Psyllid ID: psy11904

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MSHCAETWALNNGDRITSVRISFRHMVYEDALTILSYASPYEVQIETEKEIYFIMVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGSHYCQACAYKKGEHLVLVTADPEKGDKFALISGEHLVLVTADPEKGDKFAFDNHAFKEGTPIIRTLEDDKLKVSVPG
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEEEccccccHHHHHHHHccccEEEEEEEEEEcccHHHHcHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccEEEEEEEccccccccccccccccccccEEEEEccccEEEcccc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccEEEEEEEEccccEHHHHHHHHHccccccEEEEEEccccEEEEcHHHHHHHccccccccccccccccccccccEcccHHHHHHcccccccccccccHHHHHHcccccccccccHHHHHccccEEEEEEccccccccEEEEcccEEEEEEccccccccEcEccccccccccEEEEccccccEEEccc
Coil and Loop (DISEMBL)
MSHCAETWalnngdritsvRISFRHMVYEDALTILsyaspyevqieTEKEIYFIMVCSKCEKKlgkvitpdnwksgsrntiesggrrigenkaltaskarfnpytqkfesckicrQKVHqvgshycqacaykkgehlvlvtadpekgdkfaliSGEHLVlvtadpekgdkfafdnhafkegtpiirtleddklkvsvpg
Flexible Loop (DISEMBL)
mshcaetwalnngdritsvRISFRHMVYEDALTILSYASPYEVQIETEKEIYFIMVCSKCEKKLgkvitpdnwksgsrntiesggrrigenkaltaskarfnpytQKFESCKICRQKVHQVGSHYCQACAYKKGEHLVLVTADPEKGDKFALISGEHLVLVTADPEKGDKFAFdnhafkegtpiirtleddklkvsvpg
Low Complexity Region (SEG)
MSHCAETWALNNGDRITSVRISFRHMVYEDALTILSYASPYEVQIETEKEIYFIMVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGSHYCQACAYKKGEHLVLVTADPEKGDKFALISGEHLVLVTADPEKGDKFAFDNHAFKEGTPIIRTLEDDKLKVSVPG
Disordered region (IsUnstruct)
****AETWALNNGDRITSVRISFRHMVYEDALTILSYASPYEVQIETEKEIYFIMVCSKCEKKLGKVITPDNW*************************ARFNPYTQKFESCKICRQKVHQVGSHYCQACAYKKGEHLVLVTADPEKGDKFALISGEHLVLVTADPEKGDKFAFDNHAFKEGTPIIR*************
Disordered Region (DISOPRED)
***********NGDRITSVRISFRHMVYEDALTILSYASPYEVQIETE***********************************************************FESCKICRQKVHQVGSHYCQACAYKKGEHLVLVT***********ISGEHLVLVTADPEKGDKFAFDNHAFKEGTPIIRTLEDDKLKVSVP*
Disordered Region (DISEMBL)
MSHCAETWALNNGDRITSVRISFRHMVYEDALTILSYASPYEVQIETEKEIYFIMVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGSHYCQACAYKKGEHLVLVTADPEKGDKFALISGEHLVLVTADPEKGDKFAFDNHAFKEGTPIIRTLEDD********
Disordered Region (DISPRO)
********ALNNGDRITSVRISFRHMVYEDALTILSYASPYEVQIETEKEIYFIMVCSKCEKKLGKVITPDNWKS**********RRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGSHYCQACAYKKGEHLVLVTADPEKGDKFALISGEHLVLVTADPEKGDKFAFDNHAFKEGTPIIRTLEDDKLKVSVP*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSHCAETWALNNGDRITSVRISFRHMVYEDALTILSYASPYEVQIETEKEIYFIMVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGSHYCQACAYKKGEHLVLVTADPEKGDKFALISGEHLVLVTADPEKGDKFAFDNHAFKEGTPIIRTLEDDKLKVSVPG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	199	2.2.26 [Sep-21-2011]
Q792Q4	101	Cysteine-rich PDZ-binding	yes	N/A	0.402	0.792	0.716	1e-29
O70333	101	Cysteine-rich PDZ-binding	yes	N/A	0.402	0.792	0.716	1e-29
Q9P021	101	Cysteine-rich PDZ-binding	yes	N/A	0.402	0.792	0.716	3e-29
Q3ZC66	101	Cysteine-rich PDZ-binding	yes	N/A	0.402	0.792	0.716	3e-29
Q6NU28	101	Cysteine-rich PDZ-binding	N/A	N/A	0.402	0.792	0.728	3e-29
Q567Z6	101	Cysteine-rich PDZ-binding	yes	N/A	0.402	0.792	0.691	2e-28
Q5ZKB6	101	Cysteine-rich PDZ-binding	yes	N/A	0.402	0.792	0.703	2e-28
Q1WCC0	101	Cysteine-rich PDZ-binding	N/A	N/A	0.402	0.792	0.691	7e-28
Q8IVF2	5795	Protein AHNAK2 OS=Homo sa	no	N/A	0.251	0.008	0.38	0.0004

>sp|Q792Q4|CRIPT_RAT Cysteine-rich PDZ-binding protein OS=Rattus norvegicus GN=Cript PE=1 SV=1

 Score =  129 bits (324), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 68/81 (83%), Gaps = 1/81 (1%)

Query: 55  MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQ-KFESCKI 113
           MVC KCEKKLG+VITPD WK G+RNT ESGGR++ ENKALT+ KARF+PY + KF +C+I
Sbjct: 1   MVCEKCEKKLGRVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRI 60

Query: 114 CRQKVHQVGSHYCQACAYKKG 134
           C+  VHQ GSHYCQ CAYKKG
Sbjct: 61  CKSSVHQPGSHYCQGCAYKKG 81

Involved in the cytoskeletal anchoring of DLG4 in excitatory synapses.
Rattus norvegicus (taxid: 10116)

>sp|O70333|CRIPT_MOUSE Cysteine-rich PDZ-binding protein OS=Mus musculus GN=Cript PE=1 SV=1

 Score =  129 bits (324), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 68/81 (83%), Gaps = 1/81 (1%)

Query: 55  MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQ-KFESCKI 113
           MVC KCEKKLG+VITPD WK G+RNT ESGGR++ ENKALT+ KARF+PY + KF +C+I
Sbjct: 1   MVCEKCEKKLGRVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRI 60

Query: 114 CRQKVHQVGSHYCQACAYKKG 134
           C+  VHQ GSHYCQ CAYKKG
Sbjct: 61  CKSSVHQPGSHYCQGCAYKKG 81

Involved in the cytoskeletal anchoring of DLG4 in excitatory synapses.

Mus musculus (taxid: 10090)

>sp|Q9P021|CRIPT_HUMAN Cysteine-rich PDZ-binding protein OS=Homo sapiens GN=CRIPT PE=1 SV=1

 Score =  128 bits (321), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 67/81 (82%), Gaps = 1/81 (1%)

Query: 55  MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQ-KFESCKI 113
           MVC KCEKKLG VITPD WK G+RNT ESGGR++ ENKALT+ KARF+PY + KF +C+I
Sbjct: 1   MVCEKCEKKLGTVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRI 60

Query: 114 CRQKVHQVGSHYCQACAYKKG 134
           C+  VHQ GSHYCQ CAYKKG
Sbjct: 61  CKSSVHQPGSHYCQGCAYKKG 81

Involved in the cytoskeletal anchoring of DLG4 in excitatory synapses.

Homo sapiens (taxid: 9606)

>sp|Q3ZC66|CRIPT_BOVIN Cysteine-rich PDZ-binding protein OS=Bos taurus GN=CRIPT PE=1 SV=1

 Score =  128 bits (321), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 67/81 (82%), Gaps = 1/81 (1%)

Query: 55  MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQ-KFESCKI 113
           MVC KCEKKLG VITPD WK G+RNT ESGGR++ ENKALT+ KARF+PY + KF +C+I
Sbjct: 1   MVCEKCEKKLGTVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRI 60

Query: 114 CRQKVHQVGSHYCQACAYKKG 134
           C+  VHQ GSHYCQ CAYKKG
Sbjct: 61  CKSSVHQPGSHYCQGCAYKKG 81

Involved in the cytoskeletal anchoring of DLG4 in excitatory synapses.

Bos taurus (taxid: 9913)

>sp|Q6NU28|CRIPT_XENLA Cysteine-rich PDZ-binding protein OS=Xenopus laevis GN=cript PE=3 SV=1

 Score =  127 bits (320), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/81 (72%), Positives = 66/81 (81%), Gaps = 1/81 (1%)

Query: 55  MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQ-KFESCKI 113
           MVC KCEKKLG VITPD WKSG+RNT ESGGR++ ENKALT+  ARFNPY + KF  C+I
Sbjct: 1   MVCDKCEKKLGTVITPDTWKSGARNTTESGGRKLNENKALTSKTARFNPYGKNKFAICRI 60

Query: 114 CRQKVHQVGSHYCQACAYKKG 134
           C+  VHQ GSHYCQ CAYKKG
Sbjct: 61  CKSSVHQPGSHYCQGCAYKKG 81

Xenopus laevis (taxid: 8355)

>sp|Q567Z6|CRIPT_DANRE Cysteine-rich PDZ-binding protein OS=Danio rerio GN=cript PE=3 SV=1

 Score =  125 bits (314), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/81 (69%), Positives = 66/81 (81%), Gaps = 1/81 (1%)

Query: 55  MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQK-FESCKI 113
           MVC KCEKKLG+VITPD WK G+RNT ESGGR++ ENK LT+ KARF+PY +  F +C+I
Sbjct: 1   MVCEKCEKKLGRVITPDTWKDGARNTTESGGRKLNENKMLTSKKARFDPYGKSGFATCRI 60

Query: 114 CRQKVHQVGSHYCQACAYKKG 134
           C+  VHQ GSHYCQ CAYKKG
Sbjct: 61  CKSSVHQSGSHYCQGCAYKKG 81

Danio rerio (taxid: 7955)

>sp|Q5ZKB6|CRIPT_CHICK Cysteine-rich PDZ-binding protein OS=Gallus gallus GN=CRIPT PE=3 SV=1

 Score =  125 bits (313), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/81 (70%), Positives = 66/81 (81%), Gaps = 1/81 (1%)

Query: 55  MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQ-KFESCKI 113
           MVC KCE+KLG VITPD WK G+RNT ESGGR++ ENKALT+ KARF+PY + KF  C+I
Sbjct: 1   MVCEKCERKLGTVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFAICRI 60

Query: 114 CRQKVHQVGSHYCQACAYKKG 134
           C+  VHQ GSHYCQ CAYKKG
Sbjct: 61  CKSSVHQPGSHYCQGCAYKKG 81

Gallus gallus (taxid: 9031)

>sp|Q1WCC0|CRIPT_ICTPU Cysteine-rich PDZ-binding protein OS=Ictalurus punctatus GN=cript PE=3 SV=1

 Score =  123 bits (309), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 56/81 (69%), Positives = 65/81 (80%), Gaps = 1/81 (1%)

Query: 55  MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQK-FESCKI 113
           MVC KCEKKLG+VITPD WK G+RNT ESGGR+I ENK LT+ KA F+PY +  F +C+I
Sbjct: 1   MVCEKCEKKLGRVITPDTWKDGARNTTESGGRKINENKMLTSKKAGFDPYGKSGFSTCRI 60

Query: 114 CRQKVHQVGSHYCQACAYKKG 134
           C+  VHQ GSHYCQ CAYKKG
Sbjct: 61  CKSSVHQSGSHYCQGCAYKKG 81

Ictalurus punctatus (taxid: 7998)

>sp|Q8IVF2|AHNK2_HUMAN Protein AHNAK2 OS=Homo sapiens GN=AHNAK2 PE=1 SV=2

 Score = 44.7 bits (104), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 32/50 (64%)

Query: 2   SHCAETWALNNGDRITSVRISFRHMVYEDALTILSYASPYEVQIETEKEI 51
           S  A+ + L  GD++ S  + F ++ YEDAL IL Y+ PY+VQ +  +++
Sbjct: 145 SSAAKLFNLREGDQLLSTTVFFENIKYEDALKILQYSEPYKVQFKIRRQL 194

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
307169189	1082	Histone demethylase UTX [Camponotus flor	0.422	0.077	0.75	9e-35
357627435	507	putative postsynaptic protein CRIPT [Dan	0.402	0.157	0.825	2e-34
340710093	100	PREDICTED: cysteine-rich PDZ-binding pro	0.396	0.79	0.835	6e-34
383853702	100	PREDICTED: cysteine-rich PDZ-binding pro	0.396	0.79	0.822	7e-34
110771988	100	PREDICTED: cysteine-rich PDZ-binding pro	0.396	0.79	0.822	1e-33
91092996	100	PREDICTED: similar to Cysteine-rich PDZ-	0.402	0.8	0.825	1e-33
322798625	100	hypothetical protein SINV_08093 [Solenop	0.396	0.79	0.835	2e-33
332023190	100	Cysteine-rich PDZ-binding protein [Acrom	0.396	0.79	0.835	2e-33
307206956	100	Cysteine-rich PDZ-binding protein [Harpe	0.402	0.8	0.812	3e-33
156548596	100	PREDICTED: cysteine-rich PDZ-binding pro	0.402	0.8	0.787	6e-33

>gi|307169189|gb|EFN62005.1| Histone demethylase UTX [Camponotus floridanus]

 Score =  152 bits (383), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 69/92 (75%), Positives = 78/92 (84%), Gaps = 8/92 (8%)

Query: 51   IYFI--------MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFN 102
            IYF+        MVC KCEKKLGKVITPD WK+G+RNT+ESGGR++GENKAL+A KARFN
Sbjct: 971  IYFLPQRRPNPDMVCEKCEKKLGKVITPDPWKTGARNTVESGGRQVGENKALSAGKARFN 1030

Query: 103  PYTQKFESCKICRQKVHQVGSHYCQACAYKKG 134
            PYT KFE C+ICRQKVHQVGSHYCQ+CAYKK 
Sbjct: 1031 PYTTKFEICRICRQKVHQVGSHYCQSCAYKKA 1062

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357627435|gb|EHJ77123.1| putative postsynaptic protein CRIPT [Danaus plexippus]

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/80 (82%), Positives = 73/80 (91%)

Query: 55  MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKIC 114
           MVC KCEKKLG+VITPD WK+G+RNT+ESGGR++GENKALTA KAR+NPYT KF  CKIC
Sbjct: 1   MVCDKCEKKLGRVITPDPWKTGARNTVESGGRKVGENKALTAKKARYNPYTSKFYECKIC 60

Query: 115 RQKVHQVGSHYCQACAYKKG 134
           R KVHQVGSHYCQACAYKKG
Sbjct: 61  RTKVHQVGSHYCQACAYKKG 80

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710093|ref|XP_003393631.1| PREDICTED: cysteine-rich PDZ-binding protein-like [Bombus terrestris] gi|350413867|ref|XP_003490138.1| PREDICTED: cysteine-rich PDZ-binding protein-like [Bombus impatiens]

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 66/79 (83%), Positives = 74/79 (93%)

Query: 55  MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKIC 114
           MVC KCEKKLGKVITPD WKSG+RNT+ESGGR++GENKAL+A KARFNPYT  FE+C+IC
Sbjct: 1   MVCEKCEKKLGKVITPDPWKSGARNTVESGGRKVGENKALSAGKARFNPYTVTFETCRIC 60

Query: 115 RQKVHQVGSHYCQACAYKK 133
           RQKVHQVGSHYCQ+CAYKK
Sbjct: 61  RQKVHQVGSHYCQSCAYKK 79

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853702|ref|XP_003702361.1| PREDICTED: cysteine-rich PDZ-binding protein-like [Megachile rotundata]

 Score =  149 bits (375), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 65/79 (82%), Positives = 74/79 (93%)

Query: 55  MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKIC 114
           MVC KCEKKLG+VITPD WKSG+RNT+ESGGR++GENKAL+A KARFNPYT  FE+C+IC
Sbjct: 1   MVCEKCEKKLGRVITPDPWKSGARNTVESGGRKVGENKALSAGKARFNPYTATFETCRIC 60

Query: 115 RQKVHQVGSHYCQACAYKK 133
           RQKVHQVGSHYCQ+CAYKK
Sbjct: 61  RQKVHQVGSHYCQSCAYKK 79

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110771988|ref|XP_001120258.1| PREDICTED: cysteine-rich PDZ-binding protein [Apis mellifera] gi|380026821|ref|XP_003697139.1| PREDICTED: cysteine-rich PDZ-binding protein-like [Apis florea]

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/79 (82%), Positives = 74/79 (93%)

Query: 55  MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKIC 114
           MVC KCEKKLGKVITPD WK+G+RNT+ESGGR++GENKAL+A KARFNPYT  FE+C+IC
Sbjct: 1   MVCEKCEKKLGKVITPDPWKNGARNTVESGGRKVGENKALSAGKARFNPYTTTFETCRIC 60

Query: 115 RQKVHQVGSHYCQACAYKK 133
           RQKVHQVGSHYCQ+CAYKK
Sbjct: 61  RQKVHQVGSHYCQSCAYKK 79

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91092996|ref|XP_968315.1| PREDICTED: similar to Cysteine-rich PDZ-binding protein (Cysteine-rich interactor of PDZ three) (Cysteine-rich interactor of PDZ3) [Tribolium castaneum] gi|270003175|gb|EEZ99622.1| hypothetical protein TcasGA2_TC002140 [Tribolium castaneum]

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/80 (82%), Positives = 73/80 (91%)

Query: 55  MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKIC 114
           MVC KC+KKLGKVITPD WKSG+RNT ESGGR++ ENKALTASK RFNPYT  FE+C+IC
Sbjct: 1   MVCEKCQKKLGKVITPDPWKSGARNTTESGGRKVNENKALTASKNRFNPYTSSFETCRIC 60

Query: 115 RQKVHQVGSHYCQACAYKKG 134
           RQKVHQVGSHYCQ+CAYKKG
Sbjct: 61  RQKVHQVGSHYCQSCAYKKG 80

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322798625|gb|EFZ20229.1| hypothetical protein SINV_08093 [Solenopsis invicta]

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/79 (83%), Positives = 73/79 (92%)

Query: 55  MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKIC 114
           MVC KCEKKLGKVITPD WK+G+RNT ESGGR++GENKAL+A KARFNPYT KFE C+IC
Sbjct: 1   MVCEKCEKKLGKVITPDPWKTGARNTTESGGRKVGENKALSAGKARFNPYTTKFEICRIC 60

Query: 115 RQKVHQVGSHYCQACAYKK 133
           RQKVHQVGSHYCQ+CAYKK
Sbjct: 61  RQKVHQVGSHYCQSCAYKK 79

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023190|gb|EGI63446.1| Cysteine-rich PDZ-binding protein [Acromyrmex echinatior]

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/79 (83%), Positives = 73/79 (92%)

Query: 55  MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKIC 114
           MVC KCEKKLGKVITPD WK+G+RNT ESGGR++GENKAL+A KARFNPYT KFE C+IC
Sbjct: 1   MVCEKCEKKLGKVITPDPWKTGARNTTESGGRKVGENKALSAGKARFNPYTTKFEICRIC 60

Query: 115 RQKVHQVGSHYCQACAYKK 133
           RQKVHQVGSHYCQ+CAYKK
Sbjct: 61  RQKVHQVGSHYCQSCAYKK 79

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206956|gb|EFN84800.1| Cysteine-rich PDZ-binding protein [Harpegnathos saltator]

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/80 (81%), Positives = 73/80 (91%)

Query: 55  MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKIC 114
           MVC KC KKLG VITPD WK+G+RNT+ESGGR++GENKAL+A KARF PYT KFESC+IC
Sbjct: 1   MVCEKCAKKLGTVITPDPWKAGARNTVESGGRKVGENKALSAGKARFTPYTTKFESCRIC 60

Query: 115 RQKVHQVGSHYCQACAYKKG 134
           RQKVHQVGSHYCQ+CAYKKG
Sbjct: 61  RQKVHQVGSHYCQSCAYKKG 80

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156548596|ref|XP_001607753.1| PREDICTED: cysteine-rich PDZ-binding protein-like [Nasonia vitripennis]

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 63/80 (78%), Positives = 73/80 (91%)

Query: 55  MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKIC 114
           MVC KCEKKLGKVITPD WK+G+RNT+ESGGR++GENKAL+ +K RFNPYT KFE+C+IC
Sbjct: 1   MVCDKCEKKLGKVITPDPWKAGARNTVESGGRKVGENKALSTAKNRFNPYTAKFEACRIC 60

Query: 115 RQKVHQVGSHYCQACAYKKG 134
           RQKVHQ GSHYCQ+CAYKK 
Sbjct: 61  RQKVHQAGSHYCQSCAYKKA 80

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
MGI|MGI:1929655	101	Cript "cysteine-rich PDZ-bindi	0.402	0.792	0.716	1.8e-30
RGD|621545	101	Cript "cysteine-rich PDZ-bindi	0.402	0.792	0.716	1.8e-30
UNIPROTKB|Q3ZC66	101	CRIPT "Cysteine-rich PDZ-bindi	0.402	0.792	0.716	3.8e-30
UNIPROTKB|Q9P021	101	CRIPT "Cysteine-rich PDZ-bindi	0.402	0.792	0.716	3.8e-30
UNIPROTKB|Q5ZKB6	101	CRIPT "Cysteine-rich PDZ-bindi	0.402	0.792	0.703	2.1e-29
ZFIN|ZDB-GENE-050417-451	101	cript "cysteine-rich PDZ-bindi	0.402	0.792	0.691	2.7e-29
TAIR|locus:2195738	98	AT1G61780 "AT1G61780" [Arabido	0.391	0.795	0.587	9e-22
WB|WBGene00044614	99	C36B1.14 [Caenorhabditis elega	0.386	0.777	0.390	4.5e-11
ASPGD|ASPL0000067618	135	AN7283 [Emericella nidulans (t	0.271	0.4	0.421	3.2e-06
WB|WBGene00011833	596	T19B10.5 [Caenorhabditis elega	0.195	0.065	0.564	6.4e-06

MGI|MGI:1929655 Cript "cysteine-rich PDZ-binding protein" [Mus musculus (taxid:10090)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 58/81 (71%), Positives = 68/81 (83%)

Query:    55 MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQ-KFESCKI 113
             MVC KCEKKLG+VITPD WK G+RNT ESGGR++ ENKALT+ KARF+PY + KF +C+I
Sbjct:     1 MVCEKCEKKLGRVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRI 60

Query:   114 CRQKVHQVGSHYCQACAYKKG 134
             C+  VHQ GSHYCQ CAYKKG
Sbjct:    61 CKSSVHQPGSHYCQGCAYKKG 81

GO:0005737 "cytoplasm" evidence=IEA

GO:0014069 "postsynaptic density" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0031122 "cytoplasmic microtubule organization" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043197 "dendritic spine" evidence=ISO

GO:0043198 "dendritic shaft" evidence=ISO

GO:0045184 "establishment of protein localization" evidence=ISO

GO:0045202 "synapse" evidence=IEA

RGD|621545 Cript "cysteine-rich PDZ-binding protein" [Rattus norvegicus (taxid:10116)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 58/81 (71%), Positives = 68/81 (83%)

Query:    55 MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQ-KFESCKI 113
             MVC KCEKKLG+VITPD WK G+RNT ESGGR++ ENKALT+ KARF+PY + KF +C+I
Sbjct:     1 MVCEKCEKKLGRVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRI 60

Query:   114 CRQKVHQVGSHYCQACAYKKG 134
             C+  VHQ GSHYCQ CAYKKG
Sbjct:    61 CKSSVHQPGSHYCQGCAYKKG 81

GO:0005737 "cytoplasm" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0031122 "cytoplasmic microtubule organization" evidence=IDA

GO:0032403 "protein complex binding" evidence=IPI

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043197 "dendritic spine" evidence=IDA

GO:0043198 "dendritic shaft" evidence=IDA

GO:0045184 "establishment of protein localization" evidence=IDA

UNIPROTKB|Q3ZC66 CRIPT "Cysteine-rich PDZ-binding protein" [Bos taurus (taxid:9913)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 58/81 (71%), Positives = 67/81 (82%)

Query:    55 MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQ-KFESCKI 113
             MVC KCEKKLG VITPD WK G+RNT ESGGR++ ENKALT+ KARF+PY + KF +C+I
Sbjct:     1 MVCEKCEKKLGTVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRI 60

Query:   114 CRQKVHQVGSHYCQACAYKKG 134
             C+  VHQ GSHYCQ CAYKKG
Sbjct:    61 CKSSVHQPGSHYCQGCAYKKG 81

GO:0045202 "synapse" evidence=IEA

GO:0043197 "dendritic spine" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

UNIPROTKB|Q9P021 CRIPT "Cysteine-rich PDZ-binding protein" [Homo sapiens (taxid:9606)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 58/81 (71%), Positives = 67/81 (82%)

Query:    55 MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQ-KFESCKI 113
             MVC KCEKKLG VITPD WK G+RNT ESGGR++ ENKALT+ KARF+PY + KF +C+I
Sbjct:     1 MVCEKCEKKLGTVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRI 60

Query:   114 CRQKVHQVGSHYCQACAYKKG 134
             C+  VHQ GSHYCQ CAYKKG
Sbjct:    61 CKSSVHQPGSHYCQGCAYKKG 81

GO:0030054 "cell junction" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IEA

GO:0031122 "cytoplasmic microtubule organization" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0043198 "dendritic shaft" evidence=IEA

GO:0045184 "establishment of protein localization" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5ZKB6 CRIPT "Cysteine-rich PDZ-binding protein" [Gallus gallus (taxid:9031)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 57/81 (70%), Positives = 66/81 (81%)

Query:    55 MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQ-KFESCKI 113
             MVC KCE+KLG VITPD WK G+RNT ESGGR++ ENKALT+ KARF+PY + KF  C+I
Sbjct:     1 MVCEKCERKLGTVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFAICRI 60

Query:   114 CRQKVHQVGSHYCQACAYKKG 134
             C+  VHQ GSHYCQ CAYKKG
Sbjct:    61 CKSSVHQPGSHYCQGCAYKKG 81

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-050417-451 cript "cysteine-rich PDZ-binding protein" [Danio rerio (taxid:7955)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 56/81 (69%), Positives = 66/81 (81%)

Query:    55 MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQK-FESCKI 113
             MVC KCEKKLG+VITPD WK G+RNT ESGGR++ ENK LT+ KARF+PY +  F +C+I
Sbjct:     1 MVCEKCEKKLGRVITPDTWKDGARNTTESGGRKLNENKMLTSKKARFDPYGKSGFATCRI 60

Query:   114 CRQKVHQVGSHYCQACAYKKG 134
             C+  VHQ GSHYCQ CAYKKG
Sbjct:    61 CKSSVHQSGSHYCQGCAYKKG 81

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

TAIR|locus:2195738 AT1G61780 "AT1G61780" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 47/80 (58%), Positives = 55/80 (68%)

Query:    55 MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKIC 114
             MVC KCEKKL KVI PD WK G+RN  E GGR+I ENK L+  K R++PY+     C IC
Sbjct:     1 MVCDKCEKKLSKVIVPDKWKDGARNVTEGGGRKINENKLLS-KKNRWSPYSTCTTKCMIC 59

Query:   115 RQKVHQVGSHYCQACAYKKG 134
             +Q+VHQ G  YC  CAY KG
Sbjct:    60 KQQVHQDGK-YCHTCAYSKG 78

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

WB|WBGene00044614 C36B1.14 [Caenorhabditis elegans (taxid:6239)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 32/82 (39%), Positives = 44/82 (53%)

Query:    55 MVCSKCEKKLGKVITPDNW--KSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCK 112
             MVC  CEKKL K++  D +  K  +RN   SG + +     L   + +      K   CK
Sbjct:     1 MVCGDCEKKLTKIVGVDPYRNKKVNRNADGSGPKTVTTKNRLIGVQKKATIVGAK---CK 57

Query:   113 ICRQKVHQVGSHYCQACAYKKG 134
             +C+  +HQ GSHYC  CAY+KG
Sbjct:    58 LCKMLIHQPGSHYCSTCAYQKG 79

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0001703 "gastrulation with mouth forming first" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0032502 "developmental process" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

