------chhhHHHHHHHHHHHHHHHHHhcccCeE
Confidence 9999964 11 1111 12499999999888876543 899
Q ss_pred EEEEecccccCCC--CCC---chhHhhhhcCCceE-EEEcccCceeEEEeecC----CCCccEEEEeCC
Q psy11859 432 VVIVRPSIVLPSF--QEP---VPGWVDSLNGPVGV-LVASGKGVVRSMILNDL----STETQVFNISSN 490 (851)
Q Consensus 432 ~~ivRp~~V~G~~--~~p---~p~~i~~~~~~~~~-~~~~g~~v~~~~~~~~~----~~~~~iyni~~~ 490 (851)
+.++|||.|+|+. ... .+.+...+....+. -.+...++++++..... ...|.++++++|
T Consensus 196 v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~i~~l~~~~~~~~~G~~~~v~gG 264 (303)
T 1yxm_A 196 INCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGG 264 (303)
T ss_dssp EEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGSTTSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EEEEecCCcccchhhhhccccchHHHHHHHhcCcccCCCCHHHHHHHHHHHhCcccccCCCcEEEECCC
Confidence 9999999999983 221 12222222111110 12223445444332221 245789999888
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-15 Score=162.41 Aligned_cols=170 Identities=14% Similarity=0.159 Sum_probs=123.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|.... .++++ -+.+.. ....++.++.+|++
T Consensus 23 l~~k~~lVTGas~GIG~~ia~~la~~G---~~V~~~~r~~~~-----~~~~~-----~~~~~~---~~~~~~~~~~~Dv~ 86 (281)
T 3v2h_A 23 MMTKTAVITGSTSGIGLAIARTLAKAG---ANIVLNGFGAPD-----EIRTV-----TDEVAG---LSSGTVLHHPADMT 86 (281)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEECCCCHH-----HHHHH-----HHHHHT---TCSSCEEEECCCTT
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCChH-----HHHHH-----HHHHhh---ccCCcEEEEeCCCC
Confidence 578999999999999999999999998 688888885321 11111 011111 11347899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|+
T Consensus 87 d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~ 160 (281)
T 3v2h_A 87 KPS------EIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIIN 160 (281)
T ss_dssp CHH------HHHHHHHHHHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHH------HHHHHHHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 986 6665554 78999999997543 2456788999999999999998421 13578999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... .|. ...|+.||+..+.+++.++. ++.+.
T Consensus 161 isS~~~~~~----------~~~----------------------------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn 202 (281)
T 3v2h_A 161 IASAHGLVA----------SPF----------------------------KSAYVAAKHGIMGLTKTVALEVAESGVTVN 202 (281)
T ss_dssp ECCGGGTSC----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred ECCcccccC----------CCC----------------------------chHHHHHHHHHHHHHHHHHHHhhhcCcEEE
Confidence 999655321 111 13499999999988876543 89999
Q ss_pred EEecccccCCCC
Q psy11859 434 IVRPSIVLPSFQ 445 (851)
Q Consensus 434 ivRp~~V~G~~~ 445 (851)
+++||.|.++..
T Consensus 203 ~v~PG~v~t~~~ 214 (281)
T 3v2h_A 203 SICPGYVLTPLV 214 (281)
T ss_dssp EEEECSBCC---
T ss_pred EEECCCCcCcch
Confidence 999999998754
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=159.76 Aligned_cols=166 Identities=17% Similarity=0.244 Sum_probs=122.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||+++++.|++.| .+|++++|... ++.++ .+.+.. ...++.++.+|++
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~------~~~~~-----~~~l~~----~~~~~~~~~~Dv~ 66 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEG---AAVAIAARRVE------KLRAL-----GDELTA----AGAKVHVLELDVA 66 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHHH----TTCCEEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHH-----HHHHHh----cCCcEEEEECCCC
Confidence 578999999999999999999999998 68999988632 22211 111211 1247889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+ .++|+
T Consensus 67 ~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~ 139 (247)
T 2jah_A 67 DRQ------GVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQ 139 (247)
T ss_dssp CHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEE
Confidence 876 6655543 79999999997532 2356788999999999999998643 12 68999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ 433 (851)
+||..+... .|. ...|+.||+..+.+.+.++ . ++++.
T Consensus 140 isS~~~~~~----------~~~----------------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~ 181 (247)
T 2jah_A 140 MSSIAGRVN----------VRN----------------------------AAVYQATKFGVNAFSETLRQEVTERGVRVV 181 (247)
T ss_dssp ECCGGGTCC----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred EccHHhcCC----------CCC----------------------------CcHHHHHHHHHHHHHHHHHHHhcccCcEEE
Confidence 999755321 111 1349999998888776553 2 89999
Q ss_pred EEecccccCCC
Q psy11859 434 IVRPSIVLPSF 444 (851)
Q Consensus 434 ivRp~~V~G~~ 444 (851)
+++||.|..+.
T Consensus 182 ~v~PG~v~T~~ 192 (247)
T 2jah_A 182 VIEPGTTDTEL 192 (247)
T ss_dssp EEEECSBSSSG
T ss_pred EEECCCCCCcc
Confidence 99999998763
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=161.99 Aligned_cols=171 Identities=16% Similarity=0.198 Sum_probs=125.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||+++++.|++.| .+|++++|.... ..+.+. +.+. ....++.++.+|++
T Consensus 26 l~~k~vlVTGas~gIG~aia~~la~~G---~~V~~~~~~~~~--~~~~~~--------~~~~----~~~~~~~~~~~D~~ 88 (269)
T 4dmm_A 26 LTDRIALVTGASRGIGRAIALELAAAG---AKVAVNYASSAG--AADEVV--------AAIA----AAGGEAFAVKADVS 88 (269)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHH--------HHHH----HTTCCEEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCChH--HHHHHH--------HHHH----hcCCcEEEEECCCC
Confidence 578999999999999999999999998 688888885321 111111 1111 12347899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|+
T Consensus 89 d~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~ 162 (269)
T 4dmm_A 89 QES------EVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIIN 162 (269)
T ss_dssp SHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 986 6665554 78999999997643 2456788999999999999988532 13468999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ 433 (851)
+||..+... ..+. ..|+.||+..+.+.+.++ . ++++.
T Consensus 163 isS~~~~~~---------~~~~-----------------------------~~Y~asK~a~~~l~~~la~e~~~~gi~vn 204 (269)
T 4dmm_A 163 IASVVGEMG---------NPGQ-----------------------------ANYSAAKAGVIGLTKTVAKELASRGITVN 204 (269)
T ss_dssp ECCHHHHHC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred ECchhhcCC---------CCCc-----------------------------hhHHHHHHHHHHHHHHHHHHHhhhCcEEE
Confidence 999654321 1111 349999998877776553 3 89999
Q ss_pred EEecccccCCCCCC
Q psy11859 434 IVRPSIVLPSFQEP 447 (851)
Q Consensus 434 ivRp~~V~G~~~~p 447 (851)
+++||.|.++....
T Consensus 205 ~v~PG~v~T~~~~~ 218 (269)
T 4dmm_A 205 AVAPGFIATDMTSE 218 (269)
T ss_dssp EEEECCBTTSCSCH
T ss_pred EEEECCCcCccccc
Confidence 99999999886543
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=161.50 Aligned_cols=212 Identities=15% Similarity=0.152 Sum_probs=142.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||++++++|++.| .+|++++|... ..+...++ . ....++.++.+|++
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~---~~~~~~~~---------~----~~~~~~~~~~~Dv~ 89 (273)
T 3uf0_A 29 LAGRTAVVTGAGSGIGRAIAHGYARAG---AHVLAWGRTDG---VKEVADEI---------A----DGGGSAEAVVADLA 89 (273)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSTH---HHHHHHHH---------H----TTTCEEEEEECCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEcCHHH---HHHHHHHH---------H----hcCCcEEEEEecCC
Confidence 679999999999999999999999998 67888886532 11111111 1 12347889999999
Q ss_pred CCcCCCCHHHHHHHh------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEe
Q psy11859 296 QANLGIKDSDLLMLQ------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHF 359 (851)
Q Consensus 296 ~~~lgls~~~~~~~~------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~v 359 (851)
|++ ++..+. .++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|++
T Consensus 90 d~~------~v~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~i 163 (273)
T 3uf0_A 90 DLE------GAANVAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTI 163 (273)
T ss_dssp CHH------HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHH------HHHHHHHHHHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 986 444443 279999999997643 2456788999999999999988431 135789999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..+... ..+. ..|+.||+..+.+++.++. ++++.+
T Consensus 164 sS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~l~~~la~e~~~~gI~vn~ 205 (273)
T 3uf0_A 164 ASMLSFQG---------GRNV-----------------------------AAYAASKHAVVGLTRALASEWAGRGVGVNA 205 (273)
T ss_dssp CCGGGTSC---------CSSC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred cchHhcCC---------CCCC-----------------------------hhHHHHHHHHHHHHHHHHHHHhhcCcEEEE
Confidence 99755321 1111 3499999999988876643 899999
Q ss_pred EecccccCCCCCCc---hhHhhhhcCCce-EEEEcccCceeEEEeecC----CCCccEEEEeCC
Q psy11859 435 VRPSIVLPSFQEPV---PGWVDSLNGPVG-VLVASGKGVVRSMILNDL----STETQVFNISSN 490 (851)
Q Consensus 435 vRp~~V~G~~~~p~---p~~i~~~~~~~~-~~~~~g~~v~~~~~~~~~----~~~~~iyni~~~ 490 (851)
++||.|.++..... +.+...+....+ --++...++++++..... ...|+++++++|
T Consensus 206 v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~v~~L~s~~a~~itG~~i~vdGG 269 (273)
T 3uf0_A 206 LAPGYVVTANTAALRADDERAAEITARIPAGRWATPEDMVGPAVFLASDAASYVHGQVLAVDGG 269 (273)
T ss_dssp EEECSBCSGGGHHHHTSHHHHHHHHHHSTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EEeCCCcCCchhhcccCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCchhcCCcCCEEEECcC
Confidence 99999998754321 122221111000 011234566555432221 246889999887
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=163.07 Aligned_cols=170 Identities=15% Similarity=0.212 Sum_probs=124.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.++ .+.+... .....++.++.+|++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~------~~~~~-----~~~~~~~-~~~~~~~~~~~~Dv~ 68 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQEG---ANVTITGRSSE------RLEET-----RQIILKS-GVSEKQVNSVVADVT 68 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHHTT-TCCGGGEEEEECCTT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH-----HHHHHHc-CCCCcceEEEEecCC
Confidence 578999999999999999999999998 68999998642 12111 1111111 000126889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-----------chhHHHHHHHHHHHHHHHHHHHHhc---CCce
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-----------EAELKENVAANTRGTQRLLDIALKM---KKLV 354 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-----------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~ 354 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+ .
T Consensus 69 ~~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g 141 (280)
T 1xkq_A 69 TED------GQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-G 141 (280)
T ss_dssp SHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-C
Confidence 886 6655544 79999999996532 1346788999999999999998753 12 6
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~ 429 (851)
++|++||..+.... ..+. ..|+.||+..|.+.+.++ . +
T Consensus 142 ~iv~isS~~~~~~~--------~~~~-----------------------------~~Y~asK~a~~~~~~~la~e~~~~g 184 (280)
T 1xkq_A 142 EIVNVSSIVAGPQA--------QPDF-----------------------------LYYAIAKAALDQYTRSTAIDLAKFG 184 (280)
T ss_dssp EEEEECCGGGSSSC--------CCSS-----------------------------HHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cEEEecCccccCCC--------CCcc-----------------------------cHHHHHHHHHHHHHHHHHHHhccCC
Confidence 89999997554321 0111 249999999999887664 2 8
Q ss_pred CCEEEEecccccCCC
Q psy11859 430 LPVVIVRPSIVLPSF 444 (851)
Q Consensus 430 l~~~ivRp~~V~G~~ 444 (851)
+++.+++||.|.++.
T Consensus 185 i~v~~v~PG~v~t~~ 199 (280)
T 1xkq_A 185 IRVNSVSPGMVETGF 199 (280)
T ss_dssp CEEEEEEECCBCSSH
T ss_pred eEEEEEeeCcCcCCc
Confidence 999999999999874
|
| >1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-16 Score=138.56 Aligned_cols=71 Identities=37% Similarity=0.825 Sum_probs=43.5
Q ss_pred cccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCCCCcc
Q psy11859 717 VRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKS 789 (851)
Q Consensus 717 ~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~Cgk~f 789 (851)
++||.|.++.|++.|.....|..|+++|++++||.|. .|++.|.+...|..|+++|++++||.|+.|++.|
T Consensus 2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 72 (90)
T 1a1h_A 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCR--ICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 72 (90)
T ss_dssp -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECT--TTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCC--CCCcccCCHHHHHHHHHHcCCCCCccCCCCCchh
Confidence 4566663224666666666666666666666666665 5666666666666666666666666666666544
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-15 Score=158.57 Aligned_cols=168 Identities=15% Similarity=0.152 Sum_probs=124.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||+++++.|++.| .+|++++|.... .+.+.+ .+ .....++.++.+|++
T Consensus 4 l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~---~~~~~~--------~~----~~~~~~~~~~~~Dv~ 65 (257)
T 3imf_A 4 MKEKVVIITGGSSGMGKGMATRFAKEG---ARVVITGRTKEK---LEEAKL--------EI----EQFPGQILTVQMDVR 65 (257)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHH--------HH----CCSTTCEEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHH--------HH----HhcCCcEEEEEccCC
Confidence 578999999999999999999999998 689999986432 111111 11 122347999999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh----cCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK----MKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~----~~~~~~fV 357 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++.. .+...++|
T Consensus 66 ~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv 139 (257)
T 3imf_A 66 NTD------DIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNII 139 (257)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 986 6665554 78999999996432 245678899999999999999843 22357899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh-----C-CCC
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK-----T-KLP 431 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~-----~-~l~ 431 (851)
++||..+... .|. ...|+.||+..+.+.+.++ . +++
T Consensus 140 ~isS~~~~~~----------~~~----------------------------~~~Y~asKaa~~~l~~~la~e~~~~~gIr 181 (257)
T 3imf_A 140 NMVATYAWDA----------GPG----------------------------VIHSAAAKAGVLAMTKTLAVEWGRKYGIR 181 (257)
T ss_dssp EECCGGGGSC----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_pred EECchhhccC----------CCC----------------------------cHHHHHHHHHHHHHHHHHHHHhccccCeE
Confidence 9999655321 111 1249999999888876543 3 899
Q ss_pred EEEEecccccCCCC
Q psy11859 432 VVIVRPSIVLPSFQ 445 (851)
Q Consensus 432 ~~ivRp~~V~G~~~ 445 (851)
+.+|+||.|.++..
T Consensus 182 vn~v~PG~v~t~~~ 195 (257)
T 3imf_A 182 VNAIAPGPIERTGG 195 (257)
T ss_dssp EEEEEECCBSSCCC
T ss_pred EEEEEECCCcCCcc
Confidence 99999999998753
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.63 E-value=9.7e-16 Score=162.61 Aligned_cols=170 Identities=15% Similarity=0.201 Sum_probs=125.3
Q ss_pred hhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 213 ARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 213 ~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
...++||+||||||+|+||++++++|++.| .+|++++|... ++.++ .+.+. ....++.++.+
T Consensus 6 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~------~~~~~-----~~~~~----~~~~~~~~~~~ 67 (264)
T 3ucx_A 6 GGLLTDKVVVISGVGPALGTTLARRCAEQG---ADLVLAARTVE------RLEDV-----AKQVT----DTGRRALSVGT 67 (264)
T ss_dssp -CTTTTCEEEEESCCTTHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHH----HTTCCEEEEEC
T ss_pred CCCcCCcEEEEECCCcHHHHHHHHHHHHCc---CEEEEEeCCHH------HHHHH-----HHHHH----hcCCcEEEEEc
Confidence 345789999999999999999999999998 68999988642 22111 11111 12347899999
Q ss_pred CCCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhcC--CceE
Q psy11859 293 DILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKMK--KLVA 355 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~~--~~~~ 355 (851)
|++|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++...- +-.+
T Consensus 68 Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~ 141 (264)
T 3ucx_A 68 DITDDA------QVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESKGA 141 (264)
T ss_dssp CTTCHH------HHHHHHHHHHHHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHTCE
T ss_pred CCCCHH------HHHHHHHHHHHHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCE
Confidence 999986 6665554 78999999987421 14567889999999999999876431 0158
Q ss_pred EEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CC
Q psy11859 356 FIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KL 430 (851)
Q Consensus 356 fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l 430 (851)
+|++||..+... ..+. ..|+.||+..+.+.+.++. ++
T Consensus 142 iv~isS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~~~~~la~e~~~~gi 183 (264)
T 3ucx_A 142 VVNVNSMVVRHS---------QAKY-----------------------------GAYKMAKSALLAMSQTLATELGEKGI 183 (264)
T ss_dssp EEEECCGGGGCC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred EEEECcchhccC---------CCcc-----------------------------HHHHHHHHHHHHHHHHHHHHhCccCe
Confidence 999999654321 1111 2499999999988876542 89
Q ss_pred CEEEEecccccCCC
Q psy11859 431 PVVIVRPSIVLPSF 444 (851)
Q Consensus 431 ~~~ivRp~~V~G~~ 444 (851)
.+.+++||.|.++.
T Consensus 184 ~vn~v~PG~v~t~~ 197 (264)
T 3ucx_A 184 RVNSVLPGYIWGGT 197 (264)
T ss_dssp EEEEEEESSCBSHH
T ss_pred EEEEEecCcccccc
Confidence 99999999998874
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-15 Score=167.32 Aligned_cols=234 Identities=15% Similarity=0.122 Sum_probs=151.1
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC-------CCCCHHHHHHHHhcChhhHHHhhhCcccCCCe
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK-------RGLTPKARLAEFSKLPVFERLRKECPAQLSRL 287 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~-------~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v 287 (851)
-++||+||||||+|+||+++++.|++.| .+|++++|.. ......+.+.+ .+. ....++
T Consensus 24 ~l~gk~vlVTGas~GIG~aia~~la~~G---~~Vv~~~r~~~~~~~~~~~~~~~~~~~~--------~~~----~~~~~~ 88 (322)
T 3qlj_A 24 VVDGRVVIVTGAGGGIGRAHALAFAAEG---ARVVVNDIGVGLDGSPASGGSAAQSVVD--------EIT----AAGGEA 88 (322)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEECCCBCTTSSBTCTTSHHHHHHH--------HHH----HTTCEE
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCcccccccccccHHHHHHHHH--------HHH----hcCCcE
Confidence 3689999999999999999999999998 7899988862 11112222211 111 122478
Q ss_pred EEEEcCCCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhcCC-
Q psy11859 288 HIIEGDILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKMKK- 352 (851)
Q Consensus 288 ~~v~gDi~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~~- 352 (851)
.++.+|++|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++...-.
T Consensus 89 ~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~ 162 (322)
T 3qlj_A 89 VADGSNVADWD------QAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRG 162 (322)
T ss_dssp EEECCCTTSHH------HHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 89999999986 6665554 79999999997642 245678899999999999998864310
Q ss_pred --------ceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHH
Q psy11859 353 --------LVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVD 424 (851)
Q Consensus 353 --------~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~ 424 (851)
-.++|++||..+... ..+. ..|+.||+..+.+++
T Consensus 163 ~~~~~~~~~g~IV~isS~~~~~~---------~~~~-----------------------------~~Y~asKaal~~l~~ 204 (322)
T 3qlj_A 163 LSKAGKAVDGRIINTSSGAGLQG---------SVGQ-----------------------------GNYSAAKAGIATLTL 204 (322)
T ss_dssp HHHTTCCCCEEEEEECCHHHHHC---------BTTC-----------------------------HHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcEEEEEcCHHHccC---------CCCC-----------------------------ccHHHHHHHHHHHHH
Confidence 148999999654311 1111 349999999998887
Q ss_pred HHhC-----CCCEEEEecccccCCCCCC-chhHhhhhcCCceEEEEcccCceeEEEeecC----CCCccEEEEeCCCCc-
Q psy11859 425 EYKT-----KLPVVIVRPSIVLPSFQEP-VPGWVDSLNGPVGVLVASGKGVVRSMILNDL----STETQVFNISSNEVE- 493 (851)
Q Consensus 425 ~~~~-----~l~~~ivRp~~V~G~~~~p-~p~~i~~~~~~~~~~~~~g~~v~~~~~~~~~----~~~~~iyni~~~~~~- 493 (851)
.++. ++.+.+|+|| +..+.... .+........ ....+...+++.++..... ...|.++++++|...
T Consensus 205 ~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~~~~~~~~~--~~~~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~~~~ 281 (322)
T 3qlj_A 205 VGAAEMGRYGVTVNAIAPS-ARTRMTETVFAEMMATQDQ--DFDAMAPENVSPLVVWLGSAEARDVTGKVFEVEGGKIRV 281 (322)
T ss_dssp HHHHHHGGGTEEEEEEEEC-TTSCCSCCSCCC----------CCTTCGGGTHHHHHHHTSGGGGGCCSCEEEEETTEEEE
T ss_pred HHHHHhcccCcEEEEecCC-CCCccchhhhhhhhhcccc--ccCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCcccc
Confidence 6543 8999999999 65443221 1111100000 0000122344444332221 235778888877321
Q ss_pred --------------cccHHHHHHHHHHHhhc
Q psy11859 494 --------------AITWGEIISRGKQLIYQ 510 (851)
Q Consensus 494 --------------~~t~~el~~~~~~~~~~ 510 (851)
..++.|+++.+.+.++.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~ 312 (322)
T 3qlj_A 282 AEGWAHGPQIDKGARWDPAELGPVVADLLGK 312 (322)
T ss_dssp EECCEEEEEEECSSCCCGGGHHHHHHHHHHH
T ss_pred CCCcccccccCccCCCCHHHHHHHHHHHhhc
Confidence 22678999999998875
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-15 Score=159.78 Aligned_cols=167 Identities=17% Similarity=0.159 Sum_probs=122.9
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++|+||||||+|+||++++++|++.| .+|++++|.... ..+.++ .+.+.. ...++.++.+|+++
T Consensus 1 ~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~----~~~~~~-----~~~~~~----~~~~~~~~~~Dv~~ 64 (258)
T 3a28_C 1 MSKVAMVTGGAQGIGRGISEKLAADG---FDIAVADLPQQE----EQAAET-----IKLIEA----ADQKAVFVGLDVTD 64 (258)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHT---CEEEEEECGGGH----HHHHHH-----HHHHHT----TTCCEEEEECCTTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCcch----HHHHHH-----HHHHHh----cCCcEEEEEccCCC
Confidence 36899999999999999999999998 689999886432 001111 111111 12478899999998
Q ss_pred CcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCc-eEEEE
Q psy11859 297 ANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKL-VAFIH 358 (851)
Q Consensus 297 ~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~-~~fV~ 358 (851)
++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+. .++|+
T Consensus 65 ~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~ 138 (258)
T 3a28_C 65 KA------NFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIIN 138 (258)
T ss_dssp HH------HHHHHHHHHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred HH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 76 6665554 79999999997543 2456788999999999999998753 124 79999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... .|. ...|+.||+..|.+.+.++. ++.+.
T Consensus 139 isS~~~~~~----------~~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn 180 (258)
T 3a28_C 139 AASIAAIQG----------FPI----------------------------LSAYSTTKFAVRGLTQAAAQELAPKGHTVN 180 (258)
T ss_dssp ECCGGGTSC----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred ECcchhccC----------CCC----------------------------chhHHHHHHHHHHHHHHHHHHHHhhCeEEE
Confidence 999755321 111 13499999999988876542 89999
Q ss_pred EEecccccCC
Q psy11859 434 IVRPSIVLPS 443 (851)
Q Consensus 434 ivRp~~V~G~ 443 (851)
+++||.|..+
T Consensus 181 ~v~PG~v~t~ 190 (258)
T 3a28_C 181 AYAPGIVGTG 190 (258)
T ss_dssp EEEECCBCSH
T ss_pred EEECCccCCh
Confidence 9999999765
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.9e-16 Score=162.46 Aligned_cols=169 Identities=15% Similarity=0.169 Sum_probs=123.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.++ .+.+....+ ..++.++.+|++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~------~~~~~-----~~~~~~~~~--~~~~~~~~~D~~ 68 (260)
T 2z1n_A 5 IQGKLAVVTAGSSGLGFASALELARNG---ARLLLFSRNRE------KLEAA-----ASRIASLVS--GAQVDIVAGDIR 68 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHHHHST--TCCEEEEECCTT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH-----HHHHHhcCC--CCeEEEEEccCC
Confidence 578999999999999999999999998 68999998642 12111 111211100 126889999999
Q ss_pred CCcCCCCHHHHHHHhc------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHH----hcCCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIAL----KMKKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV~ 358 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++.+++. +. +..++|+
T Consensus 69 ~~~------~v~~~~~~~~~~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~ 141 (260)
T 2z1n_A 69 EPG------DIDRLFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEK-GWGRMVY 141 (260)
T ss_dssp CHH------HHHHHHHHHHHTTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCEEEEE
T ss_pred CHH------HHHHHHHHHHHhcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEE
Confidence 886 6666654 59999999996532 23567889999999977777664 33 3689999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..++... .+. ..|+.||+..+.+.+.++. ++++.
T Consensus 142 isS~~~~~~~---------~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~ 183 (260)
T 2z1n_A 142 IGSVTLLRPW---------QDL-----------------------------ALSNIMRLPVIGVVRTLALELAPHGVTVN 183 (260)
T ss_dssp ECCGGGTSCC---------TTB-----------------------------HHHHHHTHHHHHHHHHHHHHHGGGTEEEE
T ss_pred ECchhhcCCC---------CCC-----------------------------chhHHHHHHHHHHHHHHHHHHhhhCeEEE
Confidence 9997654321 111 3499999999988876532 89999
Q ss_pred EEecccccCCCC
Q psy11859 434 IVRPSIVLPSFQ 445 (851)
Q Consensus 434 ivRp~~V~G~~~ 445 (851)
++|||.|.++..
T Consensus 184 ~v~Pg~v~t~~~ 195 (260)
T 2z1n_A 184 AVLPSLILTDRV 195 (260)
T ss_dssp EEEECHHHHCCC
T ss_pred EEEECCcccchh
Confidence 999999988754
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=161.94 Aligned_cols=168 Identities=16% Similarity=0.171 Sum_probs=122.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||+++++.|++.| .+|++++|... ++.++ .+.+.+..+ ..++.++.+|++
T Consensus 11 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~------~~~~~-----~~~~~~~~~--~~~~~~~~~D~~ 74 (267)
T 1iy8_A 11 FTDRVVLITGGGSGLGRATAVRLAAEG---AKLSLVDVSSE------GLEAS-----KAAVLETAP--DAEVLTTVADVS 74 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHHHHCT--TCCEEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH-----HHHHHhhcC--CceEEEEEccCC
Confidence 678999999999999999999999998 68999988642 12111 111211111 237889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHH----hcCCceEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIAL----KMKKLVAF 356 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~f 356 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++.+++. +. +..++
T Consensus 75 ~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~i 147 (267)
T 1iy8_A 75 DEA------QVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQ-GSGMV 147 (267)
T ss_dssp SHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEE
Confidence 876 6665554 78999999997543 14567889999999987766653 33 36799
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~ 431 (851)
|++||..+... ..+. ..|+.||+..|.+.+.++ . ++.
T Consensus 148 v~isS~~~~~~---------~~~~-----------------------------~~Y~asK~a~~~~~~~la~e~~~~gi~ 189 (267)
T 1iy8_A 148 VNTASVGGIRG---------IGNQ-----------------------------SGYAAAKHGVVGLTRNSAVEYGRYGIR 189 (267)
T ss_dssp EEECCGGGTSB---------CSSB-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred EEEcchhhccC---------CCCC-----------------------------ccHHHHHHHHHHHHHHHHHHHHhcCeE
Confidence 99999754321 1111 349999999998887653 2 899
Q ss_pred EEEEecccccCCC
Q psy11859 432 VVIVRPSIVLPSF 444 (851)
Q Consensus 432 ~~ivRp~~V~G~~ 444 (851)
+.+++||.|.++.
T Consensus 190 v~~v~PG~v~t~~ 202 (267)
T 1iy8_A 190 INAIAPGAIWTPM 202 (267)
T ss_dssp EEEEEECSBCSHH
T ss_pred EEEEEeCCCcCcc
Confidence 9999999998763
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=161.14 Aligned_cols=171 Identities=18% Similarity=0.177 Sum_probs=124.8
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
.-+++|+||||||+|+||+++++.|++.| .+|++++|... ++.++ .+.+.+. ...++.++.+|
T Consensus 17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~------~~~~~-----~~~l~~~---~~~~~~~~~~D 79 (267)
T 1vl8_A 17 FDLRGRVALVTGGSRGLGFGIAQGLAEAG---CSVVVASRNLE------EASEA-----AQKLTEK---YGVETMAFRCD 79 (267)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHHHH---HCCCEEEEECC
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH-----HHHHHHh---cCCeEEEEEcC
Confidence 34678999999999999999999999998 68999998642 12111 0111111 12368899999
Q ss_pred CCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh---cCCceEE
Q psy11859 294 ILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK---MKKLVAF 356 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~---~~~~~~f 356 (851)
+++++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++.. ..+..++
T Consensus 80 l~~~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~i 153 (267)
T 1vl8_A 80 VSNYE------EVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSI 153 (267)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEE
Confidence 99876 6665554 79999999997543 135677899999999999988853 1236799
Q ss_pred EEeeeee-eeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CC
Q psy11859 357 IHFSTAF-CHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KL 430 (851)
Q Consensus 357 V~vSTa~-~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l 430 (851)
|++||.. +... ..+. ..|+.||+..|.+++.++. ++
T Consensus 154 v~isS~~~~~~~---------~~~~-----------------------------~~Y~asK~a~~~~~~~la~e~~~~gi 195 (267)
T 1vl8_A 154 INIGSLTVEEVT---------MPNI-----------------------------SAYAASKGGVASLTKALAKEWGRYGI 195 (267)
T ss_dssp EEECCGGGTCCC---------SSSC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred EEECCcchhccC---------CCCC-----------------------------hhHHHHHHHHHHHHHHHHHHhcccCe
Confidence 9999965 2110 1111 3499999999998876542 89
Q ss_pred CEEEEecccccCCCC
Q psy11859 431 PVVIVRPSIVLPSFQ 445 (851)
Q Consensus 431 ~~~ivRp~~V~G~~~ 445 (851)
.+.+++||.|..+..
T Consensus 196 ~v~~v~PG~v~T~~~ 210 (267)
T 1vl8_A 196 RVNVIAPGWYRTKMT 210 (267)
T ss_dssp EEEEEEECCBCSTTT
T ss_pred EEEEEEeccCccccc
Confidence 999999999987753
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-15 Score=156.67 Aligned_cols=159 Identities=21% Similarity=0.201 Sum_probs=119.1
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+|+||||||+|+||++++++|++.| .+|++++|.... +.+ .+ .+.++.+|+++
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G---~~V~~~~r~~~~------~~~--------~~---------~~~~~~~D~~~- 54 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARG---YRVAIASRNPEE------AAQ--------SL---------GAVPLPTDLEK- 54 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCHH------HHH--------HH---------TCEEEECCTTT-
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH------HHH--------hh---------CcEEEecCCch-
Confidence 6899999999999999999999998 789999997532 110 01 26788999998
Q ss_pred cCCCCHHHHHHH-------hcCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEee
Q psy11859 298 NLGIKDSDLLML-------QEEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHFS 360 (851)
Q Consensus 298 ~lgls~~~~~~~-------~~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~vS 360 (851)
+ +...+ ..++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|++|
T Consensus 55 ~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~is 128 (239)
T 2ekp_A 55 D------DPKGLVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIG 128 (239)
T ss_dssp S------CHHHHHHHHHHHHTSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred H------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEC
Confidence 4 22222 3479999999996532 2456788999999999999988431 1368999999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~iv 435 (851)
|..++.... +.+. ..|+.||+..|.+.+.++. ++++.++
T Consensus 129 S~~~~~~~~-------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v 172 (239)
T 2ekp_A 129 SVTTFTAGG-------PVPI-----------------------------PAYTTAKTALLGLTRALAKEWARLGIRVNLL 172 (239)
T ss_dssp CGGGTSCCT-------TSCC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred chhhccCCC-------CCCC-----------------------------ccHHHHHHHHHHHHHHHHHHhhhcCcEEEEE
Confidence 976543210 1122 3499999999998876543 8999999
Q ss_pred ecccccCCCC
Q psy11859 436 RPSIVLPSFQ 445 (851)
Q Consensus 436 Rp~~V~G~~~ 445 (851)
|||.|.++..
T Consensus 173 ~Pg~v~t~~~ 182 (239)
T 2ekp_A 173 CPGYVETEFT 182 (239)
T ss_dssp EECSBCSGGG
T ss_pred EeCCccCchh
Confidence 9999988753
|
| >2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.1e-16 Score=139.85 Aligned_cols=95 Identities=32% Similarity=0.517 Sum_probs=86.6
Q ss_pred cccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCCCCcccc
Q psy11859 712 TFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLL 791 (851)
Q Consensus 712 ~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~Cgk~f~~ 791 (851)
.....+++|.| +.|++.|.....|..|++.|+++++|.|. .|++.|.....|.+|++.|++++||.|+.|++.|..
T Consensus 10 ~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 85 (106)
T 2ee8_A 10 LPSKTKKEFIC--KFCGRHFTKSYNLLIHERTHTDERPYTCD--ICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQ 85 (106)
T ss_dssp CCCCCCCCCBC--SSSCCBCSSHHHHHHHHHHHCCSCCCBCS--SSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSS
T ss_pred CCcCCCcCeEC--CCCCCccCCHHHHHHHHHHcCCCCCcCCC--CccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccC
Confidence 34567899999 88999999999999999999999999998 899999999999999999999999999999997643
Q ss_pred ccccCCcccccCcccccccccCCCCCCccChHHHHHHHHhhcCCcchhh
Q psy11859 792 AILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVHERQKYKMM 840 (851)
Q Consensus 792 ~~~~~~H~~~C~k~f~~~~~~~~~~~pf~Ck~~L~~H~r~Htgek~~~C 840 (851)
+..|..|+++|++++||.+
T Consensus 86 ------------------------------~~~L~~H~~~H~~~~~~~~ 104 (106)
T 2ee8_A 86 ------------------------------SRTLAVHKTLHMQTSSPTA 104 (106)
T ss_dssp ------------------------------HHHHHHHHHHTTSCCCCCC
T ss_pred ------------------------------HHHHHHHHHHhCCCCCCcC
Confidence 3589999999999998864
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-15 Score=163.65 Aligned_cols=164 Identities=15% Similarity=0.120 Sum_probs=124.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||++++++|++.| .+|++++|... ++.++. ++ ...++.++.+|++
T Consensus 27 l~gk~vlVTGas~gIG~aia~~la~~G---~~V~~~~r~~~------~~~~~~---------~~---~~~~~~~~~~Dv~ 85 (277)
T 3gvc_A 27 LAGKVAIVTGAGAGIGLAVARRLADEG---CHVLCADIDGD------AADAAA---------TK---IGCGAAACRVDVS 85 (277)
T ss_dssp CTTCEEEETTTTSTHHHHHHHHHHHTT---CEEEEEESSHH------HHHHHH---------HH---HCSSCEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHHH---------HH---cCCcceEEEecCC
Confidence 689999999999999999999999998 78999988642 121111 00 1247889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+-.++|+
T Consensus 86 d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~ 159 (277)
T 3gvc_A 86 DEQ------QIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVN 159 (277)
T ss_dssp CHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 986 5555543 78999999997643 2456788999999999999988642 23568999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... ..+. ..|+.||+..|.+++.++. ++.+.
T Consensus 160 isS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~l~~~la~e~~~~gI~vn 201 (277)
T 3gvc_A 160 LSSLAGQVA---------VGGT-----------------------------GAYGMSKAGIIQLSRITAAELRSSGIRSN 201 (277)
T ss_dssp ECCGGGTSC---------CTTB-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred EcchhhccC---------CCCc-----------------------------hhHHHHHHHHHHHHHHHHHHhcccCeEEE
Confidence 999654321 1111 3499999999988876542 89999
Q ss_pred EEecccccCCC
Q psy11859 434 IVRPSIVLPSF 444 (851)
Q Consensus 434 ivRp~~V~G~~ 444 (851)
+++||.|.++.
T Consensus 202 ~v~PG~v~t~~ 212 (277)
T 3gvc_A 202 TLLPAFVDTPM 212 (277)
T ss_dssp EEEECSBCCHH
T ss_pred EEeeCCccCch
Confidence 99999998864
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.63 E-value=5.6e-16 Score=166.29 Aligned_cols=185 Identities=15% Similarity=0.116 Sum_probs=130.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCC------HHHHHHHHhcChhhHHHhhhCcccCCCeEE
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLT------PKARLAEFSKLPVFERLRKECPAQLSRLHI 289 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~------~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~ 289 (851)
++||+||||||+|+||++++++|++.| .+|++++|...... ..+++.+.. ..+ .....++.+
T Consensus 8 l~gk~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~ 75 (287)
T 3pxx_A 8 VQDKVVLVTGGARGQGRSHAVKLAEEG---ADIILFDICHDIETNEYPLATSRDLEEAG-----LEV----EKTGRKAYT 75 (287)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSCCTTSCSCCCCHHHHHHHH-----HHH----HHTTSCEEE
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC---CeEEEEcccccccccccchhhhHHHHHHH-----HHH----HhcCCceEE
Confidence 578999999999999999999999998 78999988743211 122222211 011 112358999
Q ss_pred EEcCCCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-----chhHHHHHHHHHHHHHHHHHHHHhc-CCceEE
Q psy11859 290 IEGDILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-----EAELKENVAANTRGTQRLLDIALKM-KKLVAF 356 (851)
Q Consensus 290 v~gDi~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-----~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~f 356 (851)
+.+|+++++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... ..-.++
T Consensus 76 ~~~D~~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~i 149 (287)
T 3pxx_A 76 AEVDVRDRA------AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASI 149 (287)
T ss_dssp EECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEE
T ss_pred EEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEE
Confidence 999999886 6655554 79999999997643 2567789999999999999999764 223589
Q ss_pred EEeeeeeeeCCC--cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C
Q psy11859 357 IHFSTAFCHPDQ--KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K 429 (851)
Q Consensus 357 V~vSTa~~~~~~--~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~ 429 (851)
|++||..+.... .+..|..... . ...|+.||+..+.+.+.++. +
T Consensus 150 v~isS~~~~~~~~~~~~~~~~~~~---~--------------------------~~~Y~asK~a~~~~~~~la~e~~~~g 200 (287)
T 3pxx_A 150 ITTGSVAGLIAAAQPPGAGGPQGP---G--------------------------GAGYSYAKQLVDSYTLQLAAQLAPQS 200 (287)
T ss_dssp EEECCHHHHHHHHCCC-----CHH---H--------------------------HHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred EEeccchhcccccccccccccCCC---c--------------------------cchHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999997554221 1111111000 0 13499999999998876543 8
Q ss_pred CCEEEEecccccCCCCCC
Q psy11859 430 LPVVIVRPSIVLPSFQEP 447 (851)
Q Consensus 430 l~~~ivRp~~V~G~~~~p 447 (851)
+.+.+++||.|..+....
T Consensus 201 i~vn~v~PG~v~T~~~~~ 218 (287)
T 3pxx_A 201 IRANVIHPTNVNTDMLNS 218 (287)
T ss_dssp CEEEEEEESSBSSTTTSS
T ss_pred cEEEEEecCccccccccc
Confidence 999999999999887654
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=160.57 Aligned_cols=165 Identities=16% Similarity=0.140 Sum_probs=121.9
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+|+||||||+|+||++++++|++.| .+|++++|... ++.++ .+.+.. ...++.++.+|++|+
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~------~~~~~-----~~~~~~----~~~~~~~~~~D~~~~ 63 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDG---FAVAIADYNDA------TAKAV-----ASEINQ----AGGHAVAVKVDVSDR 63 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHHH----TTCCEEEEECCTTSH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH-----HHHHHh----cCCcEEEEEecCCCH
Confidence 6899999999999999999999998 68999988642 11111 111111 123688999999987
Q ss_pred cCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CC-ceEEEEe
Q psy11859 298 NLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KK-LVAFIHF 359 (851)
Q Consensus 298 ~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~-~~~fV~v 359 (851)
+ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+ ..++|++
T Consensus 64 ~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~i 137 (256)
T 1geg_A 64 D------QVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINA 137 (256)
T ss_dssp H------HHHHHHHHHHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred H------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 6 6666654 79999999996532 2456788999999999998887653 12 4799999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..+... .|. ...|+.||+..|.+++.++. ++.+.+
T Consensus 138 sS~~~~~~----------~~~----------------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~ 179 (256)
T 1geg_A 138 CSQAGHVG----------NPE----------------------------LAVYSSSKFAVRGLTQTAARDLAPLGITVNG 179 (256)
T ss_dssp CCGGGTSC----------CTT----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred CchhhcCC----------CCC----------------------------chhHHHHHHHHHHHHHHHHHHHHHcCeEEEE
Confidence 99654321 111 13499999999988876542 899999
Q ss_pred EecccccCCC
Q psy11859 435 VRPSIVLPSF 444 (851)
Q Consensus 435 vRp~~V~G~~ 444 (851)
++||.|.++.
T Consensus 180 v~PG~v~t~~ 189 (256)
T 1geg_A 180 YCPGIVKTPM 189 (256)
T ss_dssp EEECSBSSHH
T ss_pred EEECCCccch
Confidence 9999998764
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=161.23 Aligned_cols=167 Identities=20% Similarity=0.188 Sum_probs=121.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|.... +.++ .+.+. ....++.++.+|++
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G---~~V~~~~r~~~~------~~~~-----~~~~~----~~~~~~~~~~~D~~ 88 (262)
T 3rkr_A 27 LSGQVAVVTGASRGIGAAIARKLGSLG---ARVVLTARDVEK------LRAV-----EREIV----AAGGEAESHACDLS 88 (262)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCHHH------HHHH-----HHHHH----HTTCEEEEEECCTT
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEECCHHH------HHHH-----HHHHH----HhCCceeEEEecCC
Confidence 578999999999999999999999998 689999886422 2111 11111 12347899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCC----c----chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLK----L----EAELKENVAANTRGTQRLLDIALKM---KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~----~----~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV 357 (851)
+++ ++..+++ .+|+|||+||... + .+.+...+++|+.|+.++++++... .+..++|
T Consensus 89 ~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv 162 (262)
T 3rkr_A 89 HSD------AIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHII 162 (262)
T ss_dssp CHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEE
Confidence 886 6555543 5899999999732 1 2456788999999999999987541 2357999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+... ..+. ..|+.||+..|.+++.++. ++++
T Consensus 163 ~isS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~l~~~la~e~~~~gi~v 204 (262)
T 3rkr_A 163 NISSLAGKNP---------VADG-----------------------------AAYTASKWGLNGLMTSAAEELRQHQVRV 204 (262)
T ss_dssp EECSSCSSCC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTCEE
T ss_pred EEechhhcCC---------CCCC-----------------------------chHHHHHHHHHHHHHHHHHHhhhcCcEE
Confidence 9999755321 1111 3499999999998876542 8999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
.+++||.|..+.
T Consensus 205 ~~v~PG~v~t~~ 216 (262)
T 3rkr_A 205 SLVAPGSVRTEF 216 (262)
T ss_dssp EEEEECCC----
T ss_pred EEEecCCCcCCc
Confidence 999999887653
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-15 Score=157.04 Aligned_cols=155 Identities=14% Similarity=0.113 Sum_probs=119.5
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++|+||||||+|+||++++++|++.| .+|++++|...... ..+.++.+|+++
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G---~~V~~~~r~~~~~~-------------------------~~~~~~~~D~~~ 53 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNG---YTVLNIDLSANDQA-------------------------DSNILVDGNKNW 53 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTT---EEEEEEESSCCTTS-------------------------SEEEECCTTSCH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEecCccccc-------------------------cccEEEeCCCCC
Confidence 57899999999999999999999998 78999999765321 135678899998
Q ss_pred CcCCCCHHHHHHHhc---------CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhcC-CceEEEE
Q psy11859 297 ANLGIKDSDLLMLQE---------EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKMK-KLVAFIH 358 (851)
Q Consensus 297 ~~lgls~~~~~~~~~---------~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~~-~~~~fV~ 358 (851)
++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++...- .-.++|+
T Consensus 54 ~~------~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~ 127 (236)
T 1ooe_A 54 TE------QEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQL 127 (236)
T ss_dssp HH------HHHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred HH------HHHHHHHHHHHHhCCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEE
Confidence 76 5554443 79999999996431 23466789999999999999987641 1258999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-------CCC
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-------KLP 431 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-------~l~ 431 (851)
+||..++.. ..+. ..|+.||+..|.+++.++. ++.
T Consensus 128 isS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~~~gi~ 169 (236)
T 1ooe_A 128 TGAAAAMGP---------TPSM-----------------------------IGYGMAKAAVHHLTSSLAAKDSGLPDNSA 169 (236)
T ss_dssp ECCGGGGSC---------CTTB-----------------------------HHHHHHHHHHHHHHHHHHSTTSSCCTTCE
T ss_pred ECchhhccC---------CCCc-----------------------------HHHHHHHHHHHHHHHHHHHHhcccCCCeE
Confidence 999755421 1111 3499999999999987653 488
Q ss_pred EEEEecccccCC
Q psy11859 432 VVIVRPSIVLPS 443 (851)
Q Consensus 432 ~~ivRp~~V~G~ 443 (851)
+.++|||.|.++
T Consensus 170 v~~v~Pg~v~t~ 181 (236)
T 1ooe_A 170 VLTIMPVTLDTP 181 (236)
T ss_dssp EEEEEESCBCCH
T ss_pred EEEEecCcccCc
Confidence 999999999876
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-15 Score=163.17 Aligned_cols=170 Identities=17% Similarity=0.229 Sum_probs=124.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||+++++.|++.| .+|++++|... ++.++ .+.+... .....++.++.+|++
T Consensus 24 l~~k~vlVTGas~gIG~aia~~L~~~G---~~V~~~~r~~~------~~~~~-----~~~l~~~-~~~~~~~~~~~~Dv~ 88 (297)
T 1xhl_A 24 FSGKSVIITGSSNGIGRSAAVIFAKEG---AQVTITGRNED------RLEET-----KQQILKA-GVPAEKINAVVADVT 88 (297)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHHHT-TCCGGGEEEEECCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH-----HHHHHhc-CCCCceEEEEecCCC
Confidence 578999999999999999999999998 68999998642 12111 1112111 000126889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCC-----c----chhHHHHHHHHHHHHHHHHHHHHhc---CCceEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLK-----L----EAELKENVAANTRGTQRLLDIALKM---KKLVAF 356 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~-----~----~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~f 356 (851)
+++ ++..+++ ++|+|||+||... + .+.++..+++|+.|+.++++++... .+ .++
T Consensus 89 d~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~I 161 (297)
T 1xhl_A 89 EAS------GQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEI 161 (297)
T ss_dssp SHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEE
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CEE
Confidence 886 6665554 7999999999643 2 2356788999999999999998753 12 689
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~ 431 (851)
|++||..+.... ..+. ..|+.||+..|.+.+.++ . +++
T Consensus 162 V~isS~~~~~~~--------~~~~-----------------------------~~Y~asKaa~~~l~~~la~el~~~gI~ 204 (297)
T 1xhl_A 162 VNVSSIVAGPQA--------HSGY-----------------------------PYYACAKAALDQYTRCTAIDLIQHGVR 204 (297)
T ss_dssp EEECCGGGSSSC--------CTTS-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred EEEcCchhccCC--------CCCc-----------------------------chHHHHHHHHHHHHHHHHHHhcccCeE
Confidence 999997554321 0111 349999999999887654 2 899
Q ss_pred EEEEecccccCCC
Q psy11859 432 VVIVRPSIVLPSF 444 (851)
Q Consensus 432 ~~ivRp~~V~G~~ 444 (851)
+.++|||.|.++.
T Consensus 205 v~~v~PG~v~T~~ 217 (297)
T 1xhl_A 205 VNSVSPGAVATGF 217 (297)
T ss_dssp EEEEEECCBCSSH
T ss_pred EEEEeeCCCcCcc
Confidence 9999999998874
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=159.13 Aligned_cols=168 Identities=17% Similarity=0.252 Sum_probs=121.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... +++.++ .+.+.. ...++.++.+|++
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G---~~V~~~~r~~~-----~~~~~~-----~~~~~~----~~~~~~~~~~D~~ 64 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQG---ANVVVNYAGNE-----QKANEV-----VDEIKK----LGSDAIAVRADVA 64 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCH-----HHHHHH-----HHHHHH----TTCCEEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCCH-----HHHHHH-----HHHHHh----cCCcEEEEEcCCC
Confidence 468999999999999999999999998 68889888421 112111 111211 1247889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh----cCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK----MKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~----~~~~~~fV 357 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++.+++.. . +..++|
T Consensus 65 ~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv 137 (246)
T 2uvd_A 65 NAE------DVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQ-RHGRIV 137 (246)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEE
Confidence 886 6666554 79999999997543 235678899999998877776643 3 368999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~ 432 (851)
++||..+... .|. ...|+.||+..+.+.+.++ . ++++
T Consensus 138 ~isS~~~~~~----------~~~----------------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v 179 (246)
T 2uvd_A 138 NIASVVGVTG----------NPG----------------------------QANYVAAKAGVIGLTKTSAKELASRNITV 179 (246)
T ss_dssp EECCTHHHHC----------CTT----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECCHHhcCC----------CCC----------------------------CchHHHHHHHHHHHHHHHHHHhhhcCeEE
Confidence 9999654321 111 1349999998888776543 2 8999
Q ss_pred EEEecccccCCCC
Q psy11859 433 VIVRPSIVLPSFQ 445 (851)
Q Consensus 433 ~ivRp~~V~G~~~ 445 (851)
.+++||.|.++..
T Consensus 180 ~~v~Pg~v~t~~~ 192 (246)
T 2uvd_A 180 NAIAPGFIATDMT 192 (246)
T ss_dssp EEEEECSBGGGCS
T ss_pred EEEEeccccCcch
Confidence 9999999987643
|
| >1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-16 Score=143.80 Aligned_cols=98 Identities=14% Similarity=0.102 Sum_probs=92.1
Q ss_pred CCCCceeeeeccceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccC
Q psy11859 679 IRSNRFWHYFFVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCK 758 (851)
Q Consensus 679 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~ 758 (851)
...++..|++.++|.|..|++.|.....|..|+++| .+||+| +.|++.|.....|..|++ |++++||.|. .|+
T Consensus 4 ~ss~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C--~~C~~~f~~~~~l~~H~~-H~~~~~~~C~--~C~ 76 (107)
T 1wjp_A 4 GSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVC--PYCSLRFFSPELKQEHES-KCEYKKLTCL--ECM 76 (107)
T ss_dssp CCCCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCC--TTTCCCBSSHHHHHHHHH-HCSTGGGEEG--GGT
T ss_pred ccccCcccCCCcCeECCCCCCccCCHHHHHHHHHHC--CCCccC--CCCCCccCCHHHHHHHHH-cCCCCCccCc--ccc
Confidence 456778899999999999999999999999999999 489999 889999999999999996 9999999998 899
Q ss_pred ccccCchhHHHhhh-hcCCCCCccCC
Q psy11859 759 WQFSRSDELSRHRR-SHFGIKPYPCT 783 (851)
Q Consensus 759 k~F~~~~~L~~H~r-~H~gekp~~C~ 783 (851)
+.|.+...|.+|++ .|++++||.|.
T Consensus 77 ~~f~~~~~L~~H~~~~H~~~~~~~~~ 102 (107)
T 1wjp_A 77 RTFKSSFSIWRHQVEVHNQNNMAPTS 102 (107)
T ss_dssp EECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred chhCCHHHHHHHHHHHcCCCCCCCCC
Confidence 99999999999997 99999999886
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=163.38 Aligned_cols=166 Identities=17% Similarity=0.194 Sum_probs=123.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||++++++|++.| .+|++++|.... +.++ .+.+.. ...++.++.+|++
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G---~~V~~~~r~~~~------~~~~-----~~~l~~----~~~~~~~~~~Dv~ 90 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRG---ARLVLSDVDQPA------LEQA-----VNGLRG----QGFDAHGVVCDVR 90 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH------HHHH-----HHHHHH----TTCCEEEEECCTT
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHH------HHHH-----HHHHHh----cCCceEEEEccCC
Confidence 688999999999999999999999998 689999986432 2111 111111 1347899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc----CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM----KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~~~~~fV 357 (851)
|++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++... +...++|
T Consensus 91 d~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv 164 (301)
T 3tjr_A 91 HLD------EMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIA 164 (301)
T ss_dssp CHH------HHHHHHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEE
T ss_pred CHH------HHHHHHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 986 6665554 79999999997542 2456788999999999999998542 2246899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~ 432 (851)
++||..+... .|. ...|+.||+..|.+.+.++ . ++.+
T Consensus 165 ~isS~~~~~~----------~~~----------------------------~~~Y~asKaa~~~~~~~la~e~~~~gi~v 206 (301)
T 3tjr_A 165 FTASFAGLVP----------NAG----------------------------LGTYGVAKYGVVGLAETLAREVKPNGIGV 206 (301)
T ss_dssp EECCGGGTSC----------CTT----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EeCchhhcCC----------CCC----------------------------chHHHHHHHHHHHHHHHHHHHhcccCcEE
Confidence 9999755321 111 1349999998888776654 2 8999
Q ss_pred EEEecccccCC
Q psy11859 433 VIVRPSIVLPS 443 (851)
Q Consensus 433 ~ivRp~~V~G~ 443 (851)
.+++||.|..+
T Consensus 207 ~~v~PG~v~T~ 217 (301)
T 3tjr_A 207 SVLCPMVVETK 217 (301)
T ss_dssp EEECCSCCCSS
T ss_pred EEEECCccccc
Confidence 99999998765
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=159.92 Aligned_cols=161 Identities=14% Similarity=0.203 Sum_probs=123.8
Q ss_pred hhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEE
Q psy11859 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIE 291 (851)
Q Consensus 212 i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~ 291 (851)
....++||+||||||+|+||++++++|++.| .+|++++|..... ...+..+.
T Consensus 8 ~~~~~~~k~vlVTGas~GIG~aia~~l~~~G---~~V~~~~r~~~~~-------------------------~~~~~~~~ 59 (269)
T 3vtz_A 8 HMEEFTDKVAIVTGGSSGIGLAVVDALVRYG---AKVVSVSLDEKSD-------------------------VNVSDHFK 59 (269)
T ss_dssp --CTTTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCC--C-------------------------TTSSEEEE
T ss_pred cccCCCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCchhc-------------------------cCceeEEE
Confidence 4456789999999999999999999999998 7899999876432 12567889
Q ss_pred cCCCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCce
Q psy11859 292 GDILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLV 354 (851)
Q Consensus 292 gDi~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~ 354 (851)
+|++|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..
T Consensus 60 ~Dv~~~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g 133 (269)
T 3vtz_A 60 IDVTNEE------EVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHG 133 (269)
T ss_dssp CCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE
T ss_pred ecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC
Confidence 9999886 6665554 79999999997543 2356678999999999999987642 1357
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----CC
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----KL 430 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----~l 430 (851)
++|++||..++.. ..+. ..|+.||+..|.+++.++. ++
T Consensus 134 ~iv~isS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~l~~~la~e~~~~i 175 (269)
T 3vtz_A 134 SIINIASVQSYAA---------TKNA-----------------------------AAYVTSKHALLGLTRSVAIDYAPKI 175 (269)
T ss_dssp EEEEECCGGGTSB---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred EEEEECchhhccC---------CCCC-----------------------------hhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999765432 1111 3499999999998876543 78
Q ss_pred CEEEEecccccCCC
Q psy11859 431 PVVIVRPSIVLPSF 444 (851)
Q Consensus 431 ~~~ivRp~~V~G~~ 444 (851)
.+.+++||.|.++.
T Consensus 176 ~vn~v~PG~v~T~~ 189 (269)
T 3vtz_A 176 RCNAVCPGTIMTPM 189 (269)
T ss_dssp EEEEEEECSBCCHH
T ss_pred EEEEEEECCCcCcc
Confidence 99999999998764
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=162.71 Aligned_cols=163 Identities=22% Similarity=0.269 Sum_probs=122.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.++ .++ ..++.++.+|++
T Consensus 7 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~------~~~~~---------~~~----~~~~~~~~~Dv~ 64 (270)
T 1yde_A 7 YAGKVVVVTGGGRGIGAGIVRAFVNSG---ARVVICDKDES------GGRAL---------EQE----LPGAVFILCDVT 64 (270)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH---------HHH----CTTEEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH---------HHH----hcCCeEEEcCCC
Confidence 578999999999999999999999998 68999988642 12111 111 124789999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhc--CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKM--KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~--~~~~~fV~ 358 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|+
T Consensus 65 d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~ 138 (270)
T 1yde_A 65 QED------DVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVIN 138 (270)
T ss_dssp SHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEE
Confidence 886 6665554 78999999997532 1346788999999999999998642 11478999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh-----CCCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK-----TKLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~-----~~l~~~ 433 (851)
+||..+... .|. ...|+.||+..|.+.+.++ .++++.
T Consensus 139 isS~~~~~~----------~~~----------------------------~~~Y~asKaa~~~~~~~la~e~~~~gi~vn 180 (270)
T 1yde_A 139 ISSLVGAIG----------QAQ----------------------------AVPYVATKGAVTAMTKALALDESPYGVRVN 180 (270)
T ss_dssp ECCHHHHHC----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred EcCccccCC----------CCC----------------------------CcccHHHHHHHHHHHHHHHHHhhhhCcEEE
Confidence 999643211 111 1249999999999887764 289999
Q ss_pred EEecccccCCC
Q psy11859 434 IVRPSIVLPSF 444 (851)
Q Consensus 434 ivRp~~V~G~~ 444 (851)
++|||.|+++.
T Consensus 181 ~v~Pg~v~t~~ 191 (270)
T 1yde_A 181 CISPGNIWTPL 191 (270)
T ss_dssp EEEECSBCCHH
T ss_pred EEEeCccccch
Confidence 99999999874
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-15 Score=160.43 Aligned_cols=168 Identities=18% Similarity=0.224 Sum_probs=123.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.++ .+.+. .. .++.++.+|++
T Consensus 27 l~~k~vlVTGas~gIG~aia~~L~~~G---~~V~~~~r~~~------~~~~~-----~~~l~----~~-~~~~~~~~Dv~ 87 (276)
T 2b4q_A 27 LAGRIALVTGGSRGIGQMIAQGLLEAG---ARVFICARDAE------ACADT-----ATRLS----AY-GDCQAIPADLS 87 (276)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEECSCHH------HHHHH-----HHHHT----TS-SCEEECCCCTT
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH-----HHHHH----hc-CceEEEEeeCC
Confidence 578999999999999999999999998 68999988642 12111 11111 11 26889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh----cC---Cce
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK----MK---KLV 354 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~----~~---~~~ 354 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++.. .+ +..
T Consensus 88 d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g 161 (276)
T 2b4q_A 88 SEA------GARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPA 161 (276)
T ss_dssp SHH------HHHHHHHHHHHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCE
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCC
Confidence 876 5655544 79999999996532 245778899999999988887753 22 127
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~ 429 (851)
++|++||..++... .+.. ..|+.||+..|.+++.++. +
T Consensus 162 ~iV~isS~~~~~~~---------~~~~----------------------------~~Y~asK~a~~~~~~~la~e~~~~g 204 (276)
T 2b4q_A 162 RVINIGSVAGISAM---------GEQA----------------------------YAYGPSKAALHQLSRMLAKELVGEH 204 (276)
T ss_dssp EEEEECCGGGTCCC---------CCSC----------------------------TTHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred EEEEECCHHHcCCC---------CCCc----------------------------cccHHHHHHHHHHHHHHHHHhcccC
Confidence 99999997654221 0111 1499999999998876642 8
Q ss_pred CCEEEEecccccCCCC
Q psy11859 430 LPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 430 l~~~ivRp~~V~G~~~ 445 (851)
+.+.+++||.|..+..
T Consensus 205 I~vn~v~PG~v~T~~~ 220 (276)
T 2b4q_A 205 INVNVIAPGRFPSRMT 220 (276)
T ss_dssp EEEEEEEECCCCSTTT
T ss_pred eEEEEEEeccCcCcch
Confidence 9999999999987753
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=162.48 Aligned_cols=213 Identities=15% Similarity=0.199 Sum_probs=144.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||++++++|++.| .+|++++|... ++.+. .+.++ ....++.++.+|++
T Consensus 24 l~gk~~lVTGas~gIG~aia~~la~~G---~~V~~~~r~~~------~~~~~-----~~~l~----~~~~~~~~~~~Dv~ 85 (271)
T 4ibo_A 24 LGGRTALVTGSSRGLGRAMAEGLAVAG---ARILINGTDPS------RVAQT-----VQEFR----NVGHDAEAVAFDVT 85 (271)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEECCSCHH------HHHHH-----HHHHH----HTTCCEEECCCCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH-----HHHHH----hcCCceEEEEcCCC
Confidence 689999999999999999999999998 68888887532 12111 11111 12347899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|+
T Consensus 86 d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~ 159 (271)
T 4ibo_A 86 SES------EIIEAFARLDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVN 159 (271)
T ss_dssp CHH------HHHHHHHHHHHHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHH------HHHHHHHHHHHHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 886 6666554 79999999997532 2456788999999999998887653 12468999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... ..+. ..|+.||+..+.+++.++. ++.+.
T Consensus 160 isS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~l~~~la~e~~~~gI~vn 201 (271)
T 4ibo_A 160 IGSLTSELA---------RATV-----------------------------APYTVAKGGIKMLTRAMAAEWAQYGIQAN 201 (271)
T ss_dssp ECCGGGTSB---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred EccHHhCCC---------CCCc-----------------------------hhHHHHHHHHHHHHHHHHHHHhhhCeEEE
Confidence 999644211 1112 3499999999998876543 89999
Q ss_pred EEecccccCCCCCCc---hhHhhhhcCCce-EEEEcccCceeEEEee--cC--CCCccEEEEeCC
Q psy11859 434 IVRPSIVLPSFQEPV---PGWVDSLNGPVG-VLVASGKGVVRSMILN--DL--STETQVFNISSN 490 (851)
Q Consensus 434 ivRp~~V~G~~~~p~---p~~i~~~~~~~~-~~~~~g~~v~~~~~~~--~~--~~~~~iyni~~~ 490 (851)
+++||.|..+..... +.+.+.+....+ --++...++++++... +. ...|+++++++|
T Consensus 202 ~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGG 266 (271)
T 4ibo_A 202 AIGPGYMLTDMNQALIDNPEFDAWVKARTPAKRWGKPQELVGTAVFLSASASDYVNGQIIYVDGG 266 (271)
T ss_dssp EEEECSBCSGGGHHHHHCHHHHHHHHHHSTTCSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EEEeccEeCcchhhcccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCcEEEECCC
Confidence 999999998754322 222222111111 0122345665554322 11 246889999888
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.4e-15 Score=159.23 Aligned_cols=170 Identities=19% Similarity=0.208 Sum_probs=125.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|.... .+.+.+ .+ .....++.++.+|++
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~---~~~~~~--------~l----~~~~~~~~~~~~Dv~ 87 (283)
T 3v8b_A 26 QPSPVALITGAGSGIGRATALALAADG---VTVGALGRTRTE---VEEVAD--------EI----VGAGGQAIALEADVS 87 (283)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESSHHH---HHHHHH--------HH----TTTTCCEEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHH--------HH----HhcCCcEEEEEccCC
Confidence 468999999999999999999999998 789999886422 111111 11 122347899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHH----hcCCceEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIAL----KMKKLVAF 356 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~f 356 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++. +. +..++
T Consensus 88 d~~------~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~I 160 (283)
T 3v8b_A 88 DEL------QMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQR-GGGAI 160 (283)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEE
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCceE
Confidence 986 6655544 79999999997532 24567889999999999999983 33 35799
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~ 431 (851)
|++||..+... .+.|. ...|+.||+..+.+++.++. ++.
T Consensus 161 v~isS~~~~~~--------~~~~~----------------------------~~~Y~asKaa~~~l~~~la~e~~~~gI~ 204 (283)
T 3v8b_A 161 VVVSSINGTRT--------FTTPG----------------------------ATAYTATKAAQVAIVQQLALELGKHHIR 204 (283)
T ss_dssp EEECCSBTTTB--------CCSTT----------------------------CHHHHHHHHHHHHHHHHHHHHTTTTTEE
T ss_pred EEEcChhhccC--------CCCCC----------------------------chHHHHHHHHHHHHHHHHHHHhCccCcE
Confidence 99999654321 01111 13499999999998877643 799
Q ss_pred EEEEecccccCCCCC
Q psy11859 432 VVIVRPSIVLPSFQE 446 (851)
Q Consensus 432 ~~ivRp~~V~G~~~~ 446 (851)
+.+|+||.|..+...
T Consensus 205 vn~v~PG~v~T~~~~ 219 (283)
T 3v8b_A 205 VNAVCPGAIETNISD 219 (283)
T ss_dssp EEEEEECSBSSCTTC
T ss_pred EEEEEeCCCcCCccc
Confidence 999999999877543
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-15 Score=161.98 Aligned_cols=164 Identities=17% Similarity=0.168 Sum_probs=123.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||+++++.|++.| .+|++++|... ++.++. ++ ...++.++.+|++
T Consensus 25 l~~k~vlVTGas~GIG~aia~~l~~~G---~~V~~~~r~~~------~~~~~~---------~~---~~~~~~~~~~Dv~ 83 (277)
T 4dqx_A 25 LNQRVCIVTGGGSGIGRATAELFAKNG---AYVVVADVNED------AAVRVA---------NE---IGSKAFGVRVDVS 83 (277)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSHH------HHHHHH---------HH---HCTTEEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHHH---------HH---hCCceEEEEecCC
Confidence 578999999999999999999999998 68999988642 221111 11 1247889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|+
T Consensus 84 d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~ 157 (277)
T 4dqx_A 84 SAK------DAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIIN 157 (277)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 986 6665554 79999999996532 2456788999999999999988542 13569999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... ..+. ..|+.||+..|.+++.++. ++.+.
T Consensus 158 isS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~l~~~la~e~~~~gi~vn 199 (277)
T 4dqx_A 158 TTSYTATSA---------IADR-----------------------------TAYVASKGAISSLTRAMAMDHAKEGIRVN 199 (277)
T ss_dssp ECCGGGTSC---------CTTB-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred ECchhhCcC---------CCCC-----------------------------hhHHHHHHHHHHHHHHHHHHhhhcCeEEE
Confidence 999655321 1111 3499999999988876543 89999
Q ss_pred EEecccccCCC
Q psy11859 434 IVRPSIVLPSF 444 (851)
Q Consensus 434 ivRp~~V~G~~ 444 (851)
+++||.|..+.
T Consensus 200 ~v~PG~v~T~~ 210 (277)
T 4dqx_A 200 AVAPGTIDSPY 210 (277)
T ss_dssp EEEECSBCCHH
T ss_pred EEeeCcCcCch
Confidence 99999998763
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=160.55 Aligned_cols=170 Identities=17% Similarity=0.178 Sum_probs=121.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||++++++|++.| .+|+++.+.... ..+... +.+. ....++.++.+|++
T Consensus 6 l~~k~vlVTGas~GIG~aia~~la~~G---~~V~~~~~~~~~--~~~~~~--------~~~~----~~~~~~~~~~~Dv~ 68 (259)
T 3edm_A 6 FTNRTIVVAGAGRDIGRACAIRFAQEG---ANVVLTYNGAAE--GAATAV--------AEIE----KLGRSALAIKADLT 68 (259)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECSSCH--HHHHHH--------HHHH----TTTSCCEEEECCTT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCCCHH--HHHHHH--------HHHH----hcCCceEEEEcCCC
Confidence 578999999999999999999999998 678887554322 111111 1111 12347889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEe
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKMK-KLVAFIHF 359 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~~-~~~~fV~v 359 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++...- .-.++|++
T Consensus 69 ~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~i 142 (259)
T 3edm_A 69 NAA------EVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTF 142 (259)
T ss_dssp CHH------HHHHHHHHHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 986 6666554 78999999986521 23567889999999999999997642 12389999
Q ss_pred eeeeee-CCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----CCCEEE
Q psy11859 360 STAFCH-PDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----KLPVVI 434 (851)
Q Consensus 360 STa~~~-~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----~l~~~i 434 (851)
||..+. .. ..+. ..|+.||+..+.+.+.++. ++.+..
T Consensus 143 sS~~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~l~~~la~e~~~~I~vn~ 184 (259)
T 3edm_A 143 SSQAGRDGG---------GPGA-----------------------------LAYATSKGAVMTFTRGLAKEVGPKIRVNA 184 (259)
T ss_dssp CCHHHHHCC---------STTC-----------------------------HHHHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred cCHHhccCC---------CCCc-----------------------------HHHHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 997553 11 1111 3499999999998876643 589999
Q ss_pred EecccccCCCCC
Q psy11859 435 VRPSIVLPSFQE 446 (851)
Q Consensus 435 vRp~~V~G~~~~ 446 (851)
+.||.|..+...
T Consensus 185 v~PG~v~T~~~~ 196 (259)
T 3edm_A 185 VCPGMISTTFHD 196 (259)
T ss_dssp EEECCBCC----
T ss_pred EEECCCcCcccc
Confidence 999999877543
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-15 Score=156.16 Aligned_cols=156 Identities=20% Similarity=0.213 Sum_probs=117.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|..... ..+..+.+|++
T Consensus 13 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~--------------------------~~~~~~~~D~~ 63 (247)
T 1uzm_A 13 FVSRSVLVTGGNRGIGLAIAQRLAADG---HKVAVTHRGSGAP--------------------------KGLFGVEVDVT 63 (247)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSSCCC--------------------------TTSEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCChHHH--------------------------HHhcCeeccCC
Confidence 578999999999999999999999998 7899999975432 12224889999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|+
T Consensus 64 ~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~ 137 (247)
T 1uzm_A 64 DSD------AVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIF 137 (247)
T ss_dssp CHH------HHHHHHHHHHHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 876 5555543 68999999997542 2456788999999999999988642 23689999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ 433 (851)
+||..+... .|. ...|+.||+..|.+++.++ . ++.+.
T Consensus 138 isS~~~~~~----------~~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~ 179 (247)
T 1uzm_A 138 IGSVSGLWG----------IGN----------------------------QANYAASKAGVIGMARSIARELSKANVTAN 179 (247)
T ss_dssp ECCCCC---------------C----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred ECCHhhccC----------CCC----------------------------ChhHHHHHHHHHHHHHHHHHHhhhcCcEEE
Confidence 999654321 111 1349999998888776653 2 89999
Q ss_pred EEecccccCCC
Q psy11859 434 IVRPSIVLPSF 444 (851)
Q Consensus 434 ivRp~~V~G~~ 444 (851)
+++||.|.++.
T Consensus 180 ~v~PG~v~t~~ 190 (247)
T 1uzm_A 180 VVAPGYIDTDM 190 (247)
T ss_dssp EEEECSBCCHH
T ss_pred EEEeCCCcccc
Confidence 99999997653
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-15 Score=159.07 Aligned_cols=168 Identities=10% Similarity=0.061 Sum_probs=125.0
Q ss_pred cCCCEEEEecCc--cHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 216 YAGRSVLVTGGT--GFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 216 ~~~k~VlVTGat--GFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
+++|+||||||+ |+||+++++.|++.| .+|++++|... ..+.++++ .+.. .++.++.+|
T Consensus 4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G---~~V~~~~r~~~---~~~~~~~l---------~~~~----~~~~~~~~D 64 (275)
T 2pd4_A 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQG---ATLAFTYLNES---LEKRVRPI---------AQEL----NSPYVYELD 64 (275)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTT---CEEEEEESSTT---THHHHHHH---------HHHT----TCCCEEECC
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCC---CEEEEEeCCHH---HHHHHHHH---------HHhc----CCcEEEEcC
Confidence 568999999999 999999999999998 78999999764 12222222 1111 236789999
Q ss_pred CCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-----------chhHHHHHHHHHHHHHHHHHHHHhcC-Cce
Q psy11859 294 ILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-----------EAELKENVAANTRGTQRLLDIALKMK-KLV 354 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-----------~~~~~~~~~~Nv~Gt~~ll~~a~~~~-~~~ 354 (851)
+++++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++...- .-.
T Consensus 65 ~~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g 138 (275)
T 2pd4_A 65 VSKEE------HFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGA 138 (275)
T ss_dssp TTCHH------HHHHHHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCC
Confidence 99876 5655544 68999999997542 23567889999999999999997641 125
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~ 429 (851)
++|++||..+... ..+. ..|+.||+..+.+++.++. +
T Consensus 139 ~iv~isS~~~~~~---------~~~~-----------------------------~~Y~asK~a~~~~~~~la~e~~~~g 180 (275)
T 2pd4_A 139 SVLTLSYLGSTKY---------MAHY-----------------------------NVMGLAKAALESAVRYLAVDLGKHH 180 (275)
T ss_dssp EEEEEECGGGTSB---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEEEecchhcCC---------CCCc-----------------------------hhhHHHHHHHHHHHHHHHHHhhhcC
Confidence 8999999654321 1111 3499999999998876542 8
Q ss_pred CCEEEEecccccCCCCC
Q psy11859 430 LPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 430 l~~~ivRp~~V~G~~~~ 446 (851)
+.+.+++||.|.++...
T Consensus 181 i~v~~v~PG~v~T~~~~ 197 (275)
T 2pd4_A 181 IRVNALSAGPIRTLASS 197 (275)
T ss_dssp CEEEEEEECCCCCTTGG
T ss_pred eEEEEEeeCccccchhh
Confidence 99999999999987543
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=160.96 Aligned_cols=163 Identities=17% Similarity=0.177 Sum_probs=121.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.++. +.+ ..++.++.+|++
T Consensus 4 l~~k~vlVTGas~giG~~ia~~l~~~G---~~V~~~~r~~~------~~~~~~-----~~~-------~~~~~~~~~D~~ 62 (253)
T 1hxh_A 4 LQGKVALVTGGASGVGLEVVKLLLGEG---AKVAFSDINEA------AGQQLA-----AEL-------GERSMFVRHDVS 62 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEECSCHH------HHHHHH-----HHH-------CTTEEEECCCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHHH-----HHc-------CCceEEEEccCC
Confidence 578999999999999999999999998 68999888632 222111 111 237889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++.+++... .+ .++|+
T Consensus 63 ~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g~iv~ 135 (253)
T 1hxh_A 63 SEA------DWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIIN 135 (253)
T ss_dssp CHH------HHHHHHHHHHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-CEEEE
Confidence 876 5555543 57999999997543 2456788999999988877765431 23 89999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-------CCC
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-------KLP 431 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-------~l~ 431 (851)
+||..++... .+. ..|+.||+..|.+++.++. +++
T Consensus 136 isS~~~~~~~---------~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~~~gi~ 177 (253)
T 1hxh_A 136 MASVSSWLPI---------EQY-----------------------------AGYSASKAAVSALTRAAALSCRKQGYAIR 177 (253)
T ss_dssp ECCGGGTSCC---------TTB-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred EcchhhcCCC---------CCC-----------------------------ccHHHHHHHHHHHHHHHHHHhhhcCCCeE
Confidence 9997654311 111 2499999999998877642 799
Q ss_pred EEEEecccccCCC
Q psy11859 432 VVIVRPSIVLPSF 444 (851)
Q Consensus 432 ~~ivRp~~V~G~~ 444 (851)
+.++|||.|+++.
T Consensus 178 v~~v~Pg~v~t~~ 190 (253)
T 1hxh_A 178 VNSIHPDGIYTPM 190 (253)
T ss_dssp EEEEEESEECCHH
T ss_pred EEEEEeCCccCch
Confidence 9999999999874
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-15 Score=160.38 Aligned_cols=168 Identities=15% Similarity=0.137 Sum_probs=121.8
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
..++|+||||||+|+||+++++.|++.| .+|++++|... ++.+. .+.++ ....++.++.+|+
T Consensus 21 m~~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~------~~~~~-----~~~l~----~~~~~~~~~~~Dv 82 (279)
T 3sju_A 21 MSRPQTAFVTGVSSGIGLAVARTLAARG---IAVYGCARDAK------NVSAA-----VDGLR----AAGHDVDGSSCDV 82 (279)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHH----TTTCCEEEEECCT
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH-----HHHHH----hcCCcEEEEECCC
Confidence 3578999999999999999999999998 68999998642 12111 11121 1234789999999
Q ss_pred CCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc-----CCceE
Q psy11859 295 LQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM-----KKLVA 355 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~-----~~~~~ 355 (851)
+|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..+
T Consensus 83 ~d~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~ 156 (279)
T 3sju_A 83 TSTD------EVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGR 156 (279)
T ss_dssp TCHH------HHHHHHHHHHHHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcE
Confidence 9886 6555543 78999999997642 2456788999999999999988651 13579
Q ss_pred EEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CC
Q psy11859 356 FIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KL 430 (851)
Q Consensus 356 fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l 430 (851)
+|++||..+... .|. ...|+.||+..+.+++.++. ++
T Consensus 157 iV~isS~~~~~~----------~~~----------------------------~~~Y~asKaa~~~l~~~la~e~~~~gi 198 (279)
T 3sju_A 157 IVNIASTGGKQG----------VMY----------------------------AAPYTASKHGVVGFTKSVGFELAKTGI 198 (279)
T ss_dssp EEEECCGGGTSC----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHTGGGTE
T ss_pred EEEECChhhccC----------CCC----------------------------ChhHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 999999655321 111 13499999988888766542 89
Q ss_pred CEEEEecccccCCC
Q psy11859 431 PVVIVRPSIVLPSF 444 (851)
Q Consensus 431 ~~~ivRp~~V~G~~ 444 (851)
.+.+++||.|.++.
T Consensus 199 ~vn~v~PG~v~T~~ 212 (279)
T 3sju_A 199 TVNAVCPGYVETPM 212 (279)
T ss_dssp EEEEEEESSBCSHH
T ss_pred EEEEEeeCcccchH
Confidence 99999999998763
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-15 Score=158.91 Aligned_cols=166 Identities=15% Similarity=0.224 Sum_probs=121.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.++ .+.+.. ...++.++.+|++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~------~~~~~-----~~~~~~----~~~~~~~~~~D~~ 66 (262)
T 1zem_A 5 FNGKVCLVTGAGGNIGLATALRLAEEG---TAIALLDMNRE------ALEKA-----EASVRE----KGVEARSYVCDVT 66 (262)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHHT----TTSCEEEEECCTT
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH-----HHHHHh----cCCcEEEEEecCC
Confidence 578999999999999999999999998 68999988642 12111 111111 1236889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccC-C---c----chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASL-K---L----EAELKENVAANTRGTQRLLDIALKM---KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~-~---~----~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV 357 (851)
+++ ++..+++ ++|+|||+||.. . + .+.++..+++|+.|+.++++++... .+..++|
T Consensus 67 ~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv 140 (262)
T 1zem_A 67 SEE------AVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIV 140 (262)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 876 5555443 799999999965 2 1 2456788999999999999988653 1357999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~ 432 (851)
++||..+... .|. ...|+.||+..+.+.+.++ . ++.+
T Consensus 141 ~isS~~~~~~----------~~~----------------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v 182 (262)
T 1zem_A 141 NTASMAGVKG----------PPN----------------------------MAAYGTSKGAIIALTETAALDLAPYNIRV 182 (262)
T ss_dssp EECCHHHHSC----------CTT----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEcchhhccC----------CCC----------------------------CchHHHHHHHHHHHHHHHHHHHHhhCeEE
Confidence 9999755321 111 1249999988887776553 3 8999
Q ss_pred EEEecccccCC
Q psy11859 433 VIVRPSIVLPS 443 (851)
Q Consensus 433 ~ivRp~~V~G~ 443 (851)
.+|+||.|..+
T Consensus 183 n~v~PG~v~t~ 193 (262)
T 1zem_A 183 NAISPGYMGPG 193 (262)
T ss_dssp EEEEECSBCSS
T ss_pred EEEecCCcCcc
Confidence 99999988655
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=159.71 Aligned_cols=155 Identities=20% Similarity=0.248 Sum_probs=119.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||++++++|++.| .+|++++|...... ....+.+|++
T Consensus 26 l~gk~vlVTGas~gIG~aia~~la~~G---~~V~~~~r~~~~~~--------------------------~~~~~~~Dv~ 76 (266)
T 3uxy_A 26 FEGKVALVTGAAGGIGGAVVTALRAAG---ARVAVADRAVAGIA--------------------------ADLHLPGDLR 76 (266)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEECSSCCTTSC--------------------------CSEECCCCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHH--------------------------hhhccCcCCC
Confidence 578999999999999999999999998 78999888654321 2234578999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHH----hcCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIAL----KMKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV 357 (851)
+++ +...++ .++|+|||+||.... .+.++..+++|+.|+.++++++. +. +..++|
T Consensus 77 ~~~------~~~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv 149 (266)
T 3uxy_A 77 EAA------YADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAA-GGGAIV 149 (266)
T ss_dssp SHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEE
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEE
Confidence 876 444443 379999999997653 24567889999999999999983 33 367999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+... ..+. ..|+.||+..|.+++.++. ++.+
T Consensus 150 ~isS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~l~~~la~e~~~~gI~v 191 (266)
T 3uxy_A 150 NVASCWGLRP---------GPGH-----------------------------ALYCLTKAALASLTQCMGMDHAPQGIRI 191 (266)
T ss_dssp EECCSBTTBC---------CTTB-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECCHHhCCC---------CCCC-----------------------------hHHHHHHHHHHHHHHHHHHHhhhcCcEE
Confidence 9999755321 1111 3499999999998876643 8999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
.+++||.|.++.
T Consensus 192 n~v~PG~v~T~~ 203 (266)
T 3uxy_A 192 NAVCPNEVNTPM 203 (266)
T ss_dssp EEEEESSBCCHH
T ss_pred EEEeeCCCcchH
Confidence 999999998864
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-15 Score=162.85 Aligned_cols=171 Identities=13% Similarity=0.146 Sum_probs=123.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|+++.|.... ...+. ...+ .....++.++.+|++
T Consensus 23 ~~~k~vlITGas~gIG~~~a~~l~~~G---~~v~~~~~~~~~-----~~~~~-----~~~~----~~~~~~~~~~~~Dl~ 85 (269)
T 3gk3_A 23 QAKRVAFVTGGMGGLGAAISRRLHDAG---MAVAVSHSERND-----HVSTW-----LMHE----RDAGRDFKAYAVDVA 85 (269)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHTTT---CEEEEEECSCHH-----HHHHH-----HHHH----HTTTCCCEEEECCTT
T ss_pred hcCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCCchH-----HHHHH-----HHHH----HhcCCceEEEEecCC
Confidence 678999999999999999999999998 678888754321 11111 0011 112347899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|+
T Consensus 86 ~~~------~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~ 159 (269)
T 3gk3_A 86 DFE------SCERCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVN 159 (269)
T ss_dssp CHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 886 6655544 79999999997543 2456788999999999999988541 23578999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ 433 (851)
+||..+... ..+. ..|+.||+..+.+++.++ . ++.+.
T Consensus 160 isS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~~~~~la~e~~~~gi~v~ 201 (269)
T 3gk3_A 160 IGSVNGSRG---------AFGQ-----------------------------ANYASAKAGIHGFTKTLALETAKRGITVN 201 (269)
T ss_dssp ECCHHHHHC---------CTTB-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred eCChhhccC---------CCCc-----------------------------chHHHHHHHHHHHHHHHHHHhhhcCCEEE
Confidence 999654321 1111 349999998888776553 2 89999
Q ss_pred EEecccccCCCCCC
Q psy11859 434 IVRPSIVLPSFQEP 447 (851)
Q Consensus 434 ivRp~~V~G~~~~p 447 (851)
+++||.|..+....
T Consensus 202 ~v~PG~v~T~~~~~ 215 (269)
T 3gk3_A 202 TVSPGYLATAMVEA 215 (269)
T ss_dssp EEEECSBCCTTTTC
T ss_pred EEecCcccchhhhh
Confidence 99999998876543
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-15 Score=162.13 Aligned_cols=214 Identities=16% Similarity=0.129 Sum_probs=144.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||+++++.|++.| .+|++++|... ++.++. +.+ .....++.++.+|++
T Consensus 6 l~gk~vlVTGas~GIG~aia~~la~~G---~~V~~~~r~~~------~~~~~~-----~~~----~~~~~~~~~~~~Dv~ 67 (280)
T 3tox_A 6 LEGKIAIVTGASSGIGRAAALLFAREG---AKVVVTARNGN------ALAELT-----DEI----AGGGGEAAALAGDVG 67 (280)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEECCSCHH------HHHHHH-----HHH----TTTTCCEEECCCCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHHH-----HHH----HhcCCcEEEEECCCC
Confidence 578999999999999999999999998 68899888642 221111 111 122357899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKM---KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV 357 (851)
+++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+-.++|
T Consensus 68 ~~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv 141 (280)
T 3tox_A 68 DEA------LHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLT 141 (280)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEE
Confidence 986 6665554 79999999996532 2456788999999999999988643 1246899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..++.. ...+. ..|+.||+..+.+++.++. ++.+
T Consensus 142 ~isS~~~~~~--------~~~~~-----------------------------~~Y~asKaa~~~l~~~la~e~~~~gIrv 184 (280)
T 3tox_A 142 FTSSFVGHTA--------GFAGV-----------------------------APYAASKAGLIGLVQALAVELGARGIRV 184 (280)
T ss_dssp EECCSBTTTB--------CCTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHHTTTEEE
T ss_pred EEcChhhCcC--------CCCCc-----------------------------hhHHHHHHHHHHHHHHHHHHhhhcCeEE
Confidence 9999655311 01112 3499999999988876543 8999
Q ss_pred EEEecccccCCCCCC-----chhHhhhhcCCceE-EEEcccCceeEEEeecC----CCCccEEEEeCC
Q psy11859 433 VIVRPSIVLPSFQEP-----VPGWVDSLNGPVGV-LVASGKGVVRSMILNDL----STETQVFNISSN 490 (851)
Q Consensus 433 ~ivRp~~V~G~~~~p-----~p~~i~~~~~~~~~-~~~~g~~v~~~~~~~~~----~~~~~iyni~~~ 490 (851)
.+|+||.|.++.... .+.....+....+. -++...++++++..... ...|+++++++|
T Consensus 185 n~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG 252 (280)
T 3tox_A 185 NALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPEEIAEAALYLASDGASFVTGAALLADGG 252 (280)
T ss_dssp EEEEECSBSSTTSGGGSTTCCTHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EEEEECCCCCchhhhhccccCHHHHHHHhccCccCCCcCHHHHHHHHHHHhCccccCCcCcEEEECCC
Confidence 999999999875422 22222222221111 11223455544332221 246889999888
|
| >1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-16 Score=142.92 Aligned_cols=97 Identities=15% Similarity=0.237 Sum_probs=87.7
Q ss_pred hhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCCCC
Q psy11859 708 IRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVK 787 (851)
Q Consensus 708 ~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~Cgk 787 (851)
..++++|++++||+| +.|++.|.....|..|+++| ++||.|. .|++.|.....|..|++ |++++||.|+.|++
T Consensus 5 ss~~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~H--~~~~~C~--~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~ 77 (107)
T 1wjp_A 5 SSGASPVENKEVYQC--RLCNAKLSSLLEQGSHERLC--RNAAVCP--YCSLRFFSPELKQEHES-KCEYKKLTCLECMR 77 (107)
T ss_dssp CCCCCCCCCCCCCBC--TTTCCBCSSHHHHHHHHHHH--HHSBCCT--TTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTE
T ss_pred cccCcccCCCcCeEC--CCCCCccCCHHHHHHHHHHC--CCCccCC--CCCCccCCHHHHHHHHH-cCCCCCccCccccc
Confidence 357889999999999 88999999999999999999 4799998 89999999999999996 99999999999988
Q ss_pred ccccccccCCcccccCcccccccccCCCCCCccChHHHHHHHH-hhcCCcchhhh
Q psy11859 788 KSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLK-VHERQKYKMMM 841 (851)
Q Consensus 788 ~f~~~~~~~~H~~~C~k~f~~~~~~~~~~~pf~Ck~~L~~H~r-~Htgek~~~C~ 841 (851)
.|.. +..|..|++ +|++++||.|.
T Consensus 78 ~f~~------------------------------~~~L~~H~~~~H~~~~~~~~~ 102 (107)
T 1wjp_A 78 TFKS------------------------------SFSIWRHQVEVHNQNNMAPTS 102 (107)
T ss_dssp ECSS------------------------------HHHHHHHHHHTSCCCCCCCCC
T ss_pred hhCC------------------------------HHHHHHHHHHHcCCCCCCCCC
Confidence 6643 358999997 99999999875
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=158.94 Aligned_cols=212 Identities=16% Similarity=0.115 Sum_probs=140.5
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEE-ecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYIL-CRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l-~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++|+||||||+|+||++++++|++.| .+|+++ .|.... .+.+.+ .+. ....++.++.+|++
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G---~~vv~~~~r~~~~---~~~~~~--------~~~----~~~~~~~~~~~Dv~ 64 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENG---YNIVINYARSKKA---ALETAE--------EIE----KLGVKVLVVKANVG 64 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESSCHHH---HHHHHH--------HHH----TTTCCEEEEECCTT
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCC---CEEEEEcCCCHHH---HHHHHH--------HHH----hcCCcEEEEEcCCC
Confidence 58999999999999999999999998 677776 564321 111111 111 12347899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|+
T Consensus 65 ~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~ 138 (258)
T 3oid_A 65 QPA------KIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVS 138 (258)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 986 6665543 67999999986432 2356678999999999999998532 13579999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... ..+. ..|+.||+..+.+++.++. ++.+.
T Consensus 139 isS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~l~~~la~e~~~~gi~vn 180 (258)
T 3oid_A 139 ISSLGSIRY---------LENY-----------------------------TTVGVSKAALEALTRYLAVELSPKQIIVN 180 (258)
T ss_dssp EEEGGGTSB---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHTGGGTEEEE
T ss_pred ECchhhCCC---------CCCc-----------------------------HHHHHHHHHHHHHHHHHHHHHhhcCcEEE
Confidence 999654321 1112 3499999999999877643 79999
Q ss_pred EEecccccCCCCCCch---hHhhhhcCCceE-EEEcccCceeEEEeecC----CCCccEEEEeCC
Q psy11859 434 IVRPSIVLPSFQEPVP---GWVDSLNGPVGV-LVASGKGVVRSMILNDL----STETQVFNISSN 490 (851)
Q Consensus 434 ivRp~~V~G~~~~p~p---~~i~~~~~~~~~-~~~~g~~v~~~~~~~~~----~~~~~iyni~~~ 490 (851)
+++||.|..+.....+ .+.+.+....+. -++...++++++..... ...|+++++++|
T Consensus 181 ~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdGG 245 (258)
T 3oid_A 181 AVSGGAIDTDALKHFPNREDLLEDARQNTPAGRMVEIKDMVDTVEFLVSSKADMIRGQTIIVDGG 245 (258)
T ss_dssp EEEECCBCSGGGGGCTTHHHHHHHHHHHCTTSSCBCHHHHHHHHHHHTSSTTTTCCSCEEEESTT
T ss_pred EEeeCCCcChhhhhcccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCcccCCccCCEEEECCC
Confidence 9999999887543322 222221111110 01223455554432222 235889999888
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-15 Score=158.76 Aligned_cols=162 Identities=17% Similarity=0.213 Sum_probs=122.1
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
.-+++|+||||||+|+||+++++.|++.| .+|++++|.. ++++++ ...++.++.+|
T Consensus 12 ~~~~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~------~~~~~~---------------~~~~~~~~~~D 67 (266)
T 3p19_A 12 RGSMKKLVVITGASSGIGEAIARRFSEEG---HPLLLLARRV------ERLKAL---------------NLPNTLCAQVD 67 (266)
T ss_dssp ---CCCEEEEESTTSHHHHHHHHHHHHTT---CCEEEEESCH------HHHHTT---------------CCTTEEEEECC
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCH------HHHHHh---------------hcCCceEEEec
Confidence 34678999999999999999999999998 6788888853 222111 12378899999
Q ss_pred CCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHH----hcCCceE
Q psy11859 294 ILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIAL----KMKKLVA 355 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~ 355 (851)
++|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++. +. +..+
T Consensus 68 v~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~ 140 (266)
T 3p19_A 68 VTDKY------TFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKAR-NCGT 140 (266)
T ss_dssp TTCHH------HHHHHHHHHHHHHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCE
T ss_pred CCCHH------HHHHHHHHHHHHCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcE
Confidence 99876 6665554 79999999997542 24567889999999999888775 33 3579
Q ss_pred EEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CC
Q psy11859 356 FIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KL 430 (851)
Q Consensus 356 fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l 430 (851)
+|++||..+... .|. ...|+.||+..+.+.+.++. ++
T Consensus 141 IV~isS~~~~~~----------~~~----------------------------~~~Y~asK~a~~~~~~~la~e~~~~gi 182 (266)
T 3p19_A 141 IINISSIAGKKT----------FPD----------------------------HAAYCGTKFAVHAISENVREEVAASNV 182 (266)
T ss_dssp EEEECCGGGTSC----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred EEEEcChhhCCC----------CCC----------------------------CchHHHHHHHHHHHHHHHHHHhcccCc
Confidence 999999765421 111 13499999999988876543 89
Q ss_pred CEEEEecccccCCC
Q psy11859 431 PVVIVRPSIVLPSF 444 (851)
Q Consensus 431 ~~~ivRp~~V~G~~ 444 (851)
.+.+++||.|.++.
T Consensus 183 ~vn~v~PG~v~T~~ 196 (266)
T 3p19_A 183 RVMTIAPSAVKTEL 196 (266)
T ss_dssp EEEEEEECSBSSSG
T ss_pred EEEEEeeCccccch
Confidence 99999999998874
|
| >2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-16 Score=146.14 Aligned_cols=106 Identities=11% Similarity=-0.010 Sum_probs=96.7
Q ss_pred CCCCCCCceeeeeccceeecCCccccchhhhhhhcccc--cCCccccc-ccCCccCccc--cChhhHHHHHhhhcCCCcc
Q psy11859 676 NGQIRSNRFWHYFFVIFTQILPAYLVDFIMVLIRQKTF--ENLVRTFQ-CTYPECLKFY--AKMSHLKAHLRRHSGERSF 750 (851)
Q Consensus 676 ~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~--h~~~r~~~-C~~~~Cgk~F--~~~~~L~~H~~~H~gekp~ 750 (851)
.+.|..|+..|++.+||.|+.|++.|.....|..|+++ |.+.+++. | +.|++.| .....|..|+++|++++||
T Consensus 4 ~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C--~~C~~~f~f~~~~~l~~H~~~H~~~~~~ 81 (115)
T 2dmi_A 4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETD--NNNPKRWSKPRKRSLLEMEGKEDAQKVL 81 (115)
T ss_dssp CCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCC--CCCCSCCSSCCCCCCCCCCCSCCCCSSC
T ss_pred chhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccC--CCCCcccccccHHHHHHHhhccCCCcce
Confidence 46799999999999999999999999999999999998 88888765 9 8999999 9999999999999999999
Q ss_pred ccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 751 KCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 751 ~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
.|+ .|++.|.+...|.+|++.|+......++.+
T Consensus 82 ~C~--~C~k~f~~~~~L~~H~~~hh~~~~~~~~~s 114 (115)
T 2dmi_A 82 KCM--YCGHSFESLQDLSVHMIKTKHYQKVSGPSS 114 (115)
T ss_dssp BCS--SSCCBCSSHHHHHHHHHHTTTTTCSCCCCC
T ss_pred ECC--CCCCccCCHHHHHHHHHHhCCcccCCCCCC
Confidence 998 899999999999999999887766655543
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.61 E-value=4e-15 Score=157.88 Aligned_cols=168 Identities=20% Similarity=0.204 Sum_probs=124.6
Q ss_pred cCCCEEEEecCccH-HHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 216 YAGRSVLVTGGTGF-MGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 216 ~~~k~VlVTGatGF-IG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
+++|+||||||+|+ ||++++++|++.| .+|++++|.... +.+. .+.+.+. ...++.++.+|+
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G---~~V~~~~r~~~~------~~~~-----~~~l~~~---~~~~~~~~~~Dl 82 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEG---ADVVISDYHERR------LGET-----RDQLADL---GLGRVEAVVCDV 82 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTT---CEEEEEESCHHH------HHHH-----HHHHHTT---CSSCEEEEECCT
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCC---CEEEEecCCHHH------HHHH-----HHHHHhc---CCCceEEEEeCC
Confidence 67899999999997 9999999999998 689999886432 2111 1112111 124899999999
Q ss_pred CCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc----CCceEE
Q psy11859 295 LQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM----KKLVAF 356 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~~~~~f 356 (851)
+|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... +...++
T Consensus 83 ~~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i 156 (266)
T 3o38_A 83 TSTE------AVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVI 156 (266)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEE
Confidence 9886 6665543 68999999997542 2356788999999999999998754 235789
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~ 431 (851)
|++||..+... ..+. ..|+.||+..|.+++.++. ++.
T Consensus 157 v~~sS~~~~~~---------~~~~-----------------------------~~Y~~sKaa~~~~~~~la~e~~~~gi~ 198 (266)
T 3o38_A 157 VNNASVLGWRA---------QHSQ-----------------------------SHYAAAKAGVMALTRCSAIEAVEFGVR 198 (266)
T ss_dssp EEECCGGGTCC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEeCCHHHcCC---------CCCC-----------------------------chHHHHHHHHHHHHHHHHHHHHHcCcE
Confidence 99999655321 1112 3499999999998876543 899
Q ss_pred EEEEecccccCCC
Q psy11859 432 VVIVRPSIVLPSF 444 (851)
Q Consensus 432 ~~ivRp~~V~G~~ 444 (851)
+.+++||.|..+.
T Consensus 199 v~~v~PG~v~t~~ 211 (266)
T 3o38_A 199 INAVSPSIARHKF 211 (266)
T ss_dssp EEEEEECCCCC--
T ss_pred EEEEeCCcccchh
Confidence 9999999998774
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=160.78 Aligned_cols=210 Identities=13% Similarity=0.191 Sum_probs=137.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||+++++.|++.| .+|++++|... ++.++. + +...++.++.+|++
T Consensus 25 l~gk~vlVTGas~gIG~aia~~la~~G---~~V~~~~r~~~------~~~~~~---------~---~~~~~~~~~~~Dv~ 83 (266)
T 3grp_A 25 LTGRKALVTGATGGIGEAIARCFHAQG---AIVGLHGTRED------KLKEIA---------A---DLGKDVFVFSANLS 83 (266)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH---------H---HHCSSEEEEECCTT
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHHH---------H---HhCCceEEEEeecC
Confidence 678999999999999999999999998 68888888532 222211 0 11247899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++.+++... .+..++|+
T Consensus 84 d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~ 157 (266)
T 3grp_A 84 DRK------SIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIIN 157 (266)
T ss_dssp SHH------HHHHHHHHHHHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 986 6665554 79999999997542 2456788999999977777766431 13579999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ 433 (851)
+||..+.... .+. ..|+.||+..+.+.+.++ . ++++.
T Consensus 158 isS~~~~~~~---------~~~-----------------------------~~Y~asKaa~~~~~~~la~e~~~~gI~vn 199 (266)
T 3grp_A 158 ITSIVGVVGN---------PGQ-----------------------------TNYCAAKAGLIGFSKALAQEIASRNITVN 199 (266)
T ss_dssp ECCC----------------CH-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred ECCHHHcCCC---------CCc-----------------------------hhHHHHHHHHHHHHHHHHHHhhhhCcEEE
Confidence 9996543210 111 349999998887776554 3 89999
Q ss_pred EEecccccCCCCCC-chhHhhhhcCCceE-EEEcccCceeEEEeec--C--CCCccEEEEeCC
Q psy11859 434 IVRPSIVLPSFQEP-VPGWVDSLNGPVGV-LVASGKGVVRSMILND--L--STETQVFNISSN 490 (851)
Q Consensus 434 ivRp~~V~G~~~~p-~p~~i~~~~~~~~~-~~~~g~~v~~~~~~~~--~--~~~~~iyni~~~ 490 (851)
+++||.|.++.... .+.+.+.+....+. -++...++++++.... . .-.|+++++++|
T Consensus 200 ~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r~~~~edvA~~v~~L~s~~~~~itG~~i~vdGG 262 (266)
T 3grp_A 200 CIAPGFIKSAMTDKLNEKQKEAIMAMIPMKRMGIGEEIAFATVYLASDEAAYLTGQTLHINGG 262 (266)
T ss_dssp EEEECSBCSHHHHTCCHHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EEeeCcCCCchhhccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence 99999998764322 12222222221111 1122345554433221 1 235788888877
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.61 E-value=4.2e-15 Score=156.77 Aligned_cols=216 Identities=14% Similarity=0.127 Sum_probs=139.5
Q ss_pred hhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 213 ARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 213 ~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
....++|+||||||+|+||++++++|++.| .+|+++++..... ..+...++ . ....++.++.+
T Consensus 8 ~~~~~~k~vlITGas~giG~~ia~~l~~~G---~~v~~~~~~~~~~-~~~~~~~~---------~----~~~~~~~~~~~ 70 (256)
T 3ezl_A 8 HMVMSQRIAYVTGGMGGIGTSICQRLHKDG---FRVVAGCGPNSPR-RVKWLEDQ---------K----ALGFDFYASEG 70 (256)
T ss_dssp -----CEEEEETTTTSHHHHHHHHHHHHTT---EEEEEEECTTCSS-HHHHHHHH---------H----HTTCCCEEEEC
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCCHHH-HHHHHHHH---------H----hcCCeeEEEec
Confidence 345788999999999999999999999998 6788887443321 12212111 1 12247889999
Q ss_pred CCCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh----cCCce
Q psy11859 293 DILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK----MKKLV 354 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~----~~~~~ 354 (851)
|++|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++.. . +..
T Consensus 71 Dv~~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g 143 (256)
T 3ezl_A 71 NVGDWD------STKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVER-GWG 143 (256)
T ss_dssp CTTCHH------HHHHHHHHHHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCE
T ss_pred CCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCC
Confidence 999876 6655554 78999999997642 245678899999998888877743 3 357
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~ 429 (851)
++|++||..+... ..+. ..|+.||+..+.+++.++. +
T Consensus 144 ~iv~isS~~~~~~---------~~~~-----------------------------~~Y~asK~a~~~~~~~la~e~~~~g 185 (256)
T 3ezl_A 144 RIINISSVNGQKG---------QFGQ-----------------------------TNYSTAKAGIHGFTMSLAQEVATKG 185 (256)
T ss_dssp EEEEECCCCGGGS---------CSCC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred EEEEEcchhhccC---------CCCC-----------------------------cccHHHHHHHHHHHHHHHHHHHHhC
Confidence 8999999654321 1122 3499999988887765542 8
Q ss_pred CCEEEEecccccCCCCCC-chhHhhhhcCCceE-EEEcccCceeEEEeec--C--CCCccEEEEeCC
Q psy11859 430 LPVVIVRPSIVLPSFQEP-VPGWVDSLNGPVGV-LVASGKGVVRSMILND--L--STETQVFNISSN 490 (851)
Q Consensus 430 l~~~ivRp~~V~G~~~~p-~p~~i~~~~~~~~~-~~~~g~~v~~~~~~~~--~--~~~~~iyni~~~ 490 (851)
+.+.+++||.|..+.... .+.+.+.+....+. -++...++++++.... + ...|+++++++|
T Consensus 186 i~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG 252 (256)
T 3ezl_A 186 VTVNTVSPGYIGTDMVKAIRPDVLEKIVATIPVRRLGSPDEIGSIVAWLASEESGFSTGADFSLNGG 252 (256)
T ss_dssp EEEEEEEECSBCCHHHHTSCHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CEEEEEEECcccCccccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECCC
Confidence 999999999998764322 23333332111110 1122344444332211 1 346788888877
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-15 Score=161.08 Aligned_cols=175 Identities=16% Similarity=0.148 Sum_probs=127.2
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCC-------CHHHHHHHHhcChhhHHHhhhCcccCCCe
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGL-------TPKARLAEFSKLPVFERLRKECPAQLSRL 287 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~-------~~~~rl~~~~~~~~f~~l~~~~~~~~~~v 287 (851)
-++||+||||||+|+||++++++|++.| .+|++++|..+.. ...+++.+.. +.+. ....++
T Consensus 8 ~l~~k~~lVTGas~GIG~a~a~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~ 75 (277)
T 3tsc_A 8 KLEGRVAFITGAARGQGRAHAVRMAAEG---ADIIAVDIAGKLPSCVPYDPASPDDLSETV-----RLVE----AANRRI 75 (277)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEECCSCCCTTCCSCCCCHHHHHHHH-----HHHH----HTTCCE
T ss_pred ccCCCEEEEECCccHHHHHHHHHHHHcC---CEEEEEeccccccccccccccCHHHHHHHH-----HHHH----hcCCeE
Confidence 3689999999999999999999999998 7899998853211 1122332211 1111 123578
Q ss_pred EEEEcCCCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---
Q psy11859 288 HIIEGDILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM--- 350 (851)
Q Consensus 288 ~~v~gDi~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~--- 350 (851)
.++.+|++|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++...
T Consensus 76 ~~~~~D~~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~ 149 (277)
T 3tsc_A 76 VAAVVDTRDFD------RLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIE 149 (277)
T ss_dssp EEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 99999999986 6655543 69999999997643 2456788999999999999987542
Q ss_pred -CCceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-
Q psy11859 351 -KKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT- 428 (851)
Q Consensus 351 -~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~- 428 (851)
+.-.++|++||..+... .|. ...|+.||+..+.+.+.++.
T Consensus 150 ~~~~g~iv~isS~~~~~~----------~~~----------------------------~~~Y~asKaa~~~~~~~la~e 191 (277)
T 3tsc_A 150 GGRGGSIILISSAAGMKM----------QPF----------------------------MIHYTASKHAVTGLARAFAAE 191 (277)
T ss_dssp HTSCEEEEEECCGGGTSC----------CSS----------------------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEccHhhCCC----------CCC----------------------------chhhHHHHHHHHHHHHHHHHH
Confidence 22368999999755321 111 13499999999988876543
Q ss_pred ----CCCEEEEecccccCCCC
Q psy11859 429 ----KLPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 429 ----~l~~~ivRp~~V~G~~~ 445 (851)
++.+..++||.|..+..
T Consensus 192 ~~~~gi~vn~v~PG~v~T~~~ 212 (277)
T 3tsc_A 192 LGKHSIRVNSVHPGPVNTPMG 212 (277)
T ss_dssp HGGGTEEEEEEEESSBSSGGG
T ss_pred hCccCeEEEEEEeCCCcCCcc
Confidence 89999999999988754
|
| >2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=5.5e-16 Score=137.38 Aligned_cols=91 Identities=27% Similarity=0.278 Sum_probs=86.5
Q ss_pred eeeccceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCch
Q psy11859 686 HYFFVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSD 765 (851)
Q Consensus 686 h~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~ 765 (851)
+.+.++|.|..|++.|.+...|..|+++|.+++||+| +.|++.|.+...|..|+++|++++||.|. .|++.|.+..
T Consensus 3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~ 78 (96)
T 2dmd_A 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIHSDERPFKCQ--ICPYASRNSS 78 (96)
T ss_dssp CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEEC--SSSCCEESSHHHHHHHHHHSCCCCCEECS--SSSCEESSHH
T ss_pred CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeC--CCCCCccCCHHHHHHHHHHhCCCCCccCC--CCCCccCCHH
Confidence 4567899999999999999999999999999999999 89999999999999999999999999998 8999999999
Q ss_pred hHHHhhhhcCCCCCc
Q psy11859 766 ELSRHRRSHFGIKPY 780 (851)
Q Consensus 766 ~L~~H~r~H~gekp~ 780 (851)
.|..|+++|+++++.
T Consensus 79 ~l~~H~~~h~~~~~p 93 (96)
T 2dmd_A 79 QLTVHLRSHTGDSGP 93 (96)
T ss_dssp HHHHHHTTCCSCCCC
T ss_pred HHHHHHHHhcCCCCC
Confidence 999999999998764
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.6e-15 Score=155.62 Aligned_cols=167 Identities=10% Similarity=0.041 Sum_probs=118.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|..... +.+. +.+.. ...++.++.+|++
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G---~~V~~~~r~~~~~---~~~~--------~~~~~----~~~~~~~~~~Dv~ 66 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEG---FTVFAGRRNGEKL---APLV--------AEIEA----AGGRIVARSLDAR 66 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTT---CEEEEEESSGGGG---HHHH--------HHHHH----TTCEEEEEECCTT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHH---HHHH--------HHHHh----cCCeEEEEECcCC
Confidence 578999999999999999999999998 6899999975432 1111 11111 1347899999999
Q ss_pred CCcCCCCHHHHHHHhc------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEe
Q psy11859 296 QANLGIKDSDLLMLQE------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHF 359 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~v 359 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+-.++|++
T Consensus 67 ~~~------~v~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~i 140 (252)
T 3h7a_A 67 NED------EVTAFLNAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFT 140 (252)
T ss_dssp CHH------HHHHHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHH------HHHHHHHHHHhhCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 986 6666654 78999999997543 2456788999999999999887431 124689999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE-E
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV-V 433 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~-~ 433 (851)
||..+... .|. ...|+.||+..+.+.+.++. ++.+ .
T Consensus 141 sS~~~~~~----------~~~----------------------------~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n 182 (252)
T 3h7a_A 141 GATASLRG----------GSG----------------------------FAAFASAKFGLRAVAQSMARELMPKNIHVAH 182 (252)
T ss_dssp EEGGGTCC----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred CCHHHcCC----------CCC----------------------------CccHHHHHHHHHHHHHHHHHHhhhcCCEEEE
Confidence 99654321 111 13499999999988876543 7888 7
Q ss_pred EEecccccCCC
Q psy11859 434 IVRPSIVLPSF 444 (851)
Q Consensus 434 ivRp~~V~G~~ 444 (851)
++.||.|..+.
T Consensus 183 ~v~PG~v~T~~ 193 (252)
T 3h7a_A 183 LIIDSGVDTAW 193 (252)
T ss_dssp EEEC-------
T ss_pred EecCCccCChh
Confidence 89999886653
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.60 E-value=9e-15 Score=153.74 Aligned_cols=165 Identities=12% Similarity=0.094 Sum_probs=117.5
Q ss_pred cchhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEE
Q psy11859 210 GDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHI 289 (851)
Q Consensus 210 ~~i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~ 289 (851)
.+...-++||+||||||+|+||++++++|++.| .+|++++|.. +.++++ .++.+
T Consensus 11 ~~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G---~~V~~~~r~~------~~~~~~-----------------~~~~~ 64 (249)
T 1o5i_A 11 HHMELGIRDKGVLVLAASRGIGRAVADVLSQEG---AEVTICARNE------ELLKRS-----------------GHRYV 64 (249)
T ss_dssp -----CCTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCH------HHHHHT-----------------CSEEE
T ss_pred hhHHhccCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEcCCH------HHHHhh-----------------CCeEE
Confidence 345566889999999999999999999999998 6899999864 111110 25667
Q ss_pred EEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHH----HhcCCceEEEE
Q psy11859 290 IEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIA----LKMKKLVAFIH 358 (851)
Q Consensus 290 v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a----~~~~~~~~fV~ 358 (851)
+ +|+ ..+ ...+...+.++|+|||+||.... .+.++..+++|+.|+.++.+++ ++.+ ..++|+
T Consensus 65 ~-~D~-~~~----~~~~~~~~~~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~ 137 (249)
T 1o5i_A 65 V-CDL-RKD----LDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVA 137 (249)
T ss_dssp E-CCT-TTC----HHHHHHHSCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEE
T ss_pred E-eeH-HHH----HHHHHHHhcCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEE
Confidence 7 999 222 12333334489999999996543 2456788999999987765554 3443 689999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..++... .+. ..|+.||+..|.+.+.++. ++.+.
T Consensus 138 isS~~~~~~~---------~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~ 179 (249)
T 1o5i_A 138 ITSFSVISPI---------ENL-----------------------------YTSNSARMALTGFLKTLSFEVAPYGITVN 179 (249)
T ss_dssp ECCGGGTSCC---------TTB-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred EcchHhcCCC---------CCC-----------------------------chHHHHHHHHHHHHHHHHHHhhhcCeEEE
Confidence 9997664321 111 3499999999988876542 89999
Q ss_pred EEecccccCCCC
Q psy11859 434 IVRPSIVLPSFQ 445 (851)
Q Consensus 434 ivRp~~V~G~~~ 445 (851)
++|||.|.++..
T Consensus 180 ~v~Pg~v~t~~~ 191 (249)
T 1o5i_A 180 CVAPGWTETERV 191 (249)
T ss_dssp EEEECSBCCTTH
T ss_pred EEeeCCCccCcc
Confidence 999999998853
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.8e-15 Score=159.21 Aligned_cols=174 Identities=20% Similarity=0.318 Sum_probs=128.1
Q ss_pred hhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 213 ARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 213 ~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
..-++||+||||||+|+||++++++|++.|.....|+++.|.... +.++ -+.+....+ ..++.++.+
T Consensus 28 ~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~------~~~~-----~~~l~~~~~--~~~~~~~~~ 94 (287)
T 3rku_A 28 AERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEK------LEEL-----KKTIDQEFP--NAKVHVAQL 94 (287)
T ss_dssp HHHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHH------HHHH-----HHHHHHHCT--TCEEEEEEC
T ss_pred hhhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHH------HHHH-----HHHHHhhCC--CCeEEEEEC
Confidence 345789999999999999999999999998433489999886422 2111 111222211 247889999
Q ss_pred CCCCCcCCCCHHHHHHHhc-------CccEEEEccccCC----c----chhHHHHHHHHHHHHHHHHHHHH----hcCCc
Q psy11859 293 DILQANLGIKDSDLLMLQE-------EVSVVFNGAASLK----L----EAELKENVAANTRGTQRLLDIAL----KMKKL 353 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~----~----~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~ 353 (851)
|++|++ ++..+++ ++|+|||+||... + .+.++..+++|+.|+.++++++. +. +.
T Consensus 95 Dv~d~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~ 167 (287)
T 3rku_A 95 DITQAE------KIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAK-NS 167 (287)
T ss_dssp CTTCGG------GHHHHHHTSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TC
T ss_pred CCCCHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 999987 6666654 5899999999653 1 24577889999999999999984 23 35
Q ss_pred eEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----
Q psy11859 354 VAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----- 428 (851)
Q Consensus 354 ~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----- 428 (851)
.++|++||..+... .|. ...|+.||+..+.+.+.++.
T Consensus 168 g~IV~isS~~~~~~----------~~~----------------------------~~~Y~asKaa~~~l~~~la~e~~~~ 209 (287)
T 3rku_A 168 GDIVNLGSIAGRDA----------YPT----------------------------GSIYCASKFAVGAFTDSLRKELINT 209 (287)
T ss_dssp CEEEEECCGGGTSC----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CeEEEECChhhcCC----------CCC----------------------------CchHHHHHHHHHHHHHHHHHHhhhc
Confidence 78999999654321 111 13499999999988876643
Q ss_pred CCCEEEEecccccCCC
Q psy11859 429 KLPVVIVRPSIVLPSF 444 (851)
Q Consensus 429 ~l~~~ivRp~~V~G~~ 444 (851)
++.+.+|+||.|..+.
T Consensus 210 gIrvn~v~PG~v~T~~ 225 (287)
T 3rku_A 210 KIRVILIAPGLVETEF 225 (287)
T ss_dssp SCEEEEEEESCEESSH
T ss_pred CCEEEEEeCCcCcCcc
Confidence 8999999999998763
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.5e-15 Score=156.32 Aligned_cols=167 Identities=20% Similarity=0.188 Sum_probs=125.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||+++++.|++.| .+|++++|...... +...+ +. ....++.++.+|++
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~~~--~~~~~---------~~----~~~~~~~~~~~Dv~ 92 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGAAIAEGLAGAG---AHVILHGVKPGSTA--AVQQR---------II----ASGGTAQELAGDLS 92 (275)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSTTTTH--HHHHH---------HH----HTTCCEEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEcCCHHHHH--HHHHH---------HH----hcCCeEEEEEecCC
Confidence 689999999999999999999999998 68999999765421 11111 11 12347899999999
Q ss_pred CCcCCCCHHHHHHHhc------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEe
Q psy11859 296 QANLGIKDSDLLMLQE------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHF 359 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~v 359 (851)
+++ +...+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|++
T Consensus 93 ~~~------~~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~i 166 (275)
T 4imr_A 93 EAG------AGTDLIERAEAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSI 166 (275)
T ss_dssp STT------HHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHH------HHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 987 5555544 78999999996432 2456778999999999999998431 135799999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..+... ..+ ...|+.||+..+.+++.++. ++.+..
T Consensus 167 sS~~~~~~---------~~~-----------------------------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~ 208 (275)
T 4imr_A 167 GSINQLRP---------KSV-----------------------------VTAYAATKAAQHNLIQSQARDFAGDNVLLNT 208 (275)
T ss_dssp CCGGGTSC---------CTT-----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred CCHHhCCC---------CCC-----------------------------chhhHHHHHHHHHHHHHHHHHhcccCcEEEE
Confidence 99654321 111 13499999999988876543 899999
Q ss_pred EecccccCCC
Q psy11859 435 VRPSIVLPSF 444 (851)
Q Consensus 435 vRp~~V~G~~ 444 (851)
++||.|..+.
T Consensus 209 v~PG~v~T~~ 218 (275)
T 4imr_A 209 LAPGLVDTDR 218 (275)
T ss_dssp EEESSBCSHH
T ss_pred EEeccccCcc
Confidence 9999998763
|
| >2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=9.2e-16 Score=135.92 Aligned_cols=92 Identities=27% Similarity=0.579 Sum_probs=84.4
Q ss_pred ccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCCCCccccc
Q psy11859 713 FENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLLA 792 (851)
Q Consensus 713 ~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~Cgk~f~~~ 792 (851)
.+.+++||+| +.|++.|.+...|..|++.|.++++|.|. .|++.|.+...|.+|+++|++++||.|+.|++.|..
T Consensus 2 s~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~- 76 (96)
T 2dmd_A 2 SSGSSGPHKC--EVCGKCFSRKDKLKTHMRCHTGVKPYKCK--TCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRN- 76 (96)
T ss_dssp CCCCCCCCCB--TTTTBCCCCHHHHHHHGGGCCCCCSEECS--SSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESS-
T ss_pred CCCCCcCeEC--CCCCCccCCHHHHHHHHHhcCCCCCEeCC--CCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCC-
Confidence 3578899999 89999999999999999999999999998 899999999999999999999999999999997643
Q ss_pred cccCCcccccCcccccccccCCCCCCccChHHHHHHHHhhcCCcch
Q psy11859 793 ILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVHERQKYK 838 (851)
Q Consensus 793 ~~~~~H~~~C~k~f~~~~~~~~~~~pf~Ck~~L~~H~r~Htgek~~ 838 (851)
+..|..|+++|+++++.
