Psyllid ID: psy12023

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50-----
Protein Sequence
MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKHY
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccEEEcccHHHHHEEHccccccccccccccHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mfmcdvcgkgykykngiyrhkkfecgqepkyqcpqcpyrakqnAHLTTHMAIKHY
Flexible Loop (DISEMBL)
mfmcdvcgkgykykngiYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKHY
Low Complexity Region (SEG)
MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKHY
Disordered region (IsUnstruct)
*FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAK**************
Disordered Region (DISOPRED)
MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH*
Disordered Region (DISEMBL)
MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKHY
Disordered Region (DISPRO)
MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMA****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKHY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	55	2.2.26 [Sep-21-2011]
Q7KQZ4	787	Longitudinals lacking pro	yes	N/A	0.927	0.064	0.529	1e-12
P42283	891	Longitudinals lacking pro	no	N/A	0.981	0.060	0.436	4e-10
Q9V5M3	878	Longitudinals lacking pro	no	N/A	0.727	0.045	0.525	3e-09
Q867Z4	970	Longitudinals lacking pro	no	N/A	0.963	0.054	0.425	2e-08
Q01714	786	Transcription factor Sp1	yes	N/A	0.872	0.061	0.392	4e-05
O89090	784	Transcription factor Sp1	no	N/A	0.872	0.061	0.392	4e-05
P08048	801	Zinc finger Y-chromosomal	no	N/A	0.927	0.063	0.365	5e-05
Q6B4Z5	801	Zinc finger Y-chromosomal	no	N/A	0.927	0.063	0.365	5e-05
Q9BE73	1081	Zinc finger protein 827 O	N/A	N/A	0.927	0.047	0.403	6e-05
Q17R98	1081	Zinc finger protein 827 O	no	N/A	0.927	0.047	0.403	6e-05

>sp|Q7KQZ4|LOLA3_DROME Longitudinals lacking protein, isoforms A/B/D/L OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 36/51 (70%)

Query: 4   CDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH 54
           C VCG+ YK K+ +  H+K+ECG+EP++QCP C YRAKQ  H+  HM   H
Sbjct: 687 CPVCGRVYKLKSSLRNHQKWECGKEPQFQCPFCVYRAKQKMHIGRHMERMH 737

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.
Drosophila melanogaster (taxid: 7227)

>sp|P42283|LOLA1_DROME Longitudinals lacking protein, isoform G OS=Drosophila melanogaster GN=lola PE=1 SV=2

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 1   MFMCDVCGKGYKYKNGIYRHKKFECG-QEPKYQCPQCPYRAKQNAHLTTHMAIKH 54
           ++ C  CGK Y++K+ + RH+  ECG +EP +QCP CPY++KQ  +L  H+   H
Sbjct: 790 VYECRHCGKKYRWKSTLRRHENVECGGKEPSHQCPYCPYKSKQRGNLGVHVRKHH 844

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q9V5M3|LOLA6_DROME Longitudinals lacking protein, isoforms N/O/W/X/Y OS=Drosophila melanogaster GN=lola PE=1 SV=3

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/40 (52%), Positives = 28/40 (70%)

Query: 2   FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAK 41
           + C+VCGK YK K  + RHK +ECG EP  +CP CP++ K
Sbjct: 709 YACNVCGKTYKIKGSLKRHKNYECGVEPNLKCPHCPHKCK 748

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q867Z4|LOLA4_DROME Longitudinals lacking protein, isoforms F/I/K/T OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 2   FMCDVCGKGYKYKNGIYRHKKFECG-QEPKYQCPQCPYRAKQNAHLTTHMAIKH 54
           ++C  CGK Y++K+ + RH+  ECG +EP + CP C Y+AKQ  +L  H+   H
Sbjct: 903 YVCRHCGKKYRWKSTLRRHENVECGGKEPCHPCPYCSYKAKQRGNLGVHVRKHH 956

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q01714|SP1_RAT Transcription factor Sp1 OS=Rattus norvegicus GN=Sp1 PE=1 SV=2

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 2   FMCD--VCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHM 50
           FMC+   CGK +   + + RHK+   G E K+ CP+CP R  ++ HL+ H+
Sbjct: 657 FMCNWSYCGKRFTRSDELQRHKRTHTG-EKKFACPECPKRFMRSDHLSKHI 706

Transcription factor that can activate or repress transcription in response to physiological and pathological stimuli. Binds with high affinity to GC-rich motifs and regulates the expression of a large number of genes involved in a variety of processes such as cell growth, apoptosis, differentiation and immune responses. Highly regulated by post-translational modifications (phosphorylations, sumoylation, proteolytic cleavage, glycosylation and acetylation). Binds also the PDGFR-alpha G-box promoter. May have a role in modulating the cellular response to DNA damage. Implicated in chromatin remodeling. Plays an essential role in the regulation of FE65 gene expression (By similarity). Plays a role in the recruitment of SMARCA4/BRG1 on the c-FOS promoter.