ASPGD|ASPL0000067618 AN7283 [Emericella nidulans (taxid:162425)]

 Score = 109 (43.4 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 24/57 (42%), Positives = 32/57 (56%)

Query:    77 SRNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGSHYCQACAYKK 133
             +R     G   + +NK L+A KA+ NPY     SC +C+ K  Q G  YCQ CAY+K
Sbjct:    53 NRTKATLGNTGVSKNKLLSA-KAK-NPYAAYSSSCDMCKAKTEQ-GRKYCQRCAYQK 106

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

WB|WBGene00011833 T19B10.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 128 (50.1 bits), Expect = 6.4e-06, P = 6.4e-06
 Identities = 22/39 (56%), Positives = 35/39 (89%)

Query:    13 GDRITSVRISFRHMVYEDALTILSYASPYEVQIETEKEI 51
             GD+I S+ I+F +MVYEDA+T+LSY+SPY+V++E E+++
Sbjct:   171 GDKIKSLTINFENMVYEDAVTLLSYSSPYKVKLELERKL 209


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      199       199   0.00085  111 3  11 22  0.49    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  185 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.31u 0.12s 19.43t   Elapsed:  00:00:20
  Total cpu time:  19.31u 0.12s 19.43t   Elapsed:  00:00:20
  Start:  Thu Aug 15 13:28:40 2013   End:  Thu Aug 15 13:29:00 2013

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZKB6	CRIPT_CHICK	No assigned EC number	0.7037	0.4020	0.7920	yes	N/A
Q3ZC66	CRIPT_BOVIN	No assigned EC number	0.7160	0.4020	0.7920	yes	N/A
O70333	CRIPT_MOUSE	No assigned EC number	0.7160	0.4020	0.7920	yes	N/A
Q792Q4	CRIPT_RAT	No assigned EC number	0.7160	0.4020	0.7920	yes	N/A
Q567Z6	CRIPT_DANRE	No assigned EC number	0.6913	0.4020	0.7920	yes	N/A
Q9P021	CRIPT_HUMAN	No assigned EC number	0.7160	0.4020	0.7920	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	199
pfam10235	89	pfam10235, Cript, Microtubule-associated protein C	2e-29

>gnl|CDD|220641 pfam10235, Cript, Microtubule-associated protein CRIPT

 Score =  104 bits (260), Expect = 2e-29
 Identities = 42/70 (60%), Positives = 49/70 (70%), Gaps = 1/70 (1%)

Query: 65  GKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGSH 124
            K+ TPD WK G+RNT   GGR+I +NK L+  KA+ NPY Q    CKIC+ KVHQ GS 
Sbjct: 1   TKLATPDVWKKGARNTATLGGRKINKNKLLS-KKAKRNPYAQYSSKCKICKTKVHQKGSK 59

Query: 125 YCQACAYKKG 134
           YCQ CAYKKG
Sbjct: 60  YCQRCAYKKG 69

The CRIPT protein is a cytoskeletal protein involved in microtubule production. The C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners. SAP90 is concentrated in the post synaptic density of glutamatergic neurons. Length = 89

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
KOG3476|consensus	100		100.0
PF10235	90	Cript: Microtubule-associated protein CRIPT; Inter	100.0
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	95.71
PF10217	92	DUF2039: Uncharacterized conserved protein (DUF203	94.71
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	92.27
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	90.92
KOG3241|consensus	227		90.04
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	89.89
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	89.6
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	89.09
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	88.67
COG5152	259	Uncharacterized conserved protein, contains RING a	87.91
PF12773	50	DZR: Double zinc ribbon	87.67
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	85.89
KOG3580|consensus	1027		85.7
KOG3571|consensus	626		84.4
PRK14559	645	putative protein serine/threonine phosphatase; Pro	84.25
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	83.04

>KOG3476|consensus

Probab=100.00  E-value=2.8e-46  Score=287.38  Aligned_cols=91  Identities=58%  Similarity=1.012  Sum_probs=87.5

Q ss_pred             hhhhhhhcccCcccccCCCCCCCcccccCCCcccccccchhhhhhccCCCcccCcccchhhcccccCCCcCCcccccccC
Q psy11904         55 MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGSHYCQACAYKKG  134 (199)
Q Consensus        55 MVC~KCEKKL~KLaTPD~wK~Gs~nt~~~ggRkIgeNKLLSs~K~R~nPY~~~~skCkiCK~kVhQ~G~kYCQ~CAYkKG  134 (199)
                      |||+||||||+++++|||||+|+||++++|+|+|+|||.|.+.++||+||+..+.+|+|||+.|||+|+||||.|||+||
T Consensus         1 MVC~kCEkKLskvi~pd~wr~garn~~~sGgrkinenkaL~s~k~r~~p~gt~~~kC~iCk~~vHQ~GshYC~tCAY~Kg   80 (100)
T KOG3476|consen    1 MVCEKCEKKLSKVIGPDPWRDGARNTTESGGRKINENKALISKKKRATPYGTALAKCRICKQLVHQPGSHYCQTCAYKKG   80 (100)
T ss_pred             CchhHHHHHhccccccCcccccccccCCCCCeecchhhhhhhhhhhcCccccccchhHHHHHHhcCCcchhHhHhhhhhh
Confidence            99999999999999999999999999999999999999888889999999999999999999999999999999999999


Q ss_pred             CcccCCCCCCC
Q psy11904        135 EHLVLVTADPE  145 (199)
Q Consensus       135 iCAMCGk~~~~  145 (199)
                      |||||||..-.
T Consensus        81 iCAMCGKki~n   91 (100)
T KOG3476|consen   81 ICAMCGKKILN   91 (100)
T ss_pred             HHHHhhhHhhc
Confidence            99999997543

>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production

Probab=100.00  E-value=1.3e-38  Score=242.25  Aligned_cols=79  Identities=53%  Similarity=0.933  Sum_probs=74.0

Q ss_pred             CcccccCCCCCCC--cccccCCCcccccccchhhhhhccCCCcccCcccchhhcccccCCCcCCcccccccCCcccCCCC
Q psy11904         65 GKVITPDNWKSGS--RNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGSHYCQACAYKKGEHLVLVTA  142 (199)
Q Consensus        65 ~KLaTPD~wK~Gs--~nt~~~ggRkIgeNKLLSs~K~R~nPY~~~~skCkiCK~kVhQ~G~kYCQ~CAYkKGiCAMCGk~  142 (199)
                      ++||||||||+|+  +++.++|+|+||||||||++ ++ |||++++++|++||++|||+|+||||.|||++||||||||.
T Consensus         1 tklatPd~~k~~~~~~~~~~~g~r~i~eNKlLs~~-~~-nPy~~~~~~C~~CK~~v~q~g~~YCq~CAYkkGiCamCGKk   78 (90)
T PF10235_consen    1 TKLATPDPWKKGAMYRNTAESGGRKIGENKLLSKK-KK-NPYAPYSSKCKICKTKVHQPGAKYCQTCAYKKGICAMCGKK   78 (90)
T ss_pred             CccccCCccccCcccccccCCCCccccceeeeccc-cc-CcccccCccccccccccccCCCccChhhhcccCcccccCCe
Confidence            4899999999999  99999999999999999874 34 99999999999999999999999999999999999999999


Q ss_pred             CCC
Q psy11904        143 DPE  145 (199)
Q Consensus       143 ~~~  145 (199)
                      +..
T Consensus        79 i~d   81 (90)
T PF10235_consen   79 ILD   81 (90)
T ss_pred             ecc
Confidence            844

This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=95.71  E-value=0.013  Score=40.77  Aligned_cols=44  Identities=30%  Similarity=0.369  Sum_probs=35.6

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEE
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIET   47 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l   47 (199)
                      |||++.+ |++||+|+++ -...+++..+++..+|+-+.. .|.+.+
T Consensus        36 ~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~-~v~L~V   80 (81)
T PF00595_consen   36 SPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASN-PVTLTV   80 (81)
T ss_dssp             SHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTS-EEEEEE
T ss_pred             ChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCC-cEEEEE
Confidence            6788888 9999999995 245677889999999988887 666655

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues

Probab=94.71  E-value=0.0044  Score=48.15  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=31.2

Q ss_pred             Ccccchhhc-ccccCCCcCCcccccccCCcccCCCC
Q psy11904        108 FESCKICRQ-KVHQVGSHYCQACAYKKGEHLVLVTA  142 (199)
Q Consensus       108 ~skCkiCK~-kVhQ~G~kYCQ~CAYkKGiCAMCGk~  142 (199)
                      .++|-.|.+ +|.+.=|..|+.||-..++||.||++
T Consensus        55 p~kC~~C~qktVk~AYh~iC~~Ca~~~~vCaKC~k~   90 (92)
T PF10217_consen   55 PKKCNKCQQKTVKHAYHVICDPCAKELKVCAKCGKP   90 (92)
T ss_pred             CccccccccchHHHHHHHHHHHHHHhhccCcccCCC
Confidence            469999997 67777788999999999999999986

The region is conserved from plants to humans but its function is unknown.

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=92.27  E-value=0.25  Score=33.57  Aligned_cols=43  Identities=28%  Similarity=0.410  Sum_probs=29.5

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEE
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIE   46 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~   46 (199)
                      |||++ ..|++||+|+++- ..+.++.++|++.+|+.+.+ .+.+.
T Consensus        37 s~a~~-~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~-~v~l~   80 (82)
T cd00992          37 GPAER-GGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGD-EVTLT   80 (82)
T ss_pred             ChHHh-CCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCC-eEEEE
Confidence            56555 6799999999932 22333468888999988765 55544

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=90.92  E-value=0.54  Score=31.64  Aligned_cols=44  Identities=23%  Similarity=0.242  Sum_probs=28.5

Q ss_pred             CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+ |++||+|++  |.-.   +...++.+.++..+.. .+.+.+.|
T Consensus        37 s~a~~~g-l~~GD~I~~--In~~~v~~~~~~~~~~~~~~~~~-~~~l~i~r   83 (85)
T smart00228       37 SPAAKAG-LKVGDVILE--VNGTSVEGLTHLEAVDLLKKAGG-KVTLTVLR   83 (85)
T ss_pred             CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHhCCC-eEEEEEEe
Confidence            6777878 999999988  4333   2334555666665533 66666655

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>KOG3241|consensus

Probab=90.04  E-value=0.021  Score=50.11  Aligned_cols=57  Identities=18%  Similarity=0.424  Sum_probs=42.6

Q ss_pred             ccCCCcccCcccchhhc-ccccCCCcCCcccccccCCcccCCCCCCC--CCCcceeeecce
Q psy11904        100 RFNPYTQKFESCKICRQ-KVHQVGSHYCQACAYKKGEHLVLVTADPE--KGDKFALISGEH  157 (199)
Q Consensus       100 R~nPY~~~~skCkiCK~-kVhQ~G~kYCQ~CAYkKGiCAMCGk~~~~--~~~~~~~i~g~~  157 (199)
                      +|.|.++ ..+|..|++ .|.|.-|+.|..||-...+||-|+|+..+  -.+-+|+-.-|+
T Consensus        60 KYKpLt~-akkC~kC~~r~Vk~aYH~~Cr~CA~e~~vCAKC~ks~~~i~i~d~~p~~~E~~  119 (227)
T KOG3241|consen   60 KYKPLTE-AKKCQKCTKRNVKQAYHKLCRGCAKEQKVCAKCCKSVDQILIRDIYPVEAEQK  119 (227)
T ss_pred             cccccch-hHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhccHHHhhhcCCCCCcHHHH
Confidence            3445543 469999987 78888889999999999999999998766  334445544443

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=89.89  E-value=0.38  Score=33.78  Aligned_cols=45  Identities=31%  Similarity=0.350  Sum_probs=29.4

Q ss_pred             CccccccccCCCCeeeEEEEeeccc-chhhHHhhhhcccc-ceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM-VYEDALTILSYASP-YEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~-~yEDAl~iL~~a~P-Ykv~~~l~r   49 (199)
                      |||++.+ |++||.|++  |....+ ..+|...+|+..+| =.|.+.+.|
T Consensus        25 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~l~~~~~g~~v~l~v~R   71 (82)
T PF13180_consen   25 SPAAKAG-LQPGDIILA--INGKPVNSSEDLVNILSKGKPGDTVTLTVLR   71 (82)
T ss_dssp             SHHHHTT-S-TTEEEEE--ETTEESSSHHHHHHHHHCSSTTSEEEEEEEE
T ss_pred             CcHHHCC-CCCCcEEEE--ECCEEcCCHHHHHHHHHhCCCCCEEEEEEEE
Confidence            7888888 999999998  544444 23555666654444 456777766

...

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=89.60  E-value=0.66  Score=31.99  Aligned_cols=46  Identities=22%  Similarity=0.274  Sum_probs=31.5

Q ss_pred             CccccccccCCCCeeeEEEEeecccch---hhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHMVY---EDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~~y---EDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++. -|++||+|++  |....+..   +|...+|+......+.+.+.|.
T Consensus        24 s~a~~~-gl~~GD~I~~--vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~   72 (85)
T cd00988          24 SPAAKA-GIKAGDIIVA--IDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG   72 (85)
T ss_pred             CCHHHc-CCCCCCEEEE--ECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence            566665 7999999999  55544443   5667777665556777777753

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=89.09  E-value=0.87  Score=31.57  Aligned_cols=44  Identities=16%  Similarity=0.237  Sum_probs=28.4

Q ss_pred             CccccccccCCCCeeeEEEEeecccc-hhhHHhhhhccc-cceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHMV-YEDALTILSYAS-PYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~-PYkv~~~l~r   49 (199)
                      |||++ + |++||+|++  |....+. .+|...+|+... .-.+.+.+.|
T Consensus        19 s~A~~-g-L~~GD~I~~--Ing~~v~~~~~~~~~l~~~~~~~~v~l~v~r   64 (79)
T cd00986          19 MPAAG-K-LKAGDHIIA--VDGKPFKEAEELIDYIQSKKEGDTVKLKVKR   64 (79)
T ss_pred             Cchhh-C-CCCCCEEEE--ECCEECCCHHHHHHHHHhCCCCCEEEEEEEE
Confidence            56665 5 999999999  6665555 355556666432 2356666655

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=88.67  E-value=0.91  Score=31.03  Aligned_cols=43  Identities=14%  Similarity=0.105  Sum_probs=24.8

Q ss_pred             CccccccccCCCCeeeEEEEeecccchhhHHhhhhcc-ccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHMVYEDALTILSYA-SPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~~yEDAl~iL~~a-~PYkv~~~l~r   49 (199)
                      |||++.+ |++||+|++  |  ++....+...+|+.. ..-.+.+.+.|
T Consensus        23 s~a~~aG-l~~GD~I~~--I--ng~~v~~~~~~l~~~~~~~~v~l~v~r   66 (80)
T cd00990          23 SPADKAG-LVAGDELVA--V--NGWRVDALQDRLKEYQAGDPVELTVFR   66 (80)
T ss_pred             ChHHHhC-CCCCCEEEE--E--CCEEhHHHHHHHHhcCCCCEEEEEEEE
Confidence            5666655 999999999  4  344433333344443 22356666654

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=87.91  E-value=0.14  Score=45.85  Aligned_cols=34  Identities=38%  Similarity=0.810  Sum_probs=27.0

Q ss_pred             ccchhhccc-----ccCCCcCCcccc---cccC-CcccCCCCC
Q psy11904        110 SCKICRQKV-----HQVGSHYCQACA---YKKG-EHLVLVTAD  143 (199)
Q Consensus       110 kCkiCK~kV-----hQ~G~kYCQ~CA---YkKG-iCAMCGk~~  143 (199)
                      .|.|||..-     ..-||++|..||   |++| .|-+||+.-
T Consensus       198 ~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t  240 (259)
T COG5152         198 LCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKAT  240 (259)
T ss_pred             eehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence            899999753     344999999998   5555 699999853

>PF12773 DZR: Double zinc ribbon

Probab=87.67  E-value=0.38  Score=31.54  Aligned_cols=34  Identities=15%  Similarity=0.354  Sum_probs=22.3

Q ss_pred             cchhhcccccCCCcCCcccccccC-------CcccCCCCCCC
Q psy11904        111 CKICRQKVHQVGSHYCQACAYKKG-------EHLVLVTADPE  145 (199)
Q Consensus       111 CkiCK~kVhQ~G~kYCQ~CAYkKG-------iCAMCGk~~~~  145 (199)
                      |..|.+.+.. ++.||..|-..-.       +|.-||..++.
T Consensus         1 Cp~Cg~~~~~-~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~   41 (50)
T PF12773_consen    1 CPHCGTPNPD-DAKFCPHCGTPLPPPDQSKKICPNCGAENPP   41 (50)
T ss_pred             CCCcCCcCCc-cccCChhhcCChhhccCCCCCCcCCcCCCcC
Confidence            5566666666 5677777755444       58888876554

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=85.89  E-value=1.4  Score=29.31  Aligned_cols=35  Identities=23%  Similarity=0.286  Sum_probs=24.9

Q ss_pred             CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccc
Q psy11904          2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYAS   39 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~   39 (199)
                      |||++ .-|++||+|++  |.-.   ++.++|+..+|+...
T Consensus        24 s~a~~-~gl~~GD~I~~--Ing~~v~~~~~~~~~~~l~~~~   61 (70)
T cd00136          24 SPAER-AGLQAGDVILA--VNGTDVKNLTLEDVAELLKKEV   61 (70)
T ss_pred             CHHHH-cCCCCCCEEEE--ECCEECCCCCHHHHHHHHhhCC
Confidence            56655 56999999999  4444   344478888888764

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>KOG3580|consensus

Probab=85.70  E-value=0.56  Score=47.79  Aligned_cols=57  Identities=32%  Similarity=0.458  Sum_probs=39.9

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHH-hhhhccccceEEEEE--eeehhhhhhhhh
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDAL-TILSYASPYEVQIET--EKEIYFIMVCSK   59 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl-~iL~~a~PYkv~~~l--~reIyf~MVC~K   59 (199)
                      |||+ .--|.|||||+.| +|.|+|++-|+|+ =+|.-----.|.+-.  +..||-+||-..
T Consensus       440 spA~-~eGlqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ~k~Dvyr~iv~s~  500 (1027)
T KOG3580|consen  440 SPAE-QEGLQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQSKADVYRDIVASG  500 (1027)
T ss_pred             Cchh-hccccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhhhhhHHHHHHHhcc
Confidence            4443 3458999999998 6999999999994 445443334455544  556888888653

>KOG3571|consensus

Probab=84.40  E-value=0.69  Score=45.92  Aligned_cols=45  Identities=24%  Similarity=0.394  Sum_probs=35.9

Q ss_pred             cccccccCCCCeeeEE-EEeecccchhhHHhhhhc--cccceEEEEEe
Q psy11904          4 CAETWALNNGDRITSV-RISFRHMVYEDALTILSY--ASPYEVQIETE   48 (199)
Q Consensus         4 a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~--a~PYkv~~~l~   48 (199)
                      -|.-++|.+||+|+-| .|+|+||.+.||+..|.-  +.|+-+++.+-
T Consensus       290 VA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvA  337 (626)
T KOG3571|consen  290 VALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVA  337 (626)
T ss_pred             eeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEe
Confidence            3556899999999987 599999999999998864  35676665553

>PRK14559 putative protein serine/threonine phosphatase; Provisional

Probab=84.25  E-value=0.73  Score=45.72  Aligned_cols=37  Identities=19%  Similarity=0.331  Sum_probs=30.5

Q ss_pred             cccchhhcccccCCCcCCccccccc--CCcccCCCCCCCC
Q psy11904        109 ESCKICRQKVHQVGSHYCQACAYKK--GEHLVLVTADPEK  146 (199)
Q Consensus       109 skCkiCK~kVhQ~G~kYCQ~CAYkK--GiCAMCGk~~~~~  146 (199)
                      ..|..|...+.. +++||+.|-.+-  ..|.-||..++..
T Consensus         2 ~~Cp~Cg~~n~~-~akFC~~CG~~l~~~~Cp~CG~~~~~~   40 (645)
T PRK14559          2 LICPQCQFENPN-NNRFCQKCGTSLTHKPCPQCGTEVPVD   40 (645)
T ss_pred             CcCCCCCCcCCC-CCccccccCCCCCCCcCCCCCCCCCcc
Confidence            479999999877 899999997763  4799999988764

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=83.04  E-value=2.5  Score=28.61  Aligned_cols=45  Identities=24%  Similarity=0.382  Sum_probs=25.6

Q ss_pred             CccccccccCCCCeeeEEEEeecccc-hhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHMV-YEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++. -|++||+|.+  |....+. .+|...+|+....=.+.+.+.|
T Consensus        23 s~a~~~-gl~~GD~I~~--ing~~i~~~~~~~~~l~~~~~~~~~l~v~r   68 (79)
T cd00989          23 SPAAKA-GLKAGDRILA--INGQKIKSWEDLVDAVQENPGKPLTLTVER   68 (79)
T ss_pred             CHHHHc-CCCCCCEEEE--ECCEECCCHHHHHHHHHHCCCceEEEEEEE
Confidence            566554 4899999998  4444332 3455555554322245555554

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	199
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	96.9
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	96.61
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	96.6
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	96.46
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	96.43
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	96.38
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	96.34
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	96.33
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	96.33
4amh_A	106	Disks large homolog 1; permutation, protein foldin	96.26
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	96.25
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	96.21
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	96.2
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	96.19
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	96.18
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	96.18
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	96.16
2opg_A	98	Multiple PDZ domain protein; structural protein, s	96.15
2awx_A	105	Synapse associated protein 97; membrane protein, s	96.14
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	96.13
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	96.12
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	96.07
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	96.06
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	96.06
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	96.05
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	96.05
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	96.01
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	96.01
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	95.97
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	95.94
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	95.91
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	95.9
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	95.88
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	95.85
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	95.82
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	95.81
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	95.81
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	95.78
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	95.74
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	95.73
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	95.73
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	95.71
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	95.7
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	95.7
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	95.7
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	95.68
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	95.65
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	95.62
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	95.59
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	95.59
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	95.59
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	95.57
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	95.56
2fne_A	117	Multiple PDZ domain protein; structural protein, s	95.56
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	95.54
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	95.53
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	95.53
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	95.51
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	95.47
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	95.45
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	95.45
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	95.41
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	95.39
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	95.36
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	95.34
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	95.3
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	95.25
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	95.25
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	95.25
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	95.24
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	95.17
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	95.16
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	95.15
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	95.14
2ego_A	96	General receptor for phosphoinositides 1- associat	95.14
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	95.09
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	95.07
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	95.06
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	95.04
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	95.04
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	95.01
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	94.99
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	94.96
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	94.95
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	94.93
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	94.87
3khf_A	99	Microtubule-associated serine/threonine-protein ki	94.73
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	94.71
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	94.7
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	94.66
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	94.62
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	94.61
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	94.55
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	94.46
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	94.44
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	94.42
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	94.41
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	94.39
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	94.37
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	94.36
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	94.33
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	94.33
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	94.32
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	94.31
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	94.29
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	94.28
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	94.25
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	94.21
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	94.07
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	94.0
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	94.0
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	93.98
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	93.96
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	93.93
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	93.93
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	93.89
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	93.87
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	93.85
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	93.75
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	93.74
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	93.64
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	93.63
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	93.63
2d90_A	102	PDZ domain containing protein 1; structural genomi	93.53
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	93.48
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	93.45
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	93.44
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	93.36
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	93.35
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	93.35
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	93.33
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	93.28
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	92.98
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	92.96
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	92.91
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	92.83
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	92.77
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	92.49
2kl1_A	94	YLBL protein; structure genomics, structural genom	92.49
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	92.29
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	92.22
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	92.19
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	92.16
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	92.1
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	92.05
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	91.97
1m3v_A	122	FLIN4, fusion of the LIM interacting domain of LDB	91.95
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	91.88
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	91.43
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	91.37
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	90.89
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	90.88
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	90.72
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	90.28
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	90.22
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	89.98
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	89.25
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	89.65
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	88.68
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	88.05
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	87.85
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	87.43
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	87.41
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	87.15
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	86.96
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	86.89
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	86.8
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	86.61
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	86.3
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	85.71
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	85.03
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	84.83
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	84.69
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	84.51
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	84.12
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	83.86
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	83.3
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	81.81
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	81.73
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	81.53
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	81.48
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	81.32
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	81.08

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=96.90  E-value=0.00063  Score=49.23  Aligned_cols=49  Identities=22%  Similarity=0.373  Sum_probs=39.7

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhcc--ccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYA--SPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a--~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ..++++..+|++.+|+.+  .+=.|.+.+.|.
T Consensus        44 spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~   95 (108)
T 3cbz_A           44 GAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKS   95 (108)
T ss_dssp             SHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECC
T ss_pred             ChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccCCCeEEEEEEeC
Confidence            7899999999999999942 355666779999999887  556699988764

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=96.61  E-value=0.0017  Score=45.35  Aligned_cols=49  Identities=16%  Similarity=0.265  Sum_probs=38.9

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeeeh
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKEI   51 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~reI   51 (199)
                      |||++.+.|++||+|+++. ...+++..+|+.++|+.+.. .|.+.+.+.-
T Consensus        32 spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~-~v~L~v~~~~   81 (88)
T 3e17_A           32 GLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRG-KLQLVVLRDL   81 (88)
T ss_dssp             SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTT-EEEEEECCC-
T ss_pred             CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-eEEEEEeCCC
Confidence            7899999999999999942 34556789999999997655 8888877543

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=96.60  E-value=0.0012  Score=47.81  Aligned_cols=48  Identities=17%  Similarity=0.165  Sum_probs=37.4

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhcc----ccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYA----SPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a----~PYkv~~~l~r   49 (199)
                      |||++.+.|++||+|+++- ..++++.++||+.+|+.+    +.=.+.|.+.|
T Consensus        43 s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~r   95 (103)
T 1ufx_A           43 GSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTE   95 (103)
T ss_dssp             SHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEECC
T ss_pred             ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCCCeEEEEEEE
Confidence            6889999999999999954 556678899999999876    33345565554

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=96.46  E-value=0.0018  Score=44.43  Aligned_cols=49  Identities=14%  Similarity=0.171  Sum_probs=37.5

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccc-eEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPY-EVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PY-kv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ...+++..+|++.+|..+.+- .|.+.+.|.
T Consensus        38 spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~v~R~   88 (90)
T 2q9v_A           38 GAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQT   88 (90)
T ss_dssp             SHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred             ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEec
Confidence            7899999999999999932 233445678899988877654 688888764

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=96.43  E-value=0.0028  Score=45.52  Aligned_cols=48  Identities=21%  Similarity=0.193  Sum_probs=39.3

Q ss_pred             CccccccccCCCCeeeEEEEeecc---cchhhHHhhhhccccceEEEEEeeeh
Q psy11904          2 SHCAETWALNNGDRITSVRISFRH---MVYEDALTILSYASPYEVQIETEKEI   51 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n---~~yEDAl~iL~~a~PYkv~~~l~reI   51 (199)
                      |||++.+.|++||+|++  |...+   +.++|++.+|+.+..-.|.+.+.|..
T Consensus        55 spA~~aG~L~~GD~Il~--Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~R~~  105 (108)
T 2d92_A           55 GVAERSGGLLPGDRLVS--VNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP  105 (108)
T ss_dssp             CHHHHHTCCCTTCEEEE--ESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECCC
T ss_pred             CHHHHCCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCC
Confidence            78889999999999999  66554   45899999998875558999988754

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=96.38  E-value=0.0033  Score=46.30  Aligned_cols=46  Identities=17%  Similarity=0.291  Sum_probs=38.3

Q ss_pred             CccccccccCCCCeeeEEEEeec----ccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFR----HMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~----n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|++  |...    ++.++|++.+|+. ..-.|.|.+.|.
T Consensus        65 spA~~aG~L~~GD~Il~--ing~~v~~~~~~~~~~~~l~~-~~~~v~l~v~r~  114 (128)
T 2db5_A           65 SVADRDQRLKENDQILA--INHTPLDQNISHQQAIALLQQ-TTGSLRLIVARE  114 (128)
T ss_dssp             SHHHHTCCCCSSCBEEE--ESSCBCSTTSCHHHHHHHHHH-CCSEEEEEEEEC
T ss_pred             CHHHHcCCCCCCCEEEE--ECCEECCCCCCHHHHHHHHHc-CCCeEEEEEEcC
Confidence            78999999999999999  6654    4569999999987 457889998876