T Consensus 77 -----------------------------~~~l~~H~~~h~~~~~p 93 (96)
T 2dmd_A 77 -----------------------------SSQLTVHLRSHTGDSGP 93 (96)
T ss_dssp -----------------------------HHHHHHHHTTCCSCCCC
T ss_pred -----------------------------HHHHHHHHHHhcCCCCC
Confidence 35899999999998854
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.60 E-value=5.6e-15 Score=157.25 Aligned_cols=171 Identities=19% Similarity=0.216 Sum_probs=125.2
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
.-++||+||||||+|+||++++++|++.| .+|+++++.... ..+.+. +.+. ....++.++.+|
T Consensus 14 ~~l~~k~~lVTGas~gIG~aia~~l~~~G---~~V~~~~~~~~~--~~~~~~--------~~~~----~~~~~~~~~~~D 76 (270)
T 3is3_A 14 GRLDGKVALVTGSGRGIGAAVAVHLGRLG---AKVVVNYANSTK--DAEKVV--------SEIK----ALGSDAIAIKAD 76 (270)
T ss_dssp TCCTTCEEEESCTTSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHH--------HHHH----HTTCCEEEEECC
T ss_pred CCcCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCCCHH--HHHHHH--------HHHH----hcCCcEEEEEcC
Confidence 34789999999999999999999999998 688887765321 111111 1111 123578999999
Q ss_pred CCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhcC-CceEEEE
Q psy11859 294 ILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKMK-KLVAFIH 358 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~-~~~~fV~ 358 (851)
++|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++...- .-.++|+
T Consensus 77 v~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~ 150 (270)
T 3is3_A 77 IRQVP------EIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVL 150 (270)
T ss_dssp TTSHH------HHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEE
Confidence 99986 6665554 78999999997643 24567889999999999999997642 1238999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+.. ....+. ..|+.||+..+.+.+.++. ++.+.
T Consensus 151 isS~~~~~--------~~~~~~-----------------------------~~Y~asKaa~~~~~~~la~e~~~~gi~vn 193 (270)
T 3is3_A 151 TSSNTSKD--------FSVPKH-----------------------------SLYSGSKGAVDSFVRIFSKDCGDKKITVN 193 (270)
T ss_dssp ECCTTTTT--------CCCTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred EeCchhcc--------CCCCCC-----------------------------chhHHHHHHHHHHHHHHHHHhcccCeEEE
Confidence 99954210 001111 3499999999998876543 89999
Q ss_pred EEecccccCCC
Q psy11859 434 IVRPSIVLPSF 444 (851)
Q Consensus 434 ivRp~~V~G~~ 444 (851)
.++||.|..+.
T Consensus 194 ~v~PG~v~T~~ 204 (270)
T 3is3_A 194 AVAPGGTVTDM 204 (270)
T ss_dssp EEEECSBCSTT
T ss_pred EEEeCCccChh
Confidence 99999998875
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-15 Score=157.48 Aligned_cols=167 Identities=17% Similarity=0.202 Sum_probs=124.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||++++++|++.| .+|++++|.... .+.+.+ .+ ..++.++.+|++
T Consensus 7 l~gk~~lVTGas~gIG~a~a~~l~~~G---~~V~~~~r~~~~---~~~~~~--------~~-------~~~~~~~~~Dv~ 65 (248)
T 3op4_A 7 LEGKVALVTGASRGIGKAIAELLAERG---AKVIGTATSESG---AQAISD--------YL-------GDNGKGMALNVT 65 (248)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESSHHH---HHHHHH--------HH-------GGGEEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHH--------Hh-------cccceEEEEeCC
Confidence 578999999999999999999999998 788999886422 111111 11 125678999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|+
T Consensus 66 d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~ 139 (248)
T 3op4_A 66 NPE------SIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIIN 139 (248)
T ss_dssp CHH------HHHHHHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 986 6666554 79999999997643 2456788999999999999998541 23578999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ 433 (851)
+||..+... ..+. ..|+.||+..+.+.+.++ . ++++.
T Consensus 140 isS~~~~~~---------~~~~-----------------------------~~Y~asK~a~~~l~~~la~e~~~~gi~vn 181 (248)
T 3op4_A 140 VGSVVGTMG---------NAGQ-----------------------------ANYAAAKAGVIGFTKSMAREVASRGVTVN 181 (248)
T ss_dssp ECCHHHHHC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred EcchhhcCC---------CCCC-----------------------------hHHHHHHHHHHHHHHHHHHHHHHhCeEEE
Confidence 999654321 1112 349999998887776553 3 89999
Q ss_pred EEecccccCCCCCC
Q psy11859 434 IVRPSIVLPSFQEP 447 (851)
Q Consensus 434 ivRp~~V~G~~~~p 447 (851)
+++||.|..+....
T Consensus 182 ~v~PG~v~T~~~~~ 195 (248)
T 3op4_A 182 TVAPGFIETDMTKA 195 (248)
T ss_dssp EEEECSBSSTTTTT
T ss_pred EEeeCCCCCchhhh
Confidence 99999998876543
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.9e-15 Score=155.61 Aligned_cols=214 Identities=9% Similarity=0.033 Sum_probs=143.4
Q ss_pred cCCCEEEEecCccH--HHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 216 YAGRSVLVTGGTGF--MGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 216 ~~~k~VlVTGatGF--IG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
++||+||||||+|+ ||++++++|++.| .+|+++.|.... .+.+.++ .++.+ ..++.++.+|
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~~---------~~~~~--~~~~~~~~~D 67 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAG---ARLIFTYAGERL---EKSVHEL---------AGTLD--RNDSIILPCD 67 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTT---CEEEEEESSGGG---HHHHHHH---------HHTSS--SCCCEEEECC
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCC---CEEEEecCchHH---HHHHHHH---------HHhcC--CCCceEEeCC
Confidence 57899999999999 9999999999998 688898887432 2222222 11111 1278999999
Q ss_pred CCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-----------chhHHHHHHHHHHHHHHHHHHHHhcC-Cce
Q psy11859 294 ILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-----------EAELKENVAANTRGTQRLLDIALKMK-KLV 354 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-----------~~~~~~~~~~Nv~Gt~~ll~~a~~~~-~~~ 354 (851)
+++++ ++..+++ .+|+|||+||.... .+.+...+++|+.|+.++++++...- .-.
T Consensus 68 ~~~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g 141 (266)
T 3oig_A 68 VTNDA------EIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGG 141 (266)
T ss_dssp CSSSH------HHHHHHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCE
T ss_pred CCCHH------HHHHHHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCc
Confidence 99987 6665543 68999999997541 13456789999999999999997642 235
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~ 429 (851)
++|++||..+... .|. ...|+.||+..+.+++.++. +
T Consensus 142 ~iv~isS~~~~~~----------~~~----------------------------~~~Y~asKaa~~~~~~~la~e~~~~g 183 (266)
T 3oig_A 142 SIVTLTYLGGELV----------MPN----------------------------YNVMGVAKASLDASVKYLAADLGKEN 183 (266)
T ss_dssp EEEEEECGGGTSC----------CTT----------------------------THHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred eEEEEeccccccc----------CCC----------------------------cchhHHHHHHHHHHHHHHHHHHhhcC
Confidence 8999999655321 111 13499999999988876543 7
Q ss_pred CCEEEEecccccCCCCCCch---hHhhhhcCCceE-EEEcccCceeEEEeec----CCCCccEEEEeCC
Q psy11859 430 LPVVIVRPSIVLPSFQEPVP---GWVDSLNGPVGV-LVASGKGVVRSMILND----LSTETQVFNISSN 490 (851)
Q Consensus 430 l~~~ivRp~~V~G~~~~p~p---~~i~~~~~~~~~-~~~~g~~v~~~~~~~~----~~~~~~iyni~~~ 490 (851)
+.+.+++||.|..+.....+ .+.+.+....+. -.+...++++.+.... ....|+++++++|
T Consensus 184 i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dva~~v~~l~s~~~~~~tG~~i~vdGG 252 (266)
T 3oig_A 184 IRVNSISAGPIRTLSAKGISDFNSILKDIEERAPLRRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSG 252 (266)
T ss_dssp EEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cEEEEEecCcccccccccccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCchhcCcCCEEEECCC
Confidence 99999999999886544322 222222111110 0112234444332211 1346788888887
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.3e-15 Score=156.96 Aligned_cols=160 Identities=19% Similarity=0.225 Sum_probs=119.5
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+||||||+|+||+++++.|++.| .+|++++|... ++.++. +.+ ..++.++.+|++|++
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~------~~~~~~-----~~~-------~~~~~~~~~Dv~~~~ 59 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQG---HKVIATGRRQE------RLQELK-----DEL-------GDNLYIAQLDVRNRA 59 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH-----HHH-------CTTEEEEECCTTCHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHHH-----HHh-------cCceEEEEcCCCCHH
Confidence 589999999999999999999998 78999988632 222111 111 136889999999886
Q ss_pred CCCCHHHHHHHhc-------CccEEEEccccCC----c----chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEee
Q psy11859 299 LGIKDSDLLMLQE-------EVSVVFNGAASLK----L----EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHFS 360 (851)
Q Consensus 299 lgls~~~~~~~~~-------~vd~ViH~AA~~~----~----~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~vS 360 (851)
++..+++ ++|+|||+||... + .+.++..+++|+.|+.++++++... .+..++|++|
T Consensus 60 ------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~is 133 (248)
T 3asu_A 60 ------AIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIG 133 (248)
T ss_dssp ------HHHHHHHTSCTTTCCCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred ------HHHHHHHHHHHhCCCCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 6666654 6899999999652 1 2456788999999999999988631 1357999999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~iv 435 (851)
|..+... ..+. ..|+.||+..|.+.+.++. ++.+.++
T Consensus 134 S~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v 175 (248)
T 3asu_A 134 STAGSWP---------YAGG-----------------------------NVYGATKAFVRQFSLNLRTDLHGTAVRVTDI 175 (248)
T ss_dssp CGGGTSC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHTTTSCCEEEEE
T ss_pred cchhccC---------CCCC-----------------------------chHHHHHHHHHHHHHHHHHHhhhcCcEEEEE
Confidence 9755321 1111 3499999999998876542 8999999
Q ss_pred ecccccCC
Q psy11859 436 RPSIVLPS 443 (851)
Q Consensus 436 Rp~~V~G~ 443 (851)
+||.|.|+
T Consensus 176 ~PG~v~gT 183 (248)
T 3asu_A 176 EPGLVGGT 183 (248)
T ss_dssp EECSBCC-
T ss_pred eccccccC
Confidence 99999853
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-15 Score=160.60 Aligned_cols=215 Identities=13% Similarity=0.150 Sum_probs=141.5
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
.-+++|+||||||+|+||+++++.|++.| .+|++++|.... .+.+.+ .+.. ...++.++.+|
T Consensus 24 ~~l~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~---~~~~~~--------~~~~----~~~~~~~~~~D 85 (270)
T 3ftp_A 24 KTLDKQVAIVTGASRGIGRAIALELARRG---AMVIGTATTEAG---AEGIGA--------AFKQ----AGLEGRGAVLN 85 (270)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSHHH---HHHHHH--------HHHH----HTCCCEEEECC
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHH--------HHHh----cCCcEEEEEEe
Confidence 34689999999999999999999999998 689999986422 111111 1111 12467899999
Q ss_pred CCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEE
Q psy11859 294 ILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAF 356 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~f 356 (851)
++|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+-.++
T Consensus 86 v~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~i 159 (270)
T 3ftp_A 86 VNDAT------AVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRI 159 (270)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEE
Confidence 99886 6665554 79999999997543 2456788999999999999988632 124689
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~ 431 (851)
|++||..+... ..+. ..|+.||+..+.+.+.++ . ++.
T Consensus 160 v~isS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~l~~~la~e~~~~gI~ 201 (270)
T 3ftp_A 160 VNITSVVGSAG---------NPGQ-----------------------------VNYAAAKAGVAGMTRALAREIGSRGIT 201 (270)
T ss_dssp EEECCHHHHHC---------CTTB-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEECchhhCCC---------CCCc-----------------------------hhHHHHHHHHHHHHHHHHHHHhhhCeE
Confidence 99999654321 1111 349999998887776553 2 899
Q ss_pred EEEEecccccCCCCCCch-hHhhhhcCCceE-EEEcccCceeEEEeec--C--CCCccEEEEeCC
Q psy11859 432 VVIVRPSIVLPSFQEPVP-GWVDSLNGPVGV-LVASGKGVVRSMILND--L--STETQVFNISSN 490 (851)
Q Consensus 432 ~~ivRp~~V~G~~~~p~p-~~i~~~~~~~~~-~~~~g~~v~~~~~~~~--~--~~~~~iyni~~~ 490 (851)
+.+++||.|..+....++ .....+....+. -++...++++++.... . ...|+++++++|
T Consensus 202 vn~v~PG~v~T~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 266 (270)
T 3ftp_A 202 VNCVAPGFIDTDMTKGLPQEQQTALKTQIPLGRLGSPEDIAHAVAFLASPQAGYITGTTLHVNGG 266 (270)
T ss_dssp EEEEEECSBCSHHHHHSCHHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EEEEEeCCCcCcchhhcCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCCcCCccCcEEEECCC
Confidence 999999999876432211 111112111111 0122344544433211 1 235788888877
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-15 Score=158.13 Aligned_cols=165 Identities=20% Similarity=0.291 Sum_probs=124.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||++++++|++.| .+|++++|... ++.++. ++ ...++.++.+|++
T Consensus 6 l~gk~~lVTGas~gIG~a~a~~l~~~G---~~V~~~~r~~~------~~~~~~---------~~---~~~~~~~~~~Dv~ 64 (255)
T 4eso_A 6 YQGKKAIVIGGTHGMGLATVRRLVEGG---AEVLLTGRNES------NIARIR---------EE---FGPRVHALRSDIA 64 (255)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH---------HH---HGGGEEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHHH---------HH---hCCcceEEEccCC
Confidence 578999999999999999999999998 68999998642 222211 11 1237889999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEee
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM-KKLVAFIHFS 360 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~vS 360 (851)
|++ ++..++ .++|++||+||.... .+.++..+++|+.|+.++++++... ..-.++|++|
T Consensus 65 ~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 65 DLN------EIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp CHH------HHHHHHHHHHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 886 555443 378999999997643 2456788999999999999999753 1134899999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~iv 435 (851)
|..+... ..+. ..|+.||+..+.+.+.++. ++.+..+
T Consensus 139 S~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v 180 (255)
T 4eso_A 139 SVADEGG---------HPGM-----------------------------SVYSASKAALVSFASVLAAELLPRGIRVNSV 180 (255)
T ss_dssp CGGGSSB---------CTTB-----------------------------HHHHHHHHHHHHHHHHHHHHTGGGTCEEEEE
T ss_pred ChhhcCC---------CCCc-----------------------------hHHHHHHHHHHHHHHHHHHHHhhhCcEEEEE
Confidence 9755321 1111 3499999999988876543 8999999
Q ss_pred ecccccCCCC
Q psy11859 436 RPSIVLPSFQ 445 (851)
Q Consensus 436 Rp~~V~G~~~ 445 (851)
+||.|..+..
T Consensus 181 ~PG~v~T~~~ 190 (255)
T 4eso_A 181 SPGFIDTPTK 190 (255)
T ss_dssp EECSBCCSST
T ss_pred ecCcccCccc
Confidence 9999998754
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.5e-15 Score=158.54 Aligned_cols=168 Identities=17% Similarity=0.157 Sum_probs=124.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||+++++.|++.| .+|++++|.... +.+. .+.+.+. ...++.++.+|++
T Consensus 18 l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~------~~~~-----~~~l~~~---~~~~~~~~~~Dv~ 80 (266)
T 4egf_A 18 LDGKRALITGATKGIGADIARAFAAAG---ARLVLSGRDVSE------LDAA-----RRALGEQ---FGTDVHTVAIDLA 80 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHH------HHHH-----HHHHHHH---HCCCEEEEECCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH------HHHH-----HHHHHHh---cCCcEEEEEecCC
Confidence 578999999999999999999999998 689999986422 1111 1111111 1247899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc----CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM----KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~~~~~fV 357 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... +.-.++|
T Consensus 81 ~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv 154 (266)
T 4egf_A 81 EPD------APAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAII 154 (266)
T ss_dssp STT------HHHHHHHHHHHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 987 6655544 79999999997642 2356788999999999999988643 1135899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+... ..+. ..|+.||+..+.+.+.++. ++.+
T Consensus 155 ~isS~~~~~~---------~~~~-----------------------------~~Y~asK~a~~~l~~~la~e~~~~gI~v 196 (266)
T 4egf_A 155 TVASAAALAP---------LPDH-----------------------------YAYCTSKAGLVMATKVLARELGPHGIRA 196 (266)
T ss_dssp EECCGGGTSC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEcchhhccC---------CCCC-----------------------------hHHHHHHHHHHHHHHHHHHHHhhhCeEE
Confidence 9999755321 1111 3499999999988876543 8999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
..++||.|..+.
T Consensus 197 n~v~PG~v~T~~ 208 (266)
T 4egf_A 197 NSVCPTVVLTEM 208 (266)
T ss_dssp EEEEESCBCSHH
T ss_pred EEEEeCCCcCch
Confidence 999999998764
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.2e-15 Score=158.10 Aligned_cols=181 Identities=15% Similarity=0.158 Sum_probs=130.9
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCC------CHHHHHHHHhcChhhHHHhhhCcccCCCeE
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGL------TPKARLAEFSKLPVFERLRKECPAQLSRLH 288 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~------~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~ 288 (851)
-++||+||||||+|+||++++++|++.| .+|++++|..... ...+++.+.. +.+. ....++.
T Consensus 10 ~l~gk~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~ 77 (278)
T 3sx2_A 10 PLTGKVAFITGAARGQGRAHAVRLAADG---ADIIAVDLCDQIASVPYPLATPEELAATV-----KLVE----DIGSRIV 77 (278)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEECCSCCTTCSSCCCCHHHHHHHH-----HHHH----HHTCCEE
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCC---CeEEEEecccccccccccccchHHHHHHH-----HHHH----hcCCeEE
Confidence 3689999999999999999999999998 7899998874211 1122332211 1111 1235899
Q ss_pred EEEcCCCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc---chhHHHHHHHHHHHHHHHHHHHHhc----CCce
Q psy11859 289 IIEGDILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL---EAELKENVAANTRGTQRLLDIALKM----KKLV 354 (851)
Q Consensus 289 ~v~gDi~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~---~~~~~~~~~~Nv~Gt~~ll~~a~~~----~~~~ 354 (851)
++.+|++|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... +.-.
T Consensus 78 ~~~~D~~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g 151 (278)
T 3sx2_A 78 ARQADVRDRE------SLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGG 151 (278)
T ss_dssp EEECCTTCHH------HHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCE
T ss_pred EEeCCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999986 6666654 79999999997654 3567788999999999999998542 1246
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~ 429 (851)
++|++||..+..... .+ .+. ...|+.||+..+.+++.++. +
T Consensus 152 ~iv~isS~~~~~~~~--------~~-~~~-------------------------~~~Y~asKaa~~~~~~~la~e~~~~g 197 (278)
T 3sx2_A 152 SIVLISSSAGLAGVG--------SA-DPG-------------------------SVGYVAAKHGVVGLMRVYANLLAGQM 197 (278)
T ss_dssp EEEEECCGGGTSCCC--------CS-SHH-------------------------HHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred EEEEEccHHhcCCCc--------cC-CCC-------------------------chHhHHHHHHHHHHHHHHHHHHhccC
Confidence 899999975532210 00 110 13499999999988876643 7
Q ss_pred CCEEEEecccccCCCCCC
Q psy11859 430 LPVVIVRPSIVLPSFQEP 447 (851)
Q Consensus 430 l~~~ivRp~~V~G~~~~p 447 (851)
+.+.+++||.|.++....
T Consensus 198 i~vn~v~PG~v~T~~~~~ 215 (278)
T 3sx2_A 198 IRVNSIHPSGVETPMINN 215 (278)
T ss_dssp EEEEEEEESCBSSTTTSS
T ss_pred cEEEEEecCCccCccchh
Confidence 999999999999987543
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.60 E-value=7.4e-15 Score=159.07 Aligned_cols=205 Identities=16% Similarity=0.175 Sum_probs=128.6
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
..++|+||||||+|+||.+++++|++.| .+|++++|.... +.+ ..+.|.+. ...++.++.+|+
T Consensus 9 ~~~~k~vlITGas~GIG~~~a~~L~~~G---~~V~~~~r~~~~------~~~-----~~~~l~~~---~~~~~~~~~~Dl 71 (311)
T 3o26_A 9 VTKRRCAVVTGGNKGIGFEICKQLSSNG---IMVVLTCRDVTK------GHE-----AVEKLKNS---NHENVVFHQLDV 71 (311)
T ss_dssp ---CCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESCHHH------HHH-----HHHHHHTT---TCCSEEEEECCT
T ss_pred cCCCcEEEEecCCchHHHHHHHHHHHCC---CEEEEEeCCHHH------HHH-----HHHHHHhc---CCCceEEEEccC
Confidence 3578999999999999999999999998 689999997532 111 11122221 224799999999
Q ss_pred CCC-cCCCCHHHHHHHh-------cCccEEEEccccCCc-------------------------------------chhH
Q psy11859 295 LQA-NLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------------------------------------EAEL 329 (851)
Q Consensus 295 ~~~-~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------------------------------------~~~~ 329 (851)
+++ + .+..+. .++|+|||+||.... .+.+
T Consensus 72 ~~~~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (311)
T 3o26_A 72 TDPIA------TMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELA 145 (311)
T ss_dssp TSCHH------HHHHHHHHHHHHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHH
T ss_pred CCcHH------HHHHHHHHHHHhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhh
Confidence 997 4 444333 379999999997632 1334
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCceEEEEeeeeeeeCCCc---ccccccC-CCCCCHHHHHHHHhhccHHHHhhhCC
Q psy11859 330 KENVAANTRGTQRLLDIALKM---KKLVAFIHFSTAFCHPDQK---VLEEKLY-PSPVSPHDIMRAMEWMDDETIKQLTP 402 (851)
Q Consensus 330 ~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~vSTa~~~~~~~---~i~E~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~ 402 (851)
+..+++|+.|+.++++++... .+..++|++||..+..... ...+... ....+...+-.......++..+. .
T Consensus 146 ~~~~~~N~~g~~~l~~~~~~~l~~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 223 (311)
T 3o26_A 146 EECLKINYNGVKSVTEVLIPLLQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKEN--L 223 (311)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTT--C
T ss_pred hhheeeeeehHHHHHHHhhHhhccCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhcc--c
Confidence 567999999999999988532 2357999999975532210 0000000 01111211111111111111111 1
Q ss_pred cccCCCC---chhhHHHHHHHHHHHHHhC---CCCEEEEecccccCCC
Q psy11859 403 KILGPHP---NSYTFTKRLTETLVDEYKT---KLPVVIVRPSIVLPSF 444 (851)
Q Consensus 403 ~~~~~~~---n~Y~~SK~~aE~~v~~~~~---~l~~~ivRp~~V~G~~ 444 (851)
....+|| ..|+.||+..+.+++.++. ++.+..+.||.|..+.
T Consensus 224 ~~~~~~~~~~~~Y~~SK~a~~~~~~~la~e~~~i~v~~v~PG~v~T~~ 271 (311)
T 3o26_A 224 IETNGWPSFGAAYTTSKACLNAYTRVLANKIPKFQVNCVCPGLVKTEM 271 (311)
T ss_dssp TTTTTCCSSCHHHHHHHHHHHHHHHHHHHHCTTSEEEEECCCSBCSGG
T ss_pred cccccCcccchhhHHHHHHHHHHHHHHHhhcCCceEEEecCCceecCC
Confidence 1122333 5799999999999987764 7889999999997654
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-15 Score=159.09 Aligned_cols=165 Identities=18% Similarity=0.200 Sum_probs=118.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.++. + +...++.++.+|++
T Consensus 7 l~~k~vlITGas~gIG~~~a~~l~~~G---~~V~~~~r~~~------~~~~~~---------~---~~~~~~~~~~~D~~ 65 (261)
T 3n74_A 7 LEGKVALITGAGSGFGEGMAKRFAKGG---AKVVIVDRDKA------GAERVA---------G---EIGDAALAVAADIS 65 (261)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH---------H---HHCTTEEEEECCTT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCCHH------HHHHHH---------H---HhCCceEEEEecCC
Confidence 478999999999999999999999998 78999998642 222111 1 11247899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhcC-------Cc
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKMK-------KL 353 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~~-------~~ 353 (851)
+++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++...- ..
T Consensus 66 ~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~ 139 (261)
T 3n74_A 66 KEA------DVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQE 139 (261)
T ss_dssp SHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCC
Confidence 876 6665554 78999999997642 24566789999999999998886431 13
Q ss_pred eEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----
Q psy11859 354 VAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----- 428 (851)
Q Consensus 354 ~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----- 428 (851)
.++|++||..+... .|. ...|+.||+..|.+++.++.
T Consensus 140 ~~iv~isS~~~~~~----------~~~----------------------------~~~Y~asKaa~~~~~~~la~e~~~~ 181 (261)
T 3n74_A 140 CVILNVASTGAGRP----------RPN----------------------------LAWYNATKGWVVSVTKALAIELAPA 181 (261)
T ss_dssp EEEEEECCTTTTSC----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred eEEEEeCchhhcCC----------CCC----------------------------ccHHHHHHHHHHHHHHHHHHHhhhc
Confidence 46999999644321 111 13499999999998876543
Q ss_pred CCCEEEEecccccCCCC
Q psy11859 429 KLPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 429 ~l~~~ivRp~~V~G~~~ 445 (851)
++.+.+++||.|.++..
T Consensus 182 gi~v~~v~PG~v~t~~~ 198 (261)
T 3n74_A 182 KIRVVALNPVAGETPLL 198 (261)
T ss_dssp TEEEEEEEEC-------
T ss_pred CcEEEEEecCcccChhh
Confidence 89999999999988753
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=158.75 Aligned_cols=173 Identities=14% Similarity=0.169 Sum_probs=127.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCC------CHHHHHHHHhcChhhHHHhhhCcccCCCeEE
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGL------TPKARLAEFSKLPVFERLRKECPAQLSRLHI 289 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~------~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~ 289 (851)
++||+||||||+|+||+++++.|++.| .+|++++|..... ...+++.+.. +.+. ....++.+
T Consensus 44 l~gk~~lVTGas~GIG~aia~~la~~G---~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~~ 111 (317)
T 3oec_A 44 LQGKVAFITGAARGQGRTHAVRLAQDG---ADIVAIDLCRQQPNLDYAQGSPEELKETV-----RLVE----EQGRRIIA 111 (317)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEECCCCCTTCCSCCCCHHHHHHHH-----HHHH----HTTCCEEE
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC---CeEEEEecccccccccccccCHHHHHHHH-----HHHH----hcCCeEEE
Confidence 678999999999999999999999998 7888888763321 1123332221 1111 12347899
Q ss_pred EEcCCCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc----C
Q psy11859 290 IEGDILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM----K 351 (851)
Q Consensus 290 v~gDi~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~ 351 (851)
+.+|++|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... +
T Consensus 112 ~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~ 185 (317)
T 3oec_A 112 RQADVRDLA------SLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERG 185 (317)
T ss_dssp EECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTC
T ss_pred EECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC
Confidence 999999886 6665554 79999999997643 2457788999999999999988542 2
Q ss_pred CceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC---
Q psy11859 352 KLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--- 428 (851)
Q Consensus 352 ~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--- 428 (851)
.-.++|++||..+... .|. ...|+.||+..+.+.+.++.
T Consensus 186 ~~g~Iv~isS~~~~~~----------~~~----------------------------~~~Y~asKaa~~~l~~~la~e~~ 227 (317)
T 3oec_A 186 QGGSVIFVSSTVGLRG----------APG----------------------------QSHYAASKHGVQGLMLSLANEVG 227 (317)
T ss_dssp SCEEEEEECCGGGSSC----------CTT----------------------------BHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCEEEEECcHHhcCC----------CCC----------------------------CcchHHHHHHHHHHHHHHHHHHh
Confidence 2467999999755321 111 13499999999988876543
Q ss_pred --CCCEEEEecccccCCC
Q psy11859 429 --KLPVVIVRPSIVLPSF 444 (851)
Q Consensus 429 --~l~~~ivRp~~V~G~~ 444 (851)
++.+.+|+||.|.++.
T Consensus 228 ~~gI~vn~v~PG~v~T~~ 245 (317)
T 3oec_A 228 RHNIRVNSVNPGAVNTEM 245 (317)
T ss_dssp GGTEEEEEEEECSBSSHH
T ss_pred hcCeEEEEEecCcccCcc
Confidence 8999999999998864
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=151.51 Aligned_cols=163 Identities=13% Similarity=0.091 Sum_probs=121.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.++. ++ . .+.++.+|++
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~G---~~V~~~~r~~~------~~~~~~---------~~---~--~~~~~~~D~~ 59 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKEG---ARLVACDIEEG------PLREAA---------EA---V--GAHPVVMDVA 59 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH---------HT---T--TCEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHHH---------HH---c--CCEEEEecCC
Confidence 468999999999999999999999998 78999988632 222211 11 1 2778999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|+
T Consensus 60 ~~~------~~~~~~~~~~~~~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~ 133 (245)
T 1uls_A 60 DPA------SVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVL 133 (245)
T ss_dssp CHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 876 5555543 58999999997542 2456788999999999999988653 23689999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ 433 (851)
+||....+ .|. ...|+.||+..+.+.+..+ . ++.+.
T Consensus 134 isS~~~~~-----------~~~----------------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~ 174 (245)
T 1uls_A 134 TASRVYLG-----------NLG----------------------------QANYAASMAGVVGLTRTLALELGRWGIRVN 174 (245)
T ss_dssp ECCGGGGC-----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred EccchhcC-----------CCC----------------------------chhHHHHHHHHHHHHHHHHHHHhHhCeEEE
Confidence 99964221 111 1249999999888776653 2 89999
Q ss_pred EEecccccCCCCC
Q psy11859 434 IVRPSIVLPSFQE 446 (851)
Q Consensus 434 ivRp~~V~G~~~~ 446 (851)
+++||.|..+...
T Consensus 175 ~v~PG~v~t~~~~ 187 (245)
T 1uls_A 175 TLAPGFIETRMTA 187 (245)
T ss_dssp EEEECSBCCTTTS
T ss_pred EEEeCcCcCcchh
Confidence 9999999877543
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.2e-15 Score=153.94 Aligned_cols=156 Identities=19% Similarity=0.210 Sum_probs=121.5
Q ss_pred CCCEEEEecCccHHHHHHHHHHHH-hCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLR-SCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~-~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++|+||||||+|+||+++++.|++ .+ ..|+++.|..... .+.+.++.+|++
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g---~~v~~~~~~~~~~-------------------------~~~~~~~~~Dv~ 54 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKN---HTVINIDIQQSFS-------------------------AENLKFIKADLT 54 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTT---EEEEEEESSCCCC-------------------------CTTEEEEECCTT
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCC---cEEEEeccccccc-------------------------cccceEEecCcC
Confidence 578999999999999999999998 55 7888888875421 136789999999
Q ss_pred CCcCCCCHHHHHHHhc-----CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEeeee
Q psy11859 296 QANLGIKDSDLLMLQE-----EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKMK-KLVAFIHFSTA 362 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-----~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~-~~~~fV~vSTa 362 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++...- .-.++|++||.
T Consensus 55 ~~~------~v~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~ 128 (244)
T 4e4y_A 55 KQQ------DITNVLDIIKNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSD 128 (244)
T ss_dssp CHH------HHHHHHHHTTTCCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCG
T ss_pred CHH------HHHHHHHHHHhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCH
Confidence 886 6666655 78999999997532 24567889999999999999987542 11379999996
Q ss_pred eeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEec
Q psy11859 363 FCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVRP 437 (851)
Q Consensus 363 ~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivRp 437 (851)
.+... .|. ...|+.||+..|.+.+.++. ++.+.+++|
T Consensus 129 ~~~~~----------~~~----------------------------~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~P 170 (244)
T 4e4y_A 129 QCFIA----------KPN----------------------------SFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCP 170 (244)
T ss_dssp GGTCC----------CTT----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEE
T ss_pred HHccC----------CCC----------------------------CchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEec
Confidence 55321 111 12499999999998876643 899999999
Q ss_pred ccccCCC
Q psy11859 438 SIVLPSF 444 (851)
Q Consensus 438 ~~V~G~~ 444 (851)
|.|.++.
T Consensus 171 G~v~T~~ 177 (244)
T 4e4y_A 171 GTVDTDL 177 (244)
T ss_dssp SCBCCHH
T ss_pred CccCchh
Confidence 9998764
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.1e-15 Score=156.74 Aligned_cols=157 Identities=21% Similarity=0.216 Sum_probs=119.1
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
.+++|+||||||+|+||++++++|++.| .+|+++.|..... +.+.++.+|+
T Consensus 18 ~l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~--------------------------~~~~~~~~Dl 68 (253)
T 2nm0_A 18 SHMSRSVLVTGGNRGIGLAIARAFADAG---DKVAITYRSGEPP--------------------------EGFLAVKCDI 68 (253)
T ss_dssp --CCCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSSCCC--------------------------TTSEEEECCT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCChHhh--------------------------ccceEEEecC
Confidence 3578999999999999999999999998 7899999865431 1367899999
Q ss_pred CCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEE
Q psy11859 295 LQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFI 357 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV 357 (851)
+|++ ++..+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 69 ~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv 142 (253)
T 2nm0_A 69 TDTE------QVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVV 142 (253)
T ss_dssp TSHH------HHHHHHHHHHHHTCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 9886 6655543 57999999997542 2456788999999999999987642 1367999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~ 432 (851)
++||..+.... | . ...|+.||+..|.+.+.++ . ++.+
T Consensus 143 ~isS~~~~~~~----------~--~--------------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v 184 (253)
T 2nm0_A 143 LISSVVGLLGS----------A--G--------------------------QANYAASKAGLVGFARSLARELGSRNITF 184 (253)
T ss_dssp EECCCCCCCCH----------H--H--------------------------HHHHHHHHHHHHHHHHHHHHHHCSSSEEE
T ss_pred EECchhhCCCC----------C--C--------------------------cHHHHHHHHHHHHHHHHHHHHhhhcCeEE
Confidence 99996543210 0 0 1249999999998887653 2 8999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
.+++||.|..+.
T Consensus 185 n~v~PG~v~T~~ 196 (253)
T 2nm0_A 185 NVVAPGFVDTDM 196 (253)
T ss_dssp EEEEECSBCC--
T ss_pred EEEEeCcCcCcc
Confidence 999999987664
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.4e-15 Score=158.79 Aligned_cols=213 Identities=11% Similarity=0.022 Sum_probs=141.0
Q ss_pred hcCCCEEEEecCccH--HHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 215 WYAGRSVLVTGGTGF--MGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 215 ~~~~k~VlVTGatGF--IG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
-++||+||||||+|+ ||+++++.|++.| .+|+++.|... ..+.+.++. ++ ..++.++.+
T Consensus 28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G---~~V~~~~r~~~---~~~~~~~~~---------~~----~~~~~~~~~ 88 (293)
T 3grk_A 28 LLQGKRGLILGVANNRSIAWGIAKAAREAG---AELAFTYQGDA---LKKRVEPLA---------EE----LGAFVAGHC 88 (293)
T ss_dssp TTTTCEEEEECCCSSSSHHHHHHHHHHHTT---CEEEEEECSHH---HHHHHHHHH---------HH----HTCEEEEEC
T ss_pred cCCCCEEEEEcCCCCCcHHHHHHHHHHHCC---CEEEEEcCCHH---HHHHHHHHH---------Hh----cCCceEEEC
Confidence 478999999999999 9999999999998 67888888632 122222211 11 136889999
Q ss_pred CCCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-----------chhHHHHHHHHHHHHHHHHHHHHhc-CCc
Q psy11859 293 DILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-----------EAELKENVAANTRGTQRLLDIALKM-KKL 353 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-----------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~ 353 (851)
|++|++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++... ..-
T Consensus 89 Dv~d~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~ 162 (293)
T 3grk_A 89 DVADAA------SIDAVFETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADG 162 (293)
T ss_dssp CTTCHH------HHHHHHHHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTC
T ss_pred CCCCHH------HHHHHHHHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 999986 6665554 78999999997641 2456788999999999999998763 224
Q ss_pred eEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----
Q psy11859 354 VAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----- 428 (851)
Q Consensus 354 ~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----- 428 (851)
.++|++||..+... .... ..|+.||+..+.+.+.++.
T Consensus 163 g~Iv~isS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~l~~~la~e~~~~ 204 (293)
T 3grk_A 163 GSILTLTYYGAEKV---------MPNY-----------------------------NVMGVAKAALEASVKYLAVDLGPQ 204 (293)
T ss_dssp EEEEEEECGGGTSB---------CTTT-----------------------------THHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CEEEEEeehhhccC---------CCch-----------------------------HHHHHHHHHHHHHHHHHHHHHhHh
Confidence 68999999655321 1112 3499999999988876543
Q ss_pred CCCEEEEecccccCCCCCCc---hhHhhhhcCCceE-EEEcccCceeEEEeecC----CCCccEEEEeCC
Q psy11859 429 KLPVVIVRPSIVLPSFQEPV---PGWVDSLNGPVGV-LVASGKGVVRSMILNDL----STETQVFNISSN 490 (851)
Q Consensus 429 ~l~~~ivRp~~V~G~~~~p~---p~~i~~~~~~~~~-~~~~g~~v~~~~~~~~~----~~~~~iyni~~~ 490 (851)
++.+.+++||.|..+..... +.+.+.+....+. -++...+++.++..... ...|+++++++|
T Consensus 205 gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 274 (293)
T 3grk_A 205 NIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAPLRRTVTIDEVGDVGLYFLSDLSRSVTGEVHHADSG 274 (293)
T ss_dssp TEEEEEEEECCCCC------CCHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCEEEEEecCCCcchhhhcccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCccccCCcceEEEECCC
Confidence 89999999999998754432 2222221111000 01122344444322111 346788999887
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-15 Score=157.40 Aligned_cols=164 Identities=15% Similarity=0.171 Sum_probs=122.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||+++++.|++.| .+|++++|... ++.+.. + ....++.++.+|++
T Consensus 4 l~gk~vlVTGas~gIG~a~a~~l~~~G---~~V~~~~r~~~------~~~~~~---------~---~~~~~~~~~~~Dv~ 62 (247)
T 3rwb_A 4 LAGKTALVTGAAQGIGKAIAARLAADG---ATVIVSDINAE------GAKAAA---------A---SIGKKARAIAADIS 62 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEECSCHH------HHHHHH---------H---HHCTTEEECCCCTT
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHHH---------H---HhCCceEEEEcCCC
Confidence 578999999999999999999999998 68888888642 222111 0 01247889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHH----hcCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIAL----KMKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV 357 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++. +.+...++|
T Consensus 63 ~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv 136 (247)
T 3rwb_A 63 DPG------SVKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVI 136 (247)
T ss_dssp CHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CHH------HHHHHHHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 886 6666554 79999999997643 24567889999999999998853 333357999
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~ 432 (851)
++||..+... ..+. ..|+.||+..+.+.+.++ . ++.+
T Consensus 137 ~isS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~~~~~la~e~~~~gi~v 178 (247)
T 3rwb_A 137 SIASNTFFAG---------TPNM-----------------------------AAYVAAKGGVIGFTRALATELGKYNITA 178 (247)
T ss_dssp EECCTHHHHT---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECchhhccC---------CCCc-----------------------------hhhHHHHHHHHHHHHHHHHHhhhcCeEE
Confidence 9999644321 1111 349999988888776654 2 8999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
.+++||.|..+.
T Consensus 179 n~v~PG~v~t~~ 190 (247)
T 3rwb_A 179 NAVTPGLIESDG 190 (247)
T ss_dssp EEEEECSBCCHH
T ss_pred EEEeeCcCcCcc
Confidence 999999998763
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.3e-15 Score=157.82 Aligned_cols=168 Identities=16% Similarity=0.142 Sum_probs=120.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|.... .+.+ .+.+.+..+ ..++.++.+|++
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~--------~~~l~~~~~--~~~~~~~~~D~~ 68 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKG---AKVALVDWNLEA---GVQC--------KAALHEQFE--PQKTLFIQCDVA 68 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHH--------HHHHTTTSC--GGGEEEEECCTT
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCC---CEEEEEECCHHH---HHHH--------HHHHHhhcC--CCceEEEecCCC
Confidence 568999999999999999999999998 789999986421 1111 111111110 136889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHH----hcC--CceEEEEeeee
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIAL----KMK--KLVAFIHFSTA 362 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~----~~~--~~~~fV~vSTa 362 (851)
|++ ++..+++ ++|+|||+||... .+.++..+++|+.|+..+.+++. +.+ ...++|++||.
T Consensus 69 ~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~ 141 (267)
T 2gdz_A 69 DQQ------QLRDTFRKVVDHFGRLDILVNNAGVNN-EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSL 141 (267)
T ss_dssp SHH------HHHHHHHHHHHHHSCCCEEEECCCCCC-SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCC-hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCc
Confidence 876 6665544 5799999999764 45678889999997766555443 332 15799999997
Q ss_pred eeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHH------hC-CCCEEEE
Q psy11859 363 FCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY------KT-KLPVVIV 435 (851)
Q Consensus 363 ~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~------~~-~l~~~iv 435 (851)
.++.. .|.. ..|+.||+..|.+++.+ .. ++++.++
T Consensus 142 ~~~~~----------~~~~----------------------------~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v 183 (267)
T 2gdz_A 142 AGLMP----------VAQQ----------------------------PVYCASKHGIVGFTRSAALAANLMNSGVRLNAI 183 (267)
T ss_dssp GGTSC----------CTTC----------------------------HHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred cccCC----------CCCC----------------------------chHHHHHHHHHHHHHHHHHHHHhccCCcEEEEE
Confidence 66432 1111 24999999999988753 22 8999999
Q ss_pred ecccccCCC
Q psy11859 436 RPSIVLPSF 444 (851)
Q Consensus 436 Rp~~V~G~~ 444 (851)
+||.|.++.
T Consensus 184 ~Pg~v~t~~ 192 (267)
T 2gdz_A 184 CPGFVNTAI 192 (267)
T ss_dssp EESCBSSHH
T ss_pred ecCcCcchh
Confidence 999998763
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-15 Score=163.96 Aligned_cols=218 Identities=16% Similarity=0.100 Sum_probs=141.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEe-cCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILC-RAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~-R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
+++|+||||||+|+||+++++.|++.| .+|++++ |... ++.++ .+.+... ...++.++.+|+
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G---~~Vv~~~~r~~~------~~~~~-----~~~l~~~---~~~~~~~~~~Dl 106 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEG---YAVCLHYHRSAA------EANAL-----SATLNAR---RPNSAITVQADL 106 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHH------HHHHH-----HHHHHHH---STTCEEEEECCC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEcCCCHH------HHHHH-----HHHHHhh---cCCeEEEEEeeC
Confidence 578999999999999999999999998 6889988 7532 22211 1112111 124789999999
Q ss_pred CCCcCCCC------------HHHHHHHh-------cCccEEEEccccCCc---------------------chhHHHHHH
Q psy11859 295 LQANLGIK------------DSDLLMLQ-------EEVSVVFNGAASLKL---------------------EAELKENVA 334 (851)
Q Consensus 295 ~~~~lgls------------~~~~~~~~-------~~vd~ViH~AA~~~~---------------------~~~~~~~~~ 334 (851)
++++ ++. ..++..++ .++|+|||+||.... .+.+...++
T Consensus 107 ~d~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 185 (328)
T 2qhx_A 107 SNVA-TAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFG 185 (328)
T ss_dssp SSSC-BCC-------CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHH
T ss_pred CCch-hccccccccccccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHH
Confidence 9875 000 00333333 379999999997532 334567899
Q ss_pred HHHHHHHHHHHHHHhc---CC------ceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCccc
Q psy11859 335 ANTRGTQRLLDIALKM---KK------LVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKIL 405 (851)
Q Consensus 335 ~Nv~Gt~~ll~~a~~~---~~------~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (851)
+|+.|+.++++++... .+ ..++|++||..++.. .|.
T Consensus 186 vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~IV~isS~~~~~~----------~~~------------------------- 230 (328)
T 2qhx_A 186 SNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQP----------LLG------------------------- 230 (328)
T ss_dssp HHTHHHHHHHHHHHHHHHHSCGGGSCSCEEEEEECCTTTTSC----------CTT-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcCCCCCcEEEEECchhhccC----------CCC-------------------------
Confidence 9999999999988642 12 478999999654321 111
Q ss_pred CCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEecccccCCCCCCchhHhhhhcCCceE--EEEcccCceeEEEeecC
Q psy11859 406 GPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVRPSIVLPSFQEPVPGWVDSLNGPVGV--LVASGKGVVRSMILNDL 478 (851)
Q Consensus 406 ~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivRp~~V~G~~~~p~p~~i~~~~~~~~~--~~~~g~~v~~~~~~~~~ 478 (851)
...|+.||+..+.+.+.++. ++.+.+|+||.|..+. ..++.+.+.+....+. .++...++++++.....
T Consensus 231 ---~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~-~~~~~~~~~~~~~~p~~~r~~~pedvA~~v~~l~s 306 (328)
T 2qhx_A 231 ---YTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD-DMPPAVWEGHRSKVPLYQRDSSAAEVSDVVIFLCS 306 (328)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCC-CSCHHHHHHHHTTCTTTTSCBCHHHHHHHHHHHHS
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCCc-cccHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHhC
Confidence 13499999999988876543 8999999999999887 4445444433222111 11223344444332211
Q ss_pred ----CCCccEEEEeCC
Q psy11859 479 ----STETQVFNISSN 490 (851)
Q Consensus 479 ----~~~~~iyni~~~ 490 (851)
...|.++++++|
T Consensus 307 ~~~~~itG~~i~vdGG 322 (328)
T 2qhx_A 307 SKAKYITGTCVKVDGG 322 (328)
T ss_dssp GGGTTCCSCEEEESTT
T ss_pred ccccCccCcEEEECCC
Confidence 235778888776
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5e-15 Score=158.30 Aligned_cols=169 Identities=14% Similarity=0.148 Sum_probs=124.6
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
.++||+||||||+|+||+++++.|++.| .+|++++|..... .+...+ +.. ....++.++.+|+
T Consensus 24 ~l~~k~~lVTGas~GIG~aia~~l~~~G---~~V~~~~r~~~~~--~~~~~~---------~~~---~~~~~~~~~~~Dv 86 (277)
T 4fc7_A 24 LLRDKVAFITGGGSGIGFRIAEIFMRHG---CHTVIASRSLPRV--LTAARK---------LAG---ATGRRCLPLSMDV 86 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTTT---CEEEEEESCHHHH--HHHHHH---------HHH---HHSSCEEEEECCT
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHH--HHHHHH---------HHH---hcCCcEEEEEcCC
Confidence 4789999999999999999999999998 6899998864321 111111 111 1124789999999
Q ss_pred CCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEE
Q psy11859 295 LQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFI 357 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV 357 (851)
++++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 87 ~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv 160 (277)
T 4fc7_A 87 RAPP------AVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIV 160 (277)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEE
Confidence 9986 6655544 79999999995432 2456788999999999999988531 1246899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+... .|. ...|+.||+..+.+.+.++. ++.+
T Consensus 161 ~isS~~~~~~----------~~~----------------------------~~~Y~asKaa~~~l~~~la~e~~~~gi~v 202 (277)
T 4fc7_A 161 NITATLGNRG----------QAL----------------------------QVHAGSAKAAVDAMTRHLAVEWGPQNIRV 202 (277)
T ss_dssp EECCSHHHHT----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECchhhCCC----------CCC----------------------------cHHHHHHHHHHHHHHHHHHHHhhhcCeEE
Confidence 9999654321 111 13499999999988876543 8999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
.+++||.|.++.
T Consensus 203 n~v~PG~v~t~~ 214 (277)
T 4fc7_A 203 NSLAPGPISGTE 214 (277)
T ss_dssp EEEEECCBSSSH
T ss_pred EEEEECCEecch
Confidence 999999999863
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=155.58 Aligned_cols=211 Identities=11% Similarity=0.071 Sum_probs=143.8
Q ss_pred cCCCEEEEecCccH--HHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 216 YAGRSVLVTGGTGF--MGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 216 ~~~k~VlVTGatGF--IG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
+++|+||||||+|+ ||++++++|++.| .+|++++|.. ..+.++++ .++ ..++.++.+|
T Consensus 24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G---~~V~~~~r~~----~~~~~~~l---------~~~----~~~~~~~~~D 83 (280)
T 3nrc_A 24 LAGKKILITGLLSNKSIAYGIAKAMHREG---AELAFTYVGQ----FKDRVEKL---------CAE----FNPAAVLPCD 83 (280)
T ss_dssp TTTCEEEECCCCSTTCHHHHHHHHHHHTT---CEEEEEECTT----CHHHHHHH---------HGG----GCCSEEEECC
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHcC---CEEEEeeCch----HHHHHHHH---------HHh----cCCceEEEee
Confidence 57899999999999 9999999999998 6899999976 12333322 111 1358899999
Q ss_pred CCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc------------chhHHHHHHHHHHHHHHHHHHHHhcC--C
Q psy11859 294 ILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL------------EAELKENVAANTRGTQRLLDIALKMK--K 352 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~------------~~~~~~~~~~Nv~Gt~~ll~~a~~~~--~ 352 (851)
+++++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++...- +
T Consensus 84 l~~~~------~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~ 157 (280)
T 3nrc_A 84 VISDQ------EIKDLFVELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNR 157 (280)
T ss_dssp TTCHH------HHHHHHHHHHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT
T ss_pred cCCHH------HHHHHHHHHHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99886 6655543 57999999997642 23456789999999999999987541 2
Q ss_pred ceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----
Q psy11859 353 LVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT---- 428 (851)
Q Consensus 353 ~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~---- 428 (851)
-.++|++||..+... .|. ...|+.||+..+.+++.++.
T Consensus 158 ~g~iv~isS~~~~~~----------~~~----------------------------~~~Y~asKaal~~~~~~la~e~~~ 199 (280)
T 3nrc_A 158 NASMVALTYIGAEKA----------MPS----------------------------YNTMGVAKASLEATVRYTALALGE 199 (280)
T ss_dssp TCEEEEEECGGGTSC----------CTT----------------------------THHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CCeEEEEeccccccC----------CCC----------------------------chhhHHHHHHHHHHHHHHHHHHHH
Confidence 468999999654321 111 13499999999998876542
Q ss_pred -CCCEEEEecccccCCCCCCch---hHhhhhcCCceE-EEEcccCceeEEEeecC----CCCccEEEEeCC
Q psy11859 429 -KLPVVIVRPSIVLPSFQEPVP---GWVDSLNGPVGV-LVASGKGVVRSMILNDL----STETQVFNISSN 490 (851)
Q Consensus 429 -~l~~~ivRp~~V~G~~~~p~p---~~i~~~~~~~~~-~~~~g~~v~~~~~~~~~----~~~~~iyni~~~ 490 (851)
++.+.+++||.|..+.....+ .+.+.+....+. -.+...++++.+..... ...|+++++++|
T Consensus 200 ~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~~~~pedvA~~v~~l~s~~~~~~tG~~i~vdgG 270 (280)
T 3nrc_A 200 DGIKVNAVSAGPIKTLAASGISNFKKMLDYNAMVSPLKKNVDIMEVGNTVAFLCSDMATGITGEVVHVDAG 270 (280)
T ss_dssp GTCEEEEEEECCCCCSGGGGCTTHHHHHHHHHHHSTTCSCCCHHHHHHHHHHTTSGGGTTCCSCEEEESTT
T ss_pred cCcEEEEEeeccccchhhhcCcchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCcccCCcCCcEEEECCC
Confidence 899999999999987654322 222221111000 01223455544332221 246789999887
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=5e-15 Score=158.98 Aligned_cols=168 Identities=14% Similarity=0.161 Sum_probs=120.4
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
.++||+||||||+|+||++++++|++.| .+|++++|... ++.++ .+.+.+. ...++.++.+|+
T Consensus 25 ~~~~k~vlITGasggIG~~la~~l~~~G---~~V~~~~r~~~------~~~~~-----~~~~~~~---~~~~~~~~~~Dl 87 (286)
T 1xu9_A 25 MLQGKKVIVTGASKGIGREMAYHLAKMG---AHVVVTARSKE------TLQKV-----VSHCLEL---GAASAHYIAGTM 87 (286)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHHHH---TCSEEEEEECCT
T ss_pred hcCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHH-----HHHHHHh---CCCceEEEeCCC
Confidence 3678999999999999999999999998 68999998642 22211 1111111 113688999999
Q ss_pred CCCcCCCCHHHHHHHhc-------CccEEEEcc-ccCCc------chhHHHHHHHHHHHHHHHHHHHHhcC--CceEEEE
Q psy11859 295 LQANLGIKDSDLLMLQE-------EVSVVFNGA-ASLKL------EAELKENVAANTRGTQRLLDIALKMK--KLVAFIH 358 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~-------~vd~ViH~A-A~~~~------~~~~~~~~~~Nv~Gt~~ll~~a~~~~--~~~~fV~ 358 (851)
+|++ ++..+++ ++|+|||+| +.... .+.+...+++|+.|+.++++++...- +..++|+
T Consensus 88 ~d~~------~v~~~~~~~~~~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~ 161 (286)
T 1xu9_A 88 EDMT------FAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVV 161 (286)
T ss_dssp TCHH------HHHHHHHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEE
Confidence 9876 5555443 799999994 54322 24556789999999999999886531 1358999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh------C-CCC
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK------T-KLP 431 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~------~-~l~ 431 (851)
+||..+... ..+. ..|+.||+..|.++..++ . ++.
T Consensus 162 isS~~~~~~---------~~~~-----------------------------~~Y~asK~a~~~~~~~l~~e~~~~~~~i~ 203 (286)
T 1xu9_A 162 VSSLAGKVA---------YPMV-----------------------------AAYSASKFALDGFFSSIRKEYSVSRVNVS 203 (286)
T ss_dssp EEEGGGTSC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHTCCCE
T ss_pred ECCcccccC---------CCCc-----------------------------cHHHHHHHHHHHHHHHHHHHHhhcCCCeE
Confidence 999755321 1111 349999999998876542 2 889
Q ss_pred EEEEecccccCC
Q psy11859 432 VVIVRPSIVLPS 443 (851)
Q Consensus 432 ~~ivRp~~V~G~ 443 (851)
+++++||.|..+
T Consensus 204 v~~v~Pg~v~t~ 215 (286)
T 1xu9_A 204 ITLCVLGLIDTE 215 (286)
T ss_dssp EEEEEECCBCCH
T ss_pred EEEeecCccCCh
Confidence 999999988654
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-15 Score=160.09 Aligned_cols=165 Identities=15% Similarity=0.115 Sum_probs=123.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... ++.++ .++ ...++.++.+|++
T Consensus 4 l~~k~vlITGas~gIG~aia~~l~~~G---~~V~~~~r~~~------~~~~~---------~~~---~~~~~~~~~~D~~ 62 (263)
T 2a4k_A 4 LSGKTILVTGAASGIGRAALDLFAREG---ASLVAVDREER------LLAEA---------VAA---LEAEAIAVVADVS 62 (263)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH---------HHT---CCSSEEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH---------HHH---hcCceEEEEcCCC
Confidence 478999999999999999999999998 68999988632 22221 111 1147889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEee
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKMK-KLVAFIHFS 360 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~-~~~~fV~vS 360 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++...- +..++|++|
T Consensus 63 ~~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 136 (263)
T 2a4k_A 63 DPK------AVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTG 136 (263)
T ss_dssp SHH------HHHHHHHHHHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred CHH------HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 876 6665544 57999999997543 23456789999999999999997641 135899999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~iv 435 (851)
|..+++. | . ...|+.||+..+.+.+.++ . ++.+.++
T Consensus 137 S~~~~~~-----------~--~--------------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v 177 (263)
T 2a4k_A 137 SVAGLGA-----------F--G--------------------------LAHYAAGKLGVVGLARTLALELARKGVRVNVL 177 (263)
T ss_dssp CCTTCCH-----------H--H--------------------------HHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEE
T ss_pred cchhcCC-----------C--C--------------------------cHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEE
Confidence 9755410 0 0 1349999998777776543 3 8999999
Q ss_pred ecccccCCCCC
Q psy11859 436 RPSIVLPSFQE 446 (851)
Q Consensus 436 Rp~~V~G~~~~ 446 (851)
|||.|.++...
T Consensus 178 ~PG~v~t~~~~ 188 (263)
T 2a4k_A 178 LPGLIQTPMTA 188 (263)
T ss_dssp EECSBCCGGGT
T ss_pred EeCcCcCchhh
Confidence 99999987543
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=8e-15 Score=155.75 Aligned_cols=225 Identities=12% Similarity=0.075 Sum_probs=146.8
Q ss_pred chhhhcCCCEEEEecCc--cHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeE
Q psy11859 211 DVARWYAGRSVLVTGGT--GFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLH 288 (851)
Q Consensus 211 ~i~~~~~~k~VlVTGat--GFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~ 288 (851)
+....+++|+||||||+ |+||++++++|++.| .+|++++|.... .+.++++ .++. .++.
T Consensus 7 ~~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~~---------~~~~----~~~~ 67 (271)
T 3ek2_A 7 HHMGFLDGKRILLTGLLSNRSIAYGIAKACKREG---AELAFTYVGDRF---KDRITEF---------AAEF----GSEL 67 (271)
T ss_dssp --CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTT---CEEEEEESSGGG---HHHHHHH---------HHHT----TCCC
T ss_pred CCccccCCCEEEEeCCCCCCcHHHHHHHHHHHcC---CCEEEEecchhh---HHHHHHH---------HHHc----CCcE
Confidence 34556889999999999 999999999999998 689999987432 2333222 1121 2578
Q ss_pred EEEcCCCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc------------chhHHHHHHHHHHHHHHHHHHHHh
Q psy11859 289 IIEGDILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL------------EAELKENVAANTRGTQRLLDIALK 349 (851)
Q Consensus 289 ~v~gDi~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~------------~~~~~~~~~~Nv~Gt~~ll~~a~~ 349 (851)
++.+|+++++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++..
T Consensus 68 ~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~ 141 (271)
T 3ek2_A 68 VFPCDVADDA------QIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALP 141 (271)
T ss_dssp EEECCTTCHH------HHHHHHHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGG
T ss_pred EEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999986 6666554 68999999997542 235678899999999999999975
Q ss_pred cC-CceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC
Q psy11859 350 MK-KLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT 428 (851)
Q Consensus 350 ~~-~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~ 428 (851)
.- .-.++|++||..+... ..+. ..|+.||+..+.+++.++.
T Consensus 142 ~~~~~g~iv~isS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~~~~~la~ 183 (271)
T 3ek2_A 142 MLSDDASLLTLSYLGAERA---------IPNY-----------------------------NTMGLAKAALEASVRYLAV 183 (271)
T ss_dssp GEEEEEEEEEEECGGGTSB---------CTTT-----------------------------THHHHHHHHHHHHHHHHHH
T ss_pred HhccCceEEEEeccccccC---------CCCc-----------------------------cchhHHHHHHHHHHHHHHH
Confidence 41 1347999999654321 1112 3499999999998876643
Q ss_pred -----CCCEEEEecccccCCCCCCch---hHhhhhcCCceE-EEEcccCceeEEEeec----CCCCccEEEEeCCCCccc
Q psy11859 429 -----KLPVVIVRPSIVLPSFQEPVP---GWVDSLNGPVGV-LVASGKGVVRSMILND----LSTETQVFNISSNEVEAI 495 (851)
Q Consensus 429 -----~l~~~ivRp~~V~G~~~~p~p---~~i~~~~~~~~~-~~~~g~~v~~~~~~~~----~~~~~~iyni~~~~~~~~ 495 (851)
++.+.+++||.|..+.....+ .+.+.+....+. -.+...++++.+.... ....|+++++++| ..+
T Consensus 184 e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~pedva~~i~~l~s~~~~~~tG~~i~vdgG--~~~ 261 (271)
T 3ek2_A 184 SLGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNSPLKRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSG--FNA 261 (271)
T ss_dssp HHHTTTCEEEEEEECCC-----CCCHHHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSEEEEESTT--GGG
T ss_pred HHHhcCcEEEEEecCcccchhhhcccchHHHHHHHHhcCCcCCCCCHHHHHHHHHHHcCcccCCeeeeEEEECCC--eee
Confidence 899999999999987655432 222221111100 0122344444433221 1346889999988 445
Q ss_pred cHHHH
Q psy11859 496 TWGEI 500 (851)
Q Consensus 496 t~~el 500 (851)
++.++
T Consensus 262 ~~~~~ 266 (271)
T 3ek2_A 262 VVGGM 266 (271)
T ss_dssp BCCCC
T ss_pred ehhhh
Confidence 55444
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.3e-15 Score=159.25 Aligned_cols=164 Identities=18% Similarity=0.113 Sum_probs=120.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... +++++. ++ ...++.++.+|++
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~------~~~~~~---------~~---~~~~~~~~~~Dv~ 84 (272)
T 4dyv_A 26 TGKKIAIVTGAGSGVGRAVAVALAGAG---YGVALAGRRLD------ALQETA---------AE---IGDDALCVPTDVT 84 (272)
T ss_dssp --CCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH---------HH---HTSCCEEEECCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHHH---------HH---hCCCeEEEEecCC
Confidence 578999999999999999999999998 68999988632 222211 01 1247889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhcC---C--ceE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKMK---K--LVA 355 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~~---~--~~~ 355 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++...- + -.+
T Consensus 85 d~~------~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~ 158 (272)
T 4dyv_A 85 DPD------SVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGR 158 (272)
T ss_dssp SHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcE
Confidence 986 6666654 79999999997532 23567889999999999988876431 1 358
Q ss_pred EEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CC
Q psy11859 356 FIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KL 430 (851)
Q Consensus 356 fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l 430 (851)
+|++||..+... ..+. ..|+.||+..+.+++.++. ++
T Consensus 159 IV~isS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~l~~~la~e~~~~gI 200 (272)
T 4dyv_A 159 IINNGSISATSP---------RPYS-----------------------------APYTATKHAITGLTKSTSLDGRVHDI 200 (272)
T ss_dssp EEEECCSSTTSC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred EEEECchhhcCC---------CCCc-----------------------------hHHHHHHHHHHHHHHHHHHHhCccCE
Confidence 999999655321 1111 3499999999998876543 89
Q ss_pred CEEEEecccccCCC
Q psy11859 431 PVVIVRPSIVLPSF 444 (851)
Q Consensus 431 ~~~ivRp~~V~G~~ 444 (851)
.+.+++||.|..+.
T Consensus 201 ~vn~v~PG~v~T~~ 214 (272)
T 4dyv_A 201 ACGQIDIGNADTPM 214 (272)
T ss_dssp EEEEEEEEECC---
T ss_pred EEEEEEECcccChh
Confidence 99999999988764
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=8.6e-15 Score=157.33 Aligned_cols=169 Identities=16% Similarity=0.190 Sum_probs=121.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... +++.++ .+.+... ...++.++.+|++
T Consensus 21 l~~k~~lVTGas~gIG~aia~~L~~~G---~~V~~~~r~~~-----~~~~~~-----~~~l~~~---~~~~~~~~~~Dv~ 84 (288)
T 2x9g_A 21 MEAPAAVVTGAAKRIGRAIAVKLHQTG---YRVVIHYHNSA-----EAAVSL-----ADELNKE---RSNTAVVCQADLT 84 (288)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHHT---CEEEEEESSCH-----HHHHHH-----HHHHHHH---STTCEEEEECCCS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CeEEEEeCCch-----HHHHHH-----HHHHHhh---cCCceEEEEeecC
Confidence 678999999999999999999999998 78999998751 111111 1112111 1247899999999
Q ss_pred C----CcCCCCHHHHHHHhc-------CccEEEEccccCCc-----------------chhHHHHHHHHHHHHHHHHHHH
Q psy11859 296 Q----ANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-----------------EAELKENVAANTRGTQRLLDIA 347 (851)
Q Consensus 296 ~----~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-----------------~~~~~~~~~~Nv~Gt~~ll~~a 347 (851)
+ ++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++
T Consensus 85 ~~~~~~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~ 158 (288)
T 2x9g_A 85 NSNVLPA------SCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSF 158 (288)
T ss_dssp CSTTHHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CccCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHH
Confidence 9 54 5555443 79999999996431 1245577999999999999988
Q ss_pred HhcC---C------ceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHH
Q psy11859 348 LKMK---K------LVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRL 418 (851)
Q Consensus 348 ~~~~---~------~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~ 418 (851)
...- + ..++|++||..++.. ..+. ..|+.||+.
T Consensus 159 ~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------~~~~-----------------------------~~Y~asKaa 200 (288)
T 2x9g_A 159 AQRQKGTNPNCTSSNLSIVNLCDAMVDQP---------CMAF-----------------------------SLYNMGKHA 200 (288)
T ss_dssp HHHC--------CCCEEEEEECCTTTTSC---------CTTC-----------------------------HHHHHHHHH
T ss_pred HHHHhhcCCCCCCCCeEEEEEecccccCC---------CCCC-----------------------------chHHHHHHH
Confidence 6532 1 358999999655321 1111 349999998
Q ss_pred HHHHHHHHh----C-CCCEEEEecccccCCC
Q psy11859 419 TETLVDEYK----T-KLPVVIVRPSIVLPSF 444 (851)
Q Consensus 419 aE~~v~~~~----~-~l~~~ivRp~~V~G~~ 444 (851)
.+.+.+.++ . ++.+.+|+||.|.++.
T Consensus 201 ~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~ 231 (288)
T 2x9g_A 201 LVGLTQSAALELAPYGIRVNGVAPGVSLLPV 231 (288)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEEESSCSCCT
T ss_pred HHHHHHHHHHHhhccCeEEEEEEeccccCcc
Confidence 887776553 2 8999999999999886
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.3e-15 Score=155.73 Aligned_cols=164 Identities=15% Similarity=0.181 Sum_probs=119.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++ |+||||||+|+||++++++|++.| .+|++++|... ++.++ .+.+. .. .++.++.+|++
T Consensus 20 ~~-k~vlVTGas~gIG~aia~~La~~G---~~V~~~~r~~~------~~~~~-----~~~~~----~~-~~~~~~~~Dv~ 79 (272)
T 2nwq_A 20 MS-STLFITGATSGFGEACARRFAEAG---WSLVLTGRREE------RLQAL-----AGELS----AK-TRVLPLTLDVR 79 (272)
T ss_dssp -C-CEEEESSTTTSSHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHT----TT-SCEEEEECCTT
T ss_pred cC-cEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHH-----HHHhh----cC-CcEEEEEcCCC
Confidence 45 899999999999999999999998 78999998632 22211 11111 11 47889999999
Q ss_pred CCcCCCCHHHHHHHhcC-------ccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHh----cCCce-E
Q psy11859 296 QANLGIKDSDLLMLQEE-------VSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALK----MKKLV-A 355 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~-------vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~----~~~~~-~ 355 (851)
|++ ++..+++. +|+|||+||.... .+.++..+++|+.|+.++.+++.. .+ .. +
T Consensus 80 d~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~~ 152 (272)
T 2nwq_A 80 DRA------AMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHG-AGAS 152 (272)
T ss_dssp CHH------HHHHHHHTCCGGGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-TTCE
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcE
Confidence 886 67766654 5999999997532 245678899999998888777753 32 45 9
Q ss_pred EEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CC
Q psy11859 356 FIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KL 430 (851)
Q Consensus 356 fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l 430 (851)
+|++||..+... .|. ...|+.||+..|.+.+.++. ++
T Consensus 153 IV~isS~~~~~~----------~~~----------------------------~~~Y~asKaa~~~l~~~la~el~~~gI 194 (272)
T 2nwq_A 153 IVNLGSVAGKWP----------YPG----------------------------SHVYGGTKAFVEQFSLNLRCDLQGTGV 194 (272)
T ss_dssp EEEECCGGGTSC----------CTT----------------------------CHHHHHHHHHHHHHHHHHHTTCTTSCC
T ss_pred EEEeCCchhccC----------CCC----------------------------CchHHHHHHHHHHHHHHHHHHhCccCe
Confidence 999999755321 111 13499999999999987753 79
Q ss_pred CEEEEecccccCCC
Q psy11859 431 PVVIVRPSIVLPSF 444 (851)
Q Consensus 431 ~~~ivRp~~V~G~~ 444 (851)
++.+++||.|.++.
T Consensus 195 rvn~v~PG~v~T~~ 208 (272)
T 2nwq_A 195 RVTNLEPGLCESEF 208 (272)
T ss_dssp EEEEEEECSBC---
T ss_pred EEEEEEcCCCcCcc
Confidence 99999999998763
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.58 E-value=7.1e-15 Score=153.16 Aligned_cols=162 Identities=15% Similarity=0.162 Sum_probs=119.4
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++|+||||||+|+||++++++|++.| .+|++++|... +++++. +.+ ..++.++.+|++|
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G---~~V~~~~r~~~------~~~~~~-----~~~-------~~~~~~~~~D~~~ 60 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERG---HQVSMMGRRYQ------RLQQQE-----LLL-------GNAVIGIVADLAH 60 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH-----HHH-------GGGEEEEECCTTS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHHH-----HHh-------cCCceEEECCCCC
Confidence 57899999999999999999999998 78999998642 222111 111 1258899999998
Q ss_pred CcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEee
Q psy11859 297 ANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM--KKLVAFIHFS 360 (851)
Q Consensus 297 ~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~--~~~~~fV~vS 360 (851)
++ ++..+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+-.++|++|
T Consensus 61 ~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~is 134 (235)
T 3l6e_A 61 HE------DVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVL 134 (235)
T ss_dssp HH------HHHHHHHHHHHHHCSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred HH------HHHHHHHHHHHhcCCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 76 6655543 68999999997542 2456788999999999999988542 1123899999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~iv 435 (851)
|..+... .|. ...|+.||+..+.+.+.++. ++.+.++
T Consensus 135 S~~~~~~----------~~~----------------------------~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v 176 (235)
T 3l6e_A 135 SSAAQVG----------KAN----------------------------ESLYCASKWGMRGFLESLRAELKDSPLRLVNL 176 (235)
T ss_dssp CEECCSS----------CSS----------------------------HHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEE
T ss_pred CHHhcCC----------CCC----------------------------CcHHHHHHHHHHHHHHHHHHHhhccCCEEEEE
Confidence 9765421 111 13499999999998877643 7899999
Q ss_pred ecccccCC
Q psy11859 436 RPSIVLPS 443 (851)
Q Consensus 436 Rp~~V~G~ 443 (851)
+||.|-.+
T Consensus 177 ~PG~v~T~ 184 (235)
T 3l6e_A 177 YPSGIRSE 184 (235)
T ss_dssp EEEEECCC
T ss_pred eCCCccCc
Confidence 99988665
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=151.39 Aligned_cols=167 Identities=20% Similarity=0.230 Sum_probs=121.3
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++|+||||||+|+||++++++|++.| .+|+++.|... +++++. +.+.+ ....++.++.+|+++
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G---~~V~~~~r~~~------~~~~~~-----~~~~~---~~~~~~~~~~~D~~~ 63 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDG---YALALGARSVD------RLEKIA-----HELMQ---EQGVEVFYHHLDVSK 63 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH-----HHHHH---HHCCCEEEEECCTTC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHHH-----HHHHh---hcCCeEEEEEeccCC
Confidence 46899999999999999999999998 67999988642 222111 11111 123478999999999
Q ss_pred CcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEee
Q psy11859 297 ANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM--KKLVAFIHFS 360 (851)
Q Consensus 297 ~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~--~~~~~fV~vS 360 (851)
++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++... .+-.++|.+|
T Consensus 64 ~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~s 137 (235)
T 3l77_A 64 AE------SVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTT 137 (235)
T ss_dssp HH------HHHHHCC-HHHHHSSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HH------HHHHHHHHHHHhcCCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEe
Confidence 86 7777665 78999999997543 2456788999999999999998642 1124566666
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh---CCCCEEEEec
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK---TKLPVVIVRP 437 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~---~~l~~~ivRp 437 (851)
|..+.. +.|. ...|+.||+..+.+++.+. .++.+.+++|
T Consensus 138 S~~~~~----------~~~~----------------------------~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~P 179 (235)
T 3l77_A 138 SDVSAR----------LIPY----------------------------GGGYVSTKWAARALVRTFQIENPDVRFFELRP 179 (235)
T ss_dssp CGGGSS----------CCTT----------------------------CHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred cchhcc----------cCCC----------------------------cchHHHHHHHHHHHHHHHhhcCCCeEEEEEeC
Confidence 643321 1111 1349999999999988763 2899999999
Q ss_pred ccccCCC
Q psy11859 438 SIVLPSF 444 (851)
Q Consensus 438 ~~V~G~~ 444 (851)
|.|-.+.
T Consensus 180 G~v~T~~ 186 (235)
T 3l77_A 180 GAVDTYF 186 (235)
T ss_dssp CSBSSST
T ss_pred Ccccccc
Confidence 9987654
|
| >1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C | Back alignment and structure |
|---|
Probab=99.58 E-value=6.3e-16 Score=135.12 Aligned_cols=87 Identities=30% Similarity=0.514 Sum_probs=80.9
Q ss_pred ccceeec--CCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchh
Q psy11859 689 FVIFTQI--LPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDE 766 (851)
Q Consensus 689 ~~~~~c~--~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~ 766 (851)
++||.|. .|++.|.....|..|+++|.+++||.| +.|++.|.+...|..|+++|++++||.|. .|++.|.+...
T Consensus 2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~ 77 (90)
T 1a1h_A 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFACD--ICGRKFARSDE 77 (90)
T ss_dssp -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEEC--TTTCCEESCHHHHHHHHHHHHCCCCEECT--TTCCEESSHHH
T ss_pred CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccC--CCCCcccCCHHHHHHHHHHcCCCCCccCC--CCCchhCCHHH
Confidence 5789998 699999999999999999999999999 88999999999999999999999999998 89999999999
Q ss_pred HHHhhhhcCCCCC
Q psy11859 767 LSRHRRSHFGIKP 779 (851)
Q Consensus 767 L~~H~r~H~gekp 779 (851)
|.+|+++|+++++
T Consensus 78 l~~H~~~H~~~k~ 90 (90)
T 1a1h_A 78 RKRHTKIHLRQKD 90 (90)
T ss_dssp HHHHHGGGGC---
T ss_pred HHHHHHHhcccCC
Confidence 9999999999864
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=153.51 Aligned_cols=164 Identities=16% Similarity=0.196 Sum_probs=120.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... +...+ ...++.++.+|++
T Consensus 7 l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~-----~~~~~----------------~~~~~~~~~~D~~ 62 (257)
T 3tl3_A 7 IRDAVAVVTGGASGLGLATTKRLLDAG---AQVVVLDIRGE-----DVVAD----------------LGDRARFAAADVT 62 (257)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHHT---CEEEEEESSCH-----HHHHH----------------TCTTEEEEECCTT
T ss_pred ecCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCchH-----HHHHh----------------cCCceEEEECCCC
Confidence 578999999999999999999999999 78999988321 11111 1247899999999
Q ss_pred CCcCCCCHHHHHHHhc------CccEEEEccccCCc-----------chhHHHHHHHHHHHHHHHHHHHHhc--------
Q psy11859 296 QANLGIKDSDLLMLQE------EVSVVFNGAASLKL-----------EAELKENVAANTRGTQRLLDIALKM-------- 350 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~------~vd~ViH~AA~~~~-----------~~~~~~~~~~Nv~Gt~~ll~~a~~~-------- 350 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++...
T Consensus 63 ~~~------~v~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~ 136 (257)
T 3tl3_A 63 DEA------AVASALDLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVG 136 (257)
T ss_dssp CHH------HHHHHHHHHHHHSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC-
T ss_pred CHH------HHHHHHHHHHHhCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccc
Confidence 886 6665554 89999999996531 2456788999999999999998753
Q ss_pred ---CCceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh
Q psy11859 351 ---KKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK 427 (851)
Q Consensus 351 ---~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~ 427 (851)
..-.++|++||..+.... | . ...|+.||+..+.+.+.++
T Consensus 137 ~~~~~~g~iv~isS~~~~~~~----------~--~--------------------------~~~Y~asKaa~~~~~~~la 178 (257)
T 3tl3_A 137 PNAEERGVIINTASVAAFDGQ----------I--G--------------------------QAAYSASKGGVVGMTLPIA 178 (257)
T ss_dssp -CCCCSEEEEEECCCC--CCH----------H--H--------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcchhhcCCC----------C--C--------------------------CccHHHHHHHHHHHHHHHH
Confidence 123589999997554211 0 1 1349999998888776553
Q ss_pred ----C-CCCEEEEecccccCCCCCC
Q psy11859 428 ----T-KLPVVIVRPSIVLPSFQEP 447 (851)
Q Consensus 428 ----~-~l~~~ivRp~~V~G~~~~p 447 (851)
. ++.+.+++||.|..+....
T Consensus 179 ~e~~~~gI~vn~v~PG~v~T~~~~~ 203 (257)
T 3tl3_A 179 RDLASHRIRVMTIAPGLFDTPLLAS 203 (257)
T ss_dssp HHHGGGTEEEEEEEECSBCCTTC--
T ss_pred HHhcccCcEEEEEEecCccChhhhh
Confidence 3 8999999999998875443
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=167.80 Aligned_cols=170 Identities=23% Similarity=0.312 Sum_probs=127.6
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
.+-.+++||||||||+||.++++.|++.|. ..|+++.|........+.+.+ .|. ....++.++.+|
T Consensus 222 ~~~~~~~vLITGgtGgIG~~la~~La~~G~--~~vvl~~R~~~~~~~~~~l~~--------~l~----~~g~~v~~~~~D 287 (486)
T 2fr1_A 222 EWKPTGTVLVTGGTGGVGGQIARWLARRGA--PHLLLVSRSGPDADGAGELVA--------ELE----ALGARTTVAACD 287 (486)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHHTC--SEEEEEESSGGGSTTHHHHHH--------HHH----HTTCEEEEEECC
T ss_pred CcCCCCEEEEECCCCHHHHHHHHHHHHcCC--CEEEEEcCCCCCcHHHHHHHH--------HHH----hcCCEEEEEEeC
Confidence 456789999999999999999999999983 468999997643222222211 111 112478999999
Q ss_pred CCCCcCCCCHHHHHHHhcC------ccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEee
Q psy11859 294 ILQANLGIKDSDLLMLQEE------VSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFS 360 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~~------vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vS 360 (851)
++|++ ++..+++. +|+|||+|+.... .+.+...+++|+.|+.+|++++...+ +.+||++|
T Consensus 288 v~d~~------~v~~~~~~i~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~-~~~~V~~S 360 (486)
T 2fr1_A 288 VTDRE------SVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELD-LTAFVLFS 360 (486)
T ss_dssp TTCHH------HHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSC-CSEEEEEE
T ss_pred CCCHH------HHHHHHHHHHhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCC-CCEEEEEc
Confidence 99986 77777765 4999999997643 23456778999999999999998774 89999999
Q ss_pred eeeee-CCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-CCCEEEEecc
Q psy11859 361 TAFCH-PDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-KLPVVIVRPS 438 (851)
Q Consensus 361 Ta~~~-~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-~l~~~ivRp~ 438 (851)
|+.+. +. ... ..|+.+|+..+.+...... ++++++++||
T Consensus 361 S~a~~~g~----------~g~-----------------------------~~Yaaaka~l~~la~~~~~~gi~v~~i~pG 401 (486)
T 2fr1_A 361 SFASAFGA----------PGL-----------------------------GGYAPGNAYLDGLAQQRRSDGLPATAVAWG 401 (486)
T ss_dssp EHHHHTCC----------TTC-----------------------------TTTHHHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred ChHhcCCC----------CCC-----------------------------HHHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 96442 21 111 3499999999998877654 9999999999
Q ss_pred cccCC
Q psy11859 439 IVLPS 443 (851)
Q Consensus 439 ~V~G~ 443 (851)
.+.++
T Consensus 402 ~~~~~ 406 (486)
T 2fr1_A 402 TWAGS 406 (486)
T ss_dssp CBC--
T ss_pred eeCCC
Confidence 98765
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.58 E-value=9e-15 Score=155.11 Aligned_cols=167 Identities=17% Similarity=0.248 Sum_probs=120.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||+++++.|++.| .+|++++|.... +.++ .+.+. ....++.++.+|++
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~------~~~~-----~~~l~----~~~~~~~~~~~Dv~ 63 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAG---AKILLGARRQAR------IEAI-----ATEIR----DAGGTALAQVLDVT 63 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESSHHH------HHHH-----HHHHH----HTTCEEEEEECCTT
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCC---CEEEEEECCHHH------HHHH-----HHHHH----hcCCcEEEEEcCCC
Confidence 468999999999999999999999998 689999886422 2111 11111 12347889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++.+++... .+..++|+
T Consensus 64 d~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~ 137 (264)
T 3tfo_A 64 DRH------SVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIIN 137 (264)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 886 6555543 79999999997643 2456788999999999998887542 13578999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC---CCCEEEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT---KLPVVIV 435 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~---~l~~~iv 435 (851)
+||..+... .|. ...|+.||+..+.+.+.++. ++.+..|
T Consensus 138 isS~~~~~~----------~~~----------------------------~~~Y~asKaal~~l~~~la~e~~gIrvn~v 179 (264)
T 3tfo_A 138 IGSIGALSV----------VPT----------------------------AAVYCATKFAVRAISDGLRQESTNIRVTCV 179 (264)
T ss_dssp ECCGGGTCC----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred EcCHHHccc----------CCC----------------------------ChhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 999755321 111 13499999999998876653 7889999
Q ss_pred ecccccCCC
Q psy11859 436 RPSIVLPSF 444 (851)
Q Consensus 436 Rp~~V~G~~ 444 (851)
+||.|..+.
T Consensus 180 ~PG~v~T~~ 188 (264)
T 3tfo_A 180 NPGVVESEL 188 (264)
T ss_dssp EECCC----
T ss_pred ecCCCcCcc
Confidence 999887653
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.6e-15 Score=155.95 Aligned_cols=168 Identities=20% Similarity=0.260 Sum_probs=123.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||++++++|++.| .+|++++|.... +.+ ..+.+....+ ...+.++.+|++
T Consensus 8 l~~k~~lVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~------~~~-----~~~~l~~~~~--~~~~~~~~~D~~ 71 (267)
T 3t4x_A 8 LKGKTALVTGSTAGIGKAIATSLVAEG---ANVLINGRREEN------VNE-----TIKEIRAQYP--DAILQPVVADLG 71 (267)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSHHH------HHH-----HHHHHHHHCT--TCEEEEEECCTT
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH------HHH-----HHHHHHhhCC--CceEEEEecCCC
Confidence 578999999999999999999999998 789999886432 111 1122222222 236788999999
Q ss_pred CCcCCCCHHHHHHHhc---CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEeeee
Q psy11859 296 QANLGIKDSDLLMLQE---EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHFSTA 362 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~---~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~vSTa 362 (851)
+++ ++..+++ ++|++||+||.... .+.++..+++|+.|+.++.+++... .+..++|++||.
T Consensus 72 ~~~------~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~ 145 (267)
T 3t4x_A 72 TEQ------GCQDVIEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASE 145 (267)
T ss_dssp SHH------HHHHHHHHCCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCG
T ss_pred CHH------HHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcch
Confidence 876 5665554 79999999997543 2456678999999988887776432 236799999997
Q ss_pred eeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEec
Q psy11859 363 FCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVRP 437 (851)
Q Consensus 363 ~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivRp 437 (851)
.+... ..+. ..|+.||+..+.+.+.++. ++.+..+.|
T Consensus 146 ~~~~~---------~~~~-----------------------------~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~P 187 (267)
T 3t4x_A 146 AAIMP---------SQEM-----------------------------AHYSATKTMQLSLSRSLAELTTGTNVTVNTIMP 187 (267)
T ss_dssp GGTSC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEE
T ss_pred hhccC---------CCcc-----------------------------hHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 55321 1112 3499999999999877653 789999999
Q ss_pred ccccCC
Q psy11859 438 SIVLPS 443 (851)
Q Consensus 438 ~~V~G~ 443 (851)
|.|..+
T Consensus 188 G~v~t~ 193 (267)
T 3t4x_A 188 GSTLTE 193 (267)
T ss_dssp CCBCCH
T ss_pred CeecCc
Confidence 999875
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-14 Score=155.10 Aligned_cols=212 Identities=9% Similarity=0.008 Sum_probs=144.6
Q ss_pred cCCCEEEEecCcc--HHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 216 YAGRSVLVTGGTG--FMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 216 ~~~k~VlVTGatG--FIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
++||+||||||+| +||+++++.|++.| .+|++++|.... .+.+.++. +. ..++.++.+|
T Consensus 28 l~~k~vlVTGasg~~GIG~~ia~~la~~G---~~V~~~~r~~~~---~~~~~~~~---------~~----~~~~~~~~~D 88 (296)
T 3k31_A 28 MEGKKGVIIGVANDKSLAWGIAKAVCAQG---AEVALTYLSETF---KKRVDPLA---------ES----LGVKLTVPCD 88 (296)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHHTT---CEEEEEESSGGG---HHHHHHHH---------HH----HTCCEEEECC
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHCC---CEEEEEeCChHH---HHHHHHHH---------Hh----cCCeEEEEcC
Confidence 6789999999998 99999999999998 789999997532 22332221 11 1246789999
Q ss_pred CCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-----------chhHHHHHHHHHHHHHHHHHHHHhcC-Cce
Q psy11859 294 ILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-----------EAELKENVAANTRGTQRLLDIALKMK-KLV 354 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-----------~~~~~~~~~~Nv~Gt~~ll~~a~~~~-~~~ 354 (851)
++|++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++...- .-.
T Consensus 89 v~d~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g 162 (296)
T 3k31_A 89 VSDAE------SVDNMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGG 162 (296)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99986 6665554 68999999997642 23567889999999999999997542 235
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~ 429 (851)
++|++||..+... ..+. ..|+.||+..+.+.+.++. +
T Consensus 163 ~IV~isS~~~~~~---------~~~~-----------------------------~~Y~asKaal~~l~~~la~e~~~~g 204 (296)
T 3k31_A 163 SILTLSYYGAEKV---------VPHY-----------------------------NVMGVCKAALEASVKYLAVDLGKQQ 204 (296)
T ss_dssp EEEEEECGGGTSC---------CTTT-----------------------------THHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEEEEehhhccC---------CCCc-----------------------------hhhHHHHHHHHHHHHHHHHHHhhcC
Confidence 8999999654321 1112 3499999999998876543 8
Q ss_pred CCEEEEecccccCCCCCCchh---HhhhhcCCceE-EEEcccCceeEEEeecC----CCCccEEEEeCC
Q psy11859 430 LPVVIVRPSIVLPSFQEPVPG---WVDSLNGPVGV-LVASGKGVVRSMILNDL----STETQVFNISSN 490 (851)
Q Consensus 430 l~~~ivRp~~V~G~~~~p~p~---~i~~~~~~~~~-~~~~g~~v~~~~~~~~~----~~~~~iyni~~~ 490 (851)
+.+.+|+||.|..+....++. +.+.+....+. -++...++++++..... ...|+++++++|
T Consensus 205 Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG 273 (296)
T 3k31_A 205 IRVNAISAGPVRTLASSGISDFHYILTWNKYNSPLRRNTTLDDVGGAALYLLSDLGRGTTGETVHVDCG 273 (296)
T ss_dssp EEEEEEEECCCCCSSCCSCHHHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cEEEEEEECCCcCchhhcccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCccCCccCCEEEECCC
Confidence 999999999999887655432 12211110000 01223445444332211 346889999888
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=153.64 Aligned_cols=168 Identities=18% Similarity=0.178 Sum_probs=123.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|.||++++++|++.| .+|++++|.... +.+. .+.+....+ ..++.++.+|++
T Consensus 6 l~~k~~lVTGas~GIG~aia~~l~~~G---~~V~~~~r~~~~------~~~~-----~~~l~~~~~--~~~~~~~~~Dv~ 69 (265)
T 3lf2_A 6 LSEAVAVVTGGSSGIGLATVELLLEAG---AAVAFCARDGER------LRAA-----ESALRQRFP--GARLFASVCDVL 69 (265)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESCHHH------HHHH-----HHHHHHHST--TCCEEEEECCTT
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHH------HHHH-----HHHHHHhcC--CceEEEEeCCCC
Confidence 578999999999999999999999998 689999886422 2111 111222111 125899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+-.++|+
T Consensus 70 ~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~ 143 (265)
T 3lf2_A 70 DAL------QVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVC 143 (265)
T ss_dssp CHH------HHHHHHHHHHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Confidence 976 5555443 78999999997543 2456788999999999999998642 23568999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... .|. ...|+.||+..+.+.+.++. ++.+.
T Consensus 144 isS~~~~~~----------~~~----------------------------~~~Y~asKaa~~~l~~~la~e~~~~gi~vn 185 (265)
T 3lf2_A 144 VNSLLASQP----------EPH----------------------------MVATSAARAGVKNLVRSMAFEFAPKGVRVN 185 (265)
T ss_dssp EEEGGGTSC----------CTT----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred ECCcccCCC----------CCC----------------------------chhhHHHHHHHHHHHHHHHHHhcccCeEEE
Confidence 999654321 111 13499999999988876543 89999
Q ss_pred EEecccccCC
Q psy11859 434 IVRPSIVLPS 443 (851)
Q Consensus 434 ivRp~~V~G~ 443 (851)
.++||.|..+
T Consensus 186 ~v~PG~v~t~ 195 (265)
T 3lf2_A 186 GILIGLVESG 195 (265)
T ss_dssp EEEECSBCCH
T ss_pred EEEeCcCcCc
Confidence 9999999875
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-15 Score=159.04 Aligned_cols=179 Identities=10% Similarity=-0.012 Sum_probs=117.3
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+||||||+|+||++++++|++.| .+|++++|...... . .+.+|+++++
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G---~~V~~~~r~~~~~~--------------------------~--~~~~Dl~~~~ 50 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAG---HQIVGIDIRDAEVI--------------------------A--DLSTAEGRKQ 50 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSSSSEE--------------------------C--CTTSHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCchhhc--------------------------c--ccccCCCCHH
Confidence 589999999999999999999998 68999999754310 0 1567888775
Q ss_pred CCCCHHHHHHHhc----CccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEeeeeeeeCCCccc
Q psy11859 299 LGIKDSDLLMLQE----EVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKM---KKLVAFIHFSTAFCHPDQKVL 371 (851)
Q Consensus 299 lgls~~~~~~~~~----~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~vSTa~~~~~~~~i 371 (851)
++..+++ ++|+|||+||......+++..+++|+.|+.++++++... .+..++|++||..++.....
T Consensus 51 ------~v~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~- 123 (257)
T 1fjh_A 51 ------AIADVLAKCSKGMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFD- 123 (257)
T ss_dssp ------HHHHHHTTCTTCCSEEEECCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGG-
T ss_pred ------HHHHHHHHhCCCCCEEEECCCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccc-
Confidence 6666664 469999999987645568899999999999999998632 23579999999876532110
Q ss_pred ccccCCCCCCHHHHHHHHhhccHHHHhhhCCc-ccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEecccccCCCC
Q psy11859 372 EEKLYPSPVSPHDIMRAMEWMDDETIKQLTPK-ILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 372 ~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivRp~~V~G~~~ 445 (851)
+......+ ...+.+........ ........|+.||+..|.+++.++. ++.+.+++||.|.++..
T Consensus 124 -------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~ 193 (257)
T 1fjh_A 124 -------KNPLALAL---EAGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLL 193 (257)
T ss_dssp -------GCTTHHHH---HHTCHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC------
T ss_pred -------cchhhhhh---cccchhhhhhhhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccc
Confidence 00000000 00011111000000 0000124699999999998876542 89999999999988753
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=167.70 Aligned_cols=170 Identities=22% Similarity=0.303 Sum_probs=128.2
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
.+-.+++||||||+|+||.++++.|++.|. ..|+++.|........+.+. +.|. ....++.++.+|
T Consensus 255 ~~~~~~~vLITGgtGgIG~~lA~~La~~G~--~~vvl~~R~~~~~~~~~~l~--------~~l~----~~g~~v~~~~~D 320 (511)
T 2z5l_A 255 SWQPSGTVLITGGMGAIGRRLARRLAAEGA--ERLVLTSRRGPEAPGAAELA--------EELR----GHGCEVVHAACD 320 (511)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHTTC--SEEEEEESSGGGSTTHHHHH--------HHHH----TTTCEEEEEECC
T ss_pred CcCCCCEEEEECCCCHHHHHHHHHHHhCCC--cEEEEEecCCcccHHHHHHH--------HHHH----hcCCEEEEEEeC
Confidence 356789999999999999999999999873 47899999764322222221 1111 122478999999
Q ss_pred CCCCcCCCCHHHHHHHhcC--ccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeee
Q psy11859 294 ILQANLGIKDSDLLMLQEE--VSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFC 364 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~~--vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~ 364 (851)
++|++ ++..++++ +|+|||+||..... +.+...+++|+.|+.+|.+++....++.+||++||+.+
T Consensus 321 vtd~~------~v~~~~~~~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~ 394 (511)
T 2z5l_A 321 VAERD------ALAALVTAYPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTG 394 (511)
T ss_dssp SSCHH------HHHHHHHHSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGG
T ss_pred CCCHH------HHHHHHhcCCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHh
Confidence 99886 77777764 99999999976532 35667899999999999999876634889999999643
Q ss_pred -eCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-CCCEEEEecccccC
Q psy11859 365 -HPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-KLPVVIVRPSIVLP 442 (851)
Q Consensus 365 -~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-~l~~~ivRp~~V~G 442 (851)
++. +. ...|+.+|+..|.++..... ++++++++||.+.+
T Consensus 395 ~~g~-----------~g----------------------------~~~YaaaKa~ld~la~~~~~~gi~v~sv~pG~~~~ 435 (511)
T 2z5l_A 395 TWGN-----------AG----------------------------QGAYAAANAALDALAERRRAAGLPATSVAWGLWGG 435 (511)
T ss_dssp TTCC-----------TT----------------------------BHHHHHHHHHHHHHHHHHHTTTCCCEEEEECCBCS
T ss_pred cCCC-----------CC----------------------------CHHHHHHHHHHHHHHHHHHHcCCcEEEEECCcccC
Confidence 221 11 13499999999999987765 99999999998843
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=150.78 Aligned_cols=156 Identities=13% Similarity=0.011 Sum_probs=118.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
.++|+||||||+|+||++++++|++.| .+|++++|...... ..+.++.+|++
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~-------------------------~~~~~~~~D~~ 56 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARN---WWVASIDVVENEEA-------------------------SASVIVKMTDS 56 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTT---CEEEEEESSCCTTS-------------------------SEEEECCCCSC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCC---CEEEEEeCChhhcc-------------------------CCcEEEEcCCC
Confidence 467899999999999999999999998 78999999764321 13567889999
Q ss_pred CCcCCCCHHHHHHHhc---------CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhcC-CceEEE
Q psy11859 296 QANLGIKDSDLLMLQE---------EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKMK-KLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~---------~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~~-~~~~fV 357 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++...- .-.++|
T Consensus 57 ~~~------~v~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv 130 (241)
T 1dhr_A 57 FTE------QADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLT 130 (241)
T ss_dssp HHH------HHHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CHH------HHHHHHHHHHHHhCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEE
Confidence 876 5555443 79999999996431 23456789999999999999997641 125899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-------CC
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-------KL 430 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-------~l 430 (851)
++||..+... ..+. ..|+.||+..|.+++.++. ++
T Consensus 131 ~isS~~~~~~---------~~~~-----------------------------~~Y~asK~a~~~~~~~la~e~~~~~~gi 172 (241)
T 1dhr_A 131 LAGAKAALDG---------TPGM-----------------------------IGYGMAKGAVHQLCQSLAGKNSGMPSGA 172 (241)
T ss_dssp EECCGGGGSC---------CTTB-----------------------------HHHHHHHHHHHHHHHHHTSTTSSCCTTC
T ss_pred EECCHHHccC---------CCCc-----------------------------hHHHHHHHHHHHHHHHHHHHhccCCCCe
Confidence 9999765431 1111 3499999999999987643 58
Q ss_pred CEEEEecccccCC
Q psy11859 431 PVVIVRPSIVLPS 443 (851)
Q Consensus 431 ~~~ivRp~~V~G~ 443 (851)
.+.+++||.|-.+
T Consensus 173 ~v~~v~PG~v~T~ 185 (241)
T 1dhr_A 173 AAIAVLPVTLDTP 185 (241)
T ss_dssp EEEEEEESCEECH
T ss_pred EEEEEecCcccCc
Confidence 8999999987654
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=152.97 Aligned_cols=164 Identities=23% Similarity=0.282 Sum_probs=123.0
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
||+||||||+|+||++++++|++.|.+ ..|++..|... +++++. ++ ...++.++.+|++|+
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~-~~v~~~~r~~~------~~~~~~---------~~---~~~~~~~~~~Dv~~~ 62 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKD-TVVYGVARSEA------PLKKLK---------EK---YGDRFFYVVGDITED 62 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSS-CEEEEEESCHH------HHHHHH---------HH---HGGGEEEEESCTTSH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCC-eEEEEecCCHH------HHHHHH---------HH---hCCceEEEECCCCCH
Confidence 789999999999999999999998643 47778887632 222211 11 123788999999998
Q ss_pred cCCCCHHHHHHHhc-------CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHH----hcCCceEEEE
Q psy11859 298 NLGIKDSDLLMLQE-------EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIAL----KMKKLVAFIH 358 (851)
Q Consensus 298 ~lgls~~~~~~~~~-------~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV~ 358 (851)
+ ++..+++ ++|++||+||.... .+.++..+++|+.|+.++++++. +.+ .++|+
T Consensus 63 ~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--g~iv~ 134 (254)
T 3kzv_A 63 S------VLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN--GNVVF 134 (254)
T ss_dssp H------HHHHHHHHHHHHHSCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEE
T ss_pred H------HHHHHHHHHHHhcCCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEE
Confidence 6 6665554 78999999997532 24567889999999999999983 332 68999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC---CCCEEEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT---KLPVVIV 435 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~---~l~~~iv 435 (851)
+||..+... ..+. ..|+.||+..+.+.+.++. ++.+..+
T Consensus 135 isS~~~~~~---------~~~~-----------------------------~~Y~asK~a~~~~~~~la~e~~~i~vn~v 176 (254)
T 3kzv_A 135 VSSDACNMY---------FSSW-----------------------------GAYGSSKAALNHFAMTLANEERQVKAIAV 176 (254)
T ss_dssp ECCSCCCCS---------SCCS-----------------------------HHHHHHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred EcCchhccC---------CCCc-----------------------------chHHHHHHHHHHHHHHHHhhccCcEEEEE
Confidence 999655321 1111 2499999999999987764 8999999
Q ss_pred ecccccCCCCC
Q psy11859 436 RPSIVLPSFQE 446 (851)
Q Consensus 436 Rp~~V~G~~~~ 446 (851)
+||.|..+...
T Consensus 177 ~PG~v~t~~~~ 187 (254)
T 3kzv_A 177 APGIVDTDMQV 187 (254)
T ss_dssp ECSSCCCCCSC
T ss_pred eCCcccchhHH
Confidence 99999887543
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=152.36 Aligned_cols=169 Identities=14% Similarity=0.147 Sum_probs=120.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|.... .+.+. +.+....+ ...++.++.+|++
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G---~~V~~~~r~~~~---~~~~~--------~~~~~~~~-~~~~~~~~~~Dv~ 69 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDG---YRVVLIARSKQN---LEKVH--------DEIMRSNK-HVQEPIVLPLDIT 69 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHT---CEEEEEESCHHH---HHHHH--------HHHHHHCT-TSCCCEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHH--------HHHHHhcc-ccCcceEEeccCC
Confidence 578999999999999999999999998 689999986432 11111 11222111 1147889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc---c---hhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEe
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL---E---AELKENVAANTRGTQRLLDIALKM---KKLVAFIHF 359 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~---~---~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~v 359 (851)
|++ ++..+++ ++|+|||+||.... + +.++..+++|+.|+.++++++... .+..++|++
T Consensus 70 ~~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~i 143 (250)
T 3nyw_A 70 DCT------KADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNV 143 (250)
T ss_dssp CHH------HHHHHHHHHHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 876 5555543 68999999997532 1 456788999999999999988431 135799999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..+... ..+. ..|+.||+..+.+.+.++. ++.+..
T Consensus 144 sS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~l~~~la~e~~~~gi~vn~ 185 (250)
T 3nyw_A 144 ASRAAKYG---------FADG-----------------------------GIYGSTKFALLGLAESLYRELAPLGIRVTT 185 (250)
T ss_dssp CC----------------CCT-----------------------------THHHHHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred ccHHhcCC---------CCCC-----------------------------cchHHHHHHHHHHHHHHHHHhhhcCcEEEE
Confidence 99654321 1122 2399999999888876543 899999
Q ss_pred EecccccCC
Q psy11859 435 VRPSIVLPS 443 (851)
Q Consensus 435 vRp~~V~G~ 443 (851)
++||.|..+
T Consensus 186 v~PG~v~T~ 194 (250)
T 3nyw_A 186 LCPGWVNTD 194 (250)
T ss_dssp EEESSBCSH
T ss_pred EecCcccCc
Confidence 999998654
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-14 Score=154.22 Aligned_cols=180 Identities=17% Similarity=0.137 Sum_probs=130.5
Q ss_pred hhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCC------CHHHHHHHHhcChhhHHHhhhCcccCC
Q psy11859 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGL------TPKARLAEFSKLPVFERLRKECPAQLS 285 (851)
Q Consensus 212 i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~------~~~~rl~~~~~~~~f~~l~~~~~~~~~ 285 (851)
+..-++||+||||||+|.||+++++.|++.| .+|++++|..... ...+++.+.. +.+. ....
T Consensus 22 m~~~l~gk~~lVTGas~GIG~aia~~la~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~ 89 (299)
T 3t7c_A 22 MAGKVEGKVAFITGAARGQGRSHAITLAREG---ADIIAIDVCKQLDGVKLPMSTPDDLAETV-----RQVE----ALGR 89 (299)
T ss_dssp CCCTTTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEECCSCCTTCCSCCCCHHHHHHHH-----HHHH----HTTC
T ss_pred cccccCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEecccccccccccccCHHHHHHHH-----HHHH----hcCC
Confidence 3344789999999999999999999999998 7899998874311 1122332211 1111 1235
Q ss_pred CeEEEEcCCCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhc
Q psy11859 286 RLHIIEGDILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKM 350 (851)
Q Consensus 286 ~v~~v~gDi~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~ 350 (851)
++.++.+|++|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++...
T Consensus 90 ~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~ 163 (299)
T 3t7c_A 90 RIIASQVDVRDFD------AMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPH 163 (299)
T ss_dssp CEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7899999999886 6665554 79999999996532 2456788999999999999987643
Q ss_pred ----CCceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHH
Q psy11859 351 ----KKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY 426 (851)
Q Consensus 351 ----~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~ 426 (851)
++-.++|++||..+... .|. ...|+.||+..+.+.+.+
T Consensus 164 ~~~~~~~g~Iv~isS~~~~~~----------~~~----------------------------~~~Y~asKaa~~~l~~~l 205 (299)
T 3t7c_A 164 IMAGKRGGSIVFTSSIGGLRG----------AEN----------------------------IGNYIASKHGLHGLMRTM 205 (299)
T ss_dssp HHHTTSCEEEEEECCGGGTSC----------CTT----------------------------CHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcEEEEECChhhccC----------CCC----------------------------cchHHHHHHHHHHHHHHH
Confidence 23578999999655321 111 134999999999888765
Q ss_pred hC-----CCCEEEEecccccCCCCCC
Q psy11859 427 KT-----KLPVVIVRPSIVLPSFQEP 447 (851)
Q Consensus 427 ~~-----~l~~~ivRp~~V~G~~~~p 447 (851)
+. ++.+..|+||.|..+....
T Consensus 206 a~e~~~~gI~vn~v~PG~v~T~~~~~ 231 (299)
T 3t7c_A 206 ALELGPRNIRVNIVCPSSVATPMLLN 231 (299)
T ss_dssp HHHHGGGTEEEEEEEESCBSSTTTSS
T ss_pred HHHhcccCcEEEEEecCCccCccccc
Confidence 43 8999999999999886543
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=159.23 Aligned_cols=170 Identities=19% Similarity=0.205 Sum_probs=121.1
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHH-HHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKAR-LAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~r-l~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++|+||||||+|+||++++++|++.| .+|+++.|.......... +... .. ......++.++.+|++
T Consensus 1 ~~k~vlVTGas~GIG~ala~~L~~~G---~~v~~v~r~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~Dv~ 67 (327)
T 1jtv_A 1 ARTVVLITGCSSGIGLHLAVRLASDP---SQSFKVYATLRDLKTQGRLWEAA---------RA-LACPPGSLETLQLDVR 67 (327)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHHTCT---TCCEEEEEEESCGGGTHHHHHHH---------HH-TTCCTTSEEEEECCTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CceEEEEeecCcHHHHHHHHHHh---------hh-ccCCCCceEEEEecCC
Confidence 46899999999999999999999998 456666665433211111 1110 00 0011247899999999
Q ss_pred CCcCCCCHHHHHHHhcC-----ccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHH----hcCCceEEEEe
Q psy11859 296 QANLGIKDSDLLMLQEE-----VSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIAL----KMKKLVAFIHF 359 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~-----vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~fV~v 359 (851)
+++ ++..+++. +|+|||+||.... .+.++..+++|+.|+.++++++. +. +..++|++
T Consensus 68 d~~------~v~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~-~~g~IV~i 140 (327)
T 1jtv_A 68 DSK------SVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRR-GSGRVLVT 140 (327)
T ss_dssp CHH------HHHHHHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEE
T ss_pred CHH------HHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEE
Confidence 876 77777664 8999999996532 23567889999999999999873 23 36899999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..+... .|. ...|+.||+..|.+++.++. ++.+.+
T Consensus 141 sS~~~~~~----------~~~----------------------------~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~ 182 (327)
T 1jtv_A 141 GSVGGLMG----------LPF----------------------------NDVYCASKFALEGLCESLAVLLLPFGVHLSL 182 (327)
T ss_dssp EEGGGTSC----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred CCcccccC----------CCC----------------------------ChHHHHHHHHHHHHHHHHHHHhhhcCcEEEE
Confidence 99755321 111 13499999999998876643 899999
Q ss_pred EecccccCCC
Q psy11859 435 VRPSIVLPSF 444 (851)
Q Consensus 435 vRp~~V~G~~ 444 (851)
|+||.|..+.
T Consensus 183 v~PG~v~T~~ 192 (327)
T 1jtv_A 183 IECGPVHTAF 192 (327)
T ss_dssp EEECCBCC--
T ss_pred EEeCcccChH
Confidence 9999987653
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-14 Score=150.84 Aligned_cols=154 Identities=13% Similarity=0.082 Sum_probs=116.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
.++|+||||||+|+||++++++|++.| .+|++++|..... .-..+..|++
T Consensus 20 ~m~k~vlITGas~gIG~~la~~l~~~G---~~V~~~~r~~~~~---------------------------~~~~~~~d~~ 69 (251)
T 3orf_A 20 HMSKNILVLGGSGALGAEVVKFFKSKS---WNTISIDFRENPN---------------------------ADHSFTIKDS 69 (251)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCCTT---------------------------SSEEEECSCS
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCcccc---------------------------cccceEEEeC
Confidence 347899999999999999999999998 6899999986542 1135678888
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEe
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKMK-KLVAFIHF 359 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~~-~~~~fV~v 359 (851)
|++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++...- .-.++|++
T Consensus 70 d~~------~v~~~~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 143 (251)
T 3orf_A 70 GEE------EIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLT 143 (251)
T ss_dssp SHH------HHHHHHHHHHTTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEE
Confidence 875 5555543 57999999996421 24566789999999999999997642 12489999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-------CCCE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-------KLPV 432 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-------~l~~ 432 (851)
||..+... .|. ...|+.||+..|.+++.++. ++.+
T Consensus 144 sS~~~~~~----------~~~----------------------------~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v 185 (251)
T 3orf_A 144 GASAALNR----------TSG----------------------------MIAYGATKAATHHIIKDLASENGGLPAGSTS 185 (251)
T ss_dssp CCGGGGSC----------CTT----------------------------BHHHHHHHHHHHHHHHHHTSTTSSSCTTCEE
T ss_pred echhhccC----------CCC----------------------------CchhHHHHHHHHHHHHHHHHHhcccCCCcEE
Confidence 99765421 111 13499999999999987643 6889
Q ss_pred EEEecccccCC
Q psy11859 433 VIVRPSIVLPS 443 (851)
Q Consensus 433 ~ivRp~~V~G~ 443 (851)
.+++||.|.++
T Consensus 186 ~~v~PG~v~t~ 196 (251)
T 3orf_A 186 LGILPVTLDTP 196 (251)
T ss_dssp EEEEESCBCCH
T ss_pred EEEecCcCcCc
Confidence 99999999765
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-14 Score=152.66 Aligned_cols=168 Identities=20% Similarity=0.206 Sum_probs=119.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
.++|+||||||+|+||++++++|++.| .+|+++.+.... ..+.+.+ .+ .....++.++.+|++
T Consensus 25 ~~~k~~lVTGas~GIG~aia~~la~~G---~~Vv~~~~~~~~--~~~~~~~--------~~----~~~~~~~~~~~~Dl~ 87 (267)
T 3u5t_A 25 ETNKVAIVTGASRGIGAAIAARLASDG---FTVVINYAGKAA--AAEEVAG--------KI----EAAGGKALTAQADVS 87 (267)
T ss_dssp --CCEEEEESCSSHHHHHHHHHHHHHT---CEEEEEESSCSH--HHHHHHH--------HH----HHTTCCEEEEECCTT
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEcCCCHH--HHHHHHH--------HH----HhcCCeEEEEEcCCC
Confidence 468999999999999999999999998 677777554322 1122211 11 112347899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEee
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM-KKLVAFIHFS 360 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~vS 360 (851)
+++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... ..-.++|++|
T Consensus 88 ~~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 161 (267)
T 3u5t_A 88 DPA------AVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS 161 (267)
T ss_dssp CHH------HHHHHHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 886 6665554 79999999997543 2346778999999999999988753 2224899999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~iv 435 (851)
|..+... .|. ...|+.||+..+.+.+.++. ++.+..+
T Consensus 162 S~~~~~~----------~~~----------------------------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v 203 (267)
T 3u5t_A 162 TSQVGLL----------HPS----------------------------YGIYAAAKAGVEAMTHVLSKELRGRDITVNAV 203 (267)
T ss_dssp CTHHHHC----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEE
T ss_pred ChhhccC----------CCC----------------------------chHHHHHHHHHHHHHHHHHHHhhhhCCEEEEE
Confidence 9644221 111 13499999999999877643 8999999
Q ss_pred ecccccCCC
Q psy11859 436 RPSIVLPSF 444 (851)
Q Consensus 436 Rp~~V~G~~ 444 (851)
.||.|..+.
T Consensus 204 ~PG~v~T~~ 212 (267)
T 3u5t_A 204 APGPTATDL 212 (267)
T ss_dssp EECCBC---
T ss_pred EECCCcCcc
Confidence 999997764
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.4e-14 Score=152.45 Aligned_cols=176 Identities=16% Similarity=0.150 Sum_probs=128.6
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCC----------CHHHHHHHHhcChhhHHHhhhCcccC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGL----------TPKARLAEFSKLPVFERLRKECPAQL 284 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~----------~~~~rl~~~~~~~~f~~l~~~~~~~~ 284 (851)
-++||+||||||+|.||+++++.|++.| .+|++++|..... ...+++.++. +.+ ....
T Consensus 8 ~l~~k~~lVTGas~gIG~aia~~la~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~ 75 (286)
T 3uve_A 8 RVEGKVAFVTGAARGQGRSHAVRLAQEG---ADIIAVDICKPIRAGVVDTAIPASTPEDLAETA-----DLV----KGHN 75 (286)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHH-----HHH----HTTT
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCC---CeEEEEeccccccccccccccccCCHHHHHHHH-----HHH----hhcC
Confidence 4689999999999999999999999998 7899998874211 1123333221 111 1223
Q ss_pred CCeEEEEcCCCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHh
Q psy11859 285 SRLHIIEGDILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALK 349 (851)
Q Consensus 285 ~~v~~v~gDi~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~ 349 (851)
.++.++.+|++|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++..
T Consensus 76 ~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~ 149 (286)
T 3uve_A 76 RRIVTAEVDVRDYD------ALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVP 149 (286)
T ss_dssp CCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CceEEEEcCCCCHH------HHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 57999999999986 6665554 79999999997532 235678899999999999998864
Q ss_pred c----CCceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHH
Q psy11859 350 M----KKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDE 425 (851)
Q Consensus 350 ~----~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~ 425 (851)
. +.-.++|++||..+... .|. ...|+.||+..+.+.+.
T Consensus 150 ~~~~~~~~g~iv~isS~~~~~~----------~~~----------------------------~~~Y~asKaa~~~~~~~ 191 (286)
T 3uve_A 150 HMIAGGRGGSIILTSSVGGLKA----------YPH----------------------------TGHYVAAKHGVVGLMRA 191 (286)
T ss_dssp HHHHHTSCEEEEEECCGGGTSC----------CTT----------------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCcEEEEECchhhccC----------CCC----------------------------ccHHHHHHHHHHHHHHH
Confidence 3 12358999999655321 111 13499999999888876
Q ss_pred HhC-----CCCEEEEecccccCCCCC
Q psy11859 426 YKT-----KLPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 426 ~~~-----~l~~~ivRp~~V~G~~~~ 446 (851)
++. ++.+..|+||.|..+...
T Consensus 192 la~e~~~~gI~vn~v~PG~v~T~~~~ 217 (286)
T 3uve_A 192 FGVELGQHMIRVNSVHPTHVKTPMLH 217 (286)
T ss_dssp HHHHHGGGTEEEEEEEESSBSSTTTS
T ss_pred HHHHhcccCeEEEEEecCcccCCccc
Confidence 543 899999999999987654
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-14 Score=151.24 Aligned_cols=170 Identities=18% Similarity=0.208 Sum_probs=120.9
Q ss_pred hhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 213 ARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 213 ~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
+..++||+||||||+|+||++++++|++.| .+|++++|.... +.++ .+.+... ...++.++..
T Consensus 9 ~~~l~~k~vlITGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~------~~~~-----~~~~~~~---~~~~~~~~~~ 71 (247)
T 3i1j_A 9 PELLKGRVILVTGAARGIGAAAARAYAAHG---ASVVLLGRTEAS------LAEV-----SDQIKSA---GQPQPLIIAL 71 (247)
T ss_dssp TTTTTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCHHH------HHHH-----HHHHHHT---TSCCCEEEEC
T ss_pred CccCCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEecCHHH------HHHH-----HHHHHhc---CCCCceEEEe
Confidence 345789999999999999999999999998 689999987432 2111 1112111 1236677888
Q ss_pred CC--CCCcCCCCHHHHHHHhc-------CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHh---cCC
Q psy11859 293 DI--LQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALK---MKK 352 (851)
Q Consensus 293 Di--~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~---~~~ 352 (851)
|+ ++++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++.. ..+
T Consensus 72 d~d~~~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~ 145 (247)
T 3i1j_A 72 NLENATAQ------QYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSE 145 (247)
T ss_dssp CTTTCCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS
T ss_pred ccccCCHH------HHHHHHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC
Confidence 87 6554 5554443 79999999997532 245678899999999999999842 123
Q ss_pred ceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh-----
Q psy11859 353 LVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----- 427 (851)
Q Consensus 353 ~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----- 427 (851)
..++|++||..+... ..+. ..|+.||+..|.+++.++
T Consensus 146 ~~~iv~isS~~~~~~---------~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~ 187 (247)
T 3i1j_A 146 DASIAFTSSSVGRKG---------RANW-----------------------------GAYGVSKFATEGLMQTLADELEG 187 (247)
T ss_dssp SEEEEEECCGGGTSC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEcchhhcCC---------CCCc-----------------------------chhHHHHHHHHHHHHHHHHHhcC
Confidence 579999999654321 1111 349999999998887653
Q ss_pred -CCCCEEEEecccccCC
Q psy11859 428 -TKLPVVIVRPSIVLPS 443 (851)
Q Consensus 428 -~~l~~~ivRp~~V~G~ 443 (851)
.++.+..+.||.|-.+
T Consensus 188 ~~~i~v~~v~PG~v~t~ 204 (247)
T 3i1j_A 188 VTAVRANSINPGATRTG 204 (247)
T ss_dssp TSSEEEEEEECCCCSSH
T ss_pred CCCeEEEEEecCcccCc
Confidence 2688999999988654
|
| >2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-15 Score=131.13 Aligned_cols=82 Identities=28% Similarity=0.422 Sum_probs=78.6
Q ss_pred ceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHh
Q psy11859 691 IFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRH 770 (851)
Q Consensus 691 ~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H 770 (851)
||.|..|++.|.....|..|+++|.+++||+| +.|++.|.+...|..|++.|++++||.|. .|++.|.+...|.+|
T Consensus 1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H 76 (82)
T 2kmk_A 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPC--QYCGKRFHQKSDMKKHTFIHTGEKPHKCQ--VCGKAFSQSSNLITH 76 (82)
T ss_dssp CEECSSSCCEESSHHHHHHHHHHHHTCCCEEC--SSSCCEESSHHHHHHHHHHHHTCCCEECT--TTSCEESSHHHHHHH
T ss_pred CccCCCCcccccCchhHHHHHHHcCCCCCeeC--CcCChhhCCHHHHHHHHHHhcCCCCCcCC--CcchhhCChHHHHHH
Confidence 68999999999999999999999999999999 88999999999999999999999999998 899999999999999
Q ss_pred hhhcCC
Q psy11859 771 RRSHFG 776 (851)
Q Consensus 771 ~r~H~g 776 (851)
+++|+|
T Consensus 77 ~~~H~g 82 (82)
T 2kmk_A 77 SRKHTG 82 (82)
T ss_dssp HHHHC-
T ss_pred HHhhCC
Confidence 999986
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=150.70 Aligned_cols=160 Identities=14% Similarity=0.200 Sum_probs=117.4
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+||||||+|+||++++++|++.| .+|++++|... +++++. ++ ...++.++.+|+++++
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G---~~V~~~~r~~~------~~~~~~---------~~---~~~~~~~~~~D~~~~~ 60 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEG---KATYLTGRSES------KLSTVT---------NC---LSNNVGYRARDLASHQ 60 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTT---CCEEEEESCHH------HHHHHH---------HT---CSSCCCEEECCTTCHH
T ss_pred CEEEEecCCchHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHHH---------HH---HhhccCeEeecCCCHH
Confidence 579999999999999999999998 67899998642 222211 11 1347889999999886
Q ss_pred CCCCHHHHHHHhcCc----cEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhcC--CceEEEEeeeeeee
Q psy11859 299 LGIKDSDLLMLQEEV----SVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKMK--KLVAFIHFSTAFCH 365 (851)
Q Consensus 299 lgls~~~~~~~~~~v----d~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~--~~~~fV~vSTa~~~ 365 (851)
++..+++.+ |+|||+||.... .+.++..+++|+.|+.++++++...- +-.++|++||..+.