Rattus norvegicus (taxid: 10116)

>sp|O89090|SP1_MOUSE Transcription factor Sp1 OS=Mus musculus GN=Sp1 PE=1 SV=2

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 2   FMCD--VCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHM 50
           FMC+   CGK +   + + RHK+   G E K+ CP+CP R  ++ HL+ H+
Sbjct: 657 FMCNWSYCGKRFTRSDELQRHKRTHTG-EKKFACPECPKRFMRSDHLSKHI 706

Transcription factor that can activate or repress transcription in response to physiological and pathological stimuli. Binds with high affinity to GC-rich motifs and regulates the expression of a large number of genes involved in a variety of processes such as cell growth, apoptosis, differentiation and immune responses. Highly regulated by post-translational modifications (phosphorylations, sumoylation, proteolytic cleavage, glycosylation and acetylation). Binds also the PDGFR-alpha G-box promoter. May have a role in modulating the cellular response to DNA damage. Implicated in chromatin remodeling. Plays a role in the recruitment of SMARCA4/BRG1 on the c-FOS promoter Plays an essential role in the regulation of FE65 gene expression.

Mus musculus (taxid: 10090)

>sp|P08048|ZFY_HUMAN Zinc finger Y-chromosomal protein OS=Homo sapiens GN=ZFY PE=1 SV=3

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 3   MCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH 54
           +C  CGKG+++ + + +H +   G++P YQC  C YR+  +++L TH+  KH
Sbjct: 545 ICVECGKGFRHPSELRKHMRIHTGEKP-YQCQYCEYRSADSSNLKTHIKTKH 595

Probable transcriptional activator. Binds to the consensus sequence 5'-AGGCCY-3'.

Homo sapiens (taxid: 9606)

>sp|Q6B4Z5|ZFY_PANTR Zinc finger Y-chromosomal protein OS=Pan troglodytes GN=ZFY PE=2 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 3   MCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH 54
           +C  CGKG+++ + + +H +   G++P YQC  C YR+  +++L TH+  KH
Sbjct: 545 ICVECGKGFRHPSELKKHMRIHTGEKP-YQCQYCEYRSADSSNLKTHIKTKH 595

Probable transcriptional activator. Binds to the consensus sequence 5'-AGGCCY-3'.

Pan troglodytes (taxid: 9598)

>sp|Q9BE73|ZN827_MACFA Zinc finger protein 827 OS=Macaca fascicularis GN=ZNF827 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 1   MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 52
           +F CDVCGK +  +  + RH      +E KY+C  CPY AK  A+L  H+ +
Sbjct: 816 LFPCDVCGKVFGRQQTLSRHLSLHT-EERKYKCHLCPYAAKCRANLNQHLTV 866

May be involved in transcriptional regulation.

Macaca fascicularis (taxid: 9541)

>sp|Q17R98|ZN827_HUMAN Zinc finger protein 827 OS=Homo sapiens GN=ZNF827 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 1   MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 52
           +F CDVCGK +  +  + RH      +E KY+C  CPY AK  A+L  H+ +
Sbjct: 816 LFPCDVCGKVFGRQQTLSRHLSLHT-EERKYKCHLCPYAAKCRANLNQHLTV 866

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	55
24652482	787	longitudinals lacking, isoform C [Drosop	0.927	0.064	0.529	5e-11
29539411	786	Lola protein isoform L [Drosophila melan	0.927	0.064	0.529	5e-11
157121098	731	lola [Aedes aegypti] gi|108874717|gb|EAT	0.963	0.072	0.509	5e-11
158292853	634	AGAP005245-PG [Anopheles gambiae str. PE	0.963	0.083	0.509	7e-11
194884229	346	GG22734 [Drosophila erecta] gi|190659385	0.927	0.147	0.529	1e-10
195483702	341	GE13093 [Drosophila yakuba] gi|194176498	0.927	0.149	0.529	1e-10
195333169	335	GM20512 [Drosophila sechellia] gi|194125	0.927	0.152	0.529	1e-10
195582220	335	GD25971 [Drosophila simulans] gi|1941929	0.927	0.152	0.529	1e-10
45552567	771	longitudinals lacking, isoform W [Drosop	0.963	0.068	0.490	1e-10
255522799	468	longitudinals lacking isoform 3 [Triboli	0.963	0.113	0.490	1e-10