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=96.34  E-value=0.0028  Score=46.23  Aligned_cols=48  Identities=21%  Similarity=0.263  Sum_probs=37.0

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ...+++.+++++.+|+.+ .=.|.+.++|.
T Consensus        60 s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~  108 (117)
T 1ujd_A           60 GSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQ-SGEAEICVRLD  108 (117)
T ss_dssp             CHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCC-SSCEEEEEESS
T ss_pred             CHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcC-CCEEEEEEEEC
Confidence            7899999999999999943 344455679999999874 44688888764

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=96.33  E-value=0.0019  Score=47.03  Aligned_cols=49  Identities=22%  Similarity=0.342  Sum_probs=36.3

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccc---cceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYAS---PYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~---PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ..++++.+++++.+|+.+.   -=.+.+.+.|.
T Consensus        52 s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R~  104 (109)
T 1wi4_A           52 GDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRS  104 (109)
T ss_dssp             SHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEECC
T ss_pred             ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEEEEeC
Confidence            7899999999999999942 3344556899999998776   34555665553

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=96.33  E-value=0.0039  Score=42.94  Aligned_cols=48  Identities=23%  Similarity=0.299  Sum_probs=35.6

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ...+++..++++.+|+.+.. .|.+.+.|.
T Consensus        44 spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~-~v~l~v~R~   92 (94)
T 2fe5_A           44 GAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSD-MVYLKVAKP   92 (94)
T ss_dssp             SHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCS-EEEEEEECC
T ss_pred             ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-eEEEEEEcC
Confidence            7888888899999999942 33444556888888876654 788887763

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=96.26  E-value=0.004  Score=44.79  Aligned_cols=48  Identities=23%  Similarity=0.322  Sum_probs=37.8

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ...+++..++++.+|+.+.- .|.+.+.|.
T Consensus        43 spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~-~v~l~v~R~   91 (106)
T 4amh_A           43 GAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSD-FVYLKVAKP   91 (106)
T ss_dssp             SHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCS-EEEEEEECC
T ss_pred             CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCC-eEEEEEEeC
Confidence            7899999999999999942 33455668899988877644 889998874

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=96.25  E-value=0.0045  Score=43.97  Aligned_cols=50  Identities=14%  Similarity=0.224  Sum_probs=38.3

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccc-cceEEEEEeeeh
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYAS-PYEVQIETEKEI   51 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~-PYkv~~~l~reI   51 (199)
                      |||++.+.|++||+|+++- ..++++.++|++.+|+.+. --.|.+.+.|..
T Consensus        45 spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~   96 (103)
T 1uep_A           45 GSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKV   96 (103)
T ss_dssp             STTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             ChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEEEEeCC
Confidence            7899999999999999931 2344456789999998764 357888888764

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=96.21  E-value=0.0036  Score=44.49  Aligned_cols=48  Identities=21%  Similarity=0.333  Sum_probs=36.7

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ...+++.+++++.+|+.+ .-.|.+.+.|.
T Consensus        49 spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~   97 (105)
T 1wha_A           49 GAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA-SPTIALLLERE   97 (105)
T ss_dssp             SSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC-CSCEEEEEEEC
T ss_pred             CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence            7888999999999999942 334455578899998865 55688888764

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=96.20  E-value=0.0042  Score=46.17  Aligned_cols=48  Identities=10%  Similarity=0.223  Sum_probs=38.7

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ...+++..+|++.+|+.+ .=.|.+.+.|.
T Consensus        64 spA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~-~~~v~L~v~R~  112 (118)
T 3b76_A           64 GVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRT-SSSIVLKALEV  112 (118)
T ss_dssp             SHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSC-CSEEEEEEEEE
T ss_pred             CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence            7899999999999999943 456667789999999876 44588888764

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=96.19  E-value=0.0037  Score=43.58  Aligned_cols=46  Identities=15%  Similarity=0.109  Sum_probs=37.1

Q ss_pred             CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++..-|++||+|++  |...   ++.++|+..+|+.+.. .|.+.+.|.
T Consensus        36 spA~~~agL~~GD~I~~--Ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~r~   84 (88)
T 1kwa_A           36 GMIHRQGTLHVGDEIRE--INGISVANQTVEQLQKMLREMRG-SITFKIVPS   84 (88)
T ss_dssp             SHHHHHTCCCTTCEEEE--ETTEEGGGSCHHHHHHHHHHCCE-EEEEEEECC
T ss_pred             CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHhcCCC-cEEEEEECC
Confidence            68888788999999999  5444   4468999999988766 888888764

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=96.18  E-value=0.0034  Score=46.78  Aligned_cols=50  Identities=12%  Similarity=0.070  Sum_probs=39.8

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhcc------ccceEEEEEeeeh
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYA------SPYEVQIETEKEI   51 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a------~PYkv~~~l~reI   51 (199)
                      |||++.+.|++||+|+++- +.++++.+++|+.+|+.+      ..=.|.+.+.|..
T Consensus        66 spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~  122 (127)
T 1wg6_A           66 GAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRS  122 (127)
T ss_dssp             SSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECS
T ss_pred             CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhccccCCCCEEEEEEEeCC
Confidence            7899999999999999954 556778889999999876      2346788887753

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=96.18  E-value=0.0054  Score=45.71  Aligned_cols=49  Identities=14%  Similarity=0.199  Sum_probs=39.4

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ..+.++.+++|+.+|+.+..-.|.+.++|.
T Consensus        68 s~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~  117 (130)
T 1i16_A           68 AASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRK  117 (130)
T ss_dssp             CCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEE
T ss_pred             CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEeC
Confidence            6888888999999999941 345556679999999988666789998875

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=96.16  E-value=0.0053  Score=42.56  Aligned_cols=48  Identities=21%  Similarity=0.274  Sum_probs=36.1

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ...+++..++++.+|+.+ .-.|.+.+.|.
T Consensus        44 spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~   92 (96)
T 1d5g_A           44 GAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT-GQVVHLLLEKG   92 (96)
T ss_dssp             SHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSC-CSEEEEEEECC
T ss_pred             ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEcC
Confidence            7888898899999999942 334445678999888764 35678887764

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=96.15  E-value=0.0055  Score=42.63  Aligned_cols=48  Identities=21%  Similarity=0.353  Sum_probs=35.8

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ..++++..++++.+++.+. -.|.+.+.|.
T Consensus        41 spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~R~   89 (98)
T 2opg_A           41 GAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTP-QRVRLTLYRD   89 (98)
T ss_dssp             SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SEEEEEEEEC
T ss_pred             ChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEcC
Confidence            7888988899999999942 3344555788888887654 5777877663

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=96.14  E-value=0.0051  Score=43.69  Aligned_cols=49  Identities=22%  Similarity=0.293  Sum_probs=37.7

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeeeh
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKEI   51 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~reI   51 (199)
                      |||++.+.|++||+|+++- ...+++..++++.++..+ .-.|.+.+.|.-
T Consensus        44 spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~   93 (105)
T 2awx_A           44 GAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNT-SDFVYLKVAKPT   93 (105)
T ss_dssp             SHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSC-CSEEEEEEECCC
T ss_pred             CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEcCC
Confidence            7889999999999999942 344556678888888765 577888887643

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=96.13  E-value=0.0054  Score=43.08  Aligned_cols=48  Identities=19%  Similarity=0.171  Sum_probs=36.6

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|+++ -..++++.++|++.+|+.+..-.|.+.+.|.
T Consensus        56 spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~  104 (104)
T 3sfj_A           56 GPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ  104 (104)
T ss_dssp             SHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEEEEEEEEC
T ss_pred             ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEcC
Confidence            7888888 9999999994 2345556688999999775446788887763

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=96.12  E-value=0.0054  Score=45.08  Aligned_cols=48  Identities=25%  Similarity=0.309  Sum_probs=37.4

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ...+++..++++.+|+.+ .-.|.+.+.|.
T Consensus        65 spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~  113 (117)
T 2byg_A           65 GAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNT-SEVVYLKVGKP  113 (117)
T ss_dssp             SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEEE
T ss_pred             CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeC
Confidence            7899999999999999942 334455689999999865 56788888764

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=96.07  E-value=0.0047  Score=42.86  Aligned_cols=49  Identities=14%  Similarity=0.202  Sum_probs=37.8

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeeeh
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKEI   51 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~reI   51 (199)
                      |||++.+.|++||+|+++- ...+++..+|+..+|+.+.- .|.+.+.+..
T Consensus        39 spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~~~~   88 (93)
T 3o46_A           39 GAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQG-AITFKIIPGS   88 (93)
T ss_dssp             SHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCE-EEEEEEECC-
T ss_pred             CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC-eEEEEEEeCC
Confidence            7899999999999999942 23444578999999977665 8888877643

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=96.06  E-value=0.0052  Score=42.93  Aligned_cols=46  Identities=24%  Similarity=0.347  Sum_probs=35.7

Q ss_pred             CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|++  |....+   .++|++.+|+ ...-.|.+.+.|.
T Consensus        41 spA~~aG~l~~GD~I~~--vng~~v~~~~~~~~~~~l~-~~g~~v~l~v~R~   89 (97)
T 1n7e_A           41 GLAERTGAIHIGDRILA--INSSSLKGKPLSEAIHLLQ-MAGETVTLKIKKQ   89 (97)
T ss_dssp             SHHHHHTCCCTTCEEEE--ETTEECTTCCHHHHHHHHH-TCCSEEEEEEECC
T ss_pred             CHHHHCCCCCCCCEEEE--ECCEECCCCCHHHHHHHHH-cCCCeEEEEEEeC
Confidence            78899988999999999  555444   5789999998 4445788888764

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=96.06  E-value=0.0056  Score=40.54  Aligned_cols=46  Identities=20%  Similarity=0.307  Sum_probs=34.6

Q ss_pred             CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|++  |...   ++..+|+..+|+...- .+.+.+.|.
T Consensus        32 s~A~~aG~l~~GD~I~~--ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~R~   80 (81)
T 2rcz_A           32 SLAARDGNIQEGDVVLK--INGTVTENMSLTDAKTLIERSKG-KLKMVVQRD   80 (81)
T ss_dssp             SHHHHHSSCCTTCEEEE--ETTEECTTCCHHHHHHHHHTSTT-EEEEEEEC-
T ss_pred             ChHHHCCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHCCCC-eEEEEEEeC
Confidence            67888888999999999  5443   4457888888886544 788887763

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=96.05  E-value=0.0064  Score=42.70  Aligned_cols=48  Identities=19%  Similarity=0.160  Sum_probs=36.7

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ...+++..++++.++..+ .-.|.+.+.|.
T Consensus        45 spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~   93 (102)
T 2i1n_A           45 GAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEA-GPVVRLVVRRR   93 (102)
T ss_dssp             SHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHS-CSEEEEEEEEE
T ss_pred             CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeC
Confidence            7889999999999999943 344556678888888763 46778887764

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=96.05  E-value=0.0059  Score=43.27  Aligned_cols=48  Identities=23%  Similarity=0.261  Sum_probs=36.2

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ...+++..++++.+++. ..-.|.+.+.|.
T Consensus        49 spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~   97 (106)
T 3axa_A           49 GAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR-TSSVVTLEVAKQ   97 (106)
T ss_dssp             SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEECC
T ss_pred             CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence            7899999999999999943 33445568889888865 455788887763

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=96.01  E-value=0.0067  Score=45.51  Aligned_cols=49  Identities=16%  Similarity=0.259  Sum_probs=38.1

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhcccc-ceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASP-YEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~P-Ykv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ..++++.++|+..+|+.+.| -.|.+.+.|.
T Consensus        76 spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~  126 (131)
T 1wfg_A           76 SLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRS  126 (131)
T ss_dssp             SHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEE
T ss_pred             ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcC
Confidence            7899999999999999932 33444567999999988744 6788888764

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=96.01  E-value=0.0056  Score=42.49  Aligned_cols=48  Identities=23%  Similarity=0.286  Sum_probs=37.4

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ....++.++|+..+|+. ..-.|.+.+.|.
T Consensus        43 spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~   91 (97)
T 2jil_A           43 GPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-CGQEAALLIEYD   91 (97)
T ss_dssp             SHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEEEE
T ss_pred             CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence            7899998999999999932 23445557999999987 566788888774

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=95.97  E-value=0.0078  Score=41.24  Aligned_cols=48  Identities=17%  Similarity=0.243  Sum_probs=35.7

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ....++..++++.+|.. ..-.|.+.+.|.
T Consensus        44 s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~   92 (97)
T 2iwn_A           44 SAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRH-TGQTVLLTLMRR   92 (97)
T ss_dssp             CHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHT-CCSEEEEEEEEE
T ss_pred             ChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence            6888888899999999942 33455567888888766 556788887764

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=95.94  E-value=0.0069  Score=43.44  Aligned_cols=48  Identities=25%  Similarity=0.333  Sum_probs=35.9

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++ -...+++..++++.+|+.+. -.|.+.+.|.
T Consensus        54 spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~  102 (116)
T 2dm8_A           54 GAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTP-QKVRLVVYRD  102 (116)
T ss_dssp             SHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCC-SEEEEEEECC
T ss_pred             ChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEeC
Confidence            688888889999999994 23344455789998887654 6778887753

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=95.91  E-value=0.0062  Score=45.32  Aligned_cols=48  Identities=25%  Similarity=0.304  Sum_probs=37.0

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ...+++..+|+..+|+.+.. .|.+.+.|.
T Consensus        70 spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~-~v~l~v~r~  118 (123)
T 2iwq_A           70 SPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGN-PVVFMVQSI  118 (123)
T ss_dssp             SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS-SEEEEEECC
T ss_pred             ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-eEEEEEEEC
Confidence            7899999999999999932 33445557999999987644 888888763

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.90  E-value=0.0073  Score=43.95  Aligned_cols=49  Identities=24%  Similarity=0.442  Sum_probs=38.2

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeeeh
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKEI   51 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~reI   51 (199)
                      |||++.+.|++||+|+++- ...+++..++++.+|+.+ .-.|.+.+.|.-
T Consensus        58 spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~~  107 (120)
T 2eno_A           58 GAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA-GYAVSLRVQHRL  107 (120)
T ss_dssp             SHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHH-CSEEEEEEEEEE
T ss_pred             ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCC
Confidence            7889999999999999953 455667778898888765 446888887753

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=95.88  E-value=0.0074  Score=42.30  Aligned_cols=48  Identities=25%  Similarity=0.299  Sum_probs=36.4

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++ -....++..+|+..+|+.+.- .|.+.+.|.
T Consensus        50 spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~r~   98 (103)
T 2fcf_A           50 SPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGN-PVVFMVQSI   98 (103)
T ss_dssp             SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCS-SEEEEEECC
T ss_pred             CcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC-cEEEEEEEC
Confidence            788888889999999993 123344557889999987644 888888764

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=95.85  E-value=0.0086  Score=42.37  Aligned_cols=48  Identities=10%  Similarity=0.147  Sum_probs=36.3

Q ss_pred             Ccccccc-ccCCCCeeeEE-EEeecccchhhHHhhhhcccc---ceEEEEEee
Q psy11904          2 SHCAETW-ALNNGDRITSV-RISFRHMVYEDALTILSYASP---YEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~-~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~P---Ykv~~~l~r   49 (199)
                      |||++.+ +|++||+|+++ -....++..++++.+|+.+..   -.|.+.++|
T Consensus        54 spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~v~r  106 (107)
T 3nfk_A           54 TPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRP  106 (107)
T ss_dssp             SHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEEEEC
T ss_pred             CchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEEEEEEc
Confidence            7889998 59999999994 234455677888888887653   367787776

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=95.82  E-value=0.0087  Score=42.59  Aligned_cols=48  Identities=21%  Similarity=0.189  Sum_probs=36.4

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ..++++..++++.+|..+ .-.|.+.+.|.
T Consensus        51 spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~   99 (107)
T 1wf8_A           51 GAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNT-KGNVRFVIGRE   99 (107)
T ss_dssp             CHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHC-CSEEEEEEEEE
T ss_pred             CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CCeEEEEEEeC
Confidence            7899999999999999932 233445678888888764 56788888775

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=95.81  E-value=0.012  Score=41.63  Aligned_cols=46  Identities=20%  Similarity=0.202  Sum_probs=37.0

Q ss_pred             CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhcc-ccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYA-SPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a-~PYkv~~~l~r   49 (199)
                      |||++...|++||+|++  |....+   .++|+..+|+.+ ..=.|.+.+.|
T Consensus        48 spA~~~ggl~~GD~I~~--Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R   97 (101)
T 2yt7_A           48 GPAERSGALSIGDRLTA--INGTSLVGLPLAACQAAVRETKSQTSVTLSIVH   97 (101)
T ss_dssp             STTGGGSSCCTTCEEEE--ESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECC
T ss_pred             CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEe
Confidence            68888889999999999  777766   789999999875 33467777765

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=95.81  E-value=0.0083  Score=40.69  Aligned_cols=46  Identities=17%  Similarity=0.159  Sum_probs=34.1

Q ss_pred             CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccc-eEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPY-EVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PY-kv~~~l~r   49 (199)
                      |||++.+.|++||+|++  |....+   ..+|+..+|+.+.|- .|.+.+.|
T Consensus        36 spA~~aG~l~~GD~I~~--vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R   85 (85)
T 2i04_A           36 GPAALDGKMETGDVIVS--VNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR   85 (85)
T ss_dssp             SHHHHHCCCCTTCEEEE--ETTEECTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred             ChHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence            78888888999999999  655544   468888898876433 46666543

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=95.78  E-value=0.01  Score=41.57  Aligned_cols=48  Identities=25%  Similarity=0.432  Sum_probs=35.6

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ...+++..++++.+|+.+ .-.|.+.+.|.
T Consensus        48 spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~   96 (101)
T 2jik_A           48 GAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA-GYAVSLRVQHR   96 (101)
T ss_dssp             SHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTC-CSEEEEEEEEE
T ss_pred             CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEeC
Confidence            7888888899999999942 334445568888888764 34688888764

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=95.74  E-value=0.0092  Score=40.75  Aligned_cols=48  Identities=17%  Similarity=0.297  Sum_probs=35.1

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ...+++..+|+..+|+.... .|.+.+.|.
T Consensus        34 s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~r~   82 (92)
T 3cyy_A           34 SLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKG-KLKMVVQRD   82 (92)
T ss_dssp             CHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTT-EEEEEEEC-
T ss_pred             ChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-cEEEEEEeC
Confidence            6888888899999999931 23344567888888877554 788888764

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=95.73  E-value=0.0084  Score=43.30  Aligned_cols=48  Identities=23%  Similarity=0.275  Sum_probs=35.9

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++ -..++++.+++++.+|..+ .-.|.+.+.|.
T Consensus        61 spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~r~  109 (117)
T 2ehr_A           61 SPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNA-GNPVVFIVQSL  109 (117)
T ss_dssp             STTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHHTS-CSSEEEEECCB
T ss_pred             ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence            789999999999999994 1234455688888888763 56777777653

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=95.73  E-value=0.0094  Score=40.96  Aligned_cols=48  Identities=21%  Similarity=0.199  Sum_probs=35.9

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ...+++..+++..+++.+ .-.|.+.+.|.
T Consensus        40 spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~   88 (92)
T 2qg1_A           40 GIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCS-LGTVTLEVGRI   88 (92)
T ss_dssp             SHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHC-CSEEEEEEECC
T ss_pred             CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEcc
Confidence            7899999999999999942 234455668888888764 34588888765

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=95.71  E-value=0.0065  Score=44.62  Aligned_cols=48  Identities=15%  Similarity=0.238  Sum_probs=38.0

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ..++++.++|+..+|+. ..-.|.+.+.|.
T Consensus        57 spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~  105 (129)
T 2dmz_A           57 SAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRN-AGQVVHLTLVRR  105 (129)
T ss_dssp             SHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHH-CCSSEEEEEEEE
T ss_pred             CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence            7888999999999999942 33556667999999988 666788888764

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=95.70  E-value=0.0092  Score=42.98  Aligned_cols=48  Identities=21%  Similarity=0.251  Sum_probs=36.6

Q ss_pred             CccccccccCCCCeeeEE-EEeec-ccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFR-HMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~-n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++ -...+ ++..+|++.+|+.+ .-.|.+.+.|.
T Consensus        60 spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~-~~~v~l~v~R~  109 (117)
T 2o2t_A           60 SVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKA-KDTVQLVIARG  109 (117)
T ss_dssp             SHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHC-CSEEEEEEESS
T ss_pred             CHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcC-CCEEEEEEEeC
Confidence            789999999999999993 12333 55789999988764 45788888764

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.70  E-value=0.0086  Score=42.18  Aligned_cols=48  Identities=10%  Similarity=0.113  Sum_probs=34.8

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ...+++.+++++.+|+. ..-.|.+.+.|.
T Consensus        49 spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~   97 (104)
T 2djt_A           49 GPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRA-GGPQLHLVIRRP   97 (104)
T ss_dssp             CHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHH-TCSEEEEEECCC
T ss_pred             CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence            6888888899999999942 33444556888888876 345677777653

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=95.70  E-value=0.0099  Score=44.10  Aligned_cols=47  Identities=17%  Similarity=0.142  Sum_probs=37.7

Q ss_pred             CccccccccCCCCeeeEEEEeecc---cchhhHHhhhhcccc-ceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRH---MVYEDALTILSYASP-YEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n---~~yEDAl~iL~~a~P-Ykv~~~l~re   50 (199)
                      |||++.+.|++||+|++  |...+   +.++|+..+|+.+.+ =.|.+.+.|.
T Consensus        54 spA~~aG~L~~GD~Il~--vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~  104 (129)
T 2kpk_A           54 GPAALDGKMETGDVIVS--VNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRG  104 (129)
T ss_dssp             SHHHHHSSCCTTCEEEE--ETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEEC
T ss_pred             ChHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence            78999999999999999  55444   457899999988763 3588888875

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=95.68  E-value=0.0098  Score=42.27  Aligned_cols=48  Identities=21%  Similarity=0.274  Sum_probs=37.0

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ...+++..++++.++..+ .-.|.+.+.|.
T Consensus        53 spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~  101 (108)
T 1q7x_A           53 GAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT-GQVVHLLLEKG  101 (108)
T ss_dssp             STHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHHT-TSEEEEEEECC
T ss_pred             ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeC
Confidence            7899999999999999942 334455688888888765 56788888764

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=95.65  E-value=0.0098  Score=41.05  Aligned_cols=45  Identities=13%  Similarity=0.113  Sum_probs=34.8

Q ss_pred             CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|++  |....+   .++|+..+|+.+ .=.|.+.+.|.
T Consensus        38 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~   85 (91)
T 2vsp_A           38 GPADLAG-LEDEDVIIE--VNGVNVLDEPYEKVVDRIQSS-GKNVTLLVCGK   85 (91)
T ss_dssp             SHHHHTT-CCTTCEEEE--ETTEECTTSCHHHHHHHHTTS-CSEEEEEEEC-
T ss_pred             ChHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeC
Confidence            7888888 999999999  655544   688999988876 55677777653

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=95.62  E-value=0.011  Score=43.48  Aligned_cols=47  Identities=15%  Similarity=0.158  Sum_probs=37.1

Q ss_pred             CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccc-cceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYAS-PYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~-PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|++  |....+   ..+|++.+|+.+. --.|.+.+.|.
T Consensus        55 spA~~aG~L~~GD~Il~--Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~  105 (123)
T 1ueq_A           55 GPAAQDGKMETGDVIVY--INEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRG  105 (123)
T ss_dssp             SHHHHTSCCCTTCEEEE--ETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEES
T ss_pred             CHHHHCCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence            78899999999999999  555444   5889999998765 34688888765

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=95.59  E-value=0.0097  Score=43.22  Aligned_cols=45  Identities=11%  Similarity=0.090  Sum_probs=36.2

Q ss_pred             CccccccccCCCCeeeEEEEeecccc---hhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHMV---YEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~~---yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+.|++||+|++  |....+.   .+|+..+|+.+ +=.|.+.+.+
T Consensus        47 spA~~aG~L~~GD~Il~--ING~~v~~~~~~~~~~~l~~~-~~~v~L~V~~   94 (97)
T 2ejy_A           47 GMIHRQGSLHVGDEILE--INGTNVTNHSVDQLQKAMKET-KGMISLKVIP   94 (97)
T ss_dssp             SHHHHHTCCCTTCEEEE--ETTBCCCSSCSHHHHHHHHHC-CEEEEEEEEC
T ss_pred             CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHcC-CCeEEEEEEE
Confidence            78999999999999999  7777666   79999999865 3467776654

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=95.59  E-value=0.01  Score=43.57  Aligned_cols=50  Identities=26%  Similarity=0.361  Sum_probs=37.8

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhcccc-ceEEEEEeeeh
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASP-YEVQIETEKEI   51 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~P-Ykv~~~l~reI   51 (199)
                      |||++.+.|++||+|+++- ..++++.++|+.++|+.+.| -.|.+.+.|.-
T Consensus        56 spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~  107 (122)
T 1v5q_A           56 SPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDV  107 (122)
T ss_dssp             SHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred             ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEECC
Confidence            7888888899999999932 23344557999999988763 46888887753

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=95.59  E-value=0.0073  Score=42.22  Aligned_cols=48  Identities=17%  Similarity=0.253  Sum_probs=34.5

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ...+++..++++.+++ ...-.|.+.+.|.
T Consensus        47 spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~   95 (103)
T 1wfv_A           47 GPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIK-SGGRRVRLLLKRG   95 (103)
T ss_dssp             SHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHH-HHCSEECEEEECT
T ss_pred             ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEEC
Confidence            7888888899999999942 2334455688888887 3345677777653

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=95.57  E-value=0.013  Score=40.56  Aligned_cols=46  Identities=20%  Similarity=0.145  Sum_probs=34.7

Q ss_pred             CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|++  |...   ++..++++.+++.+ .-.|.+.+.|.
T Consensus        40 spA~~aG~L~~GD~I~~--vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~   88 (95)
T 2vwr_A           40 GLAAQDGRLSSNDRVLA--INGHDLKYGTPELAAQIIQAS-GERVNLTIARP   88 (95)
T ss_dssp             SHHHHHCCCCTTCEEEE--ETTEECTTCCHHHHHHHHHHC-CSEEEEEEEEE
T ss_pred             ChHHHCCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHcC-CCEEEEEEEcC
Confidence            78999999999999999  5444   44567787777644 46778887764

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=95.56  E-value=0.01  Score=42.28  Aligned_cols=49  Identities=27%  Similarity=0.320  Sum_probs=37.1

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeeeh
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKEI   51 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~reI   51 (199)
                      |||++..-|++||+|+++. ...+++.+++++.+|+.+.. .|.+++.+.-
T Consensus        46 s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~~~~   95 (103)
T 2dc2_A           46 QPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRG-EIEFEVVYVA   95 (103)
T ss_dssp             SHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCCS-EEEEEEEECC
T ss_pred             CHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC-cEEEEEEecC
Confidence            6777777899999999942 24455678999999987654 8888887643

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=95.56  E-value=0.01  Score=43.75  Aligned_cols=48  Identities=25%  Similarity=0.315  Sum_probs=36.2

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ....++..++++.+|+.+.. .|.+.+.|.
T Consensus        64 spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~-~v~l~v~R~  112 (117)
T 2fne_A           64 GAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKG-TVTLMVLSS  112 (117)
T ss_dssp             SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS-SEEEEEEEC
T ss_pred             ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-eEEEEEEeC
Confidence            7899999999999999932 23344468899998876543 588888764

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=95.54  E-value=0.014  Score=39.81  Aligned_cols=47  Identities=17%  Similarity=0.204  Sum_probs=33.9