T Consensus 61 ------~v~~~~~~~~~~~d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~ 134 (230)
T 3guy_A 61 ------EVEQLFEQLDSIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQ 134 (230)
T ss_dssp ------HHHHHHHSCSSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGT
T ss_pred ------HHHHHHHHHhhcCCEEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccC
Confidence 777776654 899999996532 24567789999999999999887531 12289999996553
Q ss_pred CCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEecccc
Q psy11859 366 PDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVRPSIV 440 (851)
Q Consensus 366 ~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivRp~~V 440 (851)
.. ..+. ..|+.||+..+.+++.++. ++.+..++||.|
T Consensus 135 ~~---------~~~~-----------------------------~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v 176 (230)
T 3guy_A 135 QP---------KAQE-----------------------------STYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGM 176 (230)
T ss_dssp SC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC
T ss_pred CC---------CCCC-----------------------------chhHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcc
Confidence 21 1111 3499999999998876643 799999999988
Q ss_pred cCC
Q psy11859 441 LPS 443 (851)
Q Consensus 441 ~G~ 443 (851)
..+
T Consensus 177 ~t~ 179 (230)
T 3guy_A 177 ATE 179 (230)
T ss_dssp ---
T ss_pred cCh
Confidence 765
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-14 Score=150.56 Aligned_cols=169 Identities=17% Similarity=0.189 Sum_probs=121.9
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
..++||+||||||+|+||+++++.|++.| .+|++++|.... +.++ .+.+... ...++.++.+|
T Consensus 8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~------~~~~-----~~~~~~~---~~~~~~~~~~D 70 (252)
T 3f1l_A 8 DLLNDRIILVTGASDGIGREAAMTYARYG---ATVILLGRNEEK------LRQV-----ASHINEE---TGRQPQWFILD 70 (252)
T ss_dssp TTTTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHH------HHHH-----HHHHHHH---HSCCCEEEECC
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHH------HHHH-----HHHHHhh---cCCCceEEEEe
Confidence 45789999999999999999999999998 689999986422 2111 1111111 12367899999
Q ss_pred C--CCCcCCCCHHHHHHHhc-------CccEEEEccccCC----c----chhHHHHHHHHHHHHHHHHHHHHh---cCCc
Q psy11859 294 I--LQANLGIKDSDLLMLQE-------EVSVVFNGAASLK----L----EAELKENVAANTRGTQRLLDIALK---MKKL 353 (851)
Q Consensus 294 i--~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~----~----~~~~~~~~~~Nv~Gt~~ll~~a~~---~~~~ 353 (851)
+ ++++ ++..+++ ++|+|||+||... + .+.++..+++|+.|+.++++++.. ..+.
T Consensus 71 ~~~~~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~ 144 (252)
T 3f1l_A 71 LLTCTSE------NCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDA 144 (252)
T ss_dssp TTTCCHH------HHHHHHHHHHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSS
T ss_pred cccCCHH------HHHHHHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCC
Confidence 9 6654 5555443 7999999999742 1 235678899999999999999842 1235
Q ss_pred eEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----C
Q psy11859 354 VAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----K 429 (851)
Q Consensus 354 ~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----~ 429 (851)
.++|++||..+... ..+. ..|+.||+..+.+.+.++. .
T Consensus 145 g~iv~isS~~~~~~---------~~~~-----------------------------~~Y~asK~a~~~l~~~la~e~~~~ 186 (252)
T 3f1l_A 145 GSLVFTSSSVGRQG---------RANW-----------------------------GAYAASKFATEGMMQVLADEYQQR 186 (252)
T ss_dssp CEEEEECCGGGTSC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CEEEEECChhhccC---------CCCC-----------------------------chhHHHHHHHHHHHHHHHHHhcCC
Confidence 79999999654321 1111 3499999999998877654 5
Q ss_pred CCEEEEecccccCC
Q psy11859 430 LPVVIVRPSIVLPS 443 (851)
Q Consensus 430 l~~~ivRp~~V~G~ 443 (851)
+.+..+.||.|-.+
T Consensus 187 irvn~v~PG~v~t~ 200 (252)
T 3f1l_A 187 LRVNCINPGGTRTA 200 (252)
T ss_dssp CEEEEEECCSBSSH
T ss_pred cEEEEEecCcccCc
Confidence 88999999988754
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.4e-14 Score=151.59 Aligned_cols=171 Identities=12% Similarity=0.170 Sum_probs=123.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHH-HHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPK-ARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~-~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
+++|+||||||+|.||++++++|++.| .+|++++|........ +.+++. .+.+. ....++.++.+|+
T Consensus 7 l~~k~vlVTGas~GIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~Dv 74 (285)
T 3sc4_A 7 LRGKTMFISGGSRGIGLAIAKRVAADG---ANVALVAKSAEPHPKLPGTIYTA-----AKEIE----EAGGQALPIVGDI 74 (285)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHTTT---CEEEEEESCCSCCSSSCCCHHHH-----HHHHH----HHTSEEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECChhhhhhhhHHHHHH-----HHHHH----hcCCcEEEEECCC
Confidence 578999999999999999999999998 6899999986532110 011110 01111 1224789999999
Q ss_pred CCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEE
Q psy11859 295 LQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFI 357 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV 357 (851)
+|++ ++..+++ ++|++||+||.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 75 ~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv 148 (285)
T 3sc4_A 75 RDGD------AVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHIL 148 (285)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9986 6665554 79999999997643 2456778999999999999998654 1246899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+.... ..+ ...|+.||+..+.+.+.++. ++.+
T Consensus 149 ~isS~~~~~~~--------~~~-----------------------------~~~Y~asKaal~~~~~~la~e~~~~gI~v 191 (285)
T 3sc4_A 149 TLSPPIRLEPK--------WLR-----------------------------PTPYMMAKYGMTLCALGIAEELRDAGIAS 191 (285)
T ss_dssp ECCCCCCCSGG--------GSC-----------------------------SHHHHHHHHHHHHHHHHHHHHTGGGTCEE
T ss_pred EECChhhccCC--------CCC-----------------------------CchHHHHHHHHHHHHHHHHHHhcccCcEE
Confidence 99996543210 011 13499999999998876643 8999
Q ss_pred EEEeccccc
Q psy11859 433 VIVRPSIVL 441 (851)
Q Consensus 433 ~ivRp~~V~ 441 (851)
..+.||.+.
T Consensus 192 n~v~PG~~v 200 (285)
T 3sc4_A 192 NTLWPRTTV 200 (285)
T ss_dssp EEEECSSCB
T ss_pred EEEeCCCcc
Confidence 999998433
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-14 Score=153.82 Aligned_cols=169 Identities=14% Similarity=0.189 Sum_probs=119.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|.||++++++|++.| .+|+++.|..... +++.++. +.+. ....++.++.+|++
T Consensus 9 l~~k~vlVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~~---~~~~~~~-----~~~~----~~~~~~~~~~~Dv~ 73 (262)
T 3ksu_A 9 LKNKVIVIAGGIKNLGALTAKTFALES---VNLVLHYHQAKDS---DTANKLK-----DELE----DQGAKVALYQSDLS 73 (262)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHTTSS---CEEEEEESCGGGH---HHHHHHH-----HHHH----TTTCEEEEEECCCC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEecCccCH---HHHHHHH-----HHHH----hcCCcEEEEECCCC
Confidence 578999999999999999999999998 7888888865432 2222111 1111 12347899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEee
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM-KKLVAFIHFS 360 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~vS 360 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+-.++|++|
T Consensus 74 d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~is 147 (262)
T 3ksu_A 74 NEE------EVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIA 147 (262)
T ss_dssp SHH------HHHHHHHHHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 986 6666554 78999999996532 2456778999999999999999764 2246899999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~iv 435 (851)
|..+... ..+. ..|+.||+..+.+.+.++. ++.+..+
T Consensus 148 S~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v 189 (262)
T 3ksu_A 148 TSLLAAY---------TGFY-----------------------------STYAGNKAPVEHYTRAASKELMKQQISVNAI 189 (262)
T ss_dssp CCHHHHH---------HCCC-----------------------------CC-----CHHHHHHHHHHHHTTTTTCEEEEE
T ss_pred chhhccC---------CCCC-----------------------------chhHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 9644321 0111 3499999999998876643 8999999
Q ss_pred ecccccCC
Q psy11859 436 RPSIVLPS 443 (851)
Q Consensus 436 Rp~~V~G~ 443 (851)
.||.|..+
T Consensus 190 ~PG~v~T~ 197 (262)
T 3ksu_A 190 APGPMDTS 197 (262)
T ss_dssp EECCCCTH
T ss_pred eeCCCcCc
Confidence 99998754
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=155.26 Aligned_cols=169 Identities=18% Similarity=0.114 Sum_probs=119.0
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
.++||+||||||+|+||++++++|++.| .+|++++|.... +.++ .+.+... ....+.++.+|+
T Consensus 30 ~l~gk~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~------~~~~-----~~~~~~~---~~~~~~~~~~Dv 92 (281)
T 4dry_A 30 SGEGRIALVTGGGTGVGRGIAQALSAEG---YSVVITGRRPDV------LDAA-----AGEIGGR---TGNIVRAVVCDV 92 (281)
T ss_dssp ----CEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHH------HHHH-----HHHHHHH---HSSCEEEEECCT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHH------HHHH-----HHHHHhc---CCCeEEEEEcCC
Confidence 4689999999999999999999999998 789999986432 1111 1111111 112468999999
Q ss_pred CCCcCCCCHHHHHHHhc-------CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhcC-----Cce
Q psy11859 295 LQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKMK-----KLV 354 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~~-----~~~ 354 (851)
+|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++.+++...- .-.
T Consensus 93 ~d~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g 166 (281)
T 4dry_A 93 GDPD------QVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGG 166 (281)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCc
Confidence 9986 6655543 68999999997532 24567889999999999888876431 136
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~ 429 (851)
++|++||..+... ..+. ..|+.||+..+.+.+.++. +
T Consensus 167 ~IV~isS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~l~~~la~e~~~~g 208 (281)
T 4dry_A 167 RIINNGSISAQTP---------RPNS-----------------------------APYTATKHAITGLTKSTALDGRMHD 208 (281)
T ss_dssp EEEEECCGGGTCC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred EEEEECCHHhCCC---------CCCC-----------------------------hhHHHHHHHHHHHHHHHHHHhcccC
Confidence 8999999654321 1111 3499999999988876642 8
Q ss_pred CCEEEEecccccCCC
Q psy11859 430 LPVVIVRPSIVLPSF 444 (851)
Q Consensus 430 l~~~ivRp~~V~G~~ 444 (851)
+.+.+|+||.|..+.
T Consensus 209 I~vn~v~PG~v~T~~ 223 (281)
T 4dry_A 209 IACGQIDIGNAATDM 223 (281)
T ss_dssp EEEEEEEEECBCC--
T ss_pred eEEEEEEECcCcChh
Confidence 999999999987653
|
| >2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.54 E-value=4e-15 Score=127.44 Aligned_cols=82 Identities=30% Similarity=0.588 Sum_probs=75.6
Q ss_pred cccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCCCCccccccccCCc
Q psy11859 719 TFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLLAILNCPH 798 (851)
Q Consensus 719 ~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~Cgk~f~~~~~~~~H 798 (851)
||+| +.|++.|.....|..|++.|.+++||.|. .|++.|.+...|..|++.|++++||.|+.|++.|..
T Consensus 1 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~------- 69 (82)
T 2kmk_A 1 SFDC--KICGKSFKRSSTLSTHLLIHSDTRPYPCQ--YCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQ------- 69 (82)
T ss_dssp CEEC--SSSCCEESSHHHHHHHHHHHHTCCCEECS--SSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESS-------
T ss_pred CccC--CCCcccccCchhHHHHHHHcCCCCCeeCC--cCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCC-------
Confidence 6899 89999999999999999999999999998 899999999999999999999999999999997643
Q ss_pred ccccCcccccccccCCCCCCccChHHHHHHHHhhcC
Q psy11859 799 EAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVHER 834 (851)
Q Consensus 799 ~~~C~k~f~~~~~~~~~~~pf~Ck~~L~~H~r~Htg 834 (851)
+..|..|+++|+|
T Consensus 70 -----------------------~~~l~~H~~~H~g 82 (82)
T 2kmk_A 70 -----------------------SSNLITHSRKHTG 82 (82)
T ss_dssp -----------------------HHHHHHHHHHHC-
T ss_pred -----------------------hHHHHHHHHhhCC
Confidence 3589999999986
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.1e-14 Score=148.18 Aligned_cols=170 Identities=18% Similarity=0.212 Sum_probs=122.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|+++.+..... ..+...+ +. ....++.++.+|++
T Consensus 5 l~~k~vlITGas~gIG~~~a~~l~~~G---~~v~~~~~~~~~~-~~~~~~~---------~~----~~~~~~~~~~~D~~ 67 (255)
T 3icc_A 5 LKGKVALVTGASRGIGRAIAKRLANDG---ALVAIHYGNRKEE-AEETVYE---------IQ----SNGGSAFSIGANLE 67 (255)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCSHH-HHHHHHH---------HH----HTTCEEEEEECCTT
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC---CeEEEEeCCchHH-HHHHHHH---------HH----hcCCceEEEecCcC
Confidence 578999999999999999999999998 6777765443221 1111111 11 12347889999999
Q ss_pred CCcCCCCHHHHHHHhc-------------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc-CCce
Q psy11859 296 QANLGIKDSDLLMLQE-------------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM-KKLV 354 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~ 354 (851)
+.+ ++..+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... ..-.
T Consensus 68 ~~~------~~~~~~~~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~ 141 (255)
T 3icc_A 68 SLH------GVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNS 141 (255)
T ss_dssp SHH------HHHHHHHHHHHHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEE
T ss_pred CHH------HHHHHHHHHHHHhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCC
Confidence 876 5544432 29999999997532 1345678999999999999998754 1235
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~ 429 (851)
++|++||..+... .|. ...|+.||+..+.+++.++. +
T Consensus 142 ~iv~isS~~~~~~----------~~~----------------------------~~~Y~asKaa~~~~~~~la~e~~~~g 183 (255)
T 3icc_A 142 RIINISSAATRIS----------LPD----------------------------FIAYSMTKGAINTMTFTLAKQLGARG 183 (255)
T ss_dssp EEEEECCGGGTSC----------CTT----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred EEEEeCChhhccC----------CCC----------------------------cchhHHhHHHHHHHHHHHHHHHHhcC
Confidence 8999999654321 111 13499999999988876543 8
Q ss_pred CCEEEEecccccCCCCC
Q psy11859 430 LPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 430 l~~~ivRp~~V~G~~~~ 446 (851)
+.+.+++||.|..+...
T Consensus 184 i~v~~v~PG~v~t~~~~ 200 (255)
T 3icc_A 184 ITVNAILPGFVKTDMNA 200 (255)
T ss_dssp CEEEEEEECCBCCSSST
T ss_pred eEEEEEEEeeecccchh
Confidence 99999999999887543
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-14 Score=152.24 Aligned_cols=166 Identities=16% Similarity=0.130 Sum_probs=119.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||+++++.|++.| .+|++++|... ++.++ .+.+... ..++.++.+|++
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~------~~~~~-----~~~~~~~----~~~~~~~~~Dv~ 64 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAG---ATVYITGRHLD------TLRVV-----AQEAQSL----GGQCVPVVCDSS 64 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHHHH----SSEEEEEECCTT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH-----HHHHHHc----CCceEEEECCCC
Confidence 468999999999999999999999998 68999988632 22111 1112111 236889999999
Q ss_pred CCcCCCCHHHHHHHh--------cCccEEEEccc--cC--------Cc----chhHHHHHHHHHHHHHHHHHHHHhc---
Q psy11859 296 QANLGIKDSDLLMLQ--------EEVSVVFNGAA--SL--------KL----EAELKENVAANTRGTQRLLDIALKM--- 350 (851)
Q Consensus 296 ~~~lgls~~~~~~~~--------~~vd~ViH~AA--~~--------~~----~~~~~~~~~~Nv~Gt~~ll~~a~~~--- 350 (851)
|++ ++..++ .++|+|||+|+ .. .+ .+.++..+++|+.|+.++.+++...
T Consensus 65 ~~~------~v~~~~~~~~~~~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 138 (260)
T 2qq5_A 65 QES------EVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVP 138 (260)
T ss_dssp SHH------HHHHHHHHHHHHHTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGG
T ss_pred CHH------HHHHHHHHHHHhcCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhh
Confidence 876 444432 36799999994 21 11 2356788999999998887777531
Q ss_pred CCceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh---
Q psy11859 351 KKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK--- 427 (851)
Q Consensus 351 ~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~--- 427 (851)
.+..++|++||..+... .+. ..|+.||+..|.+.+.++
T Consensus 139 ~~~g~iv~isS~~~~~~----------~~~-----------------------------~~Y~asK~a~~~~~~~la~e~ 179 (260)
T 2qq5_A 139 AGQGLIVVISSPGSLQY----------MFN-----------------------------VPYGVGKAACDKLAADCAHEL 179 (260)
T ss_dssp GTCCEEEEECCGGGTSC----------CSS-----------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEcChhhcCC----------CCC-----------------------------CchHHHHHHHHHHHHHHHHHh
Confidence 13578999999754321 112 239999999999987664
Q ss_pred -C-CCCEEEEecccccCCC
Q psy11859 428 -T-KLPVVIVRPSIVLPSF 444 (851)
Q Consensus 428 -~-~l~~~ivRp~~V~G~~ 444 (851)
. ++++.+++||.|..+.
T Consensus 180 ~~~gi~v~~v~PG~v~T~~ 198 (260)
T 2qq5_A 180 RRHGVSCVSLWPGIVQTEL 198 (260)
T ss_dssp GGGTCEEEEEECCCSCTTT
T ss_pred ccCCeEEEEEecCccccHH
Confidence 2 8999999999997764
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-14 Score=153.92 Aligned_cols=164 Identities=14% Similarity=0.164 Sum_probs=120.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||++++++|++.| .+|++++|... +++++. ++ ...++.++.+|++
T Consensus 28 l~~k~vlVTGas~GIG~aia~~l~~~G---~~Vi~~~r~~~------~~~~~~---------~~---~~~~~~~~~~Dl~ 86 (281)
T 3ppi_A 28 FEGASAIVSGGAGGLGEATVRRLHADG---LGVVIADLAAE------KGKALA---------DE---LGNRAEFVSTNVT 86 (281)
T ss_dssp GTTEEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH---------HH---HCTTEEEEECCTT
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCChH------HHHHHH---------HH---hCCceEEEEcCCC
Confidence 689999999999999999999999998 68999988642 222111 11 1247899999999
Q ss_pred CCcCCCCHHHHHHHhc------CccEEEEccccCCc-------------chhHHHHHHHHHHHHHHHHHHHHhc------
Q psy11859 296 QANLGIKDSDLLMLQE------EVSVVFNGAASLKL-------------EAELKENVAANTRGTQRLLDIALKM------ 350 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~------~vd~ViH~AA~~~~-------------~~~~~~~~~~Nv~Gt~~ll~~a~~~------ 350 (851)
+++ ++..+++ ++|+|||+||-... .+.+...+++|+.|+.++++++...
T Consensus 87 ~~~------~v~~~~~~~~~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~ 160 (281)
T 3ppi_A 87 SED------SVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEP 160 (281)
T ss_dssp CHH------HHHHHHHHHTTSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCC
T ss_pred CHH------HHHHHHHHHHHhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc
Confidence 886 6665554 68999999553211 1246788999999999999988632
Q ss_pred ---CCceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh
Q psy11859 351 ---KKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK 427 (851)
Q Consensus 351 ---~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~ 427 (851)
++-.++|++||..+... ..+. ..|+.||+..+.+++.++
T Consensus 161 ~~~~~~g~iv~isS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~~~~~la 202 (281)
T 3ppi_A 161 RENGERGALVLTASIAGYEG---------QIGQ-----------------------------TAYAAAKAGVIGLTIAAA 202 (281)
T ss_dssp CTTSCCEEEEEECCGGGTSC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHH
T ss_pred cccCCCeEEEEEecccccCC---------CCCC-----------------------------cccHHHHHHHHHHHHHHH
Confidence 12458999999755421 1111 349999998887776553
Q ss_pred ----C-CCCEEEEecccccCCC
Q psy11859 428 ----T-KLPVVIVRPSIVLPSF 444 (851)
Q Consensus 428 ----~-~l~~~ivRp~~V~G~~ 444 (851)
. ++.+.+++||.|..+.
T Consensus 203 ~e~~~~gi~v~~v~PG~v~T~~ 224 (281)
T 3ppi_A 203 RDLSSAGIRVNTIAPGTMKTPI 224 (281)
T ss_dssp HHHGGGTEEEEEEEECSBCCHH
T ss_pred HHHhhcCeEEEEEecCcCCchh
Confidence 2 8999999999998653
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.1e-14 Score=146.06 Aligned_cols=149 Identities=13% Similarity=0.047 Sum_probs=115.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++.| .+|++++|... +|++
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~l~~~G---~~V~~~~r~~~-----------------------------------~D~~ 45 (223)
T 3uce_A 4 SDKTVYVVLGGTSGIGAELAKQLESEH---TIVHVASRQTG-----------------------------------LDIS 45 (223)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHCSTT---EEEEEESGGGT-----------------------------------CCTT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEecCCcc-----------------------------------cCCC
Confidence 468999999999999999999999998 78888887531 7888
Q ss_pred CCcCCCCHHHHHHHhc---CccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEeeeee
Q psy11859 296 QANLGIKDSDLLMLQE---EVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKMK-KLVAFIHFSTAF 363 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~---~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~~-~~~~fV~vSTa~ 363 (851)
|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++...- .-.++|++||..
T Consensus 46 ~~~------~v~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~ 119 (223)
T 3uce_A 46 DEK------SVYHYFETIGAFDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGML 119 (223)
T ss_dssp CHH------HHHHHHHHHCSEEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGG
T ss_pred CHH------HHHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchh
Confidence 876 6665554 79999999997521 24567889999999999999997642 123899999975
Q ss_pred eeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC---CCCEEEEecccc
Q psy11859 364 CHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT---KLPVVIVRPSIV 440 (851)
Q Consensus 364 ~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~---~l~~~ivRp~~V 440 (851)
+... ..+. ..|+.||+..|.+.+.++. .+.+..++||.|
T Consensus 120 ~~~~---------~~~~-----------------------------~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v 161 (223)
T 3uce_A 120 SRKV---------VANT-----------------------------YVKAAINAAIEATTKVLAKELAPIRVNAISPGLT 161 (223)
T ss_dssp GTSC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHTTSEEEEEEECSB
T ss_pred hccC---------CCCc-----------------------------hHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCC
Confidence 5331 1111 3499999999998877654 489999999999
Q ss_pred cCCCCC
Q psy11859 441 LPSFQE 446 (851)
Q Consensus 441 ~G~~~~ 446 (851)
..+...
T Consensus 162 ~t~~~~ 167 (223)
T 3uce_A 162 KTEAYK 167 (223)
T ss_dssp CSGGGT
T ss_pred cchhhh
Confidence 987543
|
| >2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-14 Score=129.34 Aligned_cols=73 Identities=53% Similarity=1.167 Sum_probs=40.1
Q ss_pred cccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCCCCcc
Q psy11859 717 VRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKS 789 (851)
Q Consensus 717 ~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~Cgk~f 789 (851)
.++|.|.++.|++.|.....|..|++.|+++++|.|....|++.|.+...|.+|+++|++++||.|+.|++.|
T Consensus 13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 85 (100)
T 2ebt_A 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSF 85 (100)
T ss_dssp CCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBC
T ss_pred CcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCcc
Confidence 3455553334555555555555555555555555553113555555555555555555555555555555543
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.1e-14 Score=149.08 Aligned_cols=167 Identities=23% Similarity=0.244 Sum_probs=104.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+||||||+|+||++++++|++ + ..|++++|... ++.++.+ ..++.++.+|++
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~-g---~~v~~~~r~~~------~~~~~~~--------------~~~~~~~~~D~~ 58 (245)
T 3e9n_A 3 LKKKIAVVTGATGGMGIEIVKDLSR-D---HIVYALGRNPE------HLAALAE--------------IEGVEPIESDIV 58 (245)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHTT-T---SEEEEEESCHH------HHHHHHT--------------STTEEEEECCHH
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHhC-C---CeEEEEeCCHH------HHHHHHh--------------hcCCcceecccc
Confidence 4689999999999999999999987 6 67889888532 2222111 236889999998
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhcC--CceEEEEeeeeeeeC
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKMK--KLVAFIHFSTAFCHP 366 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~~--~~~~fV~vSTa~~~~ 366 (851)
+...--...+...-..++|+|||+||..... +.+...+++|+.|+.++++++...- .-.++|++||..++.
T Consensus 59 ~~~~~~~~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~ 138 (245)
T 3e9n_A 59 KEVLEEGGVDKLKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAASGCVIYINSGAGNG 138 (245)
T ss_dssp HHHHTSSSCGGGTTCSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC------
T ss_pred hHHHHHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEcCccccc
Confidence 7631000001111123799999999976432 3456789999999998888875321 015899999976543
Q ss_pred CCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEeccccc
Q psy11859 367 DQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVRPSIVL 441 (851)
Q Consensus 367 ~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivRp~~V~ 441 (851)
.. .+. ..|+.||+..|.+++.++. ++.+.+++||.|.
T Consensus 139 ~~---------~~~-----------------------------~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~ 180 (245)
T 3e9n_A 139 PH---------PGN-----------------------------TIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTN 180 (245)
T ss_dssp -------------C-----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-
T ss_pred CC---------CCc-----------------------------hHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCcc
Confidence 21 111 3499999999998876643 8999999999998
Q ss_pred CCC
Q psy11859 442 PSF 444 (851)
Q Consensus 442 G~~ 444 (851)
++.
T Consensus 181 t~~ 183 (245)
T 3e9n_A 181 TPM 183 (245)
T ss_dssp ---
T ss_pred Cch
Confidence 864
|
| >2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-14 Score=127.62 Aligned_cols=86 Identities=23% Similarity=0.395 Sum_probs=52.0
Q ss_pred eccceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCC--CccccCccccCccccCch
Q psy11859 688 FFVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGE--RSFKCDWQDCKWQFSRSD 765 (851)
Q Consensus 688 ~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~ge--kp~~C~~~~C~k~F~~~~ 765 (851)
+.++|.|..|++.|.....|..|+++|++++||.| +.|++.|.+...|..|++.|+++ +||.|. .|++.|.+..
T Consensus 4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~--~C~~~f~~~~ 79 (95)
T 2yt9_A 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSC--PVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ--SCGKGFSRPD 79 (95)
T ss_dssp CCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEEC--SSSCCEESCHHHHHHHHHHHCCCCCSSBCCS--SSCCCBSSHH
T ss_pred CCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcC--CCCCCccCCHHHHHHHHHHhcCCCCCceECC--CccchhCCHH
Confidence 44556666666666666666666666666666666 55666666666666666666654 566665 5666666666
Q ss_pred hHHHhhh-hcCCC
Q psy11859 766 ELSRHRR-SHFGI 777 (851)
Q Consensus 766 ~L~~H~r-~H~ge 777 (851)
.|..|++ .|+++
T Consensus 80 ~L~~H~~~~H~~~ 92 (95)
T 2yt9_A 80 HLNGHIKQVHSGP 92 (95)
T ss_dssp HHHHHHHHTSCCC
T ss_pred HHHHHHHHhcCCC
Confidence 6666653 55543
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.4e-14 Score=151.26 Aligned_cols=164 Identities=19% Similarity=0.233 Sum_probs=120.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|+||++++++|++.| .+|++++|... ++.++ ..+ ...++.++.+|++
T Consensus 3 l~gk~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~------~~~~~---------~~~---~~~~~~~~~~Dv~ 61 (281)
T 3zv4_A 3 LTGEVALITGGASGLGRALVDRFVAEG---ARVAVLDKSAE------RLREL---------EVA---HGGNAVGVVGDVR 61 (281)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH---------HHH---TBTTEEEEECCTT
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCc---CEEEEEeCCHH------HHHHH---------HHH---cCCcEEEEEcCCC
Confidence 478999999999999999999999998 78999988632 22221 111 1247899999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCcc------------hhHHHHHHHHHHHHHHHHHHHHhcC--Cce
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKLE------------AELKENVAANTRGTQRLLDIALKMK--KLV 354 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~~------------~~~~~~~~~Nv~Gt~~ll~~a~~~~--~~~ 354 (851)
+++ ++..+++ ++|++||+||..... +.++..+++|+.|+.++++++...- +-.
T Consensus 62 ~~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g 135 (281)
T 3zv4_A 62 SLQ------DQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRG 135 (281)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 876 5555443 689999999975321 2366789999999999999986531 124
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----CC
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----KL 430 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----~l 430 (851)
++|++||..+.. +.|.. ..|+.||+..+.+.+.++. ++
T Consensus 136 ~iv~isS~~~~~----------~~~~~----------------------------~~Y~asKaa~~~l~~~la~e~~~~I 177 (281)
T 3zv4_A 136 SVVFTISNAGFY----------PNGGG----------------------------PLYTATKHAVVGLVRQMAFELAPHV 177 (281)
T ss_dssp EEEEECCGGGTS----------SSSSC----------------------------HHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred eEEEEecchhcc----------CCCCC----------------------------chhHHHHHHHHHHHHHHHHHhcCCC
Confidence 899999965432 11111 2499999999998877643 68
Q ss_pred CEEEEecccccCCC
Q psy11859 431 PVVIVRPSIVLPSF 444 (851)
Q Consensus 431 ~~~ivRp~~V~G~~ 444 (851)
.+..+.||.|..+.
T Consensus 178 rvn~v~PG~v~T~~ 191 (281)
T 3zv4_A 178 RVNGVAPGGMNTDL 191 (281)
T ss_dssp EEEEEEECSSCC--
T ss_pred EEEEEECCcCcCCc
Confidence 99999999998764
|
| >2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=9.7e-15 Score=128.99 Aligned_cols=82 Identities=34% Similarity=0.544 Sum_probs=75.7
Q ss_pred cCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCC--CCccCCCCCCcccc
Q psy11859 714 ENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI--KPYPCTLCVKKSLL 791 (851)
Q Consensus 714 h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~ge--kp~~C~~Cgk~f~~ 791 (851)
.+++++|+| +.|++.|.+...|..|+++|++++||.|. .|++.|.+...|.+|++.|+++ +||.|+.|++.|..
T Consensus 2 s~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~ 77 (95)
T 2yt9_A 2 SSGSSGVAC--EICGKIFRDVYHLNRHKLSHSGEKPYSCP--VCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSR 77 (95)
T ss_dssp CCCCSCEEC--SSSCCEESSSHHHHHHHHHSCSSCSEECS--SSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSS
T ss_pred CCCCCCeEC--CCCCCccCChHHHHHHHHhcCCCCCCcCC--CCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCC
Confidence 367899999 89999999999999999999999999998 8999999999999999999997 99999999999988
Q ss_pred ccccCCcc
Q psy11859 792 AILNCPHE 799 (851)
Q Consensus 792 ~~~~~~H~ 799 (851)
...+..|.
T Consensus 78 ~~~L~~H~ 85 (95)
T 2yt9_A 78 PDHLNGHI 85 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666554
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=152.27 Aligned_cols=175 Identities=17% Similarity=0.198 Sum_probs=125.2
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCH-HHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTP-KARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~-~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
-++||+||||||+|.||.+++++|++.| .+|++++|....... .+.+.+. .+.+ .....++.++.+|
T Consensus 42 ~l~gk~vlVTGas~GIG~aia~~La~~G---a~Vvl~~r~~~~~~~l~~~l~~~-----~~~~----~~~g~~~~~~~~D 109 (346)
T 3kvo_A 42 RLAGCTVFITGASRGIGKAIALKAAKDG---ANIVIAAKTAQPHPKLLGTIYTA-----AEEI----EAVGGKALPCIVD 109 (346)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTTT---CEEEEEESCCSCCSSSCCCHHHH-----HHHH----HHTTCEEEEEECC
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHHHCC---CEEEEEECChhhhhhhHHHHHHH-----HHHH----HhcCCeEEEEEcc
Confidence 3689999999999999999999999998 789999998654211 0001000 0111 1123478899999
Q ss_pred CCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEE
Q psy11859 294 ILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAF 356 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~f 356 (851)
++|++ ++..+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++
T Consensus 110 v~d~~------~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~I 183 (346)
T 3kvo_A 110 VRDEQ------QISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHI 183 (346)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEE
Confidence 99886 6666554 79999999997542 2456788999999999999998542 235799
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----CCCE
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----KLPV 432 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----~l~~ 432 (851)
|++||..+.... +..+. ..|+.||+..+.+++.++. ++.+
T Consensus 184 V~iSS~~~~~~~-------~~~~~-----------------------------~~Y~aSKaal~~l~~~la~e~~~gIrv 227 (346)
T 3kvo_A 184 LNISPPLNLNPV-------WFKQH-----------------------------CAYTIAKYGMSMYVLGMAEEFKGEIAV 227 (346)
T ss_dssp EEECCCCCCCGG-------GTSSS-----------------------------HHHHHHHHHHHHHHHHHHHHTTTTCEE
T ss_pred EEECCHHHcCCC-------CCCCc-----------------------------hHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 999996543210 00111 3499999999988876643 7899
Q ss_pred EEEecccccCC
Q psy11859 433 VIVRPSIVLPS 443 (851)
Q Consensus 433 ~ivRp~~V~G~ 443 (851)
..|.|+.++.+
T Consensus 228 n~v~PG~~i~T 238 (346)
T 3kvo_A 228 NALWPKTAIHT 238 (346)
T ss_dssp EEEECSBCBCC
T ss_pred EEEeCCCcccc
Confidence 99999964443
|
| >2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=8.6e-15 Score=124.65 Aligned_cols=74 Identities=23% Similarity=0.539 Sum_probs=67.8
Q ss_pred cCCcccccccCCccCccccChhhHHHHHh-hhcCCCccccCccc--cCccccCchhHHHhhhhcCCCCCccCCCCCCcc
Q psy11859 714 ENLVRTFQCTYPECLKFYAKMSHLKAHLR-RHSGERSFKCDWQD--CKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKS 789 (851)
Q Consensus 714 h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~-~H~gekp~~C~~~~--C~k~F~~~~~L~~H~r~H~gekp~~C~~Cgk~f 789 (851)
.+++++|.|.++.|++.|.+...|..|++ .|++++||.|. . |++.|.+...|.+|+++|++++||.|+.||+.|
T Consensus 2 s~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~--~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F 78 (79)
T 2dlk_A 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCP--EPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78 (79)
T ss_dssp CSCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECS--CTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred CCCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECC--CCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCC
Confidence 36788999977779999999999999999 79999999997 6 999999999999999999999999999999987
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-14 Score=151.84 Aligned_cols=216 Identities=13% Similarity=0.071 Sum_probs=143.1
Q ss_pred cCCCEEEEecCc--cHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 216 YAGRSVLVTGGT--GFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 216 ~~~k~VlVTGat--GFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
++||+||||||+ |+||.+++++|++.| .+|+++.|..... ..+.++++ .+. ...++.++.+|
T Consensus 18 l~~k~vlITGas~~~giG~~~a~~l~~~G---~~v~~~~~~~~~~-~~~~~~~l---------~~~---~~~~~~~~~~D 81 (267)
T 3gdg_A 18 LKGKVVVVTGASGPKGMGIEAARGCAEMG---AAVAITYASRAQG-AEENVKEL---------EKT---YGIKAKAYKCQ 81 (267)
T ss_dssp CTTCEEEETTCCSSSSHHHHHHHHHHHTS---CEEEECBSSSSSH-HHHHHHHH---------HHH---HCCCEECCBCC
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCC---CeEEEEeCCcchh-HHHHHHHH---------HHh---cCCceeEEecC
Confidence 689999999999 999999999999998 7888888876441 12222221 111 12478999999
Q ss_pred CCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHH----hcCCceE
Q psy11859 294 ILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIAL----KMKKLVA 355 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~ 355 (851)
+++++ ++..+++ ++|+|||+||.... .+.+...+++|+.|+.++++++. +.+ ..+
T Consensus 82 l~~~~------~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~ 154 (267)
T 3gdg_A 82 VDSYE------SCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERG-TGS 154 (267)
T ss_dssp TTCHH------HHHHHHHHHHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcC-Cce
Confidence 99886 6555543 67999999997543 24567889999999999999883 332 468
Q ss_pred EEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----CCC
Q psy11859 356 FIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----KLP 431 (851)
Q Consensus 356 fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----~l~ 431 (851)
+|++||..+.... ++.+. ..|+.||+..+.+++.++. .+.
T Consensus 155 iv~isS~~~~~~~-------~~~~~-----------------------------~~Y~~sK~a~~~~~~~la~e~~~~i~ 198 (267)
T 3gdg_A 155 LVITASMSGHIAN-------FPQEQ-----------------------------TSYNVAKAGCIHMARSLANEWRDFAR 198 (267)
T ss_dssp EEEECCGGGTSCC-------SSSCC-----------------------------HHHHHHHHHHHHHHHHHHHHTTTTCE
T ss_pred EEEEccccccccC-------CCCCC-----------------------------CcchHHHHHHHHHHHHHHHHhccCcE
Confidence 9999996543211 01112 3499999999999887654 478
Q ss_pred EEEEecccccCCCCCCchh-HhhhhcCCce-EEEEcccCceeEEEeec--C--CCCccEEEEeCC
Q psy11859 432 VVIVRPSIVLPSFQEPVPG-WVDSLNGPVG-VLVASGKGVVRSMILND--L--STETQVFNISSN 490 (851)
Q Consensus 432 ~~ivRp~~V~G~~~~p~p~-~i~~~~~~~~-~~~~~g~~v~~~~~~~~--~--~~~~~iyni~~~ 490 (851)
+..+.||.|-.+.....+. +...+....+ --.+...++++++.... . ...|+++++++|
T Consensus 199 v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~r~~~~~dva~~~~~l~s~~~~~itG~~i~vdgG 263 (267)
T 3gdg_A 199 VNSISPGYIDTGLSDFVPKETQQLWHSMIPMGRDGLAKELKGAYVYFASDASTYTTGADLLIDGG 263 (267)
T ss_dssp EEEEEECCEECSCGGGSCHHHHHHHHTTSTTSSCEETHHHHHHHHHHHSTTCTTCCSCEEEESTT
T ss_pred EEEEECCccccchhhhCCHHHHHHHHhcCCCCCCcCHHHHHhHhheeecCccccccCCEEEECCc
Confidence 9999999997765433222 2222211111 01122345554433221 1 235788888877
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=7.9e-14 Score=148.25 Aligned_cols=163 Identities=10% Similarity=0.096 Sum_probs=120.6
Q ss_pred cCCCEEEEecC--ccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 216 YAGRSVLVTGG--TGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 216 ~~~k~VlVTGa--tGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
+++|+|||||| +|+||+++++.|++.| .+|++++|.... .+++ +.++. ..++.++.+|
T Consensus 5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G---~~V~~~~r~~~~-----~~~~---------~~~~~---~~~~~~~~~D 64 (269)
T 2h7i_A 5 LDGKRILVSGIITDSSIAFHIARVAQEQG---AQLVLTGFDRLR-----LIQR---------ITDRL---PAKAPLLELD 64 (269)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTT---CEEEEEECSCHH-----HHHH---------HHTTS---SSCCCEEECC
T ss_pred cCCCEEEEECCCCCCchHHHHHHHHHHCC---CEEEEEecChHH-----HHHH---------HHHhc---CCCceEEEcc
Confidence 57899999999 9999999999999998 689999886421 1111 11111 2367889999
Q ss_pred CCCCcCCCCHHHHHHHhc----------CccEEEEccccCC--------c----chhHHHHHHHHHHHHHHHHHHHHhcC
Q psy11859 294 ILQANLGIKDSDLLMLQE----------EVSVVFNGAASLK--------L----EAELKENVAANTRGTQRLLDIALKMK 351 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~----------~vd~ViH~AA~~~--------~----~~~~~~~~~~Nv~Gt~~ll~~a~~~~ 351 (851)
+++++ ++..+++ ++|+|||+||... + .+.++..+++|+.|+.++++++...-
T Consensus 65 v~~~~------~v~~~~~~~~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~ 138 (269)
T 2h7i_A 65 VQNEE------HLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIM 138 (269)
T ss_dssp TTCHH------HHHHHHHHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred CCCHH------HHHHHHHHHHHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99886 6665554 7999999999754 1 23566789999999999999997531
Q ss_pred -CceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh---
Q psy11859 352 -KLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK--- 427 (851)
Q Consensus 352 -~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~--- 427 (851)
.-.++|++||....+ .|. ...|+.||+..+.+.+.++
T Consensus 139 ~~~g~iv~iss~~~~~-----------~~~----------------------------~~~Y~asKaa~~~l~~~la~e~ 179 (269)
T 2h7i_A 139 NPGGSIVGMDFDPSRA-----------MPA----------------------------YNWMTVAKSALESVNRFVAREA 179 (269)
T ss_dssp EEEEEEEEEECCCSSC-----------CTT----------------------------THHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEcCccccc-----------cCc----------------------------hHHHHHHHHHHHHHHHHHHHHh
Confidence 125899999854321 111 1349999999998887653
Q ss_pred -C-CCCEEEEecccccCC
Q psy11859 428 -T-KLPVVIVRPSIVLPS 443 (851)
Q Consensus 428 -~-~l~~~ivRp~~V~G~ 443 (851)
. ++.+.+++||.|-.+
T Consensus 180 ~~~gi~vn~v~PG~v~T~ 197 (269)
T 2h7i_A 180 GKYGVRSNLVAAGPIRTL 197 (269)
T ss_dssp HTTTCEEEEEEECCCCCH
T ss_pred cccCcEEEEEecCcccch
Confidence 2 899999999998654
|
| >2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-14 Score=126.33 Aligned_cols=85 Identities=27% Similarity=0.455 Sum_probs=79.5
Q ss_pred ccceeecC--CccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchh
Q psy11859 689 FVIFTQIL--PAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDE 766 (851)
Q Consensus 689 ~~~~~c~~--c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~ 766 (851)
..+|.|.. |++.|.....|..|+++|++++||.|.++.|++.|.+...|..|+++|++++||.|+ .|++.|.+...
T Consensus 3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~ 80 (89)
T 2wbs_A 3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ--KCDRAFSRSDH 80 (89)
T ss_dssp CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECS--SSSCEESSHHH
T ss_pred CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCC--CCCcccCCHHH
Confidence 46799999 999999999999999999999999994447999999999999999999999999998 89999999999
Q ss_pred HHHhhhhcC
Q psy11859 767 LSRHRRSHF 775 (851)
Q Consensus 767 L~~H~r~H~ 775 (851)
|..|+++|.
T Consensus 81 l~~H~~~H~ 89 (89)
T 2wbs_A 81 LALHMKRHF 89 (89)
T ss_dssp HHHHGGGGC
T ss_pred HHHHHHhhC
Confidence 999999884
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=146.54 Aligned_cols=173 Identities=13% Similarity=0.141 Sum_probs=122.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCH-HHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTP-KARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~-~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
++||+||||||+|.||++++++|++.| .+|++++|....... .+.+.+. .+.+. ....++.++.+|+
T Consensus 4 l~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~Dv 71 (274)
T 3e03_A 4 LSGKTLFITGASRGIGLAIALRAARDG---ANVAIAAKSAVANPKLPGTIHSA-----AAAVN----AAGGQGLALKCDI 71 (274)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCCSCCTTSCCCHHHH-----HHHHH----HHTSEEEEEECCT
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCC---CEEEEEeccchhhhhhHHHHHHH-----HHHHH----hcCCeEEEEeCCC
Confidence 478999999999999999999999998 689999998654211 0011110 00111 1234788999999
Q ss_pred CCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEE
Q psy11859 295 LQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFI 357 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV 357 (851)
+|++ ++..+++ ++|++||+||.... .+.++..+++|+.|+.++.+++... .+-.++|
T Consensus 72 ~~~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv 145 (274)
T 3e03_A 72 REED------QVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHIL 145 (274)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEE
Confidence 9886 6655543 78999999997532 2456788999999999999998642 2346899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+..... ... ...|+.||+..+.+.+.++. ++.+
T Consensus 146 ~isS~~~~~~~~----------~~~--------------------------~~~Y~asKaal~~l~~~la~e~~~~gI~v 189 (274)
T 3e03_A 146 TLAPPPSLNPAW----------WGA--------------------------HTGYTLAKMGMSLVTLGLAAEFGPQGVAI 189 (274)
T ss_dssp ECCCCCCCCHHH----------HHH--------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEE
T ss_pred EECChHhcCCCC----------CCC--------------------------CchHHHHHHHHHHHHHHHHHHhhhcCEEE
Confidence 999964432100 000 13499999999988876543 8999
Q ss_pred EEEecccccC
Q psy11859 433 VIVRPSIVLP 442 (851)
Q Consensus 433 ~ivRp~~V~G 442 (851)
..+.||.+..
T Consensus 190 n~v~PG~~v~ 199 (274)
T 3e03_A 190 NALWPRTVIA 199 (274)
T ss_dssp EEEECSBCBC
T ss_pred EEEECCcccc
Confidence 9999995443
|
| >4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.9e-15 Score=117.31 Aligned_cols=58 Identities=34% Similarity=0.540 Sum_probs=49.6
Q ss_pred cccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCC
Q psy11859 717 VRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778 (851)
Q Consensus 717 ~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gek 778 (851)
||||+| ++||++|.+.++|..|+++|+|++||.|. .||++|.+.+.|.+|+++|+|++
T Consensus 2 EKpy~C--~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~--~C~k~F~~~~~L~~H~~~Htgep 59 (60)
T 4gzn_C 2 ERPFFC--NFCGKTYRDASGLSRHRRAHLGYRPRSCP--ECGKCFRDQSEVNRHLKVHQNKP 59 (60)
T ss_dssp CCCEEC--TTTCCEESSHHHHHHHHHHHHTCCCEECT--TTCCEESSHHHHHHHGGGGSCC-
T ss_pred CCCccC--CCCCCEeCCHHHHHHHHHHhCCCcCeECC--CCCCCcCCHHHHHHHhCccCCCC
Confidence 688888 78888888888888888888888888887 88888888888888888888874
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=7.7e-14 Score=147.40 Aligned_cols=167 Identities=18% Similarity=0.172 Sum_probs=119.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHH---hCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLR---SCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~---~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
+++|+||||||+|+||++++++|++ .| .+|++++|... ++.++ .+.+....+ ..++.++.+
T Consensus 4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G---~~V~~~~r~~~------~~~~~-----~~~l~~~~~--~~~~~~~~~ 67 (259)
T 1oaa_A 4 LGCAVCVLTGASRGFGRALAPQLARLLSPG---SVMLVSARSES------MLRQL-----KEELGAQQP--DLKVVLAAA 67 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTT---CEEEEEESCHH------HHHHH-----HHHHHHHCT--TSEEEEEEC
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHhhcCC---CeEEEEeCCHH------HHHHH-----HHHHHhhCC--CCeEEEEec
Confidence 5689999999999999999999998 77 68999998642 22211 112222111 236889999
Q ss_pred CCCCCcCCCCHHHHHHHh----c-----Ccc--EEEEccccCC-----c-----chhHHHHHHHHHHHHHHHHHHHHhcC
Q psy11859 293 DILQANLGIKDSDLLMLQ----E-----EVS--VVFNGAASLK-----L-----EAELKENVAANTRGTQRLLDIALKMK 351 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~----~-----~vd--~ViH~AA~~~-----~-----~~~~~~~~~~Nv~Gt~~ll~~a~~~~ 351 (851)
|+++++ ++..++ + ++| +|||+||... + .+.++..+++|+.|+.++++++...-
T Consensus 68 Dv~~~~------~v~~~~~~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~ 141 (259)
T 1oaa_A 68 DLGTEA------GVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAF 141 (259)
T ss_dssp CTTSHH------HHHHHHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTS
T ss_pred CCCCHH------HHHHHHHHHHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999876 555443 2 467 9999999742 1 24567889999999999999997531
Q ss_pred -----CceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHH
Q psy11859 352 -----KLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY 426 (851)
Q Consensus 352 -----~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~ 426 (851)
+..++|++||..++.. ..+. ..|+.||+..|.+.+.+
T Consensus 142 ~~~~~~~g~iv~isS~~~~~~---------~~~~-----------------------------~~Y~asKaa~~~~~~~l 183 (259)
T 1oaa_A 142 QDSPGLSKTVVNISSLCALQP---------YKGW-----------------------------GLYCAGKAARDMLYQVL 183 (259)
T ss_dssp CCCTTCEEEEEEECCGGGTSC---------CTTC-----------------------------HHHHHHHHHHHHHHHHH
T ss_pred hhccCCCceEEEEcCchhcCC---------CCCc-----------------------------cHHHHHHHHHHHHHHHH
Confidence 2357999999755321 1111 34999999999998877
Q ss_pred hC---CCCEEEEecccccC
Q psy11859 427 KT---KLPVVIVRPSIVLP 442 (851)
Q Consensus 427 ~~---~l~~~ivRp~~V~G 442 (851)
+. ++.+..+.||.|-.
T Consensus 184 a~e~~~i~vn~v~PG~v~T 202 (259)
T 1oaa_A 184 AAEEPSVRVLSYAPGPLDN 202 (259)
T ss_dssp HHHCTTEEEEEEECCSBSS
T ss_pred HhhCCCceEEEecCCCcCc
Confidence 54 57788889987754
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=148.00 Aligned_cols=174 Identities=17% Similarity=0.104 Sum_probs=121.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEe-cCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILC-RAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~-R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
+++|+||||||+|.||+++++.|++.| .+|++++ |... ++.++ .+.+... ...++.++.+|+
T Consensus 7 l~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~~r~~~------~~~~~-----~~~l~~~---~~~~~~~~~~Dl 69 (291)
T 1e7w_A 7 PTVPVALVTGAAKRLGRSIAEGLHAEG---YAVCLHYHRSAA------EANAL-----SATLNAR---RPNSAITVQADL 69 (291)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHH------HHHHH-----HHHHHHH---STTCEEEEECCC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CeEEEEcCCCHH------HHHHH-----HHHHhhh---cCCeeEEEEeec
Confidence 578999999999999999999999998 6889988 7532 22111 1112111 124789999999
Q ss_pred CCCcC-----------CCCHHHHHHHh-------cCccEEEEccccCCc---------------------chhHHHHHHH
Q psy11859 295 LQANL-----------GIKDSDLLMLQ-------EEVSVVFNGAASLKL---------------------EAELKENVAA 335 (851)
Q Consensus 295 ~~~~l-----------gls~~~~~~~~-------~~vd~ViH~AA~~~~---------------------~~~~~~~~~~ 335 (851)
++++- +-+.+++..++ .++|+|||+||.... .+.+...+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (291)
T 1e7w_A 70 SNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGS 149 (291)
T ss_dssp SSSCBCCCC----CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHH
T ss_pred CCcccccccccccccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHH
Confidence 98750 00000333333 379999999996532 3345678999
Q ss_pred HHHHHHHHHHHHHhc---CC------ceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccC
Q psy11859 336 NTRGTQRLLDIALKM---KK------LVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILG 406 (851)
Q Consensus 336 Nv~Gt~~ll~~a~~~---~~------~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (851)
|+.|+.++++++... .+ ..++|++||..++.. .|.
T Consensus 150 N~~g~~~l~~~~~~~m~~~~~~~~~~~g~Iv~isS~~~~~~----------~~~-------------------------- 193 (291)
T 1e7w_A 150 NAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQP----------LLG-------------------------- 193 (291)
T ss_dssp HTHHHHHHHHHHHHHHHTSCGGGSCSCEEEEEECCTTTTSC----------CTT--------------------------
T ss_pred HhHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEechhhcCC----------CCC--------------------------
Confidence 999999999988642 12 478999999654321 111
Q ss_pred CCCchhhHHHHHHHHHHHHHhC-----CCCEEEEecccccCCC
Q psy11859 407 PHPNSYTFTKRLTETLVDEYKT-----KLPVVIVRPSIVLPSF 444 (851)
Q Consensus 407 ~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivRp~~V~G~~ 444 (851)
...|+.||+..+.+.+.++. ++.+..|+||.|..+.
T Consensus 194 --~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~ 234 (291)
T 1e7w_A 194 --YTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD 234 (291)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGG
T ss_pred --CchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCccCCc
Confidence 13499999999988876543 8999999999987664
|
| >2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-14 Score=128.96 Aligned_cols=87 Identities=25% Similarity=0.389 Sum_probs=81.4
Q ss_pred eccceeecC--CccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCch
Q psy11859 688 FFVIFTQIL--PAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSD 765 (851)
Q Consensus 688 ~~~~~~c~~--c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~ 765 (851)
..++|.|.. |++.|.....|..|+++|.++++|.|.++.|++.|.+...|..|+++|++++||.|. .|++.|.+..
T Consensus 12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~ 89 (100)
T 2ebt_A 12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCG--VCNRSFSRSD 89 (100)
T ss_dssp SCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCS--SSCCBCSSHH
T ss_pred cCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECC--CCcCccCCHH
Confidence 356789997 999999999999999999999999995447999999999999999999999999998 8999999999
Q ss_pred hHHHhhhhcCC
Q psy11859 766 ELSRHRRSHFG 776 (851)
Q Consensus 766 ~L~~H~r~H~g 776 (851)
.|..|+++|++
T Consensus 90 ~l~~H~~~H~~ 100 (100)
T 2ebt_A 90 HLALHMKRHQN 100 (100)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhCC
Confidence 99999999975
|
| >2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-14 Score=132.47 Aligned_cols=87 Identities=20% Similarity=0.274 Sum_probs=77.4
Q ss_pred eeeeccceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCc
Q psy11859 685 WHYFFVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRS 764 (851)
Q Consensus 685 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~ 764 (851)
.|++.++|.| .|++.|.....|..|++.|.+++||.| +.|++.|.+...|..|+++|+++++|.|. .|++.|.+.
T Consensus 4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~ 78 (110)
T 2csh_A 4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGC--GVCGKKFKMKHHLVGHMKIHTGIKPYECN--ICAKRFMWR 78 (110)
T ss_dssp CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEEC--TTTSCEESSSHHHHHHHTTTCCCCCEECS--SSCCEESCH
T ss_pred CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccC--CCCCcccCCHHHHHHHHHHcCCCCCeeCC--CCcchhcCH
Confidence 4778888999 899999999999999999999999999 78999999999999999999999999997 899999999
Q ss_pred hhHHHhhhhcCC
Q psy11859 765 DELSRHRRSHFG 776 (851)
Q Consensus 765 ~~L~~H~r~H~g 776 (851)
..|.+|++.|+.
T Consensus 79 ~~l~~H~~~~~~ 90 (110)
T 2csh_A 79 DSFHRHVTSCTK 90 (110)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHccc
Confidence 999999988764
|
| >2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.7e-14 Score=129.01 Aligned_cols=75 Identities=29% Similarity=0.629 Sum_probs=70.8
Q ss_pred cccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCCCCcccc
Q psy11859 712 TFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLL 791 (851)
Q Consensus 712 ~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~Cgk~f~~ 791 (851)
..|++++||.| .|++.|.+...|..|++.|.+++||.|. .|++.|.+...|.+|+++|++++||.|+.|++.|..
T Consensus 3 ~~h~~~k~~~C---~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 77 (110)
T 2csh_A 3 SGSSGDKLYPC---QCGKSFTHKSQRDRHMSMHLGLRPYGCG--VCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMW 77 (110)
T ss_dssp CCCCCCCCEEC---TTSCEESSHHHHHHHHHHHSCCCSEECT--TTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESC
T ss_pred CCCCCCCCEec---cCCCccCCHHHHHHHHHHcCCCcCccCC--CCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcC
Confidence 47899999999 3999999999999999999999999998 899999999999999999999999999999997654
|
| >2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3e-14 Score=124.07 Aligned_cols=75 Identities=49% Similarity=1.040 Sum_probs=67.1
Q ss_pred cccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCCCCcccc
Q psy11859 717 VRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLL 791 (851)
Q Consensus 717 ~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~Cgk~f~~ 791 (851)
.++|.|.++.|++.|.....|..|++.|++++||.|+...|++.|.+...|.+|++.|++++||.|+.|++.|..
T Consensus 3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 77 (89)
T 2wbs_A 3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSR 77 (89)
T ss_dssp CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESS
T ss_pred CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCC
Confidence 578999544599999999999999999999999999522599999999999999999999999999999997644
|
| >4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-14 Score=116.92 Aligned_cols=58 Identities=22% Similarity=0.209 Sum_probs=55.7
Q ss_pred ccceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCC
Q psy11859 689 FVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGER 748 (851)
Q Consensus 689 ~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gek 748 (851)
++||.|+.|+++|.....|..|+++|++++||+| ++||++|.+.++|..|+++|+|++
T Consensus 2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C--~~C~k~F~~~~~L~~H~~~Htgep 59 (60)
T 4gzn_C 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSC--PECGKCFRDQSEVNRHLKVHQNKP 59 (60)
T ss_dssp CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEEC--TTTCCEESSHHHHHHHGGGGSCC-
T ss_pred CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeEC--CCCCCCcCCHHHHHHHhCccCCCC
Confidence 6899999999999999999999999999999999 899999999999999999999975
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=143.02 Aligned_cols=163 Identities=14% Similarity=0.106 Sum_probs=111.4
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+||||||+|+||+++++.|++.| .+|++++|..... +.+.+ +... ..++..+ |..+..
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~---~~~~~---------l~~~----~~~~~~~--d~~~v~ 60 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAG---HTVACHDESFKQK---DELEA---------FAET----YPQLKPM--SEQEPA 60 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTT---CEEEECCGGGGSH---HHHHH---------HHHH----CTTSEEC--CCCSHH
T ss_pred eEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHH---HHHHH---------HHhc----CCcEEEE--CHHHHH
Confidence 689999999999999999999998 7899998875431 11111 1111 1133333 333211
Q ss_pred CCCCHHHHHHH---hcCccEEEEccccC-Cc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEeeeeee
Q psy11859 299 LGIKDSDLLML---QEEVSVVFNGAASL-KL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHFSTAFC 364 (851)
Q Consensus 299 lgls~~~~~~~---~~~vd~ViH~AA~~-~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~vSTa~~ 364 (851)
.-+..+ ..++|+|||+||.. .. .+.++..+++|+.|+.++++++... .+..++|++||..+
T Consensus 61 -----~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~ 135 (254)
T 1zmt_A 61 -----ELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATP 135 (254)
T ss_dssp -----HHHHHHHHHHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTT
T ss_pred -----HHHHHHHHHhCCCCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCccc
Confidence 111112 23799999999976 21 2356788999999999999988531 12569999999654
Q ss_pred eCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEeccc
Q psy11859 365 HPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVRPSI 439 (851)
Q Consensus 365 ~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivRp~~ 439 (851)
... .|. ...|+.||+..+.+.+.++. ++.+.+++||.
T Consensus 136 ~~~----------~~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~ 177 (254)
T 1zmt_A 136 FGP----------WKE----------------------------LSTYTSARAGACTLANALSKELGEYNIPVFAIGPNY 177 (254)
T ss_dssp TSC----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESS
T ss_pred ccC----------CCC----------------------------chHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCc
Confidence 321 111 13499999999988876542 89999999999
Q ss_pred ccCCCC
Q psy11859 440 VLPSFQ 445 (851)
Q Consensus 440 V~G~~~ 445 (851)
|+|+..
T Consensus 178 v~~~~~ 183 (254)
T 1zmt_A 178 LHSEDS 183 (254)
T ss_dssp BCCBTC
T ss_pred cccccc
Confidence 988753
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-13 Score=155.18 Aligned_cols=168 Identities=21% Similarity=0.215 Sum_probs=126.9
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+++||||||+|.||.++++.|++.|. ..|+++.|........+.+.+ .+. ....++.++.+|++|+
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~Ga--~~vvl~~R~~~~~~~~~~l~~--------~l~----~~g~~v~~~~~Dvtd~ 304 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQGA--AHLVLTSRRGADAPGAAELRA--------ELE----QLGVRVTIAACDAADR 304 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTTC--SEEEEEESSGGGSTTHHHHHH--------HHH----HTTCEEEEEECCTTCH
T ss_pred CCEEEEECCCCchHHHHHHHHHHCCC--cEEEEEeCCCCChHHHHHHHH--------HHH----hcCCeEEEEEccCCCH
Confidence 48999999999999999999999873 478888987543322222211 111 1234789999999998
Q ss_pred cCCCCHHHHHHHhc------CccEEEEccccC-Cc-------chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeee
Q psy11859 298 NLGIKDSDLLMLQE------EVSVVFNGAASL-KL-------EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAF 363 (851)
Q Consensus 298 ~lgls~~~~~~~~~------~vd~ViH~AA~~-~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~ 363 (851)
+ ++..+++ .+|+|||+||.. .. .+.+...+++|+.|+.++.+++...+ +.+||++||+.
T Consensus 305 ~------~v~~~~~~i~~~g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~-~~~iV~~SS~a 377 (496)
T 3mje_A 305 E------ALAALLAELPEDAPLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLD-LDAFVLFSSGA 377 (496)
T ss_dssp H------HHHHHHHTCCTTSCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSC-CSEEEEEEEHH
T ss_pred H------HHHHHHHHHHHhCCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccC-CCEEEEEeChH
Confidence 6 7776664 489999999976 22 23567889999999999999998774 88999999965
Q ss_pred eeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-CCCEEEEecccccC
Q psy11859 364 CHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-KLPVVIVRPSIVLP 442 (851)
Q Consensus 364 ~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-~l~~~ivRp~~V~G 442 (851)
+.-. .|.. ..|+.||+..+.+...... +++++.|.||.+.+
T Consensus 378 ~~~g----------~~g~----------------------------~~YaAaKa~ldala~~~~~~Gi~v~sV~pG~w~~ 419 (496)
T 3mje_A 378 AVWG----------SGGQ----------------------------PGYAAANAYLDALAEHRRSLGLTASSVAWGTWGE 419 (496)
T ss_dssp HHTT----------CTTC----------------------------HHHHHHHHHHHHHHHHHHHTTCCCEEEEECEESS
T ss_pred hcCC----------CCCc----------------------------HHHHHHHHHHHHHHHHHHhcCCeEEEEECCcccC
Confidence 4311 1111 2499999999999887655 99999999998876
Q ss_pred CC
Q psy11859 443 SF 444 (851)
Q Consensus 443 ~~ 444 (851)
+.
T Consensus 420 ~g 421 (496)
T 3mje_A 420 VG 421 (496)
T ss_dssp SC
T ss_pred Cc
Confidence 54
|
| >1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.2e-14 Score=121.20 Aligned_cols=80 Identities=19% Similarity=0.323 Sum_probs=71.3
Q ss_pred hhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCC----CccccCccccCccccCchhHHHhhhhcCCCCCcc
Q psy11859 706 VLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGE----RSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYP 781 (851)
Q Consensus 706 ~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~ge----kp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~ 781 (851)
.|..|+++|++++||+| +.|++.|.+...|..|++.|.++ ++|.|. .|++.|.+...|.+|+++|++++++.
T Consensus 2 s~~~H~~~H~~~k~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~ 77 (86)
T 1x6h_A 2 SSGSSGRTHTGEKPYAC--SHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCS--KCGKTFTRRNTMARHADNCAGPDGVE 77 (86)
T ss_dssp TTTCCSTTCCCCCCEEC--SSSSCEESSHHHHHHHHHHTTCSSCCCCCEECS--SSCCEESCHHHHHHHHHHCCCCCSCC
T ss_pred CcccccceecCCCCCcC--CCCCCccCCHHHHHHHHHHhcCCcCCCcceECC--CCCChhCCHHHHHHHHHHccCCCCcc
Confidence 46789999999999999 78999999999999999877665 789998 89999999999999999999999999
Q ss_pred CCCCCCcc
Q psy11859 782 CTLCVKKS 789 (851)
Q Consensus 782 C~~Cgk~f 789 (851)
|..||..+
T Consensus 78 ~~~~~~~~ 85 (86)
T 1x6h_A 78 GENSGPSS 85 (86)
T ss_dssp CCCCCCCC
T ss_pred cCCCCCCC
Confidence 99998864
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5.1e-13 Score=152.33 Aligned_cols=169 Identities=17% Similarity=0.155 Sum_probs=121.2
Q ss_pred hhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 213 ARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 213 ~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
...++|+++|||||+|.||..+++.|++.| .+|+++.|... .+.+.+... + .++.++.+
T Consensus 208 ~~~l~gk~~LVTGgsgGIG~aiA~~La~~G---a~Vvl~~r~~~----~~~l~~~~~---------~-----~~~~~~~~ 266 (454)
T 3u0b_A 208 DKPLDGKVAVVTGAARGIGATIAEVFARDG---ATVVAIDVDGA----AEDLKRVAD---------K-----VGGTALTL 266 (454)
T ss_dssp TSTTTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEECGGG----HHHHHHHHH---------H-----HTCEEEEC
T ss_pred ccCCCCCEEEEeCCchHHHHHHHHHHHHCC---CEEEEEeCCcc----HHHHHHHHH---------H-----cCCeEEEE
Confidence 344689999999999999999999999998 67888888642 222222111 0 14678999
Q ss_pred CCCCCcCCCCHHHHHHHhc--------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhcC---Cce
Q psy11859 293 DILQANLGIKDSDLLMLQE--------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKMK---KLV 354 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~~--------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~---~~~ 354 (851)
|++|++ ++..+++ .+|+|||+|+.... .+.++..+++|+.|+.++.+++.... ...
T Consensus 267 Dvtd~~------~v~~~~~~~~~~~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g 340 (454)
T 3u0b_A 267 DVTADD------AVDKITAHVTEHHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGG 340 (454)
T ss_dssp CTTSTT------HHHHHHHHHHHHSTTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTC
T ss_pred ecCCHH------HHHHHHHHHHHHcCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Confidence 999987 5555543 39999999997643 24567889999999999999997641 367
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHH----HhC-C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDE----YKT-K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~----~~~-~ 429 (851)
+||++||..+... .... ..|+.||+..+.++.. +.. +
T Consensus 341 ~iV~iSS~a~~~g---------~~g~-----------------------------~~YaasKaal~~l~~~la~e~~~~g 382 (454)
T 3u0b_A 341 RVIGLSSMAGIAG---------NRGQ-----------------------------TNYATTKAGMIGLAEALAPVLADKG 382 (454)
T ss_dssp EEEEECCHHHHHC---------CTTC-----------------------------HHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEEEeChHhCCC---------CCCC-----------------------------HHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 9999999654311 0111 3499999965555544 444 8
Q ss_pred CCEEEEecccccCCCCC
Q psy11859 430 LPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 430 l~~~ivRp~~V~G~~~~ 446 (851)
+++.+|.||.|..+...
T Consensus 383 I~vn~v~PG~v~T~~~~ 399 (454)
T 3u0b_A 383 ITINAVAPGFIETKMTE 399 (454)
T ss_dssp CEEEEEEECSBCC----
T ss_pred cEEEEEEcCcccChhhh
Confidence 99999999999876543
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=9.6e-13 Score=143.39 Aligned_cols=163 Identities=17% Similarity=0.145 Sum_probs=112.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCC----CCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEE
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKR----GLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIE 291 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~----~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~ 291 (851)
++||+||||||+|+||+++++.|++.| .+|++++|... +.. .++..++ .+.++... . .+.
T Consensus 7 l~gk~~lVTGas~GIG~~~a~~La~~G---a~Vv~~~~~~~~~~~~R~-~~~~~~~-----~~~l~~~~----~---~~~ 70 (319)
T 1gz6_A 7 FDGRVVLVTGAGGGLGRAYALAFAERG---ALVVVNDLGGDFKGVGKG-SSAADKV-----VEEIRRRG----G---KAV 70 (319)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEECCCBCTTSCBCC-SHHHHHH-----HHHHHHTT----C---EEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEcCCcccccccCC-HHHHHHH-----HHHHHhhC----C---eEE
Confidence 578999999999999999999999998 68888776421 000 1122111 11122111 1 134
Q ss_pred cCCCCCcCCCCHHHHHHH-------hcCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh----cCCc
Q psy11859 292 GDILQANLGIKDSDLLML-------QEEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK----MKKL 353 (851)
Q Consensus 292 gDi~~~~lgls~~~~~~~-------~~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~----~~~~ 353 (851)
+|+++.+ ++..+ ..++|+|||+||.... .+.++..+++|+.|+.++++++.. . +.
T Consensus 71 ~D~~~~~------~~~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~ 143 (319)
T 1gz6_A 71 ANYDSVE------AGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQ-NY 143 (319)
T ss_dssp EECCCGG------GHHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred EeCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CC
Confidence 7988875 33333 2379999999997543 135678899999999999988743 3 35
Q ss_pred eEEEEeeeeee-eCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----
Q psy11859 354 VAFIHFSTAFC-HPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT---- 428 (851)
Q Consensus 354 ~~fV~vSTa~~-~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~---- 428 (851)
.++|++||..+ ++. .+. ..|+.||+..+.+...++.
T Consensus 144 grIV~vsS~~~~~~~----------~~~-----------------------------~~Y~aSK~a~~~~~~~la~el~~ 184 (319)
T 1gz6_A 144 GRIIMTASASGIYGN----------FGQ-----------------------------ANYSAAKLGLLGLANTLVIEGRK 184 (319)
T ss_dssp EEEEEECCHHHHHCC----------TTC-----------------------------HHHHHHHHHHHHHHHHHHHHTGG
T ss_pred CEEEEECChhhccCC----------CCC-----------------------------HHHHHHHHHHHHHHHHHHHHhcc
Confidence 79999999643 221 111 3499999999998876642
Q ss_pred -CCCEEEEecccc
Q psy11859 429 -KLPVVIVRPSIV 440 (851)
Q Consensus 429 -~l~~~ivRp~~V 440 (851)
++.+.+++||.+
T Consensus 185 ~gI~vn~v~PG~~ 197 (319)
T 1gz6_A 185 NNIHCNTIAPNAG 197 (319)
T ss_dssp GTEEEEEEEEECC
T ss_pred cCEEEEEEeCCCc
Confidence 899999999987
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.42 E-value=5e-13 Score=139.84 Aligned_cols=160 Identities=14% Similarity=0.077 Sum_probs=109.0
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEE-e--cCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYIL-C--RAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l-~--R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
||+||||||+|+||++++++|++.| .+|+++ . |... ++.++ .++. ....++ |.
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~~~~r~~~------~~~~~---------~~~~----~~~~~~--~~ 56 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDG---YTVVCHDASFADAA------ERQRF---------ESEN----PGTIAL--AE 56 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTT---CEEEECCGGGGSHH------HHHHH---------HHHS----TTEEEC--CC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CEEEEecCCcCCHH------HHHHH---------HHHh----CCCccc--CH
Confidence 5899999999999999999999998 688888 5 7532 22211 1110 122222 32
Q ss_pred CCCcCCCCHHHHHHHh---cCccEEEEccccCCc----------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 295 LQANLGIKDSDLLMLQ---EEVSVVFNGAASLKL----------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~---~~vd~ViH~AA~~~~----------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
.+.. ..++.+. .++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|+
T Consensus 57 ~~v~-----~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~ 131 (244)
T 1zmo_A 57 QKPE-----RLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIF 131 (244)
T ss_dssp CCGG-----GHHHHHGGGSSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHH-----HHHHHHHHHcCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 2221 1222222 379999999997543 2456788999999999999988631 13579999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... ..+. ..|+.||+..+.+.+.++. ++.+.
T Consensus 132 isS~~~~~~---------~~~~-----------------------------~~Y~asK~a~~~~~~~la~e~~~~gi~v~ 173 (244)
T 1zmo_A 132 ITSSVGKKP---------LAYN-----------------------------PLYGPARAATVALVESAAKTLSRDGILLY 173 (244)
T ss_dssp ECCGGGTSC---------CTTC-----------------------------TTHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred ECChhhCCC---------CCCc-----------------------------hHHHHHHHHHHHHHHHHHHHHhhcCcEEE
Confidence 999755421 1111 3499999999998876542 89999
Q ss_pred EEecccccCCC
Q psy11859 434 IVRPSIVLPSF 444 (851)
Q Consensus 434 ivRp~~V~G~~ 444 (851)
+++||.|-.+.
T Consensus 174 ~v~PG~v~T~~ 184 (244)
T 1zmo_A 174 AIGPNFFNNPT 184 (244)
T ss_dssp EEEESSBCBTT
T ss_pred EEeeCCCcCCc
Confidence 99999987664
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-12 Score=150.18 Aligned_cols=169 Identities=17% Similarity=0.150 Sum_probs=123.2
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEE-ecCCCC----------CCHHHHHHHHhcChhhHHHhhhCcc
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYIL-CRAKRG----------LTPKARLAEFSKLPVFERLRKECPA 282 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l-~R~~~~----------~~~~~rl~~~~~~~~f~~l~~~~~~ 282 (851)
.+-.+++||||||+|.||.++++.|++.|. ..|+++ .|+... ....+.+ .+.|. .
T Consensus 247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~--~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~--------~~~l~----~ 312 (525)
T 3qp9_A 247 WWQADGTVLVTGAEEPAAAEAARRLARDGA--GHLLLHTTPSGSEGAEGTSGAAEDSGLAGL--------VAELA----D 312 (525)
T ss_dssp SSCTTSEEEESSTTSHHHHHHHHHHHHHTC--CEEEEEECCCC---------------CHHH--------HHHHH----H
T ss_pred eecCCCEEEEECCCCcHHHHHHHHHHHcCC--CEEEEEeCCCCCCccccccccccCHHHHHH--------HHHHH----h
Confidence 466789999999999999999999999984 346666 776432 1111111 11121 1
Q ss_pred cCCCeEEEEcCCCCCcCCCCHHHHHHHhc------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh
Q psy11859 283 QLSRLHIIEGDILQANLGIKDSDLLMLQE------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK 349 (851)
Q Consensus 283 ~~~~v~~v~gDi~~~~lgls~~~~~~~~~------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~ 349 (851)
...++.++.+|++|++ ++..+++ .+|+|||+||.... .+.+...+++|+.|+.+|.+++..
T Consensus 313 ~g~~v~~~~~Dvtd~~------~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~ 386 (525)
T 3qp9_A 313 LGATATVVTCDLTDAE------AAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLRE 386 (525)
T ss_dssp HTCEEEEEECCTTSHH------HHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCHH------HHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2347899999999987 7777765 47999999997643 245678899999999999999987
Q ss_pred cCC----ceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHH
Q psy11859 350 MKK----LVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDE 425 (851)
Q Consensus 350 ~~~----~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~ 425 (851)
... ...||++||+.+.-. .|. ...|+.+|+..+.+..+
T Consensus 387 ~~~~~~~~~~iV~~SS~a~~~g----------~~g----------------------------~~~YaaaKa~l~~lA~~ 428 (525)
T 3qp9_A 387 AAAAGGRPPVLVLFSSVAAIWG----------GAG----------------------------QGAYAAGTAFLDALAGQ 428 (525)
T ss_dssp TC----CCCEEEEEEEGGGTTC----------CTT----------------------------CHHHHHHHHHHHHHHTS
T ss_pred ccccCCCCCEEEEECCHHHcCC----------CCC----------------------------CHHHHHHHHHHHHHHHH
Confidence 531 679999999654321 111 13499999999998766
Q ss_pred HhC-CCCEEEEecccc
Q psy11859 426 YKT-KLPVVIVRPSIV 440 (851)
Q Consensus 426 ~~~-~l~~~ivRp~~V 440 (851)
... +++++.|.||.+
T Consensus 429 ~~~~gi~v~sI~pG~~ 444 (525)
T 3qp9_A 429 HRADGPTVTSVAWSPW 444 (525)
T ss_dssp CCSSCCEEEEEEECCB
T ss_pred HHhCCCCEEEEECCcc
Confidence 655 999999999988
|
| >1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.7e-13 Score=117.10 Aligned_cols=81 Identities=12% Similarity=0.031 Sum_probs=75.2
Q ss_pred CCCCCCceeeeeccceeecCCccccchhhhhhhcccccCCc----ccccccCCccCccccChhhHHHHHhhhcCCCcccc
Q psy11859 677 GQIRSNRFWHYFFVIFTQILPAYLVDFIMVLIRQKTFENLV----RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752 (851)
Q Consensus 677 ~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~----r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C 752 (851)
+++.+|++.|++.+||.|..|++.|.....|..|++.|... ++|+| +.|++.|.....|..|+++|++++++.|
T Consensus 1 Gs~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C--~~C~~~f~~~~~L~~H~~~h~~~~~~~~ 78 (86)
T 1x6h_A 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVC--SKCGKTFTRRNTMARHADNCAGPDGVEG 78 (86)
T ss_dssp CTTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEEC--SSSCCEESCHHHHHHHHHHCCCCCSCCC
T ss_pred CCcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceEC--CCCCChhCCHHHHHHHHHHccCCCCccc
Confidence 57899999999999999999999999999999998876654 89999 8899999999999999999999999999
Q ss_pred CccccCccc
Q psy11859 753 DWQDCKWQF 761 (851)
Q Consensus 753 ~~~~C~k~F 761 (851)
. .|+.+|
T Consensus 79 ~--~~~~~~ 85 (86)
T 1x6h_A 79 E--NSGPSS 85 (86)
T ss_dssp C--CCCCCC
T ss_pred C--CCCCCC
Confidence 8 898765
|
| >2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=4.5e-13 Score=113.53 Aligned_cols=70 Identities=34% Similarity=0.645 Sum_probs=55.2
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C 782 (851)
.+...+.+++||+| +.|++.|.....|..|+++|++++||.|. .|++.|.+...|.+|+++|++++||.|
T Consensus 8 ~~~~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~L~~H~~~H~~~~p~~C 77 (77)
T 2cot_A 8 RSEWQQRERRRYKC--DECGKSFSHSSDLSKHRRTHTGEKPYKCD--ECGKAFIQRSHLIGHHRVHTGSGPSSG 77 (77)
T ss_dssp CCCSCCCCSCSSBC--SSSCCBCSCHHHHHHHHTTTCCSCSEECS--SSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred CCcCcCCCCCCEEC--CCCCcccCCHHHHHHHHHHcCCCcCeeCC--CCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence 44556677788888 67888888888888888888888888887 788888888888888888888888876
|
| >2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.6e-13 Score=114.09 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=68.6
Q ss_pred CCCCCCceeeeeccceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCcccc
Q psy11859 677 GQIRSNRFWHYFFVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752 (851)
Q Consensus 677 ~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C 752 (851)
+....+...|.+.++|.|..|++.|.....|..|+++|++++||+| +.|++.|.....|..|+++|++++||.|
T Consensus 4 g~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~L~~H~~~H~~~~p~~C 77 (77)
T 2cot_A 4 GSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQRSHLIGHHRVHTGSGPSSG 77 (77)
T ss_dssp CCCCCCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEEC--SSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred CCCCCCcCcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeC--CCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence 3445566778889999999999999999999999999999999999 8899999999999999999999999998
|
| >2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.4e-13 Score=117.05 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=73.5
Q ss_pred ceee--cCCccccchhhhhhhcccccCCcccccccCCc--cCccccChhhHHHHHhhhcCCCccccCccc---cCccccC
Q psy11859 691 IFTQ--ILPAYLVDFIMVLIRQKTFENLVRTFQCTYPE--CLKFYAKMSHLKAHLRRHSGERSFKCDWQD---CKWQFSR 763 (851)
Q Consensus 691 ~~~c--~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~--Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~---C~k~F~~ 763 (851)
||.| +.|++.|.....|..|+++|++++||+| +. |++.|.+...|..|+++|++ |.|. . |++.|.+
T Consensus 1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~~~C~~~f~~~~~l~~H~~~h~~---~~C~--~~~~C~~~f~~ 73 (85)
T 2j7j_A 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC--PHEGCDKRFSLPSRLKRHEKVHAG---YPCK--KDDSCSFVGKT 73 (85)
T ss_dssp CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEEC--CSTTCCCEESSHHHHHHHHHHHHS---EECC--SCSSCCCEESS
T ss_pred CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeC--CCCCCcCccCCHHHHHHHHHHhCC---CCCC--CCCCCCCccCC
Confidence 6899 9999999999999999999999999999 67 99999999999999999998 9998 7 9999999
Q ss_pred chhHHHhhhhcC
Q psy11859 764 SDELSRHRRSHF 775 (851)
Q Consensus 764 ~~~L~~H~r~H~ 775 (851)
...|.+|+++|+
T Consensus 74 ~~~l~~H~~~hh 85 (85)
T 2j7j_A 74 WTLYLKHVAECH 85 (85)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
|
| >2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-13 Score=121.26 Aligned_cols=83 Identities=18% Similarity=0.213 Sum_probs=73.7
Q ss_pred ccccchhhhhhhcccccCCcccccccCCccCcccc-ChhhHHHHHhhhcC-CCccccCccccCccccCchhHHHhhhhcC
Q psy11859 698 AYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYA-KMSHLKAHLRRHSG-ERSFKCDWQDCKWQFSRSDELSRHRRSHF 775 (851)
Q Consensus 698 ~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~-~~~~L~~H~~~H~g-ekp~~C~~~~C~k~F~~~~~L~~H~r~H~ 775 (851)
+.++.....+..|+++|+++++|+| +.|++.|. ....|..|+++|++ ++||.|. .|++.|.+...|.+|+++|+
T Consensus 3 s~s~~~~~~~~~h~~~h~~~~~~~C--~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~--~C~k~F~~~~~L~~H~~~h~ 78 (98)
T 2gqj_A 3 SGSSGPGGPEEQWQRAIHERGEAVC--PTCNVVTRKTLVGLKKHMEVCQKLQDALKCQ--HCRKQFKSKAGLNYHTMAEH 78 (98)
T ss_dssp CCCCCCCCSCSHHHHTTTTTSCCCC--TTTCCCCSSCSHHHHHHHHHHHHHHHHHSCS--SSCCCCSCHHHHHHHHHHHS
T ss_pred CCCCCCCCcHHHHHHHhccCCCcCC--CCCCCChhhhHHHHHHHHHHHcCCCCCEECC--CCCCccCCHHHHHHHHHHHc
Confidence 4456666778899999999999999 88999999 99999999999998 9999998 89999999999999999999
Q ss_pred CCCCccCCC
Q psy11859 776 GIKPYPCTL 784 (851)
Q Consensus 776 gekp~~C~~ 784 (851)
+++|.....
T Consensus 79 ~~kp~~~~~ 87 (98)
T 2gqj_A 79 SAKPSDAEA 87 (98)
T ss_dssp CSCSSCCCC
T ss_pred CCCCCCCCC
Confidence 999865543
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-11 Score=127.87 Aligned_cols=163 Identities=20% Similarity=0.246 Sum_probs=124.4
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
+.|+||++|||||++=||+.+++.|++.| .+|++.+|...... .....++..+.+|
T Consensus 7 dlf~GK~alVTGas~GIG~aia~~la~~G---a~Vv~~~~~~~~~~---------------------~~~~~~~~~~~~D 62 (242)
T 4b79_A 7 DIYAGQQVLVTGGSSGIGAAIAMQFAELG---AEVVALGLDADGVH---------------------APRHPRIRREELD 62 (242)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSTTSTT---------------------SCCCTTEEEEECC
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHh---------------------hhhcCCeEEEEec
Confidence 45799999999999999999999999999 78999999765421 0123478999999
Q ss_pred CCCCcCCCCHHHHHHHhc---CccEEEEccccCCcc-----hhHHHHHHHHHHHHHHHHHHHHhcC--CceEEEEeeeee
Q psy11859 294 ILQANLGIKDSDLLMLQE---EVSVVFNGAASLKLE-----AELKENVAANTRGTQRLLDIALKMK--KLVAFIHFSTAF 363 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~---~vd~ViH~AA~~~~~-----~~~~~~~~~Nv~Gt~~ll~~a~~~~--~~~~fV~vSTa~ 363 (851)
++|++ +++.+++ ++|++||+||..... +.++..+++|+.|+..+.+++..+= +--++|.+||..
T Consensus 63 v~~~~------~v~~~~~~~g~iDiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~ 136 (242)
T 4b79_A 63 ITDSQ------RLQRLFEALPRLDVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMY 136 (242)
T ss_dssp TTCHH------HHHHHHHHCSCCSEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGG
T ss_pred CCCHH------HHHHHHHhcCCCCEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 99986 6665554 799999999975432 4577889999999999988875431 125899999975
Q ss_pred eeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEEEEecc
Q psy11859 364 CHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVVIVRPS 438 (851)
Q Consensus 364 ~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ivRp~ 438 (851)
+.. +.|.. ..|+.||+.-..+.+..+ + ++.+-.|-||
T Consensus 137 ~~~----------~~~~~----------------------------~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG 178 (242)
T 4b79_A 137 STF----------GSADR----------------------------PAYSASKGAIVQLTRSLACEYAAERIRVNAIAPG 178 (242)
T ss_dssp GTS----------CCSSC----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred ccC----------CCCCC----------------------------HHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeC
Confidence 432 11211 249999998888776553 3 8999999999
Q ss_pred cccCCC
Q psy11859 439 IVLPSF 444 (851)
Q Consensus 439 ~V~G~~ 444 (851)
.|--|.
T Consensus 179 ~i~T~m 184 (242)
T 4b79_A 179 WIDTPL 184 (242)
T ss_dssp SBCCC-
T ss_pred CCCChh
Confidence 987664
|
| >2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A | Back alignment and structure |
|---|
Probab=99.34 E-value=8.1e-13 Score=113.64 Aligned_cols=67 Identities=31% Similarity=0.710 Sum_probs=61.4
Q ss_pred cccccCCccCccccChhhHHHHHhhhcCCCccccCccc--cCccccCchhHHHhhhhcCCCCCccCCC---CCCccc
Q psy11859 719 TFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQD--CKWQFSRSDELSRHRRSHFGIKPYPCTL---CVKKSL 790 (851)
Q Consensus 719 ~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~--C~k~F~~~~~L~~H~r~H~gekp~~C~~---Cgk~f~ 790 (851)
||+|.++.|++.|...+.|..|+++|++++||.|+ . |++.|.+...|.+|+++|++ |.|+. |++.|.
T Consensus 1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~ 72 (85)
T 2j7j_A 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP--HEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGK 72 (85)
T ss_dssp CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECC--STTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEES
T ss_pred CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCC--CCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccC
Confidence 68886678999999999999999999999999997 7 99999999999999999998 99998 777553
|
| >2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.5e-13 Score=113.32 Aligned_cols=72 Identities=22% Similarity=0.250 Sum_probs=67.5
Q ss_pred eeccceeecC--Cccccchhhhhhhccc-ccCCcccccccCCc--cCccccChhhHHHHHhhhcCCCccccCccccCccc
Q psy11859 687 YFFVIFTQIL--PAYLVDFIMVLIRQKT-FENLVRTFQCTYPE--CLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQF 761 (851)
Q Consensus 687 ~~~~~~~c~~--c~~~~~~~~~l~~h~~-~h~~~r~~~C~~~~--Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F 761 (851)
++.++|.|.. |++.|.+...|..|++ .|++++||+| +. |++.|.+...|..|+++|++++||.|+ .|++.|
T Consensus 3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C--~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C~k~F 78 (79)
T 2dlk_A 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSC--PEPACGKSFNFKKHLKEHMKLHSDTRDYICE--FSGPSS 78 (79)
T ss_dssp SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEEC--SCTTTCCEESSHHHHHHHHHHHHTSCCCSCC--SSSCCC
T ss_pred CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeEC--CCCCCcCccCCHHHHHHHHHHhCCCCCeeCC--CCCCCC
Confidence 4678899997 9999999999999998 8999999999 66 999999999999999999999999998 899988
Q ss_pred c
Q psy11859 762 S 762 (851)
Q Consensus 762 ~ 762 (851)
.
T Consensus 79 ~ 79 (79)
T 2dlk_A 79 G 79 (79)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.3e-13 Score=127.54 Aligned_cols=114 Identities=14% Similarity=0.077 Sum_probs=85.9
Q ss_pred eeeeeccceeecCCccccch--hhhhhhcccccCCcccccccCCccCcccc------ChhhHHHHHhhhcCCCccccCcc
Q psy11859 684 FWHYFFVIFTQILPAYLVDF--IMVLIRQKTFENLVRTFQCTYPECLKFYA------KMSHLKAHLRRHSGERSFKCDWQ 755 (851)
Q Consensus 684 ~~h~~~~~~~c~~c~~~~~~--~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~------~~~~L~~H~~~H~gekp~~C~~~ 755 (851)
.+|++.++|.|..++..... ...+..| .....++++.| +.|++.|. ....|..|+ .|++++||.|+
T Consensus 5 ~~~~~~k~~~~~~k~~~~~~s~ee~~~~~-~l~~~~~~~~c--~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~-- 78 (129)
T 2wbt_A 5 DVDSGSKKYLSNHKGIFIHVTLEELKRYH-QLTPEQKRLIR--AIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCP-- 78 (129)
T ss_dssp CCCTTCCGGGGCSSCEEEECCHHHHHHHT-TSCHHHHHHHH--HHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECT--
T ss_pred hhcccccccccccCCeeeeecHHhhhccc-cCChhhCcccc--hhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECC--
Confidence 35677888887776554432 2222223 33445688889 77877766 556666666 68999999998
Q ss_pred ccCccccCchhHHHhhhhcCCCCCccCCCCCCccccccccCCcccccCcccccccccCCCCCCccChHHHHHHHHhhcCC
Q psy11859 756 DCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVHERQ 835 (851)
Q Consensus 756 ~C~k~F~~~~~L~~H~r~H~gekp~~C~~Cgk~f~~~~~~~~H~~~C~k~f~~~~~~~~~~~pf~Ck~~L~~H~r~Htge 835 (851)
.|++.|.+...|..|+++| ++||.|+.||+.|.. ++.|..|+++|+|.
T Consensus 79 ~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~------------------------------~~~l~~H~~~h~~~ 126 (129)
T 2wbt_A 79 LCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTS------------------------------TDSALDHVCKKHNI 126 (129)
T ss_dssp TTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSS------------------------------HHHHHHHHHHTTCC
T ss_pred CCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCC------------------------------HHHHHHHHHHHCCc
Confidence 8999999999999999999 899999999987643 35899999999875
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-11 Score=129.74 Aligned_cols=166 Identities=16% Similarity=0.165 Sum_probs=122.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||++=||+.+++.|++.| .+|++.+|... +++++ -+.++ ....++.++.+|++
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~G---a~Vv~~~~~~~------~~~~~-----~~~i~----~~g~~~~~~~~Dvt 66 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALND---SIVVAVELLED------RLNQI-----VQELR----GMGKEVLGVKADVS 66 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHH----HTTCCEEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEECCHH------HHHHH-----HHHHH----hcCCcEEEEEccCC
Confidence 689999999999999999999999998 78999888642 22221 11121 22347899999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCC----cc----hhHHHHHHHHHHHHHHHHHHHHhc---CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLK----LE----AELKENVAANTRGTQRLLDIALKM---KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~----~~----~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV 357 (851)
+++ +++.++ .++|++||.||... +. +.++..+++|+.|+..+.+++... .+--++|
T Consensus 67 ~~~------~v~~~~~~~~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV 140 (254)
T 4fn4_A 67 KKK------DVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIV 140 (254)
T ss_dssp SHH------HHHHHHHHHHHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEE
Confidence 987 666554 37899999999542 22 467789999999999998887642 1236899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~ 432 (851)
.+||..+... .|.. ..|+.||+.-..+.+..+ + ++.+
T Consensus 141 nisS~~g~~~----------~~~~----------------------------~~Y~asKaal~~ltr~lA~ela~~gIrV 182 (254)
T 4fn4_A 141 NTASIAGIRG----------GFAG----------------------------APYTVAKHGLIGLTRSIAAHYGDQGIRA 182 (254)
T ss_dssp EECCGGGTCS----------SSSC----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEechhhcCC----------CCCC----------------------------hHHHHHHHHHHHHHHHHHHHhhhhCeEE
Confidence 9999654321 1111 239999998887776553 3 8999
Q ss_pred EEEecccccCC
Q psy11859 433 VIVRPSIVLPS 443 (851)
Q Consensus 433 ~ivRp~~V~G~ 443 (851)
..|-||.|--+
T Consensus 183 N~V~PG~i~T~ 193 (254)
T 4fn4_A 183 VAVLPGTVKTN 193 (254)
T ss_dssp EEEEECSBCSS
T ss_pred EEEEeCCCCCc
Confidence 99999998655
|
| >1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A | Back alignment and structure |
|---|
Probab=99.31 E-value=6.9e-14 Score=121.90 Aligned_cols=81 Identities=14% Similarity=0.047 Sum_probs=73.7
Q ss_pred ccceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHH
Q psy11859 689 FVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELS 768 (851)
Q Consensus 689 ~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~ 768 (851)
++||.|..|++.|.....|..|+++|++++||.| +.|++.|.....|..|++.|.+ .+|.|. .|++.|.+...|.
T Consensus 1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~h~~-~~~~c~--~C~~~f~~~~~L~ 75 (88)
T 1llm_C 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHRDIQHI-LPILED--KVEELLSKNYHLE 75 (88)
T ss_dssp CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEEC--TTTCCEESSHHHHHHHHHHHTH-HHHHHH--HHHHHHHHHHHHH
T ss_pred CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccC--CCCCCccCCHHHHHHHHHHhCC-CcchHH--HHHHHHHHHhhhH
Confidence 3689999999999999999999999999999999 7899999999999999999885 889998 8999999999999
Q ss_pred Hhhhhc
Q psy11859 769 RHRRSH 774 (851)
Q Consensus 769 ~H~r~H 774 (851)
.|++.+
T Consensus 76 ~H~~~~ 81 (88)
T 1llm_C 76 NEVARL 81 (88)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
|
| >2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=8.9e-13 Score=118.03 Aligned_cols=72 Identities=21% Similarity=0.417 Sum_probs=64.5
Q ss_pred cccCCcccccccCCccCccccChhhHHHHHh-hh---cCCCccccCccccCccccCchhHHHh-hhhcCCCCCccCCCCC
Q psy11859 712 TFENLVRTFQCTYPECLKFYAKMSHLKAHLR-RH---SGERSFKCDWQDCKWQFSRSDELSRH-RRSHFGIKPYPCTLCV 786 (851)
Q Consensus 712 ~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~-~H---~gekp~~C~~~~C~k~F~~~~~L~~H-~r~H~gekp~~C~~Cg 786 (851)
.-.+|++||.| +.||+.|.+.+.|..|++ .| ++++||.|. .||+.|.++..|.+| +++|+|++||.|..+.
T Consensus 11 ~~~~gekpy~C--~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~--~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~ 86 (102)
T 2ghf_A 11 QNKKVEGGYEC--KYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCV--ECNFLTKRYDALSEHNLKYHPGEENFKLTMVK 86 (102)
T ss_dssp TCCCCCSSEEC--SSCSCEESCHHHHHHHHHHHCSSCCCSCCEEET--TTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred ccCCCCcCcCC--CCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCC--CCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence 45578999999 889999999999999997 59 668999998 899999999999999 8999999999999866
Q ss_pred C
Q psy11859 787 K 787 (851)
Q Consensus 787 k 787 (851)
+
T Consensus 87 ~ 87 (102)
T 2ghf_A 87 R 87 (102)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-12 Score=108.62 Aligned_cols=65 Identities=31% Similarity=0.685 Sum_probs=57.2
Q ss_pred cccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCc
Q psy11859 712 TFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPY 780 (851)
Q Consensus 712 ~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~ 780 (851)
..++++++|+| +.|++.|.+...|..|+++|++++||.|. .|++.|.+...|.+|+++|++++||
T Consensus 10 ~~~~~~~~~~C--~~C~k~f~~~~~l~~H~~~H~~~~~~~C~--~C~k~f~~~~~L~~H~~~H~~~kp~ 74 (74)
T 2lce_A 10 HMTHSDKPYKC--DRCQASFRYKGNLASHKTVHTGEKPYRCN--ICGAQFNRPANLKTHTRIHSGEKPY 74 (74)
T ss_dssp -CCCCCCSBCC--TTSSCCBSCHHHHHHHHHHHCCCCSEECT--TTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred cccCCCCCeEC--CCCCceeCCHHHHHHHHHHcCCCCCEECC--CCCchhCCHHHHHHHHHhcCCCCCC
Confidence 46778889999 78999999999999999999999999997 8999999999999999999998886
|
| >1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-13 Score=119.25 Aligned_cols=70 Identities=34% Similarity=0.655 Sum_probs=64.9
Q ss_pred cccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCCCCcccc
Q psy11859 717 VRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLL 791 (851)
Q Consensus 717 ~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~Cgk~f~~ 791 (851)
++||+| +.|++.|.+.+.|..|+++|++++||.|+ .|++.|.+...|.+|++.|++ .+|.|+.|++.|..
T Consensus 1 ek~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~ 70 (88)
T 1llm_C 1 MKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFACD--ICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSK 70 (88)
T ss_dssp CCCEEC--TTTCCEESCHHHHHHHHHHHHCCCCEECT--TTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHH
T ss_pred CCCCcC--CCCCCccCCHHHHHHHHHHcCCCCCccCC--CCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHH
Confidence 589999 89999999999999999999999999998 899999999999999999985 78999988886644
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-11 Score=129.27 Aligned_cols=167 Identities=18% Similarity=0.174 Sum_probs=122.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||++=||+.+++.|++.| .+|++.+|... ++++. -+.+.+ ...++.++.+|++
T Consensus 7 L~gKvalVTGas~GIG~aia~~la~~G---a~Vvi~~~~~~------~~~~~-----~~~l~~----~g~~~~~~~~Dv~ 68 (255)
T 4g81_D 7 LTGKTALVTGSARGLGFAYAEGLAAAG---ARVILNDIRAT------LLAES-----VDTLTR----KGYDAHGVAFDVT 68 (255)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEECCSCHH------HHHHH-----HHHHHH----TTCCEEECCCCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHH-----HHHHHh----cCCcEEEEEeeCC
Confidence 689999999999999999999999999 78998888542 22211 111221 2247889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh-c---CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK-M---KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~-~---~~~~~fV 357 (851)
|++ +.+.+++ ++|++||+||.... .+.++..+++|+.|+..+.+++.. + +.--++|
T Consensus 69 ~~~------~v~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IV 142 (255)
T 4g81_D 69 DEL------AIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKII 142 (255)
T ss_dssp CHH------HHHHHHHHHHHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CHH------HHHHHHHHHHHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEE
Confidence 986 6555432 68999999997543 246788999999999999887743 2 2236899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~ 432 (851)
.+||..+.. +.|.. ..|+.||+.-..+.+..+ + ++.+
T Consensus 143 nisS~~~~~----------~~~~~----------------------------~~Y~asKaal~~ltr~lA~ela~~gIrV 184 (255)
T 4g81_D 143 NIGSLTSQA----------ARPTV----------------------------APYTAAKGGIKMLTCSMAAEWAQFNIQT 184 (255)
T ss_dssp EECCGGGTS----------BCTTC----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEeehhhcC----------CCCCc----------------------------hhHHHHHHHHHHHHHHHHHHhcccCeEE
Confidence 999965532 11211 249999998887776553 3 8999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
-.|-||.|-.+.
T Consensus 185 N~V~PG~i~T~~ 196 (255)
T 4g81_D 185 NAIGPGYILTDM 196 (255)
T ss_dssp EEEEECSBCCGG
T ss_pred EEEeeCCCCCch
Confidence 999999997664
|
| >2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-12 Score=115.09 Aligned_cols=79 Identities=16% Similarity=0.213 Sum_probs=71.0
Q ss_pred cccchhhhhhhcccccCCcccccccCCccCccc-cChhhHHHHHhhhcCCCccccCccccCccccCchhHHHh-hhhcCC
Q psy11859 699 YLVDFIMVLIRQKTFENLVRTFQCTYPECLKFY-AKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRH-RRSHFG 776 (851)
Q Consensus 699 ~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F-~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H-~r~H~g 776 (851)
-.+.....|..|+++|.+++||.| +.|++.| .+...|..|+++| +++||.|. .|++.|.+...|..| +++|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~C--~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~--~Cgk~F~~~~~L~~H~~~~H~~ 88 (96)
T 2ctd_A 14 PVYAAGSLEEQWYLEIVDKGSVSC--PTCQAVGRKTIEGLKKHMENC-KQEMFTCH--HCGKQLRSLAGMKYHVMANHNS 88 (96)
T ss_dssp CSSCTTCHHHHHHHHHHHTSCEEC--TTTCSCEESSHHHHHHHHHHH-CCCCCCCS--SSCCCCSSHHHHHHHHHHHTCC
T ss_pred CCCCCchHHHHHHHHhcCCCCcCC--CCCCCCcccCHHHHHHHHHHH-CCCCeECC--CCCCeeCCHHHHHHHhHHhcCC
Confidence 456777889999999999999999 8899999 9999999999999 99999998 899999999999999 999987
Q ss_pred CCCccC
Q psy11859 777 IKPYPC 782 (851)
Q Consensus 777 ekp~~C 782 (851)
+..|.+
T Consensus 89 ~p~~~~ 94 (96)
T 2ctd_A 89 LPSGPS 94 (96)
T ss_dssp CSSCSC
T ss_pred CCCCCC
Confidence 655544
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=8.4e-11 Score=122.56 Aligned_cols=162 Identities=21% Similarity=0.253 Sum_probs=119.4
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+|+||||||++=||+.+++.|++.| .+|.+.+|.+ +++.++. + ...++.++.+|++|+
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~G---a~V~~~~~~~------~~~~~~~---------~----~~~~~~~~~~Dv~~~ 59 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAG---DKVCFIDIDE------KRSADFA---------K----ERPNLFYFHGDVADP 59 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCH------HHHHHHH---------T----TCTTEEEEECCTTSH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC---CEEEEEeCCH------HHHHHHH---------H----hcCCEEEEEecCCCH
Confidence 5899999999999999999999999 7899998863 2222221 1 124788999999998
Q ss_pred cCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEeee
Q psy11859 298 NLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM--KKLVAFIHFST 361 (851)
Q Consensus 298 ~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~--~~~~~fV~vST 361 (851)
+ +.+.++ .++|++||+||.... .+.++..+++|+.|+..+.+++... ++--++|.+||
T Consensus 60 ~------~v~~~v~~~~~~~g~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS 133 (247)
T 3ged_A 60 L------TLKKFVEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIAS 133 (247)
T ss_dssp H------HHHHHHHHHHHHHSCCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred H------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEee
Confidence 6 555543 378999999986543 2467888999999999998887542 11258999999
Q ss_pred eeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHH----hCCCCEEEEec
Q psy11859 362 AFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY----KTKLPVVIVRP 437 (851)
Q Consensus 362 a~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~----~~~l~~~ivRp 437 (851)
..+.. +.|.. ..|+.||+.-+.+.+.. ++++.+..|-|
T Consensus 134 ~~~~~----------~~~~~----------------------------~~Y~asKaal~~ltk~lA~ela~~IrVN~I~P 175 (247)
T 3ged_A 134 TRAFQ----------SEPDS----------------------------EAYASAKGGIVALTHALAMSLGPDVLVNCIAP 175 (247)
T ss_dssp GGGTS----------CCTTC----------------------------HHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEE
T ss_pred ccccc----------CCCCC----------------------------HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 65432 11221 24999999887776654 34899999999
Q ss_pred ccccCCCC
Q psy11859 438 SIVLPSFQ 445 (851)
Q Consensus 438 ~~V~G~~~ 445 (851)
|.|--+..
T Consensus 176 G~i~t~~~ 183 (247)
T 3ged_A 176 GWINVTEQ 183 (247)
T ss_dssp CSBCCCC-
T ss_pred CcCCCCCc
Confidence 98865543
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.9e-11 Score=126.18 Aligned_cols=166 Identities=16% Similarity=0.151 Sum_probs=122.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||++=||+.+++.|++.| ..|++..|..... +.+.+ +.+ ...++.++.+|++
T Consensus 5 L~gKvalVTGas~GIG~aia~~la~~G---a~Vv~~~r~~~~~---~~~~~---------~~~----~~~~~~~~~~Dv~ 65 (258)
T 4gkb_A 5 LQDKVVIVTGGASGIGGAISMRLAEER---AIPVVFARHAPDG---AFLDA---------LAQ----RQPRATYLPVELQ 65 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCCCH---HHHHH---------HHH----HCTTCEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEECCcccH---HHHHH---------HHh----cCCCEEEEEeecC
Confidence 689999999999999999999999998 7899999976542 22221 111 1247889999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc------chhHHHHHHHHHHHHHHHHHHHHhc-C-CceEEEEee
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL------EAELKENVAANTRGTQRLLDIALKM-K-KLVAFIHFS 360 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~-~~~~fV~vS 360 (851)
+++ +...++ .++|++||+||.... .+.++..+++|+.|+..+.+++... . +--++|.+|
T Consensus 66 ~~~------~v~~~v~~~~~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnis 139 (258)
T 4gkb_A 66 DDA------QCRDAVAQTIATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNIS 139 (258)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 886 555443 379999999996432 2467788999999999998887532 0 125799999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~iv 435 (851)
|..+... .|.. ..|+.||+.-+.+.+..+ + ++.+..|
T Consensus 140 S~~~~~~----------~~~~----------------------------~~Y~asKaav~~ltr~lA~ela~~gIrVN~V 181 (258)
T 4gkb_A 140 SKTAVTG----------QGNT----------------------------SGYCASKGAQLALTREWAVALREHGVRVNAV 181 (258)
T ss_dssp CTHHHHC----------CSSC----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEE
T ss_pred ehhhccC----------CCCc----------------------------hHHHHHHHHHHHHHHHHHHHhcccCeEEEEE
Confidence 9654311 1111 249999998888776654 3 8999999
Q ss_pred ecccccCCC
Q psy11859 436 RPSIVLPSF 444 (851)
Q Consensus 436 Rp~~V~G~~ 444 (851)
-||.|--|.
T Consensus 182 ~PG~i~T~~ 190 (258)
T 4gkb_A 182 IPAEVMTPL 190 (258)
T ss_dssp EECSBCCSC
T ss_pred ecCCCCChh
Confidence 999987654
|
| >2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=4e-12 Score=112.82 Aligned_cols=80 Identities=16% Similarity=0.170 Sum_probs=70.6
Q ss_pred CccccChhhHHHHHhhhcCCCccccCccccCccc-cCchhHHHhhhhcCCCCCccCCCCCCccccccccCCcccccCccc
Q psy11859 728 LKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQF-SRSDELSRHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTF 806 (851)
Q Consensus 728 gk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F-~~~~~L~~H~r~H~gekp~~C~~Cgk~f~~~~~~~~H~~~C~k~f 806 (851)
..+|...+.|..|++.|++++||.|+ .|++.| .+...|..|+++| +++||.|++|||.|..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~C~--~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~--------------- 74 (96)
T 2ctd_A 13 PPVYAAGSLEEQWYLEIVDKGSVSCP--TCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRS--------------- 74 (96)
T ss_dssp CCSSCTTCHHHHHHHHHHHTSCEECT--TTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSS---------------
T ss_pred CCCCCCchHHHHHHHHhcCCCCcCCC--CCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCC---------------
Confidence 45788889999999999999999998 899999 9999999999999 9999999999997643
Q ss_pred ccccccCCCCCCccChHHHHHH-HHhhcCCcchhh
Q psy11859 807 KHRAEKTSTPGPSMCKRHLAKH-LKVHERQKYKMM 840 (851)
Q Consensus 807 ~~~~~~~~~~~pf~Ck~~L~~H-~r~Htgek~~~C 840 (851)
+..|+.| +++|+++.++.|
T Consensus 75 ---------------~~~L~~H~~~~H~~~p~~~~ 94 (96)
T 2ctd_A 75 ---------------LAGMKYHVMANHNSLPSGPS 94 (96)
T ss_dssp ---------------HHHHHHHHHHHTCCCSSCSC
T ss_pred ---------------HHHHHHHhHHhcCCCCCCCC
Confidence 4589999 999998665544
|
| >2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-13 Score=113.81 Aligned_cols=71 Identities=14% Similarity=0.226 Sum_probs=62.3
Q ss_pred hhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCC
Q psy11859 704 IMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783 (851)
Q Consensus 704 ~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~ 783 (851)
+..|..|+++|++++||.| +.|++.|.+.+.|.. ++||.|+ .|++.|.+...|.+|+++|++++||.|+
T Consensus 3 ~~~l~~H~~~h~~~~~~~C--~~C~k~f~~~~~l~~-------~~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~~~~C~ 71 (73)
T 2ctu_A 3 SGSSGKRQKIHLGDRSQKC--SKCGIIFIRRSTLSR-------RKTPMCE--KCRKDSCQEAALNKDEGNESGKKTSGPS 71 (73)
T ss_dssp CCSCCCCCCCCCCCSEEEC--SSSCCEEECCCCCCC-------SSSCCCH--HHHHTCSCCCSSCCCSSCCCCCCCSSCC
T ss_pred chhHHHHHHHhCCCCCeeC--CcccchhCCHHHhCc-------CCCCCCC--CCChhhcCHHHHHHHHHhhcCCCCCCCC
Confidence 4568889899999999999 789999988888765 7889997 8999999999999999999999999999
Q ss_pred CC
Q psy11859 784 LC 785 (851)
Q Consensus 784 ~C 785 (851)
.|
T Consensus 72 ~C 73 (73)
T 2ctu_A 72 SG 73 (73)
T ss_dssp CC
T ss_pred CC
Confidence 87
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.4e-11 Score=128.46 Aligned_cols=166 Identities=15% Similarity=0.197 Sum_probs=122.3
Q ss_pred hhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 213 ARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 213 ~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
.+-++||++|||||++=||+.+++.|++.| .+|++.+|... ++++.. + +...++..+.+
T Consensus 24 s~rL~gKvalVTGas~GIG~aiA~~la~~G---a~V~i~~r~~~------~l~~~~---------~---~~g~~~~~~~~ 82 (273)
T 4fgs_A 24 TQRLNAKIAVITGATSGIGLAAAKRFVAEG---ARVFITGRRKD------VLDAAI---------A---EIGGGAVGIQA 82 (273)
T ss_dssp -CTTTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH---------H---HHCTTCEEEEC
T ss_pred cchhCCCEEEEeCcCCHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHHH---------H---HcCCCeEEEEe
Confidence 344889999999999999999999999999 78999998642 222211 1 11246788999
Q ss_pred CCCCCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc-CCceEEE
Q psy11859 293 DILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM-KKLVAFI 357 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV 357 (851)
|++|++ +++.++ .++|++||.||.... .+.++..+++|+.|+..+.+++... .+-.++|
T Consensus 83 Dv~~~~------~v~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~II 156 (273)
T 4fgs_A 83 DSANLA------ELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVV 156 (273)
T ss_dssp CTTCHH------HHHHHHHHHHHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEE
T ss_pred cCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEE
Confidence 999986 555543 368999999997543 2567889999999999999988642 2234788
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~ 432 (851)
.+||..+.. +.|.. ..|+.||+.-..+.+..+ + ++.+
T Consensus 157 nisS~~~~~----------~~~~~----------------------------~~Y~asKaav~~ltr~lA~Ela~~gIrV 198 (273)
T 4fgs_A 157 LTGSTAGST----------GTPAF----------------------------SVYAASKAALRSFARNWILDLKDRGIRI 198 (273)
T ss_dssp EECCGGGGS----------CCTTC----------------------------HHHHHHHHHHHHHHHHHHHHTTTSCEEE
T ss_pred EEeehhhcc----------CCCCc----------------------------hHHHHHHHHHHHHHHHHHHHhcccCeEE
Confidence 998864422 11211 249999999888877654 3 8999
Q ss_pred EEEecccccCC
Q psy11859 433 VIVRPSIVLPS 443 (851)
Q Consensus 433 ~ivRp~~V~G~ 443 (851)
-.|-||.|--|
T Consensus 199 N~V~PG~i~T~ 209 (273)
T 4fgs_A 199 NTLSPGPTETT 209 (273)
T ss_dssp EEEEECSBCC-
T ss_pred EEEeeCCCCCh
Confidence 99999988655
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=7.2e-11 Score=124.48 Aligned_cols=157 Identities=18% Similarity=0.214 Sum_probs=116.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||++=||..+++.|++.| .+|++..|..... ..+...+.+|++
T Consensus 9 L~GK~alVTGas~GIG~aia~~la~~G---a~V~~~~r~~~~~-------------------------~~~~~~~~~Dv~ 60 (261)
T 4h15_A 9 LRGKRALITAGTKGAGAATVSLFLELG---AQVLTTARARPEG-------------------------LPEELFVEADLT 60 (261)
T ss_dssp CTTCEEEESCCSSHHHHHHHHHHHHTT---CEEEEEESSCCTT-------------------------SCTTTEEECCTT
T ss_pred CCCCEEEEeccCcHHHHHHHHHHHHcC---CEEEEEECCchhC-------------------------CCcEEEEEcCCC
Confidence 689999999999999999999999999 7899999975421 112336899999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCC-----c----chhHHHHHHHHHHHHHHHHHHHHhc---CCceEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLK-----L----EAELKENVAANTRGTQRLLDIALKM---KKLVAF 356 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~-----~----~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~f 356 (851)
+++ +...++ .++|++||+||... + .+.++..+++|+.|+..+.+++... .+--++
T Consensus 61 ~~~------~v~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~I 134 (261)
T 4h15_A 61 TKE------GCAIVAEATRQRLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVV 134 (261)
T ss_dssp SHH------HHHHHHHHHHHHTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceE
Confidence 886 555443 36899999998532 2 2457788999999999998877531 124689
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~ 431 (851)
|.+||..+.- +.|.. ...|+.||+.-+.+.+..+ + ++.
T Consensus 135 v~isS~~~~~----------~~~~~---------------------------~~~Y~asKaal~~lt~~lA~Ela~~gIr 177 (261)
T 4h15_A 135 VHVTSIQRVL----------PLPES---------------------------TTAYAAAKAALSTYSKAMSKEVSPKGVR 177 (261)
T ss_dssp EEECCGGGTS----------CCTTT---------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEEehhhcc----------CCCCc---------------------------cHHHHHHHHHHHHHHHHHHHHhhhhCeE
Confidence 9999964421 11211 1249999998887776554 3 899
Q ss_pred EEEEecccccCC
Q psy11859 432 VVIVRPSIVLPS 443 (851)
Q Consensus 432 ~~ivRp~~V~G~ 443 (851)
+..|-||.|--+
T Consensus 178 VN~V~PG~i~T~ 189 (261)
T 4h15_A 178 VVRVSPGWIETE 189 (261)
T ss_dssp EEEEEECCBCCH
T ss_pred EEEEeCCCcCCc
Confidence 999999988654
|
| >1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=4.8e-12 Score=105.62 Aligned_cols=66 Identities=30% Similarity=0.548 Sum_probs=55.3
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gek 778 (851)
.+.++|++++||+| +.|++.|.+...|..|+++|++++||.|. .|++.|.+...|.+|+++|+++.
T Consensus 4 ~~~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~h~~~~~~~C~--~C~~~f~~~~~L~~H~~~H~~~~ 69 (72)
T 1x6e_A 4 GSSGIHSGEKPYGC--VECGKAFSRSSILVQHQRVHTGEKPYKCL--ECGKAFSQNSGLINHQRIHTSGP 69 (72)
T ss_dssp CCCCTTTTCCCEEC--SSSCCEESSHHHHHHHHHGGGCSCCEECS--SSCCEESSHHHHHHHHHHHHSSS
T ss_pred CCCcccCCCCCccC--CCCCCccCCHHHHHHHHHhcCCCCCeECC--CCCcccCCHHHHHHHHHhcCCCC
Confidence 35678888888888 77888888888888888888888888887 78888888888888888887764
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.23 E-value=9.6e-11 Score=121.66 Aligned_cols=165 Identities=16% Similarity=0.130 Sum_probs=122.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||++=||+.+++.|++.| .+|++.+|.... +..+. +++ ...++..+.+|++
T Consensus 7 L~GKvalVTGas~GIG~aiA~~la~~G---a~Vvi~~r~~~~----~~~~~---------~~~----~g~~~~~~~~Dv~ 66 (247)
T 4hp8_A 7 LEGRKALVTGANTGLGQAIAVGLAAAG---AEVVCAARRAPD----ETLDI---------IAK----DGGNASALLIDFA 66 (247)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSCCH----HHHHH---------HHH----TTCCEEEEECCTT
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHcC---CEEEEEeCCcHH----HHHHH---------HHH----hCCcEEEEEccCC
Confidence 689999999999999999999999999 789999986431 11111 111 2247889999999
Q ss_pred CCcCCCCHHHHHHHhc--CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh-c---CCceEEEEeeee
Q psy11859 296 QANLGIKDSDLLMLQE--EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK-M---KKLVAFIHFSTA 362 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~--~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~-~---~~~~~fV~vSTa 362 (851)
|+. +...+++ ++|+++|+||.... .+.|+..+++|+.|+..+.+++.. + ++--++|.+||.
T Consensus 67 d~~------~v~~~~~~g~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~ 140 (247)
T 4hp8_A 67 DPL------AAKDSFTDAGFDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASL 140 (247)
T ss_dssp STT------TTTTSSTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred CHH------HHHHHHHhCCCCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEech
Confidence 986 4444443 69999999997543 246788999999999999887643 2 223689999996
Q ss_pred eeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEEEEec
Q psy11859 363 FCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVVIVRP 437 (851)
Q Consensus 363 ~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ivRp 437 (851)
.+.. ..|.. ..|+.||+.-..+.+..+ + ++.+-.|-|
T Consensus 141 ~~~~----------g~~~~----------------------------~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~P 182 (247)
T 4hp8_A 141 LSFQ----------GGIRV----------------------------PSYTAAKHGVAGLTKLLANEWAAKGINVNAIAP 182 (247)
T ss_dssp GGTS----------CCSSC----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred hhCC----------CCCCC----------------------------hHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEee
Confidence 5432 11211 239999998887776553 3 899999999
Q ss_pred ccccCCC
Q psy11859 438 SIVLPSF 444 (851)
Q Consensus 438 ~~V~G~~ 444 (851)
|.|--|.