>gi|24652482|ref|NP_724946.1| longitudinals lacking, isoform C [Drosophila melanogaster] gi|78711864|ref|NP_724949.2| longitudinals lacking, isoform B [Drosophila melanogaster] gi|73920870|sp|Q7KQZ4.1|LOLA3_DROME RecName: Full=Longitudinals lacking protein, isoforms A/B/D/L gi|7303724|gb|AAF58773.1| longitudinals lacking, isoform C [Drosophila melanogaster] gi|71911713|gb|AAF58776.3| longitudinals lacking, isoform B [Drosophila melanogaster]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 36/51 (70%)

Query: 4   CDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH 54
           C VCG+ YK K+ +  H+K+ECG+EP++QCP C YRAKQ  H+  HM   H
Sbjct: 687 CPVCGRVYKLKSSLRNHQKWECGKEPQFQCPFCVYRAKQKMHIGRHMERMH 737

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|29539411|dbj|BAC67588.1| Lola protein isoform L [Drosophila melanogaster] gi|29539451|dbj|BAC67608.1| Lola protein isoform L [Drosophila melanogaster] gi|29539491|dbj|BAC67628.1| Lola protein isoform L [Drosophila melanogaster] gi|29539531|dbj|BAC67648.1| Lola protein isoform L [Drosophila melanogaster]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 36/51 (70%)

Query: 4   CDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH 54
           C VCG+ YK K+ +  H+K+ECG+EP++QCP C YRAKQ  H+  HM   H
Sbjct: 686 CPVCGRVYKLKSSLRNHQKWECGKEPQFQCPFCVYRAKQKMHIGRHMERMH 736

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157121098|ref|XP_001659824.1| lola [Aedes aegypti] gi|108874717|gb|EAT38942.1| AAEL009212-PC [Aedes aegypti]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 36/53 (67%)

Query: 2   FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH 54
           F C  CG+ YK K+ +  H+K+ECG+EP++QCP C YRAKQ  H+  HM   H
Sbjct: 650 FACPDCGRVYKLKSSLRNHQKWECGKEPQFQCPYCVYRAKQKMHIGRHMERMH 702

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158292853|ref|XP_314150.4| AGAP005245-PG [Anopheles gambiae str. PEST] gi|157017188|gb|EAA09485.4| AGAP005245-PG [Anopheles gambiae str. PEST]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 36/53 (67%)

Query: 2   FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH 54
           F C  CG+ YK K+ +  H+K+ECG+EP++QCP C YRAKQ  H+  HM   H
Sbjct: 553 FACPDCGRTYKLKSSLRNHQKWECGKEPQFQCPYCVYRAKQKMHIGRHMERMH 605

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194884229|ref|XP_001976198.1| GG22734 [Drosophila erecta] gi|190659385|gb|EDV56598.1| GG22734 [Drosophila erecta]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 36/51 (70%)

Query: 4   CDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH 54
           C VCG+ YK K+ +  H+K+ECG+EP++QCP C YRAKQ  H+  HM   H
Sbjct: 246 CPVCGRIYKLKSSLRNHQKWECGKEPQFQCPFCVYRAKQKMHIGRHMERMH 296

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195483702|ref|XP_002090397.1| GE13093 [Drosophila yakuba] gi|194176498|gb|EDW90109.1| GE13093 [Drosophila yakuba]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 36/51 (70%)

Query: 4   CDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH 54
           C VCG+ YK K+ +  H+K+ECG+EP++QCP C YRAKQ  H+  HM   H
Sbjct: 241 CPVCGRVYKLKSSLRNHQKWECGKEPQFQCPFCVYRAKQKMHIGRHMERMH 291

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195333169|ref|XP_002033264.1| GM20512 [Drosophila sechellia] gi|194125234|gb|EDW47277.1| GM20512 [Drosophila sechellia]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 36/51 (70%)

Query: 4   CDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH 54
           C VCG+ YK K+ +  H+K+ECG+EP++QCP C YRAKQ  H+  HM   H
Sbjct: 235 CPVCGRVYKLKSSLRNHQKWECGKEPQFQCPFCVYRAKQKMHIGRHMERMH 285