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|+++ -..++++..+|++.+++.+ .-.|.+.+.|.
T Consensus        38 spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~   85 (88)
T 2uzc_A           38 GKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIKGC-TGSLNMTLQRE   85 (88)
T ss_dssp             SHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEECC
T ss_pred             ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEeC
Confidence            7888888 9999999993 1234455567888888765 45677777663

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=95.53  E-value=0.013  Score=41.66  Aligned_cols=46  Identities=22%  Similarity=0.240  Sum_probs=36.5

Q ss_pred             CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|++  |...++   ..++++.++..+ .-.|.+.+.|.
T Consensus        47 spA~~aG~L~~GD~I~~--vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~   95 (110)
T 1um1_A           47 SPAAADGRLSLGDRILE--VNGSSLLGLGYLRAVDLIRHG-GKKMRFLVAKS   95 (110)
T ss_dssp             SHHHHHSCCCTTCEEEE--ESSCBCSSCCHHHHHHHHHTC-CSEEEEEEECC
T ss_pred             ChHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeC
Confidence            78999999999999999  655544   578888888765 56788888875

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=95.53  E-value=0.012  Score=43.01  Aligned_cols=48  Identities=23%  Similarity=0.197  Sum_probs=37.4

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ....++..+++..+|+.+ +=.|.+.++|.
T Consensus        56 spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~  104 (125)
T 3hpk_A           56 TPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV-KGEVTIHYNKL  104 (125)
T ss_dssp             SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHS-CSEEEEEEEEE
T ss_pred             CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence            7899999999999999942 334555689999998874 34688888873

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=95.51  E-value=0.012  Score=40.18  Aligned_cols=47  Identities=15%  Similarity=0.221  Sum_probs=34.4

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|+++ -...+++.++|+..+|+.+. -.|.+.+.|.
T Consensus        37 spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~   84 (87)
T 2pa1_A           37 GKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SPLRLQLDRI   84 (87)
T ss_dssp             SHHHHTT-CCTTCEEEEETTEESTTCCHHHHHHHHHTCC-SSEEEEEEEC
T ss_pred             ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEec
Confidence            6777765 9999999993 12344455689999998775 6788887764

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=95.47  E-value=0.01  Score=42.54  Aligned_cols=45  Identities=22%  Similarity=0.115  Sum_probs=36.5

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEe
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETE   48 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~   48 (199)
                      |||++.+ |++||+|+++- ++..++..+++..+|+ .+.=.|.+.+.
T Consensus        34 spA~~aG-l~~GD~Il~VNG~~v~~~~~~evv~llr-~~g~~V~L~v~   79 (82)
T 1r6j_A           34 SSAARNG-LLTEHNICEINGQNVIGLKDSQIADILS-TSGTVVTITIM   79 (82)
T ss_dssp             SHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEE
T ss_pred             CHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHh-cCCCEEEEEEE
Confidence            7899998 88999999942 4566778899999999 66667887764

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=95.45  E-value=0.013  Score=40.77  Aligned_cols=48  Identities=19%  Similarity=0.288  Sum_probs=35.2

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ....++.++|+..+|+. ..-.|.+.+.|.
T Consensus        48 spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~   96 (98)
T 1ihj_A           48 SPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE-ADFKIELEIQTF   96 (98)
T ss_dssp             SHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH-SCSEEEEEEEEC
T ss_pred             CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEEeC
Confidence            7888888899999999932 23344445888888876 456788888764

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=95.45  E-value=0.014  Score=41.67  Aligned_cols=46  Identities=17%  Similarity=0.226  Sum_probs=36.0

Q ss_pred             CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|++  |....+   ..+|++.+|+.+ .-.|.+.+.|.
T Consensus        49 spA~~aG~l~~GD~I~~--vng~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~   97 (111)
T 2dlu_A           49 GLADRDGRLQTGDHILK--IGGTNVQGMTSEQVAQVLRNC-GNSVRMLVARD   97 (111)
T ss_dssp             SSHHHHTCCCSSCEEEE--ESSCCCTTSCHHHHHHHHHHH-CSEEEEEEEES
T ss_pred             CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHhC-CCeEEEEEEeC
Confidence            78888888999999999  665554   468888888764 45688888764

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=95.41  E-value=0.0091  Score=43.26  Aligned_cols=49  Identities=18%  Similarity=0.270  Sum_probs=36.1

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ...+++.+++++.+|+.+..-.+.+.+.|.
T Consensus        53 spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~  102 (119)
T 1x6d_A           53 GLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRK  102 (119)
T ss_dssp             SHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEEC
T ss_pred             ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcC
Confidence            7899999999999999932 233445689999999776555555666653

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=95.39  E-value=0.0048  Score=44.22  Aligned_cols=46  Identities=11%  Similarity=0.110  Sum_probs=35.6

Q ss_pred             CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|++  |...++   .+++++.+|+. ..-.|.+.+.|.
T Consensus        55 spA~~aG~L~~GD~Il~--vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~  103 (111)
T 1uju_A           55 GAAGRDGRLRVGLRLLE--VNQQSLLGLTHGEAVQLLRS-VGDTLTVLVCDG  103 (111)
T ss_dssp             SHHHHHSSCCTTCBCCB--BSSCBCTTSCHHHHHHHHSS-CSSEEEECCCCC
T ss_pred             CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence            78899999999999999  655544   58999998876 345677776654

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=95.36  E-value=0.0098  Score=42.15  Aligned_cols=48  Identities=19%  Similarity=0.236  Sum_probs=34.9

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ..++++..+|++.+|.. ..-.|.+.+.|.
T Consensus        55 spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~  103 (108)
T 2jre_A           55 SAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRN-AGNPVRLLLIRR  103 (108)
T ss_dssp             SHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHH-HCSEEEEEEEEC
T ss_pred             CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence            7888999999999999931 22334446888888876 345677777664

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=95.34  E-value=0.015  Score=42.99  Aligned_cols=48  Identities=25%  Similarity=0.302  Sum_probs=36.8

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++..-|++||+|+++- ..++++..++++.+|+.+ +-.|.+.+.|.
T Consensus        64 spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~  112 (120)
T 2iwo_A           64 GVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNA-SGSIEMQVVAG  112 (120)
T ss_dssp             SHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHC-CSEEEEEEECC
T ss_pred             CHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence            6888888999999999942 344556679999988876 34588888764

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.30  E-value=0.013  Score=40.16  Aligned_cols=46  Identities=20%  Similarity=0.174  Sum_probs=34.4

Q ss_pred             CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|++  |...   ++..++++.+|+.+. -.|.+.+.|.
T Consensus        41 spA~~aGgl~~GD~I~~--vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~r~   89 (93)
T 2dkr_A           41 GVADRHGGLKRGDQLLS--VNGVSVEGEQHEKAVELLKAAQ-GSVKLVVRSG   89 (93)
T ss_dssp             SHHHHHCCCCTTCBEEE--ETTEECTTSCHHHHHHHHHHCC-SEEEEEECCC
T ss_pred             CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHhCC-CcEEEEEEeC
Confidence            67888878999999999  5444   445788888887654 3688887763

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=95.25  E-value=0.014  Score=42.66  Aligned_cols=46  Identities=28%  Similarity=0.249  Sum_probs=36.8

Q ss_pred             CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|++  |...   ++..+|++.+|+. ..=.|.+.+.|.
T Consensus        53 spA~~aG~l~~GD~Il~--Ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~  101 (117)
T 1v62_A           53 SVVDRSGALHPGDHILS--IDGTSMEHCSLLEATKLLAS-ISEKVRLEILPV  101 (117)
T ss_dssp             SHHHHHTCCCTTCBEEE--ETTEETTSCCHHHHHHHHHS-CSSEEEEEECCB
T ss_pred             CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHh-CCCeEEEEEEEC
Confidence            78899999999999999  5444   4568999999984 456788888764

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=95.25  E-value=0.017  Score=39.30  Aligned_cols=46  Identities=28%  Similarity=0.359  Sum_probs=33.9

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEe
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETE   48 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~   48 (199)
                      |||+++.-|++||+|+++- ...+++..++++.+|+.+. =.|.+.++
T Consensus        39 spA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~   85 (87)
T 4e34_A           39 QPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR-GEIEFEVV   85 (87)
T ss_dssp             SHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHCC-SEEEEEEE
T ss_pred             CHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEE
Confidence            6888878999999999941 3445567889988887543 35777665

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=95.25  E-value=0.016  Score=40.65  Aligned_cols=46  Identities=17%  Similarity=0.196  Sum_probs=34.8

Q ss_pred             CccccccccCCCCeeeEEEEeecc---cchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRH---MVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n---~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|++  |....   +..+++..++..+.- .|.+.+.|.
T Consensus        42 spA~~aG~L~~GD~I~~--Ing~~v~~~~~~~~~~~~~~~~~-~v~l~v~R~   90 (96)
T 2qkv_A           42 QYPEIDSKLQRGDIITK--FNGDALEGLPFQVSYALFKGANG-KVSMEVTRP   90 (96)
T ss_dssp             SCHHHHHHCCTTCEEEE--ETTEECTTCCHHHHHHHHHTCSS-EEEEEEECC
T ss_pred             ChHHhcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHhcCCC-cEEEEEEeC
Confidence            78999999999999999  55444   456777777776543 588888764

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=95.24  E-value=0.019  Score=39.28  Aligned_cols=45  Identities=13%  Similarity=0.129  Sum_probs=33.1

Q ss_pred             CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|++  |...   ++.+++++.+++.+ .-.|.+.+.|.
T Consensus        38 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~   85 (89)
T 2q3g_A           38 GKAAQAG-VAVGDWVLS--IDGENAGSLTHIEAQNKIRAC-GERLSLGLSRA   85 (89)
T ss_dssp             SHHHHTT-CCTTCEEEE--ETTEEGGGCCHHHHHHHHHTC-TTEEEEEEEEE
T ss_pred             CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHhC-CCEEEEEEEeC
Confidence            6888887 999999999  5443   44567888877655 44678887764

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=95.17  E-value=0.02  Score=40.68  Aligned_cols=48  Identities=17%  Similarity=0.189  Sum_probs=35.9

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+-|++||+|+++- ...+++.+++++.+|+.+ .-.|.+.+.|.
T Consensus        52 spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~  100 (107)
T 1uhp_A           52 GPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTA-KEPIVVQVLRR  100 (107)
T ss_dssp             SHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHC-CSSEEEEEEEC
T ss_pred             ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEEeC
Confidence            6788887899999999953 445566788998888764 34677777654

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=95.16  E-value=0.013  Score=41.96  Aligned_cols=46  Identities=11%  Similarity=0.061  Sum_probs=35.7

Q ss_pred             CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|++  |...   ++..++++.++..+ .-.|.+.+.|.
T Consensus        46 s~A~~aG~l~~GD~I~~--vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~   94 (113)
T 2g5m_B           46 GAAHRDGRIQVNDLLVE--VDGTSLVGVTQSFAASVLRNT-KGRVRFMIGRE   94 (113)
T ss_dssp             SHHHHHTCSCTTCBEEE--ETTEECSSCCHHHHHHHHHHS-CSSCEEEEEEC
T ss_pred             CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHhcC-CCeEEEEEEeC
Confidence            78999999999999999  5544   44578888888765 45678887764

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=95.15  E-value=0.022  Score=38.46  Aligned_cols=47  Identities=21%  Similarity=0.261  Sum_probs=33.8

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|+++- ...+++..+|++.+|+.+. -.|.+.+.|.
T Consensus        34 spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~   81 (83)
T 2kv8_A           34 SPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCS-GVLHMVIAEG   81 (83)
T ss_dssp             STTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCS-SCEEEEEECC
T ss_pred             ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEcC
Confidence            7888888 99999999931 2334455588888886553 3488888775

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=95.14  E-value=0.021  Score=40.56  Aligned_cols=47  Identities=15%  Similarity=0.181  Sum_probs=34.9

Q ss_pred             CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccc-cceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYAS-PYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~-PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|++  |...   ++..+|++.+|+.+. --.|.+.+.|.
T Consensus        50 spA~~aG~l~~GD~I~~--ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~  100 (111)
T 2koj_A           50 GAAIQDGRLKAGDRLIE--VNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQ  100 (111)
T ss_dssp             SHHHHHCSSCTTCEEEE--ETTEECTTSCHHHHHHHHHHCCCSSEEEEEEEEC
T ss_pred             ChHHHCCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence            78888888999999999  5444   344689999998753 23577777654

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=95.14  E-value=0.017  Score=40.30  Aligned_cols=44  Identities=20%  Similarity=0.172  Sum_probs=33.7

Q ss_pred             CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+ |++||+|++  |...   ++.++|+..+|+.+ +=.|.+.+.+
T Consensus        48 spA~~aG-L~~GD~I~~--ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~~   94 (96)
T 2ego_A           48 SPAQLAG-LTPGDTIAS--VNGLNVEGIRHREIVDIIKAS-GNVLRLETLY   94 (96)
T ss_dssp             CHHHHTT-CCTTCEEEE--ETTEECTTCCHHHHHHHHHHT-TTEEEEEEEC
T ss_pred             ChHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHhC-CCeEEEEEEE
Confidence            7888888 999999999  5544   44458999988876 4478777754

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=95.09  E-value=0.028  Score=42.88  Aligned_cols=47  Identities=19%  Similarity=0.252  Sum_probs=39.9

Q ss_pred             CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhcccc-ceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASP-YEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~P-Ykv~~~l~re   50 (199)
                      |||++.+.|++||+|++  |....+   .++|+..+|+...| =.|.+.+.|.
T Consensus        60 spA~~aG~L~~GD~Il~--VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~V~R~  110 (126)
T 1wif_A           60 GAAASDGILQPGDVLIS--VGHANVLGYTLREFLKLLQNITIGTVLQIKAYRG  110 (126)
T ss_dssp             SSGGGCSSSCTTCBEEE--ESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESS
T ss_pred             CHHHHcCCCCCCCEEEE--ECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEEC
Confidence            78999999999999999  788877   58999999987554 4688888886

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=95.07  E-value=0.024  Score=41.12  Aligned_cols=46  Identities=17%  Similarity=0.174  Sum_probs=35.0

Q ss_pred             CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|++  |....+   ..+++..++..+. =.|.+.+.|.
T Consensus        36 spA~~aG~L~~GD~Il~--Ing~~v~~~~~~~~~~~~~~~~-~~v~l~v~R~   84 (106)
T 2la8_A           36 QYPEIDSKLQRGDIITK--FNGDALEGLPFQVCYALFKGAN-GKVSMEVTRP   84 (106)
T ss_dssp             SCHHHHTTCCTTCEEEE--ESSCBCSSSCHHHHHHHHHSCB-SCEEEEEEEC
T ss_pred             CHHHHCCCCCCCCEEEE--ECCEECCCCCHHHHHHHHhCCC-CeEEEEEEeC
Confidence            78999999999999999  665554   5677777776654 3588888763

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=95.06  E-value=0.02  Score=41.90  Aligned_cols=46  Identities=17%  Similarity=0.175  Sum_probs=35.9

Q ss_pred             CccccccccCCCCeeeEEEEeecc---cchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRH---MVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n---~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|++  |....   +..++++.+|+.+. -.|.+.+.|.
T Consensus        62 spA~~aG~L~~GD~Il~--Ing~~v~~~~~~~~~~~~~~~~-~~v~l~v~R~  110 (124)
T 2daz_A           62 GPAAADGRMRIGDELLE--INNQILYGRSHQNASAIIKTAP-SKVKLVFIRN  110 (124)
T ss_dssp             SHHHHHTCCCTTCEECE--ESSCBCTTSCHHHHHHHHHHSC-SEEEEEEEEC
T ss_pred             CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHcCC-CeEEEEEEeC
Confidence            78899999999999999  66544   44678888887653 4889988775

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=95.04  E-value=0.022  Score=39.03  Aligned_cols=47  Identities=28%  Similarity=0.234  Sum_probs=34.0

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++..-|++||+|+++- ..++++..++++.++..+ +=.|.+.++|
T Consensus        41 spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-~~~v~l~v~r   88 (90)
T 1qav_A           41 LAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT-GKEVVLEVKY   88 (90)
T ss_dssp             SHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEE
T ss_pred             CHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEE
Confidence            6788887899999999932 234445678888888765 3457777765

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=95.04  E-value=0.021  Score=39.44  Aligned_cols=46  Identities=11%  Similarity=0.101  Sum_probs=34.2

Q ss_pred             CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEeeeh
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEKEI   51 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~reI   51 (199)
                      |||++.+ |++||+|++  |....+   .++|++.+|+.+ +-.|.+.+.|..
T Consensus        35 spA~~aG-l~~GD~I~~--vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~   83 (91)
T 2f5y_A           35 GPAERAG-LQQLDTVLQ--LNERPVEHWKCVELAHEIRSC-PSEIILLVWRMV   83 (91)
T ss_dssp             SHHHHHT-CCTTCEEEE--ETTEECTTCCHHHHHHHHHTC-SSEEEEEEEECC
T ss_pred             CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCC
Confidence            7888888 999999999  555444   467888888763 336888887753

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=95.01  E-value=0.018  Score=39.99  Aligned_cols=45  Identities=11%  Similarity=0.132  Sum_probs=34.5

Q ss_pred             CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|++  |...   ++..+|+..+|+.+ .-.|.+.+.|.
T Consensus        41 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~   88 (96)
T 2v90_A           41 LPAKKAG-MQAGDRLVA--VAGESVEGLGHEETVSRIQGQ-GSCVSLTVVDP   88 (96)
T ss_dssp             SHHHHTT-CCTTEEEEE--ETTEECTTCCHHHHHHHHHTT-TTEEEEEEECC
T ss_pred             ChHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHcC-CCEEEEEEECC
Confidence            7888888 999999999  5544   44468888888875 56777877764

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=94.99  E-value=0.02  Score=39.27  Aligned_cols=47  Identities=15%  Similarity=0.128  Sum_probs=34.6

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|+++ -....++..+|+..+|+.+ .-.|.+.+.|.
T Consensus        39 spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~   86 (90)
T 2he4_A           39 SPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKAR-EDEARLLVVGP   86 (90)
T ss_dssp             SHHHHHT-CCTTCEEEEETTEECTTSCHHHHHHHHTTS-SSEEEEEEECC
T ss_pred             ChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEEcc
Confidence            6888888 9999999993 1234445558889988876 56777777764

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=94.96  E-value=0.019  Score=43.64  Aligned_cols=46  Identities=20%  Similarity=0.172  Sum_probs=35.6

Q ss_pred             CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|++  |....+   ..+|+..+|+...--.|.+.+.|.
T Consensus        75 spA~~aG-L~~GD~I~~--vng~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~  123 (139)
T 2vz5_A           75 GPAEIAG-LQIGDKIMQ--VNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ  123 (139)
T ss_dssp             SHHHHHT-CCTTCEEEE--ETTEECTTCCHHHHHHHHCCTTCSEEEEEEEEC
T ss_pred             CHHHHCC-CCCCCEEEE--ECCEEcCCCCHHHHHHHHHhCCCCEEEEEEEEC
Confidence            7888888 999999999  655444   478999999873336688888764

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=94.95  E-value=0.021  Score=41.99  Aligned_cols=49  Identities=16%  Similarity=0.245  Sum_probs=35.4

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccc-cceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYAS-PYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~-PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ...+++..+|++.+|+.+. --.|.+.+.|.
T Consensus        69 spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~  119 (121)
T 2kom_A           69 GAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ  119 (121)
T ss_dssp             SHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEEEEEC
T ss_pred             ChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEeC
Confidence            7888888899999999932 2334444689999998753 24677777663

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=94.93  E-value=0.024  Score=40.33  Aligned_cols=49  Identities=16%  Similarity=0.215  Sum_probs=36.3

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ...+++.++|+..+|+...--.|.+.+.|.
T Consensus        37 spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~   86 (112)
T 1qau_A           37 GAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRG   86 (112)
T ss_dssp             SHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEEC
T ss_pred             ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEEEEeC
Confidence            7888888889999999932 234455578999999875335777887764

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=94.87  E-value=0.038  Score=38.21  Aligned_cols=46  Identities=22%  Similarity=0.318  Sum_probs=33.4

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++  -|++||+|+++- ..++++..++++.++.. ..-.|.+.+.|.
T Consensus        46 spA~~--gL~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~   92 (95)
T 1mfg_A           46 GPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKT-FQNTVELIIVRE   92 (95)
T ss_dssp             STTTT--TCCTTCEEEEETTEECTTCBHHHHHHHHHH-CCSEEEEEEEEE
T ss_pred             Cchhh--CCCCCCEEEEECCEEcCCCCHHHHHHHhhc-CCCeEEEEEEeC
Confidence            67887  899999999943 34445557788888774 345688888775

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=94.73  E-value=0.023  Score=39.61  Aligned_cols=44  Identities=30%  Similarity=0.315  Sum_probs=33.9

Q ss_pred             CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+ |++||+|++  |...   ++.++|+..+|. ...-.|.+.+.|
T Consensus        45 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r   91 (99)
T 3khf_A           45 SPAQEAG-LRAGDLITH--INGESVLGLVHMDVVELLL-KSGNKISLRTTA   91 (99)
T ss_dssp             SHHHHHT-CCTTCEEEE--ETTEECTTCCHHHHHHHHH-HSCSEEEEEEEC
T ss_pred             CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHh-cCCCEEEEEEEE
Confidence            7888888 999999999  5544   445888888888 344678888776

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=94.71  E-value=0.037  Score=37.96  Aligned_cols=47  Identities=19%  Similarity=0.155  Sum_probs=33.7

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|+++- ...+++..+|+..+|+. ..-.|.+.+.|.
T Consensus        38 spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~   85 (91)
T 2pkt_A           38 SKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKG-CTDNLTLTVARS   85 (91)
T ss_dssp             SHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEEE
T ss_pred             CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence            6888877 99999999932 23344555678888877 556778888764

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=94.66  E-value=0.029  Score=40.52  Aligned_cols=48  Identities=13%  Similarity=0.203  Sum_probs=34.3

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ...+++..++++.+++.+ .-.|.+.+.|.
T Consensus        60 spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~  108 (112)
T 2r4h_A           60 GPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNG-GRRVRLFLKRG  108 (112)
T ss_dssp             SHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEEECC
T ss_pred             ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeC
Confidence            7888888899999999931 233344567888888753 44678887663

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=94.62  E-value=0.026  Score=40.79  Aligned_cols=46  Identities=13%  Similarity=0.084  Sum_probs=34.7

Q ss_pred             CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|++  |...   ++..+|++.+|.... =.|.+.+.|.
T Consensus        59 spA~~aGll~~GD~I~~--vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~  107 (113)
T 1va8_A           59 GAAEKSGLLHEGDEVLE--INGIEIRGKDVNEVFDLLSDMH-GTLTFVLIPS  107 (113)
T ss_dssp             SHHHHHTCCCTTCEEEE--ETTEECTTCCHHHHHHHHHHCC-EEEEEEEECC
T ss_pred             CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHcCC-CeEEEEEEEC
Confidence            78888888899999999  5544   445889999987544 3677777653

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=94.61  E-value=0.039  Score=39.67  Aligned_cols=46  Identities=17%  Similarity=0.262  Sum_probs=35.1

Q ss_pred             CccccccccCCCCeeeEEEEeecccc---hhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHMV---YEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~~---yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||+++.-|++||+|++  |....+.   ++|+..+|+. ..-.|.+.+.|.
T Consensus        54 spA~~~agL~~GD~I~~--ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~  102 (114)
T 1uew_A           54 SPADRCAKLKVGDRILA--VNGQSIINMPHADIVKLIKD-AGLSVTLRIIPQ  102 (114)
T ss_dssp             CTTGGGSSCCTTCBEEE--ETTBCTTTSCHHHHHHHHHH-TTTEEEEEECCC
T ss_pred             ChHHHhCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence            67877678999999999  6655444   4899999986 556778877753

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=94.55  E-value=0.033  Score=38.86  Aligned_cols=48  Identities=27%  Similarity=0.282  Sum_probs=34.8

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ....++..++++.++..+ .=.|.+.+.|.
T Consensus        46 spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r~   94 (104)
T 3i4w_A           46 GPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA-GQTVTIIAQYK   94 (104)
T ss_dssp             SHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTS-CSEEEEEEEEC
T ss_pred             ChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence            7899999999999999942 234445667777777653 34678887764

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=94.46  E-value=0.032  Score=43.07  Aligned_cols=48  Identities=17%  Similarity=0.176  Sum_probs=36.0

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ...+++..+++..+|+.+ +=.|.+.+.|.
T Consensus       147 s~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~-~~~v~L~V~R~  195 (206)
T 3r0h_A          147 QYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGA-NGKVSMEVTRP  195 (206)
T ss_dssp             SCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEEE
T ss_pred             ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeC
Confidence            7888888999999999942 233444567888999765 34788888874

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=94.44  E-value=0.032  Score=39.40  Aligned_cols=45  Identities=9%  Similarity=0.028  Sum_probs=33.4

Q ss_pred             CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|++  |....+   ..+|++.+|+... =.|.+.+.|.
T Consensus        47 spA~~aG-L~~GD~I~~--vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~   94 (100)
T 1whd_A           47 GPAERAG-LQQLDTVLQ--LNERPVEHWKCVELAHEIRSCP-SEIILLVWRV   94 (100)
T ss_dssp             SHHHHHT-CCSSCEEEE--ETTEECTTCCHHHHHHHHHHCS-SEEEEEEEEC
T ss_pred             CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHcCC-CeEEEEEEEC
Confidence            6788876 999999999  554444   4688888887643 3488888775

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=94.42  E-value=0.058  Score=39.55  Aligned_cols=43  Identities=19%  Similarity=0.332  Sum_probs=31.6

Q ss_pred             CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+ |++||+|++  |....+   ..++++.+++-..  .|.+.+.|
T Consensus        57 spA~~aG-L~~GD~I~~--vng~~v~~~~~~~~~~~~~~~~--~v~l~v~R  102 (128)
T 1uf1_A           57 SEAEGSG-LKVGDQILE--VNGRSFLNILHDEAVRLLKSSR--HLILTVKD  102 (128)
T ss_dssp             CHHHHHT-CCTTCEEEE--ETTEECSSCCHHHHHHHHTTCS--EEEEEEEC
T ss_pred             CHHHHCC-CCCCCEEEE--ECCEECCCCCHHHHHHHHhcCC--eEEEEEEE
Confidence            6788777 999999999  554443   3477888887765  56677765

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=94.41  E-value=0.021  Score=39.75  Aligned_cols=46  Identities=15%  Similarity=0.125  Sum_probs=33.9

Q ss_pred             CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|++  |...   ++..+|+..+|+.+.--.+.+.+.|.
T Consensus        44 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~   92 (98)
T 2jxo_A           44 SPAEASG-LRAQDRIVE--VNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRE   92 (98)
T ss_dssp             SHHHHHT-CCTTCEEEE--ETTEECTTCCHHHHHHHHHTTTTEEEEEECCHH
T ss_pred             CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHhCCCcEEEEEEECC
Confidence            7888888 999999999  5544   34468899999887444555776653

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=94.39  E-value=0.053  Score=38.98  Aligned_cols=46  Identities=15%  Similarity=0.104  Sum_probs=34.8

Q ss_pred             CccccccccCCCCeeeEEEEeecccc---hhhHHhhhhccccceEEEEEeeeh
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHMV---YEDALTILSYASPYEVQIETEKEI   51 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~~---yEDAl~iL~~a~PYkv~~~l~reI   51 (199)
                      |||++.+ |++||+|++  |....+.   .+|++.+|+.. .-.|.+.+.|.-
T Consensus        49 spA~~aG-L~~GD~I~~--ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~~   97 (114)
T 2edz_A           49 SPAEKAG-LLDGDRVLR--INGVFVDKEEHAQVVELVRKS-GNSVTLLVLDGD   97 (114)
T ss_dssp             CTTGGGT-CCTTCEEEE--ESSSBCSSSCHHHHHHHHHHT-CSEEEEEEECHH
T ss_pred             ChHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHcC-CCEEEEEEEECC
Confidence            7888888 999999999  6655443   47888888754 567888887753

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=94.37  E-value=0.043  Score=37.52  Aligned_cols=47  Identities=15%  Similarity=0.111  Sum_probs=32.2