T Consensus 183 G~i~T~~ 189 (247)
T 4hp8_A 183 GYIETNN 189 (247)
T ss_dssp CSBCSGG
T ss_pred CCCCCcc
Confidence 9987654
|
| >2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.8e-12 Score=115.45 Aligned_cols=79 Identities=10% Similarity=0.013 Sum_probs=73.5
Q ss_pred cCCCCCCCCCceeeeeccceeecCCccccc-hhhhhhhcccccCC-cccccccCCccCccccChhhHHHHHhhhcCCCcc
Q psy11859 673 WYPNGQIRSNRFWHYFFVIFTQILPAYLVD-FIMVLIRQKTFENL-VRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSF 750 (851)
Q Consensus 673 ~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~-~~~~l~~h~~~h~~-~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~ 750 (851)
..+.+.+..|+..|.+.++|.|..|++.|. ....|..|+++|++ ++||+| +.|++.|.+...|..|+++|++++|.
T Consensus 6 ~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C--~~C~k~F~~~~~L~~H~~~h~~~kp~ 83 (98)
T 2gqj_A 6 SGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKC--QHCRKQFKSKAGLNYHTMAEHSAKPS 83 (98)
T ss_dssp CCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSC--SSSCCCCSCHHHHHHHHHHHSCSCSS
T ss_pred CCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEEC--CCCCCccCCHHHHHHHHHHHcCCCCC
Confidence 445678899999999999999999999999 99999999999999 999999 88999999999999999999999987
Q ss_pred ccC
Q psy11859 751 KCD 753 (851)
Q Consensus 751 ~C~ 753 (851)
...
T Consensus 84 ~~~ 86 (98)
T 2gqj_A 84 DAE 86 (98)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
|
| >2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.3e-12 Score=107.18 Aligned_cols=64 Identities=20% Similarity=0.241 Sum_probs=60.9
Q ss_pred eeeeccceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCcc
Q psy11859 685 WHYFFVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSF 750 (851)
Q Consensus 685 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~ 750 (851)
.+.+.++|.|..|++.|.....|..|+++|++++||+| +.|++.|.+...|..|+++|++++||
T Consensus 11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~kp~ 74 (74)
T 2lce_A 11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRC--NICGAQFNRPANLKTHTRIHSGEKPY 74 (74)
T ss_dssp CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEEC--TTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEEC--CCCCchhCCHHHHHHHHHhcCCCCCC
Confidence 45678899999999999999999999999999999999 89999999999999999999999986
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-10 Score=124.25 Aligned_cols=225 Identities=9% Similarity=0.010 Sum_probs=129.1
Q ss_pred cCCCEEEEecCc--cHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhC-cccCCCeEEEEc
Q psy11859 216 YAGRSVLVTGGT--GFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC-PAQLSRLHIIEG 292 (851)
Q Consensus 216 ~~~k~VlVTGat--GFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~-~~~~~~v~~v~g 292 (851)
++||+||||||+ |+||+++++.|++.| .+|++++|.... .+..+-.+....+.+.+.. .........+.+
T Consensus 6 l~~k~~lVTGas~~~GIG~aia~~la~~G---~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (297)
T 1d7o_A 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAG---AEILVGTWVPAL----NIFETSLRRGKFDQSRVLPDGSLMEIKKVYPL 78 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHTT---CEEEEEEEHHHH----HHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEE
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCC---CeEEEeeccccc----hhhhhhhhhhHhhhhhhhcccccccccccccc
Confidence 578999999999 999999999999998 688888764200 0000000000000110000 000011233344
Q ss_pred CC--------C----C--------CcCCCCHHHHHHH-------hcCccEEEEccccCC-----c----chhHHHHHHHH
Q psy11859 293 DI--------L----Q--------ANLGIKDSDLLML-------QEEVSVVFNGAASLK-----L----EAELKENVAAN 336 (851)
Q Consensus 293 Di--------~----~--------~~lgls~~~~~~~-------~~~vd~ViH~AA~~~-----~----~~~~~~~~~~N 336 (851)
|+ + + ++ ++..+ ..++|+|||+||... + .+.++..+++|
T Consensus 79 ~~~~~~~~dv~~Dv~~~~~~~~~~~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN 152 (297)
T 1d7o_A 79 DAVFDNPEDVPEDVKANKRYAGSSNW------TVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISAS 152 (297)
T ss_dssp CTTCCSGGGSCHHHHTSHHHHHCCCC------SHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHH
T ss_pred ceeccchhhhhhhhhccccccccCHH------HHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHh
Confidence 32 2 1 22 22222 237999999998532 2 23567889999
Q ss_pred HHHHHHHHHHHHhc-CCceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHH
Q psy11859 337 TRGTQRLLDIALKM-KKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFT 415 (851)
Q Consensus 337 v~Gt~~ll~~a~~~-~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~S 415 (851)
+.|+.++++++... ..-.++|++||..+... .|.. ...|+.|
T Consensus 153 ~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~----------~~~~---------------------------~~~Y~as 195 (297)
T 1d7o_A 153 SYSFVSLLSHFLPIMNPGGASISLTYIASERI----------IPGY---------------------------GGGMSSA 195 (297)
T ss_dssp THHHHHHHHHHGGGEEEEEEEEEEECGGGTSC----------CTTC---------------------------TTTHHHH
T ss_pred hhHHHHHHHHHHHHhccCceEEEEeccccccC----------CCCc---------------------------chHHHHH
Confidence 99999999999753 11258999999654321 1110 0249999
Q ss_pred HHHHHHHHHHH----h--CCCCEEEEecccccCCCCCCc---hhHhhhhcCCceE-EEEcccCceeEEEeecC----CCC
Q psy11859 416 KRLTETLVDEY----K--TKLPVVIVRPSIVLPSFQEPV---PGWVDSLNGPVGV-LVASGKGVVRSMILNDL----STE 481 (851)
Q Consensus 416 K~~aE~~v~~~----~--~~l~~~ivRp~~V~G~~~~p~---p~~i~~~~~~~~~-~~~~g~~v~~~~~~~~~----~~~ 481 (851)
|+..+.+.+.+ . .++.+.+|+||.|.++..... +.+.+.+....+. -.+...++++.+..... ...
T Consensus 196 Kaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~l~s~~~~~it 275 (297)
T 1d7o_A 196 KAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKAIGFIDTMIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASAIT 275 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCCSSCCSHHHHHHHHHHHHSSSCCCBCHHHHHHHHHHHTSGGGTTCC
T ss_pred HHHHHHHHHHHHHHhCcccCcEEEEEeccccccchhhhccccHHHHHHhhccCCCCCCCCHHHHHHHHHHHhCccccCCC
Confidence 99998887654 2 389999999999998865432 2332222111110 11223444444332211 235
Q ss_pred ccEEEEeCC
Q psy11859 482 TQVFNISSN 490 (851)
Q Consensus 482 ~~iyni~~~ 490 (851)
|.++++++|
T Consensus 276 G~~i~vdgG 284 (297)
T 1d7o_A 276 GATIYVDNG 284 (297)
T ss_dssp SCEEEESTT
T ss_pred CCEEEECCC
Confidence 778888877
|
| >2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=4.3e-12 Score=113.53 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=61.6
Q ss_pred eeccceeecCCccccchhhhhhhccc-cc---CCcccccccCCccCccccChhhHHHH-HhhhcCCCccccC
Q psy11859 687 YFFVIFTQILPAYLVDFIMVLIRQKT-FE---NLVRTFQCTYPECLKFYAKMSHLKAH-LRRHSGERSFKCD 753 (851)
Q Consensus 687 ~~~~~~~c~~c~~~~~~~~~l~~h~~-~h---~~~r~~~C~~~~Cgk~F~~~~~L~~H-~~~H~gekp~~C~ 753 (851)
++++||.|..|++.|..+..|..|++ +| ++++||.| +.||++|...+.|..| +++|++++||.|.
T Consensus 14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C--~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~ 83 (102)
T 2ghf_A 14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVC--VECNFLTKRYDALSEHNLKYHPGEENFKLT 83 (102)
T ss_dssp CCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEE--TTTTEEESSTHHHHTHHHHTSTTCCCEEEE
T ss_pred CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCC--CCCCcccCCHHHHHHHHHHhcCCCCCeeCC
Confidence 67899999999999999999999997 69 67899999 8999999999999999 8999999999997
|
| >1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=9.3e-12 Score=103.20 Aligned_cols=64 Identities=25% Similarity=0.449 Sum_probs=48.7
Q ss_pred ccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCc
Q psy11859 713 FENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPY 780 (851)
Q Consensus 713 ~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~ 780 (851)
.|++++||+| +.|++.|.....|..|+++|++++||.|. .|++.|.+...|.+|+++|++++|.
T Consensus 3 s~~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~p~ 66 (70)
T 1x5w_A 3 SGSSGHPEKC--SECSYSCSSKAALRIHERIHCTDRPFKCN--YCSFDTKQPSNLSKHMKKFHGDMSG 66 (70)
T ss_dssp SCCCCCSEEC--SSSSCEESSHHHHHHHHGGGCCSCSEECS--SSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCCeEC--CCCCcccCCHHHHHHHHHHcCCCCCEeCC--CCCCccCCHHHHHHHHHHHhCCCCC
Confidence 4677777777 67777777777777777777777777776 7777777777777777777777664
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.19 E-value=6e-11 Score=140.44 Aligned_cols=169 Identities=18% Similarity=0.114 Sum_probs=108.2
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCC---HHHHHHHHhcChhhHHHhhhCcccCCCeEEE
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLT---PKARLAEFSKLPVFERLRKECPAQLSRLHII 290 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~---~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v 290 (851)
.-++||+||||||+|.||+++++.|++.| .+|++++|...... ..+.+.+ ..+.++.. ... +
T Consensus 15 ~~l~gk~~lVTGas~GIG~aiA~~La~~G---a~Vv~~~r~~~~~~~~~~~~~~~~-----~~~~i~~~----~~~---~ 79 (613)
T 3oml_A 15 LRYDGRVAVVTGAGAGLGREYALLFAERG---AKVVVNDLGGTHSGDGASQRAADI-----VVDEIRKA----GGE---A 79 (613)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEC--------------CHHH-----HHHHHHHT----TCC---E
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCcccccccCCHHHHHH-----HHHHHHHh----CCe---E
Confidence 34789999999999999999999999998 78998887321100 0011111 11112111 112 2
Q ss_pred EcCCCCCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHH----hcCC
Q psy11859 291 EGDILQANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIAL----KMKK 352 (851)
Q Consensus 291 ~gDi~~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~----~~~~ 352 (851)
.+|+++.. +...+++ ++|+|||+||.... .+.++..+++|+.|+.++++++. +. +
T Consensus 80 ~~D~~d~~------~~~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~-~ 152 (613)
T 3oml_A 80 VADYNSVI------DGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQ-N 152 (613)
T ss_dssp EECCCCGG------GHHHHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-T
T ss_pred EEEeCCHH------HHHHHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 47888775 5555544 68999999997643 24577889999999999999984 33 3
Q ss_pred ceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----
Q psy11859 353 LVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT---- 428 (851)
Q Consensus 353 ~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~---- 428 (851)
-.++|++||..+... .+. ...|+.||+..+.+.+.++.
T Consensus 153 ~g~IV~isS~a~~~~----------~~~----------------------------~~~Y~asKaal~~lt~~la~e~~~ 194 (613)
T 3oml_A 153 YGRIIMTSSNSGIYG----------NFG----------------------------QVNYTAAKMGLIGLANTVAIEGAR 194 (613)
T ss_dssp CEEEEEECCHHHHHC----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CCEEEEECCHHHcCC----------CCC----------------------------ChHHHHHHHHHHHHHHHHHHHhCc
Confidence 579999999644211 111 12499999999988876543
Q ss_pred -CCCEEEEecccccC
Q psy11859 429 -KLPVVIVRPSIVLP 442 (851)
Q Consensus 429 -~l~~~ivRp~~V~G 442 (851)
++.+..|.|+.+..
T Consensus 195 ~gI~vn~v~Pg~~t~ 209 (613)
T 3oml_A 195 NNVLCNVIVPTAASR 209 (613)
T ss_dssp GTEEEEEEEEC----
T ss_pred cCeEEEEEECCCCCh
Confidence 89999999997643
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.3e-10 Score=120.55 Aligned_cols=169 Identities=11% Similarity=0.052 Sum_probs=120.4
Q ss_pred cCCCEEEEecCcc--HHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 216 YAGRSVLVTGGTG--FMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 216 ~~~k~VlVTGatG--FIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
++||+++||||+| =||..+++.|++.| .+|.+..|.... .+.+.+... +. ...++.++.+|
T Consensus 4 l~gK~alVTGaa~~~GIG~aiA~~la~~G---a~Vvi~~r~~~~---~~~~~~~~~--------~~---~~~~~~~~~~D 66 (256)
T 4fs3_A 4 LENKTYVIMGIANKRSIAFGVAKVLDQLG---AKLVFTYRKERS---RKELEKLLE--------QL---NQPEAHLYQID 66 (256)
T ss_dssp CTTCEEEEECCCSTTCHHHHHHHHHHHTT---CEEEEEESSGGG---HHHHHHHHG--------GG---TCSSCEEEECC
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHHHH--------hc---CCCcEEEEEcc
Confidence 5899999999987 69999999999999 789999997543 222222111 11 12378899999
Q ss_pred CCCCcCCCCHHHHHHHh-------cCccEEEEccccCCcc-----------hhHHHHHHHHHHHHHHHHHHHHhc-CCce
Q psy11859 294 ILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKLE-----------AELKENVAANTRGTQRLLDIALKM-KKLV 354 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~~-----------~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~ 354 (851)
+++++ +...++ .++|++||+||..... +.+...+++|+.++..+..++... ++--
T Consensus 67 v~~~~------~v~~~~~~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G 140 (256)
T 4fs3_A 67 VQSDE------EVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGG 140 (256)
T ss_dssp TTCHH------HHHHHHHHHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCE
T ss_pred CCCHH------HHHHHHHHHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99876 555443 3799999999965321 234566889999999888887643 2235
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~ 429 (851)
++|.+||..+.. +.|.. ..|+.||+.-+.+.+..+ + +
T Consensus 141 ~IVnisS~~~~~----------~~~~~----------------------------~~Y~asKaal~~ltr~lA~Ela~~g 182 (256)
T 4fs3_A 141 SIVATTYLGGEF----------AVQNY----------------------------NVMGVAKASLEANVKYLALDLGPDN 182 (256)
T ss_dssp EEEEEECGGGTS----------CCTTT----------------------------HHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred EEEEEecccccc----------Ccccc----------------------------hhhHHHHHHHHHHHHHHHHHhCccC
Confidence 799999965421 11211 349999998887776553 3 8
Q ss_pred CCEEEEecccccCCCC
Q psy11859 430 LPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 430 l~~~ivRp~~V~G~~~ 445 (851)
+.+..|-||.|--+..
T Consensus 183 IrVN~V~PG~i~T~~~ 198 (256)
T 4fs3_A 183 IRVNAISAGPIRTLSA 198 (256)
T ss_dssp EEEEEEEECCCCSGGG
T ss_pred eEEEEEecCCCCChhh
Confidence 9999999998876543
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.9e-11 Score=148.98 Aligned_cols=168 Identities=17% Similarity=0.136 Sum_probs=117.2
Q ss_pred cCCCEEEEecCccH-HHHHHHHHHHHhCCCccEEEEE-ecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 216 YAGRSVLVTGGTGF-MGKVLLEKLLRSCPDIGKVYIL-CRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 216 ~~~k~VlVTGatGF-IG~~Lv~~Ll~~g~~v~~V~~l-~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
++||+||||||+|. ||.++++.|++.| .+|+++ .|...... + ..+.+.++.+....++.++.+|
T Consensus 474 L~GKvALVTGASgGGIGrAIAr~LA~~G---A~VVL~~~R~~e~le--e---------~a~eL~ael~a~Ga~V~vV~~D 539 (1688)
T 2pff_A 474 FKDKYVLITGAGKGSIGAEVLQGLLQGG---AKVVVTTSRFSKQVT--D---------YYQSIYAKYGAKGSTLIVVPFN 539 (1688)
T ss_dssp CCSCCEEECSCSSSSTHHHHHHHHHHHT---CEEEEEESSCSTTTT--T---------HHHHTTTTTCCTTCEEEEEECC
T ss_pred cCCCEEEEECCChHHHHHHHHHHHHHCc---CEEEEEeCCCHHHHH--H---------HHHHHHHHhhcCCCeEEEEEeC
Confidence 57899999999998 9999999999998 678887 45443221 1 1112222222223478899999
Q ss_pred CCCCcCCCCHHHHHHHhc-------------CccEEEEccccCCc----------chhHHHHHHHHHHHHHHHHHHHHhc
Q psy11859 294 ILQANLGIKDSDLLMLQE-------------EVSVVFNGAASLKL----------EAELKENVAANTRGTQRLLDIALKM 350 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~-------------~vd~ViH~AA~~~~----------~~~~~~~~~~Nv~Gt~~ll~~a~~~ 350 (851)
+++++ ++..+++ .+|+|||+||.... .+.+...+++|+.|+.+++++++..
T Consensus 540 VTD~e------sVeaLVe~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~l 613 (1688)
T 2pff_A 540 QGSKQ------DVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSA 613 (1688)
T ss_dssp SSSTT------HHHHHHHHHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CCCHH------HHHHHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99987 6555432 58999999996532 2345678999999999999988433
Q ss_pred CC-----ceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHH
Q psy11859 351 KK-----LVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDE 425 (851)
Q Consensus 351 ~~-----~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~ 425 (851)
+. -.++|++||..+... . ...|+.||+..+.++..
T Consensus 614 p~M~krggGrIVnISSiAG~~G-----------g-----------------------------~saYaASKAAL~aLttr 653 (1688)
T 2pff_A 614 RGIETRPAQVILPMSPNHGTFG-----------G-----------------------------DGMYSESKLSLETLFNR 653 (1688)
T ss_dssp HTCTTSCEEECCCCCSCTTTSS-----------C-----------------------------BTTHHHHHHHHTHHHHH
T ss_pred hHHHhCCCCEEEEEEChHhccC-----------C-----------------------------chHHHHHHHHHHHHHHH
Confidence 21 258999999643211 1 13499999999998433
Q ss_pred -HhC----CCCEEEEecccccCC
Q psy11859 426 -YKT----KLPVVIVRPSIVLPS 443 (851)
Q Consensus 426 -~~~----~l~~~ivRp~~V~G~ 443 (851)
.+. .+.+..|.||.|-|+
T Consensus 654 sLAeEla~~IRVNaVaPG~V~TT 676 (1688)
T 2pff_A 654 WHSESWANQLTVCGAIIGWTRGT 676 (1688)
T ss_dssp TTTSSCTTTEECCCCCCCCCCCC
T ss_pred HHHHHcCCCeEEEEEEECcCcCC
Confidence 332 367788899988753
|
| >2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-12 Score=122.11 Aligned_cols=84 Identities=24% Similarity=0.337 Sum_probs=74.3
Q ss_pred eeccceeecCCccccc------hhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCcc
Q psy11859 687 YFFVIFTQILPAYLVD------FIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQ 760 (851)
Q Consensus 687 ~~~~~~~c~~c~~~~~------~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~ 760 (851)
...+.+.|+.|.+.|. ....|..|+ .|++++||+| +.||+.|.....|..|+++| ++||.|+ .|++.
T Consensus 37 ~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C--~~C~k~f~~~~~l~~H~~~H--~~~~~C~--~C~k~ 109 (129)
T 2wbt_A 37 PEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVC--PLCLMPFSSSVSLKQHIRYT--EHTKVCP--VCKKE 109 (129)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEEC--TTTCCEESSHHHHHHHHHHT--CCCCBCT--TTCCB
T ss_pred hhhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeEC--CCCCcccCCHhHHHHHHHHC--CCCCCCC--CCCcc
Confidence 3456778998888776 456677776 6999999999 89999999999999999999 8999998 89999
Q ss_pred ccCchhHHHhhhhcCCC
Q psy11859 761 FSRSDELSRHRRSHFGI 777 (851)
Q Consensus 761 F~~~~~L~~H~r~H~ge 777 (851)
|.+...|.+|+++|+|.
T Consensus 110 f~~~~~l~~H~~~h~~~ 126 (129)
T 2wbt_A 110 FTSTDSALDHVCKKHNI 126 (129)
T ss_dssp CSSHHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHHCCc
Confidence 99999999999999985
|
| >2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-11 Score=104.08 Aligned_cols=70 Identities=19% Similarity=0.389 Sum_probs=53.6
Q ss_pred hhhhcccccCCcccccccCCccCccccChhhHHHHHh-hhcCC-CccccCccccCccccCchhHHHhhhhcC-CCCC
Q psy11859 706 VLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLR-RHSGE-RSFKCDWQDCKWQFSRSDELSRHRRSHF-GIKP 779 (851)
Q Consensus 706 ~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~-~H~ge-kp~~C~~~~C~k~F~~~~~L~~H~r~H~-gekp 779 (851)
.|.+|+++|++++||+| +.|++.|.+...|..|++ .|+++ +||.|+ .|++.|.+...|.+|++.|+ ++.|
T Consensus 2 s~~~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~--~C~~~f~~~~~L~~H~~~~H~~~~p 74 (77)
T 2ct1_A 2 SSGSSGRTHSGEKPYEC--YICHARFTQSGTMKMHILQKHTENVAKFHCP--HCDTVIARKSDLGVHLRKQHSYSGP 74 (77)
T ss_dssp CCCCCCCCCSCCCSEEC--TTTCCEESCHHHHHHHHHHHSSSSCSSEECS--SSSCEESSHHHHHHHHHHTSCCSCC
T ss_pred CCCccccccCCCCCeEC--CCcCchhCCHHHHHHHHHHhcCCCCCccCCC--CCCCccCCHHHHHHHHHHhCCCCCC
Confidence 35678888888888888 778888888888888876 67664 788887 78888888888888887644 3444
|
| >1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-11 Score=103.11 Aligned_cols=67 Identities=18% Similarity=0.186 Sum_probs=62.6
Q ss_pred CCceeeeeccceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCc
Q psy11859 681 SNRFWHYFFVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERS 749 (851)
Q Consensus 681 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp 749 (851)
.+...|++.+||.|..|++.|.....|..|+++|++++||+| +.|++.|.+...|..|+++|+++.+
T Consensus 4 ~~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C--~~C~~~f~~~~~L~~H~~~H~~~~~ 70 (72)
T 1x6e_A 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKC--LECGKAFSQNSGLINHQRIHTSGPS 70 (72)
T ss_dssp CCCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEEC--SSSCCEESSHHHHHHHHHHHHSSSS
T ss_pred CCCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeEC--CCCCcccCCHHHHHHHHHhcCCCCC
Confidence 456788999999999999999999999999999999999999 8899999999999999999998753
|
| >1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-11 Score=101.86 Aligned_cols=65 Identities=17% Similarity=0.054 Sum_probs=61.4
Q ss_pred eeeeccceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccc
Q psy11859 685 WHYFFVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFK 751 (851)
Q Consensus 685 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~ 751 (851)
.|++.++|.|..|++.|.....|..|+++|++++||+| +.|++.|.+...|..|+++|++++|..
T Consensus 3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C--~~C~~~f~~~~~L~~H~~~h~~~~p~p 67 (70)
T 1x5w_A 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKC--NYCSFDTKQPSNLSKHMKKFHGDMSGP 67 (70)
T ss_dssp SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEEC--SSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeC--CCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence 36788999999999999999999999999999999999 889999999999999999999998754
|
| >2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.5e-11 Score=102.59 Aligned_cols=71 Identities=18% Similarity=0.122 Sum_probs=64.0
Q ss_pred CCCCCCceeeeeccceeecCCccccchhhhhhhccc-ccCCc-ccccccCCccCccccChhhHHHHHhhhc-CCCc
Q psy11859 677 GQIRSNRFWHYFFVIFTQILPAYLVDFIMVLIRQKT-FENLV-RTFQCTYPECLKFYAKMSHLKAHLRRHS-GERS 749 (851)
Q Consensus 677 ~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~-~h~~~-r~~~C~~~~Cgk~F~~~~~L~~H~~~H~-gekp 749 (851)
+++.+|++.|++.+||.|..|++.|.....|..|++ .|+++ +||+| +.|++.|.+...|..|++.|. .+.|
T Consensus 1 Gs~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C--~~C~~~f~~~~~L~~H~~~~H~~~~p 74 (77)
T 2ct1_A 1 GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHC--PHCDTVIARKSDLGVHLRKQHSYSGP 74 (77)
T ss_dssp CCCCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEEC--SSSSCEESSHHHHHHHHHHTSCCSCC
T ss_pred CCCCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCC--CCCCCccCCHHHHHHHHHHhCCCCCC
Confidence 468899999999999999999999999999999986 78875 89999 889999999999999999754 4444
|
| >2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.7e-11 Score=104.53 Aligned_cols=64 Identities=25% Similarity=0.416 Sum_probs=44.4
Q ss_pred ccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhh-hhcCCCC
Q psy11859 711 KTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHR-RSHFGIK 778 (851)
Q Consensus 711 ~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~-r~H~gek 778 (851)
+..+...++|.| ++||+.|.+...|..|+++|++++||.|. .|++.|.++..|.+|+ +.|++|.
T Consensus 20 ~~~~~~~~~h~C--~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~--~C~k~F~~~~~L~~H~~~~H~~E~ 84 (85)
T 2lv2_A 20 LGLSASAECHLC--PVCGESFASKGAQERHLRLLHAAQVFPCK--YCPATFYSSPGLTRHINKCHPSEN 84 (85)
T ss_dssp CSSCCCCTTEEC--TTSCCEESSHHHHHHHHHTTSCSSSEECT--TSSCEESSHHHHHHHHHTTCTTCC
T ss_pred CCCCCCCCCEEC--CCCCCCcCcHHHHhhhhhhccCCCccCCC--CCCCEeCCHHHHHHhCcccCcCCC
Confidence 345666677777 66777777777777777777777777776 6777777777777774 4566653
|
| >2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.3e-11 Score=103.22 Aligned_cols=68 Identities=12% Similarity=0.002 Sum_probs=60.5
Q ss_pred CCCCceeeeeccceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHH-hhhcCCC
Q psy11859 679 IRSNRFWHYFFVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHL-RRHSGER 748 (851)
Q Consensus 679 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~-~~H~gek 748 (851)
.......|...++|.|++|++.|..+..|..|+++|++++||+| +.|+++|.+...|..|+ +.|++|.
T Consensus 16 ~~~~~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~~H~~E~ 84 (85)
T 2lv2_A 16 GAGVLGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPC--KYCPATFYSSPGLTRHINKCHPSEN 84 (85)
T ss_dssp CCSCCSSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEEC--TTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred CCCCCCCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCC--CCCCCEeCCHHHHHHhCcccCcCCC
Confidence 33445667788899999999999999999999999999999999 88999999999999996 5798764
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=7e-10 Score=120.49 Aligned_cols=184 Identities=10% Similarity=0.021 Sum_probs=109.6
Q ss_pred cCCCEEEEecC--ccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhC-cccCCCeEEEEc
Q psy11859 216 YAGRSVLVTGG--TGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC-PAQLSRLHIIEG 292 (851)
Q Consensus 216 ~~~k~VlVTGa--tGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~-~~~~~~v~~v~g 292 (851)
++||+|||||| +|.||+++++.|++.| .+|++++|... ..+..+-.+....+.+.+.. ......+.++.+
T Consensus 7 l~gk~~lVTGa~~s~GIG~aia~~la~~G---~~Vv~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (315)
T 2o2s_A 7 LRGQTAFVAGVADSHGYGWAIAKHLASAG---ARVALGTWPPV----LGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPL 79 (315)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHTTT---CEEEEEECHHH----HHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEEC
T ss_pred CCCCEEEEeCCCCCCChHHHHHHHHHHCC---CEEEEEecccc----cchhhhhhhhhhhhhhhhhhccccccccccccc
Confidence 57899999999 8999999999999998 68888887421 00000000000001111100 000001234444
Q ss_pred CCC--CCc-CC--C---------CHHHHHHHh-------cCccEEEEccccCC-----c----chhHHHHHHHHHHHHHH
Q psy11859 293 DIL--QAN-LG--I---------KDSDLLMLQ-------EEVSVVFNGAASLK-----L----EAELKENVAANTRGTQR 342 (851)
Q Consensus 293 Di~--~~~-lg--l---------s~~~~~~~~-------~~vd~ViH~AA~~~-----~----~~~~~~~~~~Nv~Gt~~ 342 (851)
|+. ++. +. + +.+++..++ .++|++||+||... + .+.++..+++|+.|+.+
T Consensus 80 d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~ 159 (315)
T 2o2s_A 80 DAAFDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVS 159 (315)
T ss_dssp CTTCSSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred cccccccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHH
Confidence 432 111 00 0 001233222 37999999998542 2 23567889999999999
Q ss_pred HHHHHHhc-CCceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHH
Q psy11859 343 LLDIALKM-KKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTET 421 (851)
Q Consensus 343 ll~~a~~~-~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~ 421 (851)
+++++... ..-.++|++||..+... .|. +...|+.||+..+.
T Consensus 160 l~~~~~~~m~~~g~Iv~isS~~~~~~----------~~~---------------------------~~~~Y~asKaal~~ 202 (315)
T 2o2s_A 160 LLQHFGPIMNEGGSAVTLSYLAAERV----------VPG---------------------------YGGGMSSAKAALES 202 (315)
T ss_dssp HHHHHSTTEEEEEEEEEEEEGGGTSC----------CTT---------------------------CCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEeccccccc----------CCC---------------------------ccHHHHHHHHHHHH
Confidence 99998643 11158999999654321 111 01249999998887
Q ss_pred HHHHH----h--CCCCEEEEecccccCC
Q psy11859 422 LVDEY----K--TKLPVVIVRPSIVLPS 443 (851)
Q Consensus 422 ~v~~~----~--~~l~~~ivRp~~V~G~ 443 (851)
+.+.+ . .++.+..|+||.|-.+
T Consensus 203 l~~~la~el~~~~gIrvn~v~PG~v~T~ 230 (315)
T 2o2s_A 203 DTRTLAWEAGQKYGVRVNAISAGPLKSR 230 (315)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEECCCCCH
T ss_pred HHHHHHHHhCcccCeEEEEEecccccch
Confidence 77543 3 3899999999998654
|
| >1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=4.8e-11 Score=99.59 Aligned_cols=68 Identities=29% Similarity=0.621 Sum_probs=57.5
Q ss_pred hhhhc-ccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcC
Q psy11859 706 VLIRQ-KTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHF 775 (851)
Q Consensus 706 ~l~~h-~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~ 775 (851)
.+..| ..+|++++||.|.++.|++.|.....|..|+++|++++||.|. .|++.|.+...|.+|+++|+
T Consensus 5 ~~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~Ht 73 (73)
T 1f2i_G 5 PMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCR--ICMRNFSRSDHLTTHIRTHT 73 (73)
T ss_dssp ---CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECT--TTCCEESCHHHHHHHHTTCC
T ss_pred CccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECC--CCCchhCCHHHHHHHHHhcC
Confidence 34455 5688999999994336999999999999999999999999998 89999999999999999885
|
| >2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=3.3e-11 Score=98.44 Aligned_cols=61 Identities=21% Similarity=0.476 Sum_probs=44.8
Q ss_pred cccCCcccccccCCccCccccChhhHHHHHhh-h-cCCCccccCccccCccccCchhHHHhhhhcCC
Q psy11859 712 TFENLVRTFQCTYPECLKFYAKMSHLKAHLRR-H-SGERSFKCDWQDCKWQFSRSDELSRHRRSHFG 776 (851)
Q Consensus 712 ~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~-H-~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~g 776 (851)
++|++++||.| +.|++.|.+...|..|++. | ++++||.|+ .|++.|.+...|.+|++.|++
T Consensus 3 ~~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~--~C~k~f~~~~~L~~H~~~~H~ 65 (66)
T 2drp_A 3 FTKEGEHTYRC--KVCSRVYTHISNFCRHYVTSHKRNVKVYPCP--FCFKEFTRKDNMTAHVKIIHK 65 (66)
T ss_dssp CEEEETTEEEC--TTTCCEESSHHHHHHHHHHHSSSSCCCEECT--TTCCEESCHHHHHHHHHHHTC
T ss_pred cccCCCcceEC--CCCcchhCCHHHHHHHHHHHcCCCCcCeECC--CCCCccCCHHHHHHHHHHHcC
Confidence 56777777777 6777777777777777776 6 467777776 677777777777777777664
|
| >2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=4e-12 Score=105.94 Aligned_cols=71 Identities=15% Similarity=0.031 Sum_probs=66.7
Q ss_pred CCCCCCCceeeeeccceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCcc
Q psy11859 676 NGQIRSNRFWHYFFVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQ 755 (851)
Q Consensus 676 ~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~ 755 (851)
.+.|..|++.|.+.+||.|+.|++.|.....|.. ++||.| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 3 ~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C--~~C~~~f~~~~~l~~H~~~H~~~~~~~C~-- 71 (73)
T 2ctu_A 3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMC--EKCRKDSCQEAALNKDEGNESGKKTSGPS-- 71 (73)
T ss_dssp CCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCC--HHHHHTCSCCCSSCCCSSCCCCCCCSSCC--
T ss_pred chhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCC--CCCChhhcCHHHHHHHHHhhcCCCCCCCC--
Confidence 4679999999999999999999999999988887 789999 89999999999999999999999999997
Q ss_pred cc
Q psy11859 756 DC 757 (851)
Q Consensus 756 ~C 757 (851)
.|
T Consensus 72 ~C 73 (73)
T 2ctu_A 72 SG 73 (73)
T ss_dssp CC
T ss_pred CC
Confidence 66
|
| >2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=8.3e-11 Score=99.60 Aligned_cols=68 Identities=25% Similarity=0.394 Sum_probs=57.4
Q ss_pred ccCCcccccccCCccCccccChhhHHHHHhhhcC---CCccccCccccCccccCchhHHHhh-hhcCCCCCccCCC
Q psy11859 713 FENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSG---ERSFKCDWQDCKWQFSRSDELSRHR-RSHFGIKPYPCTL 784 (851)
Q Consensus 713 ~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~g---ekp~~C~~~~C~k~F~~~~~L~~H~-r~H~gekp~~C~~ 784 (851)
+|++++||+| +.|++.|.....|..|+++|++ +++|.|. .|++.|.+...|.+|+ +.|.+++|.....
T Consensus 1 ~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~--~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~ 72 (78)
T 2d9h_A 1 GSSGSSGLQC--EICGFTCRQKASLNWHQRKHAETVAALRFPCE--FCGKRFEKPDSVAAHRSKSHPALLLAPQES 72 (78)
T ss_dssp CCCSCCCEEC--SSSCCEESSHHHHHHHHHHHHHHTTTCCEECT--TTCCEESSHHHHHHHHHHTSTTTSSCCSSS
T ss_pred CCCCCcCeEC--CCCCCeeCCHHHHHHHHHHhhccCCCcccCCC--CCCchhCCHHHHHHHHHHhCCCCCCCcccc
Confidence 4888999999 7899999999999999999986 7899998 8999999999999998 5677777765443
|
| >3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.6e-11 Score=93.50 Aligned_cols=57 Identities=30% Similarity=0.611 Sum_probs=44.9
Q ss_pred CcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcCC
Q psy11859 716 LVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFG 776 (851)
Q Consensus 716 ~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~g 776 (851)
|++||+| +.|++.|.+...|..|+++|++++||.|+ .|++.|.+...|.+|+++|++
T Consensus 1 g~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~hh~ 57 (57)
T 3uk3_C 1 GSSSREC--SYCGKFFRSNYYLNIHLRTHTGEKPYKCE--FCEYAAAQKTSLRYHLERHHK 57 (57)
T ss_dssp ----CBC--TTTCCBCSCHHHHHHHHHHHHCCCCEECS--SSSCEESSHHHHHHHHHHHC-
T ss_pred CCCCccC--CCCcchhCChHHHHHHHHHcCCCCCcCCC--CCcchhCCHHHHHHHHHHhcC
Confidence 4678888 77888888888888888888888888887 788888888888888888763
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.06 E-value=8.4e-10 Score=120.08 Aligned_cols=188 Identities=12% Similarity=0.040 Sum_probs=97.3
Q ss_pred cCCCEEEEecC--ccHHHHHHHHHHHHhCCCccEEEEEecCC--------CCCCHHHHHHHHhcC---hhhHHHhhhCcc
Q psy11859 216 YAGRSVLVTGG--TGFMGKVLLEKLLRSCPDIGKVYILCRAK--------RGLTPKARLAEFSKL---PVFERLRKECPA 282 (851)
Q Consensus 216 ~~~k~VlVTGa--tGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~--------~~~~~~~rl~~~~~~---~~f~~l~~~~~~ 282 (851)
++||+|||||| +|+||+++++.|++.| .+|++++|.. ......+..+.+... ..-+.+.....
T Consensus 7 l~~k~~lVTGa~~s~GIG~aia~~la~~G---~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 82 (319)
T 2ptg_A 7 LRGKTAFVAGVADSNGYGWAICKLLRAAG---ARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPV- 82 (319)
T ss_dssp CTTCEEEEECCCCTTSHHHHHHHHHHHTT---CEEEEEECHHHHHHHHC-------------------------------
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHCC---CEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhccc-
Confidence 57899999999 8999999999999998 6888887642 000000000000000 00011111000
Q ss_pred cCCCeEEEEcCC--CCCc-CC--CC---------HHHHHHH-------hcCccEEEEccccCC-----c----chhHHHH
Q psy11859 283 QLSRLHIIEGDI--LQAN-LG--IK---------DSDLLML-------QEEVSVVFNGAASLK-----L----EAELKEN 332 (851)
Q Consensus 283 ~~~~v~~v~gDi--~~~~-lg--ls---------~~~~~~~-------~~~vd~ViH~AA~~~-----~----~~~~~~~ 332 (851)
....+.++..|+ +++. +- ++ .+++..+ +.++|+|||+||... + .+.++..
T Consensus 83 ~~~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~ 162 (319)
T 2ptg_A 83 DLVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAA 162 (319)
T ss_dssp --CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHH
T ss_pred cccccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHH
Confidence 000124444443 2211 00 00 0022222 237999999998541 2 1356788
Q ss_pred HHHHHHHHHHHHHHHHhc-CCceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCch
Q psy11859 333 VAANTRGTQRLLDIALKM-KKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNS 411 (851)
Q Consensus 333 ~~~Nv~Gt~~ll~~a~~~-~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 411 (851)
+++|+.|+.++++++... ..-.++|++||..+... .|.. ...
T Consensus 163 ~~vN~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~----------~~~~---------------------------~~~ 205 (319)
T 2ptg_A 163 VSSSSYSFVSLLQHFLPLMKEGGSALALSYIASEKV----------IPGY---------------------------GGG 205 (319)
T ss_dssp HHHHTHHHHHHHHHHGGGEEEEEEEEEEEECC------------------------------------------------
T ss_pred HhHhhHHHHHHHHHHHHHHhcCceEEEEeccccccc----------cCcc---------------------------chh
Confidence 999999999999998753 11158999999654321 1110 124
Q ss_pred hhHHHHHHHHHHHHH----h--CCCCEEEEecccccCCC
Q psy11859 412 YTFTKRLTETLVDEY----K--TKLPVVIVRPSIVLPSF 444 (851)
Q Consensus 412 Y~~SK~~aE~~v~~~----~--~~l~~~ivRp~~V~G~~ 444 (851)
|+.||+..+.+.+.+ . .++.+.+|+||.|-.+.
T Consensus 206 Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T~~ 244 (319)
T 2ptg_A 206 MSSAKAALESDCRTLAFEAGRARAVRVNCISAGPLKSRA 244 (319)
T ss_dssp -------THHHHHHHHHHHHHHHCCEEEEEEECCCC---
T ss_pred hHHHHHHHHHHHHHHHHHhccccCeeEEEEeeCCccChh
Confidence 999998888777543 3 38999999999987653
|
| >2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=8.4e-11 Score=96.01 Aligned_cols=62 Identities=16% Similarity=0.256 Sum_probs=57.6
Q ss_pred ceeeeeccceeecCCccccchhhhhhhcccc-c-CCcccccccCCccCccccChhhHHHHHhhhcC
Q psy11859 683 RFWHYFFVIFTQILPAYLVDFIMVLIRQKTF-E-NLVRTFQCTYPECLKFYAKMSHLKAHLRRHSG 746 (851)
Q Consensus 683 ~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~-h-~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~g 746 (851)
++.|++.+||.|+.|++.|.....|..|++. | ++++||+| +.|++.|.+.+.|..|++.|.+
T Consensus 2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C--~~C~k~f~~~~~L~~H~~~~H~ 65 (66)
T 2drp_A 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPC--PFCFKEFTRKDNMTAHVKIIHK 65 (66)
T ss_dssp -CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEEC--TTTCCEESCHHHHHHHHHHHTC
T ss_pred ccccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeEC--CCCCCccCCHHHHHHHHHHHcC
Confidence 4679999999999999999999999999987 8 69999999 8899999999999999998875
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=6.7e-10 Score=141.73 Aligned_cols=168 Identities=17% Similarity=0.105 Sum_probs=118.5
Q ss_pred cCCCEEEEecCccH-HHHHHHHHHHHhCCCccEEEEEe-cCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 216 YAGRSVLVTGGTGF-MGKVLLEKLLRSCPDIGKVYILC-RAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 216 ~~~k~VlVTGatGF-IG~~Lv~~Ll~~g~~v~~V~~l~-R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
++||+||||||+|. ||.++++.|++.| .+|+++. |.... .+.+ .+.+.++.+....++.++.+|
T Consensus 673 l~gKvaLVTGASsGgIG~aIA~~La~~G---A~Vvl~~~R~~~~---l~~~--------~~eL~~~~~~~g~~v~~v~~D 738 (1887)
T 2uv8_A 673 FKDKYVLITGAGKGSIGAEVLQGLLQGG---AKVVVTTSRFSKQ---VTDY--------YQSIYAKYGAKGSTLIVVPFN 738 (1887)
T ss_dssp CTTCEEEEESCCSSSHHHHHHHHHHHTT---CEEEEEESSCCHH---HHHH--------HHHHHHHHCCTTCEEEEEECC
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCC---CEEEEEecCCHHH---HHHH--------HHHHHHHhhcCCCeEEEEEec
Confidence 67999999999998 9999999999998 6788874 44321 1111 112222222223478899999
Q ss_pred CCCCcCCCCHHHHHHHhc-------------CccEEEEccccCCcc----------hhHHHHHHHHHHHHHHHHHHHHhc
Q psy11859 294 ILQANLGIKDSDLLMLQE-------------EVSVVFNGAASLKLE----------AELKENVAANTRGTQRLLDIALKM 350 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~-------------~vd~ViH~AA~~~~~----------~~~~~~~~~Nv~Gt~~ll~~a~~~ 350 (851)
+++++ ++..+++ .+|+|||+||..... +.+...+++|+.|+..++++++..
T Consensus 739 Vsd~~------sV~alv~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~l 812 (1887)
T 2uv8_A 739 QGSKQ------DVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSA 812 (1887)
T ss_dssp TTCHH------HHHHHHHHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred CCCHH------HHHHHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99886 5554432 589999999975321 345678999999999999988544
Q ss_pred CC-----ceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHH-HH
Q psy11859 351 KK-----LVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETL-VD 424 (851)
Q Consensus 351 ~~-----~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~-v~ 424 (851)
+. -.++|++||..+... . ...|+.||+..+.+ ..
T Consensus 813 p~m~~~~~G~IVnISS~ag~~g-----------g-----------------------------~~aYaASKAAL~~Lttr 852 (1887)
T 2uv8_A 813 RGIETRPAQVILPMSPNHGTFG-----------G-----------------------------DGMYSESKLSLETLFNR 852 (1887)
T ss_dssp TTCCSCCEEEEEEECSCTTCSS-----------C-----------------------------BTTHHHHHHHGGGHHHH
T ss_pred hhhhhCCCCEEEEEcChHhccC-----------C-----------------------------CchHHHHHHHHHHHHHH
Confidence 32 258999999643211 1 13499999999998 44
Q ss_pred HHhC----CCCEEEEecccccCC
Q psy11859 425 EYKT----KLPVVIVRPSIVLPS 443 (851)
Q Consensus 425 ~~~~----~l~~~ivRp~~V~G~ 443 (851)
..+. .+.+..|.||.|-++
T Consensus 853 ~lA~ela~~IrVNaV~PG~V~tT 875 (1887)
T 2uv8_A 853 WHSESWANQLTVCGAIIGWTRGT 875 (1887)
T ss_dssp HHHSSCTTTEEEEEEEECCEECC
T ss_pred HHHHHhCCCeEEEEEEecccccc
Confidence 4443 478999999999753
|
| >1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-10 Score=91.50 Aligned_cols=56 Identities=32% Similarity=0.632 Sum_probs=42.9
Q ss_pred cccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCC
Q psy11859 719 TFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778 (851)
Q Consensus 719 ~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gek 778 (851)
||+| +.|++.|.+.+.|..|+++|++++||.|+ .|++.|.+...|.+|+++|++++
T Consensus 1 p~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k 56 (57)
T 1bbo_A 1 KYIC--EECGIRXKKPSMLKKHIRTHTDVRPYHCT--YCNFSFKTKGNLTKHMKSKAHSK 56 (57)
T ss_dssp CCBC--TTTCCBCSSHHHHHHHHHHTSSCCCEECS--SSSCEESSHHHHHHHHHSSSSCC
T ss_pred CCcC--CCCcCcCCCHHHHHHHHHhcCCCCCccCC--CCCchhcCHHHHHHHHHHhcccC
Confidence 5777 67777777777777777777777777776 77777777777777777777664
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=5.8e-10 Score=141.99 Aligned_cols=168 Identities=17% Similarity=0.137 Sum_probs=116.8
Q ss_pred cCCCEEEEecCccH-HHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 216 YAGRSVLVTGGTGF-MGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 216 ~~~k~VlVTGatGF-IG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
++||+||||||+|. ||.++++.|++.| .+|+++.+.... ..+.. .+.+..+......++.++.+|+
T Consensus 650 L~gKvaLVTGASgGgIG~aIAr~LA~~G---A~VVl~~~R~~~--~l~~~--------a~eL~~el~~~G~~v~~v~~DV 716 (1878)
T 2uv9_A 650 FQGKHALMTGAGAGSIGAEVLQGLLSGG---AKVIVTTSRFSR--QVTEY--------YQGIYARCGARGSQLVVVPFNQ 716 (1878)
T ss_dssp CTTCEEEEESCCTTSHHHHHHHHHHHTT---CEEEEEESSCCH--HHHHH--------HHHHHHHHCCTTCEEEEEECCT
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCC---CEEEEEecCChH--HHHHH--------HHHHHHHhhccCCeEEEEEcCC
Confidence 67899999999999 9999999999998 678887543221 11111 1112112112234788999999
Q ss_pred CCCcCCCCHHHHHHHhc-----------CccEEEEccccCCcc----------hhHHHHHHHHHHHHHHHHHHHHhcCC-
Q psy11859 295 LQANLGIKDSDLLMLQE-----------EVSVVFNGAASLKLE----------AELKENVAANTRGTQRLLDIALKMKK- 352 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~-----------~vd~ViH~AA~~~~~----------~~~~~~~~~Nv~Gt~~ll~~a~~~~~- 352 (851)
+|++ ++..+++ .+|+|||+||..... +.+...+++|+.|+.+++++++..+.
T Consensus 717 sd~e------sV~alv~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M 790 (1878)
T 2uv9_A 717 GSKQ------DVEALVNYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGY 790 (1878)
T ss_dssp TCHH------HHHHHHHHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC
T ss_pred CCHH------HHHHHHHHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9886 6655442 589999999965321 44678899999999999887433221
Q ss_pred ----ceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh-
Q psy11859 353 ----LVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK- 427 (851)
Q Consensus 353 ----~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~- 427 (851)
..+||++||..+... . ...|+.||+..+.++....
T Consensus 791 ~~~~~G~IVnISS~ag~~g-----------g-----------------------------~~aYaASKAAL~aLt~~laA 830 (1878)
T 2uv9_A 791 ETRPAQVILPLSPNHGTFG-----------N-----------------------------DGLYSESKLALETLFNRWYS 830 (1878)
T ss_dssp CSCCEEECCEECSCSSSSS-----------C-----------------------------CSSHHHHHHHHTTHHHHHHH
T ss_pred HhCCCCEEEEEcchhhccC-----------C-----------------------------chHHHHHHHHHHHHHHHHHH
Confidence 268999999644211 0 1349999999998865432
Q ss_pred ----CCCCEEEEecccccC
Q psy11859 428 ----TKLPVVIVRPSIVLP 442 (851)
Q Consensus 428 ----~~l~~~ivRp~~V~G 442 (851)
..+.+..|.||.|-|
T Consensus 831 eEla~~IrVNaVaPG~V~g 849 (1878)
T 2uv9_A 831 ESWGNYLTICGAVIGWTRG 849 (1878)
T ss_dssp STTTTTEEEEEEEECCBCC
T ss_pred HHcCCCeEEEEEEecceec
Confidence 258899999999873
|
| >1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-10 Score=92.42 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=53.9
Q ss_pred ceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCC
Q psy11859 691 IFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGER 748 (851)
Q Consensus 691 ~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gek 748 (851)
||.|..|++.|.....|..|+++|++++||.| +.|++.|.+.+.|..|+++|++++
T Consensus 1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~k 56 (57)
T 1bbo_A 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHC--TYCNFSFKTKGNLTKHMKSKAHSK 56 (57)
T ss_dssp CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEEC--SSSSCEESSHHHHHHHHHSSSSCC
T ss_pred CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccC--CCCCchhcCHHHHHHHHHHhcccC
Confidence 68999999999999999999999999999999 889999999999999999999875
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-09 Score=133.42 Aligned_cols=167 Identities=19% Similarity=0.270 Sum_probs=124.3
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHH-HhCCCccEEEEEecCCCCCC-HHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLL-RSCPDIGKVYILCRAKRGLT-PKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll-~~g~~v~~V~~l~R~~~~~~-~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
+-.++++|||||+|-||..+++.|+ +.|. +.|+++.|+..... ..+.++++ +. .-.++.++.+
T Consensus 527 ~~~~~~~lItGg~~GlG~aiA~~la~~~Ga--~~vvl~~R~~~~~~~~~~~~~~l---------~~----~G~~v~~~~~ 591 (795)
T 3slk_A 527 WDAAGTVLVTGGTGALGAEVARHLVIERGV--RNLVLVSRRGPAASGAAELVAQL---------TA----YGAEVSLQAC 591 (795)
T ss_dssp CCTTSEEEEETTTSHHHHHHHHHHHHTSSC--CEEEEEESSGGGSTTHHHHHHHH---------HH----TTCEEEEEEC
T ss_pred cccccceeeccCCCCcHHHHHHHHHHHcCC--cEEEEeccCccchHHHHHHHHHH---------Hh----cCCcEEEEEe
Confidence 4578999999999999999999999 6763 46999999854332 22222222 11 1247899999
Q ss_pred CCCCCcCCCCHHHHHHHhc------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEe
Q psy11859 293 DILQANLGIKDSDLLMLQE------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKMKKLVAFIHF 359 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~~------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~v 359 (851)
|++|++ ++..+++ .+|+|||+|+.... .+.++..+++|+.|+.++.+++ .+.+ .||.+
T Consensus 592 Dvsd~~------~v~~~~~~~~~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~--~~~l-~iV~~ 662 (795)
T 3slk_A 592 DVADRE------TLAKVLASIPDEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELI--DPDV-ALVLF 662 (795)
T ss_dssp CTTCHH------HHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHS--CTTS-EEEEE
T ss_pred ecCCHH------HHHHHHHHHHHhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHH--hhCC-EEEEE
Confidence 999986 7776654 47999999997642 2457788999999999999988 3346 89999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-CCCEEEEecc
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-KLPVVIVRPS 438 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-~l~~~ivRp~ 438 (851)
||+.+.-. .|.. ..|+.||...+.+..+... |+++..|-||
T Consensus 663 SS~ag~~g----------~~g~----------------------------~~YaAaka~~~alA~~~~~~Gi~v~sI~pG 704 (795)
T 3slk_A 663 SSVSGVLG----------SGGQ----------------------------GNYAAANSFLDALAQQRQSRGLPTRSLAWG 704 (795)
T ss_dssp EETHHHHT----------CSSC----------------------------HHHHHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ccHHhcCC----------CCCC----------------------------HHHHHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 99654211 1111 2499999999998887765 9999999999
Q ss_pred cccCC
Q psy11859 439 IVLPS 443 (851)
Q Consensus 439 ~V~G~ 443 (851)
.+-.+
T Consensus 705 ~v~t~ 709 (795)
T 3slk_A 705 PWAEH 709 (795)
T ss_dssp CCSCC
T ss_pred eECcc
Confidence 87654
|
| >3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-10 Score=92.42 Aligned_cols=57 Identities=16% Similarity=0.053 Sum_probs=50.7
Q ss_pred eccceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcC
Q psy11859 688 FFVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSG 746 (851)
Q Consensus 688 ~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~g 746 (851)
+.+||.|..|++.|.....|..|+++|++++||+| +.|++.|.+...|..|+++|.+
T Consensus 1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~hh~ 57 (57)
T 3uk3_C 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKC--EFCEYAAAQKTSLRYHLERHHK 57 (57)
T ss_dssp ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEEC--SSSSCEESSHHHHHHHHHHHC-
T ss_pred CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCC--CCCcchhCCHHHHHHHHHHhcC
Confidence 36799999999999999999999999999999999 8899999999999999999863
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-09 Score=118.32 Aligned_cols=184 Identities=8% Similarity=0.010 Sum_probs=114.3
Q ss_pred CCCEEEEecCcc--HHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 217 AGRSVLVTGGTG--FMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 217 ~~k~VlVTGatG--FIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
++|+||||||++ -||.+++++|++.| .+|++..|..... ...|-.+-.. .-.............+.++.+|+
T Consensus 1 ~~k~~lITGas~~~GIG~aiA~~la~~G---~~Vv~~~~~~~~~-l~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dv 74 (329)
T 3lt0_A 1 NEDICFIAGIGDTNGYGWGIAKELSKRN---VKIIFGIWPPVYN-IFMKNYKNGK--FDNDMIIDKDKKMNILDMLPFDA 74 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTT---CEEEEEECHHHHH-HHHHHHHTTT--TTGGGBCSSSCBCCEEEEEECCT
T ss_pred CCcEEEEECCCCCCchHHHHHHHHHHCC---CEEEEEecCcccc-ccccchHHHH--HHHHHHHhhcccccccccccccc
Confidence 478999999975 89999999999998 6888776543100 0001000000 00000011111234578899999
Q ss_pred CCCcCC-CCHH-------------HHHHH-------hcCccEEEEccccC-----Cc----chhHHHHHHHHHHHHHHHH
Q psy11859 295 LQANLG-IKDS-------------DLLML-------QEEVSVVFNGAASL-----KL----EAELKENVAANTRGTQRLL 344 (851)
Q Consensus 295 ~~~~lg-ls~~-------------~~~~~-------~~~vd~ViH~AA~~-----~~----~~~~~~~~~~Nv~Gt~~ll 344 (851)
++.... ++.+ ++..+ ...+|++||+||.. .+ .+.+...+++|+.|+..+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~ 154 (329)
T 3lt0_A 75 SFDTANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLC 154 (329)
T ss_dssp TCSSGGGCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHH
T ss_pred cccchhhhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHH
Confidence 987211 1111 22222 23689999999853 11 2356788999999999999
Q ss_pred HHHHhcC-CceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHH
Q psy11859 345 DIALKMK-KLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLV 423 (851)
Q Consensus 345 ~~a~~~~-~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v 423 (851)
+++...- .-.++|++||..+... .|.. ...|+.||+..+.+.
T Consensus 155 ~~~~p~m~~~g~Iv~isS~~~~~~----------~~~~---------------------------~~~Y~asKaal~~~~ 197 (329)
T 3lt0_A 155 KYFVNIMKPQSSIISLTYHASQKV----------VPGY---------------------------GGGMSSAKAALESDT 197 (329)
T ss_dssp HHHGGGEEEEEEEEEEECGGGTSC----------CTTC---------------------------TTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCeEEEEeCccccCC----------CCcc---------------------------hHHHHHHHHHHHHHH
Confidence 9986531 1147999999654321 1111 014999999888777
Q ss_pred HHH----h--CCCCEEEEecccccCC
Q psy11859 424 DEY----K--TKLPVVIVRPSIVLPS 443 (851)
Q Consensus 424 ~~~----~--~~l~~~ivRp~~V~G~ 443 (851)
+.. . .++.+..|.||.|-.+
T Consensus 198 ~~la~el~~~~gI~vn~v~PG~v~T~ 223 (329)
T 3lt0_A 198 RVLAYHLGRNYNIRINTISAGPLKSR 223 (329)
T ss_dssp HHHHHHHHHHHCCEEEEEEECCCCCH
T ss_pred HHHHHHhCCccCeEEEEEecceeech
Confidence 543 3 3899999999988643
|
| >2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.6e-10 Score=98.68 Aligned_cols=60 Identities=25% Similarity=0.355 Sum_probs=41.9
Q ss_pred ccccCCccCccccChhhHHHHHhh-hcCCCc--------cccCccccCccccCchhHHHhhhhcCCCCCccCC
Q psy11859 720 FQCTYPECLKFYAKMSHLKAHLRR-HSGERS--------FKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783 (851)
Q Consensus 720 ~~C~~~~Cgk~F~~~~~L~~H~~~-H~gekp--------~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~ 783 (851)
|+| +.|++.|.....|..|+++ |+++++ |.|. .|++.|.+...|.+|+++|++++||.|+
T Consensus 26 ~~C--~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~--~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 94 (95)
T 2ej4_A 26 RPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECP--REGKSFKAKYKLVNHIRVHTGEKSGPSS 94 (95)
T ss_dssp SSC--CCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCS--STTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred Ccc--cccccccCCHHHHHHHHHHhccCCCCCCccceeccCCC--CCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence 456 5666666666666666665 666665 6776 6777777777777777777777777775
|
| >2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=4.9e-10 Score=89.51 Aligned_cols=56 Identities=39% Similarity=0.810 Sum_probs=41.1
Q ss_pred ccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhh-hhcCCC
Q psy11859 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHR-RSHFGI 777 (851)
Q Consensus 718 r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~-r~H~ge 777 (851)
+||+| +.|++.|.+.+.|..|+++|++++||.|+ .|++.|.+...|.+|+ +.|+++
T Consensus 1 k~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~H~~~ 57 (60)
T 2adr_A 1 RSFVC--EVCTRAFARQEHLKRHYRSHTNEKPYPCG--LCNRAFTRRDLLIRHAQKIHSGN 57 (60)
T ss_dssp CCBCC--TTTCCCBSCHHHHHHHHHTTTSSCSEECT--TTCCEESSHHHHHHHHTTTSCCS
T ss_pred CcCcC--CCCccccCCHHHHHHHHHHhCCCCCccCC--CCCCccCCHHHHHHHHHHHcCCc
Confidence 46777 67777777777777777777777777776 6777777777777775 566654
|
| >2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.6e-10 Score=96.44 Aligned_cols=66 Identities=14% Similarity=0.037 Sum_probs=60.7
Q ss_pred eeeccceeecCCccccchhhhhhhcccccCC---cccccccCCccCccccChhhHHHHH-hhhcCCCccccC
Q psy11859 686 HYFFVIFTQILPAYLVDFIMVLIRQKTFENL---VRTFQCTYPECLKFYAKMSHLKAHL-RRHSGERSFKCD 753 (851)
Q Consensus 686 h~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~---~r~~~C~~~~Cgk~F~~~~~L~~H~-~~H~gekp~~C~ 753 (851)
|++.+||.|..|++.|.....|..|+++|++ ++||+| +.|++.|.....|..|+ ..|.++++....
T Consensus 2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C--~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~ 71 (78)
T 2d9h_A 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPC--EFCGKRFEKPDSVAAHRSKSHPALLLAPQE 71 (78)
T ss_dssp CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEEC--TTTCCEESSHHHHHHHHHHTSTTTSSCCSS
T ss_pred CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCC--CCCCchhCCHHHHHHHHHHhCCCCCCCccc
Confidence 7889999999999999999999999999996 899999 88999999999999999 678888876654
|
| >2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=5.7e-10 Score=98.08 Aligned_cols=63 Identities=19% Similarity=0.137 Sum_probs=58.8
Q ss_pred ccceeecCCccccchhhhhhhcccc-cCCccc--------ccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 689 FVIFTQILPAYLVDFIMVLIRQKTF-ENLVRT--------FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 689 ~~~~~c~~c~~~~~~~~~l~~h~~~-h~~~r~--------~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
...|.|..|++.|.....|..|+++ |+++++ |.| +.|++.|.+...|..|+++|++++||.|+
T Consensus 23 ~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 94 (95)
T 2ej4_A 23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEEC--PREGKSFKAKYKLVNHIRVHTGEKSGPSS 94 (95)
T ss_dssp CSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTC--SSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred cCCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCC--CCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence 3457899999999999999999997 999988 999 89999999999999999999999999995
|
| >2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=3.5e-10 Score=90.39 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=53.2
Q ss_pred cceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHH-hhhcCCC
Q psy11859 690 VIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHL-RRHSGER 748 (851)
Q Consensus 690 ~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~-~~H~gek 748 (851)
+||.|+.|++.|.....|..|+++|++++||+| +.|++.|.+...|..|+ +.|+++.
T Consensus 1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~~H~~~~ 58 (60)
T 2adr_A 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPC--GLCNRAFTRRDLLIRHAQKIHSGNL 58 (60)
T ss_dssp CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEEC--TTTCCEESSHHHHHHHHTTTSCCSS
T ss_pred CcCcCCCCccccCCHHHHHHHHHHhCCCCCccC--CCCCCccCCHHHHHHHHHHHcCCcC
Confidence 579999999999999999999999999999999 88999999999999997 6888753
|
| >2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=5.9e-10 Score=83.90 Aligned_cols=43 Identities=26% Similarity=0.436 Sum_probs=28.4
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2ytn_A 2 SSGSSGTGKKPYKC--NECGKVFTQNSHLARHRGIHTGEKPSGPS 44 (46)
T ss_dssp CCCCCCSCCSSCBC--TTTCCBCSSHHHHHHHGGGTSCCCCCSCC
T ss_pred CCCcCCCCCcCeEC--CCCCCeeCCHHHHHHHhhhcCCCCCCCCC
Confidence 46666666666666 56666666666666666666666666665
|
| >2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.2e-10 Score=83.77 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=29.6
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
+|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2em0_A 2 SSGSSGMGEKTWKC--RECDMCFSQASSLRLHQNVHVGEKPSGPS 44 (46)
T ss_dssp CCCCCSCCCCCCCC--SSSCCCCSSHHHHHHHGGGGSSSSCSCSS
T ss_pred CCcCccCCCcCeEC--CCCCcccCCHHHHHHHHHHcCCCCCcCCC
Confidence 46666777777777 66777777777777777677766676665
|
| >2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A | Back alignment and structure |
|---|
Probab=98.87 E-value=6e-10 Score=83.89 Aligned_cols=43 Identities=26% Similarity=0.413 Sum_probs=30.6
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||+|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2ely_A 2 SSGSSGTGEKPFKC--VECGKGFSRRSALNVHHKLHTGEKPSGPS 44 (46)
T ss_dssp CCCCCCCCCCSBCC--SSSCCCBSSTTHHHHHHHHHSCCSSCSCC
T ss_pred CCCCCCCCCCCccc--CccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence 46677777777777 66777777777777777777777777775
|
| >2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=6.7e-10 Score=83.62 Aligned_cols=43 Identities=23% Similarity=0.441 Sum_probs=28.9
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|.
T Consensus 2 ~h~~~h~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2elz_A 2 SSGSSGSVEKPYKC--EDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44 (46)
T ss_dssp CCCSCCCCCSSCBC--SSSCCBCSSHHHHHHHGGGGGSCCCCCSC
T ss_pred CCCCCCCCCCCeeC--cccCchhCCHHHHHHHHHhcCCCCCCCCC
Confidence 36666666666666 56666666666666666666666666665
|
| >2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=5.9e-10 Score=83.96 Aligned_cols=43 Identities=26% Similarity=0.429 Sum_probs=29.5
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2emf_A 2 SSGSSGTGGKHFEC--TECGKAFTRKSTLSMHQKIHTGEKPSGPS 44 (46)
T ss_dssp CCCSSSSSSCCEEC--SSSCCEESCHHHHHHHGGGTSCSSCSCCC
T ss_pred ccccccCCCCCeEC--CCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence 46666777777777 56777777777777777777666666665
|
| >2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=6.7e-10 Score=83.57 Aligned_cols=42 Identities=24% Similarity=0.388 Sum_probs=27.6
Q ss_pred cccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 710 QKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 710 h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 3 H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2epz_A 3 SGSSGTGEKPFDC--IDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44 (46)
T ss_dssp CCSSCCCCCSBCC--TTTCCCBSSHHHHHHHHTTTTTCCCCSSC
T ss_pred CCCCcCCCCCeEC--CCCCceeCCHHHHHHHHHHhCCCCCCCCC
Confidence 5666666666666 56666666666666666666666666665
|
| >2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=7.1e-10 Score=83.48 Aligned_cols=43 Identities=28% Similarity=0.427 Sum_probs=28.3
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2ytq_A 2 SSGSSGAGEKPYGC--SECGKAFSSKSYLIIHMRTHSGEKPSGPS 44 (46)
T ss_dssp CCSSCSSCCCSCBC--SSSCCBCSCHHHHHHHHTTTCCSCSSCCC
T ss_pred CCCcCcCCCCCcCC--CccChhhCChHHHHHHHHHhCCCCCCCCC
Confidence 36666666666666 56666666666666666666666666665
|
| >2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=6.1e-10 Score=83.75 Aligned_cols=43 Identities=26% Similarity=0.386 Sum_probs=30.7
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2eq4_A 2 SSGSSGTGEKLYNC--KECGKSFSRAPCLLKHERLHSGEKPSGPS 44 (46)
T ss_dssp CCCCCSSCCCCCCB--TTTTBCCSCHHHHHHHHHHCCSSSCCCCC
T ss_pred CCcccCCCCCCeEC--CCCCCccCchHHHHHHHHhcCCCCCCCCC
Confidence 46677777777777 66777777777777777777777777775
|
| >2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A | Back alignment and structure |
|---|
Probab=98.87 E-value=6.1e-10 Score=83.86 Aligned_cols=43 Identities=26% Similarity=0.472 Sum_probs=32.5
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
+|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2emk_A 2 SSGSSGTGEKPYEC--KECGKAFSQTTHLIQHQRVHTGEKPSGPS 44 (46)
T ss_dssp CCCCCCSSSCSCBC--SSSCCBCSCHHHHHHHHHHHSSCCCSSCC
T ss_pred CCCCccCCCCceEC--CCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence 57777777777777 67777777777777777777777777775
|
| >2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A | Back alignment and structure |
|---|
Probab=98.87 E-value=6.2e-10 Score=83.73 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=29.0
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
+|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2el4_A 2 SSGSSGTGVKPYGC--SQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44 (46)
T ss_dssp CCCCCSCCCCSEEC--SSSSCEESSHHHHHHHGGGSSSCCCSCCT
T ss_pred ccccCCCCCCceEC--CCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence 46666666666666 56666666666666666666666666665
|
| >2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=6e-10 Score=83.84 Aligned_cols=43 Identities=26% Similarity=0.407 Sum_probs=29.3
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2ene_A 2 SSGSSGTGEKPYKC--NECGKVFRHNSYLSRHQRIHTGEKPSGPS 44 (46)
T ss_dssp CCCSSCCCSSSEEC--SSSCCEESSHHHHHHHHTTTCCCCCCSCC
T ss_pred CcccCCCCCCCeEC--CCCCchhCChHHHHHHHhhcCCCCCCCCC
Confidence 46666776777777 56777776666666666666666666665
|
| >2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.2e-10 Score=83.32 Aligned_cols=42 Identities=21% Similarity=0.292 Sum_probs=29.1
Q ss_pred cccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 710 QKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 710 h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
|+++|++++||+| +.||+.|.+.+.|..|+++|++++||.|+
T Consensus 1 H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 42 (44)
T 2emx_A 1 GSSGSSGEKPFGC--SCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42 (44)
T ss_dssp CCCCCSSCCCEEC--SSSSCEESSHHHHHHHHHHHTSSCSCSCC
T ss_pred CCCCcCCCcCccC--CCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence 5666777777777 56777777777777777777777777665
|
| >2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=7e-10 Score=83.48 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=28.3
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2em7_A 2 SSGSSGTGEKPYKC--EECGKGFICRRDLYTHHMVHTGEKPSGPS 44 (46)
T ss_dssp CCCCSSSCCCSEEC--SSSCCEESCHHHHHHHGGGGTTCCCSSTT
T ss_pred CCCCCCCCCcCccC--CCccchhCCHHHHHHHHHHhCCCCCCCCC
Confidence 36666666666666 56666666666666666666666666665
|
| >2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=6.4e-10 Score=83.65 Aligned_cols=43 Identities=26% Similarity=0.443 Sum_probs=29.4
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~~~~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2eoe_A 2 SSGSSGTGEKPYKC--NECGKVFTQNSHLANHQRIHTGVKPSGPS 44 (46)
T ss_dssp CCSSCCCCCCSSEE--TTTTEECSSHHHHHHHHGGGSCCCSCSSC
T ss_pred CCCCCCCCCCCeEC--CCcChhhCCHHHHHHHHHHcCCCCCCCCC
Confidence 46666777777777 56777777777777776666666666665
|
| >2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=6.4e-10 Score=83.69 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=31.5
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
+|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2eml_A 2 SSGSSGTGEKPYEC--SVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44 (46)
T ss_dssp CCCCCCSSCCSEEC--SSSCCEESSHHHHHHHHGGGSSCCCSCSS
T ss_pred CccCCcCCCCCeeC--CCcCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence 56777777777777 66777777777777777777777777775
|
| >2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=5.8e-10 Score=83.87 Aligned_cols=43 Identities=28% Similarity=0.413 Sum_probs=31.1
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2emm_A 2 SSGSSGTGERPHKC--NECGKSFIQSAHLIQHQRIHTGEKPSGPS 44 (46)
T ss_dssp CCCSCSSCCCSEEC--SSSCCEESSHHHHHHHHHHHSCCCTTSSS
T ss_pred CCcCCcCCCCCeeC--CCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence 46777777777777 66777777777777777777777777775
|
| >2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=7e-10 Score=83.49 Aligned_cols=43 Identities=23% Similarity=0.394 Sum_probs=29.5
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2ep2_A 2 SSGSSGTGEKPYEC--SICGKSFTKKSQLHVHQQIHTGEKPSGPS 44 (46)
T ss_dssp CSSSCSSCCCSEEC--SSSCCEESSHHHHHHHHHTTSSCCSCCSC
T ss_pred CCCCCCCCCcCcCC--CCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence 46666777777777 56777777777777777677666666665
|
| >2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=7.4e-10 Score=83.28 Aligned_cols=43 Identities=26% Similarity=0.325 Sum_probs=29.3
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
+|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2eop_A 2 SSGSSGTGEKPHEC--RECGKSFSFNSQLIVHQRIHTGENPSGPS 44 (46)
T ss_dssp CCCCSCCCCCSCBC--TTTCCBCSSHHHHHHHHTTTTTSCCSCCC
T ss_pred CCccccCCCCCeeC--CCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence 46666777777777 56777777666677776666666666665
|
| >2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.5e-09 Score=81.70 Aligned_cols=45 Identities=29% Similarity=0.549 Sum_probs=38.8
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
+|+++|++++||.|+ .|++.|.++..|.+|+++|++++||.|+.|
T Consensus 2 ~H~~~H~~~k~~~C~--~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2emk_A 2 SSGSSGTGEKPYECK--ECGKAFSQTTHLIQHQRVHTGEKPSGPSSG 46 (46)
T ss_dssp CCCCCCSSSCSCBCS--SSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred CCCCccCCCCceECC--CCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 367788888888887 888888888888888888888888888887
|
| >1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=7.1e-10 Score=92.41 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=56.8
Q ss_pred ceeeeeccceeec--CCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhc
Q psy11859 683 RFWHYFFVIFTQI--LPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHS 745 (851)
Q Consensus 683 ~~~h~~~~~~~c~--~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~ 745 (851)
...|.+.++|.|. .|++.|.....|..|+++|++++||+| +.||+.|...+.|..|+++|+
T Consensus 11 ~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~Ht 73 (73)
T 1f2i_G 11 NYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHT 73 (73)
T ss_dssp SCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEEC--TTTCCEESCHHHHHHHHTTCC
T ss_pred hccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeEC--CCCCchhCCHHHHHHHHHhcC
Confidence 4457889999997 699999999999999999999999999 899999999999999999985
|
| >2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=7.5e-10 Score=83.30 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=31.5
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2eoq_A 2 SSGSSGTGEKPFKC--DICGKSFCGRSRLNRHSMVHTAEKPSGPS 44 (46)
T ss_dssp CCCCCSSSSCSCCC--SSSCCCCSSHHHHHHHHHHTTCCCSSSCC
T ss_pred CCCCCCCCCCCcCC--CcCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence 46777777777777 66777777777777777777777777775
|
| >2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=7.8e-10 Score=83.18 Aligned_cols=43 Identities=26% Similarity=0.439 Sum_probs=29.7
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|.
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2ytr_A 2 SSGSSGTGEKPYKC--NECGKAFSQTSKLARHQRIHTGEKPSGPS 44 (46)
T ss_dssp CSSCCCSSCCTTCC--TTTCCCCSSHHHHHHHHTTTTTCSCCCSC
T ss_pred CCCcCCCCCcCcCC--CCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence 46667777777777 56777777777777777777776777665
|
| >2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A | Back alignment and structure |
|---|
Probab=98.85 E-value=6.7e-10 Score=83.59 Aligned_cols=43 Identities=23% Similarity=0.448 Sum_probs=31.7
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
+|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2ema_A 2 SSGSSGTGEKRYKC--NECGKVFSRNSQLSQHQKIHTGEKPSGPS 44 (46)
T ss_dssp CSCSSCTTSCCEEC--SSSCCEESSHHHHHHHHTGGGCCCCCSSS
T ss_pred CCccCCCCCcCcCC--CCCcchhCCHHHHHHHHHhcCCCCCCCCC
Confidence 46777777777777 66777777777777777777777777775
|
| >2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=6.8e-10 Score=83.55 Aligned_cols=43 Identities=26% Similarity=0.428 Sum_probs=29.4
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2eq0_A 2 SSGSSGTGEKPYKC--HECGKVFRRNSHLARHQLIHTGEKPSGPS 44 (46)
T ss_dssp CCCCCTTCCCCEEC--TTTCCEESSHHHHHHHHTTTCCCCCSCCS
T ss_pred CCCcCCCCCCCeEC--CCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence 46666777777777 56777777777777776666666666665
|
| >2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.3e-09 Score=81.89 Aligned_cols=44 Identities=32% Similarity=0.494 Sum_probs=34.1
Q ss_pred HHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 740 H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
|+++|++++||.|+ .|++.|.+...|.+|+++|++++||.|+.|
T Consensus 3 H~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2eml_A 3 SGSSGTGEKPYECS--VCGKAFSHRQSLSVHQRIHSGKKPSGPSSG 46 (46)
T ss_dssp CCCCCSSCCSEECS--SSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred ccCCcCCCCCeeCC--CcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence 66777777777776 777777777777777777777777777776
|
| >2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A | Back alignment and structure |
|---|
Probab=98.85 E-value=7.9e-10 Score=83.13 Aligned_cols=43 Identities=28% Similarity=0.361 Sum_probs=28.4
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|.
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2em9_A 2 SSGSSGTGEKPYNC--KECGKSFRWASCLLKHQRVHSGEKPSGPS 44 (46)
T ss_dssp CSCCSCCCCCSEEC--SSSCCEESSHHHHHHHGGGGTSCCCCSTT
T ss_pred CCCCCCCCCcCeEC--CccccccCChHHHHHHHHHhCCCCCCCCC
Confidence 46666666666666 56666666666666666666666666665
|
| >2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-09 Score=81.63 Aligned_cols=45 Identities=29% Similarity=0.516 Sum_probs=37.1
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
+|+++|++++||.|+ .|++.|.++..|.+|+++|++++||.|+.|
T Consensus 2 ~H~~~H~~~k~~~C~--~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2em0_A 2 SSGSSGMGEKTWKCR--ECDMCFSQASSLRLHQNVHVGEKPSGPSSG 46 (46)
T ss_dssp CCCCCSCCCCCCCCS--SSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred CCcCccCCCcCeECC--CCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence 367788888888887 788888888888888888888888888877
|
| >2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=7.9e-10 Score=83.17 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=29.9
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2ytj_A 2 SSGSSGTGEKPYIC--AECGKAFTIRSNLIKHQKIHTKQKPSGPS 44 (46)
T ss_dssp CSSCTTSSCCSEEC--SSSCCEESSHHHHHHHHHHTSCCCCSSCS
T ss_pred CcccCCCCCcCeEC--CCCChhhCCHHHHHHHHHHcCCCCCCCCC
Confidence 46667777777777 56777777777777777777777777665
|
| >2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=7.3e-10 Score=83.38 Aligned_cols=43 Identities=30% Similarity=0.473 Sum_probs=23.1
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2ytg_A 2 SSGSSGTGEKPFKC--GECGKSYNQRVHLTQHQRVHTGEKPSGPS 44 (46)
T ss_dssp CCCCCCSSCCSEEC--TTTCCEESSSHHHHTTGGGGSSCCSSCSC
T ss_pred CCCCCCCCCCCeEC--CCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence 35555555555555 44555555555555555555555555554
|
| >2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-09 Score=81.48 Aligned_cols=45 Identities=29% Similarity=0.564 Sum_probs=36.9
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
.|+++|++++||.|+ .|++.|.++..|.+|+++|++++||.|+.|
T Consensus 2 ~H~~~H~~~k~~~C~--~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2ytn_A 2 SSGSSGTGKKPYKCN--ECGKVFTQNSHLARHRGIHTGEKPSGPSSG 46 (46)
T ss_dssp CCCCCCSCCSSCBCT--TTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred CCCcCCCCCcCeECC--CCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence 366778888888887 788888888888888888888888888877
|
| >2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-09 Score=81.51 Aligned_cols=45 Identities=31% Similarity=0.459 Sum_probs=38.6
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
.|+++|++++||.|+ .|++.|.++..|.+|+++|++++||.|+.|
T Consensus 2 ~H~~~H~~~~~~~C~--~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2eoq_A 2 SSGSSGTGEKPFKCD--ICGKSFCGRSRLNRHSMVHTAEKPSGPSSG 46 (46)
T ss_dssp CCCCCSSSSCSCCCS--SSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred CCCCCCCCCCCcCCC--cCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 367788888888887 788888888888888888888888888887
|
| >2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-09 Score=82.20 Aligned_cols=43 Identities=33% Similarity=0.469 Sum_probs=33.3
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||.| +.||+.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2eoo_A 2 SSGSSGSGERPYGC--NECGKNFGRHSHLIEHLKRHFREKSSGPS 44 (46)
T ss_dssp CCCCCCSCCCCEEC--SSSCCEESSHHHHHHHHHHHHSTTSSCCS
T ss_pred CCCCCCCCCCCEEc--cccCcccCCHHHHHHHHHHHcCCCCCCCC
Confidence 57777777777877 67777777777777777777777777776
|
| >2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-09 Score=81.42 Aligned_cols=45 Identities=31% Similarity=0.507 Sum_probs=37.9
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
.|+++|++++||.|+ .|++.|.+...|.+|+++|++++||.|+.|
T Consensus 2 ~H~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2eq4_A 2 SSGSSGTGEKLYNCK--ECGKSFSRAPCLLKHERLHSGEKPSGPSSG 46 (46)
T ss_dssp CCCCCSSCCCCCCBT--TTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred CCcccCCCCCCeECC--CCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence 367788888888887 788888888888888888888888888877
|
| >2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=9e-10 Score=82.81 Aligned_cols=43 Identities=21% Similarity=0.313 Sum_probs=28.7
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2eme_A 2 SSGSSGSGEKPYVC--DYCGKAFGLSAELVRHQRIHTGEKPSGPS 44 (46)
T ss_dssp CCCCTTCCCCSEEC--SSSCCEESSHHHHHHHHGGGCCCSCCSSC
T ss_pred CCCCCCCCCCCeEC--CCCChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence 46666666666666 56666666666666666666666666665
|
| >2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=8.2e-10 Score=83.04 Aligned_cols=43 Identities=23% Similarity=0.409 Sum_probs=32.1
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
+|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2eov_A 2 SSGSSGTGEKPYKC--SDCGKSFTWKSRLRIHQKCHTGERHSGPS 44 (46)
T ss_dssp CCCCCCSSCCSCBC--SSSCCBCSSHHHHHHHHHHHSCCSSCCSC
T ss_pred CCCCCCCCCCCccC--CccChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence 57777777777777 66777777777777777777777777775
|
| >2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=8e-10 Score=83.09 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=29.1
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.||+.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2epw_A 2 SSGSSGTGEKPCKC--TECGKAFCWKSQLIMHQRTHVDDKHSGPS 44 (46)
T ss_dssp CCCCCCCCCCSEEC--SSSCCEESSSHHHHHHHHHCCSCCCSCCC
T ss_pred cCcccCCCCCCeeC--CCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence 46666666666766 56666666666666666666666666665
|
| >2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=8.7e-10 Score=82.93 Aligned_cols=43 Identities=28% Similarity=0.465 Sum_probs=26.9
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2en1_A 2 SSGSSGSGEKPFKC--EECGKRFTQNSQLHSHQRVHTGEKPSGPS 44 (46)
T ss_dssp CSTTCCCCCCSEEE--TTTTEEESSHHHHHHHGGGGSCCCCSCCC
T ss_pred CcccCCCCCCCeeC--CCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence 45666666666666 55666666666666666666666666664
|
| >2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=7.6e-10 Score=83.22 Aligned_cols=43 Identities=26% Similarity=0.378 Sum_probs=30.7
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
+|+++|++++||+| +.|++.|.+.+.|..|+++|++++||+|+
T Consensus 2 ~H~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2en8_A 2 SSGSSGSGEKSHTC--DECGKNFCYISALRIHQRVHMGEKCSGPS 44 (46)
T ss_dssp CCCCCCCCCSSEEC--TTTCCEESSHHHHHHHHTTTCCSCSSCCS
T ss_pred CccccCCCCCCeEC--CCcCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence 46677777777777 66777777777777777777777777775
|
| >2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.4e-09 Score=81.76 Aligned_cols=45 Identities=24% Similarity=0.467 Sum_probs=36.4
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
.|+++|++++||.|+ .|++.|.++..|.+|+++|++++||.|++|
T Consensus 2 ~H~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c 46 (46)
T 2ep2_A 2 SSGSSGTGEKPYECS--ICGKSFTKKSQLHVHQQIHTGEKPSGPSSG 46 (46)
T ss_dssp CSSSCSSCCCSEECS--SSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred CCCCCCCCCcCcCCC--CCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 366778888888887 788888888888888888888888888876
|
| >2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=7.9e-10 Score=83.22 Aligned_cols=43 Identities=28% Similarity=0.443 Sum_probs=29.4
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
+|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2em5_A 2 SSGSSGSSTKSHQC--HECGRGFTLKSHLNQHQRIHTGEKPSGPS 44 (46)
T ss_dssp CCCCCCCCSCSEEC--SSSCCEESSHHHHHHHHTTTSCSCCSSCC
T ss_pred CCcCCCCCCCCeEC--CcCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence 46666777777777 56777777777777776666666666665
|
| >2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-09 Score=81.44 Aligned_cols=45 Identities=33% Similarity=0.523 Sum_probs=38.3
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
.|+++|++++||.|. .|++.|.++..|.+|+++|++++||.|++|
T Consensus 2 ~H~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2emm_A 2 SSGSSGTGERPHKCN--ECGKSFIQSAHLIQHQRIHTGEKPSGPSSG 46 (46)
T ss_dssp CCCSCSSCCCSEECS--SSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred CCcCCcCCCCCeeCC--CCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 367788888888887 788888888888888888888888888887
|
| >2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A | Back alignment and structure |
|---|
Probab=98.84 E-value=1.4e-09 Score=81.79 Aligned_cols=44 Identities=30% Similarity=0.504 Sum_probs=32.9
Q ss_pred HHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 740 H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
|+++|++++||.|+ .|++.|.+...|.+|+++|++++||.|+.|
T Consensus 3 H~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2el4_A 3 SGSSGTGVKPYGCS--QCAKTFSLKSQLIVHQRSHTGVKPSGPSSG 46 (46)
T ss_dssp CCCCSCCCCSEECS--SSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred cccCCCCCCceECC--CCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 56677777777776 677777777777777777777777777766
|
| >2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=6.4e-10 Score=83.71 Aligned_cols=43 Identities=26% Similarity=0.447 Sum_probs=30.6
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2yu8_A 2 SSGSSGTGEKPYKC--NECGKVFTQNSHLARHRRVHTGGKPSGPS 44 (46)
T ss_dssp CCCCCCCCCSSEEC--SSSCCEESSSHHHHHHTHHHHSCCCSCSC
T ss_pred CcCcCCCCCCCeEC--CcCCchhCCHHHHHHHHHhcCCCCCCCCC
Confidence 46677777777777 66777777777777777777777777775
|
| >2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=7.6e-10 Score=83.26 Aligned_cols=43 Identities=26% Similarity=0.454 Sum_probs=32.0
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2ytd_A 2 SSGSSGSGEKPYKC--SECGKAFHRHTHLNEHRRIHTGYRPSGPS 44 (46)
T ss_dssp CCCCCSCCCCSEEC--SSSCCEESSHHHHHHHHHHHTCCCSSCSS
T ss_pred CCccccCCCcCeEC--CCCCCeeCChHHHHHHHHHcCCCCCCCCC
Confidence 56777777777777 66777777777777777777777777775
|
| >2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-09 Score=81.42 Aligned_cols=45 Identities=33% Similarity=0.603 Sum_probs=36.3
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
+|+++|++++||.|+ .|++.|.++..|.+|+++|++++||.|+.|
T Consensus 2 ~H~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c 46 (46)
T 2ema_A 2 SSGSSGTGEKRYKCN--ECGKVFSRNSQLSQHQKIHTGEKPSGPSSG 46 (46)
T ss_dssp CSCSSCTTSCCEECS--SSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred CCccCCCCCcCcCCC--CCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence 366778888888887 788888888888888888888888888876
|
| >2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=7.1e-10 Score=83.44 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=32.7
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.||+.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2emy_A 2 SSGSSGTGENPYEC--HECGKAFSRKYQLISHQRTHAGEKPSGPS 44 (46)
T ss_dssp CCCCCCCSSCCEEC--SSSCCEESSHHHHHHHHHHHTTSCCSCSS
T ss_pred CCCCCCCCCcCcCC--CCCCcccCcHHHHHHHHHHcCCCCCCCCC
Confidence 57777777777777 67777777777777777777777777775
|
| >2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-09 Score=81.47 Aligned_cols=44 Identities=30% Similarity=0.519 Sum_probs=34.6
Q ss_pred HHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 740 H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
|+++|++++||.|+ .|++.|.++..|.+|+++|++++||.|+.|
T Consensus 3 H~~~H~~~k~~~C~--~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c 46 (46)
T 2emf_A 3 SGSSGTGGKHFECT--ECGKAFTRKSTLSMHQKIHTGEKPSGPSSG 46 (46)
T ss_dssp CCSSSSSSCCEECS--SSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred cccccCCCCCeECC--CCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 66777778888887 788888888888888888888888888776
|
| >2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=8.6e-10 Score=82.97 Aligned_cols=43 Identities=28% Similarity=0.373 Sum_probs=30.0
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~h~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2enc_A 2 SSGSSGSGEKPFKC--EECGKGFYTNSQCYSHQRSHSGEKPSGPS 44 (46)
T ss_dssp CCSSCCCCCCSEEC--SSSCCEESSHHHHHHHHHHSCCSSCCSSC
T ss_pred CCCCCCCCCCCcCC--CCCCCcCCChHHHHHHHHHhCCCCCCCCC
Confidence 46667777777777 66777777777777777777777777765
|
| >2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.7e-09 Score=80.47 Aligned_cols=44 Identities=30% Similarity=0.406 Sum_probs=38.3
Q ss_pred HHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 740 H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
|+++|++++||.|+ .|++.|.+...|.+|+++|++++||.|+.|
T Consensus 1 H~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 44 (44)
T 2emx_A 1 GSSGSSGEKPFGCS--CCEKAFSSKSYLLVHQQTHAEEKPSGPSSG 44 (44)
T ss_dssp CCCCCSSCCCEECS--SSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred CCCCcCCCcCccCC--CCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 56788888899997 899999999999999888998899988887
|
| >2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A | Back alignment and structure |
|---|
Probab=98.83 E-value=2e-09 Score=80.97 Aligned_cols=44 Identities=34% Similarity=0.526 Sum_probs=38.6
Q ss_pred HHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 740 H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
|+++|++++||.|+ .|++.|.++..|.+|+++|++++||.|+.|
T Consensus 3 H~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2ely_A 3 SGSSGTGEKPFKCV--ECGKGFSRRSALNVHHKLHTGEKPSGPSSG 46 (46)
T ss_dssp CCCCCCCCCSBCCS--SSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred CCCCCCCCCCcccC--ccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 67788888899997 899999998999999888988899998887
|
| >2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.6e-09 Score=81.41 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=38.0
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
+|+++|++++||.|+ .|++.|.+...|.+|+++|++++||.|++|
T Consensus 2 ~H~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c 46 (46)
T 2ytj_A 2 SSGSSGTGEKPYICA--ECGKAFTIRSNLIKHQKIHTKQKPSGPSSG 46 (46)
T ss_dssp CSSCTTSSCCSEECS--SSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred CcccCCCCCcCeECC--CCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 467788888888887 788888888888888888888888888876
|
| >2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=7.4e-10 Score=83.34 Aligned_cols=43 Identities=28% Similarity=0.499 Sum_probs=32.8
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
+|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2ytk_A 2 SSGSSGSGEKPYKC--NECGKVFTQNSHLTNHWRIHTGEKPSGPS 44 (46)
T ss_dssp CCCCCSSSSCSEEC--SSSCCEESSHHHHHHHHHHHSSSSCSSCC
T ss_pred CCcccCCCCCCEeC--CcCCCccCCHHHHHHHHHHHCCCCCCCCC
Confidence 57777777777777 67777777777777777777777777775
|
| >2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.8e-09 Score=81.14 Aligned_cols=45 Identities=27% Similarity=0.432 Sum_probs=36.4
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
+|+++|++++||.|+ .|++.|.++..|.+|+++|++++||.|+.|
T Consensus 2 ~H~~~H~~~~~~~C~--~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2eop_A 2 SSGSSGTGEKPHECR--ECGKSFSFNSQLIVHQRIHTGENPSGPSSG 46 (46)
T ss_dssp CCCCSCCCCCSCBCT--TTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred CCccccCCCCCeeCC--CCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 366778888888887 788888888888888888888888888877
|
| >2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.6e-09 Score=81.53 Aligned_cols=43 Identities=26% Similarity=0.394 Sum_probs=33.1
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2emp_A 2 SSGSSGTGVKPYMC--NECGKAFSVYSSLTTHQVIHTGEKPSGPS 44 (46)
T ss_dssp CCCSCSSCCCSEEC--SSSCCEESCHHHHHHHHHHHHCCSCCSCC
T ss_pred CcccccCCCcCeEC--CCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence 57777777777777 67777777777777777777777777775
|
| >2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=6.7e-10 Score=83.58 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=43.0
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
+|+++|++++||.|. .|++.|.+...|.+|+++|++++||.|+.|
T Consensus 2 ~H~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2emp_A 2 SSGSSGTGVKPYMCN--ECGKAFSVYSSLTTHQVIHTGEKPSGPSSG 46 (46)
T ss_dssp CCCSCSSCCCSEECS--SSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred CcccccCCCcCeECC--CCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 478899999999998 899999999999999999999999999988
|
| >2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=2.1e-09 Score=80.73 Aligned_cols=45 Identities=24% Similarity=0.455 Sum_probs=38.2
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
+|+++|++++||.|+ .|++.|.+...|.+|+++|++++||.|+.|
T Consensus 2 ~H~~~H~~~~~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2eov_A 2 SSGSSGTGEKPYKCS--DCGKSFTWKSRLRIHQKCHTGERHSGPSSG 46 (46)
T ss_dssp CCCCCCSSCCSCBCS--SSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred CCCCCCCCCCCccCC--ccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence 367788888888887 788888888888888888888888888887
|
| >2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-09 Score=81.51 Aligned_cols=44 Identities=32% Similarity=0.428 Sum_probs=33.3
Q ss_pred HHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 740 H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
|+++|++++||.|+ .|++.|.+...|.+|+++|++++||.|+.|
T Consensus 3 H~~~H~~~~~~~C~--~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2en8_A 3 SGSSGSGEKSHTCD--ECGKNFCYISALRIHQRVHMGEKCSGPSSG 46 (46)
T ss_dssp CCCCCCCCSSEECT--TTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred ccccCCCCCCeECC--CcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 56677777777776 777777777777777777777777777776
|
| >2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.8e-09 Score=81.19 Aligned_cols=44 Identities=30% Similarity=0.616 Sum_probs=35.6
Q ss_pred HHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 740 H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
|+++|++++||.|+ .|++.|.++..|.+|+++|++++||.|+.|
T Consensus 3 H~~~H~~~~~~~C~--~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2eoe_A 3 SGSSGTGEKPYKCN--ECGKVFTQNSHLANHQRIHTGVKPSGPSSG 46 (46)
T ss_dssp CSSCCCCCCSSEET--TTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred CCCCCCCCCCeECC--CcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 66778888888887 788888888888888888888888888877
|
| >2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-09 Score=89.45 Aligned_cols=59 Identities=17% Similarity=0.342 Sum_probs=32.3
Q ss_pred CCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCC
Q psy11859 715 NLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778 (851)
Q Consensus 715 ~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gek 778 (851)
.+++||+| +.|++.|. .+.|..|+++ ++++||.|+ ..|++.|..++.|..|+++|...+
T Consensus 6 C~~~~~~C--~~C~k~f~-~~~L~~H~~~-~~~~p~~C~-~~C~k~f~~~~~L~~H~~~hc~~~ 64 (66)
T 2eod_A 6 SGKRTQPC--TYCTKEFV-FDTIQSHQYQ-CPRLPVACP-NQCGVGTVAREDLPGHLKDSCNTA 64 (66)
T ss_dssp CCCCEEEC--SSSCCEEE-HHHHHHHHHH-CSSSEEECT-TCCSCCEEETTTHHHHHHTTSSSC
T ss_pred CCCCCeec--cccCCccC-HHHHHHHHHH-cCCcCccCC-cccCcccccHHHHHHHHHhhcccC
Confidence 34555555 45555555 5555555555 555555553 135555555555555555555443
|
| >2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.7e-09 Score=81.33 Aligned_cols=44 Identities=34% Similarity=0.570 Sum_probs=33.9
Q ss_pred HHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 740 H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
|+++|++++||.|+ .|++.|.++..|.+|+++|++++||.|+.|
T Consensus 3 H~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2ene_A 3 SGSSGTGEKPYKCN--ECGKVFRHNSYLSRHQRIHTGEKPSGPSSG 46 (46)
T ss_dssp CCSSCCCSSSEECS--SSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred cccCCCCCCCeECC--CCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence 56677777777776 777777777777777777777777777776
|
| >2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=8.6e-10 Score=82.97 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=32.4
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||+|.
T Consensus 2 ~H~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2yso_A 2 SSGSSGSREKSHQC--RECGEIFFQYVSLIEHQVLHMGQKNSGPS 44 (46)
T ss_dssp CCSCCSSCCCCEEC--TTTCCEESSHHHHHHHHHHHSCCSCCCTT
T ss_pred CcccccCCCCCEEc--cccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence 46777777777777 67777777777777777777777777775
|
| >2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=1e-09 Score=82.61 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=30.1
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|.
T Consensus 2 ~h~~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2el6_A 2 SSGSSGAGVNPYKC--SQCEKSFSGKLRLLVHQRMHTREKPSGPS 44 (46)
T ss_dssp CSCCSSCCCCSEEC--SSSSCEESSHHHHHHHHGGGCCSSCCSCC
T ss_pred CCCCCCCCCCCeEC--CCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence 46667777777777 66777777777777777777777777765
|
| >2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=7.8e-10 Score=83.21 Aligned_cols=43 Identities=23% Similarity=0.369 Sum_probs=30.2
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2ysp_A 2 SSGSSGTGEKPYKC--EKCGKGYNSKFNLDMHQKVHTGERPSGPS 44 (46)
T ss_dssp CCCCCCSSCCSEEE--TTTTEEESCHHHHHHHHTTSCSCCSSCCS
T ss_pred CCCcCCCCCCCeEC--CCCCCccCCHHHHHHHHHhhCCCCCCCCC
Confidence 46667777777777 66777777777777777777777777765
|
| >2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.7e-09 Score=81.29 Aligned_cols=45 Identities=31% Similarity=0.553 Sum_probs=36.7
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
+|+++|++++||.|. .|++.|.++..|.+|+++|++++||.|+.|
T Consensus 2 ~H~~~H~~~~~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c 46 (46)
T 2ytk_A 2 SSGSSGSGEKPYKCN--ECGKVFTQNSHLTNHWRIHTGEKPSGPSSG 46 (46)
T ss_dssp CCCCCSSSSCSEECS--SSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred CCcccCCCCCCEeCC--cCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence 366778888888887 788888888888888888888888888877
|
| >2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=6.6e-10 Score=83.61 Aligned_cols=43 Identities=23% Similarity=0.351 Sum_probs=33.9
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2emh_A 2 SSGSSGTGERPYIC--TVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44 (46)
T ss_dssp CCCCSCSCCCSEEC--TTTCCEESSHHHHHHHHHHHHCSSCSSSC
T ss_pred CCCCCCCCCCCcCC--CCCCchhCCHHHHHHHHHhcCCCCCCCCC
Confidence 57777888888888 67888888888888888888888888776
|
| >2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-09 Score=81.39 Aligned_cols=45 Identities=27% Similarity=0.459 Sum_probs=36.5
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
+|+++|++++||.|. .|++.|.+...|.+|+++|++++||.|+.|
T Consensus 2 ~H~~~H~~~k~~~C~--~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c 46 (46)
T 2emh_A 2 SSGSSGTGERPYICT--VCGKAFTDRSNLIKHQKIHTGEKPSGPSSG 46 (46)
T ss_dssp CCCCSCSCCCSEECT--TTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred CCCCCCCCCCCcCCC--CCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence 366778888888887 788888888888888888888888888876
|
| >2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.1e-09 Score=80.85 Aligned_cols=44 Identities=36% Similarity=0.519 Sum_probs=36.9
Q ss_pred HHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 740 H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
|+++|++++||.|. .|++.|.+...|.+|+++|++++||.|+.|
T Consensus 3 H~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2epz_A 3 SGSSGTGEKPFDCI--DCGKAFSDHIGLNQHRRIHTGEKPSGPSSG 46 (46)
T ss_dssp CCSSCCCCCSBCCT--TTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred CCCCcCCCCCeECC--CCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 67788888888887 788888888888888888888888888877
|
| >2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.8e-09 Score=81.19 Aligned_cols=45 Identities=33% Similarity=0.603 Sum_probs=36.8
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
+|+++|++++||.|. .|++.|.++..|.+|+++|++++||.|+.|
T Consensus 2 ~H~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2ytd_A 2 SSGSSGSGEKPYKCS--ECGKAFHRHTHLNEHRRIHTGYRPSGPSSG 46 (46)
T ss_dssp CCCCCSCCCCSEECS--SSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred CCccccCCCcCeECC--CCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence 366778888888887 788888888888888888888888888877
|
| >2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=6.8e-10 Score=83.61 Aligned_cols=45 Identities=29% Similarity=0.487 Sum_probs=43.0
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
+|+++|++++||.|+ .|++.|.+.+.|..|+++|++++||.|+.|
T Consensus 2 ~H~~~H~~~k~~~C~--~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2eoo_A 2 SSGSSGSGERPYGCN--ECGKNFGRHSHLIEHLKRHFREKSSGPSSG 46 (46)
T ss_dssp CCCCCCSCCCCEECS--SSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred CCCCCCCCCCCEEcc--ccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 478899999999998 899999999999999999999999999988
|
| >2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-09 Score=81.09 Aligned_cols=45 Identities=31% Similarity=0.538 Sum_probs=36.2
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
.|+++|++++||.|+ .|++.|.++..|.+|+++|++++||.|+.|
T Consensus 2 ~H~~~H~~~k~~~C~--~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2emy_A 2 SSGSSGTGENPYECH--ECGKAFSRKYQLISHQRTHAGEKPSGPSSG 46 (46)
T ss_dssp CCCCCCCSSCCEECS--SSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred CCCCCCCCCcCcCCC--CCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence 366778888888887 788888888888888888888888888877
|
| >2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.2e-09 Score=80.70 Aligned_cols=44 Identities=30% Similarity=0.450 Sum_probs=36.7
Q ss_pred HHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 740 H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
|+++|++++||.|. .|++.|.+...|.+|+++|++++||.|++|
T Consensus 3 h~~~h~~~k~~~C~--~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2elz_A 3 SGSSGSVEKPYKCE--DCGKGYNRRLNLDMHQRVHMGEKTSGPSSG 46 (46)
T ss_dssp CCSCCCCCSSCBCS--SSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred CCCCCCCCCCeeCc--ccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence 66778888888887 788888888888888888888888888877
|
| >2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-09 Score=80.84 Aligned_cols=45 Identities=33% Similarity=0.625 Sum_probs=37.4
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
.|+++|++++||.|+ .|++.|.+...|.+|+++|++++||.|+.|
T Consensus 2 ~H~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2ytr_A 2 SSGSSGTGEKPYKCN--ECGKAFSQTSKLARHQRIHTGEKPSGPSSG 46 (46)
T ss_dssp CSSCCCSSCCTTCCT--TTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred CCCcCCCCCcCcCCC--CCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence 367788888888887 788888888888888888888888888877
|
| >2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=8e-10 Score=83.24 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=33.1
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~h~~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2ytm_A 2 SSGSSGTGEKPYKC--MECGKAFGDNSSCTQHQRLHTGQRPSGPS 44 (46)
T ss_dssp CSCCCCSSCCSSSB--TTTTBCCSSHHHHHHHHHHHHSCCCCCCC
T ss_pred CCCcCCCCCCCcCC--CCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence 46777777777777 67777777777777777777777777776
|
| >2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.8e-09 Score=81.19 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=37.6
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
.|+++|++++||.|+ .|++.|.+...|.+|+++|++++||.|+.|
T Consensus 2 ~H~~~H~~~k~~~C~--~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2epw_A 2 SSGSSGTGEKPCKCT--ECGKAFCWKSQLIMHQRTHVDDKHSGPSSG 46 (46)
T ss_dssp CCCCCCCCCCSEECS--SSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred cCcccCCCCCCeeCC--CCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 367788888888887 788888888888888888888888888877
|
| >2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-09 Score=81.10 Aligned_cols=44 Identities=32% Similarity=0.551 Sum_probs=35.9
Q ss_pred HHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 740 H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
|+++|++++||.|+ .|++.|.++..|.+|+++|++++||.|+.|
T Consensus 3 H~~~H~~~k~~~C~--~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c 46 (46)
T 2eq0_A 3 SGSSGTGEKPYKCH--ECGKVFRRNSHLARHQLIHTGEKPSGPSSG 46 (46)
T ss_dssp CCCCTTCCCCEECT--TTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred CCcCCCCCCCeECC--CCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 66778888888887 788888888888888888888888888877
|
| >2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-09 Score=89.92 Aligned_cols=65 Identities=51% Similarity=0.962 Sum_probs=48.9
Q ss_pred cccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhc
Q psy11859 710 QKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSH 774 (851)
Q Consensus 710 h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H 774 (851)
....++..++|.|.++.|++.|.....|..|+++|++++||.|....|++.|.+...|.+|+++|
T Consensus 8 ~~~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H 72 (72)
T 2epa_A 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72 (72)
T ss_dssp CCCCCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred CCCCccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence 34556677888884333888888888888888888888888884114888888888888888776
|
| >2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-09 Score=82.43 Aligned_cols=43 Identities=23% Similarity=0.404 Sum_probs=31.7
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
+|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2ep3_A 2 SSGSSGTGEKPYRC--AECGKAFTDRSNLFTHQKIHTGEKPSGPS 44 (46)
T ss_dssp CCCSSSSCCCSEEC--SSSCCEESSHHHHHHHHTTTTTSCCCCTT
T ss_pred CCCCCCCCCCCeEC--CCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence 56777777777777 66777777777777777777777777775
|
| >2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.3e-09 Score=80.65 Aligned_cols=44 Identities=30% Similarity=0.450 Sum_probs=36.8
Q ss_pred HHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 740 H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
|+++|++++||.|+ .|++.|.+...|.+|+++|++++||.|+.|
T Consensus 3 H~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2ytq_A 3 SGSSGAGEKPYGCS--ECGKAFSSKSYLIIHMRTHSGEKPSGPSSG 46 (46)
T ss_dssp CSSCSSCCCSCBCS--SSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred CCcCcCCCCCcCCC--ccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence 66778888888887 788888888888888888888888888877
|
| >2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.8e-09 Score=81.24 Aligned_cols=45 Identities=27% Similarity=0.440 Sum_probs=33.2
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
+|+++|++++||.|+ .|++.|.+...|.+|+++|++++||.|+.|
T Consensus 2 ~H~~~H~~~~~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2em5_A 2 SSGSSGSSTKSHQCH--ECGRGFTLKSHLNQHQRIHTGEKPSGPSSG 46 (46)
T ss_dssp CCCCCCCCSCSEECS--SSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred CCcCCCCCCCCeECC--cCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 356677777777776 677777777777777777777777777776
|
| >2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=2.1e-09 Score=80.74 Aligned_cols=45 Identities=38% Similarity=0.533 Sum_probs=37.2
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
+|+++|++++||.|+ .|++.|.+...|.+|+++|++++||.|+.|
T Consensus 2 ~H~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2eme_A 2 SSGSSGSGEKPYVCD--YCGKAFGLSAELVRHQRIHTGEKPSGPSSG 46 (46)
T ss_dssp CCCCTTCCCCSEECS--SSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred CCCCCCCCCCCeECC--CCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence 467788888888887 788888888888888888888888888877
|
| >2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=8.3e-10 Score=83.05 Aligned_cols=43 Identities=28% Similarity=0.440 Sum_probs=32.5
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~h~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2en6_A 2 SSGSSGSGEKPYGC--NECGKTFSQKSILSAHQRTHTGEKPSGPS 44 (46)
T ss_dssp CCSCCCCSSCCEEE--TTTTEEESSHHHHHHHHHHHSSCCCSSSC
T ss_pred CCCCccCCCcCeEC--CCCCcccCchHHHHHHHHHcCCCCCCCCC
Confidence 46777777777777 67777777777777777777777777775
|
| >2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.1e-09 Score=80.82 Aligned_cols=44 Identities=25% Similarity=0.269 Sum_probs=36.7
Q ss_pred HHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 740 H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
|+++|++++||.|+ .|++.|.+...|.+|+++|++++||.|+.|
T Consensus 3 H~~~H~~~~~~~C~--~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2yso_A 3 SGSSGSREKSHQCR--ECGEIFFQYVSLIEHQVLHMGQKNSGPSSG 46 (46)
T ss_dssp CSCCSSCCCCEECT--TTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred cccccCCCCCEEcc--ccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 66778888888887 788888888888888888888888888877
|
| >2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.7e-09 Score=81.37 Aligned_cols=45 Identities=33% Similarity=0.616 Sum_probs=37.1
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
.|+++|++++||.|+ .|++.|.++..|.+|+++|++++||.|+.|
T Consensus 2 ~H~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2yu8_A 2 SSGSSGTGEKPYKCN--ECGKVFTQNSHLARHRRVHTGGKPSGPSSG 46 (46)
T ss_dssp CCCCCCCCCSSEECS--SSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred CcCcCCCCCCCeECC--cCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence 366778888888887 788888888888888888888888888877
|
| >2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.3e-09 Score=80.58 Aligned_cols=44 Identities=27% Similarity=0.454 Sum_probs=35.1
Q ss_pred HHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 740 H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
|+++|++++||.|+ .|++.|.+...|.+|+++|++++||.|+.|
T Consensus 3 H~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2em7_A 3 SGSSGTGEKPYKCE--ECGKGFICRRDLYTHHMVHTGEKPSGPSSG 46 (46)
T ss_dssp CCCSSSCCCSEECS--SSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred CCCCCCCCcCccCC--CccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 56777888888887 788888888888888888888888888776
|
| >2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-09 Score=81.07 Aligned_cols=45 Identities=33% Similarity=0.554 Sum_probs=35.2
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
+|+++|++++||.|. .|++.|.+...|.+|+++|++++||.|+.|
T Consensus 2 ~h~~~H~~~~~~~C~--~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2en6_A 2 SSGSSGSGEKPYGCN--ECGKTFSQKSILSAHQRTHTGEKPSGPSSG 46 (46)
T ss_dssp CCSCCCCSSCCEEET--TTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred CCCCccCCCcCeECC--CCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence 356777788888887 788888888888888888888888888776
|
| >2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2.3e-09 Score=80.58 Aligned_cols=44 Identities=27% Similarity=0.489 Sum_probs=33.8
Q ss_pred HHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 740 H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
|+++|++++||.|. .|++.|.+...|.+|+++|++++||.|++|
T Consensus 3 H~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2em9_A 3 SGSSGTGEKPYNCK--ECGKSFRWASCLLKHQRVHSGEKPSGPSSG 46 (46)
T ss_dssp SCCSCCCCCSEECS--SSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred CCCCCCCCcCeECC--ccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence 56677777777776 777777777777777777777777777776
|
| >2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=2e-09 Score=80.91 Aligned_cols=45 Identities=24% Similarity=0.490 Sum_probs=33.9
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
+|+++|++++||.|. .|++.|.++..|.+|+++|++++||.|++|
T Consensus 2 ~H~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~ 46 (46)
T 2ep3_A 2 SSGSSGTGEKPYRCA--ECGKAFTDRSNLFTHQKIHTGEKPSGPSSG 46 (46)
T ss_dssp CCCSSSSCCCSEECS--SSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred CCCCCCCCCCCeECC--CCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 366677777777776 777777777777777777777777777765
|
| >2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-09 Score=81.05 Aligned_cols=45 Identities=33% Similarity=0.615 Sum_probs=34.3
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
.|+++|++++||.|+ .|++.|.+...|.+|+++|++++||.|+.|
T Consensus 2 ~H~~~H~~~~~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2en1_A 2 SSGSSGSGEKPFKCE--ECGKRFTQNSQLHSHQRVHTGEKPSGPSSG 46 (46)
T ss_dssp CSTTCCCCCCSEEET--TTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred CcccCCCCCCCeeCC--CCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 366777777777776 777777777777777777777777777776
|
| >2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.1e-09 Score=88.21 Aligned_cols=65 Identities=14% Similarity=0.093 Sum_probs=56.3
Q ss_pred CCCceeeeeccceeecC--CccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhh
Q psy11859 680 RSNRFWHYFFVIFTQIL--PAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRH 744 (851)
Q Consensus 680 ~~h~~~h~~~~~~~c~~--c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H 744 (851)
......+...++|.|.. |++.|.....|..|+++|++++||+|.++.|++.|.....|..|+++|
T Consensus 6 ~~~~~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H 72 (72)
T 2epa_A 6 SGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72 (72)
T ss_dssp CCCCCCCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred CCCCCCccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence 34455567788999998 999999999999999999999999994335999999999999999876
|
| >2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.6e-09 Score=80.33 Aligned_cols=44 Identities=27% Similarity=0.363 Sum_probs=35.8
Q ss_pred HHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 740 H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
|+++|++++||.|+ .|++.|.+...|.+|+++|++++||.|+.|
T Consensus 3 h~~~h~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2el6_A 3 SGSSGAGVNPYKCS--QCEKSFSGKLRLLVHQRMHTREKPSGPSSG 46 (46)
T ss_dssp SCCSSCCCCSEECS--SSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred CCCCCCCCCCeECC--CCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 56778888888887 788888888888888888888888888877
|
| >2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.3e-09 Score=80.57 Aligned_cols=44 Identities=34% Similarity=0.528 Sum_probs=36.1
Q ss_pred HHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 740 H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
|+++|++++||.|. .|++.|.+...|.+|+++|++++||.|+.|
T Consensus 3 h~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2enc_A 3 SGSSGSGEKPFKCE--ECGKGFYTNSQCYSHQRSHSGEKPSGPSSG 46 (46)
T ss_dssp CSSCCCCCCSEECS--SSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred CCCCCCCCCCcCCC--CCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence 56778888888887 788888888888888888888888888877
|
| >2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.6e-09 Score=81.75 Aligned_cols=43 Identities=23% Similarity=0.389 Sum_probs=29.3
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHh-hhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLR-RHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~-~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|++ +|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~ 45 (47)
T 2epx_A 2 SSGSSGTGKKPYEC--IECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45 (47)
T ss_dssp CCCCCCCCCCSBCC--SSSCCCBSSHHHHHHHHTTTTTTSCSSSCC
T ss_pred ccccccCCCCCEEC--CccCchhCChHHHHHHhHhhcCCCCCCCCC
Confidence 46666777777777 567777777777777766 66666666665
|
| >2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=2.8e-09 Score=80.22 Aligned_cols=44 Identities=25% Similarity=0.490 Sum_probs=38.5
Q ss_pred HHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 740 H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
|+++|++++||.|+ .|++.|.+...|.+|+++|++++||.|+.|
T Consensus 3 h~~~h~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2ytm_A 3 SGSSGTGEKPYKCM--ECGKAFGDNSSCTQHQRLHTGQRPSGPSSG 46 (46)
T ss_dssp SCCCCSSCCSSSBT--TTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred CCcCCCCCCCcCCC--CCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 67788888899997 899999999999999988998899998887
|
| >2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-09 Score=82.61 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=33.1
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~h~~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2em8_A 2 SSGSSGSGEKPYKC--VECGKGYKRRLDLDFHQRVHTGEKLSGPS 44 (46)
T ss_dssp CCCCCCCSCCSEEC--SSSCCEESSHHHHHHHHHHHHCCCCCCSC
T ss_pred CCCCCCCCCCCeEC--cccCchhCCHHHHHHHHHHHcCCCCCCCC
Confidence 46777777777777 67777777777777777777777777776
|
| >2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A | Back alignment and structure |
|---|
Probab=98.78 E-value=3.2e-09 Score=78.02 Aligned_cols=41 Identities=24% Similarity=0.444 Sum_probs=30.0
Q ss_pred cccccCCcccccccCCccCccccChhhHHHHHhhhcCCCcccc
Q psy11859 710 QKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752 (851)
Q Consensus 710 h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C 752 (851)
|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|
T Consensus 1 H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C 41 (42)
T 2el5_A 1 GSSGSSGENPYEC--SECGKAFNRKDQLISHQRTHAGESGPSS 41 (42)
T ss_dssp CCSSSSSCCSEEC--SSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred CCCCCCCCCCccC--CCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence 5667777777777 6677777777777777777777777776
|
| >2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-09 Score=81.03 Aligned_cols=44 Identities=30% Similarity=0.548 Sum_probs=32.6
Q ss_pred HHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 740 H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
|+++|++++||.|+ .|++.|.++..|.+|+++|++++||.|++|
T Consensus 3 H~~~H~~~~~~~C~--~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2ytg_A 3 SGSSGTGEKPFKCG--ECGKSYNQRVHLTQHQRVHTGEKPSGPSSG 46 (46)
T ss_dssp CCCCCSSCCSEECT--TTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred CCCCCCCCCCeECC--CCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 56677777777776 677777777777777777777777777766
|
| >2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.6e-09 Score=80.32 Aligned_cols=44 Identities=23% Similarity=0.459 Sum_probs=31.5
Q ss_pred HHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 740 H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
|+++|++++||.|+ .|++.|.+...|.+|+++|++++||.|++|
T Consensus 3 H~~~h~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2ysp_A 3 SGSSGTGEKPYKCE--KCGKGYNSKFNLDMHQKVHTGERPSGPSSG 46 (46)
T ss_dssp CCCCCSSCCSEEET--TTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred CCcCCCCCCCeECC--CCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence 55667777777776 677777777777777777777777777766
|
| >1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=7.4e-10 Score=89.48 Aligned_cols=55 Identities=13% Similarity=0.332 Sum_probs=35.5
Q ss_pred hhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHH
Q psy11859 707 LIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELS 768 (851)
Q Consensus 707 l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~ 768 (851)
|..|+++|++++||+| +.||++|.+.+.|. ++|++++||.|. .|++.|....++.