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195582220|ref|XP_002080926.1| GD25971 [Drosophila simulans] gi|194192935|gb|EDX06511.1| GD25971 [Drosophila simulans]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 36/51 (70%)

Query: 4   CDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH 54
           C VCG+ YK K+ +  H+K+ECG+EP++QCP C YRAKQ  H+  HM   H
Sbjct: 235 CPVCGRVYKLKSSLRNHQKWECGKEPQFQCPFCVYRAKQKMHIGRHMERMH 285

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45552567|ref|NP_995806.1| longitudinals lacking, isoform W [Drosophila melanogaster] gi|29539421|dbj|BAC67593.1| Lola protein isoform Q [Drosophila melanogaster] gi|29539461|dbj|BAC67613.1| Lola protein isoform Q [Drosophila melanogaster] gi|29539501|dbj|BAC67633.1| Lola protein isoform Q [Drosophila melanogaster] gi|29539541|dbj|BAC67653.1| Lola protein isoform Q [Drosophila melanogaster] gi|45445597|gb|AAS64876.1| longitudinals lacking, isoform W [Drosophila melanogaster]

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 34/53 (64%)

Query: 2   FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH 54
           + C+VCGK YK K  + RHK +ECG EP  +CP CP++ K  + L  HM  KH
Sbjct: 709 YACNVCGKTYKIKGSLKRHKNYECGVEPNLKCPHCPHKCKYRSDLRKHMNQKH 761

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255522799|ref|NP_001157312.1| longitudinals lacking isoform 3 [Tribolium castaneum]

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 37/53 (69%)

Query: 2   FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH 54
           F C VCG+ YK K+ +  H+K+ECG+EP+++CP C Y+AKQ  H+  HM   H
Sbjct: 394 FDCSVCGRIYKLKSSLRNHQKWECGKEPQFKCPYCVYKAKQKMHMARHMERMH 446

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	55
FB|FBgn0005630	970	lola "longitudinals lacking" [	0.963	0.054	0.436	3.2e-08
UNIPROTKB|P80944	148	ZFX "Zinc finger X-chromosomal	0.927	0.344	0.365	6.8e-08
UNIPROTKB|Q29419	148	ZFY "Zinc finger Y-chromosomal	0.927	0.344	0.365	6.8e-08
UNIPROTKB|F1NX71	478	ZNF250 "Uncharacterized protei	0.909	0.104	0.411	1.8e-07
ZFIN|ZDB-GENE-050208-469	183	si:ch211-255f4.5 "si:ch211-255	0.963	0.289	0.362	2.3e-07
UNIPROTKB|K7EP55	215	ZNF253 "Zinc finger protein 25	0.927	0.237	0.403	2.9e-07
UNIPROTKB|F1P5D9	693	ZNF250 "Uncharacterized protei	0.909	0.072	0.411	3.1e-07
UNIPROTKB|F1LYN5	149	F1LYN5 "Uncharacterized protei	0.963	0.355	0.413	3.8e-07
WB|WBGene00009937	318	lsl-1 [Caenorhabditis elegans	0.927	0.160	0.392	4e-07
ZFIN|ZDB-GENE-070424-48	419	zgc:162971 "zgc:162971" [Danio	0.909	0.119	0.431	4e-07

FB|FBgn0005630 lola "longitudinals lacking" [Drosophila melanogaster (taxid:7227)]

 Score = 139 (54.0 bits), Expect = 3.2e-08, P = 3.2e-08
 Identities = 24/55 (43%), Positives = 37/55 (67%)

Query:     2 FMCDVCGKGYKYKNGIYRHKKFECG-QEPKYQCPQCPYRAKQNAHLTTHMAIKHY 55
             ++C  CGK Y++K+ + RH+  ECG +EP + CP C Y+AKQ  +L  H+  KH+
Sbjct:   903 YVCRHCGKKYRWKSTLRRHENVECGGKEPCHPCPYCSYKAKQRGNLGVHVR-KHH 956

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0007411 "axon guidance" evidence=IGI;NAS;IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0007409 "axonogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0016199 "axon midline choice point recognition" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019730 "antimicrobial humoral response" evidence=IMP

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0045467 "R7 cell development" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0007464 "R3/R4 cell fate commitment" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|P80944 ZFX "Zinc finger X-chromosomal protein" [Sus scrofa (taxid:9823)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 19/52 (36%), Positives = 34/52 (65%)

Query:     3 MCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH 54
             +C  CGKG+++ + + +H +   G++P YQC  C YR+  +++L TH+  KH
Sbjct:    77 ICVECGKGFRHPSELKKHMRIHTGEKP-YQCQYCEYRSADSSNLKTHVKTKH 127