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+ |++||+|+++ -..++++..++++.+|+.+.--.+.+.++|
T Consensus        38 spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~~r   85 (91)
T 1g9o_A           38 SPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP   85 (91)
T ss_dssp             SHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECC
T ss_pred             CHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEcC
Confidence            7888888 9999999993 123455557888888887643333444443

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.36  E-value=0.026  Score=39.47  Aligned_cols=46  Identities=17%  Similarity=0.088  Sum_probs=35.5

Q ss_pred             CccccccccCCCCeeeEEEEeeccc--chhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM--VYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~--~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++...|++||+|++  |....+  ..+|+..+|+.+ .=.|.+.+.|.
T Consensus        40 spA~~ag~L~~GD~I~~--ing~~v~~~~~~~~~~l~~~-~~~v~l~v~~~   87 (91)
T 2e7k_A           40 GMVAQQGLLHVGDIIKE--VNGQPVGSDPRALQELLRNA-SGSVILKILSG   87 (91)
T ss_dssp             SHHHHHCCCCTTCEEEE--ETTEECTTCHHHHHHHHHTC-CSSBCEEEECC
T ss_pred             CHHHHcCCCCCCCEEEE--ECCEECCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence            78888889999999999  655554  778899999764 33677777654

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=94.33  E-value=0.037  Score=41.16  Aligned_cols=48  Identities=31%  Similarity=0.427  Sum_probs=34.1

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhcccc-ceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASP-YEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~P-Ykv~~~l~re   50 (199)
                      |||++.+ |++||+|+++ -....++..+|++.+|....| =.|.+.+.|.
T Consensus        62 spA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~  111 (124)
T 3tsv_A           62 SPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKK  111 (124)
T ss_dssp             CHHHHTT-CCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred             CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence            7888888 9999999994 233444555888887775444 3577777664

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=94.33  E-value=0.029  Score=41.51  Aligned_cols=48  Identities=15%  Similarity=0.124  Sum_probs=36.4

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ...+++..+|++.+|+.+. =.|.+.+.|.
T Consensus        76 spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~  124 (128)
T 1nf3_C           76 GLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANS-RNLIITVRPA  124 (128)
T ss_dssp             CHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHHHHTT-TSEEEEEECC
T ss_pred             CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEEC
Confidence            7899999999999999931 2344557899999997544 3688888764

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=94.32  E-value=0.059  Score=40.43  Aligned_cols=44  Identities=7%  Similarity=0.064  Sum_probs=33.8

Q ss_pred             CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+ |++||+|++  |...   ++..++++.+|+. ..=.|.+.+.+
T Consensus        76 spA~~aG-L~~GD~Il~--Vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~~  122 (132)
T 3l4f_D           76 GVAWRAG-LRMGDFLIE--VNGQNVVKVGHRQVVNMIRQ-GGNTLMVKVVM  122 (132)
T ss_dssp             SGGGGGT-CCTTCEEEE--ESSSBCTTSCHHHHHHHHHH-TTTEEEEEEEC
T ss_pred             CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHc-CCCEEEEEEEE
Confidence            7899999 999999999  6544   4457899888876 34467777754

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=94.31  E-value=0.036  Score=38.49  Aligned_cols=45  Identities=16%  Similarity=0.271  Sum_probs=32.4

Q ss_pred             CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|++  |...   ++.++|+..+|+... =.|.+.+.|.
T Consensus        41 spA~~aG-L~~GD~I~~--ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~   88 (94)
T 1vb7_A           41 GKAEAAD-LRPGDIIVA--INGQSAENMLHAEAQSKIRQSA-SPLRLQLDRS   88 (94)
T ss_dssp             SSHHHHT-CCTTCEEEE--ETTEECTTCCHHHHHHHHHTCC-SSEEEEEECC
T ss_pred             CHHHHCC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHhCC-CcEEEEEEEC
Confidence            6777655 999999999  5444   444588888888764 5677777764

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=94.29  E-value=0.052  Score=38.14  Aligned_cols=47  Identities=21%  Similarity=0.333  Sum_probs=33.6

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeeeh
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKEI   51 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~reI   51 (199)
                      |||++  -|++||+|+++- ...+++..++++.+++. ..-.|.+.+.|..
T Consensus        54 spA~~--gL~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~  101 (103)
T 1n7t_A           54 GPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKT-FQNTVELIIVREV  101 (103)
T ss_dssp             STTSS--SCCTTCEEEEETTEECSSCCHHHHHHHHHH-CCSEEEEEEECCC
T ss_pred             CchHH--CCCCCCEEEEECCEECCCCCHHHHHHHhhc-CCCeEEEEEEecC
Confidence            67887  899999999932 23344556788888874 3567888888754

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=94.28  E-value=0.041  Score=37.82  Aligned_cols=46  Identities=13%  Similarity=0.133  Sum_probs=33.9

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+ |++||+|+++- ....++..+|+..+|+. .+-.+.+.+.|
T Consensus        40 spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~~~~~~~r   86 (95)
T 3r68_A           40 SPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRK-GGDQTTLLVLD   86 (95)
T ss_dssp             SHHHHHT-CCTTEEEEEETTEECTTCCHHHHHHHHHT-TTTEEEEEEEE
T ss_pred             CHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEC
Confidence            7888888 99999999942 23455566888888887 56666666544

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=94.25  E-value=0.028  Score=41.17  Aligned_cols=46  Identities=22%  Similarity=0.192  Sum_probs=34.8

Q ss_pred             CccccccccCCCCeeeEEEEeecc---cchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRH---MVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n---~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|++  |....   ...+|++.+|+.+. -.|.+.+++.
T Consensus        61 spA~~aG~L~~GD~I~~--Ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~~~  109 (114)
T 2gzv_A           61 TPAALDGTVAAGDEITG--VNGRSIKGKTKVEVAKMIQEVK-GEVTIHYNKL  109 (114)
T ss_dssp             SHHHHHCCCCTTCEEEE--ETTEECTTCCHHHHHHHHHHCC-SEEEEEEECC
T ss_pred             ChHHHCCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHcCC-CeEEEEEEec
Confidence            78999999999999999  55443   46788888887543 4577877643

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=94.21  E-value=0.037  Score=39.13  Aligned_cols=45  Identities=27%  Similarity=0.320  Sum_probs=33.8

Q ss_pred             CccccccccCCCCeeeEEEEee---cccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISF---RHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F---~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|++  |..   +++.++|+..+|+.+ .-.|.+.+.|.
T Consensus        40 spA~~aG-L~~GD~I~~--ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~   87 (103)
T 1v5l_A           40 SKAAAAN-LCPGDVILA--IDGFGTESMTHADAQDRIKAA-SYQLCLKIDRA   87 (103)
T ss_dssp             STTGGGT-CCTTCBEEE--ETTEECSSCCHHHHHHHHTTC-CSEEECEECCC
T ss_pred             CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHhC-CCeEEEEEEEC
Confidence            6777766 999999999  544   344468889888876 56677777764

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.07  E-value=0.044  Score=38.04  Aligned_cols=45  Identities=20%  Similarity=0.121  Sum_probs=31.2

Q ss_pred             CccccccccCCCCeeeEEEEeecc---cchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRH---MVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n---~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|++  |....   +.+++++.++.. ..-.|.+.+.|.
T Consensus        43 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~   90 (94)
T 2eeg_A           43 SKAALAA-LCPGDLIQA--INGESTELMTHLEAQNRIKG-CHDHLTLSVSSG   90 (94)
T ss_dssp             SHHHHTT-CCTTCEEEE--ETTEETTTCCHHHHHHHHHT-CCSCEEEEEECC
T ss_pred             CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence            6788877 999999999  55443   335777777765 334577777653

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=94.00  E-value=0.043  Score=38.85  Aligned_cols=45  Identities=22%  Similarity=0.380  Sum_probs=32.7

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+ |++||+|+++- ..++++.++|++.+|+..++  |.+.++|
T Consensus        52 spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~--v~l~v~r   97 (104)
T 1wi2_A           52 SDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTARE--ISMRVRF   97 (104)
T ss_dssp             SHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHHSSS--EEEEEEC
T ss_pred             ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCE--EEEEEEE
Confidence            6788877 99999999942 23455567999999987554  5555554

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=94.00  E-value=0.038  Score=38.97  Aligned_cols=45  Identities=13%  Similarity=0.142  Sum_probs=32.3

Q ss_pred             CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|++  |...   ++..++++.++..+ .-.|.+.+.|.
T Consensus        40 spA~~aG-L~~GD~I~~--ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~   87 (103)
T 1wf7_A           40 GKASQAH-VRIGDVVLS--IDGISAQGMTHLEAQNKIKAC-TGSLNMTLQRA   87 (103)
T ss_dssp             CHHHHTT-CCTTCBEEE--ETTEECSSCCHHHHHHHHHHC-SSEEEEEECCC
T ss_pred             CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeC
Confidence            6888888 999999999  5443   34457777777654 44688888763

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=93.98  E-value=0.048  Score=36.70  Aligned_cols=47  Identities=23%  Similarity=0.391  Sum_probs=31.5

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++. -|++||+|+++ -..++++.+++++.+++.+. -.|.+.+.|.
T Consensus        36 spA~~a-Gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~R~   83 (85)
T 1rgw_A           36 SKAAQS-QLSQGDLVVAIDGVNTDTMTHLEAQNKIKSAS-YNLSLTLQKS   83 (85)
T ss_dssp             SHHHHS-SCCCCSBEEEETTEECTTCCHHHHHHHHTTCS-SCEEEEEESC
T ss_pred             CHHHHc-CCCCCCEEEEECCEECCCcCHHHHHHHHHcCC-CeEEEEEEeC
Confidence            677775 49999999993 12334445578887776543 3478887763

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=93.96  E-value=0.044  Score=38.74  Aligned_cols=43  Identities=26%  Similarity=0.235  Sum_probs=33.0

Q ss_pred             CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEe
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETE   48 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~   48 (199)
                      |||++.+ |++||+|++  |....+   ..+|+..+|+.+ .-.|.+.+.
T Consensus        42 spA~~aG-L~~GD~Il~--Ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~   87 (90)
T 1y7n_A           42 GIAERGG-VRVGHRIIE--INGQSVVATPHEKIVHILSNA-VGEIHMKTM   87 (90)
T ss_dssp             SHHHHHT-CCSSCEEEE--ETTEECTTSCHHHHHHHHHHC-CEEEEEEEE
T ss_pred             CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHcC-CCeEEEEEE
Confidence            7888888 999999999  766665   578899988744 445666554

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=93.93  E-value=0.053  Score=38.17  Aligned_cols=47  Identities=15%  Similarity=0.164  Sum_probs=34.8

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|+++- ....++..+|+..+|+. ..-.|.+.+.|.
T Consensus        37 spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~   84 (106)
T 3ngh_A           37 SPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRK-SGNSVTLLVLDG   84 (106)
T ss_dssp             SHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHHH-TTTEEEEEEECH
T ss_pred             CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCEEEEEEEEC
Confidence            7888888 99999999942 23455566788888873 455788888764

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=93.93  E-value=0.052  Score=41.90  Aligned_cols=49  Identities=12%  Similarity=0.076  Sum_probs=36.6

Q ss_pred             CccccccccCCCCeeeEEE-Eeecc--cchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRH--MVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n--~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|+.||+|+++- ...++  +..++++.+|.....-.|.+.+.|.
T Consensus        56 spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~~~~v~l~v~R~  107 (206)
T 3r0h_A           56 GQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRA  107 (206)
T ss_dssp             SHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHHSCCSSEEEEEEECC
T ss_pred             ChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHHhcCCCceEEEEEec
Confidence            7899999999999999941 34455  6677888888765554488888754

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=93.89  E-value=0.06  Score=38.25  Aligned_cols=47  Identities=19%  Similarity=0.249  Sum_probs=32.0

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|+++- ...+++...+++..+.. ..-.|.+.+.|.
T Consensus        57 spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~  104 (110)
T 1x5q_A           57 GPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRG-AGTAVQMRVWRE  104 (110)
T ss_dssp             SHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEEEEC
T ss_pred             CHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHhhC-CCCeEEEEEEEC
Confidence            6888887 99999999942 33444445566655554 456788887764

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=93.87  E-value=0.036  Score=40.51  Aligned_cols=49  Identities=16%  Similarity=0.215  Sum_probs=36.0

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ....++.++|+..+|+...--.|.+.+.|.
T Consensus        44 spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~   93 (127)
T 1b8q_A           44 GAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRG   93 (127)
T ss_dssp             SSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEEEECC
T ss_pred             CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEeC
Confidence            7888888889999999931 233445569999999875435678887763

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.85  E-value=0.027  Score=41.43  Aligned_cols=44  Identities=16%  Similarity=0.302  Sum_probs=33.7

Q ss_pred             CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+ |++||+|++  |...++   ..+|+..+|+.+ .=.|.+.+.|
T Consensus        72 spA~~aG-L~~GD~I~~--ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r  118 (126)
T 2yuy_A           72 GPAFEAG-LCTGDRIIK--VNGESVIGKTYSQVIALIQNS-DTTLELSVMP  118 (126)
T ss_dssp             SHHHHHT-CCSSCCCCE--ETTEECSSCCHHHHHHHHHTC-TTEEEEECCC
T ss_pred             ChHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHcC-CCEEEEEEEE
Confidence            6888888 999999999  555444   789999999864 4566676665

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=93.75  E-value=0.07  Score=36.43  Aligned_cols=45  Identities=9%  Similarity=0.094  Sum_probs=31.2

Q ss_pred             CccccccccCCCCeeeEEEEee---cccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISF---RHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F---~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|++  |..   +++..++++.++..+ .=.|.+.+.|.
T Consensus        43 spA~~aG-l~~GD~I~~--vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~   90 (91)
T 1m5z_A           43 GPGDLGG-LKPYDRLLQ--VNHVRTRDFDCCLVVPLIAES-GNKLDLVISRN   90 (91)
T ss_dssp             SHHHHHT-CCTTCEEEE--ETTEECTTCCHHHHHHHHHTS-TTEEEEEEEEC
T ss_pred             CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeC
Confidence            6888887 999999999  444   444455666666643 34677777663

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=93.74  E-value=0.11  Score=36.77  Aligned_cols=60  Identities=20%  Similarity=0.230  Sum_probs=40.7

Q ss_pred             CccccccccCCCCeeeEEEEeecccc-hhhHHhhhhccc-cceEEEEEeeehhhhhhhhhhhcccCcccccCCCCC
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHMV-YEDALTILSYAS-PYEVQIETEKEIYFIMVCSKCEKKLGKVITPDNWKS   75 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~-PYkv~~~l~reIyf~MVC~KCEKKL~KLaTPD~wK~   75 (199)
                      |||++ + |++||+|++  |....+. .+|...+|+... --.|.+.+.|.          .+.+.--++|..+.+
T Consensus        12 spA~~-G-L~~GD~I~~--InG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~----------g~~~~~~v~~~~~~~   73 (91)
T 2kjp_A           12 MPAKG-K-IEVGDKIIS--ADGKNYQSAEKLIDYISSKKAGDKVTLKIERE----------EKEKRVTLTLKQFPD   73 (91)
T ss_dssp             SCCSS-C-CCSSCEEEE--ETTBCCSSHHHHHHHHSSCCSSCEECEEEESS----------SCEECCCEECCCCTT
T ss_pred             ChHHH-c-CCCCCEEEE--ECCEECCCHHHHHHHHHcCCCCCEEEEEEEEC----------CEEEEEEEEEeccCC
Confidence            78888 5 999999998  5555443 456677777663 34688888774          234444577776654

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=93.64  E-value=0.08  Score=37.41  Aligned_cols=46  Identities=28%  Similarity=0.253  Sum_probs=33.6

Q ss_pred             CccccccccCCCCeeeEEEEee---cccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISF---RHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F---~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|++  |..   .++..++++.++..+ .-.|.+.+.|.
T Consensus        50 s~A~~aG~L~~GD~Il~--Vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r~   98 (113)
T 1um7_A           50 GPADLSGELRRGDRILS--VNGVNLRNATHEQAAAALKRA-GQSVTIVAQYR   98 (113)
T ss_dssp             SHHHHTTCCCTTCEEEE--ESSCBCTTCCHHHHHHHHHSC-CSEEEEEEECC
T ss_pred             CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHhC-CCcEEEEEEEC
Confidence            68888888999999999  544   444457787777643 45677777653

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=93.63  E-value=0.047  Score=39.92  Aligned_cols=47  Identities=15%  Similarity=0.083  Sum_probs=35.0

Q ss_pred             CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhcccc---ceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASP---YEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~P---Ykv~~~l~re   50 (199)
                      |||++.+-|++||+|++  |...   ++..++|..+|+.+.+   =.|.+.+.|.
T Consensus        54 spA~~aggL~~GD~Il~--Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r~  106 (118)
T 1v6b_A           54 GAAERHGGVVKGDEIMA--INGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVC  106 (118)
T ss_dssp             SHHHHHCSSCTTCEEEE--ESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred             CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHHhhhcCCCeEEEEEEeC
Confidence            68888889999999999  6554   4457899999887632   3577777663

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=93.63  E-value=0.052  Score=39.20  Aligned_cols=49  Identities=14%  Similarity=0.147  Sum_probs=37.0

Q ss_pred             Cccccc-cccCCCCeeeEEEEeecc---cchhhHHhhhhcccc---ceEEEEEeeehh
Q psy11904          2 SHCAET-WALNNGDRITSVRISFRH---MVYEDALTILSYASP---YEVQIETEKEIY   52 (199)
Q Consensus         2 s~a~~~-~~l~~GD~i~s~ti~F~n---~~yEDAl~iL~~a~P---Ykv~~~l~reIy   52 (199)
                      |||++. .-|++||+|++  |...+   +.+++++.+++.+..   -.|.+.+.|.-+
T Consensus        52 spA~~a~gGL~~GD~Il~--ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~  107 (119)
T 2cs5_A           52 TPADLCVPRLNEGDQVVL--INGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAV  107 (119)
T ss_dssp             STTTSSSSCCCTTCEEEE--ETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECCCC
T ss_pred             CHHHHhhcCCCCCCEEEE--ECCEECCCCCHHHHHHHHHhccccCCCEEEEEEEcccc
Confidence            688888 59999999999  65544   456888888877642   578888887643

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=93.53  E-value=0.09  Score=36.84  Aligned_cols=44  Identities=9%  Similarity=0.122  Sum_probs=32.4

Q ss_pred             CccccccccCCCCeeeEEEEeecccc---hhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHMV---YEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~~---yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+ |++||+|++  |....+.   ++|++.+|+.+ .=.|.+.+.|
T Consensus        41 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r   87 (102)
T 2d90_A           41 SPAEAAG-LKNNDLVVA--VNGKSVEALDHDGVVEMIRKG-GDQTTLLVLD   87 (102)
T ss_dssp             STTTTTT-CCTTCEEEE--ESSCBCTTSCHHHHHHHHHHS-TTEEEEEECS
T ss_pred             CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHcC-CCEEEEEEEE
Confidence            6888887 999999999  6555444   57888888763 4467777754

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.48  E-value=0.076  Score=39.39  Aligned_cols=42  Identities=19%  Similarity=0.144  Sum_probs=31.0

Q ss_pred             CccccccccCCCCeeeEEEEeecccc---hhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHMV---YEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~~---yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+ |++||+|++  |....+.   ++|+..+|+-.   .+.+.++|
T Consensus        55 spA~~aG-L~~GD~Il~--Ing~~v~~~~~~~~~~~l~~~---~v~l~v~R   99 (114)
T 2d8i_A           55 GLASKKG-LKAGDEILE--INNRAADALNSSMLKDFLSQP---SLGLLVRT   99 (114)
T ss_dssp             SSHHHHT-CCTTCCEEE--ESSCBGGGCCHHHHHHHHTSS---EEEEEEEE
T ss_pred             CHHHHcC-CCCCCEEEE--ECCEECCCcCHHHHHHHHhCC---cEEEEEEE
Confidence            6888888 999999999  6655554   46777777643   66776665

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.45  E-value=0.054  Score=38.22  Aligned_cols=46  Identities=13%  Similarity=0.208  Sum_probs=33.6

Q ss_pred             CccccccccCCCCeeeEEEEeecccc--hhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHMV--YEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~~--yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++..-|++||+|++  |....+.  +++++.+++.+ .-.|.+.+.|.
T Consensus        46 spA~~agGL~~GD~I~~--ing~~v~~~~~~~~~~~~~~-~~~v~l~v~R~   93 (100)
T 2edp_A           46 GKAALSQKMRTGDELVN--INGTPLYGSRQEALILIKGS-FRILKLIVRRR   93 (100)
T ss_dssp             SHHHHHTSCCTTCEEEE--ETTEECCSCSHHHHHHHHTC-CSSCEEEEEEC
T ss_pred             CHHHHcCCCCCCCEEEE--ECCEEccchHHHHHHHHHhC-CCeEEEEEEeC
Confidence            67888878999999998  5543332  57788888764 45677887764

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.44  E-value=0.052  Score=38.04  Aligned_cols=45  Identities=24%  Similarity=0.372  Sum_probs=31.7

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+ |++||+|+++- ..++++.+++++.+|+-.++  |.+.+.|
T Consensus        47 spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~--v~l~v~R   92 (100)
T 2eeh_A           47 SSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLTSSSR--LHMMVRR   92 (100)
T ss_dssp             SHHHHHT-CCSSCEEEEETTEECSSCCHHHHHHHHHSCSS--EEEEEEE
T ss_pred             CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcCCCE--EEEEEEE
Confidence            6888888 99999999932 23344456889998887544  5555554

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=93.36  E-value=0.052  Score=39.82  Aligned_cols=46  Identities=17%  Similarity=0.143  Sum_probs=34.2

Q ss_pred             CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|++  |....+   .++|+..+|+.+..-.|.+.+.+.
T Consensus        47 spA~~aG-L~~GD~Il~--InG~~v~~~~~~d~~~~i~~~~~~~v~l~V~~~   95 (111)
T 1vae_A           47 CSASLAG-AKEGDYIVS--IQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSL   95 (111)
T ss_dssp             SSHHHHH-CCTTCEEEE--ETTEECSSCCHHHHHHHHHHTTTSEECEEEECE
T ss_pred             CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHhCCCceEEEEEEec
Confidence            6777765 999999999  665544   478889888876555577777654

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=93.35  E-value=0.098  Score=40.12  Aligned_cols=47  Identities=21%  Similarity=0.340  Sum_probs=35.6

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeeeh
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKEI   51 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~reI   51 (199)
                      |||++  -|++||+|+++- ...+++..++++.+|..+. ..|.+.+.|..
T Consensus        35 spA~~--gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~r~~   82 (195)
T 2qbw_A           35 GPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ-NTVELIIVREV   82 (195)
T ss_dssp             STTTT--TCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SEEEEEEEEEC
T ss_pred             ChHHh--CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEEcC
Confidence            78888  799999999941 2455566788888887664 49999998843

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=93.35  E-value=0.064  Score=42.12  Aligned_cols=45  Identities=18%  Similarity=0.279  Sum_probs=34.9

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+ |++||+|+++ -....++.+++++.+|+-  .=.|.+.+.|
T Consensus       121 spA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~l~~--~~~v~l~v~r  166 (192)
T 3k1r_A          121 GQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRT--EKTVSIKVRH  166 (192)
T ss_dssp             SHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHTS--SSEEEEEEEE
T ss_pred             ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHcC--CCeEEEEEEE
Confidence            7899998 9999999994 234455668999998877  5567777775

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=93.33  E-value=0.085  Score=37.49  Aligned_cols=46  Identities=9%  Similarity=0.065  Sum_probs=32.5

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+ |++||+|+++- ....++..+|++.+|+.+ .-.|.+.+.+
T Consensus        56 spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~~  102 (109)
T 1q3o_A           56 GVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQG-GNTLMVKVVM  102 (109)
T ss_dssp             SHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEEEEEEEE
T ss_pred             CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEE
Confidence            6788887 99999999942 234455567888888765 3357776654

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=93.28  E-value=0.09  Score=39.22  Aligned_cols=39  Identities=15%  Similarity=0.034  Sum_probs=31.4

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhcccc
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASP   40 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~P   40 (199)
                      |+|++.+.|++||+|+++- ++..+...+++.++|+....
T Consensus        39 g~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~   78 (95)
T 3gge_A           39 GVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKK   78 (95)
T ss_dssp             SHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCT
T ss_pred             ChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCC
Confidence            6899999999999999943 34555678899999987543

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=92.98  E-value=0.07  Score=36.39  Aligned_cols=46  Identities=13%  Similarity=0.083  Sum_probs=31.7

Q ss_pred             CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccc-cceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYAS-PYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~-PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|++  |....+   ..+|...+|+... -=.|.+.+.|.
T Consensus        39 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~   88 (90)
T 2eaq_A           39 SPAEFSQ-LQVDDEIIA--INNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRY   88 (90)
T ss_dssp             SHHHHTT-CCTTCEEEE--ETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             ChHHHcC-CCCCCEEEE--ECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEeC
Confidence            6787776 999999999  555444   5677777777532 23566776653

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=92.96  E-value=0.094  Score=40.72  Aligned_cols=47  Identities=28%  Similarity=0.282  Sum_probs=36.6

Q ss_pred             CccccccccCCCCeeeEEEEeecccc---hhhHHhhhhcccc-ceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHMV---YEDALTILSYASP-YEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~~---yEDAl~iL~~a~P-Ykv~~~l~re   50 (199)
                      |||++.+.|++||+|++  |....+.   ++|+..+|+.+.| -.|.+.+.|.
T Consensus        47 spA~~aG~l~~GD~I~~--vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~   97 (196)
T 1p1d_A           47 SPAERCGVLQIGDRVMA--INGIPTEDSTFEEANQLLRDSSITSKVTLEIEFD   97 (196)
T ss_dssp             SHHHHTSCCCSSCCEEE--ETTBCSTTSCHHHHHHHHHTCCSSSEEEEEEEEC
T ss_pred             CHHHHcCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEec
Confidence            78888888999999999  6665554   6888999987764 3677777653

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=92.91  E-value=0.095  Score=37.40  Aligned_cols=46  Identities=26%  Similarity=0.382  Sum_probs=32.7

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|+++- ....++.+++++.+|+...  .|.+.+.|.
T Consensus        52 s~A~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~--~v~l~v~r~   98 (114)
T 1x5n_A           52 SLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSR--SLTISIVAA   98 (114)
T ss_dssp             STTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHCS--SEEEEECSS
T ss_pred             CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCC--eEEEEEEcC
Confidence            6788877 99999999942 2345556677888887665  566777654

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=92.83  E-value=0.053  Score=37.96  Aligned_cols=45  Identities=20%  Similarity=0.223  Sum_probs=30.1

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+ |++||+|+++- ..+.++..++++..++-..  .|.+.+.|
T Consensus        46 spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~~--~v~l~v~R   91 (101)
T 1uez_A           46 SLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGSK--KLVLSVYS   91 (101)
T ss_dssp             SHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSSSS--SCCEEECC
T ss_pred             CHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHhhcCCC--eEEEEEEE
Confidence            6888887 99999999942 3344555566777766555  35555554

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=92.77  E-value=0.089  Score=38.53  Aligned_cols=47  Identities=21%  Similarity=0.261  Sum_probs=34.2

Q ss_pred             CccccccccCCCCeeeEEEEeecccc-hhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHMV-YEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|++  |....+. .+|+..+|+...--.|.+.+.|.
T Consensus        59 spA~~aG~l~~GD~I~~--ing~~v~~~~~~~~~l~~~~g~~v~l~v~R~  106 (124)
T 1wh1_A           59 SIAAKDGRIREGDRIIQ--INGIEVQNREEAVALLTSEENKNFSLLIARP  106 (124)
T ss_dssp             SHHHHTCCCCTTCEEEE--ESSCBCCSHHHHHHHHTCSSCCSCCEEEEEC
T ss_pred             CHHHHcCCCCCCCEEEE--ECCEECCCHHHHHHHHHhCCCCEEEEEEEEC
Confidence            78888888999999999  6665553 46778888764334677777654