T Consensus 2 L~~h~~~H~~~k~~~C--~~C~k~F~~~~~l~---~~H~~~k~~~C~--~C~k~f~~~~~~~ 56 (62)
T 1vd4_A 2 IETDERDSTNRASFKC--PVCSSTFTDLEANQ---LFDPMTGTFRCT--FCHTEVEEDESAM 56 (62)
T ss_dssp CCCCSSSCCSSSEEEC--SSSCCEEEHHHHHH---HEETTTTEEBCS--SSCCBCEECTTCS
T ss_pred hhhHHHHcCCCCCccC--CCCCchhccHHHhH---hhcCCCCCEECC--CCCCccccCcccc
Confidence 4566667777777777 66777776666554 566666666666 6666666555443
|
| >2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=3.9e-09 Score=77.50 Aligned_cols=41 Identities=15% Similarity=0.307 Sum_probs=31.5
Q ss_pred cccccCCcccccccCCccCccccChhhHHHHHhhhcCCCcccc
Q psy11859 710 QKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752 (851)
Q Consensus 710 h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C 752 (851)
|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|
T Consensus 1 H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C 41 (42)
T 2yte_A 1 GSSGSSGEKPYSC--AECKETFSDNNRLVQHQKMHTVKSGPSS 41 (42)
T ss_dssp CCSSSCSCCSCBC--TTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred CCcCcCCCCCeEC--CCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence 5677777777777 6777777777777777777777777776
|
| >2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.3e-09 Score=86.59 Aligned_cols=60 Identities=10% Similarity=-0.046 Sum_probs=54.3
Q ss_pred eeeccceeecCCccccchhhhhhhcccccCCcccccccCC-ccCccccChhhHHHHHhhhcCCCc
Q psy11859 686 HYFFVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYP-ECLKFYAKMSHLKAHLRRHSGERS 749 (851)
Q Consensus 686 h~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~-~Cgk~F~~~~~L~~H~~~H~gekp 749 (851)
+-+.+||.|..|++.|. ...|..|+++ ++++||+| + .||++|...+.|..|+++|...+|
T Consensus 5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C--~~~C~k~f~~~~~L~~H~~~hc~~~~ 65 (66)
T 2eod_A 5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVAC--PNQCGVGTVAREDLPGHLKDSCNTAL 65 (66)
T ss_dssp CCCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEEC--TTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred cCCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccC--CcccCcccccHHHHHHHHHhhcccCc
Confidence 34678999999999999 9999999988 99999999 8 899999999999999999987665
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=98.77 E-value=3.6e-09 Score=115.41 Aligned_cols=124 Identities=14% Similarity=0.037 Sum_probs=81.7
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCC----CccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCP----DIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~----~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
.++|+||||+||||++++..|+..+. .+..|.++++.... ..+++... . ..|... .. .+ .+|
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~--~~~~~~g~----~-~dl~~~---~~-~~---~~~ 70 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEK--AQKALQGV----M-MEIDDC---AF-PL---LAG 70 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHH--HHHHHHHH----H-HHHHTT---TC-TT---EEE
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCcc--ccccchhh----H-HHHhhh---cc-cc---cCc
Confidence 46899999999999999999998651 12378888775100 01111100 0 001100 00 11 245
Q ss_pred CCCCcCCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCce-EEEEeee
Q psy11859 294 ILQANLGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLV-AFIHFST 361 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~-~fV~vST 361 (851)
+.... ++...++++|+|||+|+...- ..+..+.+..|+.+++++++++.+..+.+ +||++|.
T Consensus 71 i~~~~------~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN 134 (329)
T 1b8p_A 71 MTAHA------DPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN 134 (329)
T ss_dssp EEEES------SHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred EEEec------CcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence 55444 567778999999999997654 33456789999999999999999873234 7888876
|
| >2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=3.3e-09 Score=79.77 Aligned_cols=44 Identities=30% Similarity=0.417 Sum_probs=36.2
Q ss_pred HHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 740 H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
|+++|++++||.|+ .|++.|.+...|.+|+++|++++||.|+.|
T Consensus 3 h~~~h~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2em8_A 3 SGSSGSGEKPYKCV--ECGKGYKRRLDLDFHQRVHTGEKLSGPSSG 46 (46)
T ss_dssp CCCCCCSCCSEECS--SSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred CCCCCCCCCCeECc--ccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 56778888888887 788888888888888888888888888877
|
| >2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=3.6e-09 Score=82.67 Aligned_cols=47 Identities=26% Similarity=0.473 Sum_probs=25.6
Q ss_pred ccCCcccccccCCccCccccChhhHHHHHh-hhcCCCccccCccccCccccC
Q psy11859 713 FENLVRTFQCTYPECLKFYAKMSHLKAHLR-RHSGERSFKCDWQDCKWQFSR 763 (851)
Q Consensus 713 ~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~-~H~gekp~~C~~~~C~k~F~~ 763 (851)
.|++++||+| +.|++.|.+...|..|++ +|++++||.|. .|++.|.+
T Consensus 6 ~~~~~k~~~C--~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~--~C~k~F~~ 53 (54)
T 2eps_A 6 SGSVGKPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKCQ--VWVSGPSS 53 (54)
T ss_dssp CCCSSCCEEC--SSSCCEESSHHHHHHHHHHTSCCCCCCCSS--SSCCSSCC
T ss_pred CCCCCCCeEC--CCCCcccCCHHHHHHHHHHhcCCCCCccCC--CCCCCCCC
Confidence 4555555555 455555555555555554 55555555554 55555543
|
| >2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=4.2e-09 Score=79.43 Aligned_cols=44 Identities=27% Similarity=0.460 Sum_probs=36.0
Q ss_pred HHhhhcCCCccccCccccCccccCchhHHHhhh-hcCCCCCccCCCC
Q psy11859 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRR-SHFGIKPYPCTLC 785 (851)
Q Consensus 740 H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r-~H~gekp~~C~~C 785 (851)
|+++|++++||.|. .|++.|.+...|.+|++ +|++++||.|+.|
T Consensus 3 H~~~H~~~k~~~C~--~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C 47 (47)
T 2epx_A 3 SGSSGTGKKPYECI--ECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG 47 (47)
T ss_dssp CCCCCCCCCSBCCS--SSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred cccccCCCCCEECC--ccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence 66778888888887 78888888888888888 8888888888877
|
| >2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.9e-09 Score=81.09 Aligned_cols=43 Identities=30% Similarity=0.501 Sum_probs=34.0
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2em2_A 2 SSGSSGSGEKPFKC--KECGKAFRQNIHLASHLRIHTGEKPSGPS 44 (46)
T ss_dssp CCCCSCCCCCSEEC--SSSCCEESSHHHHHHHHHHHCCCCSSCSS
T ss_pred CCCCCCCCCCCEEC--CcCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence 47778888888888 67888888888888888888888888775
|
| >2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=4.3e-09 Score=79.13 Aligned_cols=44 Identities=34% Similarity=0.511 Sum_probs=34.9
Q ss_pred HHhhhcCCCccccCccccCccccCchhHHHhhhhcCCCCCccCCCC
Q psy11859 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785 (851)
Q Consensus 740 H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~C 785 (851)
|+++|++++||.|. .|++.|.+...|.+|+++|++++||.|+.|
T Consensus 3 H~~~H~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~ 46 (46)
T 2em2_A 3 SGSSGSGEKPFKCK--ECGKAFRQNIHLASHLRIHTGEKPSGPSSG 46 (46)
T ss_dssp CCCSCCCCCSEECS--SSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred CCCCCCCCCCEECC--cCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 66778888888887 788888888888888888888888888765
|
| >2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=4.6e-09 Score=78.92 Aligned_cols=43 Identities=28% Similarity=0.441 Sum_probs=34.4
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2eq2_A 2 SSGSSGTGGKPYQC--NECGKAFSQTSKLARHQRVHTGEKPSGPS 44 (46)
T ss_dssp CCCCSSSSSCSSSC--CSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred CcccccCCCCCeEC--CCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence 57778888888888 67888888888888888888888888875
|
| >2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=4.4e-09 Score=79.03 Aligned_cols=43 Identities=33% Similarity=0.512 Sum_probs=33.7
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
+|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2yth_A 2 SSGSSGSGEKPFQC--EECGKRFTQNSHLHSHQRVHTGEKPSGPS 44 (46)
T ss_dssp CCCSCCCCSSSBCC--SSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred CcccCCCCCcCCCC--CCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence 57777888888888 67888888888888888888888888774
|
| >2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=4.5e-09 Score=78.96 Aligned_cols=43 Identities=26% Similarity=0.424 Sum_probs=34.2
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2enf_A 2 SSGSSGTGEKPYKC--NECGKVFTQNSHLVRHRGIHTGEKPSGPS 44 (46)
T ss_dssp CCCCCCCCCCSCBC--SSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred CCCcCCCCCcCeEC--CCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence 57778888888888 67888888888888888888888888775
|
| >2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=3.9e-09 Score=79.33 Aligned_cols=43 Identities=30% Similarity=0.455 Sum_probs=34.1
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|+
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2ytp_A 2 SSGSSGTGERHYEC--SECGKAFARKSTLIMHQRIHTGEKPSGPS 44 (46)
T ss_dssp CCCCSSCCCCCEEC--SSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred CcccCcCCCCCeEC--CcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence 57778888888888 67888888888888888888888888774
|
| >2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=4.5e-09 Score=78.03 Aligned_cols=42 Identities=26% Similarity=0.405 Sum_probs=32.9
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCCCcccc
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C 752 (851)
.|+++|++++||+| +.|++.|.+.+.|..|+++|++++||.|
T Consensus 2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C 43 (44)
T 2en7_A 2 SSGSSGTGMKPYVC--NECGKAFRSKSYLIIHTRTHTGESGPSS 43 (44)
T ss_dssp CSCCCSSSSSSSCC--TTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred CCCcCCCCCcCeEC--CCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence 57777888888888 6788888888888888888877777777
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 851 | ||||
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 3e-10 | |
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 6e-10 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 8e-10 | |
| d2dlka2 | 36 | g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 | 9e-10 | |
| d2dlka2 | 36 | g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 | 6e-09 | |
| d1ubdc4 | 28 | g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger | 7e-08 | |
| d1ubdc4 | 28 | g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger | 3e-06 | |
| d1zfda_ | 32 | g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye | 2e-07 | |
| d1zfda_ | 32 | g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye | 6e-05 | |
| d2csha1 | 53 | g.37.1.1 (A:8-60) Zinc finger protein 297b {Human | 2e-07 | |
| d2csha1 | 53 | g.37.1.1 (A:8-60) Zinc finger protein 297b {Human | 0.001 | |
| d2cota2 | 38 | g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont | 2e-07 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 3e-07 | |
| d1p7aa_ | 37 | g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse ( | 6e-07 | |
| d1ncsa_ | 47 | g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye | 9e-07 | |
| d1ncsa_ | 47 | g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye | 0.002 | |
| d1sp2a_ | 31 | g.37.1.1 (A:) Transcription factor sp1 {Human (Hom | 1e-06 | |
| d1sp2a_ | 31 | g.37.1.1 (A:) Transcription factor sp1 {Human (Hom | 5e-06 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 2e-06 | |
| d2epsa1 | 39 | g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [ | 2e-06 | |
| d2epsa1 | 39 | g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [ | 5e-06 | |
| d1a1ia1 | 29 | g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) | 3e-06 | |
| d1a1ia1 | 29 | g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) | 9e-05 | |
| d1x6ha2 | 36 | g.37.1.1 (A:8-43) Transcriptional repressor CTCF { | 3e-06 | |
| d1x6ea1 | 33 | g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H | 3e-06 | |
| d1x6ea1 | 33 | g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H | 0.002 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 5e-06 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 8e-06 | |
| d2glia3 | 30 | g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo | 9e-06 | |
| d2glia3 | 30 | g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo | 2e-05 | |
| d2ct1a2 | 36 | g.37.1.1 (A:8-43) Transcriptional repressor CTCF { | 4e-05 | |
| d1ubdc3 | 30 | g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger | 7e-05 | |
| d1ubdc3 | 30 | g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger | 1e-04 | |
| d1srka_ | 35 | g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M | 1e-04 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 2e-04 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 2e-04 | |
| d1tf3a1 | 31 | g.37.1.1 (A:1-40) Transcription factor IIIA, TFIII | 5e-04 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 5e-04 | |
| d2adra1 | 29 | g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac | 7e-04 | |
| d2adra1 | 29 | g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac | 0.002 | |
| d1wmaa1 | 275 | c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydrox | 8e-04 | |
| d1a1ia2 | 28 | g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) | 8e-04 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 9e-04 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 0.001 | |
| d1sp1a_ | 29 | g.37.1.1 (A:) Transcription factor sp1 {Human (Hom | 0.002 | |
| d1sp1a_ | 29 | g.37.1.1 (A:) Transcription factor sp1 {Human (Hom | 0.004 | |
| d2bkaa1 | 232 | c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H | 0.003 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 0.003 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 0.003 |
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 60.5 bits (146), Expect = 3e-10
Identities = 45/240 (18%), Positives = 83/240 (34%), Gaps = 51/240 (21%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+L+TGG GF+G ++ ++++ D V + + LT L S +
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQD--TVVNIDK----LTYAGNLESLSDI---------- 46
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELK---ENVAANT 337
++ +R + DI + + + Q + V + AA ++ + + N
Sbjct: 47 -SESNRYNFEHADICDSAEITR----IFEQYQPDAVMHLAAESHVDRSITGPAAFIETNI 101
Query: 338 RGTQRLLDIALKM--------KKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAM 389
GT LL++A K K F H ST + D P
Sbjct: 102 VGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDL----------PHPDEVENSVT 151
Query: 390 EWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY--KTKLPVVIVRPSIVLPSFQEP 447
+ ET P + Y+ +K ++ LV + LP ++ S + P
Sbjct: 152 LPLFTET------TAYAPS-SPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFP 204
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.3 bits (143), Expect = 6e-10
Identities = 41/225 (18%), Positives = 78/225 (34%), Gaps = 59/225 (26%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+L+TGG GF+G L +KL+ ++ V + K + + FE
Sbjct: 4 ILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGR-----KRNVEHWIGHENFE------ 52
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAA---NT 337
+I D+++ L EV +++ A+ + + NT
Sbjct: 53 --------LINHDVVEP-----------LYIEVDQIYHLASPASPPNYMYNPIKTLKTNT 93
Query: 338 RGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETI 397
GT +L +A ++ + ST+ + D +V ++
Sbjct: 94 IGTLNMLGLAKRVG--ARLLLASTSEVYGDPEVHP-------------------QSEDYW 132
Query: 398 KQLTPKILGPHPNSYTFTKRLTETLVDEY--KTKLPVVIVRPSIV 440
+ P +GP Y KR+ ET+ Y + + V + R
Sbjct: 133 GHVNP--IGPR-ACYDEGKRVAETMCYAYMKQEGVEVRVARIFNT 174
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 59.0 bits (142), Expect = 8e-10
Identities = 35/226 (15%), Positives = 63/226 (27%), Gaps = 49/226 (21%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
L+TG TG G L E LL +V+ + R A + + ++
Sbjct: 4 ALITGVTGQDGSYLAEFLLEKGY---EVHGI----------KRRASSFNTERVDHIYQDP 50
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGT 340
+ H+ GD+ + + + +EV + + + + GT
Sbjct: 51 HTCNPKFHLHYGDLSDTSN-LTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGT 109
Query: 341 QRLLDIA--LKMKKLVAFIHFSTA--FCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDET 396
RLL+ L ++K F ST+ + + +E P SP
Sbjct: 110 LRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSP-------------- 155
Query: 397 IKQLTPKILGPHPNSYTFTKRLTETLVDEY--KTKLPVVIVRPSIV 440
Y K + Y +
Sbjct: 156 ---------------YAVAKLYAYWITVNYRESYGMYACNGILFNH 186
|
| >d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 692, ZNF692 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.4 bits (126), Expect = 9e-10
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 719 TFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDW 754
+F C P C K + HLK H++ HS R + C++
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36
|
| >d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 692, ZNF692 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (119), Expect = 6e-09
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 749 SFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
SF C C F+ L H + H + Y C
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
|
| >d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 28 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Ying-yang 1 (yy1, zinc finger domain) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (112), Expect = 7e-08
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 748 RSFKCDWQDCKWQFSRSDELSRHRRSH 774
R + C + C +F++S L H +H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTH 27
|
| >d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 28 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Ying-yang 1 (yy1, zinc finger domain) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (99), Expect = 3e-06
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHS 745
R + C + C K +A+ ++LK+H+ H+
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
|
| >d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 32 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: SWI5 zinc-finger domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.8 bits (109), Expect = 2e-07
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSH 774
+R + CD C F R+ +L RH++SH
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
|
| >d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 32 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: SWI5 zinc-finger domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.5 bits (90), Expect = 6e-05
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGE 747
R + C +P C K + + L H + H +
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
|
| >d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 297b species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (109), Expect = 2e-07
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSH 774
+ + C +C K + S H+ H G R + C C +F L H + H
Sbjct: 2 KLYPC---QCGKSFTHKSQRDRHMSMHLGLRPYGCG--VCGKKFKMKHHLVGHMKIH 53
|
| >d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 297b species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (82), Expect = 0.001
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVK 787
++ + C C F+ + RH H G++PY C +C K
Sbjct: 1 DKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGK 38
|
| >d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.5 bits (108), Expect = 2e-07
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFG 776
+ R +KCD C FS S +LS+HRR+H G
Sbjct: 3 SEWQQRERRRYKCDE--CGKSFSHSSDLSKHRRTHTG 37
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 51.0 bits (121), Expect = 3e-07
Identities = 54/264 (20%), Positives = 88/264 (33%), Gaps = 58/264 (21%)
Query: 221 VLVTGGTGFMGKVLLEKLL-RSCPDIGKVYILCRAKRGLT-PKARLAEFSKLPVFERLRK 278
+LVTGG GF+G + +LL + PD+ ++ +A LA P
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADP------- 55
Query: 279 ECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTR 338
RL + GDI A L ++ + + + + A N +
Sbjct: 56 -------RLRFVHGDIRDAGLLAREL---RGVDAIVHFAAESHVDRSIAGASVFTETNVQ 105
Query: 339 GTQRLLDIALK--MKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDET 396
GTQ LL A+ + ++V + + + D E P SP
Sbjct: 106 GTQTLLQCAVDAGVGRVV-HVSTNQVYGSIDSGSWTESSPLEPNSP-------------- 150
Query: 397 IKQLTPKILGPHPNSYTFTKRLTETLVDEY--KTKLPVVIVRPSIVLPSFQEP---VPGW 451
Y +K ++ + Y L V I R +Q P +P +
Sbjct: 151 ---------------YAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLF 195
Query: 452 VDS-LNGPVGVLVASGKGVVRSMI 474
V + L+G L G VR +
Sbjct: 196 VTNLLDGGTLPLYGDGAN-VREWV 218
|
| >d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Kruppel-like factor 3, Bklf species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.3 bits (105), Expect = 6e-07
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777
R +G + F+C C FSRSD L+ HR+ H +
Sbjct: 2 STRGSTGIKPFQCPD--CDRSFSRSDHLALHRKRHMLV 37
|
| >d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: SWI5 zinc-finger domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.2 bits (104), Expect = 9e-07
Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 735 SHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
+ + + +++F+C + C F R + H ++H +
Sbjct: 5 GSIDKY-VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
|
| >d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: SWI5 zinc-finger domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 34.9 bits (80), Expect = 0.002
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGER 748
+TF+C +P C K + + ++++H++ H +R
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
|
| >d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transcription factor sp1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (102), Expect = 1e-06
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGER 748
R F CT+ C K + + L+ H R H+GE+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
|
| >d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transcription factor sp1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (98), Expect = 5e-06
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 748 RSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
R F C W C +F+RSDEL RH+R+H G K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 48.4 bits (114), Expect = 2e-06
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 26/177 (14%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
VLVTGG+G++G +LL++ D+ + LC +KR S LPV ERL +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-----------SVLPVIERLGGK- 50
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELK---ENVAANT 337
+EGDI L + ++ + V + A + ++ E N
Sbjct: 51 -----HPTFVEGDIRNEALMTE----ILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNV 101
Query: 338 RGTQRLLDI--ALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWM 392
GT RL+ A +K + + P +E +P SP+ + M
Sbjct: 102 NGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQ 158
|
| >d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: PATZ1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (101), Expect = 2e-06
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 745 SGERSFKCDWQDCKWQFSRSDELSRH-RRSHFGIKPYPCTL 784
S + + C C FSR D L+ H ++ H +P+ C +
Sbjct: 1 SVGKPYICQ--SCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
|
| >d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: PATZ1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (99), Expect = 5e-06
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRR-HSGERSFKCD 753
+ + C C K +++ HL H+++ H+ ER KC
Sbjct: 4 KPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
|
| >d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 29 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: ZIF268 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.3 bits (100), Expect = 3e-06
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 748 RSFKCDWQDCKWQFSRSDELSRHRRSHFG 776
R + C + C +FSRS +L+RH R H G
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
|
| >d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 29 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: ZIF268 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.1 bits (89), Expect = 9e-05
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSG 746
R + C C + +++ + L H+R H+G
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
|
| >d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transcriptional repressor CTCF species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (100), Expect = 3e-06
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 742 RRHSGERSFKCDWQDCKWQFSRSDELSRHRRSH 774
R H+GE+ + C C F + L H + +
Sbjct: 1 RTHTGEKPYACS--HCDKTFRQKQLLDMHFKRY 31
|
| >d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 24 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (100), Expect = 3e-06
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 744 HSGERSFKCDWQDCKWQFSRSDELSRHRRSHFG 776
HSGE+ + C +C FSRS L +H+R H G
Sbjct: 2 HSGEKPYGCV--ECGKAFSRSSILVQHQRVHTG 32
|
| >d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 24 species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.1 bits (79), Expect = 0.002
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGE 747
+ + C EC K +++ S L H R H+GE
Sbjct: 6 KPYGCV--ECGKAFSRSSILVQHQRVHTGE 33
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.9 bits (110), Expect = 5e-06
Identities = 40/228 (17%), Positives = 63/228 (27%), Gaps = 52/228 (22%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
L+TG TG G L E LL +V+ + R R+ K P
Sbjct: 4 ALITGITGQDGSYLAEFLLEKGY---EVHGIVRRSSSFNTG-RIEHLYKNPQAH------ 53
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASL--KLEAELKENVAANTR 338
+ + GD+ + +K ++ + + GA S + +
Sbjct: 54 --IEGNMKLHYGDLTDSTCLVK---IINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGV 108
Query: 339 GTQRLLDIALK--MKKLVAFIHFSTA--FCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDD 394
GT RLLD + V F ST+ + + +E P SP
Sbjct: 109 GTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSP------------ 156
Query: 395 ETIKQLTPKILGPHPNSYTFTKRLTETLVDEY--KTKLPVVIVRPSIV 440
Y K +V + L V
Sbjct: 157 -----------------YGAAKLYAYWIVVNFREAYNLFAVNGILFNH 187
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 46.5 bits (109), Expect = 8e-06
Identities = 44/231 (19%), Positives = 78/231 (33%), Gaps = 39/231 (16%)
Query: 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRK 278
++++VTGG GF+G + + + PD+ V +L +L E +
Sbjct: 3 KNIIVTGGAGFIGSNFVHYVYNNHPDV-HVTVL----------DKLTYAGNKANLEAILG 51
Query: 279 ECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTR 338
+ R+ ++ GDI A L K + + + SL + + N
Sbjct: 52 D------RVELVVGDIADAELVDKLAAKADAIVHYAAESHNDNSLN---DPSPFIHTNFI 102
Query: 339 GTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIK 398
GT LL+ K + F H ST + D + E+ E
Sbjct: 103 GTYTLLE--AARKYDIRFHHVSTDEVYGDLPLREDLPG------------HGEGPGEKFT 148
Query: 399 QLTPKILGPHPNSYTFTKRLTETLVDEY--KTKLPVVIVRPSIVLPSFQEP 447
T P + Y+ TK ++ +V + + I S +Q
Sbjct: 149 AETN--YNPS-SPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHI 196
|
| >d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Five-finger GLI1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (96), Expect = 9e-06
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 748 RSFKCDWQDCKWQFSRSDELSRHRRSHFG 776
+ KC ++ C+ +SR + L H RSH G
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTG 29
|
| >d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Five-finger GLI1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (93), Expect = 2e-05
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGE 747
+ +CT+ C K Y+++ +LK HLR H+GE
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30
|
| >d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transcriptional repressor CTCF species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (92), Expect = 4e-05
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 742 RRHSGERSFKCDWQDCKWQFSRSDELSRHRRSH 774
R HSGE+ ++C C +F++S + H
Sbjct: 1 RTHSGEKPYECY--ICHARFTQSGTMKMHILQK 31
|
| >d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 30 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Ying-yang 1 (yy1, zinc finger domain) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (90), Expect = 7e-05
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 748 RSFKCDWQDCKWQFSRSDELSRHRRSHFG 776
+ F+C ++ C +FS L H R H G
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTG 29
|
| >d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 30 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Ying-yang 1 (yy1, zinc finger domain) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (88), Expect = 1e-04
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGE 747
+ FQCT+ C K ++ +L+ H+R H+G+
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
|
| >d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein ZFPM1 (FOG-1) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.2 bits (89), Expect = 1e-04
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 744 HSGERSFKCDWQDCKWQFSRSDELSRHRRSH 774
SG+R F C C F+ +RH + H
Sbjct: 2 SSGKRPFVCR--ICLSAFTTKANCARHLKVH 30
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 42.3 bits (97), Expect = 2e-04
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLR 277
G V+V GG G+ G L + ++ V L R + + +R+
Sbjct: 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLE-SLTPIASIHDRIS 59
Query: 278 KECPAQLSRLHIIEGDILQANL 299
+ + + GDI
Sbjct: 60 RWKALTGKSIELYVGDICDFEF 81
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.9 bits (97), Expect = 2e-04
Identities = 32/233 (13%), Positives = 62/233 (26%), Gaps = 50/233 (21%)
Query: 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRK 278
+ L+TG GF+G LLE LL+ + + + + R K + +
Sbjct: 17 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQ 76
Query: 279 ECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTR 338
L + + + + N
Sbjct: 77 GDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNA----------------TNID 120
Query: 339 GTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVL--EEKLYPSPVSPHDIMRAMEWMDDET 396
G +L A K +F + +++ + D L E P+SP+ + + +
Sbjct: 121 GFLNMLIAARDAKV-QSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVN------ 173
Query: 397 IKQLTPKILGPHPNSYTFTKRLTETLVDEY--KTKLPVVIVRPSIVLPSFQEP 447
E D + + +R V Q+P
Sbjct: 174 -----------------------ELYADVFSRCYGFSTIGLRYFNVFGRRQDP 203
|
| >d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]} Length = 31 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transcription factor IIIA, TFIIIA species: Xenopus laevis [TaxId: 8355]
Score = 36.1 bits (83), Expect = 5e-04
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 717 VRTFQCTYPECLKFYAKMSHLKAHLRRHSGE 747
++ + C++ +C Y K L+AHL +H+GE
Sbjct: 1 MKRYICSFADCGAAYNKNWKLQAHLSKHTGE 31
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 40.8 bits (94), Expect = 5e-04
Identities = 37/229 (16%), Positives = 70/229 (30%), Gaps = 30/229 (13%)
Query: 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRK 278
RS LVTG TG G L + LL +V+ L + + RL E
Sbjct: 1 RSALVTGITGQDGAYLAKLLLEKGY---RVHGLVARRSSD-TRWRLRELGIEG------- 49
Query: 279 ECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTR 338
+ +GD+ A ++ + + +EV + + + +
Sbjct: 50 -------DIQYEDGDMADACS-VQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGL 101
Query: 339 GTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVL--EEKLYPSPVSPHDI-MRAMEWMDDE 395
G LL+ + F ST+ + +E P SP+ + W+
Sbjct: 102 GVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITVN 161
Query: 396 TIKQLTPKIL--------GPHPNSYTFTKRLTETLVDEYKTKLPVVIVR 436
+ P T+++T+ + K + +
Sbjct: 162 YRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLG 210
|
| >d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: ADR1 species: Synthetic, based on Saccharomyces cerevisiae sequence
Score = 35.3 bits (82), Expect = 7e-04
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGER 748
R+F C C + +A+ HLK H R H+ E+
Sbjct: 1 RSFVC--EVCTRAFARQEHLKRHYRSHTNEK 29
|
| >d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: ADR1 species: Synthetic, based on Saccharomyces cerevisiae sequence
Score = 34.1 bits (79), Expect = 0.002
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 748 RSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
RSF C+ C F+R + L RH RSH K
Sbjct: 1 RSFVCE--VCTRAFARQEHLKRHYRSHTNEK 29
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (92), Expect = 8e-04
Identities = 44/259 (16%), Positives = 79/259 (30%), Gaps = 49/259 (18%)
Query: 217 AGRSV-LVTGGTGFMGKVLLEKLLRSCPDIGKVYILCR------------AKRGLTPKAR 263
+G V LVTGG +G ++ L R G V + R GL+P+
Sbjct: 1 SGIHVALVTGGNKGIGLAIVRDLCRL--FSGDVVLTARDVTRGQAAVQQLQAEGLSPRFH 58
Query: 264 LAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASL 323
+ L LR + L +L N GI F A
Sbjct: 59 QLDIDDLQSIRALRDFLRKEYGGLD-----VLVNNAGI--------------AFKVADPT 99
Query: 324 KLEAELKENVAANTRGTQRLLDIALK-MKKLVAFIHFSTAFCH---PDQKVLEEKLYPSP 379
+ + + N GT+ + L +K ++ S+ ++ + S
Sbjct: 100 PFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSE 159
Query: 380 VSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKR----LTETLVDEYKTKLPVVIV 435
+ + + E K+ + G ++Y TK L+ + + +
Sbjct: 160 TITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKI 219
Query: 436 RPSIVLPSFQEPVPGWVDS 454
+ PGWV +
Sbjct: 220 LLNAC-------CPGWVRT 231
|
| >d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: ZIF268 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 35.3 bits (82), Expect = 8e-04
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFG 776
++ F+C C FSRSD L+ H R+H G
Sbjct: 1 QKPFQCR--ICMRNFSRSDHLTTHIRTHTG 28
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 40.1 bits (92), Expect = 9e-04
Identities = 33/176 (18%), Positives = 54/176 (30%), Gaps = 25/176 (14%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+L+TGG GF+G L L D+ L R L S L
Sbjct: 3 LLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGA----TDNLHWLSSLG--------- 49
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELK---ENVAANT 337
+ GDI N D L+ + F+ A + + + + N
Sbjct: 50 -----NFEFVHGDIRNKN----DVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINV 100
Query: 338 RGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMD 393
GT LL+ + I+ ST + D + + + + D +
Sbjct: 101 GGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDEST 156
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 39.5 bits (91), Expect = 0.001
Identities = 27/230 (11%), Positives = 60/230 (26%), Gaps = 79/230 (34%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
V + G G +G + +L + G V ++ R +
Sbjct: 5 VFIAGHRGMVGSAIRRQLEQR----GDVELVLRTR------------------------- 35
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAE----LKENVAAN 336
L++++ + E + V+ AA + + + N
Sbjct: 36 ----DELNLLDSRAVHD---------FFASERIDQVYLAAAKVGGIVANNTYPADFIYQN 82
Query: 337 TRGTQRLLDIALKMKKLVAFIHFSTAFCHPD---QKVLEEKLYPSPVSPHDIMRAMEWMD 393
++ A + + + ++ +P Q + E +L + P
Sbjct: 83 MMIESNIIHAAHQ-NDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEP----------- 130
Query: 394 DETIKQLTPKILGPHPNS-YTFTKRLTETLVDEY--KTKLPVVIVRPSIV 440
N Y K L + Y + V P+ +
Sbjct: 131 ---------------TNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNL 165
|
| >d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transcription factor sp1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.2 bits (79), Expect = 0.002
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGER 748
F C PEC K + + HL H++ H ++
Sbjct: 3 FAC--PECPKRFMRSDHLSKHIKTHQNKK 29
|
| >d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29 | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transcription factor sp1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 33.5 bits (77), Expect = 0.004
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 750 FKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
F C +C +F RSD LS+H ++H K
Sbjct: 3 FACP--ECPKRFMRSDHLSKHIKTHQNKK 29
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (86), Expect = 0.003
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK 255
+SV + G +G G+VLL+++L KV ++ R K
Sbjct: 15 KSVFILGASGETGRVLLKEILEQ-GLFSKVTLIGRRK 50
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 38.3 bits (87), Expect = 0.003
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 218 GRSVLVTGGTGFMGKVLLEKLLR 240
G VLVTG GF+ ++E+LL
Sbjct: 11 GSLVLVTGANGFVASHVVEQLLE 33
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 37.9 bits (86), Expect = 0.003
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEF 267
VLVTG +G G+++ +KL L R+ +G A+
Sbjct: 6 VLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQGKEKIGGEADV 51
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 851 | |||
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 99.98 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 99.97 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.96 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.96 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 99.96 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 99.96 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.96 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.96 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 99.95 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 99.95 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 99.95 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 99.95 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.94 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 99.94 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 99.94 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.94 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 99.93 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 99.93 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 99.92 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 99.91 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 99.88 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.88 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 99.85 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 99.85 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.78 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.77 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.77 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.77 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.75 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.62 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.41 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.41 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.4 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.39 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.39 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.38 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.37 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.37 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.37 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.36 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.36 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.36 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.36 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.35 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.35 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.35 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.35 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.35 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.34 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.34 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.34 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.34 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.34 | |
| d2csha1 | 53 | Zinc finger protein 297b {Human (Homo sapiens) [Ta | 99.33 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.32 | |
| d2csha1 | 53 | Zinc finger protein 297b {Human (Homo sapiens) [Ta | 99.32 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.31 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.31 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.3 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.29 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.29 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.29 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.28 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.28 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.26 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.25 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.24 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.24 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.24 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.23 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.23 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.23 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.23 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.22 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.21 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.21 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.2 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.2 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.19 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.16 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.13 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.09 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.08 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.08 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.08 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.07 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.03 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.02 | |
| d2cota2 | 38 | Zinc finger and SCAN domain-containing protein 16, | 98.96 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 98.95 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 98.93 | |
| d1x6ea1 | 33 | Zinc finger protein 24 {Human (Homo sapiens) [TaxI | 98.88 | |
| d2epsa1 | 39 | PATZ1 {Human (Homo sapiens) [TaxId: 9606]} | 98.86 | |
| d2cota2 | 38 | Zinc finger and SCAN domain-containing protein 16, | 98.85 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 98.85 | |
| d2epsa1 | 39 | PATZ1 {Human (Homo sapiens) [TaxId: 9606]} | 98.82 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 98.82 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 98.81 | |
| d1ncsa_ | 47 | SWI5 zinc-finger domains {Baker's yeast (Saccharom | 98.8 | |
| d1x6ea1 | 33 | Zinc finger protein 24 {Human (Homo sapiens) [TaxI | 98.77 | |
| d1p7aa_ | 37 | Kruppel-like factor 3, Bklf {Mouse (Mus musculus) | 98.73 | |
| d1x6ha2 | 36 | Transcriptional repressor CTCF {Human (Homo sapien | 98.7 | |
| d2dlka2 | 36 | Zinc finger protein 692, ZNF692 {Human (Homo sapie | 98.67 | |
| d1p7aa_ | 37 | Kruppel-like factor 3, Bklf {Mouse (Mus musculus) | 98.64 | |
| d1x6ha2 | 36 | Transcriptional repressor CTCF {Human (Homo sapien | 98.62 | |
| d1sp2a_ | 31 | Transcription factor sp1 {Human (Homo sapiens) [Ta | 98.6 | |
| d1srka_ | 35 | Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc | 98.59 | |
| d2adra1 | 29 | ADR1 {Synthetic, based on Saccharomyces cerevisiae | 98.56 | |
| d2dlka2 | 36 | Zinc finger protein 692, ZNF692 {Human (Homo sapie | 98.55 | |
| d1srka_ | 35 | Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc | 98.53 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 98.52 | |
| d1sp1a_ | 29 | Transcription factor sp1 {Human (Homo sapiens) [Ta | 98.5 | |
| d2glia3 | 30 | Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960 | 98.5 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 98.5 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 98.49 | |
| d1ubdc3 | 30 | Ying-yang 1 (yy1, zinc finger domain) {Human (Homo | 98.49 | |
| d2adra1 | 29 | ADR1 {Synthetic, based on Saccharomyces cerevisiae | 98.48 | |
| d1a1ia2 | 28 | ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} | 98.48 | |
| d2ct1a2 | 36 | Transcriptional repressor CTCF {Human (Homo sapien | 98.47 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 98.45 | |
| d1sp1a_ | 29 | Transcription factor sp1 {Human (Homo sapiens) [Ta | 98.45 | |
| d1sp2a_ | 31 | Transcription factor sp1 {Human (Homo sapiens) [Ta | 98.41 | |
| d1a1ia2 | 28 | ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} | 98.41 | |
| d2ct1a2 | 36 | Transcriptional repressor CTCF {Human (Homo sapien | 98.38 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 98.37 | |
| d1ncsa_ | 47 | SWI5 zinc-finger domains {Baker's yeast (Saccharom | 98.36 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 98.35 | |
| d1x6ea2 | 26 | Zinc finger protein 24 {Human (Homo sapiens) [TaxI | 98.31 | |
| d1a1ia1 | 29 | ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} | 98.3 | |
| d2glia3 | 30 | Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960 | 98.29 | |
| d1zfda_ | 32 | SWI5 zinc-finger domains {Baker's yeast (Saccharom | 98.25 | |
| d1ubdc4 | 28 | Ying-yang 1 (yy1, zinc finger domain) {Human (Homo | 98.24 | |
| d1ubdc3 | 30 | Ying-yang 1 (yy1, zinc finger domain) {Human (Homo | 98.24 | |
| d1x6ea2 | 26 | Zinc finger protein 24 {Human (Homo sapiens) [TaxI | 98.14 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 98.13 | |
| d1a1ia1 | 29 | ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} | 98.03 | |
| d1zfda_ | 32 | SWI5 zinc-finger domains {Baker's yeast (Saccharom | 98.0 | |
| d1ubdc4 | 28 | Ying-yang 1 (yy1, zinc finger domain) {Human (Homo | 97.96 | |
| d2dmda2 | 26 | Zinc finger protein 64, ZFP68 {Human (Homo sapiens | 97.62 | |
| d2dmda2 | 26 | Zinc finger protein 64, ZFP68 {Human (Homo sapiens | 97.61 | |
| d2epra1 | 35 | PATZ1 {Human (Homo sapiens) [TaxId: 9606]} | 97.53 | |
| d2epra1 | 35 | PATZ1 {Human (Homo sapiens) [TaxId: 9606]} | 97.41 | |
| d1ubdc2 | 28 | Ying-yang 1 (yy1, zinc finger domain) {Human (Homo | 97.31 | |
| d1tf3a2 | 30 | Transcription factor IIIA, TFIIIA {Xenopus laevis | 97.23 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.16 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.14 | |
| d1ubdc2 | 28 | Ying-yang 1 (yy1, zinc finger domain) {Human (Homo | 97.09 | |
| d2glia4 | 31 | Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960 | 97.04 | |
| d2glia5 | 29 | Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960 | 97.02 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.02 | |
| d1a1ia3 | 28 | ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} | 97.01 | |
| d2dmda3 | 29 | Zinc finger protein 64, ZFP68 {Human (Homo sapiens | 96.91 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 96.88 | |
| d2dmda3 | 29 | Zinc finger protein 64, ZFP68 {Human (Homo sapiens | 96.85 | |
| d2j7ja2 | 29 | Transcription factor IIIA, TFIIIA {Xenopus laevis | 96.79 | |
| d1a1ia3 | 28 | ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} | 96.79 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 96.73 | |
| d2epqa1 | 32 | PATZ1 {Human (Homo sapiens) [TaxId: 9606]} | 96.69 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 96.67 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.49 | |
| d2epqa1 | 32 | PATZ1 {Human (Homo sapiens) [TaxId: 9606]} | 96.48 | |
| d2dlqa4 | 27 | GLI-Krueppel family member HKR3 {Mouse (Mus muscul | 96.46 | |
| d2j7ja2 | 29 | Transcription factor IIIA, TFIIIA {Xenopus laevis | 96.46 | |
| d2glia5 | 29 | Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960 | 96.44 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 96.41 | |
| d2csha2 | 44 | Zinc finger protein 297b {Human (Homo sapiens) [Ta | 96.22 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 96.16 | |
| d1bhia_ | 38 | Transactivation domain of cre-bp1/atf-2 {Human (Ho | 96.12 | |
| d1bboa1 | 28 | Enhancer binding protein {Human (Homo sapiens) [Ta | 96.09 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.08 | |
| d2glia4 | 31 | Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960 | 96.02 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 95.98 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 95.94 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 95.91 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 95.87 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 95.84 | |
| d1bboa1 | 28 | Enhancer binding protein {Human (Homo sapiens) [Ta | 95.8 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 95.8 | |
| d2glia2 | 33 | Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960 | 95.71 | |
| d1tf3a2 | 30 | Transcription factor IIIA, TFIIIA {Xenopus laevis | 95.69 | |
| d2dlqa4 | 27 | GLI-Krueppel family member HKR3 {Mouse (Mus muscul | 95.65 | |
| d1znfa_ | 26 | XFIN, third domain {Xenopus laevis [TaxId: 8355]} | 95.62 | |
| d1tf3a1 | 31 | Transcription factor IIIA, TFIIIA {Xenopus laevis | 95.57 | |
| d2dmda1 | 28 | Zinc finger protein 64, ZFP68 {Human (Homo sapiens | 95.53 | |
| d1njqa_ | 37 | SUPERMAN zinc finger domain {Thale cress (Arabidop | 95.48 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 95.47 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 95.38 | |
| d1bboa2 | 29 | Enhancer binding protein {Human (Homo sapiens) [Ta | 95.35 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 95.3 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 95.22 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 95.19 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 95.19 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 95.07 | |
| d1znfa_ | 26 | XFIN, third domain {Xenopus laevis [TaxId: 8355]} | 95.02 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 94.93 | |
| d1njqa_ | 37 | SUPERMAN zinc finger domain {Thale cress (Arabidop | 94.85 | |
| d2dmda1 | 28 | Zinc finger protein 64, ZFP68 {Human (Homo sapiens | 94.84 | |
| d2dlqa3 | 30 | GLI-Krueppel family member HKR3 {Mouse (Mus muscul | 94.81 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 94.73 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 94.6 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 94.53 | |
| d2j7ja1 | 28 | Transcription factor IIIA, TFIIIA {Xenopus laevis | 94.45 | |
| d2dlqa3 | 30 | GLI-Krueppel family member HKR3 {Mouse (Mus muscul | 94.2 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 94.18 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 94.14 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 94.11 | |
| d2csha2 | 44 | Zinc finger protein 297b {Human (Homo sapiens) [Ta | 93.97 | |
| d1klra_ | 30 | ZFY {Human (Homo sapiens) [TaxId: 9606]} | 93.96 | |
| d1x5wa1 | 28 | Zinc finger protein 64, ZFP68 {Human (Homo sapiens | 93.72 | |
| d2glia2 | 33 | Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960 | 93.63 | |
| d1klra_ | 30 | ZFY {Human (Homo sapiens) [TaxId: 9606]} | 93.42 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 93.09 | |
| d1bhia_ | 38 | Transactivation domain of cre-bp1/atf-2 {Human (Ho | 92.94 | |
| d2adra2 | 31 | ADR1 {Synthetic, based on Saccharomyces cerevisiae | 92.83 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 92.75 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 92.67 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 92.54 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 92.54 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 92.46 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 92.1 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 91.96 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 91.86 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 91.82 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 91.01 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 90.95 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 90.89 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 90.68 | |
| d2adra2 | 31 | ADR1 {Synthetic, based on Saccharomyces cerevisiae | 90.67 | |
| d2dlqa1 | 26 | GLI-Krueppel family member HKR3 {Mouse (Mus muscul | 90.46 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 90.27 | |
| d1bboa2 | 29 | Enhancer binding protein {Human (Homo sapiens) [Ta | 90.03 | |
| d2dlqa1 | 26 | GLI-Krueppel family member HKR3 {Mouse (Mus muscul | 89.68 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 89.25 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 89.22 | |
| d2dlqa2 | 28 | GLI-Krueppel family member HKR3 {Mouse (Mus muscul | 89.09 | |
| d1x5wa1 | 28 | Zinc finger protein 64, ZFP68 {Human (Homo sapiens | 89.02 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 88.8 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 88.39 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 88.36 | |
| d1x5wa2 | 29 | Zinc finger protein 64, ZFP68 {Human (Homo sapiens | 87.94 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 87.52 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 86.58 | |
| d1tf3a1 | 31 | Transcription factor IIIA, TFIIIA {Xenopus laevis | 86.14 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 86.13 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 85.93 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 85.7 | |
| d2j7ja1 | 28 | Transcription factor IIIA, TFIIIA {Xenopus laevis | 85.24 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 85.18 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 85.15 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 82.89 | |
| d1x5wa2 | 29 | Zinc finger protein 64, ZFP68 {Human (Homo sapiens | 82.86 | |
| d2dlka1 | 30 | Zinc finger protein 692, ZNF692 {Human (Homo sapie | 82.79 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 82.65 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 82.12 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 81.97 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 81.91 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 81.63 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 81.51 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 80.86 | |
| d1ubdc1 | 28 | Ying-yang 1 (yy1, zinc finger domain) {Human (Homo | 80.66 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 80.42 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 80.19 |
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.98 E-value=9e-33 Score=304.90 Aligned_cols=242 Identities=17% Similarity=0.119 Sum_probs=180.0
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|++.| ..|++++|..... ..+++..+. .+.....++++++.|||+|.+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g---~~V~~~~r~~~~~-~~~~~~~~~---------~~~~~~~~~~~~~~~Dl~d~~ 68 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKG---YEVHGIKRRASSF-NTERVDHIY---------QDPHTCNPKFHLHYGDLSDTS 68 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEECC-------------------------------CCEEECCCCSSCHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCc---CEEEEEECCCccc-chhhHHHHH---------hhhhhcCCCeEEEEeecCCHH
Confidence 789999999999999999999998 6889999965432 112222221 111223458999999999887
Q ss_pred CCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcC--CceEEEEeeeeeeeCCC--c
Q psy11859 299 LGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMK--KLVAFIHFSTAFCHPDQ--K 369 (851)
Q Consensus 299 lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~--~~~~fV~vSTa~~~~~~--~ 369 (851)
++..+++ ++|+|||+||..++. +++...+++|+.||.|||++|++.+ +.++|||+||+.+||.. .
T Consensus 69 ------~~~~~~~~~~~d~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~ 142 (357)
T d1db3a_ 69 ------NLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEI 142 (357)
T ss_dssp ------HHHHHHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSS
T ss_pred ------HHHHHHhccCCCEEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCC
Confidence 8888887 569999999987654 4567889999999999999999864 45689999999988754 3
Q ss_pred ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC
Q psy11859 370 VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP 447 (851)
Q Consensus 370 ~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p 447 (851)
+++|+.+..|.++ |+.||++||.++..+.+ +++++++||++||||+..+
T Consensus 143 ~~~E~~~~~P~~~-----------------------------Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~ 193 (357)
T d1db3a_ 143 PQKETTPFYPRSP-----------------------------YAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGE 193 (357)
T ss_dssp SBCTTSCCCCCSH-----------------------------HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCT
T ss_pred CcCCCCCCCCCCh-----------------------------HHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCc
Confidence 7899887777776 99999999999999876 8999999999999997643
Q ss_pred ------chhHhhh-hcCCc-eEEEEccc---------CceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 448 ------VPGWVDS-LNGPV-GVLVASGK---------GVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 448 ------~p~~i~~-~~~~~-~~~~~~g~---------~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
+..++.. ..+.. .+.+|.|. |+++++..+.+...+++||+++| .++|+.|+++.+.+.+|.
T Consensus 194 ~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a~~~~~~~~~~~~yni~sg--~~~s~~~~~~~~~~~~g~ 271 (357)
T d1db3a_ 194 TFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFVIATG--VQYSVRQFVEMAAAQLGI 271 (357)
T ss_dssp TSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHHTTSSSSCCCEEECCC--CCEEHHHHHHHHHHTTTE
T ss_pred CCCchHHHHHHHHHHhCCCceEEECCCCeeecceeechHHHHHHHHHhCCCCCeEEECCC--CceehHHHHHHHHHHhCC
Confidence 3344444 33333 34444443 34444444444567789999999 689999999999999874
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.97 E-value=3.4e-29 Score=271.90 Aligned_cols=238 Identities=24% Similarity=0.260 Sum_probs=188.3
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCcc---EEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIG---KVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~---~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
|+|||||||||||++|+++|++.|..|. +|+.+++........ .+.. .....+++++.+|+.
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~-------------~~~~--~~~~~~~~~~~~d~~ 65 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRA-------------NLAP--VDADPRLRFVHGDIR 65 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGG-------------GGGG--GTTCTTEEEEECCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHh-------------Hhhh--hhcCCCeEEEEeccc
Confidence 6899999999999999999999986554 567776654332110 0110 123358999999999
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCcch---hHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--c
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKLEA---ELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--V 370 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~---~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~ 370 (851)
+.. ........+|+|+|+|+...... ++.+.+++|+.||.+|+++|.+.+ +++|||+||+.+||+.. +
T Consensus 66 ~~~------~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~-~~~~I~~Ss~~~yg~~~~~~ 138 (322)
T d1r6da_ 66 DAG------LLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG-VGRVVHVSTNQVYGSIDSGS 138 (322)
T ss_dssp CHH------HHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTT-CCEEEEEEEGGGGCCCSSSC
T ss_pred cch------hhhccccccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcC-CceEEEeecceeecCCCCCC
Confidence 886 77777889999999998876643 455788999999999999999986 89999999999988654 7
Q ss_pred cccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC-
Q psy11859 371 LEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP- 447 (851)
Q Consensus 371 i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p- 447 (851)
++|+.+..|.++ ||.||.++|.++..+.+ +++++++||++||||++.+
T Consensus 139 ~~E~~~~~p~~~-----------------------------Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~ 189 (322)
T d1r6da_ 139 WTESSPLEPNSP-----------------------------YAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPE 189 (322)
T ss_dssp BCTTSCCCCCSH-----------------------------HHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTT
T ss_pred CCCCCCCCCCCH-----------------------------HHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcC
Confidence 888887777776 99999999999998876 9999999999999998765
Q ss_pred --chhHhhhhcCCceEEE-EcccCceeEEEeecC-----------CCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 448 --VPGWVDSLNGPVGVLV-ASGKGVVRSMILNDL-----------STETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 448 --~p~~i~~~~~~~~~~~-~~g~~v~~~~~~~~~-----------~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
+|.++.++..+.++.+ +.|+ ..+.++...+ ...+++||++++ .++++.|+++.+.+.++.
T Consensus 190 ~~i~~~i~~~~~~~~i~v~~~g~-~~r~~i~v~D~a~ai~~~~~~~~~~~~~ni~~~--~~~s~~e~~~~i~~~~~~ 263 (322)
T d1r6da_ 190 KLIPLFVTNLLDGGTLPLYGDGA-NVREWVHTDDHCRGIALVLAGGRAGEIYHIGGG--LELTNRELTGILLDSLGA 263 (322)
T ss_dssp SHHHHHHHHHHTTCCEEEETTSC-CEEEEEEHHHHHHHHHHHHHHCCTTCEEEECCC--CEEEHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHcCCCcEEecCCC-eEEccEEHHHHHHHHHHHHhCCCCCCeeEEeec--ccchhHHHHHHHHHHhCC
Confidence 8888888555555554 4443 3444443333 456789999999 789999999999999885
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.96 E-value=7.4e-30 Score=281.74 Aligned_cols=247 Identities=18% Similarity=0.250 Sum_probs=177.8
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|++.+++ .|.++++...... .+++..+ ...++++++.+||+|+.
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~--vv~~~d~~~~~~~-~~~~~~~--------------~~~~~~~~~~~Dl~d~~ 63 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQD--TVVNIDKLTYAGN-LESLSDI--------------SESNRYNFEHADICDSA 63 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSC--EEEEEECCCTTCC-GGGGTTT--------------TTCTTEEEEECCTTCHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCC--EEEEEeCCCcccc-HHHHHhh--------------hhcCCcEEEEccCCCHH
Confidence 68999999999999999999999863 3666665443321 1111111 12358999999999987
Q ss_pred CCCCHHHHHHHhc--CccEEEEccccCCcch---hHHHHHHHHHHHHHHHHHHHHhcC--------CceEEEEeeeeeee
Q psy11859 299 LGIKDSDLLMLQE--EVSVVFNGAASLKLEA---ELKENVAANTRGTQRLLDIALKMK--------KLVAFIHFSTAFCH 365 (851)
Q Consensus 299 lgls~~~~~~~~~--~vd~ViH~AA~~~~~~---~~~~~~~~Nv~Gt~~ll~~a~~~~--------~~~~fV~vSTa~~~ 365 (851)
.+..+++ ++|+|||+||..+... ++..++++|+.||.+|+++|++.+ ++++|||+||..+|
T Consensus 64 ------~l~~~~~~~~~d~VihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vy 137 (361)
T d1kewa_ 64 ------EITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVY 137 (361)
T ss_dssp ------HHHHHHHHHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGG
T ss_pred ------HHHHHHHhCCCCEEEECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceee
Confidence 7777665 6899999999877643 456789999999999999998764 25699999999999
Q ss_pred CCCc--ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEeccccc
Q psy11859 366 PDQK--VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVL 441 (851)
Q Consensus 366 ~~~~--~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~ 441 (851)
|... +..|.....|...+ .-.....+.||.||.++|.++..+.. +++++++||++||
T Consensus 138 g~~~~~~~~~~~~~~~~~~e-------------------~~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vy 198 (361)
T d1kewa_ 138 GDLPHPDEVENSVTLPLFTE-------------------TTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNY 198 (361)
T ss_dssp CCCCCGGGSCTTSCCCCBCT-------------------TSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEE
T ss_pred CCCccCCccccccCCCCccc-------------------CCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceE
Confidence 8654 22222222211110 00001125599999999999998876 9999999999999
Q ss_pred CCCCCC---chhHhhhhcCCceEE-EEcccCceeEEEeecC-----------CCCccEEEEeCCCCccccHHHHHHHHHH
Q psy11859 442 PSFQEP---VPGWVDSLNGPVGVL-VASGKGVVRSMILNDL-----------STETQVFNISSNEVEAITWGEIISRGKQ 506 (851)
Q Consensus 442 G~~~~p---~p~~i~~~~~~~~~~-~~~g~~v~~~~~~~~~-----------~~~~~iyni~~~~~~~~t~~el~~~~~~ 506 (851)
||++.+ +|.++.++..+.++. .+.|... |.++...+ ...+++||++++ +++++.|+++.+.+
T Consensus 199 Gp~~~~~~~i~~~i~~~~~g~~~~v~g~g~~~-r~~i~v~D~a~ai~~~~~~~~~~~~~Ni~s~--~~~s~~~~~~~i~~ 275 (361)
T d1kewa_ 199 GPYHFPEKLIPLVILNALEGKPLPIYGKGDQI-RDWLYVEDHARALHMVVTEGKAGETYNIGGH--NEKKNLDVVFTICD 275 (361)
T ss_dssp STTCCTTSHHHHHHHHHHHTCCEEEETTSCCE-EEEEEHHHHHHHHHHHHHHCCTTCEEEECCC--CEEEHHHHHHHHHH
T ss_pred CcCCCcCcHHHHHHHHHHcCCCcEEeCCCCeE-EeCEEHHHHHHHHHHHHhcCCCCCeEEECCC--CCcchHHHHhHhhh
Confidence 998754 788888854444444 4544433 43333332 456789999999 78999999999998
Q ss_pred Hhhc
Q psy11859 507 LIYQ 510 (851)
Q Consensus 507 ~~~~ 510 (851)
.++.
T Consensus 276 ~~~~ 279 (361)
T d1kewa_ 276 LLDE 279 (361)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7764
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=5.1e-29 Score=272.42 Aligned_cols=237 Identities=19% Similarity=0.192 Sum_probs=175.5
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCC-HHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLT-PKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~-~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
|+|||||||||||++|++.|++.| ..|++++|...+.. ........ ...+++++.+||+|.
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g---~~V~~~d~~~~~~~~~~~~~~~~---------------~~~~~~~~~~Dl~d~ 62 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNG---HDVIILDNLCNSKRSVLPVIERL---------------GGKHPTFVEGDIRNE 62 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCTTHHHHHHHH---------------HTSCCEEEECCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc---CEEEEEECCCCcchhhHHHHHhh---------------cCCCCEEEEeecCCH
Confidence 689999999999999999999998 67888888655432 11111111 124799999999998
Q ss_pred cCCCCHHHHHHHhc--CccEEEEccccCCcch---hHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--c
Q psy11859 298 NLGIKDSDLLMLQE--EVSVVFNGAASLKLEA---ELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--V 370 (851)
Q Consensus 298 ~lgls~~~~~~~~~--~vd~ViH~AA~~~~~~---~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~ 370 (851)
+ .+..+++ ++|+|||+||...+.. ++.+.+++||.||++||++|++.+ +++||++||..+++... +
T Consensus 63 ~------~l~~~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~-v~~~i~~Ss~~vy~~~~~~~ 135 (338)
T d1udca_ 63 A------LMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN-VKNFIFSSSATVYGDQPKIP 135 (338)
T ss_dssp H------HHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEEEGGGGCSCCSSS
T ss_pred H------HHHHHHhccCCCEEEECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhC-CCEEEecCcceEEccccccc
Confidence 7 7887776 7999999999877653 456889999999999999999985 99999999988886543 3
Q ss_pred ccc-ccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC---CCCEEEEecccccCCCCC
Q psy11859 371 LEE-KLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT---KLPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 371 i~E-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~---~l~~~ivRp~~V~G~~~~ 446 (851)
..| .....|.++ |+.||..+|.++.++.. +++++|+||++||||+..
T Consensus 136 ~~e~~~~~~p~~~-----------------------------Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~ 186 (338)
T d1udca_ 136 YVESFPTGTPQSP-----------------------------YGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPS 186 (338)
T ss_dssp BCTTSCCCCCSSH-----------------------------HHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTT
T ss_pred cccccccCCCcch-----------------------------HHHHHhhhhHHHHHHHhhccCCeEEEEeeccEEeccCC
Confidence 333 333445555 99999999999986543 899999999999998654
Q ss_pred C-------------chhHhhhhcC-CceEEEE-cc-----cCceeEEEeecC--------------CCCccEEEEeCCCC
Q psy11859 447 P-------------VPGWVDSLNG-PVGVLVA-SG-----KGVVRSMILNDL--------------STETQVFNISSNEV 492 (851)
Q Consensus 447 p-------------~p~~i~~~~~-~~~~~~~-~g-----~~v~~~~~~~~~--------------~~~~~iyni~~~~~ 492 (851)
+ +|.++....+ ..++.+. .. ...+|.+....+ ...+++||++++
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd~i~v~D~~~~~~~~~~~~~~~~~~~i~Ni~~~-- 264 (338)
T d1udca_ 187 GDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAG-- 264 (338)
T ss_dssp SSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHTTCCEEEEEEESCS--
T ss_pred CCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCceeeEEEEeehhhhccccccccccccCcceeeecCC--
Confidence 2 3444444433 3344443 21 123344433221 345689999998
Q ss_pred ccccHHHHHHHHHHHhhcC
Q psy11859 493 EAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 493 ~~~t~~el~~~~~~~~~~~ 511 (851)
+++|+.|+++.+.+.+|..
T Consensus 265 ~~~si~e~~~~i~~~~g~~ 283 (338)
T d1udca_ 265 VGNSVLDVVNAFSKACGKP 283 (338)
T ss_dssp SCEEHHHHHHHHHHHHTSC
T ss_pred CCCcHHHHHHHHHHHHCCC
Confidence 7899999999999998853
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.96 E-value=5.9e-29 Score=272.13 Aligned_cols=244 Identities=23% Similarity=0.268 Sum_probs=188.2
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCC-HHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLT-PKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~-~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+.|+|||||||||||++|+++|++.| .+|++++|...+.. ...+++.+... ....+++++.+|+.
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~g---~~V~~~d~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~d~~ 80 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKLD---QKVVGLDNFATGHQRNLDEVRSLVSE-----------KQWSNFKFIQGDIR 80 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCHHHHHHHHHHSCH-----------HHHTTEEEEECCTT
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCc---CEEEEEECCCCcchhhHHHHHHhhhh-----------cccCCeeEEeeccc
Confidence 56899999999999999999999998 68899988655431 11222222111 12348999999999
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--c
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--V 370 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~ 370 (851)
|.. ........+++|+|+||..... .++...+++|+.||.+|+++|.+.+ +++|||+||+.+||... +
T Consensus 81 d~~------~~~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~i~~SS~~vyg~~~~~~ 153 (341)
T d1sb8a_ 81 NLD------DCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAK-VQSFTYAASSSTYGDHPGLP 153 (341)
T ss_dssp SHH------HHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT-CSEEEEEEEGGGGTTCCCSS
T ss_pred ccc------ccccccccccccccccccccccccccCccchhheeehhHHHHHHHHHhcC-CceEEEcccceeeCCCCCCC
Confidence 886 7777788999999999987764 4456789999999999999999986 89999999999988654 7
Q ss_pred cccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC-
Q psy11859 371 LEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP- 447 (851)
Q Consensus 371 i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p- 447 (851)
++|+.+..|.++ |+.||.++|+++..+.+ +++++|+||++|||+...+
T Consensus 154 ~~E~~~~~p~~~-----------------------------Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~ 204 (341)
T d1sb8a_ 154 KVEDTIGKPLSP-----------------------------YAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPN 204 (341)
T ss_dssp BCTTCCCCCCSH-----------------------------HHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCC
T ss_pred ccCCCCCCCCCc-----------------------------chHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCC
Confidence 899888888777 99999999999988876 8999999999999998654
Q ss_pred ------chhHhhhh-cCCceEEEEcccCceeEEEeec---------C---CCCccEEEEeCCCCccccHHHHHHHHHHHh
Q psy11859 448 ------VPGWVDSL-NGPVGVLVASGKGVVRSMILND---------L---STETQVFNISSNEVEAITWGEIISRGKQLI 508 (851)
Q Consensus 448 ------~p~~i~~~-~~~~~~~~~~g~~v~~~~~~~~---------~---~~~~~iyni~~~~~~~~t~~el~~~~~~~~ 508 (851)
++.++.++ .|....+.+.|......++..+ . ...+++||++++ +++|+.|+++.+.+.+
T Consensus 205 ~~~~~~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~D~~~a~~~~~~~~~~~~~~~~~~~~~--~~~si~~i~~~i~~~~ 282 (341)
T d1sb8a_ 205 GAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLDARNQVYNIAVG--GRTSLNQLFFALRDGL 282 (341)
T ss_dssp STTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCGGGCSEEEEESCS--CCEEHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHHcCCceEEcCCCCEEEEEEEEeccchhhhhhhhccccccceeeeeccc--ccchHHHHHHHHHHHh
Confidence 45566664 4554445555543322222211 1 235779999988 7899999999999998
Q ss_pred hcCC
Q psy11859 509 YQYP 512 (851)
Q Consensus 509 ~~~p 512 (851)
+...
T Consensus 283 ~~~~ 286 (341)
T d1sb8a_ 283 AENG 286 (341)
T ss_dssp HHTT
T ss_pred cccc
Confidence 8643
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2e-29 Score=272.63 Aligned_cols=234 Identities=21% Similarity=0.249 Sum_probs=174.4
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|++.| +.|++++|...+.. +.+.. .....++.+..+|+.+..
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g---~~V~~~d~~~~~~~--~~~~~--------------~~~~~~~d~~~~~~~~~~ 62 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDG---HEVTVVDNFFTGRK--RNVEH--------------WIGHENFELINHDVVEPL 62 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCG--GGTGG--------------GTTCTTEEEEECCTTSCC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCc---CEEEEEeCCCcCCH--HHHHH--------------hcCCCceEEEehHHHHHH
Confidence 789999999999999999999998 67888887543321 00100 012236777778776553
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--cccc
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--VLEE 373 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~i~E 373 (851)
+.++|+|||+||.++.. .++.+.+++||.||.+|+++|++.+ + +|||+||..+|++.. ++.|
T Consensus 63 -----------~~~~d~VihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~-~-k~I~~SS~~vy~~~~~~~~~e 129 (312)
T d2b69a1 63 -----------YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG-A-RLLLASTSEVYGDPEVHPQSE 129 (312)
T ss_dssp -----------CCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHT-C-EEEEEEEGGGGBSCSSSSBCT
T ss_pred -----------HcCCCEEEECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcC-C-cEEEEEChheecCCCCCCCCc
Confidence 35799999999987753 4567889999999999999999886 4 799999998887643 5666
Q ss_pred ccCC--CCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC--
Q psy11859 374 KLYP--SPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP-- 447 (851)
Q Consensus 374 ~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p-- 447 (851)
+... .|.+| -+.|+.||.++|.++..+++ +++++++||++||||++.+
T Consensus 130 ~~~~~~~~~~p--------------------------~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~ 183 (312)
T d2b69a1 130 DYWGHVNPIGP--------------------------RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMND 183 (312)
T ss_dssp TCCCBCCSSST--------------------------THHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTC
T ss_pred cccCCCCCCCC--------------------------ccHHHHHHHHHHHHHHHHHHHhCCcEEEEEeeeEECCCCCCCC
Confidence 5422 23333 24599999999999998876 9999999999999998643
Q ss_pred ---chhHhhhh-cCCceEEEEcccC---------ceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHHHHhhcCC
Q psy11859 448 ---VPGWVDSL-NGPVGVLVASGKG---------VVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQLIYQYP 512 (851)
Q Consensus 448 ---~p~~i~~~-~~~~~~~~~~g~~---------v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~p 512 (851)
+|.++.++ .|....+.+.|.. +++++....+...+++||++++ .++++.++++.+.+.++..+
T Consensus 184 ~~~i~~~i~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~~~~~~~~~~~~~~n~~~~--~~~~~~~~~~~i~~~~~~~~ 259 (312)
T d2b69a1 184 GRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNP--EEHTILEFAQLIKNLVGSGS 259 (312)
T ss_dssp CCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSSCCSCEEESCC--CEEEHHHHHHHHHHHHTCCC
T ss_pred ccHHHHHHHHHHcCCCeEEeCCCCeeEccEEHHHHHHHHHHHHhhccCCceEecCC--cccchhhHHHHHHHHhCCCC
Confidence 67888874 4544444555543 3333333333556789999999 78999999999999988643
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.96 E-value=3.8e-28 Score=266.21 Aligned_cols=250 Identities=23% Similarity=0.275 Sum_probs=177.2
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
.|+|||||||||||++|+++|++.|++| .|+++++...+.. ..++ .....++++++.|||+|.
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v-~v~~~d~~~~~~~-~~~~---------------~~~~~~~i~~~~~Di~d~ 64 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDV-HVTVLDKLTYAGN-KANL---------------EAILGDRVELVVGDIADA 64 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTC-EEEEEECCCTTCC-GGGT---------------GGGCSSSEEEEECCTTCH
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCe-EEEEEeCCCcccc-HHHH---------------HHhhcCCeEEEEccCCCH
Confidence 4899999999999999999999999765 4556665433211 0010 011235899999999988
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccc
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEK 374 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~ 374 (851)
+ .+..++...+.|+|+|+..... .++.+.+++|+.||.+|+++|.+.+ .++|++||+.+||... ..|.
T Consensus 65 ~------~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~--~k~i~~ss~~vyg~~~-~~~~ 135 (346)
T d1oc2a_ 65 E------LVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYD--IRFHHVSTDEVYGDLP-LRED 135 (346)
T ss_dssp H------HHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHT--CEEEEEEEGGGGCCBC-CGGG
T ss_pred H------HHHHHHhhhhhhhhhhhcccccchhhCcccceeeehHhHHhhhhhhcccc--ccccccccceEecccC-cccc
Confidence 7 8889999999999999988764 3456789999999999999999886 5789999998887532 2222
Q ss_pred cCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC---ch
Q psy11859 375 LYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP---VP 449 (851)
Q Consensus 375 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p---~p 449 (851)
.+..+..+. +...........+.||.||.++|.++..+.+ +++++|+||++||||++.+ ++
T Consensus 136 ~~~~~~~~~--------------~~~~e~~~~~p~s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~~~~~ 201 (346)
T d1oc2a_ 136 LPGHGEGPG--------------EKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIP 201 (346)
T ss_dssp STTTTCSTT--------------SSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSHHH
T ss_pred ccccccCcc--------------cccccCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCccchhH
Confidence 211111110 0000000011135699999999999998865 9999999999999998643 55
Q ss_pred hHhhh-hcCCceEEEEcccCceeEEEeecC-----------CCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 450 GWVDS-LNGPVGVLVASGKGVVRSMILNDL-----------STETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 450 ~~i~~-~~~~~~~~~~~g~~v~~~~~~~~~-----------~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
.++.. ..+....+++.|... +.++...+ ...+++||++++ ++.++.++++.+.+..+.
T Consensus 202 ~~i~~~~~~~~~~i~~~g~~~-r~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~ 271 (346)
T d1oc2a_ 202 RQITNILAGIKPKLYGEGKNV-RDWIHTNDHSTGVWAILTKGRMGETYLIGAD--GEKNNKEVLELILEKMGQ 271 (346)
T ss_dssp HHHHHHHHTCCCEEETTSCCE-EECEEHHHHHHHHHHHHHHCCTTCEEEECCS--CEEEHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCceeEeCCCCcc-ccccchhhHHHHHHHHHhhcccCcccccccc--ccccchHHHHHHHHHhCC
Confidence 66655 455555555555433 33332222 567889999999 789999999999998875
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=3.4e-28 Score=266.71 Aligned_cols=237 Identities=18% Similarity=0.168 Sum_probs=172.0
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHH-HHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPK-ARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~-~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
|.|||||||||||++|+++|++.| .+|+++++...+.... .+...+ ...+++++.+||+|.
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g---~~V~~~d~~~~~~~~~~~~~~~~---------------~~~~v~~~~~Dl~d~ 63 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENG---YDCVVADNLSNSTYDSVARLEVL---------------TKHHIPFYEVDLCDR 63 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCTHHHHHHHHH---------------HTSCCCEEECCTTCH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCc---CeEEEEECCCCcchhHHHhHHhh---------------cccCCeEEEeecCCH
Confidence 679999999999999999999998 6788888765543221 111111 124788999999988
Q ss_pred cCCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc---
Q psy11859 298 NLGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--- 369 (851)
Q Consensus 298 ~lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--- 369 (851)
+ ++..++. ++|+|||+||..... +.+..+..+|+.||.+|+++|++.+ +++||++||..+||+..
T Consensus 64 ~------~l~~~~~~~~~d~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~-i~~~i~~SS~~vyg~~~~~~ 136 (347)
T d1z45a2 64 K------GLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYN-VSKFVFSSSATVYGDATRFP 136 (347)
T ss_dssp H------HHHHHHHHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEEEGGGGCCGGGST
T ss_pred H------HHHHHHhccCCCEEEEccccccccccccCcccccccchhhhHHHHHHHHhcc-cceEEeecceeeecCcccCC
Confidence 6 7777665 899999999987654 3456789999999999999999885 99999999999888643
Q ss_pred ---ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----CCCEEEEecccccC
Q psy11859 370 ---VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----KLPVVIVRPSIVLP 442 (851)
Q Consensus 370 ---~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----~l~~~ivRp~~V~G 442 (851)
+++|+.+..|.++ |+.||+++|++++.+.. +++++++||++|||
T Consensus 137 ~~~~~~e~~~~~p~~~-----------------------------Y~~sK~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g 187 (347)
T d1z45a2 137 NMIPIPEECPLGPTNP-----------------------------YGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIG 187 (347)
T ss_dssp TCCSBCTTSCCCCCSH-----------------------------HHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEEC
T ss_pred CCCccccccCCCCCCh-----------------------------hHhHHHHHHHHHHHHHHhhccCCcEEEEeecceEe
Confidence 4666665556655 99999999999988742 89999999999999
Q ss_pred CCCCC-------------chhHhhhhcC-CceEE-EEcccC-----ceeEEEeec------------------CCCCccE
Q psy11859 443 SFQEP-------------VPGWVDSLNG-PVGVL-VASGKG-----VVRSMILND------------------LSTETQV 484 (851)
Q Consensus 443 ~~~~p-------------~p~~i~~~~~-~~~~~-~~~g~~-----v~~~~~~~~------------------~~~~~~i 484 (851)
+...+ ++.++..+.+ +.++. .|.+.. .++.+.... ....+++
T Consensus 188 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (347)
T d1z45a2 188 AHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCRE 267 (347)
T ss_dssp CCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEE
T ss_pred ecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccCCceeeeeeeeeccccccccccccccccccccccccc
Confidence 75432 3333333332 22222 232210 122222110 0235689
Q ss_pred EEEeCCCCccccHHHHHHHHHHHhhcC
Q psy11859 485 FNISSNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 485 yni~~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
||++++ .++|+.|+++.+.+..+..
T Consensus 268 ~Ni~~~--~~~s~~e~~~~i~~~~~~~ 292 (347)
T d1z45a2 268 WNLGSG--KGSTVFEVYHAFCKASGID 292 (347)
T ss_dssp EEESCS--CCEEHHHHHHHHHHHHTCC
T ss_pred ceecCC--CcccHHHHHHHHHHHHCCC
Confidence 999998 7899999999999998853
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.95 E-value=9.2e-28 Score=264.79 Aligned_cols=233 Identities=18% Similarity=0.118 Sum_probs=176.0
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++|+|||||||||||++|+++|+++| +.|++++|.+.... +.......+..+|+++
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g---~~V~~~d~~~~~~~---------------------~~~~~~~~~~~~D~~~ 69 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEG---HYVIASDWKKNEHM---------------------TEDMFCDEFHLVDLRV 69 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCCSSS---------------------CGGGTCSEEEECCTTS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCc---CEEEEEeCCCccch---------------------hhhcccCcEEEeechh
Confidence 57899999999999999999999998 68888887665421 1122356788999998
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCc----chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--c
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKL----EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--V 370 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~----~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~ 370 (851)
.+ ++..+++++|+|||+|+.... ...+.....+|+.||.+|+++|++.+ +++||++||+.+++... +
T Consensus 70 ~~------~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~-vk~~i~~SS~~~~~~~~~~~ 142 (363)
T d2c5aa1 70 ME------NCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARING-IKRFFYASSACIYPEFKQLE 142 (363)
T ss_dssp HH------HHHHHHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTT-CSEEEEEEEGGGSCGGGSSS
T ss_pred HH------HHHHHhhcCCeEeecccccccccccccccccccccccchhhHHHHhHHhhC-cccccccccccccccccccc
Confidence 86 777788999999999987765 34567889999999999999999985 99999999998887543 2
Q ss_pred c-------ccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEeccccc
Q psy11859 371 L-------EEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVL 441 (851)
Q Consensus 371 i-------~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~ 441 (851)
. .|..+..|.++ ||.||.+||+++..+.+ +++++++||++||
T Consensus 143 ~~~~~~~~~e~~~~~p~~~-----------------------------Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vy 193 (363)
T d2c5aa1 143 TTNVSLKESDAWPAEPQDA-----------------------------FGLEKLATEELCKHYNKDFGIECRIGRFHNIY 193 (363)
T ss_dssp SSSCEECGGGGSSBCCSSH-----------------------------HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEE
T ss_pred ccccccccccCCcCCCCCH-----------------------------HHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEe
Confidence 2 22333344444 99999999999998876 9999999999999
Q ss_pred CCCCCC--------chhHhhh-hcCCceEEEEcccCc---------eeEEEeecCCCCccEEEEeCCCCccccHHHHHHH
Q psy11859 442 PSFQEP--------VPGWVDS-LNGPVGVLVASGKGV---------VRSMILNDLSTETQVFNISSNEVEAITWGEIISR 503 (851)
Q Consensus 442 G~~~~p--------~p~~i~~-~~~~~~~~~~~g~~v---------~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~ 503 (851)
||++.. ...+... ........++.|... ++++....+...+++||++++ .++|+.|+++.
T Consensus 194 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~~~~~~~~~~~~~~~~~ni~~~--~~~s~~~l~~~ 271 (363)
T d2c5aa1 194 GPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSD--EMVSMNEMAEM 271 (363)
T ss_dssp CTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHHSSCCSCEEECCC--CCEEHHHHHHH
T ss_pred ccCCcccccccccccccccccccccccccccCCCCeEEEEeehhHHHHHHHHHHhCCCCCeEEEecC--CcccHHHHHHH
Confidence 998753 1112222 334444445544322 222222222556789999999 78999999999
Q ss_pred HHHHhhcC
Q psy11859 504 GKQLIYQY 511 (851)
Q Consensus 504 ~~~~~~~~ 511 (851)
+.+..+..
T Consensus 272 i~~~~g~~ 279 (363)
T d2c5aa1 272 VLSFEEKK 279 (363)
T ss_dssp HHHTTTCC
T ss_pred HHHHhCCC
Confidence 99988864
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.95 E-value=1.7e-27 Score=257.71 Aligned_cols=236 Identities=19% Similarity=0.105 Sum_probs=181.1
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|++.|++.| ++|++++|...... ..++..+. ..++++++.+||+|..
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g---~~V~~~~r~~~~~~-~~~l~~~~--------------~~~~~~~~~~Dl~d~~ 62 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKG---YRVHGLVARRSSDT-RWRLRELG--------------IEGDIQYEDGDMADAC 62 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCCSSCC-CHHHHHTT--------------CGGGEEEEECCTTCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc---CEEEEEECCCCccc-HHHHHHhc--------------ccCCcEEEEccccChH
Confidence 689999999999999999999998 78999999765422 34443321 2248999999999986
Q ss_pred CCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--cc
Q psy11859 299 LGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--VL 371 (851)
Q Consensus 299 lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~i 371 (851)
.+..+.. .+++|+|+|+..... .++.+.+++|+.||.++|++|++.+..++|+++||+.+++... ..
T Consensus 63 ------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~ 136 (321)
T d1rpna_ 63 ------SVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQ 136 (321)
T ss_dssp ------HHHHHHHHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSB
T ss_pred ------HhhhhhccccccccccccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCC
Confidence 5655444 578999999887664 3467889999999999999999998777999999988876543 67
Q ss_pred ccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC--
Q psy11859 372 EEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP-- 447 (851)
Q Consensus 372 ~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p-- 447 (851)
+|+.+..|.++ |+.||.++|+++..+.. +++++++||++||||...+
T Consensus 137 ~E~~~~~p~~~-----------------------------Y~~sK~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~ 187 (321)
T d1rpna_ 137 DENTPFYPRSP-----------------------------YGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEF 187 (321)
T ss_dssp CTTSCCCCCSH-----------------------------HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTS
T ss_pred CCCCCccccCh-----------------------------hHHHHHHHHHHHHHHHhhcCCcEEEEEEecccCCCccccc
Confidence 78877777777 99999999999998875 8999999999999997543
Q ss_pred ----chhHhhh-hcCCc-eEEEEcccCceeEEEee----------cCCCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 448 ----VPGWVDS-LNGPV-GVLVASGKGVVRSMILN----------DLSTETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 448 ----~p~~i~~-~~~~~-~~~~~~g~~v~~~~~~~----------~~~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
++.++.+ ..+.. .+.++.|. ..|.+... .+...+++||++++ +++++.++++.+.+..+.
T Consensus 188 ~~~~i~~~~~~~~~~~~~~i~~g~g~-~~r~~i~v~D~~~~~~~~~~~~~~~~~ni~~~--~~~s~~~~~~~~~~~~~~ 263 (321)
T d1rpna_ 188 VTRKVTDAVARIKLGKQQELRLGNVD-AKRDWGFAGDYVEAMWLMLQQDKADDYVVATG--VTTTVRDMCQIAFEHVGL 263 (321)
T ss_dssp HHHHHHHHHHHHHTTSCSCEEESCTT-CEEECEEHHHHHHHHHHHHHSSSCCCEEECCS--CEEEHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHHHhCCCCcEEECCCC-eEEccEEeHHHHHHHHHHHhcCCcCCceeccc--ccceehhhhHHHHHHhCC
Confidence 3344444 33443 34455443 23333322 22456788999998 789999999999998774
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.8e-27 Score=257.85 Aligned_cols=243 Identities=21% Similarity=0.144 Sum_probs=175.0
Q ss_pred CEE-EEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 219 RSV-LVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 219 k~V-lVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
|+| ||||||||||++|+++|++.| ++|++++|....... .++..+.. ........+++++.|||+|+
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g---~~V~~i~r~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~Dl~d~ 68 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKG---YEVHGIVRRSSSFNT-GRIEHLYK--------NPQAHIEGNMKLHYGDLTDS 68 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCCSSCCC-TTTGGGC-----------------CEEEEECCTTCH
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCc---CEEEEEECCCcccch-hhHHHHhh--------chhhhccCCcEEEEeecCCc
Confidence 567 999999999999999999998 789999996543210 11111100 00112235899999999998
Q ss_pred cCCCCHHHHHHHhc--CccEEEEccccCCcch---hHHHHHHHHHHHHHHHHHHHHhcC--CceEEEEeeeeeeeCCC--
Q psy11859 298 NLGIKDSDLLMLQE--EVSVVFNGAASLKLEA---ELKENVAANTRGTQRLLDIALKMK--KLVAFIHFSTAFCHPDQ-- 368 (851)
Q Consensus 298 ~lgls~~~~~~~~~--~vd~ViH~AA~~~~~~---~~~~~~~~Nv~Gt~~ll~~a~~~~--~~~~fV~vSTa~~~~~~-- 368 (851)
+ .+..++. ++++|+|+||..++.. ++...+++|+.||.+|+++|++++ ++++|||+||+.+||+.
T Consensus 69 ~------~~~~~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~ 142 (347)
T d1t2aa_ 69 T------CLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQE 142 (347)
T ss_dssp H------HHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSS
T ss_pred h------hhHHHHhhcccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCC
Confidence 7 6776664 6789999999887643 455678999999999999999875 34689999999998864
Q ss_pred cccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCC
Q psy11859 369 KVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 369 ~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~ 446 (851)
.+++|+.+..|.++ ||.||++||++++.+.+ +++++++||++||||+..
T Consensus 143 ~~~~E~~~~~P~~~-----------------------------Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~ 193 (347)
T d1t2aa_ 143 IPQKETTPFYPRSP-----------------------------YGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRG 193 (347)
T ss_dssp SSBCTTSCCCCCSH-----------------------------HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred CCCCCCCCCCCCCH-----------------------------HHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCC
Confidence 37889888777777 99999999999998765 999999999999999765
Q ss_pred Cc---hh----HhhhhcC-CceEEEEccc---------CceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHHHHhh
Q psy11859 447 PV---PG----WVDSLNG-PVGVLVASGK---------GVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQLIY 509 (851)
Q Consensus 447 p~---p~----~i~~~~~-~~~~~~~~g~---------~v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~~~~ 509 (851)
+. +. ++....+ .....++.|. |+++++....+....+.|+++.+ ...++.+.........+
T Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~g~g~~~r~~i~v~D~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 271 (347)
T d1t2aa_ 194 ANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFVIATG--EVHSVREFVEKSFLHIG 271 (347)
T ss_dssp TTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHHHHHHHHHSSSCCCEEECCS--CCEEHHHHHHHHHHHTT
T ss_pred CCccccccceeeehhhcCCcceeecCCCcceeeeeEecHHHHHHHHHhhcCCCccceeccc--cccccchhhhhhhhhhc
Confidence 41 11 2233333 3344444442 22333322222445567888888 67899999999888877
Q ss_pred c
Q psy11859 510 Q 510 (851)
Q Consensus 510 ~ 510 (851)
.
T Consensus 272 ~ 272 (347)
T d1t2aa_ 272 K 272 (347)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=5.8e-27 Score=256.05 Aligned_cols=244 Identities=20% Similarity=0.207 Sum_probs=172.5
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|++.|. .+|+++++.+.+.. . + ...++++++.|||++..
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~--~~V~~ld~~~~~~~------~---------~-----~~~~~~~~i~~Di~~~~ 58 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDH--YEVYGLDIGSDAIS------R---------F-----LNHPHFHFVEGDISIHS 58 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT--CEEEEEESCCGGGG------G---------G-----TTCTTEEEEECCTTTCS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--CEEEEEeCCCcchh------h---------h-----ccCCCeEEEECccCChH
Confidence 6899999999999999999999873 47999988654310 0 0 11358999999999876
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcch---hHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--cccc
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLEA---ELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--VLEE 373 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~~---~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~i~E 373 (851)
+..+.+.+++|+|||+||...... .+..++.+|+.||.+++++|.+.+ + +++++||+.+++... ...|
T Consensus 59 -----~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~-~-~~~~~ss~~~~~~~~~~~~~~ 131 (342)
T d2blla1 59 -----EWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K-RIIFPSTSEVYGMCSDKYFDE 131 (342)
T ss_dssp -----HHHHHHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-C-EEEEECCGGGGBTCCCSSBCT
T ss_pred -----HHHHHHHhCCCccccccccccccccccCCcccccccccccccccccccccc-c-ccccccccccccccccccccc
Confidence 133446678999999999987654 345789999999999999999885 4 556788877766543 3333
Q ss_pred ccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC----
Q psy11859 374 KLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP---- 447 (851)
Q Consensus 374 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p---- 447 (851)
.....+.++ ....-+.|+.||.++|+++..+.+ +++++|+||+.++||+..+
T Consensus 132 ~~~~~~~~~----------------------~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~ 189 (342)
T d2blla1 132 DHSNLIVGP----------------------VNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAA 189 (342)
T ss_dssp TTCCCBCCC----------------------TTCGGGHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCS
T ss_pred ccccccccc----------------------cCCCcchhhhcccchhhhhhhhhcccCceeEEeeccccccccccccccc
Confidence 322221111 000024599999999999998876 9999999999999996533
Q ss_pred -------chhHhhhh-cCCceEEEEcccC---------ceeEEEeecC----CCCccEEEEeCCCCccccHHHHHHHHHH
Q psy11859 448 -------VPGWVDSL-NGPVGVLVASGKG---------VVRSMILNDL----STETQVFNISSNEVEAITWGEIISRGKQ 506 (851)
Q Consensus 448 -------~p~~i~~~-~~~~~~~~~~g~~---------v~~~~~~~~~----~~~~~iyni~~~~~~~~t~~el~~~~~~ 506 (851)
++.++.++ .|....+++.|.. +++++....+ ...+++||+++++ +++|+.|+++.+.+
T Consensus 190 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~r~~i~v~D~~~a~~~~~~~~~~~~~g~~~Nig~~~-~~~t~~~l~~~i~~ 268 (342)
T d2blla1 190 RIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPE-NEASIEELGEMLLA 268 (342)
T ss_dssp BSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCTT-SEEEHHHHHHHHHH
T ss_pred cccccccchHHHHHHHhCCCccccCCCCeeeeecccccccceeeeehhhccccCCCeEEEEeccc-chhHHHHHHHHHHH
Confidence 45566664 4554444444432 2222222111 3457899998874 56899999999999
Q ss_pred HhhcCCCC
Q psy11859 507 LIYQYPLE 514 (851)
Q Consensus 507 ~~~~~p~~ 514 (851)
..+..+..
T Consensus 269 ~~~~~~~~ 276 (342)
T d2blla1 269 SFEKHPLR 276 (342)
T ss_dssp HHHTCTTG
T ss_pred HhCCCccc
Confidence 98875543
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.7e-26 Score=252.77 Aligned_cols=241 Identities=17% Similarity=0.157 Sum_probs=170.2
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCC----CHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGL----TPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~----~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
.|+|||||||||||++|+++|++.| +.|++++|...+. ...++++.+. .....++.++.+|
T Consensus 2 ~kKILITG~tGfIGs~lv~~Ll~~g---~~V~~ld~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~D 66 (346)
T d1ek6a_ 2 AEKVLVTGGAGYIGSHTVLELLEAG---YLPVVIDNFHNAFRGGGSLPESLRRVQ------------ELTGRSVEFEEMD 66 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTT---CCEEEEECSSSSCBCSSSSBHHHHHHH------------HHHTCCCEEEECC
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCc---CEEEEEECCCccccccccchHHHHHHH------------HhcCCCcEEEEee
Confidence 3789999999999999999999998 5677776533221 1112221110 0113489999999
Q ss_pred CCCCcCCCCHHHHHHHhc--CccEEEEccccCCcch---hHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC
Q psy11859 294 ILQANLGIKDSDLLMLQE--EVSVVFNGAASLKLEA---ELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ 368 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~--~vd~ViH~AA~~~~~~---~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~ 368 (851)
++|.. .+..++. .+++|+|+||..+... .+.+.+++||.||.+++++|++.+ +++||++||+.+++..
T Consensus 67 l~d~~------~l~~~~~~~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~-v~~~i~~ss~~~~~~~ 139 (346)
T d1ek6a_ 67 ILDQG------ALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG-VKNLVFSSSATVYGNP 139 (346)
T ss_dssp TTCHH------HHHHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGGCSC
T ss_pred ccccc------cccccccccccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcC-cccccccccceeeecc
Confidence 99886 6666554 5779999999887643 456889999999999999999985 9999999998877765
Q ss_pred cc---cccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC---CCCEEEEecccccC
Q psy11859 369 KV---LEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT---KLPVVIVRPSIVLP 442 (851)
Q Consensus 369 ~~---i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~---~l~~~ivRp~~V~G 442 (851)
.. ..+.....|.+| |+.+|..+|+.+.++.+ +++.+++||++|||
T Consensus 140 ~~~~~~~~~~~~~~~~~-----------------------------Y~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G 190 (346)
T d1ek6a_ 140 QYLPLDEAHPTGGCTNP-----------------------------YGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTG 190 (346)
T ss_dssp SSSSBCTTSCCCCCSSH-----------------------------HHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEEC
T ss_pred ccccccccccccccCCh-----------------------------HHHHHHHHHHHHHHHHHhccCCceEEEeecceec
Confidence 42 222223334444 99999999999987643 89999999999999
Q ss_pred CCCCC-------------chhHhhhhcC-CceEEEEccc-----C-ceeEEEeecC--------------CCCccEEEEe
Q psy11859 443 SFQEP-------------VPGWVDSLNG-PVGVLVASGK-----G-VVRSMILNDL--------------STETQVFNIS 488 (851)
Q Consensus 443 ~~~~p-------------~p~~i~~~~~-~~~~~~~~g~-----~-v~~~~~~~~~--------------~~~~~iyni~ 488 (851)
|.... +|.++....+ ..++.+.+.. | ..|.+....+ ...+++||++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~Rdfi~v~D~a~~~~~~~~~~~~~~~~~i~Ni~ 270 (346)
T d1ek6a_ 191 AHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLG 270 (346)
T ss_dssp CCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred cCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCcccCCCCCeeEeEEEEEeccchhhhhccccccccCceEEEeC
Confidence 86532 3333443333 3333332111 1 1344443222 3467899999
Q ss_pred CCCCccccHHHHHHHHHHHhhcC
Q psy11859 489 SNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 489 ~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
++ +++++.|+++.+.+.++..
T Consensus 271 ~~--~~~s~~dl~~~i~~~~~~~ 291 (346)
T d1ek6a_ 271 TG--TGYSVLQMVQAMEKASGKK 291 (346)
T ss_dssp CS--CCEEHHHHHHHHHHHHCSC
T ss_pred CC--CcccHHHHHHHHHHHhCCC
Confidence 98 7899999999999999863
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=99.94 E-value=2.3e-27 Score=259.53 Aligned_cols=258 Identities=20% Similarity=0.189 Sum_probs=175.1
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
+||+|||||||||||++|+++|++.| +.|++++|+... ...+..... .+........+.+|+++
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G---~~V~~~vR~~~~---~~~~~~~~~----------~~~~~~~~~~~~~Dl~~ 73 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLLEHG---YKVRGTARSASK---LANLQKRWD----------AKYPGRFETAVVEDMLK 73 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSHHH---HHHHHHHHH----------HHSTTTEEEEECSCTTS
T ss_pred CcCEEEEECCCCHHHHHHHHHHHHCc---CEEEEEeCCchh---HHHHHHhhh----------ccccccccEEEeccccc
Confidence 38999999999999999999999998 788999996432 122211110 01112244568899999
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc------c
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK------V 370 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~------~ 370 (851)
+. .+..++.++|+|+|+|+...+..++...+.+||.||.++|++|.+.+.+++|||+||..+.+... .
T Consensus 74 ~~------~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~ 147 (342)
T d1y1pa1 74 QG------AYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIY 147 (342)
T ss_dssp TT------TTTTTTTTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCE
T ss_pred hh------hhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCcc
Confidence 87 77788899999999999999888888899999999999999999987799999999975433221 1
Q ss_pred cccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----CCCEEEEecccccCCCCC
Q psy11859 371 LEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT----KLPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 371 i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~----~l~~~ivRp~~V~G~~~~ 446 (851)
.+|+. .+...+... .........+..+.|+.||+++|++++.+.+ ++.++++||++|+||...
T Consensus 148 ~~e~~----~~~~~~~~~---------~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~ 214 (342)
T d1y1pa1 148 LDEKS----WNLESIDKA---------KTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFD 214 (342)
T ss_dssp ECTTC----CCHHHHHHH---------HHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSC
T ss_pred ccccc----ccccccccc---------ccccccCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCC
Confidence 22221 111110000 0001111111235699999999999887743 688999999999998654
Q ss_pred C------chhHhhhh-cCCce--------EEEEcccCceeEEEeecC-CCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 447 P------VPGWVDSL-NGPVG--------VLVASGKGVVRSMILNDL-STETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 447 p------~p~~i~~~-~~~~~--------~~~~~g~~v~~~~~~~~~-~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
| ++.|+..+ .+... ..+...+|++++++.+.+ ...++.||++++ .+++|.|+++.+.+.++.
T Consensus 215 ~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~v~v~Dva~~~i~~l~~~~~~g~~~~~~~--~~~t~~eia~~i~k~~p~ 292 (342)
T d1y1pa1 215 PETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTA--GTFDWNTVLATFRKLYPS 292 (342)
T ss_dssp TTTCCCHHHHHHHHHHTTCCCHHHHTCCSEEEEEHHHHHHHHHHHHHCTTCCSCEEEECC--EEECHHHHHHHHHHHCTT
T ss_pred ccccccchHHHHHHHHcCCcCcccCCccceeeeeHHHHHHHHHHhhcCccccceEEEEcC--CceEHHHHHHHHHHHcCC
Confidence 3 45555553 22211 112233455555443332 344556778887 689999999999998754
Q ss_pred C
Q psy11859 511 Y 511 (851)
Q Consensus 511 ~ 511 (851)
.
T Consensus 293 ~ 293 (342)
T d1y1pa1 293 K 293 (342)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.94 E-value=3.3e-26 Score=255.11 Aligned_cols=247 Identities=15% Similarity=0.093 Sum_probs=164.8
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEec---C-----------CCCCCHHHHHHHHhcChhhHHHhhhCccc
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCR---A-----------KRGLTPKARLAEFSKLPVFERLRKECPAQ 283 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R---~-----------~~~~~~~~rl~~~~~~~~f~~l~~~~~~~ 283 (851)
||+|||||||||||++|+++|++.| +.|++++. . .......+++... ....
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g---~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 65 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKN---YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRW------------KALT 65 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHH------------HHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc---CEEEEEecCCcccccccccccccccccchHHHHHHH------------Hhhc
Confidence 7999999999999999999999999 56777652 1 1111122222111 0012
Q ss_pred CCCeEEEEcCCCCCcCCCCHHHHHHHhc--CccEEEEccccCCcch------hHHHHHHHHHHHHHHHHHHHHhcCCceE
Q psy11859 284 LSRLHIIEGDILQANLGIKDSDLLMLQE--EVSVVFNGAASLKLEA------ELKENVAANTRGTQRLLDIALKMKKLVA 355 (851)
Q Consensus 284 ~~~v~~v~gDi~~~~lgls~~~~~~~~~--~vd~ViH~AA~~~~~~------~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~ 355 (851)
.++++++.|||+|.+ .+..+++ ++|+|||+||...+.. .+...+.+||.||.+||++|++.+..+.
T Consensus 66 ~~~i~~~~~Dl~d~~------~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~ 139 (393)
T d1i24a_ 66 GKSIELYVGDICDFE------FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECH 139 (393)
T ss_dssp CCCCEEEESCTTSHH------HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCE
T ss_pred CCCcEEEEccCCCHH------HHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccc
Confidence 347999999999987 7788776 5799999999876542 2446789999999999999999876678
Q ss_pred EEEeeeeeeeCCCc-cccccc-----------CCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHH
Q psy11859 356 FIHFSTAFCHPDQK-VLEEKL-----------YPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLV 423 (851)
Q Consensus 356 fV~vSTa~~~~~~~-~i~E~~-----------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v 423 (851)
|+++||+.+++... +..|.. .+.|.+| .+.|+.||++||.++
T Consensus 140 ~i~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--------------------------~~~Y~~sK~~aE~~~ 193 (393)
T d1i24a_ 140 LVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQA--------------------------SSFYHLSKVHDSHNI 193 (393)
T ss_dssp EEEECCGGGGCCCSSCBCSSEEEEEETTEEEEEECCCCC--------------------------CSHHHHHHHHHHHHH
T ss_pred eeecccccccccccccccccccccccccccccccccccc--------------------------ccHHHHHhhhhcccc
Confidence 88888877766432 222211 1112222 355999999999999
Q ss_pred HHHhC--CCCEEEEecccccCCCCCC--------------------chhHhhhh-cCCceEEEEcccCceeEEEeecC--
Q psy11859 424 DEYKT--KLPVVIVRPSIVLPSFQEP--------------------VPGWVDSL-NGPVGVLVASGKGVVRSMILNDL-- 478 (851)
Q Consensus 424 ~~~~~--~l~~~ivRp~~V~G~~~~p--------------------~p~~i~~~-~~~~~~~~~~g~~v~~~~~~~~~-- 478 (851)
..+.. +++++++||++||||+..+ ++.++.+. .+....+.|.|.. .|.+....+
T Consensus 194 ~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~-~rd~v~v~D~~ 272 (393)
T d1i24a_ 194 AFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQ-TRGYLDIRDTV 272 (393)
T ss_dssp HHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCHHHHHHHHHHHTCCEEEETTSCC-EEEEEEHHHHH
T ss_pred cccccccceeeeecccccccCCCccccccccccccccccccccccchhhhhHHhhcCCeeEEeeeccc-ccccccccchH
Confidence 88865 9999999999999997543 23445443 4444444454433 333332222
Q ss_pred ---------CCCccEEEEeCCCCccccHHHHHHHHHHHhhcCC
Q psy11859 479 ---------STETQVFNISSNEVEAITWGEIISRGKQLIYQYP 512 (851)
Q Consensus 479 ---------~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~p 512 (851)
....+.|++.++..+++|+.|+++.+.+..+..+
T Consensus 273 ~a~~~~~~~~~~~g~~~~~~~~~~~~si~el~~~i~~~~~~~~ 315 (393)
T d1i24a_ 273 QCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKLG 315 (393)
T ss_dssp HHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhcccceeeeecCCCCeeEHHHHHHHHHHHHHhhC
Confidence 2233334332211157899999999988876543
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.94 E-value=7.5e-27 Score=259.49 Aligned_cols=250 Identities=19% Similarity=0.197 Sum_probs=172.1
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCC---CC---CHHHHHHHHhcChhhHHHhhhCc-ccCCCeEE
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKR---GL---TPKARLAEFSKLPVFERLRKECP-AQLSRLHI 289 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~---~~---~~~~rl~~~~~~~~f~~l~~~~~-~~~~~v~~ 289 (851)
.+|+|||||||||||++|+++||+.+. +.|+++++-.. .. ...++.... +.......+ ....++.+
T Consensus 1 ~~MKVLITG~tGfIGs~lv~~LL~~~~--~~V~~~D~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 73 (383)
T d1gy8a_ 1 SHMRVLVCGGAGYIGSHFVRALLRDTN--HSVVIVDSLVGTHGKSDHVETRENVARK-----LQQSDGPKPPWADRYAAL 73 (383)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHHCC--CEEEEEECCTTTTTCCTTSCCHHHHHHH-----HHHSCSSCCTTTTCCCEE
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHhCC--CEEEEEecCCcccccchhhhhhhhHHHH-----hhhhccccccccccceEE
Confidence 368999999999999999999997532 67888874221 11 111111111 111111111 12357889
Q ss_pred EEcCCCCCcCCCCHHHHHHHhc---CccEEEEccccCCcch---hHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeee
Q psy11859 290 IEGDILQANLGIKDSDLLMLQE---EVSVVFNGAASLKLEA---ELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAF 363 (851)
Q Consensus 290 v~gDi~~~~lgls~~~~~~~~~---~vd~ViH~AA~~~~~~---~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~ 363 (851)
+.|||+|++ .+..+++ ++|+|||+||...... .+...+++|+.||.++|++|++.+ +++++++||..
T Consensus 74 ~~~Di~d~~------~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~-~~~~~~~~s~~ 146 (383)
T d1gy8a_ 74 EVGDVRNED------FLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHK-CDKIIFSSSAA 146 (383)
T ss_dssp EESCTTCHH------HHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEEEGG
T ss_pred EECcccCHH------HhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccC-Ccccccccccc
Confidence 999999986 6666654 6799999999887653 455778999999999999999885 89999999987
Q ss_pred eeCCCc---------ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCE
Q psy11859 364 CHPDQK---------VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPV 432 (851)
Q Consensus 364 ~~~~~~---------~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~ 432 (851)
+++... ++.|+....|.++ |+.||+.+|+++..+.+ ++++
T Consensus 147 ~~~~~~~~~~~~~~~~~~e~~~~~p~~~-----------------------------Y~~sK~~~e~~~~~~~~~~gl~~ 197 (383)
T d1gy8a_ 147 IFGNPTMGSVSTNAEPIDINAKKSPESP-----------------------------YGESKLIAERMIRDCAEAYGIKG 197 (383)
T ss_dssp GTBSCCC-----CCCCBCTTSCCBCSSH-----------------------------HHHHHHHHHHHHHHHHHHHCCEE
T ss_pred cccccccccccccccccccccCCCCCCH-----------------------------HHhhHhHHHHHHHHHHHHhCCCE
Confidence 765432 3555555556655 99999999999999875 9999
Q ss_pred EEEecccccCCCCCC------------chhHhhhh----cC------------CceEEE-Ecc----c-CceeEEEeecC
Q psy11859 433 VIVRPSIVLPSFQEP------------VPGWVDSL----NG------------PVGVLV-ASG----K-GVVRSMILNDL 478 (851)
Q Consensus 433 ~ivRp~~V~G~~~~p------------~p~~i~~~----~~------------~~~~~~-~~g----~-~v~~~~~~~~~ 478 (851)
+++||++||||++.+ +|.++..+ .. +.++.+ |.. + ..+|.++...+
T Consensus 198 ~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D 277 (383)
T d1gy8a_ 198 ICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCD 277 (383)
T ss_dssp EEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHH
T ss_pred EEEecceeeccCccccccccccccchhHHHHHHHHHhhccccccchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHH
Confidence 999999999998753 33343332 11 111222 110 1 12333332111
Q ss_pred --------------------CCCccEEEEeCCCCccccHHHHHHHHHHHhhcC
Q psy11859 479 --------------------STETQVFNISSNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 479 --------------------~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
...+++||++++ +++++.|+++.+.+.++..
T Consensus 278 ~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~--~~~s~~el~~~i~~~~~~~ 328 (383)
T d1gy8a_ 278 LASAHILALDYVEKLGPNDKSKYFSVFNLGTS--RGYSVREVIEVARKTTGHP 328 (383)
T ss_dssp HHHHHHHHHHHHHTCCTTTGGGSEEEEEESCS--CCEEHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhhhccccccccccCccEEEeCCC--CceeHHHHHHHHHHHhCCC
Confidence 234689999999 7899999999999998854
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.93 E-value=2.6e-25 Score=242.16 Aligned_cols=243 Identities=17% Similarity=0.116 Sum_probs=174.8
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCc-ccCCCeEEEEcCCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECP-AQLSRLHIIEGDILQA 297 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~-~~~~~v~~v~gDi~~~ 297 (851)
|+|||||||||||++|++.|++.| +.|++++|..+... .+++.. +..... .....++++.+|+++.
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g---~~V~~~~r~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~Di~~~ 68 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKG---YEVHGLIRRSSNFN-TQRINH---------IYIDPHNVNKALMKLHYADLTDA 68 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCCSSCC-CTTTTT---------TC--------CCEEEEECCTTCH
T ss_pred CEEEEeCCccHHHHHHHHHHHHCc---CEEEEEECCCcccc-hhhhhh---------hhhhhhhccccceEEEEccccCH
Confidence 789999999999999999999999 78999999654211 111111 100000 1124788999999987
Q ss_pred cCCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcC----CceEEEEeeeeeeeCCC
Q psy11859 298 NLGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMK----KLVAFIHFSTAFCHPDQ 368 (851)
Q Consensus 298 ~lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~----~~~~fV~vSTa~~~~~~ 368 (851)
. .+...++ ++|+|||+||..... +++...+.+|+.||.+++++|++.. ...++++.||+++++..
T Consensus 69 ~------~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~ 142 (339)
T d1n7ha_ 69 S------SLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGST 142 (339)
T ss_dssp H------HHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTS
T ss_pred H------HHHHHHhhhccchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccC
Confidence 6 6666554 789999999998765 4566889999999999999997643 34578899998888766
Q ss_pred c-ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCC
Q psy11859 369 K-VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 369 ~-~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~ 445 (851)
. .++|+.+..|.++ |+.||..+|.++..+.+ +++++++||++||||+.
T Consensus 143 ~~~~~E~~~~~p~~~-----------------------------Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~ 193 (339)
T d1n7ha_ 143 PPPQSETTPFHPRSP-----------------------------YAASKCAAHWYTVNYREAYGLFACNGILFNHESPRR 193 (339)
T ss_dssp CSSBCTTSCCCCCSH-----------------------------HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTS
T ss_pred CCCCCCCCCCCCcch-----------------------------hhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCC
Confidence 5 6888887777777 99999999999988876 99999999999999976
Q ss_pred CC------chhHhhh-hcCC-ceEEEEcccC---------ceeEEEeecCCCCccEEEEeCCCCccccHHHHHHHHHHHh
Q psy11859 446 EP------VPGWVDS-LNGP-VGVLVASGKG---------VVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQLI 508 (851)
Q Consensus 446 ~p------~p~~i~~-~~~~-~~~~~~~g~~---------v~~~~~~~~~~~~~~iyni~~~~~~~~t~~el~~~~~~~~ 508 (851)
.+ ++.++.. ..+. ..++.|.|.. +++++....+......+++..+ .+.++.++++.+.+..
T Consensus 194 ~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~rd~~~v~D~a~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~ 271 (339)
T d1n7ha_ 194 GENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKPDDYVVATE--EGHTVEEFLDVSFGYL 271 (339)
T ss_dssp CTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHHHHHHHHHTSSSCCEEEECCS--CEEEHHHHHHHHHHHT
T ss_pred CCCCCcchhhHHHHHHhcCCCCeEEeCCCCccccceeeehHHHHHHHHHhcCCCCccccccc--cccccchhhhhhhhhh
Confidence 54 2333333 2333 3344443322 2222222233445566777777 6799999999999988
Q ss_pred hcC
Q psy11859 509 YQY 511 (851)
Q Consensus 509 ~~~ 511 (851)
+..
T Consensus 272 ~~~ 274 (339)
T d1n7ha_ 272 GLN 274 (339)
T ss_dssp TCC
T ss_pred hcc
Confidence 753
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.5e-25 Score=241.71 Aligned_cols=220 Identities=14% Similarity=0.157 Sum_probs=158.2
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
.|+|||||||||||++|+++|++.| +.|+++++.. +.|+.+.
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g---~~vi~~~~~~-----------------------------------~~~~~~~ 43 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRG---DVELVLRTRD-----------------------------------ELNLLDS 43 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCT---TEEEECCCTT-----------------------------------TCCTTCH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCc---CEEEEecCch-----------------------------------hccccCH
Confidence 4789999999999999999999998 4555544321 1356655
Q ss_pred cCCCCHHHHHHHhc--CccEEEEccccCCcc----hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--
Q psy11859 298 NLGIKDSDLLMLQE--EVSVVFNGAASLKLE----AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK-- 369 (851)
Q Consensus 298 ~lgls~~~~~~~~~--~vd~ViH~AA~~~~~----~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~-- 369 (851)
. .+..+++ .+|+|||+|+.+... .+..+.+++||.||.+|+++|.+.+ +++|||+||..+||...
T Consensus 44 ~------~~~~~~~~~~~d~v~~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-v~~~i~~SS~~vyg~~~~~ 116 (315)
T d1e6ua_ 44 R------AVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQND-VNKLLFLGSSCIYPKLAKQ 116 (315)
T ss_dssp H------HHHHHHHHHCCSEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEECCGGGSCTTCCS
T ss_pred H------HHHHHHhhcCCCEEEEcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEECCceEcCCCCCC
Confidence 4 5555543 689999999887643 3456778999999999999999985 99999999999998654
Q ss_pred ccccccCCC-CCCHHHHHHHHhhccHHHHhhhCCcccCCCC-chhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCC
Q psy11859 370 VLEEKLYPS-PVSPHDIMRAMEWMDDETIKQLTPKILGPHP-NSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 370 ~i~E~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~ 445 (851)
+++|+.+.. +..+ | +.|+.||.+||+++..+.+ +++++|+||++||||++
T Consensus 117 ~~~E~~~~~~~~~~--------------------------~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~ 170 (315)
T d1e6ua_ 117 PMAESELLQGTLEP--------------------------TNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHD 170 (315)
T ss_dssp SBCGGGTTSSCCCG--------------------------GGHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTC
T ss_pred CccCCccccCCCCC--------------------------CCCHHHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCC
Confidence 567764322 1222 2 2499999999999998876 99999999999999987
Q ss_pred CCc-------h-----hHhhhhcCCce-EEEEcccCceeEEEeecC--------------------CCCccEEEEeCCCC
Q psy11859 446 EPV-------P-----GWVDSLNGPVG-VLVASGKGVVRSMILNDL--------------------STETQVFNISSNEV 492 (851)
Q Consensus 446 ~p~-------p-----~~i~~~~~~~~-~~~~~g~~v~~~~~~~~~--------------------~~~~~iyni~~~~~ 492 (851)
... + .+.....+... .+.+.|.. .+.+....+ .....++|++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~-~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 247 (315)
T d1e6ua_ 171 NFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTP-MREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTG-- 247 (315)
T ss_dssp CCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCC-EECEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCS--
T ss_pred CCCccccccceeeeccchhhhhccCCceEEcCCCce-EEEEEEeehhHHHHHHhhhhccccccccccccccccccCCC--
Confidence 531 1 11222233333 33333332 333333322 234568999988
Q ss_pred ccccHHHHHHHHHHHhhcC
Q psy11859 493 EAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 493 ~~~t~~el~~~~~~~~~~~ 511 (851)
.+.++.++++.+.+..+..
T Consensus 248 ~~~~i~~~~~~i~~~~~~~ 266 (315)
T d1e6ua_ 248 VDCTIRELAQTIAKVVGYK 266 (315)
T ss_dssp CCEEHHHHHHHHHHHHTCC
T ss_pred cchHHHHHHHHHHHHhCCC
Confidence 6799999999999988753
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=99.92 E-value=6.5e-25 Score=240.67 Aligned_cols=246 Identities=20% Similarity=0.233 Sum_probs=183.3
Q ss_pred hhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 213 ARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 213 ~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
.+||+||+|||||||||||++|+++|++.| ..|++++|........ ++.+ ...++++++.|
T Consensus 3 ~~~~~~KkILVTG~tGfIGs~lv~~Ll~~g---~~V~~~~r~~~~~~~~-----------~~~~-----~~~~~i~~~~~ 63 (356)
T d1rkxa_ 3 NSFWQGKRVFVTGHTGFKGGWLSLWLQTMG---ATVKGYSLTAPTVPSL-----------FETA-----RVADGMQSEIG 63 (356)
T ss_dssp HHHHTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCSSSSCH-----------HHHT-----TTTTTSEEEEC
T ss_pred hhhhCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCCCccHHH-----------Hhhh-----hcccCCeEEEe
Confidence 368999999999999999999999999998 6899999987654211 1111 12357999999
Q ss_pred CCCCCcCCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCC
Q psy11859 293 DILQANLGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPD 367 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~ 367 (851)
||+|++ .+..+.+ .+|+|+|+||..... ..+.....+|+.||.+++++|.+.+....++++||+++++.
T Consensus 64 Dl~d~~------~l~~~~~~~~~~~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~ 137 (356)
T d1rkxa_ 64 DIRDQN------KLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDN 137 (356)
T ss_dssp CTTCHH------HHHHHHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCC
T ss_pred eccChH------hhhhhhhhchhhhhhhhhccccccccccCCccccccccccchhhhhhhhccccccccccccccccccc
Confidence 999986 6666655 679999999987654 35678899999999999999999877788888888766554
Q ss_pred Cc---ccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----------CCCEE
Q psy11859 368 QK---VLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----------KLPVV 433 (851)
Q Consensus 368 ~~---~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----------~l~~~ 433 (851)
.. +.+|+.+..|.++ |+.+|..+|..+..+.. +++++
T Consensus 138 ~~~~~~~~~~~~~~p~~~-----------------------------y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 188 (356)
T d1rkxa_ 138 KEWIWGYRENEAMGGYDP-----------------------------YSNSKGCAELVTSSYRNSFFNPANYGQHGTAVA 188 (356)
T ss_dssp CCSSSCBCTTSCBCCSSH-----------------------------HHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEE
T ss_pred cccccccccccccCCCCc-----------------------------cccccccchhhhhHHhhhcccchhccccCceEE
Confidence 33 5566666666666 99999999998876532 68899
Q ss_pred EEecccccCCCCCC----chhHhhhhcCCceEEEEcccCceeEEEeec---------C------CCCccEEEEeCCCCcc
Q psy11859 434 IVRPSIVLPSFQEP----VPGWVDSLNGPVGVLVASGKGVVRSMILND---------L------STETQVFNISSNEVEA 494 (851)
Q Consensus 434 ivRp~~V~G~~~~p----~p~~i~~~~~~~~~~~~~g~~v~~~~~~~~---------~------~~~~~iyni~~~~~~~ 494 (851)
++||++||||++.+ ++.++..+.++.+++.+.+......++..+ . ...+...+...+....
T Consensus 189 ~~r~~~vyGp~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (356)
T d1rkxa_ 189 TVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADA 268 (356)
T ss_dssp EEECCCEECTTCCCSSCHHHHHHHHHHTTCCEECSCTTCEECCEETHHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGC
T ss_pred eccCCCeeCCCcchhhHHHHHHHHHHhCCCceEEeeccccccccccccccchhhhhhhhhcccccccccccccccccccc
Confidence 99999999998744 466777777777777665543333222211 1 1123345555444478
Q ss_pred ccHHHHHHHHHHHhhcCC
Q psy11859 495 ITWGEIISRGKQLIYQYP 512 (851)
Q Consensus 495 ~t~~el~~~~~~~~~~~p 512 (851)
+++.++++.+.+..+..+
T Consensus 269 ~~~~~~~~~i~~~~~~~~ 286 (356)
T d1rkxa_ 269 TPVKNIVEQMVKYWGEGA 286 (356)
T ss_dssp EEHHHHHHHHHHHHCTTC
T ss_pred cccchhhhhhHHHhCCCc
Confidence 999999999999987543
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=99.91 E-value=1.3e-23 Score=227.88 Aligned_cols=255 Identities=20% Similarity=0.189 Sum_probs=166.9
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcC
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANL 299 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~l 299 (851)
+|||||||||||++|+++|+++| .+|+++++-.... ...++..+. ..++++++.|||++.+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g---~~V~~id~~~~~~-~~~~~~~~~--------------~~~~~~~i~~Di~~~~- 62 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQG---IDLIVFDNLSRKG-ATDNLHWLS--------------SLGNFEFVHGDIRNKN- 62 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCCSTT-HHHHHHHHH--------------TTCCCEEEECCTTCHH-
T ss_pred EEEEECCCcHHHHHHHHHHHHCc---CEEEEEECCCccc-chhHHHHhh--------------ccCCcEEEEcccCCHH-
Confidence 69999999999999999999998 6788887654432 223332221 1348999999999886
Q ss_pred CCCHHHHHHHhc--CccEEEEccccCCcch---hHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCc--ccc
Q psy11859 300 GIKDSDLLMLQE--EVSVVFNGAASLKLEA---ELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQK--VLE 372 (851)
Q Consensus 300 gls~~~~~~~~~--~vd~ViH~AA~~~~~~---~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~--~i~ 372 (851)
++..+++ ++|+|||+||.+.... ++...+++||.||.+||++|.+.+..+.++++||...++... +..
T Consensus 63 -----~l~~~~~~~~~d~Vih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~ 137 (338)
T d1orra_ 63 -----DVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYN 137 (338)
T ss_dssp -----HHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEE
T ss_pred -----HHHHHHHhcCCceEEeecccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 7777776 4699999999987654 456889999999999999999987444445555444444322 111
Q ss_pred cccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC---
Q psy11859 373 EKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP--- 447 (851)
Q Consensus 373 E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p--- 447 (851)
+.....+.... -............+.|+.+|..+|.++..+.. +....++|++++||+...+
T Consensus 138 ~~~~~~~~~~~-------------~~~~~~~~~~~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (338)
T d1orra_ 138 ETETRYTCVDK-------------PNGYDESTQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYD 204 (338)
T ss_dssp ECSSCEEETTC-------------TTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTT
T ss_pred ccccccccccc-------------ccCcccCCccccccccccccchhhhhhhhhhhccCcccccccccceeecccccccc
Confidence 11111000000 00000000111235699999999999988765 9999999999999876543
Q ss_pred ---chhHhhhh----c-CCceE-EEEcccCceeEEEeecC-------------CCCccEEEEeCCCCccccHHHHHHHHH
Q psy11859 448 ---VPGWVDSL----N-GPVGV-LVASGKGVVRSMILNDL-------------STETQVFNISSNEVEAITWGEIISRGK 505 (851)
Q Consensus 448 ---~p~~i~~~----~-~~~~~-~~~~g~~v~~~~~~~~~-------------~~~~~iyni~~~~~~~~t~~el~~~~~ 505 (851)
++.++..+ . .+.++ ++|.|. ..+.+....+ ...+++||+..+..+++++.|+++.+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~g~g~-~~r~~~~v~D~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~s~~e~~~~i~ 283 (338)
T d1orra_ 205 QGWVGWFCQKAVEIKNGINKPFTISGNGK-QVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLE 283 (338)
T ss_dssp BCHHHHHHHHHHHHHTTCCCCEEEESSSC-CEEECEEHHHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHH
T ss_pred ccccchhhHHHHHHHhccCCceEEeCCCc-eeEeeecccchhhHHHHHHhccccccCccccccccccccccHHHHHHHHH
Confidence 33444332 1 22333 344442 2233222221 235789999777668899999999999
Q ss_pred HHhhcCC
Q psy11859 506 QLIYQYP 512 (851)
Q Consensus 506 ~~~~~~p 512 (851)
+..+..+
T Consensus 284 ~~~~~~~ 290 (338)
T d1orra_ 284 DYCNIDM 290 (338)
T ss_dssp HHHTCCC
T ss_pred HHHCCCc
Confidence 9987643
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.88 E-value=5e-23 Score=217.48 Aligned_cols=211 Identities=18% Similarity=0.134 Sum_probs=164.5
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|+++|++.| +.|+.++|.+ +|++|.+
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g---~~Vi~~~r~~------------------------------------~D~~d~~ 42 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKN---VEVIPTDVQD------------------------------------LDITNVL 42 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSS---EEEEEECTTT------------------------------------CCTTCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEeechh------------------------------------ccCCCHH
Confidence 789999999999999999999988 7888887742 3677665
Q ss_pred CCCCHHHHHHHhc--CccEEEEccccCCcch---hHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC--ccc
Q psy11859 299 LGIKDSDLLMLQE--EVSVVFNGAASLKLEA---ELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ--KVL 371 (851)
Q Consensus 299 lgls~~~~~~~~~--~vd~ViH~AA~~~~~~---~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~--~~i 371 (851)
.+..+++ ++|+|||+||....+. .+..+..+|+.++.++++++.... ..++++||..+++.. .+.