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q29419 ZFY "Zinc finger Y-chromosomal protein" [Sus scrofa (taxid:9823)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 19/52 (36%), Positives = 34/52 (65%)

Query:     3 MCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH 54
             +C  CGKG+++ + + +H +   G++P YQC  C YR+  +++L TH+  KH
Sbjct:    77 ICVECGKGFRHPSELKKHMRIHTGEKP-YQCQYCEYRSADSSNLKTHVKTKH 127

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NX71 ZNF250 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 128 (50.1 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query:     2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 52
             F C  CGK +K   G+ RH++   G+ P Y CPQCP   + ++HL  H  I
Sbjct:    35 FKCPQCGKSFKNNFGLIRHQRIHTGERP-YSCPQCPQSFRSSSHLNRHQRI 84

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-050208-469 si:ch211-255f4.5 "si:ch211-255f4.5" [Danio rerio (taxid:7955)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query:     2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI----KHY 55
             F+C +CGK Y Y +G+ +H++   G++P Y+C  C  R  Q+ +L  H       KHY
Sbjct:   113 FLCSLCGKSYNYPHGLRQHQRTHTGEKP-YKCSDCHKRFSQSHYLRRHQVTYTGKKHY 169

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|K7EP55 ZNF253 "Zinc finger protein 253" [Homo sapiens (taxid:9606)]

 Score = 119 (46.9 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query:     1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 52
             +F C +CGK +K  + +  HKK   G++P Y+C +C     Q+A+LTTH  I
Sbjct:   107 LFKCIICGKAFKRSSTLTTHKKIHTGEKP-YRCEECGKAFNQSANLTTHKRI 157

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1P5D9 ZNF250 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 128 (50.1 bits), Expect = 3.1e-07, P = 3.1e-07
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query:     2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 52
             F C  CGK +K   G+ RH++   G+ P Y CPQCP   + ++HL  H  I
Sbjct:    23 FKCPQCGKSFKNNFGLIRHQRIHTGERP-YSCPQCPQSFRSSSHLNRHQRI 72

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1LYN5 F1LYN5 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 24/58 (41%), Positives = 29/58 (50%)

Query:     2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLT----THMAIKHY 55
             + C VCGK YK    +Y HKK    ++P Y+C QC        HLT    TH   KHY
Sbjct:    92 YECIVCGKSYKQSPSLYTHKKVHTSEKP-YECKQCRKSFSLKFHLTRHQRTHSGEKHY 148

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

WB|WBGene00009937 lsl-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 122 (48.0 bits), Expect = 4.0e-07, P = 4.0e-07
 Identities = 22/56 (39%), Positives = 34/56 (60%)

Query:     2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC--PYRAKQNA--HLTTHMAIK 53
             ++CDVCG+G++YK+ ++ H+    G  P Y CP C   +R K N   H+ TH+  K
Sbjct:    65 YICDVCGRGFRYKSNMFEHRTVHTGYTP-YVCPFCGKQFRLKGNMKKHMRTHVTSK 119

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

ZFIN|ZDB-GENE-070424-48 zgc:162971 "zgc:162971" [Danio rerio (taxid:7955)]

 Score = 124 (48.7 bits), Expect = 4.0e-07, P = 4.0e-07
 Identities = 22/51 (43%), Positives = 29/51 (56%)

Query:     2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 52
             F C  CGK YKYKN + RH+KF  G++P + C +C         L +HM I
Sbjct:    83 FTCSECGKSYKYKNSLARHEKFHTGEKP-FACTECGKSFADKHRLDSHMMI 132