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=92.49  E-value=0.14  Score=35.47  Aligned_cols=46  Identities=13%  Similarity=0.136  Sum_probs=30.5

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|+++- ...+++..++++..++-  -=.|.+.+.|.
T Consensus        40 spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~--g~~v~l~v~R~   86 (93)
T 2dls_A           40 GAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIKS--GAYVALTLLGS   86 (93)
T ss_dssp             STTTTTT-CCSSCEEEEETTEECSSSCHHHHHHHHTS--SSEEEEEEECC
T ss_pred             CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcC--CCEEEEEEEEC
Confidence            6888887 99999999831 22344445677777763  34566666653

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=92.49  E-value=0.29  Score=34.43  Aligned_cols=60  Identities=17%  Similarity=0.206  Sum_probs=38.8

Q ss_pred             CccccccccCCCCeeeEEEEeecccc-hhhHHhhhhcccc-ceEEEEEeeehhhhhhhhhhhcccCcccccCCCCC
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHMV-YEDALTILSYASP-YEVQIETEKEIYFIMVCSKCEKKLGKVITPDNWKS   75 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~P-Ykv~~~l~reIyf~MVC~KCEKKL~KLaTPD~wK~   75 (199)
                      |||++ + |++||+|++  |....+. .+|...+|+...| -.|.+.+.|.          .+.+.--++|..+.+
T Consensus        16 spA~~-G-L~~GD~Il~--InG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~----------g~~~~~~v~~~~~~~   77 (94)
T 2kl1_A           16 MPAAG-R-LEAGDRIAA--IDGQPINTSEQIVSYVREKQAGDRVRVTFIRD----------RKQHEAELVLKPFPH   77 (94)
T ss_dssp             STTBT-T-BCTTCEEEE--ETTBCCCCHHHHHHHHHHSCTTCCEEEEEEET----------TEEEEEEECCCBCSS
T ss_pred             ChHHh-C-CCCCCEEEE--ECCEECCCHHHHHHHHHhCCCCCEEEEEEEEC----------CEEEEEEEEEeeCCC
Confidence            68887 4 999999999  6555542 3566667766533 4678888774          233333467776654

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=92.29  E-value=0.14  Score=35.12  Aligned_cols=45  Identities=18%  Similarity=0.152  Sum_probs=29.3

Q ss_pred             CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|++  |...   ++...+++..+.. ..-.|.+.+.|.
T Consensus        45 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~   92 (97)
T 2w4f_A           45 GPAARAG-VRVGDKLLE--VNGVALQGAEHHEAVEALRG-AGTAVQMRVWRE   92 (97)
T ss_dssp             SHHHHHT-CCTTCEEEE--ETTEECTTCCHHHHHHHHHT-SCSEEEEEEECC
T ss_pred             ChHHHcC-CCCCCEEEE--ECCEECCCcCHHHHHHHHhC-CCCeEEEEEEeC
Confidence            6888877 999999999  5443   3333345444443 455677777764

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=92.22  E-value=0.13  Score=36.89  Aligned_cols=48  Identities=27%  Similarity=0.282  Sum_probs=32.2

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ..++++..++++.++..+ .-.|.+.+.|.
T Consensus        49 spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r~   97 (119)
T 1tp5_A           49 GPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA-GQTVTIIAQYK   97 (119)
T ss_dssp             SHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTS-CSEEEEEEEEC
T ss_pred             CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence            7888888899999999932 233334455666666543 34677777764

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=92.19  E-value=0.1  Score=37.92  Aligned_cols=48  Identities=17%  Similarity=0.203  Sum_probs=35.1

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|+++- ....++.++|+..+|+.+.--.+.+.+.|.
T Consensus        44 spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~   92 (128)
T 2kjd_A           44 SPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRE   92 (128)
T ss_dssp             SHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEECHH
T ss_pred             ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEeC
Confidence            6888888 99999999931 234455578899999877444566777764

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=92.16  E-value=0.068  Score=37.71  Aligned_cols=43  Identities=19%  Similarity=0.308  Sum_probs=31.1

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEE
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIE   46 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~   46 (199)
                      |||++.+ |++||+|+++- ..++++.++|+..+|+.. +-.|.+.
T Consensus        59 spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~  102 (104)
T 2z17_A           59 SPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIRSS-GNLLTIE  102 (104)
T ss_dssp             SHHHHHT-CCTTCBCCEETTEECTTCCHHHHHHHHHHT-TTEEEEE
T ss_pred             ChHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhC-CCcEEEE
Confidence            6888888 99999999932 223444688999988876 4466554

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=92.10  E-value=0.2  Score=34.07  Aligned_cols=45  Identities=18%  Similarity=0.303  Sum_probs=29.9

Q ss_pred             CccccccccCCCCeeeEEEEeecc---cchhhHHhhhhccc-cceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRH---MVYEDALTILSYAS-PYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n---~~yEDAl~iL~~a~-PYkv~~~l~re   50 (199)
                      |||+  .-|++||+|++  |....   +.++|+..+|+... --.|.+.+.|.
T Consensus        37 spA~--aGl~~GD~I~~--vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~   85 (88)
T 3bpu_A           37 SPRS--RGLKEGDLIVE--VNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQ   85 (88)
T ss_dssp             --CC--TTCCTTCEEEE--ETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEEE
T ss_pred             ChhH--hCCCCCCEEEE--ECCEEcCCCCHHHHHHHHHhCCCCCEEEEEEEeC
Confidence            5666  57999999998  54443   44588888887533 34677777663

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=92.05  E-value=0.21  Score=37.86  Aligned_cols=46  Identities=13%  Similarity=0.158  Sum_probs=36.9

Q ss_pred             ccccccCCCCeeeEE-EEeecccchhhHHhhhhcccc-ceEEEEEeee
Q psy11904          5 AETWALNNGDRITSV-RISFRHMVYEDALTILSYASP-YEVQIETEKE   50 (199)
Q Consensus         5 ~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~P-Ykv~~~l~re   50 (199)
                      ++...|++||+|+++ -...+++..+|++.+|+.+.+ =.|.+.+.|.
T Consensus        45 ~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~   92 (113)
T 3soe_A           45 QWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRG   92 (113)
T ss_dssp             GGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEEEEES
T ss_pred             HHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEEC
Confidence            566789999999996 357788889999999987543 3688888874

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=91.97  E-value=0.16  Score=38.15  Aligned_cols=48  Identities=21%  Similarity=0.178  Sum_probs=33.9

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ...+++..++++.+|..+ .-.|.+.+.|.
T Consensus        46 spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~r~   94 (196)
T 3gsl_A           46 GAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA-GSIVRLYVMRR   94 (196)
T ss_dssp             SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTS-CSEEEEEEEEE
T ss_pred             ChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCcEEEEEEec
Confidence            7899999999999999931 233444556666666554 45688888764

>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=91.95  E-value=0.02  Score=42.34  Aligned_cols=36  Identities=14%  Similarity=0.264  Sum_probs=28.5

Q ss_pred             ccchhhcccc--------cCCCcCCcccccc----cCCcccCCCCCCC
Q psy11904        110 SCKICRQKVH--------QVGSHYCQACAYK----KGEHLVLVTADPE  145 (199)
Q Consensus       110 kCkiCK~kVh--------Q~G~kYCQ~CAYk----KGiCAMCGk~~~~  145 (199)
                      +|..|++.+.        .+|..||..|-.+    +|.|+.|+++...
T Consensus        34 ~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~   81 (122)
T 1m3v_A           34 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG   81 (122)
T ss_dssp             CCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred             CcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence            7888887774        3467899999775    5699999998875

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.88  E-value=0.087  Score=37.05  Aligned_cols=45  Identities=7%  Similarity=0.003  Sum_probs=32.1

Q ss_pred             CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|++  |...   ++.+++++.+++.+ .-.+.+.+.|.
T Consensus        43 spA~~aG-l~~GD~I~~--vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r~   90 (106)
T 2eei_A           43 GVAMRAG-VLADDHLIE--VNGENVEDASHEEVVEKVKKS-GSRVMFLLVDK   90 (106)
T ss_dssp             SHHHHHT-CCSSEEEEE--ETTEECTTCCHHHHHHHHHHH-CSEEEEEECCT
T ss_pred             CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHhC-CCeEEEEEEcC
Confidence            6888888 999999999  5443   44567888777654 34677776653

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=91.43  E-value=0.09  Score=44.88  Aligned_cols=48  Identities=27%  Similarity=0.216  Sum_probs=36.7

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++..-|++||+|+++- +.++++.+++++.+|+.+ .=.|.+.++|.
T Consensus       114 spA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~-g~~V~L~V~R~  162 (263)
T 1z87_A          114 LAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT-GKEVVLEVKYM  162 (263)
T ss_dssp             SHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHC-CSCCCEEEECC
T ss_pred             CHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcC-CCeEEEEEEeC
Confidence            6777778999999999943 345556679999998876 44688888873

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=91.37  E-value=0.22  Score=38.52  Aligned_cols=48  Identities=25%  Similarity=0.337  Sum_probs=35.2

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++..-|++||+|+++- ...+++..+|++.+|..+ .-.|.+.+.|.
T Consensus        44 spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~   92 (200)
T 2qt5_A           44 GIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNV-GERVVLEVEYE   92 (200)
T ss_dssp             SHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTC-CSEEEEEEEEE
T ss_pred             ChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEecc
Confidence            6777777899999999942 334555668888777654 34788888875

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=90.89  E-value=0.27  Score=35.41  Aligned_cols=44  Identities=14%  Similarity=0.100  Sum_probs=31.7

Q ss_pred             CccccccccCCCCeeeEEEEeecc---cchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRH---MVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n---~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      ||| + ..|++||+|++  |...+   +..++++.+|..+ .=.|.+.+.|.
T Consensus        57 spA-~-~gL~~GD~I~~--Vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~  103 (117)
T 2csj_A           57 GPA-D-GLLQENDRVVM--VNGTPMEDVLHSFAVQQLRKS-GKIAAIVVKRP  103 (117)
T ss_dssp             SSH-H-HHBCTTCEEEE--ESSCBCBTCCHHHHHHHHHHS-CSEEEEEEEEE
T ss_pred             Ccc-c-ccCCCCCEEEE--ECCEECCCcCHHHHHHHHhcC-CCeEEEEEEEC
Confidence            566 3 77999999999  55444   4568888888764 34678887764

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=90.88  E-value=0.19  Score=36.99  Aligned_cols=47  Identities=15%  Similarity=0.226  Sum_probs=32.5

Q ss_pred             CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEeeeh
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEKEI   51 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~reI   51 (199)
                      |||++.+ |++||+|++  |....+   ..+|...+++.+.-=.|.+.+.|..
T Consensus        55 spA~~AG-L~~GD~Il~--VnG~~v~~~~~~dv~~~i~~~~~~~v~l~V~~~~  104 (109)
T 2vsv_A           55 CSASVAG-AREGDYIVS--IQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLL  104 (109)
T ss_dssp             SHHHHTT-CCTTCEEEE--ETTEECTTCCHHHHHHHHHTTTTSCEEEEEESCC
T ss_pred             CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHhCCCCeEEEEEEECC
Confidence            6777776 999999999  655444   3478888887543334777776543

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=90.72  E-value=0.18  Score=44.65  Aligned_cols=48  Identities=31%  Similarity=0.418  Sum_probs=36.1

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccc-eEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPY-EVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PY-kv~~~l~re   50 (199)
                      |||++.+ |++||+|+++ -+.++++..++++.+|....|= .|.+.+.|.
T Consensus        42 spA~~aG-L~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~   91 (391)
T 3tsz_A           42 SPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKK   91 (391)
T ss_dssp             CHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEEC
T ss_pred             CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeC
Confidence            7899999 9999999994 2345556689999999864443 577777664

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=90.28  E-value=0.21  Score=35.82  Aligned_cols=44  Identities=16%  Similarity=0.107  Sum_probs=28.3

Q ss_pred             CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+ |++||+|++  |...   ++...+++.++. ...-.|.+.+.|
T Consensus        53 spA~~aG-L~~GD~Il~--vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~r   99 (117)
T 1uit_A           53 SIAHQAG-LEYGDQLLE--FNGINLRSATEQQARLIIG-QQCDTITILAQY   99 (117)
T ss_dssp             SHHHHHT-CCTTCEECE--ETTEETTTCCHHHHHHHTT-SCCSEEEEEECC
T ss_pred             CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHH-cCCCeEEEEEEE
Confidence            6888888 999999999  4443   333444443333 334467777765

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.22  E-value=0.4  Score=33.51  Aligned_cols=44  Identities=20%  Similarity=0.219  Sum_probs=31.9

Q ss_pred             CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      ||| + .-|++||+|++  |...++   .+++++.++.. ..=.|.+.+.|.
T Consensus        42 spA-~-agL~~GD~Il~--ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~   88 (96)
T 2edv_A           42 GSA-H-GKLFPGDQILQ--MNNEPAEDLSWERAVDILRE-AEDSLSITVVRC   88 (96)
T ss_dssp             SSS-T-TTSCTTCBEEE--ESSCBSTTCCHHHHHHHHHH-CSSCEEEEEEEC
T ss_pred             Cch-h-hCCCCCCEEEE--ECCEECCCCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence            567 4 78999999999  666554   46777777775 345677777764

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=89.98  E-value=0.29  Score=36.21  Aligned_cols=44  Identities=20%  Similarity=0.197  Sum_probs=30.5

Q ss_pred             CccccccccCCCCeeeEEEEeecccch---hhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHMVY---EDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~~y---EDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+ |++||+|++  |....+..   +|...+|+.. --.|.+.+.|
T Consensus        57 spA~~aG-L~~GD~Il~--Vng~~v~~~~~~dl~~~l~~~-g~~v~l~v~R  103 (118)
T 2yub_A           57 SPNNRNA-IHPGDRILE--INGTPVRTLRVEEVEDAIKQT-SQTLQLLIEH  103 (118)
T ss_dssp             CTTHHHH-CCTTCCEEE--ESSSBTTTSCHHHHHHHHHCC-SSCEEEEEEE
T ss_pred             ChHHHcC-CCCCCEEEE--ECCEECCCcCHHHHHHHHHhC-CCEEEEEEEE
Confidence            5676665 899999999  66655544   6777777765 3356666664

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=89.25  E-value=0.063  Score=39.33  Aligned_cols=45  Identities=29%  Similarity=0.380  Sum_probs=30.0

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEE
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIET   47 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l   47 (199)
                      |||+++.-|++||+|+++- ...+++..+|++.+|+.+. =.|.+.+
T Consensus        64 spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~~-~~v~l~V  109 (112)
T 2lob_A           64 QPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR-GEIEFEV  109 (112)
Confidence            6888878899999999942 2333445788888886433 2355544

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=89.65  E-value=0.24  Score=45.59  Aligned_cols=47  Identities=32%  Similarity=0.419  Sum_probs=36.5

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccc-eEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPY-EVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PY-kv~~~l~r   49 (199)
                      |||++.+ |++||+|+++ -+.++++..+++..+|+...|= .|.|.+.|
T Consensus        34 spA~~aG-L~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r   82 (468)
T 3shw_A           34 SPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQK   82 (468)
T ss_dssp             SHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEE
T ss_pred             CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence            7889888 9999999995 3567778899999999874332 46666666

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=88.68  E-value=0.41  Score=32.55  Aligned_cols=46  Identities=17%  Similarity=0.307  Sum_probs=29.0

Q ss_pred             CccccccccCCCCeeeEEEEeeccc-chhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM-VYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~-~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|++  |....+ .++|....|....-=.+.+.+.|.
T Consensus        15 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~l~~~~g~~v~l~v~R~   61 (91)
T 2zpm_A           15 SAASXAG-LQAGDRIVX--VDGQPLTQWVTFVMLVRDNPGXSLALEIERQ   61 (91)
T ss_dssp             SHHHHTT-CCTTCEEEE--ETTEECCCHHHHHHHHHHCTTCCEEEEEEET
T ss_pred             ChHHhcC-CCCCCEEEE--ECCeEcCCHHHHHHHHhcCCCCeEEEEEEEC
Confidence            5666654 999999999  544433 245666666654222567777663

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=88.05  E-value=0.42  Score=33.72  Aligned_cols=46  Identities=13%  Similarity=0.042  Sum_probs=31.1

Q ss_pred             CccccccccCCCCeeeEEEEeecccc-hhhHHhhhhcccc-ceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHMV-YEDALTILSYASP-YEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~P-Ykv~~~l~re   50 (199)
                      |||++.+ |++||+|++  |....+. ++|....|..+.+ =.|.+.+.|.
T Consensus        13 spA~~aG-l~~GD~I~~--ing~~v~~~~d~~~~l~~~~~~~~v~l~v~R~   60 (95)
T 3id1_A           13 SIAAEAQ-IAPGTELKA--VDGIETPDWDAVRLQLVDKIGDESTTITVAPF   60 (95)
T ss_dssp             SHHHHTT-CCTTCEEEE--ETTEECSSHHHHHHHHHHTTTCSEEEEEEECT
T ss_pred             CHHHHcC-CCCCCEEEE--ECCEECCCHHHHHHHHHHhcCCCcEEEEEEEC
Confidence            5666554 999999999  5555443 3566666665555 4688888764

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=87.85  E-value=0.69  Score=32.47  Aligned_cols=44  Identities=18%  Similarity=0.212  Sum_probs=32.5

Q ss_pred             ccccccCCCCeeeEEEEeec---ccchhhHHhhhhccc-cceEEEEEeee
Q psy11904          5 AETWALNNGDRITSVRISFR---HMVYEDALTILSYAS-PYEVQIETEKE   50 (199)
Q Consensus         5 ~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~-PYkv~~~l~re   50 (199)
                      |...-|++||+|++  |...   ++.++|+..+|+... -=.|.+.++|.
T Consensus        43 a~~aGL~~GD~I~~--vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~   90 (96)
T 1ujv_A           43 QGCPGLCEGDLIVE--INQQNVQNLSHTEVVDILKDCPIGSETSLIIHRG   90 (96)
T ss_dssp             GGSTTCCSSCEEEE--ETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECC
T ss_pred             cccCCCCCCCEEEE--ECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEEC
Confidence            45677999999999  5444   445689999998764 34678887764

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=87.43  E-value=0.46  Score=32.60  Aligned_cols=44  Identities=14%  Similarity=0.174  Sum_probs=27.4

Q ss_pred             ccccccccCCCCeeeEEEEeecccc-hhhHHhhhhcccc-ceEEEEEee
Q psy11904          3 HCAETWALNNGDRITSVRISFRHMV-YEDALTILSYASP-YEVQIETEK   49 (199)
Q Consensus         3 ~a~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~P-Ykv~~~l~r   49 (199)
                      ||++. -|++||.|++  |....+. .+|...+++...| =.|.+.+.|
T Consensus        31 ~A~~a-Gl~~GD~I~~--ing~~v~~~~d~~~~~~~~~~g~~v~l~v~R   76 (87)
T 2i6v_A           31 LFESI-GLQDGDMAVA--LNGLDLTDPNVMNTLFQSMNEMTEMSLTVER   76 (87)
T ss_dssp             HHHHT-TCCTTCEEEE--ETTEETTCHHHHHHHHHTGGGCSEEEEEEEE
T ss_pred             HHHHC-CCCCCCEEEE--ECCEECCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence            34554 4999999999  6555443 3455566665443 356677765

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=87.41  E-value=0.39  Score=42.11  Aligned_cols=47  Identities=19%  Similarity=0.156  Sum_probs=36.6

Q ss_pred             CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccc-cceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYAS-PYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~-PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|++  |...   ++..++++.+|.... .-.|.+.+.|.
T Consensus       243 spA~~aG~L~~GD~Il~--VnG~~v~~~~~~~~~~~l~~~~~~~~v~l~v~r~  293 (388)
T 3suz_A          243 GPAARSGKLSIGDQIMS--INGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSC  293 (388)
T ss_dssp             SHHHHTCCCCTTCEEEE--ETTEECSSCCSTTHHHHTTTCTTCSCEEEEEEEC
T ss_pred             CHHHHcCCCCCCCEEEE--ECCEEccCCCHHHHHHHHHhccCCCccccccccc
Confidence            78999999999999999  5544   445578899998773 34588888774

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=87.15  E-value=0.44  Score=44.96  Aligned_cols=48  Identities=21%  Similarity=0.191  Sum_probs=37.2

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ...+++..++++.+|..+. =.|.+.+.|.
T Consensus       100 spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g-~~v~l~v~R~  148 (721)
T 2xkx_A          100 GAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG-SIVRLYVMRR  148 (721)
T ss_pred             CHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhccc-cccceEEEec
Confidence            6889999999999999953 4566777789998887653 3677777664

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=86.96  E-value=0.3  Score=32.40  Aligned_cols=37  Identities=24%  Similarity=0.436  Sum_probs=28.8

Q ss_pred             cccchhhccccc-----CCCcCCcccccc-----------cCCcccCCCCCCC
Q psy11904        109 ESCKICRQKVHQ-----VGSHYCQACAYK-----------KGEHLVLVTADPE  145 (199)
Q Consensus       109 skCkiCK~kVhQ-----~G~kYCQ~CAYk-----------KGiCAMCGk~~~~  145 (199)
                      -.|.||......     =||.||..|..+           ...|.+|...++.
T Consensus        13 ~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A           13 VTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             CCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            478888765544     389999999874           6789999988765

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.89  E-value=0.42  Score=31.12  Aligned_cols=38  Identities=13%  Similarity=0.371  Sum_probs=29.0

Q ss_pred             cccchhhcccccC-----CCcCCccccc-----ccCCcccCCCCCCCC
Q psy11904        109 ESCKICRQKVHQV-----GSHYCQACAY-----KKGEHLVLVTADPEK  146 (199)
Q Consensus       109 skCkiCK~kVhQ~-----G~kYCQ~CAY-----kKGiCAMCGk~~~~~  146 (199)
                      -.|.||...+..+     ||.||..|..     ....|.+|.+.+...
T Consensus        16 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           16 YKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD   63 (66)
T ss_dssp             EECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred             CCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence            4799997765443     8999999976     345799999987753

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=86.80  E-value=0.56  Score=30.18  Aligned_cols=40  Identities=15%  Similarity=0.277  Sum_probs=28.7

Q ss_pred             cccchhhccccc-----CCCcCCcccccc-cCCcccCCCCCCCCCC
Q psy11904        109 ESCKICRQKVHQ-----VGSHYCQACAYK-KGEHLVLVTADPEKGD  148 (199)
Q Consensus       109 skCkiCK~kVhQ-----~G~kYCQ~CAYk-KGiCAMCGk~~~~~~~  148 (199)
                      -.|.||......     =||.||..|..+ ...|.+|.+..+...+
T Consensus         7 ~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~~~~~   52 (56)
T 1bor_A            7 LRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWPLGAD   52 (56)
T ss_dssp             SSCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSSCCSS
T ss_pred             CCceEeCCccCCeEEcCCCCcccHHHHccCCCCCCcCCcEeecCCc
Confidence            367777765433     388999999875 3579999988776443

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.61  E-value=0.35  Score=32.03  Aligned_cols=37  Identities=27%  Similarity=0.529  Sum_probs=29.6

Q ss_pred             cccchhhccccc-----CCCcCCcccccc----------cCCcccCCCCCCC
Q psy11904        109 ESCKICRQKVHQ-----VGSHYCQACAYK----------KGEHLVLVTADPE  145 (199)
Q Consensus       109 skCkiCK~kVhQ-----~G~kYCQ~CAYk----------KGiCAMCGk~~~~  145 (199)
                      -.|.||...+..     =||.||..|...          ...|.+|...++.
T Consensus        20 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           20 VTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             CCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            479999876543     389999999865          6789999988775

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=86.30  E-value=0.21  Score=32.46  Aligned_cols=37  Identities=22%  Similarity=0.418  Sum_probs=27.1

Q ss_pred             ccchhhc-cc---------ccCCCcCCccccccc-----CCcccCCCCCCCC
Q psy11904        110 SCKICRQ-KV---------HQVGSHYCQACAYKK-----GEHLVLVTADPEK  146 (199)
Q Consensus       110 kCkiCK~-kV---------hQ~G~kYCQ~CAYkK-----GiCAMCGk~~~~~  146 (199)
                      .|.||.. ..         ..=||.||..|..+-     ..|.+|++++...
T Consensus         5 ~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   56 (65)
T 1g25_A            5 GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             CCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             cCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence            6888877 21         234899999996433     6799999998764

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=85.71  E-value=0.63  Score=34.06  Aligned_cols=33  Identities=24%  Similarity=0.172  Sum_probs=24.7

Q ss_pred             CccccccccCCCCeeeEEEEeeccc---chhhHHhhhhc
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM---VYEDALTILSY   37 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~---~yEDAl~iL~~   37 (199)
                      |||++.+ |++||+|++  |....+   ..+|.-.+++.
T Consensus        46 spA~~aG-L~~GD~Il~--vng~~v~~~~~~~l~~~l~~   81 (94)
T 3kzd_A           46 GLASKKG-LKAGDEILE--INNRAADALNSSMLKDFLSQ   81 (94)
T ss_dssp             SHHHHTT-CCTTCEEEE--ETTEEGGGCCHHHHHHHHHS
T ss_pred             CHHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHhC
Confidence            7888877 999999999  554443   46777777763

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=85.03  E-value=0.91  Score=34.29  Aligned_cols=46  Identities=17%  Similarity=0.165  Sum_probs=30.6

Q ss_pred             CccccccccCCCCeeeEEEEeecccc---hhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHMV---YEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~~---yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|++  |....+.   .+.+..+++....=.|.+.+++.
T Consensus        38 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~~~~~~~~~~~v~l~vr~~   86 (166)
T 1w9e_A           38 SPASLVG-LRFGDQVLQ--INGENCAGWSSDKAHKVLKQAFGEKITMTIRDR   86 (166)
T ss_dssp             SHHHHTT-CCTTCEEEE--ETTEECTTCCHHHHHHHHHHCCSSEEEEEEECC
T ss_pred             ChHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHhcCCCCEEEEEEEcC
Confidence            6888877 999999999  5443332   22356677665444778887653

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=84.83  E-value=0.39  Score=31.80  Aligned_cols=37  Identities=27%  Similarity=0.567  Sum_probs=29.4

Q ss_pred             cccchhhccccc-----CCCcCCcccccc----------cCCcccCCCCCCC
Q psy11904        109 ESCKICRQKVHQ-----VGSHYCQACAYK----------KGEHLVLVTADPE  145 (199)
Q Consensus       109 skCkiCK~kVhQ-----~G~kYCQ~CAYk----------KGiCAMCGk~~~~  145 (199)
                      -.|.||...+..     =||.||..|...          ...|.+|...++.
T Consensus        20 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           20 VTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             TSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             CCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            479999876543     389999999765          6789999988765

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=84.69  E-value=0.72  Score=43.50  Aligned_cols=49  Identities=27%  Similarity=0.259  Sum_probs=37.1

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeeeh
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKEI   51 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~reI   51 (199)
                      |||++.+.|++||+|+++- ..++++..+|+..+|+.+ .=.|.+.+.|.-
T Consensus       342 s~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~-~~~v~L~v~r~~  391 (721)
T 2xkx_A          342 GPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA-GQTVTIIAQYKP  391 (721)
T ss_pred             ChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHhc-CCeEEEEEEeCc
Confidence            7899999999999999942 344555679999999865 445777776653

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=84.51  E-value=1.7  Score=30.40  Aligned_cols=44  Identities=16%  Similarity=0.143  Sum_probs=26.6

Q ss_pred             CccccccccCCCCeeeEEEEeec---ccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFR---HMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~---n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||+  .-|++||+|++  |...   ++...+++..+. ...-.|.+.+.|.
T Consensus        50 spA~--agl~~GD~I~~--vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~   96 (107)
T 2h2b_A           50 GPAE--GQLQENDRVAM--VNGVSMDNVEHAFAVQQLR-KSGKNAKITIRRK   96 (107)
T ss_dssp             STTB--TTBCTTCEEEE--ETTEECTTCCHHHHHHHHH-TCCSEEEEEEEEE
T ss_pred             Cchh--hCCCCCCEEEE--ECCEECCCccHHHHHHHhh-CCCCEEEEEEEEC
Confidence            5666  68999999999  5443   333344444443 2223567777654