T Consensus 43 ------~~~~~l~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~--~~~~~~ss~~v~~~~~~~~~ 114 (281)
T d1vl0a_ 43 ------AVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVG--AEIVQISTDYVFDGEAKEPI 114 (281)
T ss_dssp ------HHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHT--CEEEEEEEGGGSCSCCSSCB
T ss_pred ------HHHHHHHHcCCCEEEeeccccccccccccchhhccccccccccccccccccc--ccccccccceeeeccccccc
Confidence 6666665 6899999999887643 456788999999999999998764 677778887666554 367
Q ss_pred ccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhH
Q psy11859 372 EEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGW 451 (851)
Q Consensus 372 ~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~ 451 (851)
.|..++.|.+. |+.+|..+|.++.++ +.+.+|+||++|||++...++.+
T Consensus 115 ~e~~~~~~~~~-----------------------------~~~~k~~~e~~~~~~--~~~~~i~R~~~vyG~~~~~~~~~ 163 (281)
T d1vl0a_ 115 TEFDEVNPQSA-----------------------------YGKTKLEGENFVKAL--NPKYYIVRTAWLYGDGNNFVKTM 163 (281)
T ss_dssp CTTSCCCCCSH-----------------------------HHHHHHHHHHHHHHH--CSSEEEEEECSEESSSSCHHHHH
T ss_pred cccccccchhh-----------------------------hhhhhhHHHHHHHHh--CCCccccceeEEeCCCcccccch
Confidence 78777777666 999999999999776 58999999999999998888888
Q ss_pred hhhhcCCceEEEEcccCceeEEEeecC----------CCCccEEEEeCCCCccccHHHHHHHHHHHhhcC
Q psy11859 452 VDSLNGPVGVLVASGKGVVRSMILNDL----------STETQVFNISSNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 452 i~~~~~~~~~~~~~g~~v~~~~~~~~~----------~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
+..+.......+. ++ ..+.+....+ ....++||++++ +++|+.|+++.+.+.+|..
T Consensus 164 ~~~~~~~~~~~~~-~~-~~~~~i~v~D~~~~~~~~~~~~~~g~~~~~~~--~~~s~~e~~~~i~~~~g~~ 229 (281)
T d1vl0a_ 164 INLGKTHDELKVV-HD-QVGTPTSTVDLARVVLKVIDEKNYGTFHCTCK--GICSWYDFAVEIFRLTGID 229 (281)
T ss_dssp HHHHHHCSEEEEE-SS-CEECCEEHHHHHHHHHHHHHHTCCEEEECCCB--SCEEHHHHHHHHHHHHCCC
T ss_pred hhhhccCCceeec-CC-ceeccchhhhhhhhhhhhhhhcccCceeEeCC--CccchHHHHHHHHHHhCCC
Confidence 8776554444433 33 2333332222 344569999998 6899999999999999864
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.5e-22 Score=208.49 Aligned_cols=161 Identities=20% Similarity=0.198 Sum_probs=133.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++|+|||||||||||++|+++|++.+ .+.+|+++.|.+.... ......+..+.+|+.
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g-~~~~v~~~~R~~~~~~---------------------~~~~~~i~~~~~D~~ 69 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQG-LFSKVTLIGRRKLTFD---------------------EEAYKNVNQEVVDFE 69 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHT-CCSEEEEEESSCCCCC---------------------SGGGGGCEEEECCGG
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCC-CCCEEEEEecChhhhc---------------------ccccceeeeeeeccc
Confidence 567899999999999999999999996 5569999999765421 112247888899999
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCccccccc
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKL 375 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~ 375 (851)
+.+ ++..+++++|+|||+|+......+..++.++|+.++.+++++|.+.+ +++|||+||..++..
T Consensus 70 ~~~------~~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-v~~fi~~Ss~~~~~~-------- 134 (232)
T d2bkaa1 70 KLD------DYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGG-CKHFNLLSSKGADKS-------- 134 (232)
T ss_dssp GGG------GGGGGGSSCSEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTT-CCEEEEECCTTCCTT--------
T ss_pred ccc------cccccccccccccccccccccccchhhhhhhcccccceeeecccccC-ccccccCCccccccC--------
Confidence 876 78888899999999999887777778889999999999999999986 999999999755321
Q ss_pred CCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCC-EEEEecccccCCCCCC
Q psy11859 376 YPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLP-VVIVRPSIVLPSFQEP 447 (851)
Q Consensus 376 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~-~~ivRp~~V~G~~~~p 447 (851)
+ ++.|+.+|+.+|..+.+. +++ ++|+|||.|+|++...
T Consensus 135 ---~-----------------------------~~~Y~~~K~~~E~~l~~~--~~~~~~IlRP~~i~G~~~~~ 173 (232)
T d2bkaa1 135 ---S-----------------------------NFLYLQVKGEVEAKVEEL--KFDRYSVFRPGVLLCDRQES 173 (232)
T ss_dssp ---C-----------------------------SSHHHHHHHHHHHHHHTT--CCSEEEEEECCEEECTTGGG
T ss_pred ---c-----------------------------cchhHHHHHHhhhccccc--cccceEEecCceeecCCCcC
Confidence 2 244999999999988764 455 8999999999997654
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=99.85 E-value=2e-21 Score=206.43 Aligned_cols=215 Identities=16% Similarity=0.147 Sum_probs=151.4
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|||||||||||++|++.|++.| .++.+.+..+. +.+|++|++
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g----~~v~~~~~~~~--------------------------------~~~Dl~~~~ 44 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVG----NLIALDVHSKE--------------------------------FCGDFSNPK 44 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTS----EEEEECTTCSS--------------------------------SCCCTTCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC----CEEEEECCCcc--------------------------------ccCcCCCHH
Confidence 689999999999999999999886 34555554322 347898776
Q ss_pred CCCCHHHHHHHhc--CccEEEEccccCCcc---hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC--ccc
Q psy11859 299 LGIKDSDLLMLQE--EVSVVFNGAASLKLE---AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ--KVL 371 (851)
Q Consensus 299 lgls~~~~~~~~~--~vd~ViH~AA~~~~~---~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~--~~i 371 (851)
.+..+++ ++|+|||+||...++ ..+...+.+|+.++.+|+++|++.+ .+++++||+.+++.. .+.
T Consensus 45 ------~~~~~i~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~~ss~~~~~~~~~~~~ 116 (298)
T d1n2sa_ 45 ------GVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETG--AWVVHYSTDYVFPGTGDIPW 116 (298)
T ss_dssp ------HHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTT--CEEEEEEEGGGSCCCTTCCB
T ss_pred ------HHHHHHHHcCCCEEEEecccccccccccCccccccccccccccchhhhhccc--cccccccccccccCCCCCCC
Confidence 6777665 579999999987764 4566789999999999999998775 568888887665543 378
Q ss_pred ccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEeccccc-CCCCCCchh
Q psy11859 372 EEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVL-PSFQEPVPG 450 (851)
Q Consensus 372 ~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~-G~~~~p~p~ 450 (851)
+|+.++.|.++ |+.+|..+|..+..+.. ...++|++..+ |++......
T Consensus 117 ~E~~~~~p~~~-----------------------------y~~~k~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 165 (298)
T d1n2sa_ 117 QETDATSPLNV-----------------------------YGKTKLAGEKALQDNCP--KHLIFRTSWVYAGKGNNFAKT 165 (298)
T ss_dssp CTTSCCCCSSH-----------------------------HHHHHHHHHHHHHHHCS--SEEEEEECSEECSSSCCHHHH
T ss_pred ccccccCCCch-----------------------------HhhhhhhhhhhHHhhhc--ccccccccceeeccCCccchh
Confidence 88887777766 99999999999987653 34555555555 444443333
Q ss_pred HhhhhcCCceEEEEcc--------cCceeEEEeec-----CCCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 451 WVDSLNGPVGVLVASG--------KGVVRSMILND-----LSTETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 451 ~i~~~~~~~~~~~~~g--------~~v~~~~~~~~-----~~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
+...+.....+..... .|+++++.... ....+++||++++ ..+++.++++.+.+..+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~i~~~~~~~~~~~~~n~~~~--~~~~~~~~~~~i~~~~~~ 236 (298)
T d1n2sa_ 166 MLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVAG--GTTTWHDYAALVFDEARK 236 (298)
T ss_dssp HHHHHHHCSEEEEECSCEECCEEHHHHHHHHHHHHHHHHHCGGGCEEEECCCB--SCEEHHHHHHHHHHHHHH
T ss_pred hhhhhcccceeecccceeecccccchHHHHHHHHHhhhhccccccccccccCC--CceecHHHHHHHHhhhhc
Confidence 4444544444444322 11221111110 1346789999988 679999999999887765
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1.6e-21 Score=207.99 Aligned_cols=227 Identities=18% Similarity=0.228 Sum_probs=143.8
Q ss_pred EEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcCC
Q psy11859 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLG 300 (851)
Q Consensus 221 VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~lg 300 (851)
|||||||||||++|+++|++.|. +.|+++++-..+.. ..++.+ ....|+.+..
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~--~~V~~~d~~~~~~~-~~~~~~----------------------~~~~~~~~~~-- 54 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGI--TDILVVDNLKDGTK-FVNLVD----------------------LNIADYMDKE-- 54 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTC--CCEEEEECCSSGGG-GHHHHT----------------------SCCSEEEEHH--
T ss_pred EEEecCccHHHHHHHHHHHhCCC--CeEEEEECCCCcch-hhcccc----------------------cchhhhccch--
Confidence 89999999999999999999984 46777765443311 111100 0011111111
Q ss_pred CCHHHHH-----HHhcCccEEEEccccCCcch-hHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCC-c-ccc
Q psy11859 301 IKDSDLL-----MLQEEVSVVFNGAASLKLEA-ELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ-K-VLE 372 (851)
Q Consensus 301 ls~~~~~-----~~~~~vd~ViH~AA~~~~~~-~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~-~-~i~ 372 (851)
.... .....+++|+|+||...... +......+|+.|+.+++++++..+ ++ ||+.||..+++.. . ..+
T Consensus 55 ---~~~~~~~~~~~~~~~~~i~~~aa~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-i~-~v~~ss~~~~~~~~~~~~~ 129 (307)
T d1eq2a_ 55 ---DFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE-IP-FLYASSAATYGGRTSDFIE 129 (307)
T ss_dssp ---HHHHHHHTTCCCSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHT-CC-EEEEEEGGGGTTCCSCBCS
T ss_pred ---HHHHHHhhhhcccchhhhhhhccccccccccccccccccccccccccccccccc-cc-ccccccccccccccccccc
Confidence 0111 12346899999999776543 455678899999999999998875 65 6666665554433 2 445
Q ss_pred cccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCC---
Q psy11859 373 EKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQEP--- 447 (851)
Q Consensus 373 E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--~l~~~ivRp~~V~G~~~~p--- 447 (851)
|+.+..|.++ |+.+|.++|.++..+.. +++++++||++||||++.+
T Consensus 130 ~~~~~~~~~~-----------------------------Y~~~K~~~e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~ 180 (307)
T d1eq2a_ 130 SREYEKPLNV-----------------------------YGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGS 180 (307)
T ss_dssp SGGGCCCSSH-----------------------------HHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGG
T ss_pred cccccccccc-----------------------------cccccchhhhhccccccccccccccccceeEeecccccccc
Confidence 5555555555 99999999999999865 9999999999999997643
Q ss_pred ----chhHhhhhcCCceEEEE-cccCceeEEEeecC----------CCCccEEEEeCCCCccccHHHHHHHHHHHhhc
Q psy11859 448 ----VPGWVDSLNGPVGVLVA-SGKGVVRSMILNDL----------STETQVFNISSNEVEAITWGEIISRGKQLIYQ 510 (851)
Q Consensus 448 ----~p~~i~~~~~~~~~~~~-~g~~v~~~~~~~~~----------~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~ 510 (851)
++.++..+..+....+. ++....+.+....+ ....++||+++| .++|+.|+++.+.+..+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~si~~i~~~i~~~~~~ 256 (307)
T d1eq2a_ 181 MASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVSGIFNLGTG--RAESFQAVADATLAYHKK 256 (307)
T ss_dssp GSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHCCCEEEEESCS--CCBCHHHHHHHC------
T ss_pred ccccccccccccccccceeeecCccceeeeeeecccHHHHHHHHhhhccccccccccc--cchhHHHHHHHHHHhcCC
Confidence 34455555554443332 23334444443322 345679999999 689999999999877553
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=4.6e-19 Score=178.49 Aligned_cols=155 Identities=19% Similarity=0.204 Sum_probs=122.3
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
..|+|+|||||||||++++++|+++| .+|.+++|...... .....+++++.||++|
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g---~~V~~~~R~~~~~~---------------------~~~~~~~~~~~gD~~d 57 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAG---YEVTVLVRDSSRLP---------------------SEGPRPAHVVVGDVLQ 57 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCGGGSC---------------------SSSCCCSEEEESCTTS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCc---CEEEEEEcChhhcc---------------------cccccccccccccccc
Confidence 46899999999999999999999998 78999999654311 0123478999999999
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccC
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLY 376 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~ 376 (851)
++ ++..+++++|+|||+++....... ..++..|+++++++|++.+ +++||++||+.++.+....
T Consensus 58 ~~------~l~~al~~~d~vi~~~g~~~~~~~----~~~~~~~~~~l~~aa~~~~-v~r~i~~ss~~~~~~~~~~----- 121 (205)
T d1hdoa_ 58 AA------DVDKTVAGQDAVIVLLGTRNDLSP----TTVMSEGARNIVAAMKAHG-VDKVVACTSAFLLWDPTKV----- 121 (205)
T ss_dssp HH------HHHHHHTTCSEEEECCCCTTCCSC----CCHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTSCTTCS-----
T ss_pred hh------hHHHHhcCCCEEEEEeccCCchhh----hhhhHHHHHHHHHHHHhcC-CCeEEEEeeeeccCCCccc-----
Confidence 87 899999999999999987543322 3567889999999999986 9999999998766543210
Q ss_pred CCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccC
Q psy11859 377 PSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLP 442 (851)
Q Consensus 377 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G 442 (851)
+... ..|...|..+|+++++ .+++++|+||+.+++
T Consensus 122 ~~~~-----------------------------~~~~~~~~~~e~~l~~--~~~~~tiirp~~~~~ 156 (205)
T d1hdoa_ 122 PPRL-----------------------------QAVTDDHIRMHKVLRE--SGLKYVAVMPPHIGD 156 (205)
T ss_dssp CGGG-----------------------------HHHHHHHHHHHHHHHH--TCSEEEEECCSEEEC
T ss_pred cccc-----------------------------cccchHHHHHHHHHHh--cCCceEEEecceecC
Confidence 1111 2388999999998875 489999999998875
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.77 E-value=3.5e-19 Score=180.17 Aligned_cols=153 Identities=22% Similarity=0.226 Sum_probs=115.0
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
.|+|||||||||||++|+++|++++ ...+|.++.|..... .+++....+|+.+
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~-~~~~v~~~~r~~~~~-------------------------~~~~~~~~~d~~~- 54 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEP-TLAKVIAPARKALAE-------------------------HPRLDNPVGPLAE- 54 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCT-TCCEEECCBSSCCCC-------------------------CTTEECCBSCHHH-
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC-CeEEEEEEeCCchhh-------------------------cccccccccchhh-
Confidence 5899999999999999999999986 334788888765331 1244444444432
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccC
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLY 376 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~ 376 (851)
....+...+|+|||++|..... ....+..++|+.++.+++++|++.+ +++|+++||+.+++
T Consensus 55 -------~~~~~~~~~d~vi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-v~~~i~~Ss~~~~~---------- 116 (212)
T d2a35a1 55 -------LLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMG-ARHYLVVSALGADA---------- 116 (212)
T ss_dssp -------HGGGCCSCCSEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTT-CCEEEEECCTTCCT----------
T ss_pred -------hhhccccchheeeeeeeeeccccccccccccchhhhhhhccccccccc-cccccccccccccc----------
Confidence 1223445689999999876433 3445788999999999999999885 99999999976543
Q ss_pred CCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCC-EEEEecccccCCCCCC
Q psy11859 377 PSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLP-VVIVRPSIVLPSFQEP 447 (851)
Q Consensus 377 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~-~~ivRp~~V~G~~~~p 447 (851)
.+. +.|+.+|+.+|+.+.+. +++ ++|+||+.|||+.+..
T Consensus 117 -~~~-----------------------------~~y~~~K~~~E~~l~~~--~~~~~~I~Rp~~v~G~~~~~ 156 (212)
T d2a35a1 117 -KSS-----------------------------IFYNRVKGELEQALQEQ--GWPQLTIARPSLLFGPREEF 156 (212)
T ss_dssp -TCS-----------------------------SHHHHHHHHHHHHHTTS--CCSEEEEEECCSEESTTSCE
T ss_pred -ccc-----------------------------cchhHHHHHHhhhcccc--ccccceeeCCcceeCCcccc
Confidence 222 34999999999988643 565 9999999999997654
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.77 E-value=5.1e-20 Score=188.74 Aligned_cols=222 Identities=16% Similarity=0.149 Sum_probs=149.1
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
++|||||||||||++|+++|++.|+.| .|+.+.|.... .. ....+++++.+|+.+++
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v-~v~~~~R~~~~------~~----------------~~~~~~~~~~~d~~~~~ 60 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQG------KE----------------KIGGEADVFIGDITDAD 60 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHTTTTC-EEEEEESCHHH------HH----------------HTTCCTTEEECCTTSHH
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCcE-EEEEEcCCHHH------HH----------------hccCCcEEEEeeecccc
Confidence 689999999999999999999998764 67778885421 11 12247889999999887
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcc----------------hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeee
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLE----------------AELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTA 362 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~----------------~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa 362 (851)
++..+++++|+|||+||..... ........+|+.|+.++++.+.... ...+.+.|+.
T Consensus 61 ------~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~ 133 (252)
T d2q46a1 61 ------SINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAG-VKHIVVVGSM 133 (252)
T ss_dssp ------HHHHHHTTCSEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHT-CSEEEEEEET
T ss_pred ------ccccccccceeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeecccccccc-cccccccccc
Confidence 8888999999999999875432 1233557899999999999998875 7888888884
Q ss_pred eeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccC
Q psy11859 363 FCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLP 442 (851)
Q Consensus 363 ~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G 442 (851)
.+..... |... .....|...+.+.+.+... .+++++|+||++|||
T Consensus 134 ~~~~~~~---------~~~~------------------------~~~~~~~~~~~~~~~~~~~--~~~~~~ilRp~~v~g 178 (252)
T d2q46a1 134 GGTNPDH---------PLNK------------------------LGNGNILVWKRKAEQYLAD--SGTPYTIIRAGGLLD 178 (252)
T ss_dssp TTTCTTC---------GGGG------------------------GGGCCHHHHHHHHHHHHHH--SSSCEEEEEECEEEC
T ss_pred ccCCCCc---------cccc------------------------ccccchhhhhhhhhhhhhc--ccccceeecceEEEC
Confidence 4332211 1110 0013366666666655443 389999999999999
Q ss_pred CCCCCchhHhhh----hcCCceEEEEcccCceeEEEeecC--CCCccEEEEeCCC-CccccHHHHHHHHHHH
Q psy11859 443 SFQEPVPGWVDS----LNGPVGVLVASGKGVVRSMILNDL--STETQVFNISSNE-VEAITWGEIISRGKQL 507 (851)
Q Consensus 443 ~~~~p~p~~i~~----~~~~~~~~~~~g~~v~~~~~~~~~--~~~~~iyni~~~~-~~~~t~~el~~~~~~~ 507 (851)
+.....+.+... ..+....+ ..+|+++++....+ ...+++||++++. ....++.|+.+.+.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~i--~~~Dva~a~~~~l~~~~~~g~~~~i~~~~~~~~~~~~~~~~lf~~i 248 (252)
T d2q46a1 179 KEGGVRELLVGKDDELLQTDTKTV--PRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQV 248 (252)
T ss_dssp SCTTSSCEEEESTTGGGGSSCCEE--EHHHHHHHHHHHTTCGGGTTEEEEEEECCTTTSCCCCCHHHHHTTC
T ss_pred CCcchhhhhhccCcccccCCCCeE--EHHHHHHHHHHHhCCccccCcEEEEeeCCCCCChhHHHHHHHHHHH
Confidence 987654332221 12222222 23567776655443 2356899998752 2345566766655443
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.77 E-value=7.1e-19 Score=186.34 Aligned_cols=222 Identities=15% Similarity=0.173 Sum_probs=152.2
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
+.|+|||||||||||++|+++|++.| .+|++++|........+....+ ..+ ....++++.+|+.+
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G---~~V~~l~R~~~~~~~~~~~~~~------~~~------~~~~~~~~~~d~~~ 66 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLG---HPTFLLVRESTASSNSEKAQLL------ESF------KASGANIVHGSIDD 66 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTT---CCEEEECCCCCTTTTHHHHHHH------HHH------HTTTCEEECCCTTC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CeEEEEECCCccccchhHHHHH------Hhh------ccCCcEEEEeeccc
Confidence 35789999999999999999999998 6789999987665433332211 111 12368899999998
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccC
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLY 376 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~ 376 (851)
.. .....+++++.|+|+++.. |+.++.++++++...+ ++.+++.||.....+..
T Consensus 67 ~~------~~~~~~~~~~~vi~~~~~~------------~~~~~~~~~~a~~~~~-~~~~~~~s~~~~~~~~~------- 120 (307)
T d1qyca_ 67 HA------SLVEAVKNVDVVISTVGSL------------QIESQVNIIKAIKEVG-TVKRFFPSEFGNDVDNV------- 120 (307)
T ss_dssp HH------HHHHHHHTCSEEEECCCGG------------GSGGGHHHHHHHHHHC-CCSEEECSCCSSCTTSC-------
T ss_pred ch------hhhhhhhhceeeeeccccc------------ccchhhHHHHHHHHhc-cccceeeeccccccccc-------
Confidence 86 7778888999999999864 4456677888888885 78888888854332211
Q ss_pred CCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhHhhhhc
Q psy11859 377 PSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDSLN 456 (851)
Q Consensus 377 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~i~~~~ 456 (851)
.+..+ ...|...+..+|..+.+. +++++|+||++|||+...++..+.....
T Consensus 121 -~~~~~--------------------------~~~~~~~~~~~~~~~~~~--~~~~~i~r~~~v~g~~~~~~~~~~~~~~ 171 (307)
T d1qyca_ 121 -HAVEP--------------------------AKSVFEVKAKVRRAIEAE--GIPYTYVSSNCFAGYFLRSLAQAGLTAP 171 (307)
T ss_dssp -CCCTT--------------------------HHHHHHHHHHHHHHHHHH--TCCBEEEECCEEHHHHTTTTTCTTCSSC
T ss_pred -ccccc--------------------------ccccccccccccchhhcc--CCCceecccceecCCCccchhhhhhhhh
Confidence 11111 123666777777776654 7999999999999998776666555543
Q ss_pred CCc-eEEEEcccCceeEEEee----------cC---CCCccEEEEeCCCCccccHHHHHHHHHHHhhcC
Q psy11859 457 GPV-GVLVASGKGVVRSMILN----------DL---STETQVFNISSNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 457 ~~~-~~~~~~g~~v~~~~~~~----------~~---~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
... ....+.+.. .+.+... .+ ...+.+||++++ +++|+.|+++.+.+..|..
T Consensus 172 ~~~~~~~~~~~~~-~~~~i~v~Dva~~~~~~l~~~~~~~~~~~~~~~~--~~~s~~ei~~~~~~~~G~~ 237 (307)
T d1qyca_ 172 PRDKVVILGDGNA-RVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPA--NTLSLNELVALWEKKIDKT 237 (307)
T ss_dssp CSSEEEEETTSCC-EEEEECHHHHHHHHHTTSSCGGGTTEEEECCCGG--GEEEHHHHHHHHHHHTTSC
T ss_pred hcccceeeecccc-cccCCcHHHHHHHHHHHhcChhhcCceeEEeCCC--CccCHHHHHHHHHHHHCCC
Confidence 333 333343332 2333222 11 122346777777 6899999999999999864
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.75 E-value=2.2e-18 Score=183.63 Aligned_cols=226 Identities=16% Similarity=0.173 Sum_probs=152.1
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
.++|||||||||||++|+++|++.| ..|++++|+........ ...+ ..+ ...+++++.||++|.
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G---~~V~~~~R~~~~~~~~~-~~~~------~~~------~~~~v~~v~~d~~d~ 66 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLG---HPTYVLFRPEVVSNIDK-VQML------LYF------KQLGAKLIEASLDDH 66 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT---CCEEEECCSCCSSCHHH-HHHH------HHH------HTTTCEEECCCSSCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC---CEEEEEECCCcccchhH-HHHH------hhh------ccCCcEEEEeecccc
Confidence 4679999999999999999999998 67899999876654321 1110 000 124789999999988
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccCC
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYP 377 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~~ 377 (851)
+ .+...+.+++++||+++.... ..|+.++.+++++|.+.+ ..++++.||..++.+.. .
T Consensus 67 ~------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~a~~~~-~~~~v~~Ss~g~~~~~~-------~ 124 (312)
T d1qyda_ 67 Q------RLVDALKQVDVVISALAGGVL--------SHHILEQLKLVEAIKEAG-NIKRFLPSEFGMDPDIM-------E 124 (312)
T ss_dssp H------HHHHHHTTCSEEEECCCCSSS--------STTTTTHHHHHHHHHHSC-CCSEEECSCCSSCTTSC-------C
T ss_pred h------hhhhhccCcchhhhhhhhccc--------ccchhhhhHHHHHHHHhc-CCcEEEEeeccccCCCc-------c
Confidence 7 888899999999999986533 346778889999999886 56677777754433211 1
Q ss_pred CCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCchhHhhhh--
Q psy11859 378 SPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDSL-- 455 (851)
Q Consensus 378 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p~p~~i~~~-- 455 (851)
.+..+ ...|..+|..+|..+.. .+++++++||+.++|+....++.+....
T Consensus 125 ~~~~~--------------------------~~~~~~~~~~~~~~~~~--~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~ 176 (312)
T d1qyda_ 125 HALQP--------------------------GSITFIDKRKVRRAIEA--ASIPYTYVSSNMFAGYFAGSLAQLDGHMMP 176 (312)
T ss_dssp CCCSS--------------------------TTHHHHHHHHHHHHHHH--TTCCBCEEECCEEHHHHTTTSSCTTCCSSC
T ss_pred cccch--------------------------hhhhhHHHHHHHHhhcc--cccceEEeccceeecCCccchhhHHHHhhh
Confidence 11222 24477777777776543 3899999999999998765544433332
Q ss_pred cCCceEEEEcc---------cCceeEEEeecC--CCCcc-EEEEeCCCCccccHHHHHHHHHHHhhcC
Q psy11859 456 NGPVGVLVASG---------KGVVRSMILNDL--STETQ-VFNISSNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 456 ~~~~~~~~~~g---------~~v~~~~~~~~~--~~~~~-iyni~~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
.+....+++.| +|+++++..+.. ...++ +|+++++ +++|++|+++.+.+..|..
T Consensus 177 ~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~--~~~s~~e~~~~~~~~~g~~ 242 (312)
T d1qyda_ 177 PRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRPPM--NILSQKEVIQIWERLSEQN 242 (312)
T ss_dssp CSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCGGGSSSEEECCCGG--GEEEHHHHHHHHHHHHTCC
T ss_pred cccccccccccccccceeeHHHHHHHHHHHhcCccccCceEEEeCCC--cCCCHHHHHHHHHHHHCCC
Confidence 22222222322 344444332222 22334 5667666 6799999999999998863
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.62 E-value=2.1e-15 Score=163.97 Aligned_cols=218 Identities=16% Similarity=0.127 Sum_probs=143.5
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
+.|+|||||||||||++|+++|++.| +.|+++.|+..+... ..+ ...++++++.||+.|
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G---~~V~~l~R~~~~~~~----~~~--------------~~~~~v~~~~gD~~d 60 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVG---HHVRAQVHSLKGLIA----EEL--------------QAIPNVTLFQGPLLN 60 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTT---CCEEEEESCSCSHHH----HHH--------------HTSTTEEEEESCCTT
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCC---CeEEEEECCcchhhh----hhh--------------cccCCCEEEEeeCCC
Confidence 46899999999999999999999998 678999997654211 111 112479999999998
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeeeeeCCCcccccccC
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLY 376 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~~~~~~~~i~E~~~ 376 (851)
+. ..+..++.+++++++...... ..|+.++.+++++|.+.+ ++++|+.||...... ..
T Consensus 61 ~~-----~~~~~a~~~~~~~~~~~~~~~---------~~~~~~~~~~~~aa~~ag-v~~~v~~Ss~~~~~~-------~~ 118 (350)
T d1xgka_ 61 NV-----PLMDTLFEGAHLAFINTTSQA---------GDEIAIGKDLADAAKRAG-TIQHYIYSSMPDHSL-------YG 118 (350)
T ss_dssp CH-----HHHHHHHTTCSEEEECCCSTT---------SCHHHHHHHHHHHHHHHS-CCSEEEEEECCCGGG-------TS
T ss_pred cH-----HHHHHHhcCCceEEeeccccc---------chhhhhhhHHHHHHHHhC-CCceEEEeecccccc-------CC
Confidence 64 246678889999998764321 246778899999999996 778888888532211 11
Q ss_pred CCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCC-chhHhhh-
Q psy11859 377 PSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEP-VPGWVDS- 454 (851)
Q Consensus 377 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~~l~~~ivRp~~V~G~~~~p-~p~~i~~- 454 (851)
..+. ..|..+|...|..+.+. +++++++||+..++....+ .+.+...
T Consensus 119 ~~~~-----------------------------~~~~~~k~~~~~~~~~~--~~~~~~vr~~~~~~~~~~~~~~~~~~~~ 167 (350)
T d1xgka_ 119 PWPA-----------------------------VPMWAPKFTVENYVRQL--GLPSTFVYAGIYNNNFTSLPYPLFQMEL 167 (350)
T ss_dssp SCCC-----------------------------CTTTHHHHHHHHHHHTS--SSCEEEEEECEEGGGCBSSSCSSCBEEE
T ss_pred cccc-----------------------------hhhhhhHHHHHHHHHhh--ccCceeeeeceeeccccccccccccccc
Confidence 1122 33788999888876643 6899999999887754332 1111111
Q ss_pred hcCCceEEEE-c-c----------cCceeEEEeecC----CCCccEEEEeCCCCccccHHHHHHHHHHHhhcC
Q psy11859 455 LNGPVGVLVA-S-G----------KGVVRSMILNDL----STETQVFNISSNEVEAITWGEIISRGKQLIYQY 511 (851)
Q Consensus 455 ~~~~~~~~~~-~-g----------~~v~~~~~~~~~----~~~~~iyni~~~~~~~~t~~el~~~~~~~~~~~ 511 (851)
+..+...... . + +|+.+++..... ...|++|++++. .+|+.|+++.+.+.+|+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~~l~~~~~~~~G~~~~~~g~---~~T~~eia~~l~~~~G~~ 237 (350)
T d1xgka_ 168 MPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQKWNGHRIALTFE---TLSPVQVCAAFSRALNRR 237 (350)
T ss_dssp CTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCHHHHTTCEEEECSE---EECHHHHHHHHHHHHTSC
T ss_pred cccccceeeecccCCCcceEEEeHHHHHHHHHHHHhCChhhcCCeEEEEeCC---cCCHHHHHHHHHHHHCCc
Confidence 1111111111 1 1 122222111111 125778988753 489999999999999963
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.41 E-value=9.5e-13 Score=134.54 Aligned_cols=155 Identities=20% Similarity=0.209 Sum_probs=118.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||++-||+.++++|++.| .+|++..|..... +++..+.+|++
T Consensus 5 l~gK~~lITGas~GIG~aia~~la~~G---a~V~~~~r~~~~~--------------------------~~~~~~~~Dv~ 55 (237)
T d1uzma1 5 FVSRSVLVTGGNRGIGLAIAQRLAADG---HKVAVTHRGSGAP--------------------------KGLFGVEVDVT 55 (237)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSSCCC--------------------------TTSEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCcchh--------------------------cCceEEEEecC
Confidence 799999999999999999999999999 7899999976542 36678999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ +++.++ .++|++||+||.... .+.++..+++|+.|+..+.+++... .+-.++|+
T Consensus 56 ~~~------~v~~~~~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~ 129 (237)
T d1uzma1 56 DSD------AVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIF 129 (237)
T ss_dssp CHH------HHHHHHHHHHHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CHH------HHHHHHHHHHHhcCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEE
Confidence 986 555443 268999999997543 2567789999999999887765431 23568999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... .|. ...|+.||+.-+.+.+..+. ++.+.
T Consensus 130 isS~~~~~~----------~~~----------------------------~~~Y~asKaal~~lt~~lA~e~~~~gIrVN 171 (237)
T d1uzma1 130 IGSVSGLWG----------IGN----------------------------QANYAASKAGVIGMARSIARELSKANVTAN 171 (237)
T ss_dssp ECCCCC---------------C----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred EcchhhccC----------Ccc----------------------------cHHHHHHHHHHHHHHHHHHhhhhcCCceee
Confidence 999655321 111 12499999988887766543 89999
Q ss_pred EEecccccCC
Q psy11859 434 IVRPSIVLPS 443 (851)
Q Consensus 434 ivRp~~V~G~ 443 (851)
.|.||.|-.+
T Consensus 172 ~I~PG~v~T~ 181 (237)
T d1uzma1 172 VVAPGYIDTD 181 (237)
T ss_dssp EEEECSBCCH
T ss_pred eeeeCcCCCh
Confidence 9999998654
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.41 E-value=1.2e-12 Score=135.85 Aligned_cols=170 Identities=24% Similarity=0.312 Sum_probs=124.8
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHH-HHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKA-RLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~-rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
.|-.+.+||||||+|-||..+++.|+++|. ..|+++.|+.......+ .++++ . ....++.++.+
T Consensus 5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga--~~vvl~~R~~~~~~~~~~~~~~l---------~----~~g~~v~~~~~ 69 (259)
T d2fr1a1 5 EWKPTGTVLVTGGTGGVGGQIARWLARRGA--PHLLLVSRSGPDADGAGELVAEL---------E----ALGARTTVAAC 69 (259)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHHTC--SEEEEEESSGGGSTTHHHHHHHH---------H----HTTCEEEEEEC
T ss_pred ccCCcCEEEEECCCcHHHHHHHHHHHHCCC--CEEEEEeCCccCHHHHHHHHHHH---------H----hcccccccccc
Confidence 455678999999999999999999999984 46888888654332222 22221 1 12247899999
Q ss_pred CCCCCcCCCCHHHHHHHhc------CccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEe
Q psy11859 293 DILQANLGIKDSDLLMLQE------EVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKMKKLVAFIHF 359 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~~------~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~v 359 (851)
|++|++ ++..+++ .+|.|||+|+..... +.+...+++|+.|+.++.++....+ ...||.+
T Consensus 70 Dv~d~~------~~~~~~~~i~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~-~~~iv~~ 142 (259)
T d2fr1a1 70 DVTDRE------SVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELD-LTAFVLF 142 (259)
T ss_dssp CTTCHH------HHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSC-CSEEEEE
T ss_pred ccchHH------HHHHhhccccccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccC-CceEeee
Confidence 999987 6666544 478999999976532 3456778999999999999886654 7889999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-CCCEEEEecc
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-KLPVVIVRPS 438 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-~l~~~ivRp~ 438 (851)
||..+.-. .|.. ..|+.+|+..|.+..+... |++++.|.||
T Consensus 143 SS~a~~~g----------~~~~----------------------------~~YaAaka~l~~la~~~~~~Gi~v~~I~pg 184 (259)
T d2fr1a1 143 SSFASAFG----------APGL----------------------------GGYAPGNAYLDGLAQQRRSDGLPATAVAWG 184 (259)
T ss_dssp EEHHHHTC----------CTTC----------------------------TTTHHHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred cchhhccC----------Cccc----------------------------HHHHHHHHhHHHHHHHHHhCCCCEEECCCC
Confidence 99654211 1111 2399999999999887755 9999999999
Q ss_pred cccCC
Q psy11859 439 IVLPS 443 (851)
Q Consensus 439 ~V~G~ 443 (851)
.|.++
T Consensus 185 ~~~~~ 189 (259)
T d2fr1a1 185 TWAGS 189 (259)
T ss_dssp CBC--
T ss_pred cccCC
Confidence 87765
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.40 E-value=9.9e-13 Score=135.34 Aligned_cols=160 Identities=19% Similarity=0.198 Sum_probs=119.9
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
.++||+||||||++=||+.+++.|++.| .+|++.+|.... .+..+++ +..++.+|+
T Consensus 2 ~l~GK~alITGas~GIG~aia~~la~~G---~~V~~~~~~~~~---~~~~~~~------------------~~~~~~~Dv 57 (248)
T d2d1ya1 2 LFAGKGVLVTGGARGIGRAIAQAFAREG---ALVALCDLRPEG---KEVAEAI------------------GGAFFQVDL 57 (248)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSTTH---HHHHHHH------------------TCEEEECCT
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHc------------------CCeEEEEeC
Confidence 4789999999999999999999999999 789999987542 2111110 345789999
Q ss_pred CCCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEE
Q psy11859 295 LQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFI 357 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV 357 (851)
++++ +.+.++ .++|++||+||.... .+.++..+++|+.|+.++.+++... .+--++|
T Consensus 58 ~~~~------~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii 131 (248)
T d2d1ya1 58 EDER------ERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIV 131 (248)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccc
Confidence 9876 555443 368999999997543 2467788999999999999988642 2246899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~ 432 (851)
++||..+... .|. ...|+.||+..+.+.+..+ + ++.+
T Consensus 132 ~isS~~~~~~----------~~~----------------------------~~~Y~asKaal~~ltk~lA~el~~~gIrV 173 (248)
T d2d1ya1 132 NVASVQGLFA----------EQE----------------------------NAAYNASKGGLVNLTRSLALDLAPLRIRV 173 (248)
T ss_dssp EECCGGGTSB----------CTT----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred cccccccccc----------ccc----------------------------cchhHHHHHHHHHHHHHHHHHhhhhCcEE
Confidence 9999655321 111 1349999999888876654 3 8999
Q ss_pred EEEecccccC
Q psy11859 433 VIVRPSIVLP 442 (851)
Q Consensus 433 ~ivRp~~V~G 442 (851)
..|-||.|-.
T Consensus 174 N~I~PG~v~T 183 (248)
T d2d1ya1 174 NAVAPGAIAT 183 (248)
T ss_dssp EEEEECSBCC
T ss_pred EEEeeCCCCC
Confidence 9999998854
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.39 E-value=8.1e-13 Score=135.55 Aligned_cols=164 Identities=19% Similarity=0.182 Sum_probs=122.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||+|-||+.+++.|++.| .+|++.+|.. ++++++ .++ ...++.++.+|++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G---~~V~~~~r~~------~~~~~~---------~~~---~~~~~~~~~~Dv~ 62 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMVAEG---AKVVFGDILD------EEGKAM---------AAE---LADAARYVHLDVT 62 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCH------HHHHHH---------HHH---TGGGEEEEECCTT
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCH------HHHHHH---------HHH---hhCcceEEEeecC
Confidence 689999999999999999999999999 7899999864 222221 111 1236889999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh-c--CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK-M--KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~-~--~~~~~fV~ 358 (851)
|++ +++.++ ..+|++||+||.... .+.++..+++|+.|+..+.+++.. + .+--++|+
T Consensus 63 ~~~------~v~~~~~~~~~~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~ 136 (244)
T d1nffa_ 63 QPA------QWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIIN 136 (244)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHH------HHHHHHHHHHHHhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEe
Confidence 986 555443 368999999997643 246788999999999999886643 2 12468999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... .|.. ..|+.||+..+.+.+..+. ++.+.
T Consensus 137 isS~~~~~~----------~~~~----------------------------~~Y~asKaal~~ltk~lA~el~~~gIrVN 178 (244)
T d1nffa_ 137 ISSIEGLAG----------TVAC----------------------------HGYTATKFAVRGLTKSTALELGPSGIRVN 178 (244)
T ss_dssp ECCGGGTSC----------CTTB----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred ccccccccc----------cccc----------------------------cchhhHHHHHHHHHHHHHHHhcccCEEEE
Confidence 999654321 1111 2499999999988876643 89999
Q ss_pred EEecccccCCC
Q psy11859 434 IVRPSIVLPSF 444 (851)
Q Consensus 434 ivRp~~V~G~~ 444 (851)
.|-||.|-.+.
T Consensus 179 ~I~PG~i~T~~ 189 (244)
T d1nffa_ 179 SIHPGLVKTPM 189 (244)
T ss_dssp EEEECCBCSGG
T ss_pred EEeeCCccChh
Confidence 99999886554
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=5.1e-13 Score=137.12 Aligned_cols=163 Identities=17% Similarity=0.193 Sum_probs=121.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+++||||++-||+.+++.|++.| .+|++.+|.+. +++++. ++ ...+...+.+|++
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G---~~Vv~~~r~~~------~l~~~~---------~~---~~~~~~~~~~Dv~ 60 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARG---AKVIGTATSEN------GAQAIS---------DY---LGANGKGLMLNVT 60 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESSHH------HHHHHH---------HH---HGGGEEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEeCCHH------HHHHHH---------HH---hCCCCcEEEEEec
Confidence 589999999999999999999999999 78899988642 222211 11 1136788999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
+++ +.+.+++ ++|++||+|+.... .+.++..+++|+.|+..+.+++... .+--++|+
T Consensus 61 ~~~------~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~ 134 (243)
T d1q7ba_ 61 DPA------SIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIIT 134 (243)
T ss_dssp CHH------HHHHHHHHHHHHTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHH------HhhhhhhhhhcccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeee
Confidence 876 5554433 69999999987543 2467788999999999999988532 12468999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ 433 (851)
+||..+... .|.. ..|+.||+..+.+.+..+ + ++.+.
T Consensus 135 isS~~~~~~----------~~~~----------------------------~~Y~asKaal~~lt~~lA~ela~~gIrVN 176 (243)
T d1q7ba_ 135 IGSVVGTMG----------NGGQ----------------------------ANYAAAKAGLIGFSKSLAREVASRGITVN 176 (243)
T ss_dssp ECCHHHHHC----------CTTC----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred ecchhhcCC----------CCCC----------------------------HHHHHHHHHHHHHHHHHHHHhCccCeEEE
Confidence 999654321 1111 249999999988887654 3 89999
Q ss_pred EEecccccCC
Q psy11859 434 IVRPSIVLPS 443 (851)
Q Consensus 434 ivRp~~V~G~ 443 (851)
.|.||.|-.+
T Consensus 177 ~I~PG~i~T~ 186 (243)
T d1q7ba_ 177 VVAPGFIETD 186 (243)
T ss_dssp EEEECSBCCH
T ss_pred EEecceEech
Confidence 9999988644
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.6e-12 Score=133.54 Aligned_cols=163 Identities=22% Similarity=0.269 Sum_probs=123.4
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
.++||+||||||+|-||+.+++.|++.| .+|++.+|.+ ++++++ .++ ...+..+.+|+
T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~G---~~V~~~~r~~------~~l~~~---------~~~----~~~~~~~~~Dv 61 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHATG---ARVVAVSRTQ------ADLDSL---------VRE----CPGIEPVCVDL 61 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCH------HHHHHH---------HHH----STTCEEEECCT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEECCH------HHHHHH---------HHh----cCCCeEEEEeC
Confidence 4799999999999999999999999999 7899998863 223222 112 13578899999
Q ss_pred CCCcCCCCHHHHHHHhc---CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh-c---CCceEEEEee
Q psy11859 295 LQANLGIKDSDLLMLQE---EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK-M---KKLVAFIHFS 360 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~---~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~-~---~~~~~fV~vS 360 (851)
+|++ +++.+++ ++|++||+|+.... .+.++..+++|+.|+..+.+++.. + +.--++|++|
T Consensus 62 ~d~~------~v~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~is 135 (244)
T d1pr9a_ 62 GDWE------ATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVS 135 (244)
T ss_dssp TCHH------HHHHHHTTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred CCHH------HHHHHHHHhCCceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecc
Confidence 9886 6666654 68999999997643 246778899999999998887654 2 2346899999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~iv 435 (851)
|..+... .|.. ..|+.||+.-+.+.+..+ + ++.+..|
T Consensus 136 S~~~~~~----------~~~~----------------------------~~Y~asKaal~~lt~~lA~el~~~gIrvN~I 177 (244)
T d1pr9a_ 136 SQCSQRA----------VTNH----------------------------SVYCSTKGALDMLTKVMALELGPHKIRVNAV 177 (244)
T ss_dssp CGGGTSC----------CTTB----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred ccccccc----------ccch----------------------------hhhhhhHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 9655321 1111 249999999998887654 3 8999999
Q ss_pred ecccccCC
Q psy11859 436 RPSIVLPS 443 (851)
Q Consensus 436 Rp~~V~G~ 443 (851)
.||.|-.+
T Consensus 178 ~PG~v~T~ 185 (244)
T d1pr9a_ 178 NPTVVMTS 185 (244)
T ss_dssp EECCBCSH
T ss_pred eeCcCcCh
Confidence 99988754
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.37 E-value=6.1e-12 Score=128.84 Aligned_cols=165 Identities=13% Similarity=0.096 Sum_probs=121.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||++=||+.++++|++.| .+|++.+|.. +++++..+ + -++.++.+|++
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~G---~~V~~~~r~~------~~l~~~~~---------~-----~~~~~~~~Dv~ 59 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKEG---ARLVACDIEE------GPLREAAE---------A-----VGAHPVVMDVA 59 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCH------HHHHHHHH---------T-----TTCEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCH------HHHHHHHH---------H-----cCCeEEEEecC
Confidence 589999999999999999999999999 7899999863 23332211 1 15678999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
+++ +++.++ .++|++||+||.... .+.++..+++|+.|+..+.+++... .+-..++.
T Consensus 60 ~~~------~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~ 133 (242)
T d1ulsa_ 60 DPA------SVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVL 133 (242)
T ss_dssp CHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CHH------HHHHHHHHHHHhcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeee
Confidence 986 555443 368999999997543 2467789999999999999887642 13456677
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||+...+ .|. ...|+.||+.-+.+.+..+. ++.+.
T Consensus 134 ~ss~~~~~-----------~~~----------------------------~~~Y~asKaal~~ltk~lA~ela~~gIrVN 174 (242)
T d1ulsa_ 134 TASRVYLG-----------NLG----------------------------QANYAASMAGVVGLTRTLALELGRWGIRVN 174 (242)
T ss_dssp ECCGGGGC-----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred eccccccC-----------CCC----------------------------CcchHHHHHHHHHHHHHHHHHHhhhCcEEE
Confidence 77743221 111 12499999999888876543 89999
Q ss_pred EEecccccCCCCCCc
Q psy11859 434 IVRPSIVLPSFQEPV 448 (851)
Q Consensus 434 ivRp~~V~G~~~~p~ 448 (851)
.|-||.|-.+.....
T Consensus 175 ~I~PG~v~T~~~~~~ 189 (242)
T d1ulsa_ 175 TLAPGFIETRMTAKV 189 (242)
T ss_dssp EEEECSBCCTTTSSS
T ss_pred EEeeCcccChhhhcC
Confidence 999999976654443
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.37 E-value=1.4e-12 Score=134.54 Aligned_cols=163 Identities=15% Similarity=0.123 Sum_probs=122.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||++=||+.+++.|++.| .+|++.+|.. +++.+.. + +...++.++.+|++
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~G---a~V~~~~r~~------~~~~~~~---------~---~~~~~~~~~~~Dv~ 61 (254)
T d1hdca_ 3 LSGKTVIITGGARGLGAEAARQAVAAG---ARVVLADVLD------EEGAATA---------R---ELGDAARYQHLDVT 61 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCH------HHHHHHH---------H---TTGGGEEEEECCTT
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCC---CEEEEEECCH------HHHHHHH---------H---HhCCceEEEEcccC
Confidence 689999999999999999999999998 7899999864 2232221 1 11247889999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
+++ +.+.++ ..+|++||+|+.... .+.++..+++|+.|+..+.+++... .+--++|+
T Consensus 62 ~~~------~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~ 135 (254)
T d1hdca_ 62 IEE------DWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVN 135 (254)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecc
Confidence 886 665554 368999999997543 2467788999999999999888532 23579999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... .|. ...|+.||+..+.+.+..+. ++.+.
T Consensus 136 isS~~~~~~----------~~~----------------------------~~~Y~asKaal~~lt~~lA~e~a~~gIrVN 177 (254)
T d1hdca_ 136 ISSAAGLMG----------LAL----------------------------TSSYGASKWGVRGLSKLAAVELGTDRIRVN 177 (254)
T ss_dssp ECCGGGTSC----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred cccchhccc----------ccc----------------------------hhhHHHHHHHHHHHHHHHHHHhCCCceEEE
Confidence 999655321 111 13499999999888876543 89999
Q ss_pred EEecccccCC
Q psy11859 434 IVRPSIVLPS 443 (851)
Q Consensus 434 ivRp~~V~G~ 443 (851)
.|-||.|-.+
T Consensus 178 ~I~PG~v~T~ 187 (254)
T d1hdca_ 178 SVHPGMTYTP 187 (254)
T ss_dssp EEEECSBCCH
T ss_pred EeeeCcccCc
Confidence 9999988643
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.37 E-value=2.8e-12 Score=132.92 Aligned_cols=168 Identities=18% Similarity=0.227 Sum_probs=122.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||++-||+.++++|++.| .+|++..|.... ..+.+. +.++ ....++.++.+|++
T Consensus 5 L~gK~alITGas~GIG~aia~~la~~G---~~Vv~~~r~~~~--~~~~~~--------~~~~----~~g~~~~~~~~Dvt 67 (261)
T d1geea_ 5 LEGKVVVITGSSTGLGKSMAIRFATEK---AKVVVNYRSKED--EANSVL--------EEIK----KVGGEAIAVKGDVT 67 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHH--------HHHH----HTTCEEEEEECCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCcHH--HHHHHH--------HHHH----hcCCcEEEEEccCC
Confidence 689999999999999999999999998 789999987532 111111 1111 12347889999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh----cCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK----MKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~----~~~~~~fV 357 (851)
+++ +++.++ .++|++||+|+.... .+.++..+++|+.|+..+.+++.. .+.-..+|
T Consensus 68 ~~~------~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv 141 (261)
T d1geea_ 68 VES------DVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVI 141 (261)
T ss_dssp SHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CHH------HHHHHHHHHHHHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhcccccccccc
Confidence 986 555544 378999999997643 246778899999999999887753 22234588
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
.+||..+.. +.|.. ..|+.||+.-+.+.+..+. ++.+
T Consensus 142 ~isS~~~~~----------~~~~~----------------------------~~Y~asKaal~~lt~~lA~e~~~~gIrV 183 (261)
T d1geea_ 142 NMSSVHEKI----------PWPLF----------------------------VHYAASKGGMKLMTETLALEYAPKGIRV 183 (261)
T ss_dssp EECCGGGTS----------CCTTC----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTCEE
T ss_pred ccccchhcc----------cCccc----------------------------cccccCCccchhhHHHHHHHhhhhCcEE
Confidence 899865432 11221 2499999999888876543 8999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
..|-||.|--+.
T Consensus 184 N~I~PG~v~T~~ 195 (261)
T d1geea_ 184 NNIGPGAINTPI 195 (261)
T ss_dssp EEEEECSBCSGG
T ss_pred EEEeeCcCcCHh
Confidence 999999987553
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=1.7e-12 Score=134.20 Aligned_cols=166 Identities=14% Similarity=0.161 Sum_probs=121.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||++-||+.++++|++.| .+|++.+|... +++++ -+.++ +...++.++.+|++
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~G---a~V~~~~r~~~------~~~~~-----~~~l~----~~g~~~~~~~~Dvs 70 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAG---ASVVVSDINAD------AANHV-----VDEIQ----QLGGQAFACRCDIT 70 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTT---CEEEEEESCHH------HHHHH-----HHHHH----HTTCCEEEEECCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHH-----HHHHH----HcCCcEEEEEccCC
Confidence 689999999999999999999999999 78999998542 22211 11122 12347889999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEe
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHF 359 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~v 359 (851)
+++ +.+.++ .++|++||+||.... .+.++..+++|+.|+..+.+++... .+-.++|.+
T Consensus 71 ~~~------~~~~~~~~~~~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~i 144 (255)
T d1fmca_ 71 SEQ------ELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTI 144 (255)
T ss_dssp CHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccc
Confidence 986 555443 379999999996542 2467788999999999998876532 123578899
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~i 434 (851)
||..+... .|.. ..|+.||+.-+.+.+..+ + ++.+..
T Consensus 145 sS~~~~~~----------~~~~----------------------------~~Y~asKaal~~lt~~lA~el~~~gIrVN~ 186 (255)
T d1fmca_ 145 TSMAAENK----------NINM----------------------------TSYASSKAAASHLVRNMAFDLGEKNIRVNG 186 (255)
T ss_dssp CCGGGTCC----------CTTC----------------------------HHHHHHHHHHHHHHHHHHHHHHTTTEEEEE
T ss_pred cccchhcc----------cccc----------------------------ccchhHHHHHHHHHHHHHHHhCccCeEEEE
Confidence 98654321 1111 249999999988887654 3 899999
Q ss_pred EecccccCC
Q psy11859 435 VRPSIVLPS 443 (851)
Q Consensus 435 vRp~~V~G~ 443 (851)
|-||.|-.+
T Consensus 187 I~PG~i~T~ 195 (255)
T d1fmca_ 187 IAPGAILTD 195 (255)
T ss_dssp EEECSBCSH
T ss_pred eeeCcCcCh
Confidence 999998654
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.36 E-value=2.3e-12 Score=132.05 Aligned_cols=162 Identities=21% Similarity=0.251 Sum_probs=122.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||++-||+.++++|++.| .+|++.+|... .+.++ .++ ..++..+.+|++
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G---a~V~~~~r~~~------~l~~~---------~~~----~~~~~~~~~Dv~ 60 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASG---AKVVAVTRTNS------DLVSL---------AKE----CPGIEPVCVDLG 60 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH---------HHH----STTCEEEECCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHH---------HHh----cCCCeEEEEeCC
Confidence 589999999999999999999999999 78999988642 22221 112 236788999999
Q ss_pred CCcCCCCHHHHHHHhc---CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc----CCceEEEEeee
Q psy11859 296 QANLGIKDSDLLMLQE---EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM----KKLVAFIHFST 361 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~---~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~~~~~fV~vST 361 (851)
+++ +++.+++ ++|++||+||.... .+.++..+++|+.|+..+.+++... +.--++|.+||
T Consensus 61 ~~~------~v~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS 134 (242)
T d1cyda_ 61 DWD------ATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSS 134 (242)
T ss_dssp CHH------HHHHHHTTCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred CHH------HHHHHHHHcCCCeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccch
Confidence 886 6666665 68999999997543 2457788999999999998876531 22458999999
Q ss_pred eeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEe
Q psy11859 362 AFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVR 436 (851)
Q Consensus 362 a~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivR 436 (851)
..+... .|. ...|+.||+.-+.+.+..+. ++.+..|-
T Consensus 135 ~~~~~~----------~~~----------------------------~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~ 176 (242)
T d1cyda_ 135 MVAHVT----------FPN----------------------------LITYSSTKGAMTMLTKAMAMELGPHKIRVNSVN 176 (242)
T ss_dssp GGGTSC----------CTT----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred hhcccc----------CCc----------------------------cccccchHHHHHHHHHHHHHHhCccCeecccCC
Confidence 644321 111 13499999999988876643 89999999
Q ss_pred cccccCC
Q psy11859 437 PSIVLPS 443 (851)
Q Consensus 437 p~~V~G~ 443 (851)
||.|-.+
T Consensus 177 PG~i~T~ 183 (242)
T d1cyda_ 177 PTVVLTD 183 (242)
T ss_dssp ECCBTTH
T ss_pred CCCccCH
Confidence 9988754
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.36 E-value=2.1e-12 Score=133.61 Aligned_cols=164 Identities=17% Similarity=0.185 Sum_probs=122.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||++-||+.+++.|++.| .+|++.+|.. ++++++.+ +...++.++.+|++
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~G---a~V~~~~r~~------~~l~~~~~------------~~~~~~~~~~~Dvt 61 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREG---ARVAIADINL------EAARATAA------------EIGPAACAIALDVT 61 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTT---EEEEEEESCH------HHHHHHHH------------HHCTTEEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCH------HHHHHHHH------------HhCCceEEEEeeCC
Confidence 589999999999999999999999999 7899998853 22322211 11347889999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh-c---CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK-M---KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~-~---~~~~~fV 357 (851)
+++ +++.++ .++|++||+||.... .+.++..+++|+.|+..+.+++.. + +.--++|
T Consensus 62 ~~~------~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv 135 (256)
T d1k2wa_ 62 DQA------SIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKII 135 (256)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred CHH------HHHHHHHHHHHHhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccc
Confidence 886 666554 368999999997543 246778899999999999886542 1 2346899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~ 432 (851)
++||..+.. +.|.. ..|+.||+.-+.+.+..+ + ++.+
T Consensus 136 ~isS~~~~~----------~~~~~----------------------------~~Y~asKaal~~lt~~lA~el~~~gIrV 177 (256)
T d1k2wa_ 136 NMASQAGRR----------GEALV----------------------------GVYCATKAAVISLTQSAGLNLIRHGINV 177 (256)
T ss_dssp EECCGGGTS----------CCTTC----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred cccchhhcc----------ccccc----------------------------cchhhhhhHHHHHHHHHHHHhcccCeEE
Confidence 999965432 11211 249999999988887654 3 8999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
..|-||.|-.+.
T Consensus 178 N~V~PG~i~T~~ 189 (256)
T d1k2wa_ 178 NAIAPGVVDGEH 189 (256)
T ss_dssp EEEEECCBCCTT
T ss_pred EEEecCCCCchh
Confidence 999999887764
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.4e-12 Score=133.75 Aligned_cols=164 Identities=16% Similarity=0.174 Sum_probs=119.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+|+||||++=||+.++++|++.| .+|++.+|... +++++. +.+ .+...++..+.+|++
T Consensus 5 l~Gkv~lITGas~GIG~~ia~~la~~G---~~V~l~~r~~~------~l~~~~-----~~~----~~~~~~~~~~~~Dvs 66 (244)
T d1yb1a_ 5 VTGEIVLITGAGHGIGRLTAYEFAKLK---SKLVLWDINKH------GLEETA-----AKC----KGLGAKVHTFVVDCS 66 (244)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH-----HHH----HHTTCCEEEEECCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHHH-----HHH----HhcCCcEEEEEeeCC
Confidence 689999999999999999999999999 78999999643 222211 111 122357999999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ +++.++ ..+|++||+|+..... +.++..+++|+.|+.++.+++... .+--++|.
T Consensus 67 ~~~------~v~~~~~~i~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~ 140 (244)
T d1yb1a_ 67 NRE------DIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVT 140 (244)
T ss_dssp CHH------HHHHHHHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEE
Confidence 986 555443 3699999999976432 346688999999999998877531 23468999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh--------CCC
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK--------TKL 430 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~--------~~l 430 (851)
+||..+... .|. ...|+.||+.-+.+.+..+ .|+
T Consensus 141 isS~~~~~~----------~~~----------------------------~~~Y~asKaal~~~~~~La~El~~~~~~gI 182 (244)
T d1yb1a_ 141 VASAAGHVS----------VPF----------------------------LLAYCSSKFAAVGFHKTLTDELAALQITGV 182 (244)
T ss_dssp ECCCC-CCC----------HHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred eecchhcCC----------CCC----------------------------cHHHHHHHHHHHHHHHHHHHHHHhhcCCCE
Confidence 999654321 111 1249999998877776553 268
Q ss_pred CEEEEeccccc
Q psy11859 431 PVVIVRPSIVL 441 (851)
Q Consensus 431 ~~~ivRp~~V~ 441 (851)
.+..+.||.|-
T Consensus 183 ~V~~i~PG~v~ 193 (244)
T d1yb1a_ 183 KTTCLCPNFVN 193 (244)
T ss_dssp EEEEEEETHHH
T ss_pred EEEEEEcCCCC
Confidence 89999998763
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.35 E-value=3.8e-12 Score=130.85 Aligned_cols=165 Identities=15% Similarity=0.159 Sum_probs=120.8
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||++=||+.+++.|++.| .+|++.+|.... ...+. ++ +...++.++.+|++
T Consensus 3 L~gKvalVTGas~GIG~aia~~la~~G---a~V~~~~~~~~~-----~~~~~--------~~----~~g~~~~~~~~Dvs 62 (247)
T d2ew8a1 3 LKDKLAVITGGANGIGRAIAERFAVEG---ADIAIADLVPAP-----EAEAA--------IR----NLGRRVLTVKCDVS 62 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCCH-----HHHHH--------HH----HTTCCEEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCchH-----HHHHH--------HH----HcCCcEEEEEeeCC
Confidence 689999999999999999999999999 789999886532 11111 11 12347899999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
|++ +++.++ .++|++||+||.... .+.++..+++|+.|+..+.+++... .+--++|+
T Consensus 63 ~~~------~v~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~ 136 (247)
T d2ew8a1 63 QPG------DVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIIN 136 (247)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccc
Confidence 986 665543 379999999997543 2467889999999999999887542 12468999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ 433 (851)
+||..+.. +.|.. ..|+.||+.-+.+.+..+ + ++.+.
T Consensus 137 isS~~~~~----------~~~~~----------------------------~~Y~asKaal~~ltk~lA~ela~~gIrVN 178 (247)
T d2ew8a1 137 LTSTTYWL----------KIEAY----------------------------THYISTKAANIGFTRALASDLGKDGITVN 178 (247)
T ss_dssp ECCGGGGS----------CCSSC----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred cccchhcc----------cCccc----------------------------ccchhhhccHHHHHHHHHHHhcccCeEEE
Confidence 99965432 12221 249999999888776654 3 89999
Q ss_pred EEecccccCCC
Q psy11859 434 IVRPSIVLPSF 444 (851)
Q Consensus 434 ivRp~~V~G~~ 444 (851)
.|-||.|-.+.
T Consensus 179 ~I~PG~i~T~~ 189 (247)
T d2ew8a1 179 AIAPSLVRTAT 189 (247)
T ss_dssp EEEECCC----
T ss_pred EEeeCCCCCcc
Confidence 99999887553
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.35 E-value=2.8e-12 Score=132.78 Aligned_cols=167 Identities=20% Similarity=0.264 Sum_probs=122.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||+|-||+.++++|++.| .+|++..|... ++++.. +.+ .+....+.++.+|++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G---~~V~i~~r~~~------~l~~~~-----~~~----~~~~~~~~~~~~D~s 65 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLG---ARVYTCSRNEK------ELDECL-----EIW----REKGLNVEGSVCDLL 65 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH-----HHH----HHTTCCEEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHHH-----HHH----HhcCCCceEEEeecC
Confidence 689999999999999999999999999 78999998642 222211 111 122346888999999
Q ss_pred CCcCCCCHHHHHHHh--------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQ--------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~--------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV 357 (851)
+++ +++.++ ..+|+++|+|+.... .+.+...+++|+.|+..+.+++... +.-.++|
T Consensus 66 ~~~------~~~~~~~~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii 139 (258)
T d1ae1a_ 66 SRT------ERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVI 139 (258)
T ss_dssp CHH------HHHHHHHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred CHH------HHHHHHHHHHHHhCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccccccccc
Confidence 886 544432 248999999997643 2467889999999999998877532 2467899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+... .|.. ..|+.||+.-+.+.+..+. ++.+
T Consensus 140 ~isS~~~~~~----------~~~~----------------------------~~Y~~sK~al~~lt~~lA~el~~~gIrv 181 (258)
T d1ae1a_ 140 FLSSIAGFSA----------LPSV----------------------------SLYSASKGAINQMTKSLACEWAKDNIRV 181 (258)
T ss_dssp EECCGGGTSC----------CTTC----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred cccccccccc----------cccc----------------------------hhHHHHHHHHHHHHHHHHHhcCcCcEEE
Confidence 9999655321 1221 3499999999888876643 8999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
-.|.||.|..+.
T Consensus 182 N~I~PG~i~T~~ 193 (258)
T d1ae1a_ 182 NSVAPGVILTPL 193 (258)
T ss_dssp EEEEECSBC---
T ss_pred EEEeeCcccCcc
Confidence 999999997653
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.35 E-value=2.6e-12 Score=133.17 Aligned_cols=166 Identities=15% Similarity=0.223 Sum_probs=122.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||++-||+.+++.|++.| .+|++.+|.+. +++++. +.+ .+...++.++.+|++
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~G---a~V~~~~r~~~------~l~~~~-----~~~----~~~g~~~~~~~~Dv~ 64 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEG---TAIALLDMNRE------ALEKAE-----ASV----REKGVEARSYVCDVT 64 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH-----HHH----HTTTSCEEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHHH-----HHH----HhcCCcEEEEEccCC
Confidence 689999999999999999999999999 78999998642 222111 111 122347899999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCC----cc----hhHHHHHHHHHHHHHHHHHHHHh-c--CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLK----LE----AELKENVAANTRGTQRLLDIALK-M--KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~----~~----~~~~~~~~~Nv~Gt~~ll~~a~~-~--~~~~~fV 357 (851)
+++ +++.++ ..+|++||+||... +. +.++..+++|+.|+..+.+++.. + .+--++|
T Consensus 65 ~~~------~v~~~~~~~~~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II 138 (260)
T d1zema1 65 SEE------AVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIV 138 (260)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CHH------HHHHHHHHHHHHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCC
Confidence 876 555443 36999999999643 21 35778899999999999888753 2 2346899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+... .|.. ..|+.||+.-+.+.+..+. ++.+
T Consensus 139 ~isS~~~~~~----------~~~~----------------------------~~Y~asKaal~~ltk~lA~el~~~gIrV 180 (260)
T d1zema1 139 NTASMAGVKG----------PPNM----------------------------AAYGTSKGAIIALTETAALDLAPYNIRV 180 (260)
T ss_dssp EECCHHHHSC----------CTTB----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred eeechhhccC----------Ccch----------------------------HHHHHHHHHHHHHHHHHHHHhhhhCCEE
Confidence 9999755321 1221 2499999999888876543 8999
Q ss_pred EEEecccccCC
Q psy11859 433 VIVRPSIVLPS 443 (851)
Q Consensus 433 ~ivRp~~V~G~ 443 (851)
..|-||.|-.+
T Consensus 181 N~I~PG~v~T~ 191 (260)
T d1zema1 181 NAISPGYMGPG 191 (260)
T ss_dssp EEEEECSBCSS
T ss_pred EEeccCcccCc
Confidence 99999998654
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.35 E-value=3.1e-12 Score=132.56 Aligned_cols=166 Identities=19% Similarity=0.212 Sum_probs=121.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||++=||+.++++|++.| .+|++.+|.+. +++++. +.+. ....++.++.+|++
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~G---a~V~~~~r~~~------~l~~~~-----~~~~----~~g~~~~~~~~Dv~ 67 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLG---ASVYTCSRNQK------ELNDCL-----TQWR----SKGFKVEASVCDLS 67 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH-----HHHH----HTTCEEEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHHH-----HHHH----hcCCCceEEEeeCC
Confidence 589999999999999999999999998 78999998542 222211 1111 12347888999999
Q ss_pred CCcCCCCHHHHHHHh-------c-CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------E-EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~-~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV 357 (851)
+++ +.+.++ . .+|++||+|+.... .+.++..+++|+.|+..+.+++... .+--++|
T Consensus 68 ~~~------~v~~~~~~~~~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii 141 (259)
T d2ae2a_ 68 SRS------ERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVV 141 (259)
T ss_dssp CHH------HHHHHHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEE
T ss_pred CHH------HHHHHHHHHHHHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccccc
Confidence 876 444332 2 58999999997543 2457788999999999998877542 2346899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+.. +.|. ...|+.||+.-+.+.+..+. ++.+
T Consensus 142 ~isS~~~~~----------~~~~----------------------------~~~Y~asKaal~~lt~~lA~el~~~gIrV 183 (259)
T d2ae2a_ 142 FISSVSGAL----------AVPY----------------------------EAVYGATKGAMDQLTRCLAFEWAKDNIRV 183 (259)
T ss_dssp EECCGGGTS----------CCTT----------------------------CHHHHHHHHHHHHHHHHHHHHTGGGTEEE
T ss_pred ccccccccc----------cccc----------------------------ccchHHHHHHHHHHHHHHHHHhCcCceEE
Confidence 999965422 1121 13499999998888876543 8999
Q ss_pred EEEecccccCC
Q psy11859 433 VIVRPSIVLPS 443 (851)
Q Consensus 433 ~ivRp~~V~G~ 443 (851)
..|-||.|-.+
T Consensus 184 N~I~PG~i~T~ 194 (259)
T d2ae2a_ 184 NGVGPGVIATS 194 (259)
T ss_dssp EEEEECSBCSH
T ss_pred EEeeeCcccCH
Confidence 99999988644
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.35 E-value=4.3e-12 Score=130.77 Aligned_cols=215 Identities=16% Similarity=0.183 Sum_probs=139.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||++-||+.+++.|++.| .+|.+.+|.... +.+.. +.+.+ ....++.++.+|++
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~G---a~V~i~~r~~~~------~~~~~-----~~l~~---~~g~~~~~~~~Dv~ 65 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAG---CSVVVASRNLEE------ASEAA-----QKLTE---KYGVETMAFRCDVS 65 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH------HHHHH-----HHHHH---HHCCCEEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHH------HHHHH-----HHHHH---HhCCcEEEEEccCC
Confidence 589999999999999999999999999 789999986432 21110 11111 12347889999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh-cC--CceEEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK-MK--KLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~-~~--~~~~fV~ 358 (851)
+++ +++.++ .++|++||+||.... .+.++..+++|+.|+..+.+++.. +. +--++|.
T Consensus 66 ~~~------~v~~~~~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~ 139 (251)
T d1vl8a_ 66 NYE------EVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIIN 139 (251)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccc
Confidence 886 555544 369999999996543 246778899999999999988754 21 2358899
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+... +.|. ...|+.||+.-+.+.+..+. ++.+.
T Consensus 140 i~S~~~~~~---------~~~~----------------------------~~~Y~asKaal~~lt~~lA~e~~~~gIrVN 182 (251)
T d1vl8a_ 140 IGSLTVEEV---------TMPN----------------------------ISAYAASKGGVASLTKALAKEWGRYGIRVN 182 (251)
T ss_dssp ECCGGGTCC---------CSSS----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred cccchhccc---------cCcc----------------------------ccchHHHHHhHHHHHHHHHHHhcccCeEEE
Confidence 988432110 1111 12499999999988876543 89999
Q ss_pred EEecccccCCCCCC---chhHhhhhcCCceE-EEEcccCceeEEE--eecC--CCCccEEEEeCC
Q psy11859 434 IVRPSIVLPSFQEP---VPGWVDSLNGPVGV-LVASGKGVVRSMI--LNDL--STETQVFNISSN 490 (851)
Q Consensus 434 ivRp~~V~G~~~~p---~p~~i~~~~~~~~~-~~~~g~~v~~~~~--~~~~--~~~~~iyni~~~ 490 (851)
.|-||.|-.+..+. -+...+.+....|+ -++...++++.+. +.++ --.|++..+.+|
T Consensus 183 ~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~a~~itG~~i~vDGG 247 (251)
T d1vl8a_ 183 VIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGG 247 (251)
T ss_dssp EEEECCBCSTTTHHHHTCHHHHHHHHHTCTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EEeeCcccCHHHHhccCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCchhCCCcCcEEEeCcC
Confidence 99999997665332 12233332211111 0122345554433 2222 235777777766
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.9e-12 Score=133.21 Aligned_cols=161 Identities=23% Similarity=0.280 Sum_probs=119.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||++-||+.+++.|++.| .+|++.+|... .+++ +.++ ..++.++.+|++
T Consensus 4 l~GK~alITGas~GIG~aia~~la~~G---a~V~i~~r~~~------~~~~---------~~~~----~~~~~~~~~Dvs 61 (250)
T d1ydea1 4 YAGKVVVVTGGGRGIGAGIVRAFVNSG---ARVVICDKDES------GGRA---------LEQE----LPGAVFILCDVT 61 (250)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHH---------HHHH----CTTEEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHH------HHHH---------HHHh----cCCCeEEEccCC
Confidence 689999999999999999999999999 78999988632 2222 1112 236789999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCC----cc----hhHHHHHHHHHHHHHHHHHHHHhc-C-CceEEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLK----LE----AELKENVAANTRGTQRLLDIALKM-K-KLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~----~~----~~~~~~~~~Nv~Gt~~ll~~a~~~-~-~~~~fV~ 358 (851)
|++ +++.++ .++|++||+|+... +. +.++..+++|+.|+.++.+++... . +--++|.
T Consensus 62 ~~~------~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~ 135 (250)
T d1ydea1 62 QED------DVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVIN 135 (250)
T ss_dssp SHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcc
Confidence 987 665554 36899999999542 21 357788999999999999887642 1 1258999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ 433 (851)
+||..+... .|. ...|+.||+.-+.+.+..+ + ++.+.
T Consensus 136 isS~~~~~~----------~~~----------------------------~~~Y~asKaal~~lt~~lA~e~a~~gIrVN 177 (250)
T d1ydea1 136 ISSLVGAIG----------QAQ----------------------------AVPYVATKGAVTAMTKALALDESPYGVRVN 177 (250)
T ss_dssp ECCHHHHHC----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred ccccccccc----------ccC----------------------------cchhHHHHhhHHHHHHHHHHHhcccCeEEE
Confidence 999654311 111 1249999999888876654 3 89999
Q ss_pred EEecccccC
Q psy11859 434 IVRPSIVLP 442 (851)
Q Consensus 434 ivRp~~V~G 442 (851)
.|-||.|--
T Consensus 178 ~I~PG~i~T 186 (250)
T d1ydea1 178 CISPGNIWT 186 (250)
T ss_dssp EEEECSBCC
T ss_pred EEeeCCCCC
Confidence 999998853
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.34 E-value=2.2e-12 Score=133.06 Aligned_cols=169 Identities=14% Similarity=0.180 Sum_probs=122.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||+|=||+.+++.|++.| .+|++.+|... +++++ -+.+ .....++.++.+|++
T Consensus 8 lenKvalITGas~GIG~a~a~~la~~G---a~V~~~~r~~~------~l~~~-----~~~l----~~~g~~~~~~~~Dvt 69 (251)
T d2c07a1 8 GENKVALVTGAGRGIGREIAKMLAKSV---SHVICISRTQK------SCDSV-----VDEI----KSFGYESSGYAGDVS 69 (251)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTS---SEEEEEESSHH------HHHHH-----HHHH----HTTTCCEEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEECCHH------HHHHH-----HHHH----HhcCCcEEEEEccCC
Confidence 578999999999999999999999998 78999998642 22211 1111 122347899999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
+++ ++..++ .++|++||+|+.... .+.++..+++|+.|+..+.+++... .+--++|+
T Consensus 70 ~~~------~v~~~~~~~~~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVn 143 (251)
T d2c07a1 70 KKE------EISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIIN 143 (251)
T ss_dssp CHH------HHHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHH------HHHHHHHHHHHhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEE
Confidence 986 665554 378999999997543 2467889999999999998876532 13468999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ 433 (851)
+||..+.. +.|.. ..|+.||+.-+.+.+..+. ++.+.
T Consensus 144 isS~~~~~----------~~~~~----------------------------~~Y~asKaal~~ltr~lA~el~~~gIrVN 185 (251)
T d2c07a1 144 ISSIVGLT----------GNVGQ----------------------------ANYSSSKAGVIGFTKSLAKELASRNITVN 185 (251)
T ss_dssp ECCTHHHH----------CCTTC----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred ECCHHhcC----------CCCCC----------------------------HHHHHHHHHHHHHHHHHHHHhhhhCeEEE
Confidence 99965431 11111 2399999999988876643 89999
Q ss_pred EEecccccCCCCC
Q psy11859 434 IVRPSIVLPSFQE 446 (851)
Q Consensus 434 ivRp~~V~G~~~~ 446 (851)
.|-||.|-.+..+
T Consensus 186 ~V~PG~v~T~~~~ 198 (251)
T d2c07a1 186 AIAPGFISSDMTD 198 (251)
T ss_dssp EEEECSBCC----
T ss_pred EEccCCEeccccc
Confidence 9999999766543
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.34 E-value=3.6e-12 Score=132.21 Aligned_cols=168 Identities=14% Similarity=0.113 Sum_probs=121.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||++=||+.++++|++.| .+|++..|.... ..+.+.+ .+.+ ....++.++.+|++
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~G---a~V~~~~r~~~~--~~~~~~~--------~~~~---~~g~~~~~~~~Dv~ 65 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQG---ADIVLNGFGDAA--EIEKVRA--------GLAA---QHGVKVLYDGADLS 65 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEECCSCHH--HHHHHHH--------HHHH---HHTSCEEEECCCTT
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCcHH--HHHHHHH--------HHHH---hcCCcEEEEECCCC
Confidence 589999999999999999999999999 789999886432 1111111 1111 11247889999999
Q ss_pred CCcCCCCHHHHHHHhc-------CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEE
Q psy11859 296 QANLGIKDSDLLMLQE-------EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIH 358 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~-------~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~ 358 (851)
+++ +++.+++ ++|++||+||.... .+.++..+++|+.|+..+.+++... .+--++|.
T Consensus 66 ~~~------~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~ 139 (260)
T d1x1ta1 66 KGE------AVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIIN 139 (260)
T ss_dssp SHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHH------HHHHHHHHHHHHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEee
Confidence 986 6655543 68999999997543 2467788999999999988877532 12468999
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEE
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVV 433 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ 433 (851)
+||..+... .|.. ..|+.||+.-+.+.+..+ + ++.+.
T Consensus 140 isS~~~~~~----------~~~~----------------------------~~Y~asKaal~~lt~~lA~el~~~gIrVN 181 (260)
T d1x1ta1 140 IASAHGLVA----------SANK----------------------------SAYVAAKHGVVGFTKVTALETAGQGITAN 181 (260)
T ss_dssp ECCGGGTSC----------CTTC----------------------------HHHHHHHHHHHHHHHHHHHHHTTTTEEEE
T ss_pred cccccceec----------cCCc----------------------------chhhhhhhhHHHhHHHHHHHhchhCcEEE
Confidence 999655321 1211 249999999888876654 3 89999
Q ss_pred EEecccccCC
Q psy11859 434 IVRPSIVLPS 443 (851)
Q Consensus 434 ivRp~~V~G~ 443 (851)
.|.||.|-.+
T Consensus 182 ~I~PG~i~T~ 191 (260)
T d1x1ta1 182 AICPGWVRTP 191 (260)
T ss_dssp EEEECCBCC-
T ss_pred EEecCCCCCh
Confidence 9999988654
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.34 E-value=5.2e-12 Score=130.38 Aligned_cols=167 Identities=15% Similarity=0.186 Sum_probs=121.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||++=||..++++|++.| .+|+++.|..... +.+.+ +....+ ..++.++..|++
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G---~~vii~~r~~~~~---~~~~~---------~~~~~~--~~~~~~~~~d~~ 65 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRN---LKNFVILDRVENP---TALAE---------LKAINP--KVNITFHTYDVT 65 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTC---CSEEEEEESSCCH---HHHHH---------HHHHCT--TSEEEEEECCTT
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCC---CEEEEEECCcccH---HHHHH---------HHhhCC--CCCEEEEEeecC
Confidence 689999999999999999999999998 6788887776542 22221 111211 237899999998
Q ss_pred CCcCCCCHHHHHHH-------hcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHh-c-----CCceEEEEeeee
Q psy11859 296 QANLGIKDSDLLML-------QEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALK-M-----KKLVAFIHFSTA 362 (851)
Q Consensus 296 ~~~lgls~~~~~~~-------~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~-~-----~~~~~fV~vSTa 362 (851)
.+. ++++.+ ..++|++||+|+... ++.++..+++|+.|+.++..++.. + +...++|++||.
T Consensus 66 ~~~-----~~~~~~~~~~~~~~g~iDilvnnAG~~~-~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~ 139 (254)
T d1sbya1 66 VPV-----AESKKLLKKIFDQLKTVDILINGAGILD-DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSV 139 (254)
T ss_dssp SCH-----HHHHHHHHHHHHHHSCCCEEEECCCCCC-TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred CCH-----HHHHHHHHHHHHHcCCCCEEEeCCCCCC-HHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEech
Confidence 542 123322 247999999999764 567889999999999999888764 2 123679999996
Q ss_pred eeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEec
Q psy11859 363 FCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVRP 437 (851)
Q Consensus 363 ~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivRp 437 (851)
.+.. +.|.. ..|+.||+.-..+.+..+. ++.+..|-|
T Consensus 140 ~~~~----------~~~~~----------------------------~~Y~asKaal~~~t~~la~el~~~gIrVn~I~P 181 (254)
T d1sbya1 140 TGFN----------AIHQV----------------------------PVYSASKAAVVSFTNSLAKLAPITGVTAYSINP 181 (254)
T ss_dssp GGTS----------CCTTS----------------------------HHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEE
T ss_pred hhcc----------CCCCC----------------------------HHHHHHHHHHHHHHHHHHhhccccCeEEEEEEe
Confidence 5532 11111 2499999998888776643 899999999
Q ss_pred ccccCC
Q psy11859 438 SIVLPS 443 (851)
Q Consensus 438 ~~V~G~ 443 (851)
|.|..+
T Consensus 182 G~v~T~ 187 (254)
T d1sbya1 182 GITRTP 187 (254)
T ss_dssp CSEESH
T ss_pred CCCcCc
Confidence 998754
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.34 E-value=3.3e-12 Score=132.24 Aligned_cols=165 Identities=18% Similarity=0.169 Sum_probs=121.2
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
.||++|||||++=||+.+++.|++.| .+|++.+|... +++++. +.|+ +...++.++.+|+++
T Consensus 1 DgKValITGas~GIG~aia~~la~~G---a~V~i~~r~~~------~l~~~~-----~~l~----~~g~~~~~~~~Dvs~ 62 (257)
T d2rhca1 1 DSEVALVTGATSGIGLEIARRLGKEG---LRVFVCARGEE------GLRTTL-----KELR----EAGVEADGRTCDVRS 62 (257)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH-----HHHH----HTTCCEEEEECCTTC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHHH-----HHHH----hcCCcEEEEEeecCC
Confidence 47899999999999999999999999 78999998642 222211 1122 123478999999999
Q ss_pred CcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc-----CCceEEE
Q psy11859 297 ANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM-----KKLVAFI 357 (851)
Q Consensus 297 ~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~-----~~~~~fV 357 (851)
++ +++.++ .++|++||+||.... .+.++..+++|+.|+..+.+++... .+-.++|
T Consensus 63 ~~------~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii 136 (257)
T d2rhca1 63 VP------EIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIV 136 (257)
T ss_dssp HH------HHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEE
T ss_pred HH------HHHHHHHHHHHHhCCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccc
Confidence 86 555543 268999999997543 2467788999999999999988642 1346789
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
.+||..+... .|.. ..|+.||+.-+.+.+..+. ++.+
T Consensus 137 ~i~S~~~~~~----------~~~~----------------------------~~Y~asKaal~~ltk~lA~el~~~gIrV 178 (257)
T d2rhca1 137 NIASTGGKQG----------VVHA----------------------------APYSASKHGVVGFTKALGLELARTGITV 178 (257)
T ss_dssp EECCGGGTSC----------CTTC----------------------------HHHHHHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred cccccccccc----------cccc----------------------------hhHHHHHHHHHHHHHHHHHHhhhhCcEE
Confidence 9988654321 1211 2499999999888876543 7899
Q ss_pred EEEecccccCC
Q psy11859 433 VIVRPSIVLPS 443 (851)
Q Consensus 433 ~ivRp~~V~G~ 443 (851)
..|-||.|-.+
T Consensus 179 N~I~PG~i~T~ 189 (257)
T d2rhca1 179 NAVCPGFVETP 189 (257)
T ss_dssp EEEEECSBCSH
T ss_pred EEEeeCCCCCH
Confidence 99999988543
|
| >d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 297b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=3.4e-13 Score=103.55 Aligned_cols=53 Identities=26% Similarity=0.557 Sum_probs=39.4
Q ss_pred cccccccCCccCccccChhhHHHHHhhhcCCCccccCccccCccccCchhHHHhhhhc
Q psy11859 717 VRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSH 774 (851)
Q Consensus 717 ~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H 774 (851)
||||+| + ||++|.+..+|..|+++|+|++||.|. .||++|.+.+.|.+|+++|
T Consensus 1 EK~y~C--~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~--~C~k~F~~~~~L~~H~r~H 53 (53)
T d2csha1 1 DKLYPC--Q-CGKSFTHKSQRDRHMSMHLGLRPYGCG--VCGKKFKMKHHLVGHMKIH 53 (53)
T ss_dssp CCCEEC--T-TSCEESSHHHHHHHHHHHSCCCSEECT--TTSCEESSSHHHHHHHTTT
T ss_pred CcCCCC--C-CCCeECCHHHhHHHhhccccccCCcCC--CcCCEecCHHHHHHHHhcC
Confidence 467777 4 777777777777777777777777776 7777777777777777765
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.32 E-value=5.2e-12 Score=130.70 Aligned_cols=168 Identities=18% Similarity=0.200 Sum_probs=122.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||++=||+.+++.|++.| .+|++.+|.... +++. -..+.+..+ ..++.++.+|++
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~G---a~V~i~~r~~~~------l~~~-----~~~~~~~~~--~~~~~~~~~Dvt 65 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEG---AKLSLVDVSSEG------LEAS-----KAAVLETAP--DAEVLTTVADVS 65 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH------HHHH-----HHHHHHHCT--TCCEEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHH------HHHH-----HHHHHhhCC--CCeEEEEeccCC
Confidence 589999999999999999999999999 789999986432 2111 111222211 237889999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCC----cc----hhHHHHHHHHHHHHHHHHHHHHhc---CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLK----LE----AELKENVAANTRGTQRLLDIALKM---KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~----~~----~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV 357 (851)
|++ +++.++ .++|++||+||... +. +.++..+++|+.|+..+.+++... .+--++|
T Consensus 66 ~~~------~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii 139 (258)
T d1iy8a_ 66 DEA------QVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVV 139 (258)
T ss_dssp SHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCc
Confidence 987 655543 36999999999542 21 457788999999999999877432 1345799
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~ 432 (851)
++||..+.. +.|.. ..|+.||+..+.+.+..+ + ++.+
T Consensus 140 ~isS~~~~~----------~~~~~----------------------------~~Y~asKaal~~lt~~lA~el~~~gIrV 181 (258)
T d1iy8a_ 140 NTASVGGIR----------GIGNQ----------------------------SGYAAAKHGVVGLTRNSAVEYGRYGIRI 181 (258)
T ss_dssp EECCGGGTS----------BCSSB----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTCEE
T ss_pred ccccHhhcc----------CCCCc----------------------------hHHHHHHHHHHHHHHHHHHHhCccCceE
Confidence 999965421 11211 349999999888876654 3 8999
Q ss_pred EEEecccccCC
Q psy11859 433 VIVRPSIVLPS 443 (851)
Q Consensus 433 ~ivRp~~V~G~ 443 (851)
..|-||.|..+
T Consensus 182 N~i~PG~v~T~ 192 (258)
T d1iy8a_ 182 NAIAPGAIWTP 192 (258)
T ss_dssp EEEEECSBCSH
T ss_pred EEEeeCcccCH
Confidence 99999998654
|
| >d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 297b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=1.9e-13 Score=105.01 Aligned_cols=53 Identities=17% Similarity=0.200 Sum_probs=51.0
Q ss_pred ccceeecCCccccchhhhhhhcccccCCcccccccCCccCccccChhhHHHHHhhh
Q psy11859 689 FVIFTQILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRH 744 (851)
Q Consensus 689 ~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H 744 (851)
++||+|+ |+++|+.+..|..|+++|++++||+| ++||++|.+.++|..|+++|
T Consensus 1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C--~~C~k~F~~~~~L~~H~r~H 53 (53)
T d2csha1 1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGC--GVCGKKFKMKHHLVGHMKIH 53 (53)
T ss_dssp CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEEC--TTTSCEESSSHHHHHHHTTT
T ss_pred CcCCCCC-CCCeECCHHHhHHHhhccccccCCcC--CCcCCEecCHHHHHHHHhcC
Confidence 4799995 99999999999999999999999999 89999999999999999987
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.31 E-value=7.5e-12 Score=129.51 Aligned_cols=167 Identities=16% Similarity=0.189 Sum_probs=115.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||++=||..+++.|++.| .+|++.+|... ++++.. +.+. ....++..+.+|++
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~G---a~V~~~~r~~~------~l~~~~-----~~~~----~~~~~~~~~~~Dv~ 67 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFG---AVIHTCARNEY------ELNECL-----SKWQ----KKGFQVTGSVCDAS 67 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH-----HHHH----HTTCCEEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHHH-----HHHH----hcCCceEEEeccCC
Confidence 589999999999999999999999999 78999998642 222211 1111 22347899999999
Q ss_pred CCcCCCCHHHHHHHh--------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQ--------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~--------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV 357 (851)
+++ +...++ ..+|++||+||.... .+.++..+++|+.|+..+.+++... .+--++|
T Consensus 68 ~~~------~v~~~~~~~~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv 141 (259)
T d1xq1a_ 68 LRP------EREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNII 141 (259)
T ss_dssp SHH------HHHHHHHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEE
T ss_pred CHH------HHHHHHHHHHHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccccccc
Confidence 876 444332 248999999997543 2467789999999999999887542 1245899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~ 432 (851)
++||..+... .... ..|+.||+..+.+.+..+. ++.+
T Consensus 142 ~isS~~~~~~---------~~~~-----------------------------~~Y~asKaal~~lt~~lA~e~~~~gIrV 183 (259)
T d1xq1a_ 142 FMSSIAGVVS---------ASVG-----------------------------SIYSATKGALNQLARNLACEWASDGIRA 183 (259)
T ss_dssp EEC-------------------C-----------------------------CHHHHHHHHHHHHHHHHHHHHGGGTCEE
T ss_pred cccccccccc---------cccc-----------------------------ccccccccchhhhhHHHHHHhcccCeEE
Confidence 9999654321 1111 3499999999888776543 8999
Q ss_pred EEEecccccCCC
Q psy11859 433 VIVRPSIVLPSF 444 (851)
Q Consensus 433 ~ivRp~~V~G~~ 444 (851)
..|-||.|-.+.
T Consensus 184 N~V~PG~i~T~~ 195 (259)
T d1xq1a_ 184 NAVAPAVIATPL 195 (259)
T ss_dssp EEEECCSCC---
T ss_pred EEeccCcccCHH
Confidence 999999987553
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.31 E-value=7.2e-12 Score=129.45 Aligned_cols=163 Identities=16% Similarity=0.122 Sum_probs=118.4
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|.+|||||++=||..++++|++.| .+|++.+|... +++++ -+.+. +...++.++.+|+++++
T Consensus 2 KValITGas~GIG~aia~~la~~G---a~V~~~~r~~~------~l~~~-----~~~i~----~~g~~~~~~~~Dv~~~~ 63 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDG---FAVAIADYNDA------TAKAV-----ASEIN----QAGGHAVAVKVDVSDRD 63 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHH----HTTCCEEEEECCTTSHH
T ss_pred CEEEEcCCccHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHH-----HHHHH----hcCCcEEEEEeeCCCHH
Confidence 567999999999999999999999 78999998642 22211 11121 12347899999999986
Q ss_pred CCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh----cCCceEEEEee
Q psy11859 299 LGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK----MKKLVAFIHFS 360 (851)
Q Consensus 299 lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~----~~~~~~fV~vS 360 (851)
++..++ .++|++||+||.... .+.++..+++|+.|+.++.+++.. .+.-.++|.+|
T Consensus 64 ------~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~is 137 (255)
T d1gega_ 64 ------QVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINAC 137 (255)
T ss_dssp ------HHHHHHHHHHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred ------HHHHHHHHHHHHhCCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhcccccccccc
Confidence 555543 369999999997543 245778899999999999887643 22346799999
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~iv 435 (851)
|..+.. +.|.. ..|+.||+.-+.+.+..+ + ++.+..|
T Consensus 138 S~~~~~----------~~~~~----------------------------~~Y~asKaal~~ltk~lA~el~~~gIrVN~I 179 (255)
T d1gega_ 138 SQAGHV----------GNPEL----------------------------AVYSSSKFAVRGLTQTAARDLAPLGITVNGY 179 (255)
T ss_dssp CGGGTS----------CCTTB----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred chhhcc----------cCccc----------------------------ccchhCHHHHHhhHHHHHHHhhhhCcEEEEE
Confidence 864421 11211 249999999888877654 3 8999999
Q ss_pred ecccccCC
Q psy11859 436 RPSIVLPS 443 (851)
Q Consensus 436 Rp~~V~G~ 443 (851)
-||.|-.+
T Consensus 180 ~PG~i~T~ 187 (255)
T d1gega_ 180 CPGIVKTP 187 (255)
T ss_dssp EECSBSSH
T ss_pred ecCcccCh
Confidence 99988543
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.30 E-value=9.8e-12 Score=128.04 Aligned_cols=165 Identities=19% Similarity=0.215 Sum_probs=120.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||++=||+.+++.|++.| .+|++.+|.... .+.+.+. + ....++.++.+|++
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~G---a~V~~~~r~~~~---~~~~~~~--------~-----~~~~~~~~~~~Dv~ 64 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEG---AKVMITGRHSDV---GEKAAKS--------V-----GTPDQIQFFQHDSS 64 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------H-----CCTTTEEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHH--------h-----CCCCcEEEEEccCC
Confidence 689999999999999999999999999 789999886421 1111111 1 11347899999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh-c---CCceEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK-M---KKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~-~---~~~~~fV 357 (851)
|++ ++..++ .++|++||+|+.... .+.++..+++|+.|+..+.+++.. + +.-.++|
T Consensus 65 ~~~------~v~~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii 138 (251)
T d1zk4a1 65 DED------GWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASII 138 (251)
T ss_dssp CHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEE
T ss_pred CHH------HHHHHHHHHHHHhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceE
Confidence 986 555443 368999999997543 245778899999999999988753 2 2124789
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh------C-CC
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK------T-KL 430 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~------~-~l 430 (851)
.+||..+.. +.|.. ..|+.||+..+.+.+..+ + ++
T Consensus 139 ~isS~~~~~----------~~~~~----------------------------~~Y~asKaal~~lt~~lA~e~~l~~~gI 180 (251)
T d1zk4a1 139 NMSSIEGFV----------GDPSL----------------------------GAYNASKGAVRIMSKSAALDCALKDYDV 180 (251)
T ss_dssp EECCGGGTS----------CCTTC----------------------------HHHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred eeeccceec----------cCCCc----------------------------hhHHHHHHHHhcchHHHHHHHhcCCCcE
Confidence 999965421 11211 249999999888766432 2 79
Q ss_pred CEEEEecccccCC
Q psy11859 431 PVVIVRPSIVLPS 443 (851)
Q Consensus 431 ~~~ivRp~~V~G~ 443 (851)
.+..|-||.|-.+
T Consensus 181 rVN~I~PG~i~T~ 193 (251)
T d1zk4a1 181 RVNTVHPGYIKTP 193 (251)
T ss_dssp EEEEEEECCBCCH
T ss_pred EEEEEeCCCCCCh
Confidence 9999999998654
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.29 E-value=3.2e-12 Score=130.98 Aligned_cols=163 Identities=15% Similarity=0.126 Sum_probs=118.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||++-||+.++++|++.| .+|++..|+.. ++.+.. + +...++.++++|++
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G---~~V~~~~r~~~------~~~~~~---------~---~~~~~~~~~~~Dls 61 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREG---ASLVAVDREER------LLAEAV---------A---ALEAEAIAVVADVS 61 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH---------H---TCCSSEEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHHH---------H---HcCCceEEEEecCC
Confidence 689999999999999999999999999 78999988642 222211 1 22357889999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEee
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKMK-KLVAFIHFS 360 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~~-~~~~fV~vS 360 (851)
+++ +++.++ .++|++||+|+.... .+.+++.+++|+.++..+.+++...- +-...+.+|
T Consensus 62 ~~~------~i~~~~~~i~~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~s 135 (241)
T d2a4ka1 62 DPK------AVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTG 135 (241)
T ss_dssp SHH------HHHHHHHHHHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred CHH------HHHHHHHHHHHHhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecc
Confidence 886 665443 369999999987543 24567889999999999999876533 233444444
Q ss_pred eeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEE
Q psy11859 361 TAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIV 435 (851)
Q Consensus 361 Ta~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~iv 435 (851)
|.+.. ..| . ...|+.||+.-|.+.+..+. ++.+..|
T Consensus 136 s~a~~-----------~~~-~---------------------------~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I 176 (241)
T d2a4ka1 136 SVAGL-----------GAF-G---------------------------LAHYAAGKLGVVGLARTLALELARKGVRVNVL 176 (241)
T ss_dssp CCTTC-----------CHH-H---------------------------HHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEE
T ss_pred ccccc-----------ccc-C---------------------------ccccchhhHHHHHHHHHHHHHHhHhCCEEeee
Confidence 43211 001 0 13499999999998877643 7999999
Q ss_pred ecccccCCC
Q psy11859 436 RPSIVLPSF 444 (851)
Q Consensus 436 Rp~~V~G~~ 444 (851)
-||.|-.+.
T Consensus 177 ~PG~v~T~~ 185 (241)
T d2a4ka1 177 LPGLIQTPM 185 (241)
T ss_dssp EECSBCCGG
T ss_pred ccCcCCCHH
Confidence 999986543
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.29 E-value=1.3e-11 Score=127.79 Aligned_cols=221 Identities=14% Similarity=0.101 Sum_probs=140.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||++-||+.+++.|++.| .+|++.+|..... .+..+++ .+ ....++.++.+|++
T Consensus 7 l~gK~alITGas~GIG~aia~~la~~G---a~V~i~~r~~~~~--~~~~~~~---------~~---~~g~~~~~~~~Dv~ 69 (260)
T d1h5qa_ 7 FVNKTIIVTGGNRGIGLAFTRAVAAAG---ANVAVIYRSAADA--VEVTEKV---------GK---EFGVKTKAYQCDVS 69 (260)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTT---EEEEEEESSCTTH--HHHHHHH---------HH---HHTCCEEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHH--HHHHHHH---------HH---HhCCceEEEEccCC
Confidence 689999999999999999999999999 7899999986542 2222221 11 12247889999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh----cCCceEEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK----MKKLVAFI 357 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~----~~~~~~fV 357 (851)
+++ +++.++ .++|++||+|+.... .+.++..+++|+.|+..+.+++.. .+.-..++
T Consensus 70 ~~~------~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~ 143 (260)
T d1h5qa_ 70 NTD------IVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIV 143 (260)
T ss_dssp CHH------HHHHHHHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CHH------HHHHHHHHHHHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEE
Confidence 987 655554 268999999986532 245778899999999998877643 22345566
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~ 432 (851)
.+|+......... .....|. ...|+.||+.-+.+.+..+ + ++.+
T Consensus 144 ~~~s~~~~~~~~~---~~~~~~~----------------------------~~~Y~asKaal~~lt~~lA~el~~~gIrv 192 (260)
T d1h5qa_ 144 VTSSMSSQIINQS---SLNGSLT----------------------------QVFYNSSKAACSNLVKGLAAEWASAGIRV 192 (260)
T ss_dssp EECCGGGTSCCEE---ETTEECS----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred Eeecccccccccc---ccccCcc----------------------------ccchhhhhhhHHHHHHHHHHHhchhCeEE
Confidence 6666433221100 0001111 1249999999998887654 3 8999
Q ss_pred EEEecccccCCCCCC-chhHhhhhcCCceE-EEEcccCceeEEE--eecC--CCCccEEEEeCC
Q psy11859 433 VIVRPSIVLPSFQEP-VPGWVDSLNGPVGV-LVASGKGVVRSMI--LNDL--STETQVFNISSN 490 (851)
Q Consensus 433 ~ivRp~~V~G~~~~p-~p~~i~~~~~~~~~-~~~~g~~v~~~~~--~~~~--~~~~~iyni~~~ 490 (851)
..|-||.|-.+.... .+.+.+.+....|+ -++...+++..+. +.++ --.|++..+++|
T Consensus 193 N~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG 256 (260)
T d1h5qa_ 193 NALSPGYVNTDQTAHMDKKIRDHQASNIPLNRFAQPEEMTGQAILLLSDHATYMTGGEYFIDGG 256 (260)
T ss_dssp EEEEECSBCCGGGGGSCHHHHHHHHHTCTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTT
T ss_pred eecCCCcccCcchhccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcchhCCCcCceEEECCC
Confidence 999999986554322 22333332211111 1233455555432 2222 235777777776
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.29 E-value=2.4e-11 Score=126.46 Aligned_cols=168 Identities=19% Similarity=0.247 Sum_probs=122.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||++-||..+++.|++.| .+|++.+|... +++++. +.+ ....++.++.+|++
T Consensus 4 L~gKvalITGas~GIG~aia~~la~~G---a~V~i~~r~~~------~~~~~~-----~~l-----~~~~~~~~~~~Dv~ 64 (268)
T d2bgka1 4 LQDKVAIITGGAGGIGETTAKLFVRYG---AKVVIADIADD------HGQKVC-----NNI-----GSPDVISFVHCDVT 64 (268)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH-----HHH-----CCTTTEEEEECCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHHH-----HHh-----cCCCceEEEEccCC
Confidence 689999999999999999999999999 78999998642 222211 111 11246888999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc---------chhHHHHHHHHHHHHHHHHHHHHh-c--CCceEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL---------EAELKENVAANTRGTQRLLDIALK-M--KKLVAF 356 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~---------~~~~~~~~~~Nv~Gt~~ll~~a~~-~--~~~~~f 356 (851)
+++ +++.++ .++|++||+||.... .+.++..+++|+.|+..+.+++.. + .+--++
T Consensus 65 ~~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~i 138 (268)
T d2bgka1 65 KDE------DVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSI 138 (268)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEE
T ss_pred CHH------HHHHHHHHHHHHcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCc
Confidence 886 666554 378999999986431 135778899999999999988754 2 234588
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~ 431 (851)
|.+||..+... ..+. ...|+.||+.-+.+.+..+ + ++.
T Consensus 139 i~iss~~~~~~---------~~~~----------------------------~~~Y~asKaal~~lt~~lA~el~~~gIr 181 (268)
T d2bgka1 139 VFTASISSFTA---------GEGV----------------------------SHVYTATKHAVLGLTTSLCTELGEYGIR 181 (268)
T ss_dssp EEECCGGGTCC---------CTTS----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred ccccccccccc---------cccc----------------------------ccccchhHHHHHhCHHHHHHHhChhCeE
Confidence 88888544211 1111 1249999999998887654 3 899
Q ss_pred EEEEecccccCCCC
Q psy11859 432 VVIVRPSIVLPSFQ 445 (851)
Q Consensus 432 ~~ivRp~~V~G~~~ 445 (851)
+..|-||.|-.+..
T Consensus 182 VN~I~PG~i~T~~~ 195 (268)
T d2bgka1 182 VNCVSPYIVASPLL 195 (268)
T ss_dssp EEEEEESCCSCCCC
T ss_pred EEecCCCCccChHH
Confidence 99999999877643
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=1.2e-11 Score=127.78 Aligned_cols=171 Identities=19% Similarity=0.206 Sum_probs=121.3
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
-++||+||||||++=||+.+++.|++.| .+|++..|... +++++ -+.+++.. ...++.++.+|+
T Consensus 7 ~lk~Kv~lITGas~GIG~aiA~~la~~G---~~Vv~~~r~~~------~l~~~-----~~~l~~~~--~~~~~~~~~~Dl 70 (257)
T d1xg5a_ 7 RWRDRLALVTGASGGIGAAVARALVQQG---LKVVGCARTVG------NIEEL-----AAECKSAG--YPGTLIPYRCDL 70 (257)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH-----HHHHHHTT--CSSEEEEEECCT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHH-----HHHHHhcC--CCceEEEEEccC
Confidence 3899999999999999999999999999 78899888632 22221 11222221 224789999999
Q ss_pred CCCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh----cC-CceE
Q psy11859 295 LQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK----MK-KLVA 355 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~----~~-~~~~ 355 (851)
++++ ++..++ .++|++||+|+.... .+.++..+++|+.|+..+.+++.. .+ .--+
T Consensus 71 s~~~------~v~~~v~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~ 144 (257)
T d1xg5a_ 71 SNEE------DILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGH 144 (257)
T ss_dssp TCHH------HHHHHHHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCc
Confidence 9876 555543 368999999997643 356778999999999988777643 22 2358
Q ss_pred EEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh------C-
Q psy11859 356 FIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK------T- 428 (851)
Q Consensus 356 fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~------~- 428 (851)
+|.+||..+.... |.+. ...|+.||+..+.+.+.++ +
T Consensus 145 Ii~isS~~~~~~~--------p~~~----------------------------~~~Y~~sKaal~~ltr~la~el~~~~~ 188 (257)
T d1xg5a_ 145 IININSMSGHRVL--------PLSV----------------------------THFYSATKYAVTALTEGLRQELREAQT 188 (257)
T ss_dssp EEEECCGGGTSCC--------SCGG----------------------------GHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEechHhcCCC--------CCcc----------------------------cHHHHHHHHHHHhCHHHHHHHHHhCCC
Confidence 9999996542110 1111 1239999999998876443 2
Q ss_pred CCCEEEEecccccCC
Q psy11859 429 KLPVVIVRPSIVLPS 443 (851)
Q Consensus 429 ~l~~~ivRp~~V~G~ 443 (851)
++.+..|-||.+-.+
T Consensus 189 ~I~vn~i~PG~i~t~ 203 (257)
T d1xg5a_ 189 HIRATCISPGVVETQ 203 (257)
T ss_dssp CCEEEEEEESCBCSS
T ss_pred CEEEEEEeCCCCCCh
Confidence 788999999877543
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=1.3e-11 Score=130.27 Aligned_cols=218 Identities=14% Similarity=0.173 Sum_probs=142.7
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcc-cCCCeEEEEc
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPA-QLSRLHIIEG 292 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~-~~~~v~~v~g 292 (851)
..++||++|||||++=||+.+++.|++.| .+|++.+|.... +++ .-+.|....+. ...++.++.+
T Consensus 8 g~L~gKvalITGas~GIG~aia~~la~~G---a~Vvi~~r~~~~------l~~-----~~~el~~~~~~~~~~~~~~~~~ 73 (297)
T d1yxma1 8 GLLQGQVAIVTGGATGIGKAIVKELLELG---SNVVIASRKLER------LKS-----AADELQANLPPTKQARVIPIQC 73 (297)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH------HHH-----HHHHHHHTSCTTCCCCEEEEEC
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHH------HHH-----HHHHHHhhhccccCceEEEEec
Confidence 45899999999999999999999999999 789999986432 211 12223333332 3458999999
Q ss_pred CCCCCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceE
Q psy11859 293 DILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVA 355 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~ 355 (851)
|+++++ ++..++ .++|++||+|+.... .+.++..+++|+.|+..+.+++... .+-.+
T Consensus 74 Dvs~~~------~v~~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ 147 (297)
T d1yxma1 74 NIRNEE------EVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGS 147 (297)
T ss_dssp CTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEE
T ss_pred cCCCHH------HHHHHHHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccc
Confidence 999986 555443 378999999986543 2467788999999999999887532 12356
Q ss_pred EEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CC
Q psy11859 356 FIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KL 430 (851)
Q Consensus 356 fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l 430 (851)
+|.+|++...+ .|. ...|+.||+.-+.+.+..+. ++
T Consensus 148 Ii~~ss~~~~~-----------~~~----------------------------~~~Y~asKaal~~ltk~lA~el~~~gI 188 (297)
T d1yxma1 148 IVNIIVPTKAG-----------FPL----------------------------AVHSGAARAGVYNLTKSLALEWACSGI 188 (297)
T ss_dssp EEEECCCCTTC-----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHTGGGTE
T ss_pred ccccccccccc-----------ccc----------------------------cccchhHHHHHHHHHHHHHHHhcccCc
Confidence 77776642211 111 13499999999888876643 89
Q ss_pred CEEEEecccccCCCCCC-----chhHhhhhcCCceE-EEEcccCceeEEE--eecC--CCCccEEEEeCC
Q psy11859 431 PVVIVRPSIVLPSFQEP-----VPGWVDSLNGPVGV-LVASGKGVVRSMI--LNDL--STETQVFNISSN 490 (851)
Q Consensus 431 ~~~ivRp~~V~G~~~~p-----~p~~i~~~~~~~~~-~~~~g~~v~~~~~--~~~~--~~~~~iyni~~~ 490 (851)
.+..|-||.|..+.... -+.+.+.+....|+ -++...+++.++. +.++ --.|++..+++|
T Consensus 189 rVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~plgR~g~pedvA~~v~fL~Sd~s~~iTG~~i~VDGG 258 (297)
T d1yxma1 189 RINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGG 258 (297)
T ss_dssp EEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGSTTSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred eEEEeeeCcCcCcchhhhccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCcCCcEEEeCcC
Confidence 99999999987653211 12233332211110 0122345544432 2222 236888888887
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.3e-11 Score=127.42 Aligned_cols=165 Identities=16% Similarity=0.152 Sum_probs=119.2
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
+||++|||||++=||+.+++.|++.| .+|++.+|.... +.+. -..+.+..+ ..++.++.+|+++
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~G---a~V~i~~r~~~~------~~~~-----~~~l~~~~~--~~~~~~~~~Dv~~ 65 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKG---AKVALVDWNLEA------GVQC-----KAALHEQFE--PQKTLFIQCDVAD 65 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH------HHHH-----HHHHTTTSC--GGGEEEEECCTTS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHH------HHHH-----HHHHHHhcC--CCcEEEEEeecCC
Confidence 69999999999999999999999999 789999986432 2111 011111111 2378899999999
Q ss_pred CcCCCCHHHHHHHh-------cCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhc-C-----CceEEEEeeeee
Q psy11859 297 ANLGIKDSDLLMLQ-------EEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKM-K-----KLVAFIHFSTAF 363 (851)
Q Consensus 297 ~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~-~-----~~~~fV~vSTa~ 363 (851)
++ +++.++ .++|++||+|+... ..++++.+++|+.|+.++..++... . .--++|.+||..
T Consensus 66 ~~------~v~~~~~~~~~~~G~iDilVnnAg~~~-~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~ 138 (254)
T d2gdza1 66 QQ------QLRDTFRKVVDHFGRLDILVNNAGVNN-EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLA 138 (254)
T ss_dssp HH------HHHHHHHHHHHHHSCCCEEEECCCCCC-SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred HH------HHHHHHHHHHHHcCCcCeecccccccc-cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHh
Confidence 86 555544 36899999999764 4567889999999998888777542 1 125699999965
Q ss_pred eeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHH------HHhC-CCCEEEEe
Q psy11859 364 CHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVD------EYKT-KLPVVIVR 436 (851)
Q Consensus 364 ~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~------~~~~-~l~~~ivR 436 (851)
+.- +.|.. ..|+.||+.-+.+.+ ++++ ++.+..|-
T Consensus 139 ~~~----------~~~~~----------------------------~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~ 180 (254)
T d2gdza1 139 GLM----------PVAQQ----------------------------PVYCASKHGIVGFTRSAALAANLMNSGVRLNAIC 180 (254)
T ss_dssp GTS----------CCTTC----------------------------HHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred hcc----------CCCCc----------------------------cchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 421 12221 249999998887765 3334 89999999
Q ss_pred cccccC
Q psy11859 437 PSIVLP 442 (851)
Q Consensus 437 p~~V~G 442 (851)
||.|--
T Consensus 181 PG~i~T 186 (254)
T d2gdza1 181 PGFVNT 186 (254)
T ss_dssp ESCBSS
T ss_pred cCCCCC
Confidence 998854
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.25 E-value=4.5e-11 Score=124.61 Aligned_cols=173 Identities=17% Similarity=0.196 Sum_probs=122.2
Q ss_pred chhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEE
Q psy11859 211 DVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHII 290 (851)
Q Consensus 211 ~i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v 290 (851)
+-+.-++||+||||||+|=||+.+++.|++.| .+|++.+|.... ..+.+. +.++ ....++.++
T Consensus 11 ~~~~sL~gK~~lITGas~GIG~aia~~la~~G---a~Vvi~~~~~~~--~~~~~~--------~~~~----~~g~~~~~~ 73 (272)
T d1g0oa_ 11 PQSASLEGKVALVTGAGRGIGREMAMELGRRG---CKVIVNYANSTE--SAEEVV--------AAIK----KNGSDAACV 73 (272)
T ss_dssp GGGGCCTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHH--------HHHH----HTTCCEEEE
T ss_pred CCCcCCCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEeCCchH--HHHHHH--------HHHH----hhCCceeeE
Confidence 34445899999999999999999999999999 788888876432 111111 1111 223478899
Q ss_pred EcCCCCCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc-CCceE
Q psy11859 291 EGDILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM-KKLVA 355 (851)
Q Consensus 291 ~gDi~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~ 355 (851)
.+|+++++ ++..++ .++|+++|.|+.... .+.+...+++|+.|+..+.+++... ..-.+
T Consensus 74 ~~D~~~~~------~v~~~~~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~ 147 (272)
T d1g0oa_ 74 KANVGVVE------DIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGR 147 (272)
T ss_dssp ECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCE
T ss_pred eCCCCCHH------HHHHHHHHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccc
Confidence 99999876 555443 368999999997643 2456788999999999999998752 22346
Q ss_pred EEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CC
Q psy11859 356 FIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KL 430 (851)
Q Consensus 356 fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l 430 (851)
.+.++|.++... +.+. ...|+.||+.-+.+++..+ + ++
T Consensus 148 ~i~i~s~~~~~~---------~~~~----------------------------~~~Y~asKaal~~ltk~lA~e~~~~gI 190 (272)
T d1g0oa_ 148 LILMGSITGQAK---------AVPK----------------------------HAVYSGSKGAIETFARCMAIDMADKKI 190 (272)
T ss_dssp EEEECCGGGTCS---------SCSS----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred cccccccccccc---------cccc----------------------------hhhHHHHHHHHHHHHHHHHHHhchhCe
Confidence 666666432110 1111 1349999999888886554 3 89
Q ss_pred CEEEEecccccCC
Q psy11859 431 PVVIVRPSIVLPS 443 (851)
Q Consensus 431 ~~~ivRp~~V~G~ 443 (851)
.+..|.||.|-.+
T Consensus 191 rVN~I~PG~v~T~ 203 (272)
T d1g0oa_ 191 TVNVVAPGGIKTD 203 (272)
T ss_dssp EEEEEEECCBSSH
T ss_pred EEEEEccCCcCCh
Confidence 9999999998643
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.24 E-value=1.6e-11 Score=126.52 Aligned_cols=163 Identities=18% Similarity=0.185 Sum_probs=119.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||++-||+.+++.|++.| .+|++.+|... +++++ .++ ...+..++.+|++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G---a~V~~~~~~~~------~~~~~---------~~~---~~~~~~~~~~Dv~ 62 (253)
T d1hxha_ 4 LQGKVALVTGGASGVGLEVVKLLLGEG---AKVAFSDINEA------AGQQL---------AAE---LGERSMFVRHDVS 62 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEECSCHH------HHHHH---------HHH---HCTTEEEECCCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHH---------HHH---hCCCeEEEEeecC
Confidence 689999999999999999999999999 78999888542 22221 111 1247788999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh-cC-CceEEEEe
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK-MK-KLVAFIHF 359 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~-~~-~~~~fV~v 359 (851)
+++ +.+.++ ..+|++||+|+.... .+.++..+++|+.|+..+.+++.. +. +--++|++
T Consensus 63 ~~~------~~~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~i 136 (253)
T d1hxha_ 63 SEA------DWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINM 136 (253)
T ss_dssp CHH------HHHHHHHHHHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CHH------HHHHHHHHHHHHhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecc
Confidence 876 555443 368999999997543 246778999999999998888754 21 23689999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-------CCCE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-------KLPV 432 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-------~l~~ 432 (851)
||..+.. +.|.. ..|+.||+..+.+.+..+. ++.+
T Consensus 137 sS~~~~~----------~~~~~----------------------------~~Y~asKaal~~lt~~lA~e~~~~g~~IrV 178 (253)
T d1hxha_ 137 ASVSSWL----------PIEQY----------------------------AGYSASKAAVSALTRAAALSCRKQGYAIRV 178 (253)
T ss_dssp CCGGGTS----------CCTTB----------------------------HHHHHHHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred cchhhhc----------Ccccc----------------------------ccccchhHHHHHHHHHHHHHHhhcCCCEEE
Confidence 9965432 11111 2499999998888765532 3788
Q ss_pred EEEecccccCC
Q psy11859 433 VIVRPSIVLPS 443 (851)
Q Consensus 433 ~ivRp~~V~G~ 443 (851)
..|-||.|-.+
T Consensus 179 N~I~PG~i~T~ 189 (253)
T d1hxha_ 179 NSIHPDGIYTP 189 (253)
T ss_dssp EEEEESEECCH
T ss_pred EEEeECCCcCH
Confidence 89999988644
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.24 E-value=3.2e-11 Score=124.83 Aligned_cols=168 Identities=18% Similarity=0.150 Sum_probs=116.9
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
.++||+||||||+|=||+++++.|++.| .+|++..|.... ..+++.+ +..+...++.++.+|+
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G---~~Vvi~~~~~~~--~~~~~~~------------~~~~~g~~~~~~~~D~ 65 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRG---ASVVVNYGSSSK--AAEEVVA------------ELKKLGAQGVAIQADI 65 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHHH------------HHHHTTCCEEEEECCT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEcCCChH--HHHHHHH------------HHHHcCCCceEecCCC
Confidence 3689999999999999999999999999 678877665432 1122211 1112234789999999
Q ss_pred CCCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEe
Q psy11859 295 LQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM-KKLVAFIHF 359 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~v 359 (851)
++++ +...++ ..+|++||+|+.... .+.++..+++|+.|..++++++... .+-...+.+
T Consensus 66 ~~~~------~v~~~~~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii 139 (259)
T d1ja9a_ 66 SKPS------EVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT 139 (259)
T ss_dssp TSHH------HHHHHHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence 9876 555443 268999999997543 2456788999999999999988653 222345555
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~i 434 (851)
+|..+.- .+.|.. ..|+.||+.-+.+++..+ . ++.+..