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=84.12  E-value=1.6  Score=30.69  Aligned_cols=45  Identities=20%  Similarity=0.203  Sum_probs=31.2

Q ss_pred             CccccccccCCCCeeeEEEEeecccc-hhhHHhhhhcccc-ceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHMV-YEDALTILSYASP-YEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~P-Ykv~~~l~re   50 (199)
                      |||+ . -|++||+|++  |....+. .+|...+|+...| -.|.+.+.|.
T Consensus        18 spA~-~-GL~~GD~I~~--Ing~~v~~~~dl~~~l~~~~~g~~v~l~v~R~   64 (100)
T 3i18_A           18 VPAA-D-VLHAGDLITE--IDGNAFKSSQEFIDYIHSKKVGDTVKINYKHG   64 (100)
T ss_dssp             SGGG-G-TCCTTCEEEE--ETTBCCSSHHHHHHHHHTSCTTCEEEEEEEET
T ss_pred             CchH-H-CCCCCCEEEE--ECCEECCCHHHHHHHHHhCCCCCEEEEEEEEC
Confidence            6777 4 7999999999  5555443 3566777776544 4678887763

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=83.86  E-value=0.35  Score=39.73  Aligned_cols=45  Identities=18%  Similarity=0.158  Sum_probs=33.4

Q ss_pred             CccccccccCCCCeeeEEEEeecc---cchhhHHhhhhccccceE-EEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRH---MVYEDALTILSYASPYEV-QIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n---~~yEDAl~iL~~a~PYkv-~~~l~re   50 (199)
                      |||++.+ |++||+|++  |...+   +.++|+..+|+.. .-.| .+.+.|.
T Consensus        44 SpA~~aG-L~~GD~Il~--VNG~~V~~~s~~dl~~~l~~~-g~~v~~l~V~R~   92 (216)
T 2krg_A           44 SPAEASG-LRAQDRIVE--VNGVCMEGKQHGDVVSAIRAG-GDETKLLVVDRE   92 (216)
T ss_dssp             SHHHHHT-CCTTCBCCE--ETTEECTTCCTHHHHHHHHHH-CSEEEEEECCHH
T ss_pred             ChHHHcC-CCCCCEEEE--ECCEECCCCCHHHHHHHHHhc-CCeEEEEEEEEC
Confidence            6788888 999999999  55444   4588998888765 4456 6776653

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=83.30  E-value=0.72  Score=32.79  Aligned_cols=42  Identities=14%  Similarity=0.203  Sum_probs=26.6

Q ss_pred             ccccccCCCCeeeEEEEeecccc-hhhHHhhhhcccc-ceEEEEEee
Q psy11904          5 AETWALNNGDRITSVRISFRHMV-YEDALTILSYASP-YEVQIETEK   49 (199)
Q Consensus         5 ~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~P-Ykv~~~l~r   49 (199)
                      ++. -|++||.|++  |....+. .+|...+++...| =.|.+.+.|
T Consensus        51 ~~a-Gl~~GDvI~~--ing~~v~~~~d~~~~~~~~~~g~~v~l~v~R   94 (105)
T 2i4s_A           51 ESI-GLQDGDMAVA--LNGLDLTDPNVMNTLFQSMNEMTEMSLTVER   94 (105)
T ss_dssp             HHH-TCCTTCEEEE--ETTEETTSTTHHHHHHHHHTTCSEEEEEEEE
T ss_pred             HHc-CCCCCCEEEE--ECCEECCCHHHHHHHHHhcCCCCeEEEEEEE
Confidence            444 5999999999  5555443 3455666665443 356677665

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=81.81  E-value=1.1  Score=31.79  Aligned_cols=43  Identities=21%  Similarity=0.235  Sum_probs=27.7

Q ss_pred             CccccccccCCCCeeeEEEEeeccc-chhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM-VYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~-~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+ |++||.|++  |....+ ..+|...+|+..++  +.+.+.|
T Consensus        46 spA~~aG-l~~GD~I~~--ing~~v~~~~~~~~~l~~~~~--v~l~v~R   89 (113)
T 2pzd_A           46 SPAHRAG-LRPGDVILA--IGEQMVQNAEDVYEAVRTQSQ--LAVQIRR   89 (113)
T ss_dssp             SHHHHHT-CCTTCEEEE--ETTEECCSHHHHHHHHHHCSS--EEEEEEE
T ss_pred             ChHHHcC-CCCCCEEEE--ECCEECCCHHHHHHHHhCCCe--EEEEEEE
Confidence            6777765 999999999  444433 24566667765444  5555554

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.73  E-value=0.1  Score=34.73  Aligned_cols=47  Identities=21%  Similarity=0.289  Sum_probs=33.1

Q ss_pred             cccchhhccccc-----CCCcCCcccccc----cCCcccCCCCCCCCCCcceeeec
Q psy11904        109 ESCKICRQKVHQ-----VGSHYCQACAYK----KGEHLVLVTADPEKGDKFALISG  155 (199)
Q Consensus       109 skCkiCK~kVhQ-----~G~kYCQ~CAYk----KGiCAMCGk~~~~~~~~~~~i~g  155 (199)
                      ..|.||...+..     =||.||..|..+    ...|.+|...+....-..|..+|
T Consensus        16 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~p~~sg   71 (71)
T 2d8t_A           16 PECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDSGPSSG   71 (71)
T ss_dssp             CBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHSCSCSCC
T ss_pred             CCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhccCCCCCC
Confidence            478888775543     388999999753    46899999988765444444443

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.53  E-value=0.66  Score=30.73  Aligned_cols=39  Identities=13%  Similarity=0.326  Sum_probs=29.6

Q ss_pred             cccchhhcccc------cCCCcCCcccccc----cCCcccCCCCCCCCC
Q psy11904        109 ESCKICRQKVH------QVGSHYCQACAYK----KGEHLVLVTADPEKG  147 (199)
Q Consensus       109 skCkiCK~kVh------Q~G~kYCQ~CAYk----KGiCAMCGk~~~~~~  147 (199)
                      -.|.||...+.      .=||.||..|..+    ...|.+|.+.+....
T Consensus        16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~   64 (72)
T 2djb_A           16 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ   64 (72)
T ss_dssp             GSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred             CCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence            47888877543      4488899999743    678999999887643

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=81.48  E-value=0.56  Score=32.21  Aligned_cols=37  Identities=22%  Similarity=0.471  Sum_probs=27.3

Q ss_pred             cccchhhccccc----C--CCcCCccccccc------CCcccCCCCCCC
Q psy11904        109 ESCKICRQKVHQ----V--GSHYCQACAYKK------GEHLVLVTADPE  145 (199)
Q Consensus       109 skCkiCK~kVhQ----~--G~kYCQ~CAYkK------GiCAMCGk~~~~  145 (199)
                      -.|.||...+..    +  ||.||..|...-      ..|.+|.+++..
T Consensus        14 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~   62 (92)
T 3ztg_A           14 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS   62 (92)
T ss_dssp             TEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCC
T ss_pred             CCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCC
Confidence            479999875543    2  999999997432      489999988643

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=81.32  E-value=0.73  Score=29.81  Aligned_cols=36  Identities=17%  Similarity=0.367  Sum_probs=27.3

Q ss_pred             cccchhhcccccC------CCcCCcccccc----cCCcccCCCCCC
Q psy11904        109 ESCKICRQKVHQV------GSHYCQACAYK----KGEHLVLVTADP  144 (199)
Q Consensus       109 skCkiCK~kVhQ~------G~kYCQ~CAYk----KGiCAMCGk~~~  144 (199)
                      ..|.||......+      ||.||..|..+    ...|.+|..++.
T Consensus         6 ~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~   51 (68)
T 1chc_A            6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence            4688887665442      78899999853    678999998775

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=81.08  E-value=0.31  Score=32.55  Aligned_cols=37  Identities=14%  Similarity=0.103  Sum_probs=27.4

Q ss_pred             cccchhhccccc-----CCCcCCcccccc-----cCCcccCCCCCCC
Q psy11904        109 ESCKICRQKVHQ-----VGSHYCQACAYK-----KGEHLVLVTADPE  145 (199)
Q Consensus       109 skCkiCK~kVhQ-----~G~kYCQ~CAYk-----KGiCAMCGk~~~~  145 (199)
                      -.|.||..-...     -||.||..|..+     ...|.+|+++++.
T Consensus         9 ~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~   55 (78)
T 1t1h_A            9 FRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             CCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence            478888765433     389999999642     5689999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	199
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	98.03
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	98.0
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	97.91
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	97.9
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	97.89
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	97.88
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	97.85
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	97.79
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	97.78
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	97.75
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	97.75
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	97.71
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	97.68
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	97.67
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	97.57
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	97.52
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	97.5
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	97.5
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	97.42
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	97.38
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	97.38
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	97.35
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	97.35
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	97.35
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	97.32
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	97.27
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	97.19
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	97.12
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	97.07
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	97.05
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	97.03
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.0
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	96.94
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	96.94
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	96.92
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	96.89
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	96.82
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	96.78
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	96.74
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	96.73
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	96.72
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	96.6
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	96.5
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	96.38
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	96.34
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	96.32
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	96.31
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	96.29
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	96.27
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	96.27
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	96.17
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	95.98
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	95.97
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	95.91
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	95.87
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	95.84
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	95.82
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	95.8
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	95.61
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	95.59
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	95.53
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	95.42
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	92.12
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	89.05
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	88.14
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	86.37
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	84.8
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	80.64
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	80.4

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.5e-06  Score=61.07  Aligned_cols=48  Identities=25%  Similarity=0.278  Sum_probs=42.8

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++++.|++||+|+++ -++++|+.+++|+.+|+.+.+ .|.|.+.|+
T Consensus        42 g~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~~~-~v~L~v~R~   90 (92)
T d1t2ma1          42 GAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSS-VVTLEVAKQ   90 (92)
T ss_dssp             SHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSCCS-EEEEEEEEC
T ss_pred             ChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcCCC-eEEEEEEeC
Confidence            789999999999999998 688999999999999998754 599988874

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=2e-06  Score=60.50  Aligned_cols=48  Identities=21%  Similarity=0.265  Sum_probs=43.5

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++++.|++||+|+++ .++++++.+++|+.+|+.+ +-.|.|.++|.
T Consensus        48 g~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~~lk~~-~~~v~L~v~R~   96 (99)
T d1ozia_          48 GAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT-GQVVHLLLEKG   96 (99)
T ss_dssp             SHHHHHTCCCTTCEEEEETTEECSSCCHHHHHHHHHHS-CSEEEEEEECC
T ss_pred             ChHHhcCCCCccCEEEEECCEEcCCCCHHHHHHHHHCC-CCeEEEEEEeC
Confidence            789999999999999998 7899999999999999976 56899999874

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=3.6e-06  Score=60.29  Aligned_cols=51  Identities=14%  Similarity=0.219  Sum_probs=45.0

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhcccc-ceEEEEEeeehh
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASP-YEVQIETEKEIY   52 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~P-Ykv~~~l~reIy   52 (199)
                      |||++++.|++||+|+++- ++++++.++||+.+|+.+.+ -.|.+.+.|++.
T Consensus        45 ~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~~~~v~l~v~r~~~   97 (103)
T d1uepa_          45 GSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVL   97 (103)
T ss_dssp             STTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             ChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEEeCCC
Confidence            7999999999999999984 89999999999999998765 478898888754

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=3.7e-06  Score=59.15  Aligned_cols=47  Identities=28%  Similarity=0.239  Sum_probs=43.0

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+.|++||+|+++ .++++++.++||+.+|+.+. -.|.|.+++
T Consensus        41 ~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~-~~v~l~v~~   88 (90)
T d1qava_          41 LAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTG-KEVVLEVKY   88 (90)
T ss_dssp             SHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCC-SEEEEEEEE
T ss_pred             CceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEE
Confidence            789999999999999998 78999999999999999875 579999875

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.89  E-value=4.1e-06  Score=58.51  Aligned_cols=47  Identities=19%  Similarity=0.322  Sum_probs=42.5

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+.|++||+|+++- ++.+++.+++|+.+|+. +|..|.|.++|
T Consensus        46 s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~-~~~~v~L~V~R   93 (94)
T d1ihja_          46 SPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE-ADFKIELEIQT   93 (94)
T ss_dssp             SHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH-SCSEEEEEEEE
T ss_pred             CHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEe
Confidence            7899999999999999983 78899999999999996 57899999987

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=4.6e-06  Score=58.32  Aligned_cols=48  Identities=21%  Similarity=0.272  Sum_probs=42.8

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++++.|++||+|+++ -++++|+.++||+.+|+.+ |-.|.|.+.|.
T Consensus        42 g~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~-~~~v~L~v~Rp   90 (92)
T d2fe5a1          42 GAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT-SDMVYLKVAKP   90 (92)
T ss_dssp             SHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC-CSEEEEEEECC
T ss_pred             CChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcC-CCEEEEEEECC
Confidence            789999999999999998 6789999999999999975 56799998873

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=4.5e-06  Score=59.94  Aligned_cols=49  Identities=22%  Similarity=0.325  Sum_probs=43.2

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeeeh
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKEI   51 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~reI   51 (199)
                      |||++.+.|++||+|+++ .+..+++.+++|+.+|+.+. =.|.|.++|..
T Consensus        49 s~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~-~~v~l~v~R~~   98 (105)
T d1whaa_          49 GAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAAS-PTIALLLEREA   98 (105)
T ss_dssp             SSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCC-SCEEEEEEECC
T ss_pred             CchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHHcCC-CeEEEEEEECC
Confidence            689999999999999998 67889999999999999765 47999998753

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=8.5e-06  Score=57.14  Aligned_cols=48  Identities=21%  Similarity=0.206  Sum_probs=42.8

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++++.|++||+|+++ -++.+|+.+++|+.+|+.+.. .|.|.+.|.
T Consensus        44 g~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~-~v~L~V~R~   92 (94)
T d1wf8a1          44 GAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKG-NVRFVIGRE   92 (94)
T ss_dssp             CHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCCS-EEEEEEEEE
T ss_pred             ChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCC-eEEEEEEeC
Confidence            789999999999999997 578889999999999997765 699999875

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=8.2e-06  Score=58.55  Aligned_cols=48  Identities=17%  Similarity=0.180  Sum_probs=42.7

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++ -+.++++.+++|+.+|+.+ +-.|.|.+.|.
T Consensus        52 s~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~lk~~-~~~v~l~v~r~  100 (107)
T d1uhpa_          52 GPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTA-KEPIVVQVLRR  100 (107)
T ss_dssp             SHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHC-CSSEEEEEEEC
T ss_pred             CHHHHhCCCcceeEEeEECCEECCCCCHHHHHHHHHhC-CCcEEEEEEEC
Confidence            789999999999999998 7899999999999999865 56788888764

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.75  E-value=1e-05  Score=56.39  Aligned_cols=49  Identities=20%  Similarity=0.160  Sum_probs=42.7

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeeeh
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKEI   51 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~reI   51 (199)
                      |||++.+.|++||+|+++- ++.+|+.+++|+.+|+.+ +-.|.|.+.|+.
T Consensus        42 g~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~-~~~v~L~v~R~~   91 (93)
T d1rgra_          42 GAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA-GSIVRLYVMRRK   91 (93)
T ss_dssp             SHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHT-TTEEEEEEECSC
T ss_pred             ChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeCC
Confidence            7899999999999999973 788899999999999865 457999998864

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=9.6e-06  Score=56.92  Aligned_cols=49  Identities=27%  Similarity=0.303  Sum_probs=42.3

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeeeh
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKEI   51 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~reI   51 (199)
                      |||++.+.|++||+|+++ -++.+|+.+++|+.+|+.+ +-.|.+.++|-|
T Consensus        47 s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~~-~~~v~L~V~r~i   96 (96)
T d2fcfa1          47 SPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKA-GNPVVFMVQSII   96 (96)
T ss_dssp             SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSSEEEEEECCC
T ss_pred             CHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEcC
Confidence            799999999999999996 4678899999999999855 568999988743

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=1.1e-05  Score=59.18  Aligned_cols=49  Identities=22%  Similarity=0.296  Sum_probs=43.7

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeeeh
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKEI   51 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~reI   51 (199)
                      |||++.+.|++||+|+++ -+.++|+.+++|+.+|+.+.+ .|.|.++|.+
T Consensus        60 s~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~i~~~~~-~v~l~v~r~~  109 (117)
T d1ujda_          60 GSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSG-EAEICVRLDL  109 (117)
T ss_dssp             CHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSS-CEEEEEESSC
T ss_pred             CHHHHcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCC-eEEEEEEECC
Confidence            689999999999999998 678999999999999998765 5999998764

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.1e-05  Score=57.86  Aligned_cols=48  Identities=25%  Similarity=0.250  Sum_probs=42.3

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++ -++.+++.+++|+.+|+.+ |..|+|.+.|.
T Consensus        47 g~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~-~~~v~l~v~r~   95 (110)
T d1um1a_          47 SPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHG-GKKMRFLVAKS   95 (110)
T ss_dssp             SHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTC-CSEEEEEEECC
T ss_pred             CHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeC
Confidence            789999999999999997 5678888999999999876 67899998764

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=1.3e-05  Score=59.00  Aligned_cols=51  Identities=14%  Similarity=0.180  Sum_probs=44.7

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeeehh
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKEIY   52 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~reIy   52 (199)
                      +||++.+.|++||+|+++ -+.++++.++||+.+|+.+.+..|.+.++|+..
T Consensus        68 g~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~~~~~v~l~v~r~~~  119 (130)
T d1i16a_          68 AASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSL  119 (130)
T ss_dssp             CCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEESS
T ss_pred             ChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcCCCCeEEEEEEcCCC
Confidence            689999999999999995 367899999999999998777789999987643

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=2e-05  Score=56.94  Aligned_cols=48  Identities=17%  Similarity=0.168  Sum_probs=41.1

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccc-eEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPY-EVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PY-kv~~~l~r   49 (199)
                      |||++.+.|++||+|+++- +.++|+.+++|+.+|+.+.+. .|++.+.|
T Consensus        58 g~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l~v~R  107 (108)
T d2cssa1          58 SLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSR  107 (108)
T ss_dssp             SHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEEEEEE
T ss_pred             CchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEeC
Confidence            7899999999999999976 778899999999999987654 57777665

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.52  E-value=2.8e-05  Score=54.58  Aligned_cols=49  Identities=24%  Similarity=0.363  Sum_probs=41.3

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhcc--ccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYA--SPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a--~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- ++.+|+.+++|+.+|+.+  .|=.|.+.+.|.
T Consensus        40 g~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~~~~v~L~V~R~   91 (92)
T d2f0aa1          40 GAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLTVAKL   91 (92)
T ss_dssp             SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHSSSCEEEEEECC
T ss_pred             CcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEeC
Confidence            7899999999999999975 788899999999999865  344588887763

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.50  E-value=3.6e-05  Score=54.28  Aligned_cols=48  Identities=27%  Similarity=0.381  Sum_probs=41.6

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- .+.+|+.+++|+.+|+.+.. .|.+.++|+
T Consensus        49 g~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~~~~-~v~L~V~r~   97 (99)
T d1p1da2          49 SVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCED-LVKLKIRKD   97 (99)
T ss_dssp             SHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTT-CEEEEEECC
T ss_pred             chhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHcCCC-eEEEEEEeC
Confidence            7899999999999999963 57788999999999998754 599999875

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=2.3e-05  Score=56.13  Aligned_cols=49  Identities=16%  Similarity=0.215  Sum_probs=43.0

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeeeh
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKEI   51 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~reI   51 (199)
                      |||++...|++||+|+++ -+...++.+++|+.+|+. .|-.|.+.++|..
T Consensus        47 g~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~-~~~~v~l~v~R~~   96 (103)
T d1wfva_          47 GPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKS-GGRRVRLLLKRGT   96 (103)
T ss_dssp             SHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHH-HCSEECEEEECTT
T ss_pred             ChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHc-CCCEEEEEEEECC
Confidence            688999999999999997 567899999999999985 5789999998743

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.42  E-value=4.8e-05  Score=53.87  Aligned_cols=47  Identities=13%  Similarity=0.126  Sum_probs=41.1

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+.|++||+|+++ -++++++.++||+.+|+.+ +-.|.+.++.
T Consensus        49 g~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~l~~~-~~~v~l~v~p   96 (98)
T d1rzxa_          49 GLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVAN-SSNLIITVKP   96 (98)
T ss_dssp             CHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHT-CTEEEEEEEC
T ss_pred             ChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHHHHcC-CCeEEEEEEe
Confidence            789999999999999998 6889999999999999854 5688887763

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.38  E-value=2.8e-05  Score=54.94  Aligned_cols=37  Identities=27%  Similarity=0.489  Sum_probs=33.0

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhcc
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYA   38 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a   38 (199)
                      |||++.+.|++||+|+++ -++..|+.+++|+.+|+.+
T Consensus        45 g~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~   82 (96)
T d1wi4a1          45 GDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRA   82 (96)
T ss_dssp             SHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHS
T ss_pred             CccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence            789999999999999996 4577888999999999876

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.38  E-value=5.5e-05  Score=53.98  Aligned_cols=45  Identities=24%  Similarity=0.406  Sum_probs=39.0

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+ |++||+|+++ -++++++.+++|+.+|+.+.  .|.+.+++
T Consensus        52 s~A~~~G-L~~GD~Il~VNg~~v~~~~~~ev~~llk~~~--~v~l~V~~   97 (104)
T d1wi2a_          52 SDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTAR--EISMRVRF   97 (104)
T ss_dssp             SHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHHSS--SEEEEEEC
T ss_pred             ChhHhcc-cccCCEEEEECCEECCCCCHHHHHHHHhcCC--eEEEEEEE
Confidence            7888888 9999999997 67999999999999998764  58887765

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=9.6e-05  Score=52.95  Aligned_cols=47  Identities=21%  Similarity=0.334  Sum_probs=40.7

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeeeh
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKEI   51 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~reI   51 (199)
                      |||++  .|++||+|+++ -.+++|+.+++|+.+|+.+.. .|.|.+.|.+
T Consensus        54 s~A~~--~L~~GD~Il~VNg~~v~~~t~~eav~~l~~~~~-~v~L~V~R~~  101 (103)
T d2h3la1          54 GPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQN-TVELIIVREV  101 (103)
T ss_dssp             STTTT--TCCTTCEEEEETTEECSSCCHHHHHHHHHHCCS-EEEEEEEEEE
T ss_pred             ChHHh--ccCCCCEEEEECCEECCCCCHHHHHHHHHhCCC-eEEEEEEEEC
Confidence            67876  49999999997 578999999999999998755 7999998875

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=5.4e-05  Score=54.02  Aligned_cols=47  Identities=19%  Similarity=0.245  Sum_probs=40.0

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEe
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETE   48 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~   48 (199)
                      |||++.+.|++||+|+++ -.+++++..++|+.+|+.+.+..+-.-+.
T Consensus        46 s~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~~l~v~~   93 (107)
T d1x6da1          46 GLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVT   93 (107)
T ss_dssp             SHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEE
T ss_pred             CHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCCCCEEEEEEE
Confidence            789999999999999998 67899999999999999887665544444

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=1.9e-05  Score=56.98  Aligned_cols=48  Identities=15%  Similarity=0.119  Sum_probs=41.1

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++ -++.+|+.++||+.+|+.+ +-.|.|.+.|.
T Consensus        55 g~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~~-~~~v~L~V~r~  103 (111)
T d1ujua_          55 GAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSV-GDTLTVLVCDG  103 (111)
T ss_dssp             SHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSSC-SSEEEECCCCC
T ss_pred             ChHHHcCCCccceeeeeeCCcccCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence            689999999999999996 5678888999999999865 66888887764

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.32  E-value=4e-05  Score=56.59  Aligned_cols=46  Identities=22%  Similarity=0.320  Sum_probs=38.5

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEe
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETE   48 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~   48 (199)
                      |||++.+.|++||+|+++ .+.++++.++||+++|+.+ |-.+++.++
T Consensus        56 g~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~-~~~~~l~l~  102 (122)
T d1v5qa_          56 SPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS-SITSKVTLE  102 (122)
T ss_dssp             SHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHH-TTTTCEEEE
T ss_pred             CHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcC-CCceEEEEE
Confidence            789999999999999998 4899999999999999876 444444444

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.27  E-value=0.0001  Score=52.17  Aligned_cols=39  Identities=21%  Similarity=0.328  Sum_probs=35.5

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhcccc
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASP   40 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~P   40 (199)
                      |||++.+.|++||+|+++ ...++++.++||+.+|+.+.+
T Consensus        37 gpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~   76 (112)
T d1qaua_          37 GAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIAS   76 (112)
T ss_dssp             SHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCS
T ss_pred             CHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCC
Confidence            789999999999999997 478999999999999998765

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00011  Score=53.18  Aligned_cols=47  Identities=28%  Similarity=0.311  Sum_probs=41.5

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+.|++||+|+++ .+.++|+.+++|+.+|+.+ +-.|+|.+.+
T Consensus        53 g~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~-~~~v~l~v~~  100 (117)
T d1v62a_          53 SVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASI-SEKVRLEILP  100 (117)
T ss_dssp             SHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSC-SSEEEEEECC
T ss_pred             CHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHcC-CCcEEEEEEE
Confidence            678899999999999998 7889999999999999864 6778888864

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.12  E-value=0.00025  Score=52.65  Aligned_cols=49  Identities=20%  Similarity=0.196  Sum_probs=40.8

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhcccc-ceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASP-YEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~P-Ykv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- +..+++.++||+.+|+.+.+ -.|++.+.|.
T Consensus        60 g~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~~g~~v~L~v~R~  110 (126)
T d1wifa_          60 GAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRG  110 (126)
T ss_dssp             SSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESS
T ss_pred             ChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCCCCCEEEEEEEeC
Confidence            7999999999999999931 33477889999999997643 7899999875

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00017  Score=51.45  Aligned_cols=48  Identities=25%  Similarity=0.264  Sum_probs=40.8

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++...|++||+|+++- +..+++.+++|+.+|+.+ +-.|.|.+.|.
T Consensus        54 g~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll~~~-~~~v~l~V~r~  102 (114)
T d1uewa_          54 SPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDA-GLSVTLRIIPQ  102 (114)
T ss_dssp             CTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHHT-TTEEEEEECCC
T ss_pred             CHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHHHHcC-CCeEEEEEEeC
Confidence            6899999999999999973 778889999999999854 55788888753

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00017  Score=52.08  Aligned_cols=46  Identities=15%  Similarity=0.275  Sum_probs=39.3

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEe
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETE   48 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~   48 (199)
                      |||++.+ |++||+|+++- +..+++.+++++.+|+.+..-.|.+.+.
T Consensus        47 spA~~~G-L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~~v~l~v~   93 (111)
T d1vaea_          47 CSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVV   93 (111)
T ss_dssp             SSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEE
T ss_pred             ChHHhcc-cCcccEEEEECCEEcCCCCHHHHHHHHHcCCCCeEEEEEE
Confidence            7888888 99999999975 6778999999999998876667777664

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00022  Score=52.72  Aligned_cols=45  Identities=22%  Similarity=0.360  Sum_probs=37.5

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||.+.+ |++||+|+++ -++++|+.+++|+.+|+.+.  .|.+.+++
T Consensus        57 ~~A~~~g-L~~GD~Il~INg~~v~~~s~~evv~~lr~~~--~v~l~v~~  102 (128)
T d1uf1a_          57 SEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSSR--HLILTVKD  102 (128)
T ss_dssp             CHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCS--EEEEEEEC
T ss_pred             ChHHhcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCC--cEEEEEEE
Confidence            5677776 9999999998 78999999999999998764  56666654

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00029  Score=48.21  Aligned_cols=47  Identities=15%  Similarity=0.123  Sum_probs=40.2

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++++ |++||+|+++ -....++..++++.+|+.+....|.+.+++
T Consensus        36 spA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~~v~l~v~~   83 (85)
T d1w9ea1          36 SPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRD   83 (85)
T ss_dssp             SHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEEC
T ss_pred             CHHHHcC-CCCccEEEEECCEEeCCCCHHHHHHHHhcCCCCEEEEEEeC
Confidence            7888887 9999999997 467778889999999998777889888864

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00021  Score=50.60  Aligned_cols=46  Identities=28%  Similarity=0.279  Sum_probs=37.6

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhcc-ccceEEEEE
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYA-SPYEVQIET   47 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a-~PYkv~~~l   47 (199)
                      |||++.+.|++||+|+++ -++++|+.+++|+.+|+.+ ..-++.+.+
T Consensus        49 s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~~~~~~~l~l~v   96 (99)
T d1x5ra1          49 SPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAALAHKVVLEV   96 (99)
T ss_dssp             SHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHHHHTTTCEEEEE
T ss_pred             ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEE
Confidence            789999999999999998 6899999999999999855 333444443

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00034  Score=48.89  Aligned_cols=47  Identities=21%  Similarity=0.258  Sum_probs=40.4

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|+++- .++.|+.+++|+.+|+.+ +-.|.+.+.|+
T Consensus        50 g~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~   97 (97)
T d1x5qa1          50 GPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGA-GTAVQMRVWRE   97 (97)
T ss_dssp             SHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHSC-CSEEEEEEEEC
T ss_pred             ChhHhhc-ccCCCEEEEECCEECCCCCHHHHHHHHhCC-CCEEEEEEEEC
Confidence            6888888 99999999963 567899999999999774 67999999885

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.92  E-value=0.00023  Score=52.72  Aligned_cols=49  Identities=12%  Similarity=0.095  Sum_probs=41.3

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhcccc------ceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASP------YEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~P------Ykv~~~l~re   50 (199)
                      +||++.+.|++||+|+++- .+++|+.+++|+.+|+.+.+      -.|.|.+.|+
T Consensus        66 g~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~~~~~~~~~V~L~V~R~  121 (127)
T d1wg6a_          66 GAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRR  121 (127)
T ss_dssp             SSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred             CchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhcccccCCCCCEEEEEEeeC
Confidence            6899999999999999962 57788899999999998753      4688888775

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.89  E-value=0.00037  Score=49.85  Aligned_cols=47  Identities=23%  Similarity=0.319  Sum_probs=39.4

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||+ ...|++||+|+++ -...+++.+++|+.+|+.+ +-.|.|.+.|.
T Consensus        40 ~~A~-~~~L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~-~~~v~l~V~R~   87 (103)
T d1v5la_          40 SKAA-AANLCPGDVILAIDGFGTESMTHADAQDRIKAA-SYQLCLKIDRA   87 (103)
T ss_dssp             STTG-GGTCCTTCBEEEETTEECSSCCHHHHHHHHTTC-CSEEECEECCC
T ss_pred             ChHH-hCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEEC
Confidence            5665 4569999999997 5788999999999999875 77899998863

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00041  Score=47.94  Aligned_cols=46  Identities=17%  Similarity=0.171  Sum_probs=37.7

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEe
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETE   48 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~   48 (199)
                      |||++++.|++||+|+++ ..+..|+.+++|+.+|+.+. =.|.|.+-
T Consensus        36 g~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~-~~v~L~i~   82 (88)
T d1kwaa_          36 GMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMR-GSITFKIV   82 (88)
T ss_dssp             SHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCC-EEEEEEEE
T ss_pred             CHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCC-CcEEEEEE
Confidence            799999999999999995 25677889999999998764 35776653

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.78  E-value=0.00054  Score=47.91  Aligned_cols=48  Identities=25%  Similarity=0.350  Sum_probs=40.3

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++ -+...++.+++|+.+|+.+ +=.|.|.+.|.
T Consensus        39 ~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~-~~~v~l~v~r~   87 (95)
T d1n7ea_          39 GLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMA-GETVTLKIKKQ   87 (95)
T ss_dssp             SHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEECC
T ss_pred             ChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence            688999999999999996 2567889999999999965 44688888764

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.74  E-value=0.00058  Score=47.77  Aligned_cols=47  Identities=15%  Similarity=0.263  Sum_probs=38.8

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++ ..|++||+|+++- +.+.|+.+++|+.+|+.+ +-.|.+.++|.
T Consensus        41 s~A~~-~gL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~-~~~v~L~V~R~   88 (94)
T d1vb7a_          41 GKAEA-ADLRPGDIIVAINGQSAENMLHAEAQSKIRQS-ASPLRLQLDRS   88 (94)
T ss_dssp             SSHHH-HTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSSEEEEEECC
T ss_pred             Chhhh-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence            67776 5599999999963 567889999999999875 56899999874

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00062  Score=46.72  Aligned_cols=47  Identities=21%  Similarity=0.349  Sum_probs=38.1

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++ ..|++||+|+++- ...+++.+++|+.+|+.+ +-.|.+.++|.
T Consensus        36 s~A~~-~~L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~-~~~v~L~V~R~   83 (85)
T d1rgwa_          36 SKAAQ-SQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA-SYNLSLTLQKS   83 (85)
T ss_dssp             SHHHH-SSCCCCSBEEEETTEECTTCCHHHHHHHHTTC-SSCEEEEEESC
T ss_pred             ChHHh-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEEC
Confidence            56765 5699999999953 567889999999999876 45899998874

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.72  E-value=0.00057  Score=48.66  Aligned_cols=48  Identities=27%  Similarity=0.282  Sum_probs=40.5

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|+++- +.++++.+++|+.+|+.+ +-.|.+.+.+.
T Consensus        44 s~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~-~~~v~L~v~~~   92 (102)
T d1tp5a1          44 GPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA-GQTVTIIAQYK   92 (102)
T ss_dssp             SHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTS-CSEEEEEEEEC
T ss_pred             chHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence            7899999999999999963 578899999999999854 66788887653

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00041  Score=49.53  Aligned_cols=37  Identities=22%  Similarity=0.225  Sum_probs=33.9

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhcc
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYA   38 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a   38 (199)
                      |||++.+.|++||+|+++ -+..+++.+++|+.+|+.+
T Consensus        43 g~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a   80 (103)
T d1ufxa_          43 GSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEA   80 (103)
T ss_dssp             SHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHH
T ss_pred             cchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHc
Confidence            789999999999999997 5788899999999999986

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.001  Score=45.98  Aligned_cols=45  Identities=20%  Similarity=0.259  Sum_probs=36.1

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhcccc-ceEEEE
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASP-YEVQIE   46 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~P-Ykv~~~   46 (199)
                      |||++++.|++||+|+++- .+..|+.+++|+.+|+.+.. =.|.|.
T Consensus        37 g~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~v~L~   83 (85)
T d1x45a1          37 GPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLN   83 (85)
T ss_dssp             CHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEEEEE
T ss_pred             CHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEE
Confidence            7899999999999999953 56788999999999987643 234443

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0012  Score=45.55  Aligned_cols=45  Identities=27%  Similarity=0.331  Sum_probs=37.1

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEE
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIET   47 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l   47 (199)
                      |||++...|++||+|+++- +..+|+.+++|+.+|+.+ +-.|.|.+
T Consensus        41 g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~-~~~v~L~V   86 (88)
T d2fnea1          41 GAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT-KGTVTLMV   86 (88)
T ss_dssp             SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC-CSSEEEEE
T ss_pred             ChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEE
Confidence            7899999999999999963 577889999999999876 44566654

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.34  E-value=0.001  Score=48.60  Aligned_cols=48  Identities=13%  Similarity=0.077  Sum_probs=38.3

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccc---cceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYAS---PYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~---PYkv~~~l~r   49 (199)
                      |||++.+.|++||+|+++- +.++|+.+++|+.+|+.+.   .=.|.+.+.|
T Consensus        54 g~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~~~V~L~v~r  105 (118)
T d1v6ba_          54 GAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAV  105 (118)
T ss_dssp             SHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred             ChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcccCCCCEEEEEEEe
Confidence            6899999999999999952 4677888999999998762   3347777665

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0017  Score=47.45  Aligned_cols=49  Identities=12%  Similarity=0.169  Sum_probs=40.8

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccc-cceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYAS-PYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~-PYkv~~~l~re   50 (199)
                      +||++...|++||+|+++- ....++..++|..+|+-+. .=.|++.+.|.
T Consensus        55 g~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~~g~~v~L~v~R~  105 (123)
T d1ueqa_          55 GPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRG  105 (123)
T ss_dssp             SHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEES
T ss_pred             CHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEcC
Confidence            6899999999999999952 5667788999999999875 35688888864

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0011  Score=47.19  Aligned_cols=44  Identities=27%  Similarity=0.404  Sum_probs=36.4

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEe
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETE   48 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~   48 (199)
                      |||++.. |++||+|+++. .++.+|..++|+.+|+.+.+  +.+.+.
T Consensus        45 s~A~~~g-L~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~~--~~l~v~   89 (101)
T d1x5na1          45 SLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRS--LTISIV   89 (101)
T ss_dssp             STTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHCSS--EEEEEC
T ss_pred             ChHHhCC-CCcccEEEEECCEECCCCCHHHHHHHHhCCCC--EEEEEE
Confidence            6888765 99999999987 88999999999999988754  555554

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.29  E-value=0.0013  Score=46.50  Aligned_cols=45  Identities=16%  Similarity=0.227  Sum_probs=37.6

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEE
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIET   47 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l   47 (199)
                      |||++.+.|++||+|+++- ++..++.+++|+.+|+-+. -.|.|.+
T Consensus        52 s~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~-~~v~L~v   97 (100)
T d1va8a1          52 GAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH-GTLTFVL   97 (100)
T ss_dssp             SHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-EEEEEEE
T ss_pred             ChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCC-CeEEEEE
Confidence            7899999999999999964 5778899999999998764 4476654

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.27  E-value=0.0015  Score=46.41  Aligned_cols=45  Identities=18%  Similarity=0.182  Sum_probs=37.2

Q ss_pred             ccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          5 AETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         5 ~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      ++...|++||+|+++- +..+++.+++|+.+|..+ +-.|+|.++|.
T Consensus        42 a~~~~L~~GD~Il~INg~~v~~~t~~eav~li~~~-~~~v~L~v~R~   87 (103)
T d1wf7a_          42 ASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKAC-TGSLNMTLQRA   87 (103)
T ss_dssp             HHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHC-SSEEEEEECCC
T ss_pred             HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence            4457899999999962 567788999999999875 67899999874

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0012  Score=46.87  Aligned_cols=50  Identities=10%  Similarity=0.132  Sum_probs=39.7

Q ss_pred             Cccccc-cccCCCCeeeEE-EEeecccchhhHHhhhhccc---cceEEEEEeeeh
Q psy11904          2 SHCAET-WALNNGDRITSV-RISFRHMVYEDALTILSYAS---PYEVQIETEKEI   51 (199)
Q Consensus         2 s~a~~~-~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~---PYkv~~~l~reI   51 (199)
                      |||+++ ..|++||+|+++ -+..+++.+++|+.+|+.+.   ...|.+.+++.-
T Consensus        45 ~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~~~~~~~v~L~vrp~~   99 (106)
T d2cs5a1          45 TPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNA   99 (106)
T ss_dssp             STTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECCC
T ss_pred             CcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCCcEEEEEECCCC
Confidence            788884 789999999996 46778899999999998753   356777777543

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0023  Score=43.16  Aligned_cols=48  Identities=10%  Similarity=0.120  Sum_probs=39.0

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeeeh
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKEI   51 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~reI   51 (199)
                      |||++.+ |++||+|+++- +.-+++.+++++.+++ ++|=.+.+.+.|.|
T Consensus        29 spA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~i~-~~~~~v~L~v~R~v   77 (77)
T d2f5ya1          29 GPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIR-SCPSEIILLVWRMV   77 (77)
T ss_dssp             SHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHH-TCSSEEEEEEEECC
T ss_pred             CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH-CCCCEEEEEEEEEC
Confidence            7888888 99999999952 4567788899988886 56778999988754

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0021  Score=44.10  Aligned_cols=44  Identities=20%  Similarity=0.121  Sum_probs=36.5

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEE
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIET   47 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l   47 (199)
                      |||++.+ |++||+|+++- .+.+|+.+++|+.+|+.+. =.|.+.+
T Consensus        34 ~~A~~~G-l~~GD~Il~INg~~v~~~t~~~~~~ll~~~~-~~v~l~v   78 (82)
T d1r6ja_          34 SSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSG-TVVTITI   78 (82)
T ss_dssp             SHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSC-SEEEEEE
T ss_pred             ChHHhcC-cCCCCEEEEeCCeEEeeCCHHHHHHHHHcCC-CEEEEEE
Confidence            7899998 99999999953 5788999999999999764 4577665

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0045  Score=43.09  Aligned_cols=49  Identities=14%  Similarity=0.167  Sum_probs=38.9

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhcccc-ceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASP-YEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~P-Ykv~~~l~re   50 (199)
                      +++++...|++||+|+++- ++.+++.+++|+.+|+-... -.|.+.++|.
T Consensus        40 ~~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~~g~~v~l~v~R~   90 (96)
T d1ujva_          40 LDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRG   90 (96)
T ss_dssp             SCGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECC
T ss_pred             cCcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEEC
Confidence            3566778899999999963 57788899999999996643 4688888774

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0027  Score=46.18  Aligned_cols=47  Identities=21%  Similarity=0.256  Sum_probs=38.6

Q ss_pred             CccccccccCCCCeeeEEEEeeccc-chhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHM-VYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~-~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+.|++||+|++  |...++ .+++|..+|..+.+-.|.+.+.|.
T Consensus        59 g~A~~~g~L~~GD~Il~--INg~~v~~~~~~~~~l~~~~~~~v~l~v~r~  106 (124)
T d1wh1a_          59 SIAAKDGRIREGDRIIQ--INGIEVQNREEAVALLTSEENKNFSLLIARP  106 (124)
T ss_dssp             SHHHHTCCCCTTCEEEE--ESSCBCCSHHHHHHHHTCSSCCSCCEEEEEC
T ss_pred             ChhhhhcccCCCCEEEE--ECCEECCCHHHHHHHHhhCCCCcEEEEEEeC
Confidence            68999999999999999  555444 356789999988898999988763

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0017  Score=45.94  Aligned_cols=44  Identities=20%  Similarity=0.218  Sum_probs=36.3

Q ss_pred             CccccccccCCCCeeeEE-EEeecccchhhHHhhhhccccceEEEEEe
Q psy11904          2 SHCAETWALNNGDRITSV-RISFRHMVYEDALTILSYASPYEVQIETE   48 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~-ti~F~n~~yEDAl~iL~~a~PYkv~~~l~   48 (199)
                      +||++.. |++||+|+++ -.+..+|.++||+.+|+.+ + .+.+.+.
T Consensus        46 g~A~~~g-L~~GD~Il~ING~~v~~~~~~~v~~ll~~~-~-~~~l~V~   90 (101)
T d1ueza_          46 SLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGS-K-KLVLSVY   90 (101)
T ss_dssp             SHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSSS-S-SCCEEEC
T ss_pred             ChHHhcC-CCCCcEEEEECCEECCCCCHHHHHHHHhcC-C-CEEEEEE
Confidence            6788877 9999999997 6788999999999999865 4 4556555

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.004  Score=43.28  Aligned_cols=46  Identities=17%  Similarity=0.177  Sum_probs=36.4

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+ |++||+|+++- +...++.+++|..+|+.+ +=.|.+.+.+
T Consensus        38 ~~A~~aG-l~~GD~Il~VNg~~v~~~t~~e~~~ll~~~-~~~v~L~v~~   84 (91)
T d1g9oa_          38 SPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAA-LNAVRLLVVD   84 (91)
T ss_dssp             SHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTC-SSEEEEEEEC
T ss_pred             CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEC
Confidence            6888888 99999999953 566778999999999764 4567776643

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.82  E-value=0.003  Score=44.47  Aligned_cols=46  Identities=15%  Similarity=0.135  Sum_probs=37.0

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||.  ..|++||+|+++- +...|+.+++|+.+|+.+ +..|.+.++|.
T Consensus        50 s~A~--~~L~~GD~Il~INg~~v~~~~~~ev~~ll~~~-~~~v~l~V~R~   96 (104)
T d2csja1          50 GPAD--GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKS-GKIAAIVVKRP   96 (104)
T ss_dssp             SSHH--HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHS-CSEEEEEEEEE
T ss_pred             Chhh--cCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeC
Confidence            5664  5699999999952 456788999999999975 56899999874

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.80  E-value=0.0043  Score=43.08  Aligned_cols=46  Identities=9%  Similarity=0.065  Sum_probs=36.9

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+ |++||+|+++- .+..|+.+++|+.+|+.+ +-.|.+.+-+
T Consensus        54 ~~A~~aG-L~~GD~Il~INg~~v~~~~h~evv~~ik~~-~~~v~L~V~~  100 (104)
T d1q3oa_          54 GVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQG-GNTLMVKVVM  100 (104)
T ss_dssp             SHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEEEEEEEE
T ss_pred             CHHHHcC-CCCCCEEEEEcCeEcCCCCHHHHHHHHHcC-CCeEEEEEEe
Confidence            6788876 99999999952 466788889999999865 6668887754

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0043  Score=42.08  Aligned_cols=44  Identities=25%  Similarity=0.246  Sum_probs=34.8

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEE
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIET   47 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l   47 (199)
                      |||++ ..|++||+|+++- ...++|.+++|+.+|+.+. =.|.+++
T Consensus        31 s~A~~-~gL~~GD~Il~INg~~v~~~~~~~~~~ll~~~~-~~v~l~v   75 (79)
T d1y7na1          31 GIAER-GGVRVGHRIIEINGQSVVATPHEKIVHILSNAV-GEIHMKT   75 (79)
T ss_dssp             SHHHH-HTCCSSCEEEEETTEECTTSCHHHHHHHHHHCC-EEEEEEE
T ss_pred             CHHHH-CCCCCCCEEEEECCEEeCCCCHHHHHHHHHcCC-CEEEEEE
Confidence            67776 5799999999953 5678899999999999654 3566654

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.59  E-value=0.0057  Score=42.26  Aligned_cols=46  Identities=13%  Similarity=0.097  Sum_probs=37.2

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~r   49 (199)
                      |||++.+ |++||+|+++- ...+++.+++|+.+|+- .+-.|.+.+.|
T Consensus        43 g~A~~~g-L~~GD~Il~VNg~~v~~~t~~~~~~~l~~-~~~~v~L~v~R   89 (91)
T d1m5za_          43 GPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAE-SGNKLDLVISR   89 (91)
T ss_dssp             SHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHT-STTEEEEEEEE
T ss_pred             ChhHhCc-CCCCCEEEEECCEECCCCCHHHHHHHHHC-CCCEEEEEEEE
Confidence            6787887 99999999942 35677899999999984 57789998876

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=95.53  E-value=0.0061  Score=41.96  Aligned_cols=48  Identities=17%  Similarity=0.191  Sum_probs=36.5

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|+++- ....++.-++|..+|+-..=-+|.+.+.|.
T Consensus        30 sPA~~AG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~   78 (92)
T d1fc6a3          30 GPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAP   78 (92)
T ss_dssp             SHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEET
T ss_pred             CChhHHh-hHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEEC
Confidence            8999999 99999999942 234556778888888754435788888874

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0044  Score=44.56  Aligned_cols=45  Identities=20%  Similarity=0.271  Sum_probs=35.8

Q ss_pred             CccccccccCCCCeeeEEE-EeecccchhhHHhhhhccccceEEEEEe
Q psy11904          2 SHCAETWALNNGDRITSVR-ISFRHMVYEDALTILSYASPYEVQIETE   48 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~t-i~F~n~~yEDAl~iL~~a~PYkv~~~l~   48 (199)
                      |||++. .|++||+|+++- +.++++..++|+.+|+-+ +=.|.+.+.
T Consensus        53 s~A~~~-gL~~GD~Il~INg~~v~~~~~~~~~~~l~~~-~~~v~l~v~   98 (117)
T d1uita_          53 SIAHQA-GLEYGDQLLEFNGINLRSATEQQARLIIGQQ-CDTITILAQ   98 (117)
T ss_dssp             SHHHHH-TCCTTCEECEETTEETTTCCHHHHHHHTTSC-CSEEEEEEC
T ss_pred             ChHHhC-CCCCCCEeeeECCcccCCCCHHHHHHHHHCC-CCeEEEEEE
Confidence            577664 699999999963 578889999999999876 444777775

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.12  E-value=0.094  Score=35.15  Aligned_cols=46  Identities=13%  Similarity=0.177  Sum_probs=33.2

Q ss_pred             CccccccccCCCCeeeEEEEeecccch-hhHHhhhhcccc-ceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHMVY-EDALTILSYASP-YEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~~y-EDAl~iL~~a~P-Ykv~~~l~re   50 (199)
                      |||++.+ |++||.|++  |....+.. +|....+....| =.|.+.+.|.
T Consensus        27 spA~~aG-l~~GD~I~~--ing~~i~~~~~~~~~i~~~~~g~~v~l~v~r~   74 (88)
T d2z9ia1          27 GAAANAG-VPKGVVVTK--VDDRPINSADALVAAVRSKAPGATVALTFQDP   74 (88)
T ss_dssp             STTGGGT-CCTTCEEEE--ETTEECCSHHHHHHHHHTSCTTCEEEEEEEET
T ss_pred             CHHHHcC-CCCCCEEEE--eCCCcCCcHHHHHHHHHhCCCCCEEEEEEEEC
Confidence            7899988 999999999  65555543 455566666666 4678888763

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=89.05  E-value=0.19  Score=34.62  Aligned_cols=47  Identities=17%  Similarity=0.005  Sum_probs=35.5

Q ss_pred             CccccccccCCCCeeeEEEEeecccc-hhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHMV-YEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+-+++||+|++  |....+. .++...+|.-..-=.|.+.+.|+
T Consensus        31 sPa~~aGl~k~GD~I~~--IdG~~v~~~~~~~~~l~g~~G~~V~L~i~R~   78 (91)
T d1k32a1          31 SPIFEYGIDPTGYLIED--IDGETVGAGSNIYRVLSEKAGTSARIRLSGK   78 (91)
T ss_dssp             CGGGGGTCCCTTCEEEE--ETTEECBTTBCHHHHHHTTTTSEEEEEEECS
T ss_pred             ChhHhcCCCCCCCEEEE--ECCEeecCcceeEEEEecCCCCEEEEEEEeC
Confidence            89999998899999999  5444332 23557788877777888888764

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=88.14  E-value=0.19  Score=33.68  Aligned_cols=45  Identities=13%  Similarity=0.212  Sum_probs=30.7

Q ss_pred             CccccccccCCCCeeeEEEEeecccc-hhhHHhhhhccccceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHMV-YEDALTILSYASPYEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~PYkv~~~l~re   50 (199)
                      |||++.+ |++||+|++  |.-..+. .+|...+|+.+.. .|.+.+.|.
T Consensus        36 spA~~aG-l~~GDvI~~--ing~~v~~~~~~~~~l~~~~~-~v~l~v~R~   81 (88)
T d1ky9b2          36 TPAAQIG-LKKGDVIIG--ANQQAVKNIAELRKVLDSKPS-VLALNIQRG   81 (88)
T ss_dssp             CTTGGGT-CCSSCEEEE--ETTEECSSHHHHHHHTTTCCS-CCCEEEESS
T ss_pred             CHHHHcC-CCCCcEEEE--ECCEEcCCHHHHHHHHHhCCC-EEEEEEEEC
Confidence            6777765 999999999  4444333 3455777775444 588888774

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.37  E-value=0.27  Score=31.37  Aligned_cols=44  Identities=18%  Similarity=0.268  Sum_probs=32.1

Q ss_pred             cccchhhcccccC-----CCcCCccccccc-CCcccCCCCCCCCCCccee
Q psy11904        109 ESCKICRQKVHQV-----GSHYCQACAYKK-GEHLVLVTADPEKGDKFAL  152 (199)
Q Consensus       109 skCkiCK~kVhQ~-----G~kYCQ~CAYkK-GiCAMCGk~~~~~~~~~~~  152 (199)
                      -.|.||.....++     ||.||..|.-+. ..|.+|...++-..+..+|
T Consensus         7 l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~~~~CP~Cr~~~~~~~~~~aL   56 (56)
T d1bora_           7 LRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWPLGADTPAL   56 (56)
T ss_dssp             SSCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSSCCSSCCCC
T ss_pred             CCCcccCcccCCCEEecCCCHHhHHHHHcCCCcCcCCCCcccCCCCCCCC
Confidence            3677777654432     889999996544 5899999999877766543

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=84.80  E-value=0.26  Score=33.31  Aligned_cols=45  Identities=16%  Similarity=0.192  Sum_probs=29.7

Q ss_pred             CccccccccCCCCeeeEEEEeecccc-hhhHHhhhhcccc-ceEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHMV-YEDALTILSYASP-YEVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~P-Ykv~~~l~r   49 (199)
                      |||++.+ |++||.|++  |.-..+. .+|...+|+...| -.+.+.+.|
T Consensus        38 spA~~aG-l~~gDvI~~--i~g~~v~~~~~l~~~l~~~~~g~~v~l~v~R   84 (94)
T d1ky9a1          38 SSAAKAG-IKAGDVITS--LNGKPISSFAALRAQVGTMPVGSKLTLGLLR   84 (94)
T ss_dssp             SSSTTTT-CCTTCEECB--SSSSBCCSSHHHHHHTTSSBTTCCCEEEEES
T ss_pred             hhHHHhC-CCcccEEEE--ECCEEeCCHHHHHHHHHhCCCCCEEEEEEEE
Confidence            6776666 999999998  4444333 3355778877665 346777665

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=80.64  E-value=0.67  Score=31.96  Aligned_cols=45  Identities=22%  Similarity=0.099  Sum_probs=30.2

Q ss_pred             CccccccccCCCCeeeEEEEeecccc-hhhHHhhhhcccc-ceEEEEEeee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHMV-YEDALTILSYASP-YEVQIETEKE   50 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~~-yEDAl~iL~~a~P-Ykv~~~l~re   50 (199)
                      |||.+ . |++||+|++  |....+. .+|-..+++...| =.|.+.++|.
T Consensus        14 sPA~~-~-L~~GD~I~~--ing~~v~~~~~l~~~i~~~~~G~~v~l~v~R~   60 (103)
T d2hgaa1          14 SPASK-V-LTPGLVIES--INGMPTSNLTTYSAALKTISVGEVINITTDQG   60 (103)
T ss_dssp             SGGGG-T-SCTTCEEEE--ETTEECSSHHHHHHHHTTCCTTCEEEEEETTE
T ss_pred             ChHHh-c-CCCCCEEEE--ECCEEcCCHHHHHHHHhhCCCCCEEEEEEEEC
Confidence            67754 5 999999999  5444333 2333566666666 4488888875

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.40  E-value=0.34  Score=33.06  Aligned_cols=45  Identities=11%  Similarity=0.144  Sum_probs=27.3

Q ss_pred             CccccccccCCCCeeeEEEEeecccch-hhHHhhhhccccc-eEEEEEee
Q psy11904          2 SHCAETWALNNGDRITSVRISFRHMVY-EDALTILSYASPY-EVQIETEK   49 (199)
Q Consensus         2 s~a~~~~~l~~GD~i~s~ti~F~n~~y-EDAl~iL~~a~PY-kv~~~l~r   49 (199)
                      |||++.+ |++||.|++  |....+.. +|...+|....|- .+.+.+.|
T Consensus        37 spA~~aG-l~~GDiI~~--ing~~v~~~~~l~~~l~~~~~g~~v~l~v~R   83 (99)
T d1sota1          37 GPAANAG-IQVNDLIIS--VDNKPAISALETMDQVAEIRPGSVIPVVVMR   83 (99)
T ss_dssp             STTTSSS-CCTTCEECB--SSSSBCCCSHHHHHHHHHSCTTCEEEECC--
T ss_pred             CCHHHcC-CCcceEEEE--ECCEecccHHHHHHHHHcCCCCCEEEEEEEE
Confidence            5666665 999999998  55544442 3445777665553 35555544