T Consensus 140 ~s~~~~~---------~~~~~~----------------------------~~Y~asK~al~~l~r~lA~e~~~~gIrvN~ 182 (259)
T d1ja9a_ 140 SSIAAVM---------TGIPNH----------------------------ALYAGSKAAVEGFCRAFAVDCGAKGVTVNC 182 (259)
T ss_dssp CCGGGTC---------CSCCSC----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEE
T ss_pred ccccccc---------cCCCCc----------------------------hhHHHHHHHHHHHHHHHHHHHhhcCeEEec
Confidence 5432210 011221 249999988887776654 3 899999
Q ss_pred EecccccC
Q psy11859 435 VRPSIVLP 442 (851)
Q Consensus 435 vRp~~V~G 442 (851)
|.||.|--
T Consensus 183 I~PG~i~T 190 (259)
T d1ja9a_ 183 IAPGGVKT 190 (259)
T ss_dssp EEECCBSS
T ss_pred cCcCCccC
Confidence 99999853
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.24 E-value=3.2e-11 Score=125.73 Aligned_cols=169 Identities=13% Similarity=0.129 Sum_probs=116.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||++=||+.++++|++.| .+|++.+|.... .+.+.+ .+.+. .....++.++.+|++
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~G---a~V~l~~r~~~~---l~~~~~--------~l~~~-~~~~~~~~~~~~Dvs 67 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFAQEG---ANVTITGRSSER---LEETRQ--------IILKS-GVSEKQVNSVVADVT 67 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHH--------HHHTT-TCCGGGEEEEECCTT
T ss_pred CCCCEEEEeCcCcHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHH--------HHHhc-CCCCCceEEEEccCC
Confidence 689999999999999999999999999 789999986432 111111 11111 111247899999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc--------c---hhHHHHHHHHHHHHHHHHHHHHhc---CCce
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL--------E---AELKENVAANTRGTQRLLDIALKM---KKLV 354 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~--------~---~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~ 354 (851)
+++ +++.++ .++|++||+|+.... + +.++..+++|+.|+..+.+++... +.=.
T Consensus 68 ~~~------~v~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~ 141 (272)
T d1xkqa_ 68 TED------GQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGE 141 (272)
T ss_dssp SHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE
T ss_pred CHH------HHHHHHHHHHHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCc
Confidence 986 555544 368999999997532 1 136788999999999999887542 1123
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~ 429 (851)
.++.+||..+.. +.|.. ..|+.||+.-+.+.+..+ + +
T Consensus 142 iI~~~Ss~a~~~----------~~~~~----------------------------~~Y~asKaal~~ltk~lA~el~~~g 183 (272)
T d1xkqa_ 142 IVNVSSIVAGPQ----------AQPDF----------------------------LYYAIAKAALDQYTRSTAIDLAKFG 183 (272)
T ss_dssp EEEECCGGGSSS----------CCCSS----------------------------HHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccccchhcccc----------CCCCc----------------------------chhhhHHHHHHHHHHHHHHHhcccC
Confidence 344444432211 11211 249999999888876654 3 8
Q ss_pred CCEEEEecccccCC
Q psy11859 430 LPVVIVRPSIVLPS 443 (851)
Q Consensus 430 l~~~ivRp~~V~G~ 443 (851)
+.+..|-||.|-.+
T Consensus 184 IrVN~I~PG~i~T~ 197 (272)
T d1xkqa_ 184 IRVNSVSPGMVETG 197 (272)
T ss_dssp CEEEEEEECCBCSS
T ss_pred eEEEEEeeCCCcch
Confidence 99999999988644
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.23 E-value=4.4e-11 Score=124.72 Aligned_cols=169 Identities=14% Similarity=0.127 Sum_probs=119.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||++=||+.++++|++.| .+|++.+|.... .+.+. +.+.+.. ....++..+.+|++
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~G---a~V~~~~r~~~~---l~~~~--------~~i~~~~-~~~~~~~~~~~Dv~ 66 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEG---AQVTITGRNEDR---LEETK--------QQILKAG-VPAEKINAVVADVT 66 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHH--------HHHHHTT-CCGGGEEEEECCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHH--------HHHHHcC-CCCcceEEEEeeCC
Confidence 589999999999999999999999999 789999986422 11111 1111111 11247899999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc---------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL---------EAELKENVAANTRGTQRLLDIALKM---KKLVAF 356 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~---------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~f 356 (851)
+++ +++.++ ..+|++||+||.... .+.++..+++|+.|+..+.+++... .+-..+
T Consensus 67 ~~~------~v~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~i 140 (274)
T d1xhla_ 67 EAS------GQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIV 140 (274)
T ss_dssp SHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CHH------HHHHHHHHHHHHcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccc
Confidence 986 555543 268999999985321 1346788999999999998887542 234567
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~ 431 (851)
+.+||..... +.|.. ..|+.||+.-+.+.+..+ + ++.
T Consensus 141 i~~ss~~~~~----------~~~~~----------------------------~~Y~asKaal~~ltk~lA~ela~~gIr 182 (274)
T d1xhla_ 141 NVSSIVAGPQ----------AHSGY----------------------------PYYACAKAALDQYTRCTAIDLIQHGVR 182 (274)
T ss_dssp EECCGGGSSS----------CCTTS----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred cchhhhhccc----------cCCCC----------------------------ceehhhhhHHHHHHHHHHHHHhHhCCc
Confidence 7777743321 11111 239999999888886554 3 899
Q ss_pred EEEEecccccCC
Q psy11859 432 VVIVRPSIVLPS 443 (851)
Q Consensus 432 ~~ivRp~~V~G~ 443 (851)
+..|-||.|--+
T Consensus 183 VN~I~PG~i~T~ 194 (274)
T d1xhla_ 183 VNSVSPGAVATG 194 (274)
T ss_dssp EEEEEECCBCSS
T ss_pred eeeeccCCCcCc
Confidence 999999998654
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=6e-11 Score=124.38 Aligned_cols=169 Identities=21% Similarity=0.198 Sum_probs=120.3
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
.|.||||||++=||..++++|++.|.+|..|+...|.... .+++.+.. ++......++..+.+|++|+
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~---~~~l~~~~---------~~~~~~~~~~~~~~~Dv~~~ 69 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKT---QGRLWEAA---------RALACPPGSLETLQLDVRDS 69 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGG---THHHHHHH---------HHTTCCTTSEEEEECCTTCH
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhh---hHHHHHHH---------HHHhccCCceEEEeccccch
Confidence 4678999999999999999999999766666666665433 22332211 11122345899999999998
Q ss_pred cCCCCHHHHHHHhc-----CccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHh-c--CCceEEEEeeee
Q psy11859 298 NLGIKDSDLLMLQE-----EVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALK-M--KKLVAFIHFSTA 362 (851)
Q Consensus 298 ~lgls~~~~~~~~~-----~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~-~--~~~~~fV~vSTa 362 (851)
+ +...+++ .+|+++|+|+.... .+.++..+++|+.|+.++.+++.. + .+--++|++||.
T Consensus 70 ~------~~~~~~~~~~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~ 143 (285)
T d1jtva_ 70 K------SVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSV 143 (285)
T ss_dssp H------HHHHHHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEG
T ss_pred H------hhhhhhhhccccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEech
Confidence 7 6665543 58999999987643 245678899999999999888743 1 124689999996
Q ss_pred eeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEEEEec
Q psy11859 363 FCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVVIVRP 437 (851)
Q Consensus 363 ~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ivRp 437 (851)
.+.. +.|.. ..|+.||+.-+.+.+..+ . |+.+..|.|
T Consensus 144 ~g~~----------~~~~~----------------------------~~Y~asKaal~~l~~~la~El~~~gIrVn~V~P 185 (285)
T d1jtva_ 144 GGLM----------GLPFN----------------------------DVYCASKFALEGLCESLAVLLLPFGVHLSLIEC 185 (285)
T ss_dssp GGTS----------CCTTC----------------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred hhcC----------CCCCc----------------------------hHHHHHHHHHHHHHHHHHHHhhccCcEEEEEec
Confidence 5432 12221 249999998887776553 3 899999999
Q ss_pred ccccC
Q psy11859 438 SIVLP 442 (851)
Q Consensus 438 ~~V~G 442 (851)
|.|--
T Consensus 186 G~v~T 190 (285)
T d1jtva_ 186 GPVHT 190 (285)
T ss_dssp CCBCC
T ss_pred CCCCC
Confidence 98753
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.23 E-value=2.1e-11 Score=124.97 Aligned_cols=164 Identities=18% Similarity=0.189 Sum_probs=117.7
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
+.||||||++=||..++++|++.| .+|++.++.... ..+.+.+ .++ ....++.++.+|+++++
T Consensus 2 pV~lITGas~GIG~a~a~~la~~G---a~V~i~~~~~~~--~~~~~~~--------~~~----~~g~~~~~~~~Dv~~~~ 64 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAG---CKVLVNYARSAK--AAEEVSK--------QIE----AYGGQAITFGGDVSKEA 64 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHHH--------HHH----HHTCEEEEEECCTTSHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCCHH--HHHHHHH--------HHH----HcCCcEEEEeCCCCCHH
Confidence 369999999999999999999999 678776554321 1122211 111 12347889999999986
Q ss_pred CCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEeee
Q psy11859 299 LGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHFST 361 (851)
Q Consensus 299 lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~vST 361 (851)
+++.++ .++|++||+|+.... .+.++..+++|+.|+..+.+++... .+--++|++||
T Consensus 65 ------~v~~~~~~~~~~~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS 138 (244)
T d1edoa_ 65 ------DVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIAS 138 (244)
T ss_dssp ------HHHHHHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred ------HHHHHHHHHHHHcCCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcC
Confidence 555543 368999999997643 2467789999999999998887542 13468999999
Q ss_pred eeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEe
Q psy11859 362 AFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVR 436 (851)
Q Consensus 362 a~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivR 436 (851)
..+.. +.|.. ..|+.||+.-+.+.+..+. ++.+..|-
T Consensus 139 ~~~~~----------~~~~~----------------------------~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~ 180 (244)
T d1edoa_ 139 VVGLI----------GNIGQ----------------------------ANYAAAKAGVIGFSKTAAREGASRNINVNVVC 180 (244)
T ss_dssp THHHH----------CCTTC----------------------------HHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEE
T ss_pred hhhcC----------CCCCC----------------------------HHHHHHHHHHHHChHHHHHHHhhhCcEEEEEe
Confidence 65431 11111 2499999999888876543 89999999
Q ss_pred cccccCC
Q psy11859 437 PSIVLPS 443 (851)
Q Consensus 437 p~~V~G~ 443 (851)
||.|--+
T Consensus 181 PG~i~T~ 187 (244)
T d1edoa_ 181 PGFIASD 187 (244)
T ss_dssp ECSBCSH
T ss_pred cceeccH
Confidence 9988644
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.23 E-value=2.2e-11 Score=127.18 Aligned_cols=210 Identities=19% Similarity=0.216 Sum_probs=137.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||++-||+.++++|++.| .+|++.+|.. ++++++.+ + ...++..+.+|++
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~G---a~V~i~~r~~------~~l~~~~~---------~---~~~~~~~~~~Dv~ 61 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFVAEG---AKVAVLDKSA------ERLAELET---------D---HGDNVLGIVGDVR 61 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCH------HHHHHHHH---------H---HGGGEEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCH------HHHHHHHH---------H---cCCCeeEEecccc
Confidence 589999999999999999999999999 7899998863 33333211 1 1237889999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCcc------------hhHHHHHHHHHHHHHHHHHHHHhc--CCce
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKLE------------AELKENVAANTRGTQRLLDIALKM--KKLV 354 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~~------------~~~~~~~~~Nv~Gt~~ll~~a~~~--~~~~ 354 (851)
+++ +.+.++ ..+|++||+|+..... +.++..+++|+.|+..+.+++... .+--
T Consensus 62 ~~~------~~~~~~~~~~~~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~g 135 (276)
T d1bdba_ 62 SLE------DQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASRG 135 (276)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC
T ss_pred cHH------HHHHHHHHHHHHhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence 876 555443 3789999999964321 236788999999999998887531 1124
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----CCC
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----TKL 430 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~~l 430 (851)
++|++||..+.- +.|.. ..|+.||+.-+.+.+..+ +++
T Consensus 136 ~iI~i~S~~~~~----------~~~~~----------------------------~~Y~asKaal~~ltr~lA~ela~~I 177 (276)
T d1bdba_ 136 NVIFTISNAGFY----------PNGGG----------------------------PLYTAAKHAIVGLVRELAFELAPYV 177 (276)
T ss_dssp EEEEECCGGGTS----------TTSSC----------------------------HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred Cceeeeechhcc----------CCCCC----------------------------chHHHHHHHHHHHHHHHHHHhhcce
Confidence 677777753321 12222 239999999888776654 378
Q ss_pred CEEEEecccccCCCCCCc-----------hhHhhhhcCCceE-EEEcccCceeEE--Eee-cC--CCCccEEEEeCC
Q psy11859 431 PVVIVRPSIVLPSFQEPV-----------PGWVDSLNGPVGV-LVASGKGVVRSM--ILN-DL--STETQVFNISSN 490 (851)
Q Consensus 431 ~~~ivRp~~V~G~~~~p~-----------p~~i~~~~~~~~~-~~~~g~~v~~~~--~~~-~~--~~~~~iyni~~~ 490 (851)
.+..|.||.|--+...+. +.+.+.+....|+ -++...+++.++ ++. ++ --.|++.++++|
T Consensus 178 rVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~peeva~~v~fL~S~~~a~~itG~~i~VDGG 254 (276)
T d1bdba_ 178 RVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLPIGRMPEVEEYTGAYVFFATRGDAAPATGALLNYDGG 254 (276)
T ss_dssp EEEEEEECCCCSCCCCCGGGC---------CHHHHHTTTCTTSSCCCGGGGSHHHHHHHCHHHHTTCSSCEEEESSS
T ss_pred EEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCCcccCCeeCcEEEECcC
Confidence 999999999865432221 1122222222221 022345665543 222 22 246888888877
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.22 E-value=3.6e-11 Score=124.75 Aligned_cols=169 Identities=15% Similarity=0.173 Sum_probs=116.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||++=||+.++++|++.| .+|++.+|.... ++++ -+.|.... ....++.++.+|++
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~G---a~V~~~~r~~~~------l~~~-----~~~l~~~~-~~~~~~~~~~~Dvt 67 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREG---AKVTITGRHAER------LEET-----RQQILAAG-VSEQNVNSVVADVT 67 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHH------HHHH-----HHHHHHTT-CCGGGEEEEECCTT
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCC---CEEEEEECCHHH------HHHH-----HHHHHhcC-CCcCceEEEEccCC
Confidence 689999999999999999999999999 789999987432 2211 11122111 11237899999999
Q ss_pred CCcCCCCHHHHHHHh-------cCccEEEEccccCCc-----------chhHHHHHHHHHHHHHHHHHHHHhc-C-CceE
Q psy11859 296 QANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-----------EAELKENVAANTRGTQRLLDIALKM-K-KLVA 355 (851)
Q Consensus 296 ~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-----------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~-~~~~ 355 (851)
+++ +.+.++ .++|++||+||.... .+.++..+++|+.|+..+.+++... . +-..
T Consensus 68 ~~~------~v~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~ 141 (264)
T d1spxa_ 68 TDA------GQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGE 141 (264)
T ss_dssp SHH------HHHHHHHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE
T ss_pred CHH------HHHHHHHHHHHHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCc
Confidence 886 555544 368999999986421 1356788999999999998887642 1 1234
Q ss_pred EEEeeee-eeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-C
Q psy11859 356 FIHFSTA-FCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-K 429 (851)
Q Consensus 356 fV~vSTa-~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~ 429 (851)
.|.++|. .... +.|.. ..|+.||+.-+.+.+..+ + +
T Consensus 142 iI~~~S~~~~~~----------~~~~~----------------------------~~Y~asKaal~~lt~~lA~el~~~g 183 (264)
T d1spxa_ 142 IVNISSIASGLH----------ATPDF----------------------------PYYSIAKAAIDQYTRNTAIDLIQHG 183 (264)
T ss_dssp EEEECCTTSSSS----------CCTTS----------------------------HHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred ceeeeeeccccc----------cCCCc----------------------------hhhhhhhhhHHHHHHHHHHHhcccC
Confidence 5555553 2211 12221 239999999988877654 3 8
Q ss_pred CCEEEEecccccCC
Q psy11859 430 LPVVIVRPSIVLPS 443 (851)
Q Consensus 430 l~~~ivRp~~V~G~ 443 (851)
+.+..|-||.|--+
T Consensus 184 IrVN~V~PG~v~T~ 197 (264)
T d1spxa_ 184 IRVNSISPGLVATG 197 (264)
T ss_dssp CEEEEEEECCBCCC
T ss_pred eEEEEEeeCCCCCc
Confidence 99999999988654
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.21 E-value=1.3e-10 Score=118.09 Aligned_cols=159 Identities=14% Similarity=0.116 Sum_probs=116.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||+||||||++-||+.+++.|++.| .+|++.+|.+ +.+++ ...+++.+|++
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~G---a~V~~~~r~~------~~l~~------------------~~~~~~~~Dv~ 54 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEG---AEVTICARNE------ELLKR------------------SGHRYVVCDLR 54 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCH------HHHHH------------------TCSEEEECCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCH------HHHHh------------------cCCcEEEcchH
Confidence 579999999999999999999999999 7899998863 22221 13456789998
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEeeeeeee
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHFSTAFCH 365 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~vSTa~~~ 365 (851)
+.- +....-+.++|++||+||.... .+.++..+++|+.|+..+.+++... .+--++|.+||..+.
T Consensus 55 ~~~-----~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~ 129 (234)
T d1o5ia_ 55 KDL-----DLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVI 129 (234)
T ss_dssp TCH-----HHHHHHSCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred HHH-----HHHHHHhCCCcEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccccccccccccccccc
Confidence 642 3444555689999999996543 2457788999999999888877432 124578888885432
Q ss_pred CCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-CCCEEEEecccc
Q psy11859 366 PDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-KLPVVIVRPSIV 440 (851)
Q Consensus 366 ~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~l~~~ivRp~~V 440 (851)
.. .|. ...|+.||+.-+.+.+..+ + ++.+..|-||.|
T Consensus 130 ~~----------~~~----------------------------~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v 171 (234)
T d1o5ia_ 130 SP----------IEN----------------------------LYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWT 171 (234)
T ss_dssp SC----------CTT----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSB
T ss_pred cc----------ccc----------------------------cccchhHHHHHHHHHHHHHHHhcccCeEEeecccCcc
Confidence 21 111 1349999998887776654 3 899999999988
Q ss_pred cCCC
Q psy11859 441 LPSF 444 (851)
Q Consensus 441 ~G~~ 444 (851)
-.+.
T Consensus 172 ~T~~ 175 (234)
T d1o5ia_ 172 ETER 175 (234)
T ss_dssp CCTT
T ss_pred chhh
Confidence 7654
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.21 E-value=1.7e-10 Score=118.50 Aligned_cols=168 Identities=21% Similarity=0.264 Sum_probs=115.7
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+||||||++=||..++++|++...+...|++..|...... .+.++ .+ ...++.++.+|++|++
T Consensus 3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~---~~~~~---------~~----~~~~~~~~~~Dvs~~~ 66 (248)
T d1snya_ 3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK---ELEDL---------AK----NHSNIHILEIDLRNFD 66 (248)
T ss_dssp SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH---HHHHH---------HH----HCTTEEEEECCTTCGG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH---HHHHH---------Hh----cCCcEEEEEEEeccHH
Confidence 78999999999999999999863222378999999876542 22221 11 1248999999999987
Q ss_pred CCCCHHHHHHHh---------cCccEEEEccccCCc----c----hhHHHHHHHHHHHHHHHHHHHHhc-----------
Q psy11859 299 LGIKDSDLLMLQ---------EEVSVVFNGAASLKL----E----AELKENVAANTRGTQRLLDIALKM----------- 350 (851)
Q Consensus 299 lgls~~~~~~~~---------~~vd~ViH~AA~~~~----~----~~~~~~~~~Nv~Gt~~ll~~a~~~----------- 350 (851)
+++.++ .++|++||+||.... . +.++..+++|+.|+..+.+++...
T Consensus 67 ------~v~~~~~~i~~~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~ 140 (248)
T d1snya_ 67 ------AYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQ 140 (248)
T ss_dssp ------GHHHHHHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred ------HHHHHHhhhHHHhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccc
Confidence 333221 358999999996432 1 236678999999999988876431
Q ss_pred ---CCceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh
Q psy11859 351 ---KKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK 427 (851)
Q Consensus 351 ---~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~ 427 (851)
..-.++|.+||..+.-.. .+.|.. ..|+.||+.-..+....+
T Consensus 141 ~~~~~~g~ii~i~S~~g~~~~-------~~~~~~----------------------------~~Y~aSKaal~~lt~~la 185 (248)
T d1snya_ 141 PMGVGRAAIINMSSILGSIQG-------NTDGGM----------------------------YAYRTSKSALNAATKSLS 185 (248)
T ss_dssp CSSTTTCEEEEECCGGGCSTT-------CCSCCC----------------------------HHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccCC-------CCCCCh----------------------------HHHHHHHHHHHHHHHHHH
Confidence 023578999885432110 011111 249999998888776543
Q ss_pred ----C-CCCEEEEecccccCC
Q psy11859 428 ----T-KLPVVIVRPSIVLPS 443 (851)
Q Consensus 428 ----~-~l~~~ivRp~~V~G~ 443 (851)
+ ++.+..+-||.|--+
T Consensus 186 ~e~~~~gI~vn~v~PG~v~T~ 206 (248)
T d1snya_ 186 VDLYPQRIMCVSLHPGWVKTD 206 (248)
T ss_dssp HHHGGGTCEEEEECCCSBCST
T ss_pred HHhCCCCeEEEEcCCCcccCC
Confidence 3 899999999988544
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.20 E-value=3.4e-11 Score=123.01 Aligned_cols=166 Identities=18% Similarity=0.253 Sum_probs=116.1
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCc----cEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDI----GKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v----~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
+.||||||++=||+.++++|++.|.++ ..|.+..|.... ++++ .++......++.++.+|+
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~------l~~~---------~~~~~~~g~~~~~~~~Dv 66 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAAD------LEKI---------SLECRAEGALTDTITADI 66 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHH------HHHH---------HHHHHTTTCEEEEEECCT
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHH------HHHH---------HHHHHhcCCcEEEEEecC
Confidence 358999999999999999999998431 136777775422 2211 111112234788999999
Q ss_pred CCCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEE
Q psy11859 295 LQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFI 357 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV 357 (851)
+|++ +++.++ .++|++||+|+.... .+.++..+++|+.|+..+.+++... .+--++|
T Consensus 67 t~~~------~v~~~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii 140 (240)
T d2bd0a1 67 SDMA------DVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIF 140 (240)
T ss_dssp TSHH------HHHHHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceE
Confidence 9986 555443 268999999997543 2467788999999999998888642 1236899
Q ss_pred EeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHH----hC-CCCE
Q psy11859 358 HFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY----KT-KLPV 432 (851)
Q Consensus 358 ~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~----~~-~l~~ 432 (851)
++||..+... .|.. ..|+.||+.-+.+.+.. .+ ++.+
T Consensus 141 ~isS~~~~~~----------~~~~----------------------------~~Y~asK~al~~lt~~la~el~~~gIrv 182 (240)
T d2bd0a1 141 FITSVAATKA----------FRHS----------------------------SIYCMSKFGQRGLVETMRLYARKCNVRI 182 (240)
T ss_dssp EECCGGGTSC----------CTTC----------------------------HHHHHHHHHHHHHHHHHHHHHTTTTEEE
T ss_pred EEechhhcCC----------CCCC----------------------------hHHHHHHHHHHHHHHHHHHHhCcCCeEE
Confidence 9999654321 1211 24999998877777654 33 8999
Q ss_pred EEEecccccCC
Q psy11859 433 VIVRPSIVLPS 443 (851)
Q Consensus 433 ~ivRp~~V~G~ 443 (851)
..|-||.|--+
T Consensus 183 n~i~PG~v~T~ 193 (240)
T d2bd0a1 183 TDVQPGAVYTP 193 (240)
T ss_dssp EEEEECCBCST
T ss_pred EEeeeCcccCc
Confidence 99999988654
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=1e-10 Score=119.74 Aligned_cols=165 Identities=17% Similarity=0.150 Sum_probs=119.6
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||+|-||+.+++.|++.| .+|++.+|.+ ++++++.+ ...+.....|+.
T Consensus 4 l~gK~alITGas~GIG~aia~~la~~G---~~Vi~~~r~~------~~l~~~~~--------------~~~~~~~~~d~~ 60 (245)
T d2ag5a1 4 LDGKVIILTAAAQGIGQAAALAFAREG---AKVIATDINE------SKLQELEK--------------YPGIQTRVLDVT 60 (245)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCH------HHHGGGGG--------------STTEEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEeCCH------HHHHHHHh--------------ccCCceeeeecc
Confidence 789999999999999999999999999 7899999863 23332211 236778888887
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEeeeeeee
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIALKM---KKLVAFIHFSTAFCH 365 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~vSTa~~~ 365 (851)
+.+. .+.....+.++|++||+||..... +.++..+++|+.|+..+.+++... ..--++|.+||..+.
T Consensus 61 ~~~~---~~~~~~~~~~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~ 137 (245)
T d2ag5a1 61 KKKQ---IDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASS 137 (245)
T ss_dssp CHHH---HHHHHHHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTT
T ss_pred cccc---ccccccccccceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhc
Confidence 6541 112223345899999999976542 467788999999999998887641 134688999884321
Q ss_pred CCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEecccc
Q psy11859 366 PDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVRPSIV 440 (851)
Q Consensus 366 ~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivRp~~V 440 (851)
..+.+. ...|+.+|+.-+.+++..+. ++.+..|.||.|
T Consensus 138 ---------~~~~~~----------------------------~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i 180 (245)
T d2ag5a1 138 ---------VKGVVN----------------------------RCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTV 180 (245)
T ss_dssp ---------TBCCTT----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCE
T ss_pred ---------cCCccc----------------------------hhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeecee
Confidence 001111 23499999999988876643 899999999988
Q ss_pred cCC
Q psy11859 441 LPS 443 (851)
Q Consensus 441 ~G~ 443 (851)
-.|
T Consensus 181 ~T~ 183 (245)
T d2ag5a1 181 DTP 183 (245)
T ss_dssp ECH
T ss_pred ech
Confidence 654
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.19 E-value=5.7e-11 Score=122.65 Aligned_cols=168 Identities=15% Similarity=0.109 Sum_probs=116.0
Q ss_pred cCCCEEEEecCcc--HHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 216 YAGRSVLVTGGTG--FMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 216 ~~~k~VlVTGatG--FIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
++||++|||||+| =||..++++|++.| .+|.+..|.++.. +...+. . ....+..++.+|
T Consensus 6 L~gK~alITGas~~~GIG~aiA~~la~~G---a~V~i~~~~~~~~---~~~~~~---------~----~~~~~~~~~~~D 66 (256)
T d1ulua_ 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAG---AEVALSYQAERLR---PEAEKL---------A----EALGGALLFRAD 66 (256)
T ss_dssp CTTCEEEEESCCCSSSHHHHHHHHHHHTT---CEEEEEESSGGGH---HHHHHH---------H----HHTTCCEEEECC
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCC---CEEEEEeCcHHHH---HHHHHh---------h----hccCcccccccc
Confidence 6899999999998 49999999999999 6788877764321 111111 1 112356789999
Q ss_pred CCCCcCCCCHHHHHHHh-------cCccEEEEccccCCc-----------chhHHHHHHHHHHHHHHHHHHHHhc-CCce
Q psy11859 294 ILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-----------EAELKENVAANTRGTQRLLDIALKM-KKLV 354 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-----------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~ 354 (851)
+++++ +++.++ .++|++||+|+.... .+.+...+++|+.|+..+.+++... .+-.
T Consensus 67 ~~~~~------~v~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G 140 (256)
T d1ulua_ 67 VTQDE------ELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGG 140 (256)
T ss_dssp TTCHH------HHHHHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEE
T ss_pred cCCHH------HHHHHHHHHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCC
Confidence 99986 555554 368999999986421 1245678999999999999887542 1124
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~ 429 (851)
++|++||..+... .|. ...|+.||+.-+.+.+..+. +
T Consensus 141 ~Iv~isS~~~~~~----------~~~----------------------------~~~Y~asKaal~~ltr~lA~ela~~g 182 (256)
T d1ulua_ 141 GIVTLTYYASEKV----------VPK----------------------------YNVMAIAKAALEASVRYLAYELGPKG 182 (256)
T ss_dssp EEEEEECGGGTSB----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred EEEEEeehHhcCC----------CCC----------------------------chHHHHHHHHHHHHHHHHHHHhcccC
Confidence 6899988654221 111 13499999999988876543 8
Q ss_pred CCEEEEecccccCCCCC
Q psy11859 430 LPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 430 l~~~ivRp~~V~G~~~~ 446 (851)
+.+..|.||.|..+...
T Consensus 183 IrVN~I~PG~i~t~~~~ 199 (256)
T d1ulua_ 183 VRVNAISAGPVRTVAAR 199 (256)
T ss_dssp CEEEEEEECCC------
T ss_pred CEEeeeccceeeecccc
Confidence 99999999998766443
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.16 E-value=1e-10 Score=120.99 Aligned_cols=172 Identities=17% Similarity=0.148 Sum_probs=121.4
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
-++||+++||||++-||..++++|.+...+-.+|++..|... +++++ -+.|..+.+. .++.++.+|+
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~------~l~~~-----~~~l~~~~~~--~~~~~~~~Dv 69 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSES------MLRQL-----KEELGAQQPD--LKVVLAAADL 69 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHH------HHHHH-----HHHHHHHCTT--SEEEEEECCT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHH------HHHHH-----HHHHHhhcCC--ceEEEEEccC
Confidence 368999999999999999999999863222278999998642 22221 1223333222 3789999999
Q ss_pred CCCcCCCCHHHHHHHhc-----------CccEEEEccccCCc------c----hhHHHHHHHHHHHHHHHHHHHHhcC--
Q psy11859 295 LQANLGIKDSDLLMLQE-----------EVSVVFNGAASLKL------E----AELKENVAANTRGTQRLLDIALKMK-- 351 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~-----------~vd~ViH~AA~~~~------~----~~~~~~~~~Nv~Gt~~ll~~a~~~~-- 351 (851)
++++ ++..+++ .+|+++|.||.... . +.++..+++|+.|+..+.+++...=
T Consensus 70 s~~~------~v~~l~~~~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~ 143 (259)
T d1oaaa_ 70 GTEA------GVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQD 143 (259)
T ss_dssp TSHH------HHHHHHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCC
T ss_pred CCHH------HHHHHHHHHHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 9986 5555431 46799999986431 1 3567889999999999999886531
Q ss_pred ---CceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC
Q psy11859 352 ---KLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT 428 (851)
Q Consensus 352 ---~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~ 428 (851)
.-.++|++||..+.. +.|.. ..|+.||+..+.+.+.++.
T Consensus 144 ~~~~~g~Iv~isS~~~~~----------~~~~~----------------------------~~Y~asKaal~~lt~~la~ 185 (259)
T d1oaaa_ 144 SPGLSKTVVNISSLCALQ----------PYKGW----------------------------GLYCAGKAARDMLYQVLAA 185 (259)
T ss_dssp CTTCEEEEEEECCGGGTS----------CCTTC----------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccccccccccccC----------CCccc----------------------------hHHHHHHHHHHHHHHHHHh
Confidence 135789999965422 11211 3499999999988877653
Q ss_pred ---CCCEEEEecccccCC
Q psy11859 429 ---KLPVVIVRPSIVLPS 443 (851)
Q Consensus 429 ---~l~~~ivRp~~V~G~ 443 (851)
++.+..|-||.|-.+
T Consensus 186 e~~gIrVn~v~PG~i~T~ 203 (259)
T d1oaaa_ 186 EEPSVRVLSYAPGPLDND 203 (259)
T ss_dssp HCTTEEEEEEECCSBSSH
T ss_pred CCCCCEEEEEEcCCCCCH
Confidence 889999999888654
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.13 E-value=2.1e-10 Score=117.80 Aligned_cols=169 Identities=21% Similarity=0.214 Sum_probs=111.3
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
+.|+||||||++=||..++++|++.|.. ..|++..|..... ++ ++++ ...++.++.+|+++
T Consensus 2 ~~KtilITGassGIG~a~a~~la~~G~~-~~Vi~~~R~~~~~------~~---------l~~~---~~~~~~~~~~Dvs~ 62 (250)
T d1yo6a1 2 SPGSVVVTGANRGIGLGLVQQLVKDKNI-RHIIATARDVEKA------TE---------LKSI---KDSRVHVLPLTVTC 62 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTC-CEEEEEESSGGGC------HH---------HHTC---CCTTEEEEECCTTC
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCCC-CEEEEEeCCHHHH------HH---------HHHh---hCCceEEEEEecCC
Confidence 4699999999999999999999998743 3678888875432 11 2211 23479999999998
Q ss_pred CcCCCCHHHHHHHh---------cCccEEEEccccCCc--------chhHHHHHHHHHHHHHHHHHHHHhc----C----
Q psy11859 297 ANLGIKDSDLLMLQ---------EEVSVVFNGAASLKL--------EAELKENVAANTRGTQRLLDIALKM----K---- 351 (851)
Q Consensus 297 ~~lgls~~~~~~~~---------~~vd~ViH~AA~~~~--------~~~~~~~~~~Nv~Gt~~ll~~a~~~----~---- 351 (851)
.+ +++.+. ..+|++||+||.... .+.+++.+++|+.|+..+.+++... +
T Consensus 63 ~~------~v~~~~~~i~~~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~ 136 (250)
T d1yo6a1 63 DK------SLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKES 136 (250)
T ss_dssp HH------HHHHHHHHHHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSC
T ss_pred HH------HHHHHHHHHHHHhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCC
Confidence 76 444332 138999999996432 1346788999999999988876421 0
Q ss_pred ------CceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHH
Q psy11859 352 ------KLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDE 425 (851)
Q Consensus 352 ------~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~ 425 (851)
....++.+|+....-... .. .....| ...|+.||+....+.+.
T Consensus 137 ~~~~~~~~~~~i~~s~~~~~~~~~-~~-~~~~~~-----------------------------~~aY~aSKaal~~l~~~ 185 (250)
T d1yo6a1 137 GDQLSVSRAAVITISSGLGSITDN-TS-GSAQFP-----------------------------VLAYRMSKAAINMFGRT 185 (250)
T ss_dssp SSCCCTTTCEEEEECCGGGCSTTC-CS-TTSSSC-----------------------------BHHHHHHHHHHHHHHHH
T ss_pred CccccceeccccccccccccccCC-cc-cccchh-----------------------------HHHHHHHHHHHHHHHHH
Confidence 113455555532211100 00 000001 12499999999888876
Q ss_pred HhC-----CCCEEEEeccccc
Q psy11859 426 YKT-----KLPVVIVRPSIVL 441 (851)
Q Consensus 426 ~~~-----~l~~~ivRp~~V~ 441 (851)
.+. ++.+..+-||.|-
T Consensus 186 la~el~~~gI~v~~i~PG~v~ 206 (250)
T d1yo6a1 186 LAVDLKDDNVLVVNFCPGWVQ 206 (250)
T ss_dssp HHHHTGGGTCEEEEEECCCC-
T ss_pred HHHHhcccCeEEEEEecCCCC
Confidence 543 8999999999774
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.09 E-value=3.4e-10 Score=119.10 Aligned_cols=215 Identities=16% Similarity=0.183 Sum_probs=134.4
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
-++||++|||||||-||+.++++|++.| .+|++.+|..... .+..++ |..+ ...++.++.+|+
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~G---a~Vii~~r~~~~l--~~~~~~---------l~~~---~g~~~~~~~~D~ 84 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLG---AQCVIASRKMDVL--KATAEQ---------ISSQ---TGNKVHAIQCDV 84 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHH--HHHHHH---------HHHH---HSSCEEEEECCT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEECCHHHH--HHHHHH---------HHHh---cCCceEEEEecc
Confidence 4899999999999999999999999999 7899999865321 111111 1111 234788999999
Q ss_pred CCCcCCCCHHHHHHHh-------cCccEEEEccccCCcc-------hhHHHHHHHHHHHHHHHHHHHH----hcCCceEE
Q psy11859 295 LQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKLE-------AELKENVAANTRGTQRLLDIAL----KMKKLVAF 356 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~~-------~~~~~~~~~Nv~Gt~~ll~~a~----~~~~~~~f 356 (851)
++++ +++.++ .++|+++|+|+..... +.+...+.+|+.+...+...+. ....-..+
T Consensus 85 ~~~~------~v~~~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i 158 (294)
T d1w6ua_ 85 RDPD------MVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAF 158 (294)
T ss_dssp TCHH------HHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred cChH------HHHHHhhhhhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccc
Confidence 9876 444332 3799999999975432 3455678888888777755442 22234566
Q ss_pred EEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCC
Q psy11859 357 IHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLP 431 (851)
Q Consensus 357 V~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~ 431 (851)
+.+|+.++... .|. ...|+.||+.-+.+.+..+. ++.
T Consensus 159 ~~~ss~~~~~~----------~~~----------------------------~~~YsasKaal~~ltk~lA~ela~~gIr 200 (294)
T d1w6ua_ 159 LSITTIYAETG----------SGF----------------------------VVPSASAKAGVEAMSKSLAAEWGKYGMR 200 (294)
T ss_dssp EEECCTHHHHC----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred cccccchhhhc----------ccc----------------------------cchHHHHHHHHHHHHHHHHHHHhHhCeE
Confidence 66666433211 111 12499999999988876643 899
Q ss_pred EEEEecccccCCCC----CCchhHhhhhcCCceE-EEEcccCceeEEEe--ecC--CCCccEEEEeCC
Q psy11859 432 VVIVRPSIVLPSFQ----EPVPGWVDSLNGPVGV-LVASGKGVVRSMIL--NDL--STETQVFNISSN 490 (851)
Q Consensus 432 ~~ivRp~~V~G~~~----~p~p~~i~~~~~~~~~-~~~~g~~v~~~~~~--~~~--~~~~~iyni~~~ 490 (851)
+..|-||.|-.+.. ++.+.+.+.+....|. -++...+++.++.. .++ --.|.+..+++|
T Consensus 201 VN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~pl~R~~~pediA~~v~fL~sd~s~~itG~~i~vDGG 268 (294)
T d1w6ua_ 201 FNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCGRLGTVEELANLAAFLCSDYASWINGAVIKFDGG 268 (294)
T ss_dssp EEEEEECCBCC------CCTTSHHHHHHHTTCTTSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred EEEEccCccccchhhhccCCcHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCchhcCCCCcEEEECCC
Confidence 99999999976542 1223333332222111 01122344443322 222 236778888877
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=6.1e-10 Score=113.26 Aligned_cols=158 Identities=15% Similarity=0.048 Sum_probs=108.9
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
+||+||||||+|-||+.+++.|++.| .+|+++++...... .....+..|..+
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G---~~V~~~~~~~~~~~-------------------------~~~~~~~~~~~~ 52 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARN---WWVASIDVVENEEA-------------------------SASVIVKMTDSF 52 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTT---CEEEEEESSCCTTS-------------------------SEEEECCCCSCH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCccccc-------------------------cccceeecccCc
Confidence 58999999999999999999999998 78888888654321 122233444443
Q ss_pred CcCCCCHHH----HHHHhc--CccEEEEccccCC----c----chhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEeee
Q psy11859 297 ANLGIKDSD----LLMLQE--EVSVVFNGAASLK----L----EAELKENVAANTRGTQRLLDIALKM-KKLVAFIHFST 361 (851)
Q Consensus 297 ~~lgls~~~----~~~~~~--~vd~ViH~AA~~~----~----~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~vST 361 (851)
.+ ..+. ...... ++|++||+||... . .+.++..+++|+.|+.++.+++... ++--++|++||
T Consensus 53 ~~---~~~~~~~~~~~~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS 129 (236)
T d1dhra_ 53 TE---QADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGA 129 (236)
T ss_dssp HH---HHHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred HH---HHHHHHHHHHHHhCCCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEcc
Confidence 32 0001 111222 5899999998432 1 1345677999999999999888652 23367999999
Q ss_pred eeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-------CCCEEE
Q psy11859 362 AFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-------KLPVVI 434 (851)
Q Consensus 362 a~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-------~l~~~i 434 (851)
..+.. +.|.. ..|+.||+.-+.+.+..+. ++.+..
T Consensus 130 ~~~~~----------~~~~~----------------------------~~Y~asKaal~~lt~~la~El~~~~~gI~vn~ 171 (236)
T d1dhra_ 130 KAALD----------GTPGM----------------------------IGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIA 171 (236)
T ss_dssp GGGGS----------CCTTB----------------------------HHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEE
T ss_pred HHHcC----------CccCC----------------------------cccHHHHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence 65432 11211 3499999999999988753 688999
Q ss_pred EecccccCC
Q psy11859 435 VRPSIVLPS 443 (851)
Q Consensus 435 vRp~~V~G~ 443 (851)
|.||.|--|
T Consensus 172 v~PG~v~T~ 180 (236)
T d1dhra_ 172 VLPVTLDTP 180 (236)
T ss_dssp EEESCEECH
T ss_pred EEeccCcCC
Confidence 999988643
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=3.1e-10 Score=119.76 Aligned_cols=174 Identities=16% Similarity=0.081 Sum_probs=117.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCC---HHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLT---PKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~---~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
++||++|||||++=||+.+++.|++.| .+|++.+|...... ..+.+.++. +.+. .+...+..
T Consensus 5 l~gKvalITGas~GIG~aiA~~la~~G---a~Vvi~d~~~~~~~~~~~~~~~~~~~-----~~~~-------~~~~~~~~ 69 (302)
T d1gz6a_ 5 FDGRVVLVTGAGGGLGRAYALAFAERG---ALVVVNDLGGDFKGVGKGSSAADKVV-----EEIR-------RRGGKAVA 69 (302)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEECCCBCTTSCBCCSHHHHHHH-----HHHH-------HTTCEEEE
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEeCCchhhhhhhhHHHHHHHH-----HHHh-------hccccccc
Confidence 689999999999999999999999999 78888887654221 111221111 1111 12334566
Q ss_pred CCCCCcCCCCHHHHHHH---hcCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEe
Q psy11859 293 DILQANLGIKDSDLLML---QEEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM---KKLVAFIHF 359 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~---~~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~v 359 (851)
|+.+.+- .+..+..+ +.++|++||+||.... .+.++..+++|+.|+..+.+++... .+--++|++
T Consensus 70 d~~~~~~--~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~i 147 (302)
T d1gz6a_ 70 NYDSVEA--GEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMT 147 (302)
T ss_dssp ECCCGGG--HHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred ccchHHH--HHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEe
Confidence 7777650 01112222 2379999999997643 2467788999999999999887542 123689999
Q ss_pred eeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEE
Q psy11859 360 STAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVI 434 (851)
Q Consensus 360 STa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~i 434 (851)
||..+.. +.|.. ..|+.||+.-+.+.+..+. ++.+..
T Consensus 148 sS~~~~~----------~~~~~----------------------------~~Y~asKaal~~lt~~la~E~~~~gIrVN~ 189 (302)
T d1gz6a_ 148 ASASGIY----------GNFGQ----------------------------ANYSAAKLGLLGLANTLVIEGRKNNIHCNT 189 (302)
T ss_dssp CCHHHHH----------CCTTC----------------------------HHHHHHHHHHHHHHHHHHHHTGGGTEEEEE
T ss_pred CChhhcC----------CCCCc----------------------------HHHHHHHHHHHHHHHHHHHHHhccCCceee
Confidence 9965421 11111 2499999998888776543 899999
Q ss_pred EecccccCCC
Q psy11859 435 VRPSIVLPSF 444 (851)
Q Consensus 435 vRp~~V~G~~ 444 (851)
|-||.+.-..
T Consensus 190 I~PG~~~t~~ 199 (302)
T d1gz6a_ 190 IAPNAGSRMT 199 (302)
T ss_dssp EEEECCSTTT
T ss_pred eCCCCCCcch
Confidence 9999876544
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.08 E-value=6.3e-10 Score=113.06 Aligned_cols=157 Identities=16% Similarity=0.143 Sum_probs=107.9
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
..+||||||+|-||+.++++|++.| .+|++++|.+.... .....+.+|+.+.
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G---~~V~~~~~~~~~~~-------------------------~~~~~~~~~~~~~ 53 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNG---YTVLNIDLSANDQA-------------------------DSNILVDGNKNWT 53 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTT---EEEEEEESSCCTTS-------------------------SEEEECCTTSCHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCchhcc-------------------------cccceeccccCch
Confidence 4579999999999999999999998 78999999865421 1233456666654
Q ss_pred cCCCCHH---HHHHHh--cCccEEEEccccCCc----c----hhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEeeeee
Q psy11859 298 NLGIKDS---DLLMLQ--EEVSVVFNGAASLKL----E----AELKENVAANTRGTQRLLDIALKM-KKLVAFIHFSTAF 363 (851)
Q Consensus 298 ~lgls~~---~~~~~~--~~vd~ViH~AA~~~~----~----~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~vSTa~ 363 (851)
+- ... ...... .++|++||+||.... . +.++..+++|+.|+..+.+++... ..=.++|++||..
T Consensus 54 ~~--~~~~~~~~~~~~~~g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~ 131 (235)
T d1ooea_ 54 EQ--EQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAA 131 (235)
T ss_dssp HH--HHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred hH--HHHHHHHHHHHhcCCCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHH
Confidence 30 000 111111 358999999985322 1 345567999999999999888653 2225789999864
Q ss_pred eeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-------CCCEEEEe
Q psy11859 364 CHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-------KLPVVIVR 436 (851)
Q Consensus 364 ~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-------~l~~~ivR 436 (851)
+.. +.|.. ..|+.||+..+.+.+.++. ++.+..+.
T Consensus 132 ~~~----------~~~~~----------------------------~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~ 173 (235)
T d1ooea_ 132 AMG----------PTPSM----------------------------IGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIM 173 (235)
T ss_dssp GGS----------CCTTB----------------------------HHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEE
T ss_pred hcC----------Ccccc----------------------------cchHHHHHHHHHHHHHHHHHhccCCCceEEEEEe
Confidence 432 12221 2499999999999988753 55677789
Q ss_pred cccccC
Q psy11859 437 PSIVLP 442 (851)
Q Consensus 437 p~~V~G 442 (851)
|+.+--
T Consensus 174 Pg~~~T 179 (235)
T d1ooea_ 174 PVTLDT 179 (235)
T ss_dssp ESCBCC
T ss_pred cCcCcC
Confidence 988753
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=4.7e-10 Score=116.48 Aligned_cols=166 Identities=14% Similarity=0.170 Sum_probs=115.3
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
-++||+||||||++=||..++++|++.| .+|++..|... +++++.+ .+. ......+..+..|+
T Consensus 11 ~L~GK~alITGassGIG~aiA~~la~~G---~~Vil~~r~~~------~l~~~~~-----~~~---~~~~~~~~~~~~d~ 73 (269)
T d1xu9a_ 11 MLQGKKVIVTGASKGIGREMAYHLAKMG---AHVVVTARSKE------TLQKVVS-----HCL---ELGAASAHYIAGTM 73 (269)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHHH-----HHH---HHTCSEEEEEECCT
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHHHH-----HHh---hhhcccchhhhhhh
Confidence 3899999999999999999999999999 78999999643 2322211 111 11234677889999
Q ss_pred CCCcCCCCHHHHHHH-------hcCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc-C-CceEEEE
Q psy11859 295 LQANLGIKDSDLLML-------QEEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM-K-KLVAFIH 358 (851)
Q Consensus 295 ~~~~lgls~~~~~~~-------~~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~-~~~~fV~ 358 (851)
.+.. ....+ ...+|++++.|+.... .+.+...+++|+.|+..+.+++... . +--++|.
T Consensus 74 ~~~~------~~~~~~~~~~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~ 147 (269)
T d1xu9a_ 74 EDMT------FAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVV 147 (269)
T ss_dssp TCHH------HHHHHHHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred hhHH------HHHHHHHHHHHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceE
Confidence 8765 33222 3368999999986532 1356678999999999988877531 1 1247888
Q ss_pred eeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-------CCC
Q psy11859 359 FSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-------KLP 431 (851)
Q Consensus 359 vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-------~l~ 431 (851)
+||..+.- +.|.. ..|+.||+..+.+.+..+. ++.
T Consensus 148 isS~~~~~----------~~p~~----------------------------~~Y~asKaal~~~~~~La~El~~~~~~I~ 189 (269)
T d1xu9a_ 148 VSSLAGKV----------AYPMV----------------------------AAYSASKFALDGFFSSIRKEYSVSRVNVS 189 (269)
T ss_dssp EEEGGGTS----------CCTTC----------------------------HHHHHHHHHHHHHHHHHHHHHHHHTCCCE
T ss_pred eccchhcC----------CCCCc----------------------------hHHHHHHHHHHHHHHHHHHHhhhcCCCEE
Confidence 88865421 12221 3499999998887765532 577
Q ss_pred EEEEeccccc
Q psy11859 432 VVIVRPSIVL 441 (851)
Q Consensus 432 ~~ivRp~~V~ 441 (851)
+..+.||.|-
T Consensus 190 V~~v~PG~v~ 199 (269)
T d1xu9a_ 190 ITLCVLGLID 199 (269)
T ss_dssp EEEEEECCBC
T ss_pred EEEEecCcCC
Confidence 8889998774
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=1.1e-09 Score=112.22 Aligned_cols=164 Identities=15% Similarity=0.153 Sum_probs=117.4
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++||++|||||++-||+.++++|++.| .+|++++|..... ++-.+++ ..+...+..|+.
T Consensus 3 lkGKvalITGas~GIG~aia~~la~~G---~~V~~~~r~~~~~--~~~~~~l----------------~~~~~~~~~~~~ 61 (248)
T d2o23a1 3 VKGLVAVITGGASGLGLATAERLVGQG---ASAVLLDLPNSGG--EAQAKKL----------------GNNCVFAPADVT 61 (248)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECTTSSH--HHHHHHH----------------CTTEEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCChHHH--HHHHHHh----------------CCCccccccccc
Confidence 689999999999999999999999999 7899999976542 2212111 236777888888
Q ss_pred CCcCCCCHHHHHHH-------hcCccEEEEccccCCc-------------chhHHHHHHHHHHHHHHHHHHHHhcC----
Q psy11859 296 QANLGIKDSDLLML-------QEEVSVVFNGAASLKL-------------EAELKENVAANTRGTQRLLDIALKMK---- 351 (851)
Q Consensus 296 ~~~lgls~~~~~~~-------~~~vd~ViH~AA~~~~-------------~~~~~~~~~~Nv~Gt~~ll~~a~~~~---- 351 (851)
+.. +.+.. ....|.+++.++.... .+.++..+++|+.|+.++.+++...-
T Consensus 62 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~ 135 (248)
T d2o23a1 62 SEK------DVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNE 135 (248)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC
T ss_pred ccc------cccccccccccccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhh
Confidence 764 22222 2357888888764321 13567889999999999999885420
Q ss_pred -----CceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHH
Q psy11859 352 -----KLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY 426 (851)
Q Consensus 352 -----~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~ 426 (851)
+--++|++||.++.. +.|.. ..|+.||+.-+.+.+.+
T Consensus 136 ~~~~~~~G~Ii~isS~~~~~----------~~~~~----------------------------~~Y~asKaal~~lt~~l 177 (248)
T d2o23a1 136 PDQGGQRGVIINTASVAAFE----------GQVGQ----------------------------AAYSASKGGIVGMTLPI 177 (248)
T ss_dssp CCTTSCCEEEEEECCTHHHH----------CCTTC----------------------------HHHHHHHHHHHHHHHHH
T ss_pred hhccCCceEEEEecchhhcc----------CCCCc----------------------------hHHHHHHHHHHHHHHHH
Confidence 124799999976532 11211 24999999999888776
Q ss_pred hC-----CCCEEEEecccccCCC
Q psy11859 427 KT-----KLPVVIVRPSIVLPSF 444 (851)
Q Consensus 427 ~~-----~l~~~ivRp~~V~G~~ 444 (851)
+. ++.+..|-||.|--+.
T Consensus 178 a~e~~~~gIrvN~I~PG~i~T~~ 200 (248)
T d2o23a1 178 ARDLAPIGIRVMTIAPGLFGTPL 200 (248)
T ss_dssp HHHHGGGTEEEEEEEECCBCCC-
T ss_pred HHHhcccCcceeeeccCceecch
Confidence 53 8999999999876543
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=9.4e-10 Score=114.55 Aligned_cols=201 Identities=20% Similarity=0.204 Sum_probs=120.4
Q ss_pred CCCEE-EEecCccHHHHHHHHHHHHh-CCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 217 AGRSV-LVTGGTGFMGKVLLEKLLRS-CPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 217 ~~k~V-lVTGatGFIG~~Lv~~Ll~~-g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
+||+| |||||++=||..++++|++. | ..|++..|.... +++. -+.|+.+ ..++.++.+|+
T Consensus 1 ~g~rVAlVTGas~GIG~a~A~~la~~~g---~~Vi~~~r~~~~------~~~~-----~~~l~~~----~~~~~~~~~Dv 62 (275)
T d1wmaa1 1 SGIHVALVTGGNKGIGLAIVRDLCRLFS---GDVVLTARDVTR------GQAA-----VQQLQAE----GLSPRFHQLDI 62 (275)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSS---SEEEEEESSHHH------HHHH-----HHHHHHT----TCCCEEEECCT
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHHhCC---CEEEEEECCHHH------HHHH-----HHHHHhc----CCcEEEEEEec
Confidence 46777 89999999999999999987 5 789999997532 2211 1122222 24688999999
Q ss_pred CCCcCCCCHHHHHHHh-------cCccEEEEccccCCc-------chhHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEe
Q psy11859 295 LQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKL-------EAELKENVAANTRGTQRLLDIALKM-KKLVAFIHF 359 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~-------~~~~~~~~~~Nv~Gt~~ll~~a~~~-~~~~~fV~v 359 (851)
++.+ +++.++ .++|++||.||.... ++.++..+++|+.|+..+.+++... ..--++|.+
T Consensus 63 s~~~------sv~~~~~~~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivni 136 (275)
T d1wmaa1 63 DDLQ------SIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV 136 (275)
T ss_dssp TCHH------HHHHHHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 9986 544332 369999999997532 2345678999999999999988642 122478999
Q ss_pred eeeeeeC---CCcc-cccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCC-chhhHHHHHHHHHHHH----Hh---
Q psy11859 360 STAFCHP---DQKV-LEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHP-NSYTFTKRLTETLVDE----YK--- 427 (851)
Q Consensus 360 STa~~~~---~~~~-i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-n~Y~~SK~~aE~~v~~----~~--- 427 (851)
||..+.. ...+ ..-............+............ ......++| ..|+.||+....+... ++
T Consensus 137 sS~~~~~~~~~~~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~ 214 (275)
T d1wmaa1 137 SSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKK--GVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQR 214 (275)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHCSSCCHHHHHHHHHHHHHHHHT--TCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccceeccccccchhhhhhhcccccchhhhccccccchhcccc--cccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9964421 1100 0011111111111111110000000001 111112233 4699999987766543 22
Q ss_pred --CCCCEEEEecccccCC
Q psy11859 428 --TKLPVVIVRPSIVLPS 443 (851)
Q Consensus 428 --~~l~~~ivRp~~V~G~ 443 (851)
.++.+..+-||.|--+
T Consensus 215 ~~~~I~vn~v~PG~v~T~ 232 (275)
T d1wmaa1 215 KGDKILLNACCPGWVRTD 232 (275)
T ss_dssp TTSCCEEEEEECCSBCST
T ss_pred CCCCeEEEEEecccccCC
Confidence 1788999999988644
|
| >d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=1.3e-10 Score=81.55 Aligned_cols=37 Identities=35% Similarity=0.612 Sum_probs=30.5
Q ss_pred hcccccCCcccccccCCccCccccChhhHHHHHhhhcCC
Q psy11859 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGE 747 (851)
Q Consensus 709 ~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~ge 747 (851)
+|+++|+++|||+| ++|||+|.+.++|..|+++|+||
T Consensus 2 rH~~~Ht~ekpy~C--~~CgK~F~~~s~L~~H~r~HtGE 38 (38)
T d2cota2 2 RSEWQQRERRRYKC--DECGKSFSHSSDLSKHRRTHTGE 38 (38)
T ss_dssp CCCSCCCCSCSSBC--SSSCCBCSCHHHHHHHHTTTCCS
T ss_pred ccCcccCCCCCEec--CCCCceeeCHHHHHHhCccCCCC
Confidence 57888888888888 77888888888888888888875
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.95 E-value=5.5e-10 Score=114.78 Aligned_cols=157 Identities=15% Similarity=0.117 Sum_probs=110.3
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcC
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANL 299 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~l 299 (851)
++|||||++-||+.++++|++.| .+|.+.+|..... +.++.. ... ++..|+++++
T Consensus 2 TAlVTGas~GiG~aiA~~la~~G---a~V~i~~r~~~~~---~~~~~~---------~~~---------~~~~dv~~~~- 56 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAG---HTVACHDESFKQK---DELEAF---------AET---------YPQLKPMSEQ- 56 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTT---CEEEECCGGGGSH---HHHHHH---------HHH---------CTTSEECCCC-
T ss_pred EEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCHHHH---HHHHhh---------hCc---------EEEeccCCHH-
Confidence 78999999999999999999999 7888888875442 222211 111 2246777765
Q ss_pred CCCHHHHHHHh-------cCccEEEEccccCC----cc----hhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEeee
Q psy11859 300 GIKDSDLLMLQ-------EEVSVVFNGAASLK----LE----AELKENVAANTRGTQRLLDIALKM---KKLVAFIHFST 361 (851)
Q Consensus 300 gls~~~~~~~~-------~~vd~ViH~AA~~~----~~----~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~vST 361 (851)
+.+.++ .++|++||+|+... +. +.++..+++|+.|+..+.+++... .+--++|++||
T Consensus 57 -----~~~~~~~~~~~~~G~iDiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS 131 (252)
T d1zmta1 57 -----EPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITS 131 (252)
T ss_dssp -----SHHHHHHHHHHHHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred -----HHHHHHHHHHHHcCCCCEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeecccc
Confidence 333332 37999999998532 21 457788999999999988877431 12358999999
Q ss_pred eeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEe
Q psy11859 362 AFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVR 436 (851)
Q Consensus 362 a~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivR 436 (851)
..+... .|. ...|+.||+.-+.+.+..+. ++.+..|-
T Consensus 132 ~~~~~~----------~~~----------------------------~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~ 173 (252)
T d1zmta1 132 ATPFGP----------WKE----------------------------LSTYTSARAGACTLANALSKELGEYNIPVFAIG 173 (252)
T ss_dssp STTTSC----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred cccccc----------ccc----------------------------ccccccccccHHHHHHHHHHHhcccCcEEEEEe
Confidence 654321 111 12499999999888876543 89999999
Q ss_pred cccccCCC
Q psy11859 437 PSIVLPSF 444 (851)
Q Consensus 437 p~~V~G~~ 444 (851)
||.|-.+.
T Consensus 174 PG~i~T~~ 181 (252)
T d1zmta1 174 PNYLHSED 181 (252)
T ss_dssp ESSBCCBT
T ss_pred cCCCcCcc
Confidence 99987653
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=5.3e-09 Score=107.52 Aligned_cols=169 Identities=14% Similarity=0.116 Sum_probs=117.0
Q ss_pred hcCCCEEEEecCcc--HHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 215 WYAGRSVLVTGGTG--FMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 215 ~~~~k~VlVTGatG--FIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
+++||+||||||+| =||+.+++.|++.| .+|++..|..+. .+++.++.. ...+...+..
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G---~~V~i~~~~~~~---~~~~~~~~~-------------~~~~~~~~~~ 62 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREG---AELAFTYQNDKL---KGRVEEFAA-------------QLGSDIVLQC 62 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTT---CEEEEEESSTTT---HHHHHHHHH-------------HTTCCCEEEC
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcC---CEEEEEeCCHHH---HHHHHHHHh-------------hcCCcceeec
Confidence 57999999999999 69999999999999 788888887542 333332211 1235567788
Q ss_pred CCCCCcCCCCHHHHHHHh-------cCccEEEEccccCCcc------------hhHHHHHHHHHHHHHHHHHHHHhcC-C
Q psy11859 293 DILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKLE------------AELKENVAANTRGTQRLLDIALKMK-K 352 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~~------------~~~~~~~~~Nv~Gt~~ll~~a~~~~-~ 352 (851)
|+.+.. +..... ...|+++|.|+..... +.+.....+|+.+...+.+++...- +
T Consensus 63 ~~~~~~------~~~~~~~~~~~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (258)
T d1qsga_ 63 DVAEDA------SIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP 136 (258)
T ss_dssp CTTCHH------HHHHHHHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE
T ss_pred ccchHH------HHHHHHHHhhhcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 888764 333322 3579999999875432 1234567888999998888876532 2
Q ss_pred ceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC----
Q psy11859 353 LVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT---- 428 (851)
Q Consensus 353 ~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~---- 428 (851)
-..+|++||..+.. +.|. ...|+.||+.-+.+++..+.
T Consensus 137 ~~~Ii~iss~~~~~----------~~~~----------------------------~~~Y~~sKaal~~ltr~lA~el~~ 178 (258)
T d1qsga_ 137 GSALLTLSYLGAER----------AIPN----------------------------YNVMGLAKASLEANVRYMANAMGP 178 (258)
T ss_dssp EEEEEEEECGGGTS----------BCTT----------------------------TTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcEEEEecchhhcc----------CCCC----------------------------cHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34578888754311 1111 13499999999988877643
Q ss_pred -CCCEEEEecccccCCCCC
Q psy11859 429 -KLPVVIVRPSIVLPSFQE 446 (851)
Q Consensus 429 -~l~~~ivRp~~V~G~~~~ 446 (851)
++.+..|.||.|-.+..+
T Consensus 179 ~gIrVN~I~PG~i~T~~~~ 197 (258)
T d1qsga_ 179 EGVRVNAISAGPIRTLAAS 197 (258)
T ss_dssp TTEEEEEEEECCCCCTTGG
T ss_pred cCceeeccccccccccccc
Confidence 799999999999866543
|
| >d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 24 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=3.6e-10 Score=75.92 Aligned_cols=33 Identities=33% Similarity=0.592 Sum_probs=24.8
Q ss_pred ccCCcccccccCCccCccccChhhHHHHHhhhcCC
Q psy11859 713 FENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGE 747 (851)
Q Consensus 713 ~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~ge 747 (851)
+|+++|||+| ++||++|.+.++|..|+++|+||
T Consensus 1 IHTgekpy~C--~~Cgk~F~~~~~L~~H~r~HtgE 33 (33)
T d1x6ea1 1 IHSGEKPYGC--VECGKAFSRSSILVQHQRVHTGE 33 (33)
T ss_dssp TTTTCCCEEC--SSSCCEESSHHHHHHHHHGGGCS
T ss_pred CcCCCCCeeC--CCCCCEeCchHHhHhhccccCCC
Confidence 5777777777 67777777777777777777765
|
| >d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: PATZ1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=4.8e-10 Score=78.44 Aligned_cols=34 Identities=32% Similarity=0.767 Sum_probs=17.1
Q ss_pred cccccccCCccCccccChhhHHHHHh-hhcCCCcccc
Q psy11859 717 VRTFQCTYPECLKFYAKMSHLKAHLR-RHSGERSFKC 752 (851)
Q Consensus 717 ~r~~~C~~~~Cgk~F~~~~~L~~H~~-~H~gekp~~C 752 (851)
+|||+| ++||++|.+.++|..|++ +|+|+|||+|
T Consensus 3 ~Kpy~C--~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C 37 (39)
T d2epsa1 3 GKPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKC 37 (39)
T ss_dssp SCCEEC--SSSCCEESSHHHHHHHHHHTSCCCCCCCS
T ss_pred CCCccC--CCCCCCcCChHHhhccCcCccCCCcCcCC
Confidence 445555 445555555555555543 4555555555
|
| >d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=2.1e-10 Score=80.42 Aligned_cols=37 Identities=41% Similarity=0.760 Sum_probs=35.2
Q ss_pred HHHhhhcCCCccccCccccCccccCchhHHHhhhhcCCC
Q psy11859 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777 (851)
Q Consensus 739 ~H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~ge 777 (851)
+|+++|+++|||.|+ .|||+|.++++|.+|+++|+||
T Consensus 2 rH~~~Ht~ekpy~C~--~CgK~F~~~s~L~~H~r~HtGE 38 (38)
T d2cota2 2 RSEWQQRERRRYKCD--ECGKSFSHSSDLSKHRRTHTGE 38 (38)
T ss_dssp CCCSCCCCSCSSBCS--SSCCBCSCHHHHHHHHTTTCCS
T ss_pred ccCcccCCCCCEecC--CCCceeeCHHHHHHhCccCCCC
Confidence 478999999999998 9999999999999999999997
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=98.85 E-value=8.5e-09 Score=106.47 Aligned_cols=165 Identities=12% Similarity=0.058 Sum_probs=110.2
Q ss_pred hcCCCEEEEecCccH--HHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 215 WYAGRSVLVTGGTGF--MGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 215 ~~~~k~VlVTGatGF--IG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
.++||+||||||+|. ||..++++|++.| .+|++..|.... ..+++ .++ ...+...+++
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~G---a~Vil~~~~~~~--~~~~~------------~~~---~~~~~~~~~~ 62 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQG---AQLVLTGFDRLR--LIQRI------------TDR---LPAKAPLLEL 62 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTT---CEEEEEECSCHH--HHHHH------------HTT---SSSCCCEEEC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcC---CEEEEEeCChHH--HHHHH------------HHH---cCCceeeEee
Confidence 578999999998775 9999999999999 788888876421 11112 111 2246778899
Q ss_pred CCCCCcCCCCHHHHHHH-------h---cCccEEEEccccCCc---------c---hhHHHHHHHHHHHHHHHHHHHHhc
Q psy11859 293 DILQANLGIKDSDLLML-------Q---EEVSVVFNGAASLKL---------E---AELKENVAANTRGTQRLLDIALKM 350 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~-------~---~~vd~ViH~AA~~~~---------~---~~~~~~~~~Nv~Gt~~ll~~a~~~ 350 (851)
|++++. +...+ + ..+|+++|+|+.... + ..+...+.+|+.+.......+...
T Consensus 63 dv~~~~------~~~~~~~~v~~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (268)
T d2h7ma1 63 DVQNEE------HLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPI 136 (268)
T ss_dssp CTTCHH------HHHHHHHHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred eccccc------ccccccchhhhccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhh
Confidence 999874 33222 2 347999999995421 1 233456778888888777777654
Q ss_pred CCceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC--
Q psy11859 351 KKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT-- 428 (851)
Q Consensus 351 ~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~-- 428 (851)
.+-...+.++|..... ..|. ...|+.||...+.+++..+.
T Consensus 137 ~~~~~~i~~~s~~~~~----------~~p~----------------------------~~~y~~sK~a~~~ltr~lA~e~ 178 (268)
T d2h7ma1 137 MNPGGSIVGMDFDPSR----------AMPA----------------------------YNWMTVAKSALESVNRFVAREA 178 (268)
T ss_dssp EEEEEEEEEEECCCSS----------CCTT----------------------------THHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccc----------cCcc----------------------------cchhhccccchhhccccchhhh
Confidence 4333444444422211 1111 24599999999998876543
Q ss_pred ---CCCEEEEecccccCC
Q psy11859 429 ---KLPVVIVRPSIVLPS 443 (851)
Q Consensus 429 ---~l~~~ivRp~~V~G~ 443 (851)
++.+..|.||.|-.+
T Consensus 179 ~~~gIrVN~V~PG~v~T~ 196 (268)
T d2h7ma1 179 GKYGVRSNLVAAGPIRTL 196 (268)
T ss_dssp HTTTCEEEEEEECCCCCH
T ss_pred hccCCcceEEecCCCCCh
Confidence 899999999988653
|
| >d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: PATZ1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=8.5e-10 Score=77.17 Aligned_cols=37 Identities=30% Similarity=0.646 Sum_probs=29.9
Q ss_pred CCCccccCccccCccccCchhHHHhhh-hcCCCCCccCCC
Q psy11859 746 GERSFKCDWQDCKWQFSRSDELSRHRR-SHFGIKPYPCTL 784 (851)
Q Consensus 746 gekp~~C~~~~C~k~F~~~~~L~~H~r-~H~gekp~~C~~ 784 (851)
-+|||+|. .||++|.++++|.+|++ +|+|+|||+|++
T Consensus 2 ~~Kpy~C~--~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i 39 (39)
T d2epsa1 2 VGKPYICQ--SCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39 (39)
T ss_dssp SSCCEECS--SSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred CCCCccCC--CCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence 46888887 88888888888888865 688888888864
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.82 E-value=1.3e-08 Score=103.14 Aligned_cols=152 Identities=20% Similarity=0.198 Sum_probs=108.8
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+|++|||||++-||+.++++|++.| .+|++.+|.+.+. +...+++|+++.
T Consensus 1 DK~alITGas~GIG~aiA~~la~~G---a~V~i~~~~~~~~---------------------------~~~~~~~d~~~~ 50 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARG---YRVVVLDLRREGE---------------------------DLIYVEGDVTRE 50 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHT---CEEEEEESSCCSS---------------------------SSEEEECCTTCH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCcccc---------------------------cceEeeccccch
Confidence 5899999999999999999999999 7899999876542 456788999876
Q ss_pred cCCCCHHHHHHH------hcCccEEEEccccCCc-----------chhHHHHHHHHHHHHHHHHHHHHhc---------C
Q psy11859 298 NLGIKDSDLLML------QEEVSVVFNGAASLKL-----------EAELKENVAANTRGTQRLLDIALKM---------K 351 (851)
Q Consensus 298 ~lgls~~~~~~~------~~~vd~ViH~AA~~~~-----------~~~~~~~~~~Nv~Gt~~ll~~a~~~---------~ 351 (851)
. ....+ ....+.+++.++.... .+.++..+++|+.+...+...+... .
T Consensus 51 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 124 (241)
T d1uaya_ 51 E------DVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEG 124 (241)
T ss_dssp H------HHHHHHHHHHHHSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTS
T ss_pred h------hhHHHHHhhhccccccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhccc
Confidence 5 22222 2245566665553211 1345677899999998888776542 1
Q ss_pred CceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHhC---
Q psy11859 352 KLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--- 428 (851)
Q Consensus 352 ~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~~--- 428 (851)
+--++|++||..+... .|. ...|+.||+.-+.+.+..+.
T Consensus 125 ~~G~Ii~isS~~~~~~----------~~~----------------------------~~~Y~asKaal~~lt~~lA~ela 166 (241)
T d1uaya_ 125 QRGVIVNTASVAAFEG----------QIG----------------------------QAAYAASKGGVVALTLPAARELA 166 (241)
T ss_dssp CSEEEEEECCTHHHHC----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CceeeeeecchhhccC----------CCC----------------------------chhhHHHHHHHHHHHHHHHHHHh
Confidence 2358999999654211 111 13499999999988876643
Q ss_pred --CCCEEEEecccccCC
Q psy11859 429 --KLPVVIVRPSIVLPS 443 (851)
Q Consensus 429 --~l~~~ivRp~~V~G~ 443 (851)
++.+..|-||.|--+
T Consensus 167 ~~gIrVN~V~PG~i~T~ 183 (241)
T d1uaya_ 167 GWGIRVVTVAPGLFDTP 183 (241)
T ss_dssp GGTEEEEEEEECSCSSH
T ss_pred hcCCceeeecCCccccc
Confidence 899999999998654
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=98.81 E-value=2.3e-08 Score=103.55 Aligned_cols=169 Identities=11% Similarity=0.072 Sum_probs=107.9
Q ss_pred hcCCCEEEEecCcc--HHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEc
Q psy11859 215 WYAGRSVLVTGGTG--FMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEG 292 (851)
Q Consensus 215 ~~~~k~VlVTGatG--FIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~g 292 (851)
+++||++|||||+| -||..++++|++.| .+|++..|++. ..++++++.+ + .....++..
T Consensus 2 ~L~gK~alITGaag~~GIG~AiA~~la~~G---a~V~i~~r~~~---~~~~~~~l~~---------~----~~~~~~~~~ 62 (274)
T d2pd4a1 2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQG---ATLAFTYLNES---LEKRVRPIAQ---------E----LNSPYVYEL 62 (274)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTT---CEEEEEESSTT---THHHHHHHHH---------H----TTCCCEEEC
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHHHHHCC---CEEEEEeCCHH---HHHHHHHHHh---------h----CCceeEeee
Confidence 57999999999988 59999999999999 78999999743 2333433211 1 124557889
Q ss_pred CCCCCcCCCCHHHHHHHh-------cCccEEEEccccCCcc--------hhHHHH---HHHHHHHHHHHHHHHHhcCCce
Q psy11859 293 DILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKLE--------AELKEN---VAANTRGTQRLLDIALKMKKLV 354 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~~--------~~~~~~---~~~Nv~Gt~~ll~~a~~~~~~~ 354 (851)
|+++.. +...++ ..+|+++|+|+..... ..+... ..++..+...++.......+-.
T Consensus 63 d~~~~~------~~~~~~~~~~~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (274)
T d2pd4a1 63 DVSKEE------HFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNG 136 (274)
T ss_dssp CTTCHH------HHHHHHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE
T ss_pred cccchh------hHHHHHHHHHHHcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccC
Confidence 999875 444433 4789999999965331 112222 3333344445555444333334
Q ss_pred EEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHHh----C-C
Q psy11859 355 AFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYK----T-K 429 (851)
Q Consensus 355 ~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~~----~-~ 429 (851)
..|.++|..+... +.+ ....|+.+|..-+.+++..+ . +
T Consensus 137 ~~i~~~s~~~~~~---------~~~----------------------------~~~~y~asK~al~~ltr~lA~e~~~~G 179 (274)
T d2pd4a1 137 ASVLTLSYLGSTK---------YMA----------------------------HYNVMGLAKAALESAVRYLAVDLGKHH 179 (274)
T ss_dssp EEEEEEECGGGTS---------BCT----------------------------TCHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cceeeeccccccc---------ccc----------------------------cchhhhHHHHHHHHHHHhhHHHhcCcC
Confidence 4444444322110 011 12459999999998886654 3 8
Q ss_pred CCEEEEecccccCCCC
Q psy11859 430 LPVVIVRPSIVLPSFQ 445 (851)
Q Consensus 430 l~~~ivRp~~V~G~~~ 445 (851)
+.+..+.||.|.-+..
T Consensus 180 IrvN~I~PG~v~T~~~ 195 (274)
T d2pd4a1 180 IRVNALSAGPIRTLAS 195 (274)
T ss_dssp CEEEEEEECCCCCTTG
T ss_pred ceecccccCcccCccc
Confidence 9999999999876544
|
| >d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: SWI5 zinc-finger domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.80 E-value=6.3e-10 Score=81.60 Aligned_cols=43 Identities=23% Similarity=0.539 Sum_probs=34.2
Q ss_pred hhhhhcccccCCcccccccCCccCccccChhhHHHHHhhhcCCC
Q psy11859 705 MVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGER 748 (851)
Q Consensus 705 ~~l~~h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gek 748 (851)
..+..|+. |+++|||+|.++.|+++|...++|..|+++|+|||
T Consensus 5 ~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek 47 (47)
T d1ncsa_ 5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47 (47)
T ss_dssp SSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred chhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence 45666664 88888888866668888888888888888888875
|
| >d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 24 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=1.2e-09 Score=73.37 Aligned_cols=33 Identities=45% Similarity=0.792 Sum_probs=31.7
Q ss_pred hhcCCCccccCccccCccccCchhHHHhhhhcCCC
Q psy11859 743 RHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777 (851)
Q Consensus 743 ~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~ge 777 (851)
+|+|+|||+|. .||++|.+++.|.+|+++|+||
T Consensus 1 IHTgekpy~C~--~Cgk~F~~~~~L~~H~r~HtgE 33 (33)
T d1x6ea1 1 IHSGEKPYGCV--ECGKAFSRSSILVQHQRVHTGE 33 (33)
T ss_dssp TTTTCCCEECS--SSCCEESSHHHHHHHHHGGGCS
T ss_pred CcCCCCCeeCC--CCCCEeCchHHhHhhccccCCC
Confidence 59999999998 9999999999999999999986
|
| >d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Kruppel-like factor 3, Bklf species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.73 E-value=2.6e-09 Score=74.21 Aligned_cols=35 Identities=29% Similarity=0.608 Sum_probs=25.4
Q ss_pred cccccCCcccccccCCccCccccChhhHHHHHhhhcC
Q psy11859 710 QKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSG 746 (851)
Q Consensus 710 h~~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~g 746 (851)
|.++|+|+|||+| ++|+++|.++++|..|+++|.+
T Consensus 2 h~R~HTgeKPy~C--~~C~k~F~~~~~L~~H~r~H~~ 36 (37)
T d1p7aa_ 2 STRGSTGIKPFQC--PDCDRSFSRSDHLALHRKRHML 36 (37)
T ss_dssp CSSTTCCSSSBCC--TTTCCCBSSHHHHHHHHGGGTC
T ss_pred CCCccCCccCeEe--CCCCCEecCHHHHHHHHhcCcC
Confidence 5677777777777 6677777777777777777753
|
| >d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transcriptional repressor CTCF species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=3.4e-09 Score=73.06 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=23.8
Q ss_pred cccCCcccccccCCccCccccChhhHHHHHhhhcCC
Q psy11859 712 TFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGE 747 (851)
Q Consensus 712 ~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~ge 747 (851)
++|+|+|||+| ++||++|.+.++|..|+++|+++
T Consensus 1 R~HTgekPy~C--~~C~k~F~~~~~L~~H~r~H~~~ 34 (36)
T d1x6ha2 1 RTHTGEKPYAC--SHCDKTFRQKQLLDMHFKRYHDP 34 (36)
T ss_dssp TTCCCCCCEEC--SSSSCEESSHHHHHHHHHHTTCS
T ss_pred CCCCCCCCEEC--CCCCCCcCCHhHHHHhCcccCCC
Confidence 46777777777 66777777777777777777654
|
| >d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 692, ZNF692 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=3.9e-09 Score=72.47 Aligned_cols=34 Identities=38% Similarity=0.828 Sum_probs=25.4
Q ss_pred ccccCCccCccccChhhHHHHHhhhcCCCccccC
Q psy11859 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753 (851)
Q Consensus 720 ~~C~~~~Cgk~F~~~~~L~~H~~~H~gekp~~C~ 753 (851)
|.|.++.||++|.++++|++|+++|+|++||+|+
T Consensus 2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~ 35 (36)
T d2dlka2 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35 (36)
T ss_dssp EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence 6676666777777777777777777777777774
|
| >d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Kruppel-like factor 3, Bklf species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.64 E-value=3.8e-09 Score=73.35 Aligned_cols=35 Identities=43% Similarity=0.815 Sum_probs=32.8
Q ss_pred HHhhhcCCCccccCccccCccccCchhHHHhhhhcCC
Q psy11859 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFG 776 (851)
Q Consensus 740 H~~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~g 776 (851)
|.|+|+|||||+|. .|+++|.++++|.+|+++|.+
T Consensus 2 h~R~HTgeKPy~C~--~C~k~F~~~~~L~~H~r~H~~ 36 (37)
T d1p7aa_ 2 STRGSTGIKPFQCP--DCDRSFSRSDHLALHRKRHML 36 (37)
T ss_dssp CSSTTCCSSSBCCT--TTCCCBSSHHHHHHHHGGGTC
T ss_pred CCCccCCccCeEeC--CCCCEecCHHHHHHHHhcCcC
Confidence 67899999999998 899999999999999999975
|
| >d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transcriptional repressor CTCF species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=6e-09 Score=71.81 Aligned_cols=34 Identities=26% Similarity=0.596 Sum_probs=32.2
Q ss_pred hhhcCCCccccCccccCccccCchhHHHhhhhcCCC
Q psy11859 742 RRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777 (851)
Q Consensus 742 ~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~ge 777 (851)
|+|+|||||+|. .||++|.+++.|.+|+++|+++
T Consensus 1 R~HTgekPy~C~--~C~k~F~~~~~L~~H~r~H~~~ 34 (36)
T d1x6ha2 1 RTHTGEKPYACS--HCDKTFRQKQLLDMHFKRYHDP 34 (36)
T ss_dssp TTCCCCCCEECS--SSSCEESSHHHHHHHHHHTTCS
T ss_pred CCCCCCCCEECC--CCCCCcCCHhHHHHhCcccCCC
Confidence 589999999998 9999999999999999999876
|
| >d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transcription factor sp1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=9.7e-09 Score=67.88 Aligned_cols=31 Identities=39% Similarity=0.809 Sum_probs=23.0
Q ss_pred ccccccCCccCccccChhhHHHHHhhhcCCC
Q psy11859 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGER 748 (851)
Q Consensus 718 r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gek 748 (851)
|||.|.++.||++|.+.++|+.|+++|+|||
T Consensus 1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK 31 (31)
T d1sp2a_ 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31 (31)
T ss_dssp CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence 5777776777777777777777777777764
|
| >d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein ZFPM1 (FOG-1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.59 E-value=1.1e-08 Score=69.46 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=21.4
Q ss_pred cCCcccccccCCccCccccChhhHHHHHhhhcCC
Q psy11859 714 ENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGE 747 (851)
Q Consensus 714 h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~ge 747 (851)
|+|+|||+| +.|++.|.++++|..|+++|+++
T Consensus 2 ~TGekPy~C--~~C~k~F~~~~~L~~H~r~Ht~~ 33 (35)
T d1srka_ 2 SSGKRPFVC--RICLSAFTTKANCARHLKVHTDT 33 (35)
T ss_dssp CSCCSCEEC--SSSCCEESSHHHHHHHHGGGTSC
T ss_pred CCCCccccC--CCCCCcccChHHHHHHccccCCc
Confidence 566666666 56666666666666666666654
|
| >d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: ADR1 species: Synthetic, based on Saccharomyces cerevisiae sequence
Probab=98.56 E-value=1.4e-08 Score=66.02 Aligned_cols=29 Identities=41% Similarity=0.897 Sum_probs=17.7
Q ss_pred ccccccCCccCccccChhhHHHHHhhhcCCC
Q psy11859 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGER 748 (851)
Q Consensus 718 r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gek 748 (851)
|||+| ++||++|.+.++|..|+++|+|||
T Consensus 1 kp~~C--~~C~k~F~~~~~L~~H~r~HTgEK 29 (29)
T d2adra1 1 RSFVC--EVCTRAFARQEHLKRHYRSHTNEK 29 (29)
T ss_dssp CCBCC--TTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred CcCCC--CCCCCCCCCchHcccccCcccCCC
Confidence 45666 556666666666666666666654
|
| >d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 692, ZNF692 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=1.1e-08 Score=70.18 Aligned_cols=35 Identities=26% Similarity=0.559 Sum_probs=31.9
Q ss_pred cccCccccCccccCchhHHHhhhhcCCCCCccCCC
Q psy11859 750 FKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTL 784 (851)
Q Consensus 750 ~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~C~~ 784 (851)
|.|++..|+++|.++..|++|+++|+|+|||+|+.
T Consensus 2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~f 36 (36)
T d2dlka2 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36 (36)
T ss_dssp EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred eECCCCCCCCeeCChhHhccccCeeCCCCCEeCCC
Confidence 78875569999999999999999999999999973
|
| >d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein ZFPM1 (FOG-1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.53 E-value=1.7e-08 Score=68.59 Aligned_cols=32 Identities=31% Similarity=0.580 Sum_probs=30.5
Q ss_pred hcCCCccccCccccCccccCchhHHHhhhhcCCC
Q psy11859 744 HSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777 (851)
Q Consensus 744 H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~ge 777 (851)
|+|||||+|. .|++.|.++++|++|+++|+++
T Consensus 2 ~TGekPy~C~--~C~k~F~~~~~L~~H~r~Ht~~ 33 (35)
T d1srka_ 2 SSGKRPFVCR--ICLSAFTTKANCARHLKVHTDT 33 (35)
T ss_dssp CSCCSCEECS--SSCCEESSHHHHHHHHGGGTSC
T ss_pred CCCCccccCC--CCCCcccChHHHHHHccccCCc
Confidence 7999999998 8999999999999999999975
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=98.52 E-value=4.1e-07 Score=94.22 Aligned_cols=161 Identities=18% Similarity=0.154 Sum_probs=102.8
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC------
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD------ 293 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD------ 293 (851)
.+|||||++=||+.+++.|++.| .+|++..|.... ..+.+.+ .|.... ......+.+|
T Consensus 4 VAlITGas~GIG~aiA~~la~~G---a~V~i~~~~~~~--~~~~~~~--------~l~~~~---~~~~~~~~~d~~~~~~ 67 (284)
T d1e7wa_ 4 VALVTGAAKRLGRSIAEGLHAEG---YAVCLHYHRSAA--EANALSA--------TLNARR---PNSAITVQADLSNVAT 67 (284)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHHH--------HHHHHS---TTCEEEEECCCSSSCB
T ss_pred EEEEeCCCCHHHHHHHHHHHHcC---CEEEEEeCCCHH--HHHHHHH--------HHHhhc---CCceEEEEeecccccc
Confidence 57999999999999999999999 788887775422 1122211 111111 1234444444
Q ss_pred -----------CCCCcCCCCHHHHHHHh-------cCccEEEEccccCCcc-------h--------------hHHHHHH
Q psy11859 294 -----------ILQANLGIKDSDLLMLQ-------EEVSVVFNGAASLKLE-------A--------------ELKENVA 334 (851)
Q Consensus 294 -----------i~~~~lgls~~~~~~~~-------~~vd~ViH~AA~~~~~-------~--------------~~~~~~~ 334 (851)
+++.+ +.+.++ .++|++||+||..... + .+...+.
T Consensus 68 ~~~~~~~~~~dv~~~~------~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (284)
T d1e7wa_ 68 APVSGADGSAPVTLFT------RCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFG 141 (284)
T ss_dssp CCCC----CCCBCHHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHH
T ss_pred cccccccccccCCCHH------HHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHh
Confidence 55443 444443 4799999999975321 0 1223578
Q ss_pred HHHHHHHHHHHHHHhc---------CCceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCccc
Q psy11859 335 ANTRGTQRLLDIALKM---------KKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKIL 405 (851)
Q Consensus 335 ~Nv~Gt~~ll~~a~~~---------~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (851)
+|+.|+..+.+++... +.--++|.+|++.... +.|.
T Consensus 142 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~s~~~~~----------~~~~------------------------- 186 (284)
T d1e7wa_ 142 SNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQ----------PLLG------------------------- 186 (284)
T ss_dssp HHTHHHHHHHHHHHHHHHTSCGGGSCSCEEEEEECCTTTTS----------CCTT-------------------------
T ss_pred hheeeeeeeeccccchhhhhHHHhcCCCCcccccccccccC----------Cccc-------------------------
Confidence 9999999988876542 1234667777743321 1111
Q ss_pred CCCCchhhHHHHHHHHHHHHHhC-----CCCEEEEecccc
Q psy11859 406 GPHPNSYTFTKRLTETLVDEYKT-----KLPVVIVRPSIV 440 (851)
Q Consensus 406 ~~~~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivRp~~V 440 (851)
...|+.||+.-+.+.+..+. ++.+..|-||.+
T Consensus 187 ---~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t 223 (284)
T d1e7wa_ 187 ---YTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLS 223 (284)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSB
T ss_pred ---eeeeccccccchhhhHHHHHHhCCccccccccccccc
Confidence 12499999999988876643 899999999964
|
| >d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transcription factor sp1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=2.6e-08 Score=64.61 Aligned_cols=29 Identities=34% Similarity=0.910 Sum_probs=17.2
Q ss_pred ccccccCCccCccccChhhHHHHHhhhcCCC
Q psy11859 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGER 748 (851)
Q Consensus 718 r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gek 748 (851)
|||.| ++||++|.++++|..|+++|+|||
T Consensus 1 Kpy~C--~~C~k~F~~~s~L~~H~r~HtgeK 29 (29)
T d1sp1a_ 1 KKFAC--PECPKRFMRSDHLSKHIKTHQNKK 29 (29)
T ss_dssp CCSCC--TTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred CCEEC--CcCCCeecchHHhhhhcCccCCcC
Confidence 45666 556666666666666666666553
|
| >d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Five-finger GLI1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=2.8e-08 Score=64.92 Aligned_cols=30 Identities=43% Similarity=0.971 Sum_probs=22.1
Q ss_pred ccccccCCccCccccChhhHHHHHhhhcCC
Q psy11859 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGE 747 (851)
Q Consensus 718 r~~~C~~~~Cgk~F~~~~~L~~H~~~H~ge 747 (851)
|||+|.++.||++|.+.++|+.|+++|+||
T Consensus 1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE 30 (30)
T d2glia3 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30 (30)
T ss_dssp CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence 577776666777777777777777777775
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.50 E-value=8e-07 Score=94.29 Aligned_cols=192 Identities=9% Similarity=0.045 Sum_probs=112.5
Q ss_pred CCCEEEEecCc--cHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 217 AGRSVLVTGGT--GFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 217 ~~k~VlVTGat--GFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
.+|..|||||+ .=||..+++.|++.| .+|++..++.... ...........-...................|+
T Consensus 1 n~kVAlITGaa~s~GIG~aiA~~la~~G---A~V~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (329)
T d1uh5a_ 1 NEDICFIAGIGDTNGYGWGIAKELSKRN---VKIIFGIWPPVYN---IFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDA 74 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTT---CEEEEEECGGGHH---HHHHHHHTTTTTGGGEETTTEECCEEEEEECCT
T ss_pred CCcEEEEeCCCCCChHHHHHHHHHHHcC---CEEEEEeCchhhh---hhhHHHHHHhhhhHHHHHHHhhhhhhhcccccc
Confidence 36899999954 579999999999999 7888877765321 111111111100111111111112233344443
Q ss_pred --------------------CCCcCCCCHHHH----HHHhcCccEEEEccccCC-----cc----hhHHHHHHHHHHHHH
Q psy11859 295 --------------------LQANLGIKDSDL----LMLQEEVSVVFNGAASLK-----LE----AELKENVAANTRGTQ 341 (851)
Q Consensus 295 --------------------~~~~lgls~~~~----~~~~~~vd~ViH~AA~~~-----~~----~~~~~~~~~Nv~Gt~ 341 (851)
.+.+ +.+.+ .....++|++||.||... +. +.+...+++|+.|+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~ 151 (329)
T d1uh5a_ 75 SFDTANDIDEETKNNKRYNMLQNY---TIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLI 151 (329)
T ss_dssp TCSSGGGCCHHHHTSHHHHTCCCC---SHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred eehhhcccchhhhhhhhhhhhhHH---HHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHH
Confidence 2332 01111 122347999999998543 21 457788999999999
Q ss_pred HHHHHHHhc-CCceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHH
Q psy11859 342 RLLDIALKM-KKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTE 420 (851)
Q Consensus 342 ~ll~~a~~~-~~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE 420 (851)
.+.+.+... ..-.++|.+||..+... .|. +...|+.||+.-|
T Consensus 152 ~~~k~~~~~m~~~GsIv~iss~~~~~~--------~p~-----------------------------y~~~y~asKaal~ 194 (329)
T d1uh5a_ 152 SLCKYFVNIMKPQSSIISLTYHASQKV--------VPG-----------------------------YGGGMSSAKAALE 194 (329)
T ss_dssp HHHHHHGGGEEEEEEEEEEECGGGTSC--------CTT-----------------------------CTTTHHHHHHHHH
T ss_pred HHHHHHHhhcccccccccceeehhccc--------ccc-----------------------------cchhhhhhhcccc
Confidence 998888653 22356788877433211 011 1234999999999
Q ss_pred HHHHHHh-----C-CCCEEEEecccccCCCCCCchhHhhh
Q psy11859 421 TLVDEYK-----T-KLPVVIVRPSIVLPSFQEPVPGWVDS 454 (851)
Q Consensus 421 ~~v~~~~-----~-~l~~~ivRp~~V~G~~~~p~p~~i~~ 454 (851)
.+++..+ + ++.+-.|.||.|-=+....+||+.+.
T Consensus 195 ~ltr~lA~Ela~~~gIRVNaI~PG~i~T~a~~~i~g~~~~ 234 (329)
T d1uh5a_ 195 SDTRVLAYHLGRNYNIRINTISAGPLKSRAATAINKLNNT 234 (329)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECCCCCTTGGGCC-----
T ss_pred ccchhhHHHHhcccCcEEEEEecCcccchhhhcccchhhh
Confidence 8886543 2 89999999998865555567776654
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=98.49 E-value=5.1e-08 Score=95.28 Aligned_cols=85 Identities=15% Similarity=0.148 Sum_probs=65.1
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
.-++||+|+||||+|.||+.+++.|++.| .+|++..|.... +.++. +.+... .++..+.+|
T Consensus 19 ~~l~gK~vlItGasgGIG~~ia~~la~~G---~~V~~~~r~~~~------~~~~~-----~~~~~~-----~~~~~~~~d 79 (191)
T d1luaa1 19 GSVKGKKAVVLAGTGPVGMRSAALLAGEG---AEVVLCGRKLDK------AQAAA-----DSVNKR-----FKVNVTAAE 79 (191)
T ss_dssp SCCTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSHHH------HHHHH-----HHHHHH-----HTCCCEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhhc---cchhhcccchHH------HHHHH-----HHHHhc-----cchhhhhhh
Confidence 34799999999999999999999999998 789999997532 22211 111111 145568899
Q ss_pred CCCCcCCCCHHHHHHHhcCccEEEEccccC
Q psy11859 294 ILQANLGIKDSDLLMLQEEVSVVFNGAASL 323 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~~vd~ViH~AA~~ 323 (851)
++++. ++..++.++|+|||+|+..
T Consensus 80 ~~~~~------~~~~~~~~iDilin~Ag~g 103 (191)
T d1luaa1 80 TADDA------SRAEAVKGAHFVFTAGAIG 103 (191)
T ss_dssp CCSHH------HHHHHTTTCSEEEECCCTT
T ss_pred cccHH------HHHHHhcCcCeeeecCccc
Confidence 99876 8888999999999999853
|
| >d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Ying-yang 1 (yy1, zinc finger domain) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=2.4e-08 Score=65.36 Aligned_cols=30 Identities=37% Similarity=0.790 Sum_probs=24.1
Q ss_pred ccccccCCccCccccChhhHHHHHhhhcCC
Q psy11859 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGE 747 (851)
Q Consensus 718 r~~~C~~~~Cgk~F~~~~~L~~H~~~H~ge 747 (851)
|||.|.++.||++|.+.++|+.|+++|+||
T Consensus 1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE 30 (30)
T d1ubdc3 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30 (30)
T ss_dssp CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred CCccCCCCCCCceECcHHHcCccccccCCC
Confidence 678887777888888888888888888875
|
| >d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: ADR1 species: Synthetic, based on Saccharomyces cerevisiae sequence
Probab=98.48 E-value=2.7e-08 Score=64.66 Aligned_cols=29 Identities=48% Similarity=0.850 Sum_probs=27.8
Q ss_pred CccccCccccCccccCchhHHHhhhhcCCCC
Q psy11859 748 RSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778 (851)
Q Consensus 748 kp~~C~~~~C~k~F~~~~~L~~H~r~H~gek 778 (851)
|||.|+ .|+++|++++.|.+|+++|+|||
T Consensus 1 kp~~C~--~C~k~F~~~~~L~~H~r~HTgEK 29 (29)
T d2adra1 1 RSFVCE--VCTRAFARQEHLKRHYRSHTNEK 29 (29)
T ss_dssp CCBCCT--TTCCCBSCHHHHHHHHHTTTSSC
T ss_pred CcCCCC--CCCCCCCCchHcccccCcccCCC
Confidence 699998 99999999999999999999986
|
| >d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: ZIF268 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.48 E-value=2.3e-08 Score=64.20 Aligned_cols=28 Identities=36% Similarity=0.939 Sum_probs=18.5
Q ss_pred cccccccCCccCccccChhhHHHHHhhhcC
Q psy11859 717 VRTFQCTYPECLKFYAKMSHLKAHLRRHSG 746 (851)
Q Consensus 717 ~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~g 746 (851)
||||+| ++|+++|.++++|..|+++|+|
T Consensus 1 EKPy~C--~~C~k~F~~~~~L~~H~r~HTG 28 (28)
T d1a1ia2 1 QKPFQC--RICMRNFSRSDHLTTHIRTHTG 28 (28)
T ss_dssp CCCEEC--TTTCCEESCHHHHHHHHHHHHC
T ss_pred CcCccC--CCCcCEecccccccccCCCccC
Confidence 466666 5666666666666666666664
|
| >d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transcriptional repressor CTCF species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=3.4e-08 Score=67.85 Aligned_cols=30 Identities=13% Similarity=0.370 Sum_probs=21.1
Q ss_pred cccCCcccccccCCccCccccChhhHHHHHhh
Q psy11859 712 TFENLVRTFQCTYPECLKFYAKMSHLKAHLRR 743 (851)
Q Consensus 712 ~~h~~~r~~~C~~~~Cgk~F~~~~~L~~H~~~ 743 (851)
++|+|+|||+| +.|+++|.++++|+.|++.
T Consensus 1 R~HTgekP~~C--~~C~k~F~~~~~L~~H~~~ 30 (36)
T d2ct1a2 1 RTHSGEKPYEC--YICHARFTQSGTMKMHILQ 30 (36)
T ss_dssp CCCSCCCSEEC--TTTCCEESCHHHHHHHHHH
T ss_pred CccCCCCCEeC--CCCcccccchHHHHHHccc
Confidence 46777777777 6677777777777777643
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=98.45 E-value=6.9e-07 Score=93.17 Aligned_cols=233 Identities=9% Similarity=0.018 Sum_probs=124.4
Q ss_pred cCCCEEEEecCcc--HHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcc-cCCCeEEEEc
Q psy11859 216 YAGRSVLVTGGTG--FMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPA-QLSRLHIIEG 292 (851)
Q Consensus 216 ~~~k~VlVTGatG--FIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~-~~~~v~~v~g 292 (851)
++||++|||||+| =||..+++.|++.| .+|++..|............. .......+..+... ...++..+..
T Consensus 6 L~gK~alVTGass~~GIG~aiA~~la~~G---a~Vvi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (297)
T d1d7oa_ 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAG---AEILVGTWVPALNIFETSLRR--GKFDQSRVLPDGSLMEIKKVYPLDA 80 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHTT---CEEEEEEEHHHHHHHHHHHHT--TTTTGGGBCTTSSBCCEEEEEEECT
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCC---CEEEEEeCchhhhhhHHHHHH--hhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 6899999999988 69999999999999 788888875421100111100 00000000000000 1113444444
Q ss_pred CCCCCcCC------------C---CHHHH-HH---HhcCccEEEEccccCC-----cc----hhHHHHHHHHHHHHHHHH
Q psy11859 293 DILQANLG------------I---KDSDL-LM---LQEEVSVVFNGAASLK-----LE----AELKENVAANTRGTQRLL 344 (851)
Q Consensus 293 Di~~~~lg------------l---s~~~~-~~---~~~~vd~ViH~AA~~~-----~~----~~~~~~~~~Nv~Gt~~ll 344 (851)
++.++..- . +...+ +. -+.++|++||+||... +. +.+...+++|+.|+..+.
T Consensus 81 ~~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~ 160 (297)
T d1d7oa_ 81 VFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLL 160 (297)
T ss_dssp TCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHH
T ss_pred hccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhh
Confidence 44322100 0 00111 11 2347999999998632 21 346788999999999999
Q ss_pred HHHHhcCCc-eEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHH
Q psy11859 345 DIALKMKKL-VAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLV 423 (851)
Q Consensus 345 ~~a~~~~~~-~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v 423 (851)
+++...... ...+.+|+...... ... .+..|+.+|+..+.+.
T Consensus 161 ~~~~~~~~~~g~~~~~~~~~~~~~--------~~~-----------------------------~~~~y~~aKaa~~~l~ 203 (297)
T d1d7oa_ 161 SHFLPIMNPGGASISLTYIASERI--------IPG-----------------------------YGGGMSSAKAALESDT 203 (297)
T ss_dssp HHHGGGEEEEEEEEEEECGGGTSC--------CTT-----------------------------CTTTHHHHHHHHHHHH
T ss_pred hHHHHHhhcCCcceeeeehhhccc--------ccc-----------------------------cccceecccccccccc
Confidence 988654211 12344444221110 001 1245999999888776
Q ss_pred HHH----h-C-CCCEEEEecccccCCCCCC---chhHhhhhcCCceE-EEEcccCceeEEEe--ecC--CCCccEEEEeC
Q psy11859 424 DEY----K-T-KLPVVIVRPSIVLPSFQEP---VPGWVDSLNGPVGV-LVASGKGVVRSMIL--NDL--STETQVFNISS 489 (851)
Q Consensus 424 ~~~----~-~-~l~~~ivRp~~V~G~~~~p---~p~~i~~~~~~~~~-~~~~g~~v~~~~~~--~~~--~~~~~iyni~~ 489 (851)
... . + ++.+..|.||.|-.+.... .+.+.+......|+ -++..++++..+.. .++ --.|++..+++
T Consensus 204 ~~~a~e~~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~PlgR~~~peevA~~v~fL~S~~a~~itGq~i~vDG 283 (297)
T d1d7oa_ 204 RVLAFEAGRKQNIRVNTISAGPLGSRAAKAIGFIDTMIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASAITGATIYVDN 283 (297)
T ss_dssp HHHHHHHHHHHCCEEEEEEECCCBCCCSSCCSHHHHHHHHHHHHSSSCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred cccchhccccceEEecccccccccchhhhhccCCHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCchhcCCcCceEEECc
Confidence 543 2 2 8999999999998765543 22333332221111 01223344443222 222 23677777777
Q ss_pred C
Q psy11859 490 N 490 (851)
Q Consensus 490 ~ 490 (851)
|
T Consensus 284 G 284 (297)
T d1d7oa_ 284 G 284 (297)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transcription factor sp1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=3.9e-08 Score=63.79 Aligned_cols=29 Identities=41% Similarity=0.816 Sum_probs=27.7
Q ss_pred CccccCccccCccccCchhHHHhhhhcCCCC
Q psy11859 748 RSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778 (851)
Q Consensus 748 kp~~C~~~~C~k~F~~~~~L~~H~r~H~gek 778 (851)
|||.|. .|+++|.++++|.+|+++|+|||
T Consensus 1 Kpy~C~--~C~k~F~~~s~L~~H~r~HtgeK 29 (29)
T d1sp1a_ 1 KKFACP--ECPKRFMRSDHLSKHIKTHQNKK 29 (29)
T ss_dssp CCSCCT--TTTCCCSCSHHHHHHHHGGGCCC
T ss_pred CCEECC--cCCCeecchHHhhhhcCccCCcC
Confidence 699998 99999999999999999999986
|
| >d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transcription factor sp1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=5.8e-08 Score=64.06 Aligned_cols=31 Identities=55% Similarity=1.081 Sum_probs=28.8
Q ss_pred CccccCccccCccccCchhHHHhhhhcCCCC
Q psy11859 748 RSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778 (851)
Q Consensus 748 kp~~C~~~~C~k~F~~~~~L~~H~r~H~gek 778 (851)
|||.|++..|+++|+++++|.+|+++|+|||
T Consensus 1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK 31 (31)
T d1sp2a_ 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31 (31)
T ss_dssp CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence 6999976689999999999999999999986
|
| >d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: ZIF268 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.41 E-value=2.9e-08 Score=63.72 Aligned_cols=28 Identities=46% Similarity=0.911 Sum_probs=26.9
Q ss_pred CCccccCccccCccccCchhHHHhhhhcCC
Q psy11859 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFG 776 (851)
Q Consensus 747 ekp~~C~~~~C~k~F~~~~~L~~H~r~H~g 776 (851)
||||+|. .|+++|.++++|.+|+++|+|
T Consensus 1 EKPy~C~--~C~k~F~~~~~L~~H~r~HTG 28 (28)
T d1a1ia2 1 QKPFQCR--ICMRNFSRSDHLTTHIRTHTG 28 (28)
T ss_dssp CCCEECT--TTCCEESCHHHHHHHHHHHHC
T ss_pred CcCccCC--CCcCEecccccccccCCCccC
Confidence 7999998 999999999999999999987
|
| >d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transcriptional repressor CTCF species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=4.5e-08 Score=67.24 Aligned_cols=33 Identities=30% Similarity=0.623 Sum_probs=29.0
Q ss_pred hhhcCCCccccCccccCccccCchhHHHhhhhcCC
Q psy11859 742 RRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFG 776 (851)
Q Consensus 742 ~~H~gekp~~C~~~~C~k~F~~~~~L~~H~r~H~g 776 (851)
++|+|||||+|+ .|+++|+++++|++|++.+++
T Consensus 1 R~HTgekP~~C~--~C~k~F~~~~~L~~H~~~~H~ 33 (36)
T d2ct1a2 1 RTHSGEKPYECY--ICHARFTQSGTMKMHILQKHT 33 (36)
T ss_dssp CCCSCCCSEECT--TTCCEESCHHHHHHHHHHHSS
T ss_pred CccCCCCCEeCC--CCcccccchHHHHHHcccccC
Confidence 579999999998 899999999999999765443
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=98.37 E-value=1.2e-06 Score=89.10 Aligned_cols=176 Identities=13% Similarity=0.094 Sum_probs=100.3
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|.||||||+|-||+.++++|++.| .+|++++|.... ...|+.+..
T Consensus 2 kVvlITGas~GIG~aiA~~la~~G---a~V~~~~~~~~~--------------------------------~~~d~~~~~ 46 (257)
T d1fjha_ 2 SIIVISGCATGIGAATRKVLEAAG---HQIVGIDIRDAE--------------------------------VIADLSTAE 46 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSSSS--------------------------------EECCTTSHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECChHH--------------------------------HHHHhcCHH
Confidence 689999999999999999999999 789999886532 123444432
Q ss_pred CCCCHHHHHHH----hcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEeeeeeeeCCCccc
Q psy11859 299 LGIKDSDLLML----QEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKM---KKLVAFIHFSTAFCHPDQKVL 371 (851)
Q Consensus 299 lgls~~~~~~~----~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~---~~~~~fV~vSTa~~~~~~~~i 371 (851)
- . ....... ...+|+++++|+.....+.+.....+|..|+..+.+..... ........+++........
T Consensus 47 ~-~-~~~~~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 122 (257)
T d1fjha_ 47 G-R-KQAIADVLAKCSKGMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAF-- 122 (257)
T ss_dssp H-H-HHHHHHHHTTCTTCCSEEEECCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCG--
T ss_pred H-H-HHHHHHHHHHhCCCCcEEEEcCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhh--
Confidence 0 0 0001111 13589999999987766777778889998888877665431 1234444454432111000
Q ss_pred ccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCC--CchhhHHHHHHHHHHHHHhC-----CCCEEEEecccccCC
Q psy11859 372 EEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPH--PNSYTFTKRLTETLVDEYKT-----KLPVVIVRPSIVLPS 443 (851)
Q Consensus 372 ~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~n~Y~~SK~~aE~~v~~~~~-----~l~~~ivRp~~V~G~ 443 (851)
. ..+... ....-..-.+..+. ...+.. .-.|+.||+.-+.+.+..+. ++.+..|-||.|-.+
T Consensus 123 -~---~~~~~~-----~~~~g~~~~i~s~~-~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~ 191 (257)
T d1fjha_ 123 -D---KNPLAL-----ALEAGEEAKARAIV-EHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETP 191 (257)
T ss_dssp -G---GCTTHH-----HHHHTCHHHHHHHH-HTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC----
T ss_pred -h---hhhhhh-----hccCCcEEEEeeeh-hccCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCCh
Confidence 0 000000 00000000000000 000011 12499999999998877643 899999999998654
|
| >d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: SWI5 zinc-finger domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.36 E-value=4.1e-08 Score=71.73 Aligned_cols=44 Identities=11% Similarity=-0.066 Sum_probs=40.1
Q ss_pred CCCCCCCCCceeeeeccceeecC--CccccchhhhhhhcccccCCcc
Q psy11859 674 YPNGQIRSNRFWHYFFVIFTQIL--PAYLVDFIMVLIRQKTFENLVR 718 (851)
Q Consensus 674 ~~~~~l~~h~~~h~~~~~~~c~~--c~~~~~~~~~l~~h~~~h~~~r 718 (851)
.|.+.+..|+. |++++||.|.. |+++|..+..|..|+++|+|+|
T Consensus 2 ~p~~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek 47 (47)
T d1ncsa_ 2 LPRGSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47 (47)
T ss_dssp CCCSSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred CCcchhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence 36778888885 99999999987 9999999999999999999986
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.35 E-value=4.4e-06 Score=85.26 Aligned_cols=214 Identities=17% Similarity=0.188 Sum_probs=122.5
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcC
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANL 299 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~l 299 (851)
+.|||||++=||+.++++|++.| .+|++..|..... .+.+.+ .+.. ....++..+..|+.+..-
T Consensus 3 vAlVTGas~GIG~aia~~la~~G---~~Vvi~~r~~~~~--~~~~~~--------~~~~---~~~~~~~~~~~~~~~~~~ 66 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQG---FRVVVHYRHSEGA--AQRLVA--------ELNA---ARAGSAVLCKGDLSLSSS 66 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHHH--HHHHHH--------HHHH---HSTTCEEEEECCCSSSTT
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCchHH--HHHHHH--------HHHh---hcCCceEEEecccccchh
Confidence 57999999999999999999999 7899999875421 122211 1111 123467777777765431
Q ss_pred CCCHHHHHHH-------hcCccEEEEccccCCcc------------------hhHHHHHHHHHHHHHHHHHHHHhcC---
Q psy11859 300 GIKDSDLLML-------QEEVSVVFNGAASLKLE------------------AELKENVAANTRGTQRLLDIALKMK--- 351 (851)
Q Consensus 300 gls~~~~~~~-------~~~vd~ViH~AA~~~~~------------------~~~~~~~~~Nv~Gt~~ll~~a~~~~--- 351 (851)
.++....+ +.++|++||+|+..... ..+......|+.+.......+....
T Consensus 67 --~~~~~~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (266)
T d1mxha_ 67 --LLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEG 144 (266)
T ss_dssp --HHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC---
T ss_pred --HHHHHHHHHHHHHHHhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccc
Confidence 11122222 24699999999964321 1233456677777776666655422
Q ss_pred -----CceEEEEeeeeeeeCCCcccccccCCCCCCHHHHHHHHhhccHHHHhhhCCcccCCCCchhhHHHHHHHHHHHHH
Q psy11859 352 -----KLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY 426 (851)
Q Consensus 352 -----~~~~fV~vSTa~~~~~~~~i~E~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Y~~SK~~aE~~v~~~ 426 (851)
....++.+|+..+.. +.|. ...|+.||+.-+.+.+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~----------~~~~----------------------------~~~Y~asKaal~~lt~~l 186 (266)
T d1mxha_ 145 GAWRSRNLSVVNLCDAMTDL----------PLPG----------------------------FCVYTMAKHALGGLTRAA 186 (266)
T ss_dssp ----CCCEEEEEECCGGGGS----------CCTT----------------------------CHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhccccc----------cCcc----------------------------hhhhhhhHHHHhhhHHHH
Confidence 123344444422211 1121 245999999999888766
Q ss_pred hC-----CCCEEEEecccccCCCCCCchhHhhhhcCCceE--EEEcccCceeEEEee--cC--CCCccEEEEeCC
Q psy11859 427 KT-----KLPVVIVRPSIVLPSFQEPVPGWVDSLNGPVGV--LVASGKGVVRSMILN--DL--STETQVFNISSN 490 (851)
Q Consensus 427 ~~-----~l~~~ivRp~~V~G~~~~p~p~~i~~~~~~~~~--~~~~g~~v~~~~~~~--~~--~~~~~iyni~~~ 490 (851)
+. ++.+..|.||.|.-+...+ ..+.+.+....++ ..+...+++.++... ++ --.|.++.+++|
T Consensus 187 A~e~~~~gIrVN~I~PG~i~t~~~~~-~~~~~~~~~~~pl~r~~~~peeva~~v~fL~s~~s~~itG~~i~vDGG 260 (266)
T d1mxha_ 187 ALELAPRHIRVNAVAPGLSLLPPAMP-QETQEEYRRKVPLGQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGG 260 (266)
T ss_dssp HHHHGGGTEEEEEEEESSBSCCSSSC-HHHHHHHHTTCTTTSCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHhCccCcEEEEeccCcEeccccCC-HHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhCchhCCccCCeEEECcc
Confidence 43 8999999999987654433 2233333222221 112233444432221 11 236777777776
|
| >d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 24 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=9.8e-08 Score=59.63 Aligned_cols=26 Identities=35% Similarity=0.671 Sum_probs=18.1
Q ss_pred ccccccCCccCccccChhhHHHHHhhhc
Q psy11859 718 RTFQCTYPECLKFYAKMSHLKAHLRRHS 745 (851)
Q Consensus 718 r~~~C~~~~Cgk~F~~~~~L~~H~~~H~ 745 (851)
|||+| ++|||+|.+.++|..|+++|+
T Consensus 1 KPy~C--~eCgK~F~~~s~L~~HqriHT 26 (26)
T d1x6ea2 1 KPYKC--LECGKAFSQNSGLINHQRIHT 26 (26)
T ss_dssp CCEEC--SSSCCEESSHHHHHHHHHHHH
T ss_pred CCccC--CCCcCeeccCcccccCccCCC
Confidence 56777 667777777777777777664
|
| >d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: ZIF268 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.30 E-value=1e-07 Score=61.57 Aligned_cols=29 Identities=28% Similarity=0.742 Sum_probs=22.9
Q ss_pred ccccccCCccCccccChhhHHHHHhhhcC
Q psy11859 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSG 746 (851)
Q Consensus 718 r~~~C~~~~Cgk~F~~~~~L~~H~~~H~g 746 (851)
|||+|.++.|+++|.+.++|.+|+++|+|
T Consensus 1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG 29 (29)
T d1a1ia1 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29 (29)
T ss_dssp CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence 57888777788888888888888888875
|
| >d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Five-finger GLI1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=1.4e-07 Score=61.44 Aligned_cols=30 Identities=37% Similarity=0.775 Sum_probs=27.6
Q ss_pred CccccCccccCccccCchhHHHhhhhcCCC
Q psy11859 748 RSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777 (851)
Q Consensus 748 kp~~C~~~~C~k~F~~~~~L~~H~r~H~ge 777 (851)
|||.|++..|+++|.++++|++|+++|+||
T Consensus 1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE 30 (30)
T d2glia3 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30 (30)
T ss_dssp CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence 699998556999999999999999999996
|
| >d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: SWI5 zinc-finger domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.25 E-value=2.8e-07 Score=61.05 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=22.2
Q ss_pred cccccccCCccCccccChhhHHHHHhhhcC
Q psy11859 717 VRTFQCTYPECLKFYAKMSHLKAHLRRHSG 746 (851)
Q Consensus 717 ~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~g 746 (851)
+|||.|.++.|+++|.+.++|.+|+++|+.
T Consensus 1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~ 30 (32)
T d1zfda_ 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30 (32)
T ss_dssp CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence 477777666677777777777777777764
|
| >d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Ying-yang 1 (yy1, zinc finger domain) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=1.6e-07 Score=59.92 Aligned_cols=28 Identities=32% Similarity=0.763 Sum_probs=21.6
Q ss_pred ccccccCCccCccccChhhHHHHHhhhc
Q psy11859 718 RTFQCTYPECLKFYAKMSHLKAHLRRHS 745 (851)
Q Consensus 718 r~~~C~~~~Cgk~F~~~~~L~~H~~~H~ 745 (851)
|||.|.++.|||+|.+.++|++|+++|+
T Consensus 1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT 28 (28)
T d1ubdc4 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28 (28)
T ss_dssp CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence 5777877778888888888888877775
|
| >d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Ying-yang 1 (yy1, zinc finger domain) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=1.3e-07 Score=61.76 Aligned_cols=30 Identities=33% Similarity=0.644 Sum_probs=27.6
Q ss_pred CccccCccccCccccCchhHHHhhhhcCCC
Q psy11859 748 RSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777 (851)
Q Consensus 748 kp~~C~~~~C~k~F~~~~~L~~H~r~H~ge 777 (851)
|||.|++..|+++|.++++|++|+|+|+||
T Consensus 1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE 30 (30)
T d1ubdc3 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30 (30)
T ss_dssp CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred CCccCCCCCCCceECcHHHcCccccccCCC
Confidence 699998556999999999999999999996
|
| >d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 24 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=2.4e-07 Score=57.87 Aligned_cols=26 Identities=35% Similarity=0.722 Sum_probs=24.7
Q ss_pred CccccCccccCccccCchhHHHhhhhcC
Q psy11859 748 RSFKCDWQDCKWQFSRSDELSRHRRSHF 775 (851)
Q Consensus 748 kp~~C~~~~C~k~F~~~~~L~~H~r~H~ 775 (851)
|||+|. +|||+|.+++.|.+|+|+||
T Consensus 1 KPy~C~--eCgK~F~~~s~L~~HqriHT 26 (26)
T d1x6ea2 1 KPYKCL--ECGKAFSQNSGLINHQRIHT 26 (26)
T ss_dssp CCEECS--SSCCEESSHHHHHHHHHHHH
T ss_pred CCccCC--CCcCeeccCcccccCccCCC
Confidence 699998 99999999999999999995
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.13 E-value=3.2e-08 Score=89.75 Aligned_cols=82 Identities=11% Similarity=-0.037 Sum_probs=64.6
Q ss_pred HHHHhhhhcccceeEEecCCCCCCCCcccccccccccccceecCC---CCCcccccccccccchhhhhhhhhhHHHHHHh
Q psy11859 81 EELALLGVTESNVYLIDIDGNGRFPPARVKCEFQEDSTKTIVEHN---LPDQTDVRGIHETDFKFTIKYREFTQEMLSEL 157 (851)
Q Consensus 81 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ddd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (851)
+++++|||. +|..+++.+..++ .|+++||+|||+.+.+..++ .....++.+.++ ..+.+++++++.+..++|
T Consensus 5 ~v~I~GaG~-~G~~l~~~l~~~~--~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~--~~i~iai~~i~~~~~~~I 79 (126)
T d2dt5a2 5 GLCIVGMGR-LGSALADYPGFGE--SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVP--GRIEIALLTVPREAAQKA 79 (126)
T ss_dssp EEEEECCSH-HHHHHHHCSCCCS--SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHST--TTCCEEEECSCHHHHHHH
T ss_pred eEEEEcCCH-HHHHHHHhHhhcC--CcEEEEEEeCchHhcCCEECCEEEecHHHHHHHHh--hcccEEEEeCCHHHHHHH
Confidence 468999999 9999999886654 68999999999999887776 223344444443 257789999999999999
Q ss_pred hhhhhhhhhh
Q psy11859 158 ISHSLYCRQR 167 (851)
Q Consensus 158 ~~~~~~~~~~ 167 (851)
+|.|..++.+
T Consensus 80 ~d~l~~~gIk 89 (126)
T d2dt5a2 80 ADLLVAAGIK 89 (126)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHcCCC
Confidence 9999988743
|
| >d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: ZIF268 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.03 E-value=5.9e-07 Score=57.94 Aligned_cols=29 Identities=45% Similarity=0.893 Sum_probs=26.9
Q ss_pred CccccCccccCccccCchhHHHhhhhcCC
Q psy11859 748 RSFKCDWQDCKWQFSRSDELSRHRRSHFG 776 (851)
Q Consensus 748 kp~~C~~~~C~k~F~~~~~L~~H~r~H~g 776 (851)
|||.|++..|+++|.++++|.+|+++|+|
T Consensus 1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG 29 (29)
T d1a1ia1 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29 (29)
T ss_dssp CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence 69999866799999999999999999987
|
| >d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: SWI5 zinc-finger domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.00 E-value=1.8e-06 Score=57.03 Aligned_cols=31 Identities=35% Similarity=0.777 Sum_probs=28.0
Q ss_pred CCccccCccccCccccCchhHHHhhhhcCCC
Q psy11859 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777 (851)
Q Consensus 747 ekp~~C~~~~C~k~F~~~~~L~~H~r~H~ge 777 (851)
||||.|.+..|+++|+++++|.+|+++|+.+
T Consensus 1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k 31 (32)
T d1zfda_ 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31 (32)
T ss_dssp CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence 6899998556999999999999999999864
|
| >d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Ying-yang 1 (yy1, zinc finger domain) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=1.1e-06 Score=55.92 Aligned_cols=28 Identities=29% Similarity=0.684 Sum_probs=26.0
Q ss_pred CccccCccccCccccCchhHHHhhhhcC
Q psy11859 748 RSFKCDWQDCKWQFSRSDELSRHRRSHF 775 (851)
Q Consensus 748 kp~~C~~~~C~k~F~~~~~L~~H~r~H~ 775 (851)
|||.|++..|+|+|+++++|++|+++|+
T Consensus 1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT 28 (28)
T d1ubdc4 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28 (28)
T ss_dssp CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence 6999986679999999999999999996
|
| >d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 64, ZFP68 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=1.4e-05 Score=47.11 Aligned_cols=25 Identities=32% Similarity=0.737 Sum_probs=12.5
Q ss_pred cccccCCccCccccChhhHHHHHhhhc
Q psy11859 719 TFQCTYPECLKFYAKMSHLKAHLRRHS 745 (851)
Q Consensus 719 ~~~C~~~~Cgk~F~~~~~L~~H~~~H~ 745 (851)
|++| +.|++.|+.+..|+.|++.|+
T Consensus 1 phkc--~~c~kcfsrkdklk~hmr~ht 25 (26)
T d2dmda2 1 PHKC--EVCGKCFSRKDKLKTHMRCHT 25 (26)
T ss_dssp CCCB--TTTTBCCCCHHHHHHHGGGCC
T ss_pred CCcc--chhhhHhcchhHHHHHhhccC
Confidence 3445 445555555555555555554
|
| >d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 64, ZFP68 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=1.4e-05 Score=47.10 Aligned_cols=26 Identities=46% Similarity=0.802 Sum_probs=20.4
Q ss_pred ccccCccccCccccCchhHHHhhhhcCC
Q psy11859 749 SFKCDWQDCKWQFSRSDELSRHRRSHFG 776 (851)
Q Consensus 749 p~~C~~~~C~k~F~~~~~L~~H~r~H~g 776 (851)
|++|+ .|++.|+++..|+.|+|.|+|
T Consensus 1 phkc~--~c~kcfsrkdklk~hmr~htg 26 (26)
T d2dmda2 1 PHKCE--VCGKCFSRKDKLKTHMRCHTG 26 (26)
T ss_dssp CCCBT--TTTBCCCCHHHHHHHGGGCCC
T ss_pred CCccc--hhhhHhcchhHHHHHhhccCC
Confidence 56787 788888888888888888875
|
| >d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: PATZ1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=1.8e-05 Score=50.19 Aligned_cols=26 Identities=35% Similarity=0.655 Sum_probs=14.0
Q ss_pred CccCccccChhhHHHHHhhhcCCCcc
Q psy11859 725 PECLKFYAKMSHLKAHLRRHSGERSF 750 (851)
Q Consensus 725 ~~Cgk~F~~~~~L~~H~~~H~gekp~ 750 (851)
..|||.|....+|.+|...|++|+||
T Consensus 9 e~cgk~frdvyhlnrhklshs~ekpy 34 (35)
T d2epra1 9 EICGKIFRDVYHLNRHKLSHSGEKPY 34 (35)
T ss_dssp TTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred HHHHHHHHHHHHHHhhhcccCCCCCC
Confidence 44555555555555555555555554
|
| >d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: PATZ1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=3.3e-05 Score=48.94 Aligned_cols=32 Identities=38% Similarity=0.683 Sum_probs=29.4
Q ss_pred CccccCccccCccccCchhHHHhhhhcCCCCCcc
Q psy11859 748 RSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYP 781 (851)
Q Consensus 748 kp~~C~~~~C~k~F~~~~~L~~H~r~H~gekp~~ 781 (851)
+...|+ .|||.|....+|.+|...|+|||||.
T Consensus 4 k~~~ce--~cgk~frdvyhlnrhklshs~ekpys 35 (35)
T d2epra1 4 KQVACE--ICGKIFRDVYHLNRHKLSHSGEKPYS 35 (35)
T ss_dssp CSEEET--TTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred hhhhHH--HHHHHHHHHHHHHhhhcccCCCCCCC
Confidence 457898 89999999999999999999999984
|
| >d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Ying-yang 1 (yy1, zinc finger domain) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=5.7e-05 Score=45.46 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=11.3
Q ss_pred CccCccccChhhHHHHHhhhcC
Q psy11859 725 PECLKFYAKMSHLKAHLRRHSG 746 (851)
Q Consensus 725 ~~Cgk~F~~~~~L~~H~~~H~g 746 (851)
.+|||+|.-++.|++|+.+|+|
T Consensus 6 ~ecgkaf~essklkrh~lvhtg 27 (28)
T d1ubdc2 6 AECGKAFVESSKLKRHQLVHTG 27 (28)
T ss_dssp TTTCCEESSHHHHHHHGGGTSC
T ss_pred HHHhHHHHHHHHHHHHhhcccC
Confidence 4455555555555555555544
|
| >d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transcription factor IIIA, TFIIIA species: Xenopus laevis [TaxId: 8355]
Probab=97.23 E-value=7.5e-05 Score=45.50 Aligned_cols=30 Identities=33% Similarity=0.678 Sum_probs=26.1
Q ss_pred ccccccCCccCccccChhhHHHHHhhhcCC
Q psy11859 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGE 747 (851)
Q Consensus 718 r~~~C~~~~Cgk~F~~~~~L~~H~~~H~ge 747 (851)
|||.|.+..|.|.|.+..+|.+|..+|+||
T Consensus 1 ~pfpc~~egc~kgf~tlhhltrhs~thtge 30 (30)
T d1tf3a2 1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 30 (30)
T ss_dssp CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred CCcCcccccccccchhhhhhhhhhccccCC
Confidence 688898888999999999999998888875
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.16 E-value=0.001 Score=62.74 Aligned_cols=127 Identities=14% Similarity=0.029 Sum_probs=76.2
Q ss_pred hhhhcCCCEEEEecCccHHHHHHHHHHHHhC----CCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCe
Q psy11859 212 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSC----PDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRL 287 (851)
Q Consensus 212 i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g----~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v 287 (851)
....-+.-+|.||||+|.||.+|+-.|++.. .....+++++..+.......-.-++.+. ..+.+
T Consensus 18 ~~~~k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~------------a~~~~ 85 (175)
T d7mdha1 18 TKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDS------------LYPLL 85 (175)
T ss_dssp ---CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT------------TCTTE
T ss_pred hhccCCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccc------------ccccc
Confidence 3444455689999999999999999888632 1223666776655321111100011110 11122
Q ss_pred E-EEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 288 H-IIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 288 ~-~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
. .+.++ +....++++|+||=+|+..+- ..+..+.+..|+.-.+.+.++..+......+|.+-|
T Consensus 86 ~~~~~~~-----------~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~ 150 (175)
T d7mdha1 86 REVSIGI-----------DPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG 150 (175)
T ss_dssp EEEEEES-----------CHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred cCccccc-----------cchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence 1 12121 234567899999999998654 456778999999999999999988632234444434
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.14 E-value=0.00092 Score=60.89 Aligned_cols=115 Identities=18% Similarity=0.117 Sum_probs=78.4
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcC
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANL 299 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~l 299 (851)
+|.|+||+|.+|+.++-.|..+ +-+.++.+++..+. .....++.. ........ +-+. ..
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~-~~~~elvLiDi~~~----~~~a~Dl~~-----------~~~~~~~~---~~~~-~~- 60 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNS-PLVSRLTLYDIAHT----PGVAADLSH-----------IETRATVK---GYLG-PE- 60 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTC-TTCSEEEEEESSSH----HHHHHHHTT-----------SSSSCEEE---EEES-GG-
T ss_pred eEEEECCCChHHHHHHHHHHhC-CccceEEEEecccc----chhhHHHhh-----------hhhhcCCC---eEEc-CC-
Confidence 7999999999999998877765 46688999987531 111112211 11111122 2222 11
Q ss_pred CCCHHHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 300 GIKDSDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 300 gls~~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
+....++++|+|+-+|+..+-+ ++..+.++.|+.-.+.+++...+++ .+.++.+-|
T Consensus 61 -----~~~~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~-p~~iiivvt 117 (144)
T d1mlda1 61 -----QLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIIS 117 (144)
T ss_dssp -----GHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECS
T ss_pred -----ChHHHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcC-CCeEEEEec
Confidence 5566779999999999975443 3445789999999999999999985 677777766
|
| >d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Ying-yang 1 (yy1, zinc finger domain) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.00013 Score=43.85 Aligned_cols=27 Identities=33% Similarity=0.604 Sum_probs=24.7
Q ss_pred ccccCccccCccccCchhHHHhhhhcCCC
Q psy11859 749 SFKCDWQDCKWQFSRSDELSRHRRSHFGI 777 (851)
Q Consensus 749 p~~C~~~~C~k~F~~~~~L~~H~r~H~ge 777 (851)
.+.|. +|||+|..++.|++|+..|+||
T Consensus 2 ~hvc~--ecgkaf~essklkrh~lvhtge 28 (28)
T d1ubdc2 2 VHVCA--ECGKAFVESSKLKRHQLVHTGE 28 (28)
T ss_dssp CEECT--TTCCEESSHHHHHHHGGGTSCC
T ss_pred cchHH--HHhHHHHHHHHHHHHhhcccCC
Confidence 36797 9999999999999999999986
|
| >d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Five-finger GLI1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.04 E-value=0.0001 Score=46.04 Aligned_cols=30 Identities=30% Similarity=0.579 Sum_probs=22.7
Q ss_pred ccccccCCccCccccChhhHHHHH-hhhcCC
Q psy11859 718 RTFQCTYPECLKFYAKMSHLKAHL-RRHSGE 747 (851)
Q Consensus 718 r~~~C~~~~Cgk~F~~~~~L~~H~-~~H~ge 747 (851)
|||.|.++.|.|+|+..+.--.|+ ++|+.|
T Consensus 1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~e 31 (31)
T d2glia4 1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 31 (31)
T ss_dssp CCEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred CCccccCCChhhhhcchhhhhhhccccccCC
Confidence 578887777888888888877886 777643
|
| >d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Five-finger GLI1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.00016 Score=44.74 Aligned_cols=28 Identities=29% Similarity=0.689 Sum_probs=20.5
Q ss_pred ccccccCCccCccccChhhHHHHHhhhc
Q psy11859 718 RTFQCTYPECLKFYAKMSHLKAHLRRHS 745 (851)
Q Consensus 718 r~~~C~~~~Cgk~F~~~~~L~~H~~~H~ 745 (851)
|||.|..+.|+|++...++|..|++.+.
T Consensus 1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H 28 (29)
T d2glia5 1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH 28 (29)
T ss_dssp CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence 5777777777777777777777777654
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.02 E-value=0.00098 Score=60.78 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=74.4
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|.|+||+|.+|+.++-.|....+.+.+|.+++..+. ......++... ........+.+ .+
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~---~~g~a~Dl~h~-----------~~~~~~~~~~~----~~ 62 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV---TPGVAVDLSHI-----------PTAVKIKGFSG----ED 62 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT---HHHHHHHHHTS-----------CSSCEEEEECS----SC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc---chhHHHHHHCC-----------ccccCCcEEEc----CC
Confidence 68999999999999999877665456688999987532 12111122111 11112222211 11
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEe
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHF 359 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~v 359 (851)
+++ .+++.|+||-+|+..+- .++-.+.++.|..-.+.+.+...+.. .+.+|.+
T Consensus 63 ------~~~-~~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~-p~aiviv 116 (145)
T d2cmda1 63 ------ATP-ALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGI 116 (145)
T ss_dssp ------CHH-HHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEE
T ss_pred ------Ccc-ccCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhC-CCcEEEE
Confidence 233 46799999999997643 33445778999999999999998875 4444433
|
| >d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: ZIF268 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.01 E-value=0.00014 Score=44.36 Aligned_cols=27 Identities=48% Similarity=0.945 Sum_probs=18.5
Q ss_pred CCccccCccccCccccCchhHHHhhhhcC
Q psy11859 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHF 775 (851)
Q Consensus 747 ekp~~C~~~~C~k~F~~~~~L~~H~r~H~ 775 (851)
|+||.|+ .||+.|.++...++|.++|.
T Consensus 1 EkPf~C~--~CgrkFArsderkRH~kiH~ 27 (28)
T d1a1ia3 1 EKPFACD--ICGRKFARSDERKRHTKIHL 27 (28)
T ss_dssp CCCEECT--TTCCEESSHHHHHHHHGGGC
T ss_pred CCCcccc--hhhhhhhcchhhhhhhhhcc
Confidence 4677776 67777777777777776663
|
| >d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 64, ZFP68 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=0.00022 Score=43.06 Aligned_cols=8 Identities=50% Similarity=0.829 Sum_probs=2.8
Q ss_pred hHHHHHhh
Q psy11859 736 HLKAHLRR 743 (851)
Q Consensus 736 ~L~~H~~~ 743 (851)
.|..|.+.
T Consensus 18 qltvhlr~ 25 (29)
T d2dmda3 18 QLTVHLRS 25 (29)
T ss_dssp HHHHHHTT
T ss_pred heEEeeec
Confidence 33333333
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.88 E-value=0.0028 Score=57.60 Aligned_cols=120 Identities=10% Similarity=0.025 Sum_probs=74.6
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|.|.||+|.+|+.++-.|+.++ -+.+|.++++.+.-...+....++. .-......++....+--.+.
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~-l~~el~L~D~~~~~~~~~g~a~Dl~---------~~~~~~~~~~~~~~~~~~d~- 69 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEP-FMKDLVLIGREHSINKLEGLREDIY---------DALAGTRSDANIYVESDENL- 69 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCT-TCCEEEEEECGGGHHHHHHHHHHHH---------HHHTTSCCCCEEEEEETTCG-
T ss_pred CEEEEECCCChHHHHHHHHHHhCC-cccccccccchhhhHhhhcccccch---------hcccccccCCccccCCcchH-
Confidence 689999999999999999888764 4578999988643111111111111 11111122333321111111
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEe
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHF 359 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~v 359 (851)
..++++|+|+=+|+...- ..+-.+.++.|+.-.+.+++...+.. .+.++.+
T Consensus 70 ---------~~l~~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~-~~~iivV 121 (145)
T d1hyea1 70 ---------RIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVI 121 (145)
T ss_dssp ---------GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEC
T ss_pred ---------HHhccceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccC-CCeEEEE
Confidence 235789999999997654 34556889999999999999998875 3444434
|
| >d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 64, ZFP68 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.00026 Score=42.72 Aligned_cols=29 Identities=45% Similarity=0.745 Sum_probs=26.6
Q ss_pred CCccccCccccCccccCchhHHHhhhhcCCC
Q psy11859 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777 (851)
Q Consensus 747 ekp~~C~~~~C~k~F~~~~~L~~H~r~H~ge 777 (851)
|+||+|. .|......++.|..|.|.|+|.
T Consensus 1 erpfkcq--lcsy~srnssqltvhlr~htgd 29 (29)
T d2dmda3 1 ERPFKCQ--ICPYASRNSSQLTVHLRSHTGD 29 (29)
T ss_dssp CCCEECS--SSSCEESSHHHHHHHHTTCCSC
T ss_pred CCcceee--ecccccCCchheEEeeecccCc
Confidence 6899997 8999999999999999999984
|
| >d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transcription factor IIIA, TFIIIA species: Xenopus laevis [TaxId: 8355]
Probab=96.79 E-value=0.00033 Score=42.41 Aligned_cols=27 Identities=30% Similarity=0.510 Sum_probs=18.1
Q ss_pred ccccccCCccCccccChhhHHHHHhhh
Q psy11859 718 RTFQCTYPECLKFYAKMSHLKAHLRRH 744 (851)
Q Consensus 718 r~~~C~~~~Cgk~F~~~~~L~~H~~~H 744 (851)
.||+|.+..|+++|...+.|++|.++|
T Consensus 2 ~py~c~hegcdk~fs~ps~lkrhekvh 28 (29)
T d2j7ja2 2 LPYECPHEGCDKRFSLPSRLKRHEKVH 28 (29)
T ss_dssp CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred CCccCCccCccccccCHHHHhhhhhcc
Confidence 466666666677776666677666665
|
| >d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: ZIF268 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.79 E-value=0.00032 Score=42.79 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=23.1
Q ss_pred cccccccCCccCccccChhhHHHHHhhhc
Q psy11859 717 VRTFQCTYPECLKFYAKMSHLKAHLRRHS 745 (851)
Q Consensus 717 ~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~ 745 (851)
+|||.| ..||+.|..+...++|.++|.
T Consensus 1 EkPf~C--~~CgrkFArsderkRH~kiH~ 27 (28)
T d1a1ia3 1 EKPFAC--DICGRKFARSDERKRHTKIHL 27 (28)
T ss_dssp CCCEEC--TTTCCEESSHHHHHHHHGGGC
T ss_pred CCCccc--chhhhhhhcchhhhhhhhhcc
Confidence 588999 779999999999999988884
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=96.73 E-value=0.0039 Score=56.74 Aligned_cols=117 Identities=11% Similarity=0.072 Sum_probs=74.6
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
+.++|.|.|+ |.+|+.++..|+..+ -+.+|+++++.+... .....++... .. .........+|..
T Consensus 4 ~~~KI~IIGa-G~VG~~~A~~l~~~~-~~~elvL~D~~~~~~--~g~a~Dl~~a---------~~-~~~~~~~~~~d~~- 68 (146)
T d1ez4a1 4 NHQKVVLVGD-GAVGSSYAFAMAQQG-IAEEFVIVDVVKDRT--KGDALDLEDA---------QA-FTAPKKIYSGEYS- 68 (146)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSSHHHH--HHHHHHHHGG---------GG-GSCCCEEEECCGG-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcC-CCcEEEEeecccchh--HHHHHHHhcc---------cc-ccCCceEeeccHH-
Confidence 4578999996 999999999999885 357899999864311 1111122111 11 1123445566643
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
.+.++|+|+-+|+...-. .+..+....|+.-.+.+++...+.. .+.++.+-|
T Consensus 69 ------------~~~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~-p~aivivvt 121 (146)
T d1ez4a1 69 ------------DCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFLVAA 121 (146)
T ss_dssp ------------GGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEEECS
T ss_pred ------------HhccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcC-CCcEEEEeC
Confidence 247899999999876543 3445778999999999999998875 666666665
|
| >d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: PATZ1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.69 E-value=0.0004 Score=42.88 Aligned_cols=28 Identities=25% Similarity=0.695 Sum_probs=17.2
Q ss_pred cccccccCCccCccccChhhHHHHHhhhcC
Q psy11859 717 VRTFQCTYPECLKFYAKMSHLKAHLRRHSG 746 (851)
Q Consensus 717 ~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~g 746 (851)
++||+| +.|+..|..+..+.-|.+.|.|
T Consensus 1 ekp~~c--pic~qrfkrkdrmsyhvrshdg 28 (32)
T d2epqa1 1 EKPYSC--PVCGLRFKRKDRMSYHVRSHDG 28 (32)
T ss_dssp CCSSEE--TTTTEECSCHHHHHHHHHHHSC
T ss_pred CCCccc--chHHHHhhccccceEeeecccC
Confidence 356666 5666666666666666666654
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=96.67 E-value=0.0052 Score=55.49 Aligned_cols=117 Identities=11% Similarity=-0.016 Sum_probs=76.8
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcC
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANL 299 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~l 299 (851)
+|.|+||+|.+|+.++-.|+.++ -+.++.+++...+.........++.. -.+ ...+..+..+|..+
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~-l~~el~L~Di~~~~~~~~g~a~Dl~~---------~~~-~~~~~~i~~~~~~~--- 67 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRD-IADEVVFVDIPDKEDDTVGQAADTNH---------GIA-YDSNTRVRQGGYED--- 67 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CCSEEEEECCGGGHHHHHHHHHHHHH---------HHT-TTCCCEEEECCGGG---
T ss_pred eEEEECCCCcHHHHHHHHHHhCC-CCCEEEEEecCCcccccceeecchhh---------ccc-ccCCceEeeCCHHH---
Confidence 79999999999999999998874 56789998874321111111111111 001 12344445555431
Q ss_pred CCCHHHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 300 GIKDSDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 300 gls~~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
+.++|+|+=+|+..+-+ ++-.+.++.|+.-.+.+++...+.. .+.++.+=|
T Consensus 68 ----------~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~-p~~i~ivvt 119 (142)
T d1o6za1 68 ----------TAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLTTS 119 (142)
T ss_dssp ----------GTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEECC
T ss_pred ----------hhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcC-CCceEEEec
Confidence 36899999999965543 4566889999999999999998875 455544434
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.49 E-value=0.0026 Score=56.80 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=51.9
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|+|.|+ |.+|+.|++.|.+.| ..|.+++..+. ++++ +.++ -.+.++.||.++++
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g---~~v~vid~d~~------~~~~---------~~~~-----~~~~vi~Gd~~~~~ 56 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKG---HDIVLIDIDKD------ICKK---------ASAE-----IDALVINGDCTKIK 56 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESCHH------HHHH---------HHHH-----CSSEEEESCTTSHH
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC---CCcceecCChh------hhhh---------hhhh-----hhhhhccCcccchh
Confidence 68999998 999999999999988 67888877532 2222 1111 15678999999986
Q ss_pred CCCCHHHHHHH-hcCccEEEEc
Q psy11859 299 LGIKDSDLLML-QEEVSVVFNG 319 (851)
Q Consensus 299 lgls~~~~~~~-~~~vd~ViH~ 319 (851)
.+..+ +++++.|+=+
T Consensus 57 ------~l~~~~i~~a~~vv~~ 72 (132)
T d1lssa_ 57 ------TLEDAGIEDADMYIAV 72 (132)
T ss_dssp ------HHHHTTTTTCSEEEEC
T ss_pred ------hhhhcChhhhhhhccc
Confidence 55554 5678887764
|
| >d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: PATZ1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.48 E-value=0.00051 Score=42.40 Aligned_cols=29 Identities=41% Similarity=0.786 Sum_probs=26.6
Q ss_pred CCccccCccccCccccCchhHHHhhhhcCCC
Q psy11859 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777 (851)
Q Consensus 747 ekp~~C~~~~C~k~F~~~~~L~~H~r~H~ge 777 (851)
|+||.|+ .|+..|.++..+..|.|.|.|.
T Consensus 1 ekp~~cp--ic~qrfkrkdrmsyhvrshdg~ 29 (32)
T d2epqa1 1 EKPYSCP--VCGLRFKRKDRMSYHVRSHDGS 29 (32)
T ss_dssp CCSSEET--TTTEECSCHHHHHHHHHHHSCC
T ss_pred CCCcccc--hHHHHhhccccceEeeecccCc
Confidence 6899998 8999999999999999999874
|
| >d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: GLI-Krueppel family member HKR3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.46 E-value=0.00091 Score=39.53 Aligned_cols=26 Identities=42% Similarity=0.856 Sum_probs=18.8
Q ss_pred cccCCccCccccChhhHHHHHhhhcCCC
Q psy11859 721 QCTYPECLKFYAKMSHLKAHLRRHSGER 748 (851)
Q Consensus 721 ~C~~~~Cgk~F~~~~~L~~H~~~H~gek 748 (851)
+| +.|.++|.++..|+.|-+.|+||+
T Consensus 2 qc--p~c~k~f~skyylkvhnr~htgek 27 (27)
T d2dlqa4 2 EC--PTCHKKFLSKYYLKVHNRKHTGEK 27 (27)
T ss_dssp CC--TTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred cC--cchHHHHHHhHhhhhccccccCCC
Confidence 46 677777777777777777777764
|
| >d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transcription factor IIIA, TFIIIA species: Xenopus laevis [TaxId: 8355]
Probab=96.46 E-value=0.00057 Score=41.39 Aligned_cols=27 Identities=30% Similarity=0.710 Sum_probs=24.9
Q ss_pred CccccCccccCccccCchhHHHhhhhc
Q psy11859 748 RSFKCDWQDCKWQFSRSDELSRHRRSH 774 (851)
Q Consensus 748 kp~~C~~~~C~k~F~~~~~L~~H~r~H 774 (851)
.||+|++..|+++|+..+.|++|.++|
T Consensus 2 ~py~c~hegcdk~fs~ps~lkrhekvh 28 (29)
T d2j7ja2 2 LPYECPHEGCDKRFSLPSRLKRHEKVH 28 (29)
T ss_dssp CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred CCccCCccCccccccCHHHHhhhhhcc
Confidence 589999878999999999999999987
|
| >d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Five-finger GLI1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.44 E-value=0.00068 Score=41.95 Aligned_cols=29 Identities=17% Similarity=0.620 Sum_probs=25.9
Q ss_pred CccccCccccCccccCchhHHHhhhhcCC
Q psy11859 748 RSFKCDWQDCKWQFSRSDELSRHRRSHFG 776 (851)
Q Consensus 748 kp~~C~~~~C~k~F~~~~~L~~H~r~H~g 776 (851)
|||.|....|++++...++|++|++.++|
T Consensus 1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG 29 (29)
T d2glia5 1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG 29 (29)
T ss_dssp CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence 68999866799999999999999998765
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.41 E-value=0.0049 Score=56.15 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=77.4
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
.+++|-|.|| |.+|+.++-.|+..+ -+.+|.++++.+... .....++. .-.......+.+..+|..
T Consensus 5 ~~~KI~IiGa-G~vG~~~a~~l~~~~-l~~el~L~Di~~~~~--~g~a~Dl~---------~~~~~~~~~~~~~~~d~~- 70 (148)
T d1ldna1 5 GGARVVVIGA-GFVGASYVFALMNQG-IADEIVLIDANESKA--IGDAMDFN---------HGKVFAPKPVDIWHGDYD- 70 (148)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSSHHHH--HHHHHHHH---------HHTTSSSSCCEEEECCGG-
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhcC-CCceEEEEeeccccc--cchhccHh---------hCccccCCCeEEEECCHH-
Confidence 4678999997 999999999999885 457899998864321 11111111 111111224445555543
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
.++++|+|+-+|+...- .....+.+..|+.-.+.+++...++. .+.++.+-|
T Consensus 71 ------------~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~~ivvt 123 (148)
T d1ldna1 71 ------------DCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVAT 123 (148)
T ss_dssp ------------GTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECS
T ss_pred ------------HhccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhC-CCceEEEec
Confidence 24689999999987653 33445778889999999999888875 455555444
|
| >d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 297b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.22 E-value=0.00011 Score=49.21 Aligned_cols=18 Identities=44% Similarity=1.034 Sum_probs=9.1
Q ss_pred CCCCccCCCCCCcccccc
Q psy11859 776 GIKPYPCTLCVKKSLLAI 793 (851)
Q Consensus 776 gekp~~C~~Cgk~f~~~~ 793 (851)
|.|||.|..|+|+|.++.
T Consensus 2 GiKPYeC~~C~KrFMWRD 19 (44)
T d2csha2 2 GIKPYECNICAKRFMWRD 19 (44)
T ss_dssp CCCCEECSSSCCEESCHH
T ss_pred CCCceeccchhhhhhhHH
Confidence 445555555555554443
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.16 E-value=0.0075 Score=55.26 Aligned_cols=122 Identities=15% Similarity=0.021 Sum_probs=71.0
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCc-----cEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEE
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDI-----GKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIE 291 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v-----~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~ 291 (851)
+.++|.|+||+|++|++++-.|+... -+ ..+.++.-.... ...+-..... .. .....+..+.
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~~-l~~~~~~~~~~l~~~~~~~-~~~~~~~~~~----------~~-~~~~~~~~~~ 69 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAGE-MLGKDQPVILQLLEIPQAM-KALEGVVMEL----------ED-CAFPLLAGLE 69 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTT-TTCTTCCEEEEEECCGGGH-HHHHHHHHHH----------HT-TTCTTEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcc-ccccccchhHhHhccccch-hhHcCchhhh----------hc-cccccccccc
Confidence 35689999999999999999988653 11 122333222211 1111110000 00 1112233332
Q ss_pred cCCCCCcCCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 292 GDILQANLGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 292 gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
+.- .....++++|+|+=+|+..+- ..+..+.+..|+.-.+.+.+...+......+|.+-|
T Consensus 70 ~~~----------~~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs 130 (154)
T d1y7ta1 70 ATD----------DPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG 130 (154)
T ss_dssp EES----------CHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred cCC----------chhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence 221 234567899999999997654 346668899999999999999988532334444433
|
| >d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transactivation domain of cre-bp1/atf-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.12 E-value=0.0015 Score=43.16 Aligned_cols=30 Identities=30% Similarity=0.594 Sum_probs=25.5
Q ss_pred CcccccccCCccCccccChhhHHHHHhhhc
Q psy11859 716 LVRTFQCTYPECLKFYAKMSHLKAHLRRHS 745 (851)
Q Consensus 716 ~~r~~~C~~~~Cgk~F~~~~~L~~H~~~H~ 745 (851)
.+|||.|..+.|+.+|.+..+|..|...|.
T Consensus 3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~ 32 (38)
T d1bhia_ 3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32 (38)
T ss_dssp TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred CCCceecCCCCccccccchHHHHHhhhhhe
Confidence 478999988889999999999988888774
|
| >d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Enhancer binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.09 E-value=0.0016 Score=39.51 Aligned_cols=26 Identities=23% Similarity=0.680 Sum_probs=12.9
Q ss_pred cccCccccCccccCchhHHHhhhhcCCC
Q psy11859 750 FKCDWQDCKWQFSRSDELSRHRRSHFGI 777 (851)
Q Consensus 750 ~~C~~~~C~k~F~~~~~L~~H~r~H~ge 777 (851)
|.|+ .||.....++-|+.|.|+|+++
T Consensus 2 YvC~--~Cg~~C~KPSvL~KHIRsHT~~ 27 (28)
T d1bboa1 2 YICE--ECGIRAKKPSMLKKHIRTHTDV 27 (28)
T ss_dssp CBCT--TTCCBCSSHHHHHHHHHHTSSC
T ss_pred cccc--ccCcccCCHHHHHHHHHHhcCC
Confidence 3444 4555555555555555555544
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.08 E-value=0.0043 Score=56.99 Aligned_cols=110 Identities=17% Similarity=0.040 Sum_probs=66.5
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhC----CCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhC-cccCCCeEEEEc
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSC----PDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC-PAQLSRLHIIEG 292 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g----~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~-~~~~~~v~~v~g 292 (851)
.++|.|+||+|.+|++++-.|+..+ ..+..+++++..+.. ...+.+ ..+. .........+.+
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~----~~~~~l---------~~~~~~~~~~~~~~~~~ 69 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMM----GVLDGV---------LMELQDCALPLLKDVIA 69 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGH----HHHHHH---------HHHHHHTCCTTEEEEEE
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccch----hhhhhh---------hhhhccccccccccccc
Confidence 4689999999999999999887542 123355665554321 111110 0000 001112222211
Q ss_pred CCCCCcCCCCHHHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhc
Q psy11859 293 DILQANLGIKDSDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKM 350 (851)
Q Consensus 293 Di~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~ 350 (851)
.+ +....++++|+|+=+|+...-+ ++..+.++.|+.-.+.+.+...+.
T Consensus 70 --~~--------~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~ 118 (154)
T d5mdha1 70 --TD--------KEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKY 118 (154)
T ss_dssp --ES--------CHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred --Cc--------ccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhh
Confidence 11 2245678999999999976543 344577899999999999887664
|
| >d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Five-finger GLI1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.02 E-value=0.0013 Score=41.08 Aligned_cols=30 Identities=23% Similarity=0.666 Sum_probs=26.2
Q ss_pred CccccCccccCccccCchhHHHhh-hhcCCC
Q psy11859 748 RSFKCDWQDCKWQFSRSDELSRHR-RSHFGI 777 (851)
Q Consensus 748 kp~~C~~~~C~k~F~~~~~L~~H~-r~H~ge 777 (851)
|||.|....|.|+|+..+.-.+|+ |+|..|
T Consensus 1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~e 31 (31)
T d2glia4 1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 31 (31)
T ss_dssp CCEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred CCccccCCChhhhhcchhhhhhhccccccCC
Confidence 689998777999999999999997 898754
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.0093 Score=58.15 Aligned_cols=80 Identities=11% Similarity=0.099 Sum_probs=53.2
Q ss_pred cCCCEEEEecC----------------ccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhh
Q psy11859 216 YAGRSVLVTGG----------------TGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKE 279 (851)
Q Consensus 216 ~~~k~VlVTGa----------------tGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~ 279 (851)
++|++||||+| ||-+|..|++.+.+.| ..|.++.-+....
T Consensus 4 l~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~G---a~V~li~g~~~~~--------------------- 59 (223)
T d1u7za_ 4 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRG---ANVTLVSGPVSLP--------------------- 59 (223)
T ss_dssp TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTT---CEEEEEECSCCCC---------------------
T ss_pred cCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcC---CchhhhhcccccC---------------------
Confidence 57888888875 7999999999999999 6777766544321
Q ss_pred CcccCCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcc
Q psy11859 280 CPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLE 326 (851)
Q Consensus 280 ~~~~~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~ 326 (851)
....+..+...=.+.- ...+...+.+.|++|++||...|.
T Consensus 60 ---~p~~~~~~~~~t~~~m----~~~~~~~~~~~D~~i~aAAvsDf~ 99 (223)
T d1u7za_ 60 ---TPPFVKRVDVMTALEM----EAAVNASVQQQNIFIGCAAVADYR 99 (223)
T ss_dssp ---CCTTEEEEECCSHHHH----HHHHHHHGGGCSEEEECCBCCSEE
T ss_pred ---cccccccceehhhHHH----HHHHHhhhccceeEeeeechhhhh
Confidence 1124555443211111 113334456899999999998874
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.94 E-value=0.0053 Score=55.73 Aligned_cols=39 Identities=21% Similarity=0.366 Sum_probs=30.6
Q ss_pred CEEEEecCccHHHHHHHHHHHHhC-CCccEEEEEecCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSC-PDIGKVYILCRAKRG 257 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g-~~v~~V~~l~R~~~~ 257 (851)
|+|.|.||||++|+.|++.|++.. ..+..++++.++...
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~ 41 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLG 41 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTT
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccc
Confidence 589999999999999999999752 145678887766543
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=95.91 E-value=0.0065 Score=56.53 Aligned_cols=75 Identities=25% Similarity=0.270 Sum_probs=51.4
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
++|+|+|-|| |++|+.+++.|.+.| +.|++.+|... +.+++.+ ..+.......+..+
T Consensus 1 ~~K~IliiGa-G~~G~~~a~~L~~~g---~~V~v~dr~~~------~a~~l~~-------------~~~~~~~~~~~~~~ 57 (182)
T d1e5qa1 1 ATKSVLMLGS-GFVTRPTLDVLTDSG---IKVTVACRTLE------SAKKLSA-------------GVQHSTPISLDVND 57 (182)
T ss_dssp CCCEEEEECC-STTHHHHHHHHHTTT---CEEEEEESCHH------HHHHHHT-------------TCTTEEEEECCTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC---CEEEEEECChH------HHHHHHh-------------cccccccccccccc
Confidence 4689999987 999999999999988 68999999753 2222211 12244444455554
Q ss_pred CcCCCCHHHHHHHhcCccEEEEcc
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGA 320 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~A 320 (851)
.. .....+...|.++.+.
T Consensus 58 ~~------~~~~~i~~~~~~i~~~ 75 (182)
T d1e5qa1 58 DA------ALDAEVAKHDLVISLI 75 (182)
T ss_dssp HH------HHHHHHTTSSEEEECS
T ss_pred hh------hhHhhhhccceeEeec
Confidence 43 6666777888888554
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=95.87 E-value=0.02 Score=53.64 Aligned_cols=36 Identities=22% Similarity=0.438 Sum_probs=29.1
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK 255 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~ 255 (851)
++|.|.|||||+|..|++-|... |++.-..+..++.
T Consensus 2 ikVaIiGATGyvG~eLlrlL~~H-P~~ei~~l~~~s~ 37 (179)
T d2g17a1 2 LNTLIVGASGYAGAELVSYVNRH-PHMTITALTVSAQ 37 (179)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHC-TTEEEEEEEEETT
T ss_pred cEEEEECcccHHHHHHHHHHHhC-CCCceEeeEeecc
Confidence 58999999999999999987765 8876556666554
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=95.84 E-value=0.012 Score=53.26 Aligned_cols=116 Identities=13% Similarity=0.122 Sum_probs=74.5
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|-|.|| |.+|+.++-.|+..+ -+.+|.++++.+... .....++. +-.+..........+|..
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~-~~~elvL~Di~~~~~--~g~~~Dl~---------~a~~~~~~~~~~~~~d~~--- 65 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQG-VADDYVFIDANEAKV--KADQIDFQ---------DAMANLEAHGNIVINDWA--- 65 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSSHHHH--HHHHHHHH---------HHGGGSSSCCEEEESCGG---
T ss_pred CeEEEECc-CHHHHHHHHHHHhcC-CCceEEEEecccchh--hhHHHhhh---------ccccccCCccceeccCHH---
Confidence 68999995 999999999999875 457899888764321 11111111 111112223444555543
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcch-----hHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLEA-----ELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~~-----~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
.+++.|+|+=+|+..+... +-.+.++.|+.-.+.+++...+.. .+.++.+-|
T Consensus 66 ----------~l~~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~-p~aivivvt 122 (146)
T d1hyha1 66 ----------ALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVIS 122 (146)
T ss_dssp ----------GGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECS
T ss_pred ----------HhccccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEEec
Confidence 2478999999998754221 122457889999999999998875 566666665
|
| >d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Enhancer binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.80 E-value=0.0031 Score=38.25 Aligned_cols=27 Identities=41% Similarity=0.608 Sum_probs=21.9
Q ss_pred ccccCCccCccccChhhHHHHHhhhcCCC
Q psy11859 720 FQCTYPECLKFYAKMSHLKAHLRRHSGER 748 (851)
Q Consensus 720 ~~C~~~~Cgk~F~~~~~L~~H~~~H~gek 748 (851)
|.| +.||......+-|+.|+++|++++
T Consensus 2 YvC--~~Cg~~C~KPSvL~KHIRsHT~~R 28 (28)
T d1bboa1 2 YIC--EECGIRAKKPSMLKKHIRTHTDVR 28 (28)
T ss_dssp CBC--TTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred ccc--cccCcccCCHHHHHHHHHHhcCCC
Confidence 667 778888888888888888888764
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=95.80 E-value=0.059 Score=48.24 Aligned_cols=115 Identities=11% Similarity=0.109 Sum_probs=72.6
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
++|-|.|| |.+|+.++-.|+..+ -+.+|.++++.+...... ..++.. -. ..........||..
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~-l~~el~L~D~~~~~~~g~--a~Dl~~---------~~-~~~~~~~~~~~~~~--- 64 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQ-TANELVLIDVFKEKAIGE--AMDINH---------GL-PFMGQMSLYAGDYS--- 64 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTT-CSSEEEEECCC---CCHH--HHHHTT---------SC-CCTTCEEEC--CGG---
T ss_pred CeEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeccCCcccee--eeeecc---------Cc-ccCCCeeEeeCcHH---
Confidence 46888897 999999999998874 567999999877543221 112211 11 12234444444322
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
.++++|+|+-+|+...- ..+..+.+..|+.-.+.+++...++. .+.++.+-|
T Consensus 65 ----------~~~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~-p~ai~ivvt 117 (142)
T d1y6ja1 65 ----------DVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVVS 117 (142)
T ss_dssp ----------GGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEECS
T ss_pred ----------HhCCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccC-CCceEEEec
Confidence 35789999999987653 34556788999999999999998875 455555544
|
| >d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Five-finger GLI1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.0026 Score=41.19 Aligned_cols=29 Identities=34% Similarity=0.747 Sum_probs=19.3
Q ss_pred cccccCCccC---ccccChhhHHHHHhhhcCC
Q psy11859 719 TFQCTYPECL---KFYAKMSHLKAHLRRHSGE 747 (851)
Q Consensus 719 ~~~C~~~~Cg---k~F~~~~~L~~H~~~H~ge 747 (851)
.|.|.|..|. +.|.....|..|+|+||||
T Consensus 2 ~y~C~W~~C~R~~~pf~a~YkLv~H~R~HTgE 33 (33)
T d2glia2 2 EFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 33 (33)
T ss_dssp CCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred CeEEECCCCCCCCCcchhHHHHHHHHhhcCCC
Confidence 4667666664 4467777777777777765
|
| >d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transcription factor IIIA, TFIIIA species: Xenopus laevis [TaxId: 8355]
Probab=95.69 E-value=0.002 Score=39.17 Aligned_cols=30 Identities=30% Similarity=0.636 Sum_probs=27.0
Q ss_pred CccccCccccCccccCchhHHHhhhhcCCC
Q psy11859 748 RSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777 (851)
Q Consensus 748 kp~~C~~~~C~k~F~~~~~L~~H~r~H~ge 777 (851)
+||.|....|.|.|.+-.+|.+|..+|+||
T Consensus 1 ~pfpc~~egc~kgf~tlhhltrhs~thtge 30 (30)
T d1tf3a2 1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 30 (30)
T ss_dssp CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred CCcCcccccccccchhhhhhhhhhccccCC
Confidence 589997667999999999999999999986
|
| >d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: GLI-Krueppel family member HKR3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.65 E-value=0.0028 Score=37.38 Aligned_cols=26 Identities=35% Similarity=0.584 Sum_probs=24.3
Q ss_pred ccCccccCccccCchhHHHhhhhcCCCC
Q psy11859 751 KCDWQDCKWQFSRSDELSRHRRSHFGIK 778 (851)
Q Consensus 751 ~C~~~~C~k~F~~~~~L~~H~r~H~gek 778 (851)
+|+ .|.+.|.++.-|+.|-|.|+||+
T Consensus 2 qcp--~c~k~f~skyylkvhnr~htgek 27 (27)
T d2dlqa4 2 ECP--TCHKKFLSKYYLKVHNRKHTGEK 27 (27)
T ss_dssp CCT--TTCCCCSSHHHHHHHHHHHSSCC
T ss_pred cCc--chHHHHHHhHhhhhccccccCCC
Confidence 587 89999999999999999999986
|
| >d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: XFIN, third domain species: Xenopus laevis [TaxId: 8355]
Probab=95.62 E-value=0.0023 Score=37.16 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=9.8
Q ss_pred CccCccccChhhHHHHHhhh
Q psy11859 725 PECLKFYAKMSHLKAHLRRH 744 (851)
Q Consensus 725 ~~Cgk~F~~~~~L~~H~~~H 744 (851)
..|.++|..++.|.+|+++|
T Consensus 4 glcersfveksalsrhqrvh 23 (26)
T d1znfa_ 4 GLCERSFVEKSALSRHQRVH 23 (26)
T ss_dssp SSSCCBCSSHHHHHHHGGGT
T ss_pred cchHHHHHHHHHHHHHHHhh
Confidence 34555555555555555444
|
| >d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transcription factor IIIA, TFIIIA species: Xenopus laevis [TaxId: 8355]
Probab=95.57 E-value=0.0034 Score=38.77 Aligned_cols=30 Identities=37% Similarity=0.834 Sum_probs=27.3
Q ss_pred ccccccCCccCccccChhhHHHHHhhhcCC
Q psy11859 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGE 747 (851)
Q Consensus 718 r~~~C~~~~Cgk~F~~~~~L~~H~~~H~ge 747 (851)
|.|.|+|+.|+..|...-.|..|.-.|+||
T Consensus 2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe 31 (31)
T d1tf3a1 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE 31 (31)
T ss_dssp CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence 678999999999999999999999999986
|
| >d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 64, ZFP68 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.53 E-value=0.0037 Score=37.34 Aligned_cols=26 Identities=38% Similarity=0.635 Sum_probs=13.5
Q ss_pred ccccccCCccCccccChhhHHHHHhhhc
Q psy11859 718 RTFQCTYPECLKFYAKMSHLKAHLRRHS 745 (851)
Q Consensus 718 r~~~C~~~~Cgk~F~~~~~L~~H~~~H~ 745 (851)
+||+| ..|...-...++|..|+++|+
T Consensus 2 kp~kc--k~cdyaaadsssl~kh~rihs 27 (28)
T d2dmda1 2 KPYKC--KTCDYAAADSSSLNKHLRIHS 27 (28)
T ss_dssp CSEEC--SSSCCEESSHHHHHHHHHHSC
T ss_pred CCccc--ccccchhcchhhHhhhhhccc
Confidence 45555 445555555555555555553
|
| >d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Plant C2H2 finger (QALGGH zinc finger) domain: SUPERMAN zinc finger domain species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.48 E-value=0.0022 Score=42.82 Aligned_cols=29 Identities=24% Similarity=0.615 Sum_probs=17.8
Q ss_pred ccccccCCccCccccChhhHHHHHhhhcCCC
Q psy11859 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGER 748 (851)
Q Consensus 718 r~~~C~~~~Cgk~F~~~~~L~~H~~~H~gek 748 (851)
+.|+| ..|++.|.+...|-.|++.|..++
T Consensus 4 r~~~C--~~C~k~F~s~qALGGH~~~Hr~~r 32 (37)
T d1njqa_ 4 RSYTC--SFCKREFRSAQALGGHMNVHRRDR 32 (37)
T ss_dssp SSEEC--TTTCCEESSHHHHHHHHHTTCCSC
T ss_pred CccCC--CCCCCccCCcccccchHhhhcchH
Confidence 45666 556666666666666666665443
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.47 E-value=0.047 Score=48.84 Aligned_cols=115 Identities=15% Similarity=0.075 Sum_probs=77.1
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|+|-|.|| |.+|+.++-.|+.++ -+.+|.++++.+... .....++.. -. ....+.....+|..
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~-l~~el~L~Di~~~~~--~g~~~Dl~~---------~~-~~~~~~~~~~~~~~--- 63 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKG-FAREMVLIDVDKKRA--EGDALDLIH---------GT-PFTRRANIYAGDYA--- 63 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSSHHHH--HHHHHHHHH---------HG-GGSCCCEEEECCGG---
T ss_pred CEEEEECc-CHHHHHHHHHHHhCC-CCCEEEEEecccccc--cchhccccc---------cc-cccccccccCCcHH---
Confidence 58999997 999999998888875 467899998764321 111111111 01 12234555555533
Q ss_pred CCCCHHHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 299 LGIKDSDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 299 lgls~~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
.++++|+|+=+|+...-. ..-.+.+..|+.-.+.+++...+.. .+.++.+-|
T Consensus 64 ----------~~~~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~-p~aivivvt 116 (140)
T d1a5za1 64 ----------DLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVT 116 (140)
T ss_dssp ----------GGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECS
T ss_pred ----------HhcCCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcC-CCcEEEEeC
Confidence 247899999999976543 4456778889999999999998875 566666655
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=95.38 E-value=0.13 Score=45.83 Aligned_cols=116 Identities=13% Similarity=0.048 Sum_probs=75.3
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEE-EcCCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHII-EGDILQA 297 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v-~gDi~~~ 297 (851)
|+|.|+|| |.+|+.++..|+..+ -+.+|.++++.+...... ..++.....+ ...+..+. .+|..
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~-l~~el~L~Di~~~~~~~~--~~d~~~~~~~---------~~~~~~i~~~~~~~-- 65 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQ-LARELVLLDVVEGIPQGK--ALDMYESGPV---------GLFDTKVTGSNDYA-- 65 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CCSEEEEECSSSSHHHHH--HHHHHTTHHH---------HTCCCEEEEESCGG--
T ss_pred CEEEEECc-CHHHHHHHHHHHhCC-CCceEEEeccccccchhh--hhhhhcccch---------hcccceEEecCCHH--
Confidence 57999996 999999999888774 457999999876432111 1122111111 11133332 23322
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
.++++|+|+=+|+...- ...-.+....|+.-.+.+++...+.. .+.++.+-|
T Consensus 66 -----------~~~dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~-p~aivivvt 118 (142)
T d1guza1 66 -----------DTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVS 118 (142)
T ss_dssp -----------GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECC
T ss_pred -----------HhcCCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccC-CCeEEEEec
Confidence 35789999999997543 34456788899999999998888775 556665555
|
| >d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Enhancer binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.0027 Score=38.49 Aligned_cols=23 Identities=4% Similarity=-0.105 Sum_probs=15.5
Q ss_pred ceeecCCccccchhhhhhhcccc
Q psy11859 691 IFTQILPAYLVDFIMVLIRQKTF 713 (851)
Q Consensus 691 ~~~c~~c~~~~~~~~~l~~h~~~ 713 (851)
||.|..|.++|.++.+|..||+.
T Consensus 1 py~C~~CnF~FKTKGNLTKHmkS 23 (29)
T d1bboa2 1 PYHCTYCNFSFKTKGNLTKHMKS 23 (29)
T ss_dssp CEECSSSSCEESSHHHHHHHHHS
T ss_pred CcccceeeeeEeeccchhHhhhh
Confidence 56677777777777777777654
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=95.30 E-value=0.032 Score=50.81 Aligned_cols=119 Identities=13% Similarity=0.068 Sum_probs=74.4
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQ 296 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~ 296 (851)
+.++|-|.|| |.+|+.++-.|...+ +.+|++++..+... .....++.... ............+
T Consensus 6 k~~KI~IIGa-G~VG~~lA~~l~~~~--~~el~L~D~~~~~~--~g~a~Dl~~~~---------~~~~~~~~~~~~~--- 68 (154)
T d1pzga1 6 RRKKVAMIGS-GMIGGTMGYLCALRE--LADVVLYDVVKGMP--EGKALDLSHVT---------SVVDTNVSVRAEY--- 68 (154)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHT--CCEEEEECSSSSHH--HHHHHHHHHHH---------HHTTCCCCEEEEC---
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCC--CceEEEEEeccccc--hhHHHHHhhhc---------cccCCeeEEeccC---
Confidence 4578999998 999999988777664 46888888765321 11111111100 0000011111111
Q ss_pred CcCCCCHHHHHHHhcCccEEEEccccCCcch------hHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 297 ANLGIKDSDLLMLQEEVSVVFNGAASLKLEA------ELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 297 ~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~------~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
+.+..+++.|+|+=+|+...... +-.+....|+.-.+.+++...++. .+.++.+-|
T Consensus 69 --------~~~~~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~-p~aiviivs 130 (154)
T d1pzga1 69 --------SYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVT 130 (154)
T ss_dssp --------SHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECC
T ss_pred --------chhhhhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcC-CCcEEEEeC
Confidence 34456689999999998765432 334678899999999999998885 566666665
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=95.22 E-value=0.011 Score=55.25 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=31.5
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGL 258 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~ 258 (851)
++|.|.||||++|..|++-|.+. |++.-+.+..+...+.
T Consensus 2 ikVaIvGATGyvG~eLirlL~~H-P~~ei~~l~s~~~aG~ 40 (176)
T d1vkna1 2 IRAGIIGATGYTGLELVRLLKNH-PEAKITYLSSRTYAGK 40 (176)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHC-TTEEEEEEECSTTTTS
T ss_pred eEEEEECCCcHHHHHHHHHHHhC-CCceEEEeeccccCCC
Confidence 58999999999999999977765 8887666666666554
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.19 E-value=0.014 Score=52.71 Aligned_cols=34 Identities=29% Similarity=0.359 Sum_probs=26.4
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhC-CCccEEEEEe
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSC-PDIGKVYILC 252 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g-~~v~~V~~l~ 252 (851)
.++|.|-||||++|..|++-|.+.. |.+ +|..+.
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~-~l~~~~ 36 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLH-RLHLLA 36 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCS-CEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCce-EEEEEe
Confidence 4789999999999999999887543 554 555554
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.19 E-value=0.094 Score=46.86 Aligned_cols=116 Identities=11% Similarity=0.039 Sum_probs=74.8
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEE-EcCCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHII-EGDILQA 297 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v-~gDi~~~ 297 (851)
|+|-|.|| |.+|+.++-.|+.++ -+.+|.++++.+... .....++. .-.+.......+. .+|..
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~-~~~elvL~Di~~~~~--~g~alDl~---------~~~~~~~~~~~i~~~~d~~-- 65 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNL-DVDEIALVDIAEDLA--VGEAMDLA---------HAAAGIDKYPKIVGGADYS-- 65 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHS-CCSEEEEECSSHHHH--HHHHHHHH---------HHHHTTTCCCEEEEESCGG--
T ss_pred CEEEEECc-CHHHHHHHHHHHhcC-cCceEEEEecccchh--hHHHHHHh---------hhccccCCCCccccCCCHH--
Confidence 68999997 999999999888774 668899998754221 11111111 0001111122222 33432
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
.+.+.|+|+=.|+..+- ..+..+....|+.-.+.+.+...+.. .+.++.+-|
T Consensus 66 -----------~~~~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-p~aivivvt 118 (142)
T d1ojua1 66 -----------LLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVT 118 (142)
T ss_dssp -----------GGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECS
T ss_pred -----------HhccccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhC-CCcEEEEec
Confidence 35789999999986544 34556788889999999999988875 566666665
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=95.07 E-value=0.064 Score=48.99 Aligned_cols=121 Identities=13% Similarity=0.104 Sum_probs=78.1
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcC
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGD 293 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gD 293 (851)
.....++|-|.|+ |.+|+.++-.|+..+ -+.+|.++++.+... .....++.....| .......-.+|
T Consensus 16 ~~~~~~KV~IIGa-G~VG~~~A~~l~~~~-l~~ElvLiD~~~~~a--~g~alDl~h~~~~---------~~~~~~~~~~d 82 (160)
T d1i0za1 16 ATVPNNKITVVGV-GQVGMACAISILGKS-LADELALVDVLEDKL--KGEMMDLQHGSLF---------LQTPKIVADKD 82 (160)
T ss_dssp CCCCSSEEEEECC-SHHHHHHHHHHHHTT-CCSEEEEECSCHHHH--HHHHHHHHHTGGG---------CCCSEEEECSS
T ss_pred ccCCCCeEEEECC-CHHHHHHHHHHHhcC-CCcEEEEEEeccchh--HHHHHHHhccccc---------cCCCeEEeccc
Confidence 3455679999996 999999999999885 557899998864321 1111222211111 11233333444
Q ss_pred CCCCcCCCCHHHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 294 ILQANLGIKDSDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 294 i~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
.. .+.+.|+|+.+|+...-+ .+..+..+.|+.-.+.++....+.. .+.++.+=|
T Consensus 83 ~~-------------~~~~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~-p~aiiivvt 137 (160)
T d1i0za1 83 YS-------------VTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYS-PDCIIIVVS 137 (160)
T ss_dssp GG-------------GGTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECS
T ss_pred hh-------------hcccccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEeC
Confidence 43 247899999999976543 3445778889999999999888875 444444433
|
| >d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: XFIN, third domain species: Xenopus laevis [TaxId: 8355]
Probab=95.02 E-value=0.0074 Score=34.98 Aligned_cols=24 Identities=42% Similarity=0.819 Sum_probs=22.1
Q ss_pred cccCccccCccccCchhHHHhhhhcC
Q psy11859 750 FKCDWQDCKWQFSRSDELSRHRRSHF 775 (851)
Q Consensus 750 ~~C~~~~C~k~F~~~~~L~~H~r~H~ 775 (851)
|+|. .|.++|..++.|.+|+|.|.
T Consensus 1 ykcg--lcersfveksalsrhqrvhk 24 (26)
T d1znfa_ 1 YKCG--LCERSFVEKSALSRHQRVHK 24 (26)
T ss_dssp CBCS--SSCCBCSSHHHHHHHGGGTC
T ss_pred Cccc--chHHHHHHHHHHHHHHHhhc
Confidence 6897 89999999999999999985
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=94.93 E-value=0.13 Score=45.98 Aligned_cols=115 Identities=16% Similarity=0.099 Sum_probs=75.4
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEE-EcCCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHII-EGDILQA 297 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v-~gDi~~~ 297 (851)
.+|.|.|| |.+|+.++-.|+.++ -+.+|.++++.+... .....++.... .+.....+. .+|..
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~-l~~ElvL~D~~~~~~--~g~a~Dl~~a~----------~~~~~~~i~~~~~~~-- 65 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRG-IAREIVLEDIAKERV--EAEVLDMQHGS----------SFYPTVSIDGSDDPE-- 65 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CCSEEEEECSSHHHH--HHHHHHHHHTG----------GGSTTCEEEEESCGG--
T ss_pred CEEEEECC-CHHHHHHHHHHHhcC-CCcEEEEEEeccccc--hhHHHHHHhcc----------ccCCCceeecCCCHH--
Confidence 47899997 999999999998875 457899988765321 11111222111 111223333 23322
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
.+.+.|+|+-+|+..+-+ .+..+.+..|+.-.+.++....+.. .+.++.+-|
T Consensus 66 -----------~~~daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~-p~ai~ivvt 118 (143)
T d1llda1 66 -----------ICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVA-PNAIYMLIT 118 (143)
T ss_dssp -----------GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECC
T ss_pred -----------HhhCCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhC-CCeEEEEeC
Confidence 246899999999986543 4556889999999999999888875 555555444
|
| >d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Plant C2H2 finger (QALGGH zinc finger) domain: SUPERMAN zinc finger domain species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.85 E-value=0.0071 Score=40.25 Aligned_cols=30 Identities=10% Similarity=-0.173 Sum_probs=19.8
Q ss_pred ccceeecCCccccchhhhhhhcccccCCcc
Q psy11859 689 FVIFTQILPAYLVDFIMVLIRQKTFENLVR 718 (851)
Q Consensus 689 ~~~~~c~~c~~~~~~~~~l~~h~~~h~~~r 718 (851)
.+.|.|..|++.|.+-+.|.-||+.|..++
T Consensus 3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r 32 (37)
T d1njqa_ 3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR 32 (37)
T ss_dssp SSSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred CCccCCCCCCCccCCcccccchHhhhcchH
Confidence 345667777777777777777777776554
|
| >d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 64, ZFP68 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.84 E-value=0.0066 Score=36.23 Aligned_cols=26 Identities=31% Similarity=0.746 Sum_probs=24.4
Q ss_pred CccccCccccCccccCchhHHHhhhhcC
Q psy11859 748 RSFKCDWQDCKWQFSRSDELSRHRRSHF 775 (851)
Q Consensus 748 kp~~C~~~~C~k~F~~~~~L~~H~r~H~ 775 (851)
+||+|. .|...-..+++|..|+|+|.
T Consensus 2 kp~kck--~cdyaaadsssl~kh~rihs 27 (28)
T d2dmda1 2 KPYKCK--TCDYAAADSSSLNKHLRIHS 27 (28)
T ss_dssp CSEECS--SSCCEESSHHHHHHHHHHSC
T ss_pred CCcccc--cccchhcchhhHhhhhhccc
Confidence 799998 89999999999999999996
|
| >d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: GLI-Krueppel family member HKR3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.81 E-value=0.0035 Score=37.91 Aligned_cols=28 Identities=29% Similarity=0.735 Sum_probs=17.5
Q ss_pred ccccccCCccCccccChhhHHHHHhhhcCC
Q psy11859 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGE 747 (851)
Q Consensus 718 r~~~C~~~~Cgk~F~~~~~L~~H~~~H~ge 747 (851)
..|.| ..|...|...-.|..|+..|+||
T Consensus 3 qvftc--s~cqe~f~rrmelr~hmvshtge 30 (30)
T d2dlqa3 3 QVFTC--SVCQETFRRRMELRLHMVSHTGE 30 (30)
T ss_dssp CCEEC--SSSCCEESSHHHHHHHHHHHSSS
T ss_pred ceEEe--HHHHHHHHHHHhheeeeecccCC
Confidence 44566 55666666666666666666654
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.73 E-value=0.013 Score=54.98 Aligned_cols=34 Identities=29% Similarity=0.358 Sum_probs=31.1
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK 255 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~ 255 (851)
|+|.|+||+|.+|+.|++.|++.| ++|.+..|..
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G---~~V~l~~R~~ 34 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLG---HEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT---CEEEEEESSH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCC---CEEEEEECCH
Confidence 689999999999999999999999 7899999964
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=94.60 E-value=0.13 Score=45.93 Aligned_cols=115 Identities=12% Similarity=0.151 Sum_probs=69.4
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEE-EcCCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHII-EGDILQA 297 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v-~gDi~~~ 297 (851)
++|-|.|+ |.+|+.++-.|+..+ +..+.+++..+... .....++.....+. .....+. .+|..
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~--l~dl~l~D~~~~~~--~~~~~Dl~~~~~~~---------~~~~~i~~~~d~~-- 65 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKE--LGDIVLLDIVEGVP--QGKALDLYEASPIE---------GFDVRVTGTNNYA-- 65 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHT--CSEEEEECSSSSHH--HHHHHHHHTTHHHH---------TCCCCEEEESCGG--
T ss_pred CeEEEECC-CHHHHHHHHHHHhCC--cceEEEEeeccccc--hhHHHHhhcccccc---------CCCCEEEecCcHH--
Confidence 57999996 999999998888764 46788888765321 11112222211111 0122222 33433
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCc-chhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKL-EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~-~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
.+++.|+|+=+|+...- ..+..+.+..|+.-.+.+++...+.. .+.++.+-|
T Consensus 66 -----------~~~~advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~-p~aivivvt 118 (142)
T d1uxja1 66 -----------DTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVN 118 (142)
T ss_dssp -----------GGTTCSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGC-TTCEEEECS
T ss_pred -----------HhcCCCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccC-CCceEEEeC
Confidence 24689999999997643 34555778899999999999998864 566666655
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=94.53 E-value=0.017 Score=52.28 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=28.1
Q ss_pred CEEEEecCccHHHHHHHHHHHHhC-CCccEEEEEecCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSC-PDIGKVYILCRAK 255 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g-~~v~~V~~l~R~~ 255 (851)
|+|.|.||||++|..|++.|++.. ..+..+..+..+.
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~ 38 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ 38 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSC
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccc
Confidence 689999999999999999998742 2345676665443
|
| >d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transcription factor IIIA, TFIIIA species: Xenopus laevis [TaxId: 8355]
Probab=94.45 E-value=0.0096 Score=35.24 Aligned_cols=26 Identities=31% Similarity=0.677 Sum_probs=22.3
Q ss_pred ccccCCccCccccChhhHHHHHhhhc
Q psy11859 720 FQCTYPECLKFYAKMSHLKAHLRRHS 745 (851)
Q Consensus 720 ~~C~~~~Cgk~F~~~~~L~~H~~~H~ 745 (851)
|.|.++.|++.|.....|+.|+-+|+
T Consensus 2 yvchfe~c~kafkkhnqlkvhqf~ht 27 (28)
T d2j7ja1 2 YVCHFENCGKAFKKHNQLKVHQFSHT 27 (28)
T ss_dssp EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred eEEEecCchHHHhhccceEEEeeccc
Confidence 67888889999999899999988876
|
| >d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: GLI-Krueppel family member HKR3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.20 E-value=0.014 Score=35.18 Aligned_cols=26 Identities=15% Similarity=-0.095 Sum_probs=14.8
Q ss_pred ceeecCCccccchhhhhhhcccccCC
Q psy11859 691 IFTQILPAYLVDFIMVLIRQKTFENL 716 (851)
Q Consensus 691 ~~~c~~c~~~~~~~~~l~~h~~~h~~ 716 (851)
.|+|..|...|..+..|+.||-.|+|
T Consensus 4 vftcs~cqe~f~rrmelr~hmvshtg 29 (30)
T d2dlqa3 4 VFTCSVCQETFRRRMELRLHMVSHTG 29 (30)
T ss_dssp CEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred eEEeHHHHHHHHHHHhheeeeecccC
Confidence 45555555555555555555555554
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=94.18 E-value=0.054 Score=50.69 Aligned_cols=85 Identities=11% Similarity=0.169 Sum_probs=57.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
+++++|+|.|+ |-.|+.++..|++.+. ..|++..|..... +++..+ .+++.... .......|+.
T Consensus 16 l~~k~vlIlGa-GGaarai~~al~~~g~--~~i~i~nR~~~~~---~~~~~l-----~~~~~~~~-----~~~~~~~~~~ 79 (182)
T d1vi2a1 16 IKGKTMVLLGA-GGASTAIGAQGAIEGL--KEIKLFNRRDEFF---DKALAF-----AQRVNENT-----DCVVTVTDLA 79 (182)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTC--SEEEEEECSSTTH---HHHHHH-----HHHHHHHS-----SCEEEEEETT
T ss_pred cCCCEEEEECC-cHHHHHHHHHHhhcCC--ceEeeeccchHHH---HHHHHH-----HHHHHhhc-----CcceEeeecc
Confidence 57899999999 4568999999998764 8999999986542 222221 11121111 2334466777
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEcccc
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAAS 322 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~ 322 (851)
+.. ++......+|+||++...
T Consensus 80 ~~~------~~~~~~~~~diiIN~Tp~ 100 (182)
T d1vi2a1 80 DQQ------AFAEALASADILTNGTKV 100 (182)
T ss_dssp CHH------HHHHHHHTCSEEEECSST
T ss_pred ccc------chhhhhcccceeccccCC
Confidence 654 667777899999999754
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=94.14 E-value=0.01 Score=56.09 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=31.2
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGL 258 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~ 258 (851)
..+|.|.||||++|..|++-|.+. |.+.-+.+..+...+.
T Consensus 5 kikVaIlGATGyvG~elirLL~~H-P~~ei~~l~S~~~aG~ 44 (183)
T d2cvoa1 5 EVRIAVLGASGYTGAEIVRLLANH-PQFRIKVMTADRKAGE 44 (183)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTC-SSEEEEEEECSTTTTS
T ss_pred ccEEEEECcccHHHHHHHHHHHhC-CCceEEEEeccccCCC
Confidence 347999999999999999988876 8876555555555554
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=94.11 E-value=0.065 Score=47.13 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=49.6
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCc
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQAN 298 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~ 298 (851)
|++.|.|+ |-+|+.+++.|.+.| ..|++++... ++++++ +. .....+.||.++++
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g---~~vvvid~d~------~~~~~~---------~~------~~~~~~~gd~~~~~ 55 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMG---HEVLAVDINE------EKVNAY---------AS------YATHAVIANATEEN 55 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTT---CCCEEEESCH------HHHHHT---------TT------TCSEEEECCTTCTT
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC---CeEEEecCcH------HHHHHH---------HH------hCCcceeeecccch
Confidence 46778876 899999999999998 5677776643 233222 11 13457889999987
Q ss_pred CCCCHHHHHHH-hcCccEEEEccc
Q psy11859 299 LGIKDSDLLML-QEEVSVVFNGAA 321 (851)
Q Consensus 299 lgls~~~~~~~-~~~vd~ViH~AA 321 (851)
.+..+ ++++|.||=+..
T Consensus 56 ------~l~~a~i~~a~~vi~~~~ 73 (134)
T d2hmva1 56 ------ELLSLGIRNFEYVIVAIG 73 (134)
T ss_dssp ------HHHHHTGGGCSEEEECCC
T ss_pred ------hhhccCCccccEEEEEcC
Confidence 55554 678888775443
|
| >d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 297b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.97 E-value=0.012 Score=39.21 Aligned_cols=26 Identities=27% Similarity=0.677 Sum_probs=21.0
Q ss_pred cCCCccccCccccCccccCchhHHHhhh
Q psy11859 745 SGERSFKCDWQDCKWQFSRSDELSRHRR 772 (851)
Q Consensus 745 ~gekp~~C~~~~C~k~F~~~~~L~~H~r 772 (851)
+|-|||.|. .|+|.|.+..++.+|..
T Consensus 1 TGiKPYeC~--~C~KrFMWRDSF~RH~~ 26 (44)
T d2csha2 1 TGIKPYECN--ICAKRFMWRDSFHRHVT 26 (44)
T ss_dssp CCCCCEECS--SSCCEESCHHHHHHHHH
T ss_pred CCCCceecc--chhhhhhhHHHHHHhhh
Confidence 467888887 78888888888888864
|
| >d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: ZFY species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.96 E-value=0.021 Score=34.72 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=11.0
Q ss_pred cccccCCccCccccChhhHHHHHh
Q psy11859 719 TFQCTYPECLKFYAKMSHLKAHLR 742 (851)
Q Consensus 719 ~~~C~~~~Cgk~F~~~~~L~~H~~ 742 (851)
||+| +.|.......++|+.|++
T Consensus 2 py~c--qyc~yrsadssnlkthik 23 (30)
T d1klra_ 2 TYQC--QYCEFRSADSSNLKTHIK 23 (30)
T ss_dssp CCCC--SSSSCCCSCSHHHHHHHH
T ss_pred Cccc--cccccccccchhhhhhhh
Confidence 4555 445555555555555544
|
| >d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 64, ZFP68 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.72 E-value=0.012 Score=35.23 Aligned_cols=25 Identities=8% Similarity=-0.180 Sum_probs=17.8
Q ss_pred ceeecCCccccchhhhhhhcccccC
Q psy11859 691 IFTQILPAYLVDFIMVLIRQKTFEN 715 (851)
Q Consensus 691 ~~~c~~c~~~~~~~~~l~~h~~~h~ 715 (851)
|-+|..|+++++++..|+.|.++|.
T Consensus 2 pekc~ecsyscsskaalrvh~rihc 26 (28)
T d1x5wa1 2 PEKCSECSYSCSSKAALRIHERIHC 26 (28)
T ss_dssp SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred CccCcccccccCcHHHHHHhhcccc
Confidence 3467777777777777777777774
|
| >d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Five-finger GLI1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.63 E-value=0.014 Score=37.66 Aligned_cols=29 Identities=34% Similarity=0.689 Sum_probs=24.3
Q ss_pred ccccCccccC---ccccCchhHHHhhhhcCCC
Q psy11859 749 SFKCDWQDCK---WQFSRSDELSRHRRSHFGI 777 (851)
Q Consensus 749 p~~C~~~~C~---k~F~~~~~L~~H~r~H~ge 777 (851)
.|.|.+..|. +.|.....|..|+|+||||
T Consensus 2 ~y~C~W~~C~R~~~pf~a~YkLv~H~R~HTgE 33 (33)
T d2glia2 2 EFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 33 (33)
T ss_dssp CCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred CeEEECCCCCCCCCcchhHHHHHHHHhhcCCC
Confidence 4778776786 4699999999999999986
|
| >d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: ZFY species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.42 E-value=0.029 Score=34.11 Aligned_cols=26 Identities=19% Similarity=0.667 Sum_probs=22.8
Q ss_pred CccccCccccCccccCchhHHHhhhhcC
Q psy11859 748 RSFKCDWQDCKWQFSRSDELSRHRRSHF 775 (851)
Q Consensus 748 kp~~C~~~~C~k~F~~~~~L~~H~r~H~ 775 (851)
+||.|. .|......+++|+.|.++-+
T Consensus 1 kpy~cq--yc~yrsadssnlkthiktkh 26 (30)
T d1klra_ 1 KTYQCQ--YCEFRSADSSNLKTHIKTKH 26 (30)
T ss_dssp CCCCCS--SSSCCCSCSHHHHHHHHHHT
T ss_pred CCcccc--ccccccccchhhhhhhhccc
Confidence 689997 89999999999999988643
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.09 E-value=0.091 Score=47.88 Aligned_cols=119 Identities=9% Similarity=-0.002 Sum_probs=73.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
.+..+|.|.|| |.+|+.++..|+..+ -+.+|.++++.+.. ......++... ............+|..
T Consensus 17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~-l~~elvL~D~~~~~--a~g~alDl~~~---------~~~~~~~~~~~~~d~~ 83 (159)
T d2ldxa1 17 LSRCKITVVGV-GDVGMACAISILLKG-LADELALVDADTDK--LRGEALDLQHG---------SLFLSTPKIVFGKDYN 83 (159)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHTTT-SCSEEEEECSCHHH--HHHHHHHHHHT---------TTTCSCCEEEEESSGG
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeCCchh--hhccHHHHhCc---------chhcCCCeEEeccchh
Confidence 34457999996 999999999888874 45789999876422 11111122111 1111123333344433
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKLE-AELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~-~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
.+.+.|+|+-+|+...-+ .+..+.++.|+.-.+.++....+.+ .+.++.+=|
T Consensus 84 -------------~~~~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~-p~~ivivvt 136 (159)
T d2ldxa1 84 -------------VSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNS-PDCKIIVVT 136 (159)
T ss_dssp -------------GGTTEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHS-TTCEEEECS
T ss_pred -------------hhccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccC-CCeEEEEeC
Confidence 236899999999876543 3334668889999999988887765 444444433
|
| >d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transactivation domain of cre-bp1/atf-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.94 E-value=0.023 Score=37.46 Aligned_cols=30 Identities=27% Similarity=0.628 Sum_probs=25.8
Q ss_pred CCCccccCccccCccccCchhHHHhhhhcC
Q psy11859 746 GERSFKCDWQDCKWQFSRSDELSRHRRSHF 775 (851)
Q Consensus 746 gekp~~C~~~~C~k~F~~~~~L~~H~r~H~ 775 (851)
.+|||.|...-|+.+|.+...|..|...|.
T Consensus 3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~ 32 (38)
T d1bhia_ 3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32 (38)
T ss_dssp TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred CCCceecCCCCccccccchHHHHHhhhhhe
Confidence 489999965589999999999999988774
|
| >d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: ADR1 species: Synthetic, based on Saccharomyces cerevisiae sequence
Probab=92.83 E-value=0.02 Score=35.56 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=14.7
Q ss_pred cccccCCccCccccChhhHHHHHh-hhc
Q psy11859 719 TFQCTYPECLKFYAKMSHLKAHLR-RHS 745 (851)
Q Consensus 719 ~~~C~~~~Cgk~F~~~~~L~~H~~-~H~ 745 (851)
||.| ..|++.|..+.-|.+|++ .|.
T Consensus 1 Pf~C--~~C~R~FaRrDLlLRH~qKlH~ 26 (31)
T d2adra2 1 PYPC--GLCNRAFTRRDLLIRHAQKIHS 26 (31)
T ss_dssp SEEC--TTTCCEESSHHHHHHHHTTTSC
T ss_pred Cccc--ccccchhhHHHHHHHHHHHHhc
Confidence 5666 556666666666666653 344
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=92.75 E-value=0.062 Score=49.67 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=31.7
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKR 256 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~ 256 (851)
-.|++|||+||+|=+|...++-+...| .+|++.+++..
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~G---~~vi~~~~~~~ 63 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAMG---LRVLAAASRPE 63 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTT---CEEEEEESSGG
T ss_pred CCCCEEEEEeccccchhhhhhhhcccc---ccccccccccc
Confidence 468899999999999999998777777 67888887643
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=92.67 E-value=0.13 Score=46.15 Aligned_cols=38 Identities=32% Similarity=0.371 Sum_probs=30.9
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKR 256 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~ 256 (851)
.|+|.|-|+||.||+..++-+-+ .|+-.+|++|.-.++
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~-~~d~f~v~~lsa~~N 39 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIER-NLDRYQVIALTANRN 39 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHH-TGGGEEEEEEEESSC
T ss_pred CcEEEEECCCcHHHHHHHHHHHc-CCCCcEEEEEEeCCC
Confidence 58999999999999999987655 466678888876554
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=92.54 E-value=0.084 Score=51.80 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=70.6
Q ss_pred hhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHH-----HHhc---ChhhHHHhhhCcccC
Q psy11859 213 ARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLA-----EFSK---LPVFERLRKECPAQL 284 (851)
Q Consensus 213 ~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~-----~~~~---~~~f~~l~~~~~~~~ 284 (851)
++-+++++|+|.|++| +|++++..|.+.| |.+|.+++...-..+-..|.- ++-. ...-++|++.+|+.
T Consensus 25 Q~kL~~~~VliiG~Gg-lGs~va~~La~~G--vg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~- 100 (247)
T d1jw9b_ 25 QEALKDSRVLIVGLGG-LGCAASQYLASAG--VGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHI- 100 (247)
T ss_dssp HHHHHHCEEEEECCSH-HHHHHHHHHHHHT--CSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTS-
T ss_pred HHHHhCCCEEEECCCH-HHHHHHHHHHHcC--CCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhccc-
Confidence 3446788999999766 9999999999987 589999886543322222210 0000 01122344444433
Q ss_pred CCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeee
Q psy11859 285 SRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTA 362 (851)
Q Consensus 285 ~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa 362 (851)
+++.+...+.. ..........|+|+-+... ......+-++|.+.+ ..||+.+..
T Consensus 101 -~i~~~~~~~~~-------~~~~~~~~~~divid~~d~--------------~~~~~~in~~~~~~~--ip~i~g~~~ 154 (247)
T d1jw9b_ 101 -AITPVNALLDD-------AELAALIAEHDLVLDCTDN--------------VAVRNQLNAGCFAAK--VPLVSGAAI 154 (247)
T ss_dssp -EEEEECSCCCH-------HHHHHHHHTSSEEEECCSS--------------HHHHHHHHHHHHHHT--CCEEEEEEE
T ss_pred -chhhhhhhhhh-------ccccccccccceeeeccch--------------hhhhhhHHHHHHHhC--CCccccccc
Confidence 45555444443 3556667889999976532 112223455676665 356765553
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.54 E-value=0.061 Score=49.76 Aligned_cols=37 Identities=27% Similarity=0.205 Sum_probs=30.9
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK 255 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~ 255 (851)
-.|.+|||+||+|-+|...++-+...| .+|++++++.
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G---~~vi~~~~~~ 63 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYG---LKILGTAGTE 63 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESSH
T ss_pred CCCCEEEEEeccccccccccccccccC---cccccccccc
Confidence 468899999999999999998777776 6788888753
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=92.46 E-value=0.071 Score=49.37 Aligned_cols=38 Identities=11% Similarity=0.022 Sum_probs=32.5
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKR 256 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~ 256 (851)
-.|.+|||+||+|-+|..+++-....| .+|++.+++..
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~G---a~Vi~~~~s~~ 64 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKALG---AKLIGTVGTAQ 64 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHT---CEEEEEESSHH
T ss_pred CCCCEEEEEccccccchHHHHHHHHhC---CeEeecccchH
Confidence 357899999999999999999888877 68999888753
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=92.10 E-value=0.48 Score=42.39 Aligned_cols=115 Identities=18% Similarity=0.192 Sum_probs=72.0
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEE-cCCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIE-GDILQA 297 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~-gDi~~~ 297 (851)
.+|-|.|| |.+|+.++..|+.. .+.++.++++.+.. +.....++.....+. ..+..+.. +|.
T Consensus 4 ~KI~IIGa-G~VG~~~a~~l~~~--~l~el~L~Di~~~~--~~g~a~Dl~~~~~~~---------~~~~~v~~~~~~--- 66 (150)
T d1t2da1 4 AKIVLVGS-GMIGGVMATLIVQK--NLGDVVLFDIVKNM--PHGKALDTSHTNVMA---------YSNCKVSGSNTY--- 66 (150)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHT--TCCEEEEECSSSSH--HHHHHHHHHTHHHHH---------TCCCCEEEECCG---
T ss_pred CeEEEECC-CHHHHHHHHHHHhC--CCCeEEEEeccCCc--ceeeecchhhhcccc---------CCCcEEEecccc---
Confidence 57999996 99999999766654 36889999886532 111111222111111 11222322 222
Q ss_pred cCCCCHHHHHHHhcCccEEEEccccCCcch------hHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 298 NLGIKDSDLLMLQEEVSVVFNGAASLKLEA------ELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 298 ~lgls~~~~~~~~~~vd~ViH~AA~~~~~~------~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
..+.+.|+|+=+|+...... .-.+....|+.-.+.+++..++.. .+.++.+-|
T Consensus 67 ----------~~~~~advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~-p~aivivvt 125 (150)
T d1t2da1 67 ----------DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVT 125 (150)
T ss_dssp ----------GGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECS
T ss_pred ----------cccCCCcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcC-CCeEEEEec
Confidence 23478999999999765421 134668899999999999998875 566666655
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=91.96 E-value=0.15 Score=46.41 Aligned_cols=77 Identities=22% Similarity=0.214 Sum_probs=53.1
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
-+++++|||.|+ |=+|+.+++.|...|. ..|.+..|.... .+.+.. +. .... .++
T Consensus 21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~--~~i~v~nRt~~k---a~~l~~------------~~-----~~~~--~~~ 75 (159)
T d1gpja2 21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGV--RAVLVANRTYER---AVELAR------------DL-----GGEA--VRF 75 (159)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCC--SEEEEECSSHHH---HHHHHH------------HH-----TCEE--CCG
T ss_pred CcccCeEEEECC-CHHHHHHHHHHHhcCC--cEEEEEcCcHHH---HHHHHH------------hh-----hccc--ccc
Confidence 368999999998 9999999999999874 689999887422 111111 10 1111 122
Q ss_pred CCCcCCCCHHHHHHHhcCccEEEEccccCCc
Q psy11859 295 LQANLGIKDSDLLMLQEEVSVVFNGAASLKL 325 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~ 325 (851)
. ++...+.++|+||.+.+...+
T Consensus 76 ~---------~~~~~l~~~Divi~atss~~~ 97 (159)
T d1gpja2 76 D---------ELVDHLARSDVVVSATAAPHP 97 (159)
T ss_dssp G---------GHHHHHHTCSEEEECCSSSSC
T ss_pred h---------hHHHHhccCCEEEEecCCCCc
Confidence 2 666778899999999886543
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.86 E-value=0.047 Score=58.31 Aligned_cols=99 Identities=17% Similarity=0.162 Sum_probs=65.2
Q ss_pred cchhhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH-----HHHh---cChhhHHHhhhCc
Q psy11859 210 GDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-----AEFS---KLPVFERLRKECP 281 (851)
Q Consensus 210 ~~i~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl-----~~~~---~~~~f~~l~~~~~ 281 (851)
..++.-+++++|||.|++| ||++++..|+..| |..|.+++...=..+-..|. .++- ....-+++++.+|
T Consensus 29 e~~~~~l~~~kVlvvG~Gg-lG~ei~k~L~~~G--vg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np 105 (426)
T d1yovb1 29 ESLQFLLDTCKVLVIGAGG-LGCELLKNLALSG--FRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVP 105 (426)
T ss_dssp SHHHHHHHHCCEEEECSST-THHHHHHHHHTTT--CCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHST
T ss_pred HHHHHHHhcCeEEEECCCH-HHHHHHHHHHHcC--CCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCC
Confidence 3455557888999999988 9999999999876 57888888754322211110 0111 1123345555566
Q ss_pred ccCCCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccc
Q psy11859 282 AQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA 321 (851)
Q Consensus 282 ~~~~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA 321 (851)
+. +|+.+..++.+.+ ...+++.|+||-+.-
T Consensus 106 ~v--~i~~~~~~i~~~~--------~~~~~~~DlVi~~~D 135 (426)
T d1yovb1 106 NC--NVVPHFNKIQDFN--------DTFYRQFHIIVCGLD 135 (426)
T ss_dssp TC--CCEEECSCGGGBC--------HHHHTTCSEEEECCS
T ss_pred CC--ceEeeeccccchH--------HHHHHhcchheeccC
Confidence 54 7888888887754 246789999997653
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=91.82 E-value=0.2 Score=45.02 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=30.1
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKR 256 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~ 256 (851)
|+|.|-|+||.||+..++-+-+ .|+-.+|++|.-.++
T Consensus 2 K~I~IlGsTGSIG~~tL~Vi~~-~~d~f~v~~Lsa~~N 38 (151)
T d1q0qa2 2 KQLTILGSTGSIGCSTLDVVRH-NPEHFRVVALVAGKN 38 (151)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH-CTTTEEEEEEEESSC
T ss_pred CeEEEEcCCcHHHHHHHHHHHh-CCCCcEEEEEEecCc
Confidence 6799999999999999987755 476678888876544
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.01 E-value=0.066 Score=49.78 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=31.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK 255 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~ 255 (851)
-+|.+|||+||+|-+|...++-+...| .+|++.+++.
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~g---~~vi~~~~~~ 60 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMIG---ARIYTTAGSD 60 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHT---CEEEEEESSH
T ss_pred CCCCEEEEECCCCCcccccchhhcccc---ccceeeeccc
Confidence 357899999999999999999888777 6778877653
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=90.95 E-value=0.095 Score=47.96 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=29.8
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKR 256 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~ 256 (851)
..+|.|.||+|=+|+.|++.+++. +++.-+.+++|...
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~-~~~~lv~~~~~~~~ 41 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALAL-EGVQLGAALEREGS 41 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHS-TTEECCCEECCTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecccc
Confidence 358999999999999999999886 46555556666544
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=90.89 E-value=0.068 Score=42.35 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=32.0
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRG 257 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~ 257 (851)
-++++|||+||+|-+|...++-+...| .+|++..++++.
T Consensus 30 ~~~~~vlI~gasGgVG~~aiQlak~~G---~~Vi~~t~s~~k 68 (77)
T d1o8ca2 30 PQDGEIVVTGASGGVGSTAVALLHKLG---YQVVAVSGREST 68 (77)
T ss_dssp GGGCEEEESSTTSHHHHHHHHHHHHTT---CCEEEEESCGGG
T ss_pred cCCCcEEEEeCCCcHHHHHHHHHHHcC---CeEEEEECCHHH
Confidence 357899999999999999999777776 678888876543
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=90.68 E-value=0.21 Score=46.24 Aligned_cols=39 Identities=23% Similarity=0.187 Sum_probs=32.8
Q ss_pred hhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC
Q psy11859 214 RWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK 255 (851)
Q Consensus 214 ~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~ 255 (851)
+.-+|.+|||+||+|-+|...++-....| .+|+.++++.
T Consensus 26 ~v~~G~~VlV~ga~ggvG~~aiqlak~~G---a~vi~~~~~~ 64 (182)
T d1v3va2 26 GVKGGETVLVSAAAGAVGSVVGQIAKLKG---CKVVGAAGSD 64 (182)
T ss_dssp CCCSSCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESSH
T ss_pred CCCCCCEEEEEeCCCchhHHHHHHHHccC---CEEEEeCCCH
Confidence 34568999999999999999998777777 6899988764
|
| >d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: ADR1 species: Synthetic, based on Saccharomyces cerevisiae sequence
Probab=90.67 E-value=0.064 Score=33.29 Aligned_cols=26 Identities=38% Similarity=0.765 Sum_probs=14.4
Q ss_pred ccccCccccCccccCchhHHHhhh-hcCC
Q psy11859 749 SFKCDWQDCKWQFSRSDELSRHRR-SHFG 776 (851)
Q Consensus 749 p~~C~~~~C~k~F~~~~~L~~H~r-~H~g 776 (851)
||.|. .|++.|+++.-|.+|+. .|.|
T Consensus 1 Pf~C~--~C~R~FaRrDLlLRH~qKlH~g 27 (31)
T d2adra2 1 PYPCG--LCNRAFTRRDLLIRHAQKIHSG 27 (31)
T ss_dssp SEECT--TTCCEESSHHHHHHHHTTTSCC
T ss_pred Ccccc--cccchhhHHHHHHHHHHHHhcC
Confidence 45565 56666666666666643 3443
|
| >d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: GLI-Krueppel family member HKR3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.46 E-value=0.064 Score=30.98 Aligned_cols=21 Identities=19% Similarity=0.754 Sum_probs=12.9
Q ss_pred cccccCCccCccccChhhHHHHH
Q psy11859 719 TFQCTYPECLKFYAKMSHLKAHL 741 (851)
Q Consensus 719 ~~~C~~~~Cgk~F~~~~~L~~H~ 741 (851)
||+| ..|...|-++..|+.|+
T Consensus 2 pykc--sscsqqfmqkkdlqshm 22 (26)
T d2dlqa1 2 PYKC--SSCSQQFMQKKDLQSHM 22 (26)
T ss_dssp SEEC--SSSCCEESSHHHHHHHH
T ss_pred CCcc--cHHHHHHHHHHHHHHHH
Confidence 5666 55666666666666665
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=90.27 E-value=0.17 Score=45.41 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=31.2
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKR 256 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~ 256 (851)
-++|.|.||.|.+|+.+++.|.+.| +.|.+.+|...
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~G---~~V~~~d~~~~ 44 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRASG---YPISILDREDW 44 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTT---CCEEEECTTCG
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHcC---CCcEecccccc
Confidence 3689999999999999999999998 57788887653
|
| >d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Enhancer binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.03 E-value=0.088 Score=31.79 Aligned_cols=22 Identities=18% Similarity=0.575 Sum_probs=11.3
Q ss_pred cccccCCccCccccChhhHHHHHh
Q psy11859 719 TFQCTYPECLKFYAKMSHLKAHLR 742 (851)
Q Consensus 719 ~~~C~~~~Cgk~F~~~~~L~~H~~ 742 (851)
||.| ..|.-+|..+.+|..|++
T Consensus 1 py~C--~~CnF~FKTKGNLTKHmk 22 (29)
T d1bboa2 1 PYHC--TYCNFSFKTKGNLTKHMK 22 (29)
T ss_dssp CEEC--SSSSCEESSHHHHHHHHH
T ss_pred Cccc--ceeeeeEeeccchhHhhh
Confidence 4455 445555555555555554
|
| >d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: GLI-Krueppel family member HKR3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.68 E-value=0.068 Score=30.85 Aligned_cols=22 Identities=32% Similarity=0.744 Sum_probs=19.8
Q ss_pred ccccCccccCccccCchhHHHhhh
Q psy11859 749 SFKCDWQDCKWQFSRSDELSRHRR 772 (851)
Q Consensus 749 p~~C~~~~C~k~F~~~~~L~~H~r 772 (851)
||+|. .|...|.++..|+.|+-
T Consensus 2 pykcs--scsqqfmqkkdlqshmi 23 (26)
T d2dlqa1 2 PYKCS--SCSQQFMQKKDLQSHMI 23 (26)
T ss_dssp SEECS--SSCCEESSHHHHHHHHH
T ss_pred CCccc--HHHHHHHHHHHHHHHHH
Confidence 79998 89999999999999974
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=89.25 E-value=0.44 Score=38.74 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=31.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRG 257 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~ 257 (851)
|+||+|+|.|.++ -|..+++.|.+.| .+|++.+.....
T Consensus 3 ~~~K~v~ViGlG~-sG~s~a~~L~~~g---~~v~~~D~~~~~ 40 (93)
T d2jfga1 3 YQGKNVVIIGLGL-TGLSCVDFFLARG---VTPRVMDTRMTP 40 (93)
T ss_dssp CTTCCEEEECCSH-HHHHHHHHHHHTT---CCCEEEESSSSC
T ss_pred cCCCEEEEEeECH-HHHHHHHHHHHCC---CEEEEeeCCcCc
Confidence 6899999999955 6999999999998 677888775543
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=89.22 E-value=0.068 Score=48.53 Aligned_cols=34 Identities=32% Similarity=0.428 Sum_probs=25.0
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEe
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILC 252 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~ 252 (851)
=+|.|.||||++|..|++-|.+..--+..|..+.
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~ 35 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLA 35 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEec
Confidence 3799999999999999987665421245666654
|
| >d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: GLI-Krueppel family member HKR3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.09 E-value=0.11 Score=30.72 Aligned_cols=22 Identities=36% Similarity=0.777 Sum_probs=16.3
Q ss_pred cccccCCccCccccChhhHHHHHh
Q psy11859 719 TFQCTYPECLKFYAKMSHLKAHLR 742 (851)
Q Consensus 719 ~~~C~~~~Cgk~F~~~~~L~~H~~ 742 (851)
||+| ..|||.+-.+.+|..|..
T Consensus 1 pf~c--~kcgkcyfrkenllehea 22 (28)
T d2dlqa2 1 PFEC--PKCGKCYFRKENLLEHEA 22 (28)
T ss_dssp SCBC--TTTCCBCSSHHHHHHHHH
T ss_pred CCcc--ccchhhhhhHhHHHHHHH
Confidence 5777 678887777777777754
|
| >d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 64, ZFP68 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.02 E-value=0.14 Score=30.58 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=16.4
Q ss_pred cccccCCccCccccChhhHHHHHhhhc
Q psy11859 719 TFQCTYPECLKFYAKMSHLKAHLRRHS 745 (851)
Q Consensus 719 ~~~C~~~~Cgk~F~~~~~L~~H~~~H~ 745 (851)
|-+| ++|+.+..++..|+.|.++|.
T Consensus 2 pekc--~ecsyscsskaalrvh~rihc 26 (28)
T d1x5wa1 2 PEKC--SECSYSCSSKAALRIHERIHC 26 (28)
T ss_dssp SEEC--SSSSCEESSHHHHHHHHGGGC
T ss_pred CccC--cccccccCcHHHHHHhhcccc
Confidence 3456 667777777777777766664
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=88.80 E-value=0.22 Score=44.99 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=31.6
Q ss_pred CEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy11859 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRG 257 (851)
Q Consensus 219 k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~ 257 (851)
|+|+|.|+ |-+|+.+...|.+.| ..|.++.|....
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G---~~V~~~~r~~~~ 35 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQG---HEVQGWLRVPQP 35 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSSCCS
T ss_pred CEEEEECc-CHHHHHHHHHHHHCC---CceEEEEcCHHH
Confidence 78999999 999999999999998 789999997653
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.39 E-value=0.51 Score=42.87 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=29.8
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKR 256 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~ 256 (851)
.-.|.+|+|.|+ |-+|...+..+...| .+|++++++..
T Consensus 25 ~~~g~~vlI~Ga-G~vG~~a~q~ak~~G---~~vi~~~~~~~ 62 (168)
T d1piwa2 25 CGPGKKVGIVGL-GGIGSMGTLISKAMG---AETYVISRSSR 62 (168)
T ss_dssp CSTTCEEEEECC-SHHHHHHHHHHHHHT---CEEEEEESSST
T ss_pred cCCCCEEEEECC-CCcchhHHHHhhhcc---ccccccccchh
Confidence 346889999987 889998887666666 57888888654
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.36 E-value=0.42 Score=44.04 Aligned_cols=38 Identities=26% Similarity=0.227 Sum_probs=32.0
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRG 257 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~ 257 (851)
+|.+|||+||+|=+|...++-....| .+|+...++...
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~G---a~Viat~~s~~k 68 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKRG---YTVEASTGKAAE 68 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTT---CCEEEEESCTTC
T ss_pred CCCEEEEEeccchHHHHHHHHHHHcC---CceEEecCchHH
Confidence 47789999999999999998877777 678888887654
|
| >d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 64, ZFP68 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.94 E-value=0.14 Score=30.93 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=11.9
Q ss_pred ccccccCCccCccccChhhHHHHHh
Q psy11859 718 RTFQCTYPECLKFYAKMSHLKAHLR 742 (851)
Q Consensus 718 r~~~C~~~~Cgk~F~~~~~L~~H~~ 742 (851)
|||+| ..|+---.+.++|..|++
T Consensus 1 rPFkC--~~CsFDtkq~SnL~kH~k 23 (29)
T d1x5wa2 1 RPFKC--NYCSFDTKQPSNLSKHMK 23 (29)
T ss_dssp CSEEC--SSSSCEESSHHHHHHHHH
T ss_pred CCccc--ceecccccCcchHHHHHH
Confidence 35555 345555555555555554
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=87.52 E-value=0.48 Score=42.23 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=49.9
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCCcC
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANL 299 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~~l 299 (851)
.|+|.|+ |=+|..+++.|.+.+ ..|.+++..... ...++.+. ...++.++.||.++++
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~~---~~v~vId~d~~~--~~~~~~~~---------------~~~~~~vi~Gd~~d~~- 62 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQRG---QNVTVISNLPED--DIKQLEQR---------------LGDNADVIPGDSNDSS- 62 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTT---CCEEEEECCCHH--HHHHHHHH---------------HCTTCEEEESCTTSHH-
T ss_pred EEEEECC-CHHHHHHHHHHHHcC---CCEEEEeccchh--HHHHHHHh---------------hcCCcEEEEccCcchH-
Confidence 4788888 899999999999988 566777654321 11222211 1237889999999986
Q ss_pred CCCHHHHHH-HhcCccEEEEcc
Q psy11859 300 GIKDSDLLM-LQEEVSVVFNGA 320 (851)
Q Consensus 300 gls~~~~~~-~~~~vd~ViH~A 320 (851)
.+.. -++++++||=+.
T Consensus 63 -----~L~~a~i~~a~~vi~~~ 79 (153)
T d1id1a_ 63 -----VLKKAGIDRCRAILALS 79 (153)
T ss_dssp -----HHHHHTTTTCSEEEECS
T ss_pred -----HHHHhccccCCEEEEcc
Confidence 4444 356788887554
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.58 E-value=0.13 Score=56.32 Aligned_cols=125 Identities=14% Similarity=0.075 Sum_probs=70.8
Q ss_pred hhhcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHH-----HHHh---cChhhHHHhhhCcccC
Q psy11859 213 ARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-----AEFS---KLPVFERLRKECPAQL 284 (851)
Q Consensus 213 ~~~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl-----~~~~---~~~~f~~l~~~~~~~~ 284 (851)
+.-++..+|+|.|++| +|++++..|+..| |..|.+++...-..+...|- .++- ....-++|.+.+|+.
T Consensus 20 Q~~L~~s~VlvvG~gg-lG~Ei~knLvl~G--Vg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v- 95 (529)
T d1yova1 20 QEALESAHVCLINATA-TGTEILKNLVLPG--IGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDV- 95 (529)
T ss_dssp HHHHHHCEEEECCCSH-HHHHHHHHHHTTT--CSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTS-
T ss_pred HHHHhCCCEEEECCCH-HHHHHHHHHHHhc--CCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCC-
Confidence 3446678999999865 9999999999755 78999987654321111110 0000 011233455555554
Q ss_pred CCeEEEEcCCCCCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeeee
Q psy11859 285 SRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAF 363 (851)
Q Consensus 285 ~~v~~v~gDi~~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vSTa~ 363 (851)
++..+..++.+.. +.....+.+.|+|+-+.. |......+-++|++.+ ..||+++|..
T Consensus 96 -~i~~~~~~~~~~~-----~~~~~~~~~~dvVv~~~~--------------~~~~~~~l~~~c~~~~--ip~i~~~~~G 152 (529)
T d1yova1 96 -SGSFVEESPENLL-----DNDPSFFCRFTVVVATQL--------------PESTSLRLADVLWNSQ--IPLLICRTYG 152 (529)
T ss_dssp -BCCEESSCHHHHH-----HSCGGGGGGCSEEEEESC--------------CHHHHHHHHHHHHHHT--CCEEEEEEET
T ss_pred -cEEEEcCCchhhh-----hhHHHHhcCCCEEEECCC--------------CHHHHHHHHHHHHHcC--CCEEEEeccC
Confidence 4555555443210 001234567899995532 1222234667777764 4588888853
|
| >d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transcription factor IIIA, TFIIIA species: Xenopus laevis [TaxId: 8355]
Probab=86.14 E-value=0.14 Score=31.39 Aligned_cols=30 Identities=23% Similarity=0.587 Sum_probs=26.9
Q ss_pred CccccCccccCccccCchhHHHhhhhcCCC
Q psy11859 748 RSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777 (851)
Q Consensus 748 kp~~C~~~~C~k~F~~~~~L~~H~r~H~ge 777 (851)
+.|.|....|+..|...-.|..|+-.|+||
T Consensus 2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe 31 (31)
T d1tf3a1 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE 31 (31)
T ss_dssp CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence 568898889999999999999999999986
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=86.13 E-value=1.6 Score=36.55 Aligned_cols=95 Identities=16% Similarity=0.220 Sum_probs=60.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
++|++|||.|| |-+|..-++.|++.| ..|.+...... ..+..+.. ..+++++..+..
T Consensus 10 l~~k~vlVvG~-G~va~~ka~~ll~~g---a~v~v~~~~~~-----~~~~~~~~--------------~~~i~~~~~~~~ 66 (113)
T d1pjqa1 10 LRDRDCLIVGG-GDVAERKARLLLEAG---ARLTVNALTFI-----PQFTVWAN--------------EGMLTLVEGPFD 66 (113)
T ss_dssp CBTCEEEEECC-SHHHHHHHHHHHHTT---BEEEEEESSCC-----HHHHHHHT--------------TTSCEEEESSCC
T ss_pred eCCCEEEEECC-CHHHHHHHHHHHHCC---CeEEEEeccCC-----hHHHHHHh--------------cCCceeeccCCC
Confidence 57899999987 559999999999998 67777654332 11211111 137888888777
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCcchhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeee
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFST 361 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~~~~~~~~~Nv~Gt~~ll~~a~~~~~~~~fV~vST 361 (851)
+.+ +.+++.|+-+.... . . ...+.+.|++.+ .+|.+..
T Consensus 67 ~~d-----------l~~~~lv~~at~d~----~------~----n~~i~~~a~~~~---ilVNv~D 104 (113)
T d1pjqa1 67 ETL-----------LDSCWLAIAATDDD----T------V----NQRVSDAAESRR---IFCNVVD 104 (113)
T ss_dssp GGG-----------GTTCSEEEECCSCH----H------H----HHHHHHHHHHTT---CEEEETT
T ss_pred HHH-----------hCCCcEEeecCCCH----H------H----HHHHHHHHHHcC---CEEEeCC
Confidence 554 36778887443221 1 1 134677787765 3555544
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.93 E-value=0.67 Score=46.24 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=23.7
Q ss_pred CccHHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy11859 226 GTGFMGKVLLEKLLRSCPDIGKVYILCRAKR 256 (851)
Q Consensus 226 atGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~ 256 (851)
.||-.|..|++.+++.| ..|.++.++..
T Consensus 44 SSGk~G~alA~~~~~~G---a~V~li~g~~s 71 (290)
T d1p9oa_ 44 SSGRRGATSAEAFLAAG---YGVLFLYRARS 71 (290)
T ss_dssp CCCHHHHHHHHHHHHTT---CEEEEEEETTS
T ss_pred CchHHHHHHHHHHHHcC---CEEEEEecCCc
Confidence 57999999999999999 78888876643
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=85.70 E-value=1.7 Score=37.46 Aligned_cols=39 Identities=21% Similarity=0.350 Sum_probs=31.6
Q ss_pred hhcCCCEEEEecCc---cHHHHHHHHHHHHhCCCccEEEEEecC
Q psy11859 214 RWYAGRSVLVTGGT---GFMGKVLLEKLLRSCPDIGKVYILCRA 254 (851)
Q Consensus 214 ~~~~~k~VlVTGat---GFIG~~Lv~~Ll~~g~~v~~V~~l~R~ 254 (851)
.+++.++|.|.||+ |.+|..+++.|.+.+. .+|+.+...
T Consensus 4 ~lf~PksIAVVGaS~~~~~~g~~v~~~L~~~~~--g~v~pVnP~ 45 (129)
T d2csua1 4 YFFNPKGIAVIGASNDPKKLGYEVFKNLKEYKK--GKVYPVNIK 45 (129)
T ss_dssp TTTSCSEEEEETCCSCTTSHHHHHHHHHTTCCS--SEEEEECSS
T ss_pred HhCCCCeEEEEccCCCCCCcHHHHHHHHHHcCC--CcEEEeccC
Confidence 46889999999998 9999999999876542 578877543
|
| >d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Transcription factor IIIA, TFIIIA species: Xenopus laevis [TaxId: 8355]
Probab=85.24 E-value=0.15 Score=30.07 Aligned_cols=26 Identities=27% Similarity=0.710 Sum_probs=22.2
Q ss_pred cccCccccCccccCchhHHHhhhhcC
Q psy11859 750 FKCDWQDCKWQFSRSDELSRHRRSHF 775 (851)
Q Consensus 750 ~~C~~~~C~k~F~~~~~L~~H~r~H~ 775 (851)
|.|....|++.|.....|+.|+-+|+
T Consensus 2 yvchfe~c~kafkkhnqlkvhqf~ht 27 (28)
T d2j7ja1 2 YVCHFENCGKAFKKHNQLKVHQFSHT 27 (28)
T ss_dssp EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred eEEEecCchHHHhhccceEEEeeccc
Confidence 56765579999999999999998886
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.18 E-value=1.3 Score=37.24 Aligned_cols=66 Identities=18% Similarity=0.137 Sum_probs=48.2
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQA 297 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~~~ 297 (851)
+.+|.|-| +|-||+-|+....+-| .++++++...+.. ...---.++.||..|.
T Consensus 11 ~~kigIlG-gGQL~rMla~aA~~lG---~~v~v~d~~~~~P-----------------------A~~va~~~i~~~~~d~ 63 (111)
T d1kjqa2 11 ATRVMLLG-SGELGKEVAIECQRLG---VEVIAVDRYADAP-----------------------AMHVAHRSHVINMLDG 63 (111)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHTTT---CEEEEEESSTTCG-----------------------GGGGSSEEEECCTTCH
T ss_pred CCEEEEEe-CCHHHHHHHHHHHHCC---CEEEEEcCCCCCc-----------------------hhhcCCeEEECCCCCH
Confidence 35799998 7999999999998888 7899998876541 1100124678999988
Q ss_pred cCCCCHHHHHHHh--cCccEE
Q psy11859 298 NLGIKDSDLLMLQ--EEVSVV 316 (851)
Q Consensus 298 ~lgls~~~~~~~~--~~vd~V 316 (851)
+ .+..+. .++|+|
T Consensus 64 ~------~l~~~~~~~~~Dvi 78 (111)
T d1kjqa2 64 D------ALRRVVELEKPHYI 78 (111)
T ss_dssp H------HHHHHHHHHCCSEE
T ss_pred H------HHHHHHHhhCCceE
Confidence 6 555554 367887
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.15 E-value=0.99 Score=39.41 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=25.1
Q ss_pred EEEEecCccHHHHHHHHHHHHhCCCccEEEEEec
Q psy11859 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCR 253 (851)
Q Consensus 220 ~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R 253 (851)
+|.|.||+|=+|+.+++.+.+. ++..-+..+++
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~-~~~~l~~~~d~ 33 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAA-DDLTLSAELDA 33 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS-TTSEEEEEECT
T ss_pred CEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEec
Confidence 6899999999999999988876 55444444443
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=82.89 E-value=0.77 Score=41.53 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=46.8
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDI 294 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi 294 (851)
.-.|.+|+|.|+ |-||...++-+...| .+++++++.... .+..+++-. . .++ |.
T Consensus 28 ~~~G~~VlI~Ga-G~vG~~a~qlak~~G---a~~i~~~~~~~~---~~~a~~lGa----------------d-~~i--~~ 81 (168)
T d1uufa2 28 AGPGKKVGVVGI-GGLGHMGIKLAHAMG---AHVVAFTTSEAK---REAAKALGA----------------D-EVV--NS 81 (168)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESSGGG---HHHHHHHTC----------------S-EEE--ET
T ss_pred CCCCCEEEEecc-chHHHHHHHHhhccc---ccchhhccchhH---HHHHhccCC----------------c-EEE--EC
Confidence 346889999997 779999887666666 456677765432 122222111 1 122 33
Q ss_pred CCCcCCCCHHHHHHHhcCccEEEEccccC
Q psy11859 295 LQANLGIKDSDLLMLQEEVSVVFNGAASL 323 (851)
Q Consensus 295 ~~~~lgls~~~~~~~~~~vd~ViH~AA~~ 323 (851)
.+++ ......+++|+||.+++..
T Consensus 82 ~~~~------~~~~~~~~~D~vid~~g~~ 104 (168)
T d1uufa2 82 RNAD------EMAAHLKSFDFILNTVAAP 104 (168)
T ss_dssp TCHH------HHHTTTTCEEEEEECCSSC
T ss_pred chhh------HHHHhcCCCceeeeeeecc
Confidence 3332 4445557899999998753
|
| >d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 64, ZFP68 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.86 E-value=0.22 Score=30.12 Aligned_cols=25 Identities=32% Similarity=0.792 Sum_probs=21.5
Q ss_pred CccccCccccCccccCchhHHHhhhhc
Q psy11859 748 RSFKCDWQDCKWQFSRSDELSRHRRSH 774 (851)
Q Consensus 748 kp~~C~~~~C~k~F~~~~~L~~H~r~H 774 (851)
+||+|+ .|..--.+.++|..|++.-
T Consensus 1 rPFkC~--~CsFDtkq~SnL~kH~kk~ 25 (29)
T d1x5wa2 1 RPFKCN--YCSFDTKQPSNLSKHMKKF 25 (29)
T ss_dssp CSEECS--SSSCEESSHHHHHHHHHHH
T ss_pred CCcccc--eecccccCcchHHHHHHHH
Confidence 589998 8998889999999998743
|
| >d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 692, ZNF692 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.79 E-value=0.4 Score=28.73 Aligned_cols=22 Identities=23% Similarity=0.726 Sum_probs=18.6
Q ss_pred cccCCccCccccChhhHHHHHh
Q psy11859 721 QCTYPECLKFYAKMSHLKAHLR 742 (851)
Q Consensus 721 ~C~~~~Cgk~F~~~~~L~~H~~ 742 (851)
.|+++.||+.|+++..|..|.+
T Consensus 2 ~cdf~gc~kifsnrqylnhh~k 23 (30)
T d2dlka1 2 PCDFPGCGRIFSNRQYLNHHKK 23 (30)
T ss_dssp ECSSTTTCCEESSHHHHHHHHH
T ss_pred CCCCCCchhhhccHHHHHhHHH
Confidence 4888899999999988888866
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=82.65 E-value=1 Score=40.58 Aligned_cols=38 Identities=13% Similarity=0.158 Sum_probs=31.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK 255 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~ 255 (851)
-.|.+|+|.||+|-+|...+..+...+. ..|++..+..
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~--~~V~~~~~~~ 63 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSG--ATIIGVDVRE 63 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTC--CEEEEEESSH
T ss_pred CCCCEEEEEeccccceeeeeeccccccc--ccccccccch
Confidence 4578999999999999998888887764 5788888764
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=82.12 E-value=0.46 Score=43.31 Aligned_cols=38 Identities=29% Similarity=0.293 Sum_probs=31.6
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRG 257 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~~ 257 (851)
++.+|||+||+|=+|...++-....| .+|+...++...
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~G---a~Viat~~s~~k 60 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRG---YDVVASTGNREA 60 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHT---CCEEEEESSSST
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcC---CceEEEecCHHH
Confidence 35679999999999999997777777 688899987654
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=81.97 E-value=0.95 Score=40.94 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=30.1
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEec
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCR 253 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R 253 (851)
+.||+|+|.|.+..+|+-|...|.+.+ ..|++...
T Consensus 35 l~GK~v~VIGrS~~VG~Pla~lL~~~g---atVt~~h~ 69 (166)
T d1b0aa1 35 TFGLNAVVIGASNIVGRPMSMELLLAG---CTTTVTHR 69 (166)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHTTT---CEEEEECS
T ss_pred cccceEEEEeccccccHHHHHHHHHhh---cccccccc
Confidence 689999999999999999999999887 56766544
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=81.91 E-value=1.7 Score=39.38 Aligned_cols=121 Identities=17% Similarity=0.187 Sum_probs=61.4
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCC--ccEEEEEecCCCCCCHHHHHHHHhcChhhHHHhhhCcccCCCeEEEEcCCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPD--IGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDIL 295 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~--v~~V~~l~R~~~~~~~~~rl~~~~~~~~f~~l~~~~~~~~~~v~~v~gDi~ 295 (851)
..+|.|.||++.-...++..|+..-++ +.+|.+.+..+... +...+.. +.... ...........
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~---~~~~~~~-----~~~~~---~~~~~~~~~~~--- 68 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQ---DRIAGAC-----DVFIR---EKAPDIEFAAT--- 68 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHH---HHHHHHH-----HHHHH---HHCTTSEEEEE---
T ss_pred CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHH---HHHHHHH-----HHHHH---HhCCCcceEec---
Confidence 347888898544333456666765443 45888888764321 1111111 11100 11112222211
Q ss_pred CCcCCCCHHHHHHHhcCccEEEEccccCCcch-hHHHHHHH--------------------HHHHHHHHHHHHHhcCCce
Q psy11859 296 QANLGIKDSDLLMLQEEVSVVFNGAASLKLEA-ELKENVAA--------------------NTRGTQRLLDIALKMKKLV 354 (851)
Q Consensus 296 ~~~lgls~~~~~~~~~~vd~ViH~AA~~~~~~-~~~~~~~~--------------------Nv~Gt~~ll~~a~~~~~~~ 354 (851)
.+..+.++++|+||.+|+..+... ..++.+.. |+.-.+.+++..++.. ..
T Consensus 69 --------~d~~eal~~AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~-P~ 139 (167)
T d1u8xx1 69 --------TDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PD 139 (167)
T ss_dssp --------SCHHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TT
T ss_pred --------CChhhccCCCCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhC-CC
Confidence 134566789999999998765432 22233333 3444555555555553 45
Q ss_pred EEEEeee
Q psy11859 355 AFIHFST 361 (851)
Q Consensus 355 ~fV~vST 361 (851)
.++.+-|
T Consensus 140 A~li~~T 146 (167)
T d1u8xx1 140 AWMLNYS 146 (167)
T ss_dssp CEEEECC
T ss_pred eEEEEeC
Confidence 5555544
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=81.63 E-value=2.8 Score=37.68 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=28.2
Q ss_pred CCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy11859 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKR 256 (851)
Q Consensus 217 ~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~ 256 (851)
+..+|.|-| +|++|+.+++.|.+ .|++.-|-+.+|...
T Consensus 2 ~kirvgiiG-~G~ig~~~~~~l~~-~~~~elvav~~~~~~ 39 (170)
T d1f06a1 2 TNIRVAIVG-YGNLGRSVEKLIAK-QPDMDLVGIFSRRAT 39 (170)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHTT-CSSEEEEEEEESSSC
T ss_pred CcceEEEEC-ChHHHHHHHHHHHh-CCCcEEEEEEecccc
Confidence 345799998 59999999988876 477766666666543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=81.51 E-value=0.97 Score=41.09 Aligned_cols=34 Identities=18% Similarity=0.061 Sum_probs=30.5
Q ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC
Q psy11859 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK 255 (851)
Q Consensus 218 ~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~ 255 (851)
.|+|.|.|| |-+|..++..|.+.| +.|.+++|..
T Consensus 1 sk~iaIiGa-G~~G~~~A~~l~~~G---~~V~~~~r~~ 34 (184)
T d1bg6a2 1 SKTYAVLGL-GNGGHAFAAYLALKG---QSVLAWDIDA 34 (184)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSCH
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCC---CEEEEEECCH
Confidence 378999999 999999999999998 7899999864
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.86 E-value=0.67 Score=41.14 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=30.2
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEec
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCR 253 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R 253 (851)
++||+|||.|| |.+|..-++.|++.| .+|.++..
T Consensus 11 l~gkrvLViGg-G~va~~ka~~Ll~~G---A~VtVvap 44 (150)
T d1kyqa1 11 LKDKRILLIGG-GEVGLTRLYKLMPTG---CKLTLVSP 44 (150)
T ss_dssp CTTCEEEEEEE-SHHHHHHHHHHGGGT---CEEEEEEE
T ss_pred eCCCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEeC
Confidence 78999999999 889999999999998 67777753
|
| >d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Ying-yang 1 (yy1, zinc finger domain) species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.66 E-value=0.53 Score=28.08 Aligned_cols=24 Identities=29% Similarity=0.674 Sum_probs=17.2
Q ss_pred cccCCccCccccChhhHHHHHhhh
Q psy11859 721 QCTYPECLKFYAKMSHLKAHLRRH 744 (851)
Q Consensus 721 ~C~~~~Cgk~F~~~~~L~~H~~~H 744 (851)
.|....|+|.|...+.+..|+.+|
T Consensus 3 ~CphkgC~K~Frd~saMRKHlhtH 26 (28)
T d1ubdc1 3 ACPHKGCTKMFRDNSAMRKHLHTH 26 (28)
T ss_dssp ECCSTTCCCEESSHHHHHHHHGGG
T ss_pred cCCcccHHHHhhchHHHHHHhhcc
Confidence 355566777887777777777766
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=80.42 E-value=1.3 Score=39.96 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=29.3
Q ss_pred hcCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy11859 215 WYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKR 256 (851)
Q Consensus 215 ~~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~~ 256 (851)
.-.|.+|||.||+| +|...+..+...|. ..|++.++++.
T Consensus 26 ~~~G~tVlI~GaGG-vG~~aiq~ak~~G~--~~vi~~~~~~~ 64 (176)
T d2fzwa2 26 LEPGSVCAVFGLGG-VGLAVIMGCKVAGA--SRIIGVDINKD 64 (176)
T ss_dssp CCTTCEEEEECCSH-HHHHHHHHHHHHTC--SEEEEECSCGG
T ss_pred CCCCCEEEEecchh-HHHHHHHHHHHHhc--CceEEEcccHH
Confidence 34678999999865 79888888877774 57777766543
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=80.19 E-value=1.6 Score=39.52 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=30.3
Q ss_pred cCCCEEEEecCccHHHHHHHHHHHHhCCCccEEEEEecCC
Q psy11859 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAK 255 (851)
Q Consensus 216 ~~~k~VlVTGatGFIG~~Lv~~Ll~~g~~v~~V~~l~R~~ 255 (851)
.++++|+|-||+|- |+.++..|.+.+ .+|+++.|..
T Consensus 16 ~~~k~vlIlGaGGa-arai~~aL~~~~---~~i~I~nR~~ 51 (171)
T d1p77a1 16 RPNQHVLILGAGGA-TKGVLLPLLQAQ---QNIVLANRTF 51 (171)
T ss_dssp CTTCEEEEECCSHH-HHTTHHHHHHTT---CEEEEEESSH
T ss_pred CCCCEEEEECCcHH-HHHHHHHHcccC---ceeeeccchH
Confidence 57899999998776 899999998744 7899999985
|