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7KQZ4	LOLA3_DROME	No assigned EC number	0.5294	0.9272	0.0648	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	55
KOG2462|consensus	279		99.84
KOG2462|consensus	279		99.66
KOG3623|consensus	1007		99.62
PHA02768	55	hypothetical protein; Provisional	99.55
KOG3623|consensus	1007		99.54
KOG3576|consensus	267		99.49
KOG1074|consensus	958		99.48
KOG1074|consensus	958		99.45
PHA00733	128	hypothetical protein	99.42
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	99.28
PHA00732	79	hypothetical protein	99.13
PHA00616	44	hypothetical protein	99.09
KOG3576|consensus	267		99.02
PHA02768	55	hypothetical protein; Provisional	98.94
KOG3993|consensus	500		98.94
PHA00616	44	hypothetical protein	98.87
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.86
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.84
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.84
KOG3608|consensus	467		98.77
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.76
KOG3608|consensus	467		98.61
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.55
PHA00733	128	hypothetical protein	98.5
smart00355	26	ZnF_C2H2 zinc finger.	98.44
KOG3993|consensus	500		98.44
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	98.41
PRK04860	160	hypothetical protein; Provisional	98.3
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.3
PHA00732	79	hypothetical protein	98.23
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	98.21
PLN03086	567	PRLI-interacting factor K; Provisional	98.18
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.17
PLN03086	567	PRLI-interacting factor K; Provisional	98.13
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.09
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	98.07
smart00355	26	ZnF_C2H2 zinc finger.	98.05
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.96
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.69
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.58
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	97.5
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	97.25
KOG2893|consensus	341		96.36
COG5048	467	FOG: Zn-finger [General function prediction only]	96.29
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	95.76
COG4049	65	Uncharacterized protein containing archaeal-type C	95.71
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	95.56
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	95.53
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	95.12
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	94.87
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	94.81
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	94.78
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	94.68
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	94.58
PRK06266	178	transcription initiation factor E subunit alpha; V	94.51
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	94.19
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	94.17
KOG2186|consensus	276		94.03
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	93.79
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	93.58
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	93.52
COG1592	166	Rubrerythrin [Energy production and conversion]	93.51
KOG1146|consensus	1406		93.46
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	93.31
PHA00626	59	hypothetical protein	93.3
smart00531	147	TFIIE Transcription initiation factor IIE.	93.26
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	92.87
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	92.43
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	92.01
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	91.79
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	91.72
PRK09678	72	DNA-binding transcriptional regulator; Provisional	91.59
COG3357	97	Predicted transcriptional regulator containing an	90.59
COG5048	467	FOG: Zn-finger [General function prediction only]	90.15
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	89.9
PF15269	54	zf-C2H2_7: Zinc-finger	89.65
KOG4173|consensus	253		89.34
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	89.17
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	89.08
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	88.43
PF14353	128	CpXC: CpXC protein	88.29
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	88.28
PF07975	51	C1_4: TFIIH C1-like domain; InterPro: IPR004595 Al	88.14
PTZ00255	90	60S ribosomal protein L37a; Provisional	87.54
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	87.41
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	87.31
PF13878	41	zf-C2H2_3: zinc-finger of acetyl-transferase ESCO	86.93
PF09845	131	DUF2072: Zn-ribbon containing protein (DUF2072); I	86.93
KOG2593|consensus	436		86.44
KOG4167|consensus	907		86.04
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	85.95
PF13451	49	zf-trcl: Probable zinc-binding domain	85.72
KOG2071|consensus	579		85.71
PF08790	28	zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IP	85.44
KOG2231|consensus	669		85.41
KOG2071|consensus	579		85.04
TIGR00280	91	L37a ribosomal protein L37a. This model finds euka	84.99
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	84.41
PF12907	40	zf-met2: Zinc-binding	84.1
KOG0978|consensus	698		84.0
PRK03824	135	hypA hydrogenase nickel incorporation protein; Pro	83.63
smart00154	39	ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C	82.99
KOG2482|consensus	423		82.88
PRK03976	90	rpl37ae 50S ribosomal protein L37Ae; Reviewed	82.48
COG4957	148	Predicted transcriptional regulator [Transcription	82.3
COG1327	156	Predicted transcriptional regulator, consists of a	81.59
PF09963	56	DUF2197: Uncharacterized protein conserved in bact	81.22
COG3364	112	Zn-ribbon containing protein [General function pre	80.9
KOG1146|consensus	1406		80.67
PF01428	43	zf-AN1: AN1-like Zinc finger; InterPro: IPR000058	80.5

>KOG2462|consensus

Probab=99.84  E-value=1e-21  Score=89.18  Aligned_cols=53  Identities=25%  Similarity=0.601  Sum_probs=50.5

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |++|..||+.|.+.+.|+.|+++|+|||| |.|..|+++|..+++|+-|+++|.
T Consensus       187 ~c~C~iCGKaFSRPWLLQGHiRTHTGEKP-F~C~hC~kAFADRSNLRAHmQTHS  239 (279)
T KOG2462|consen  187 PCECGICGKAFSRPWLLQGHIRTHTGEKP-FSCPHCGKAFADRSNLRAHMQTHS  239 (279)
T ss_pred             CcccccccccccchHHhhcccccccCCCC-ccCCcccchhcchHHHHHHHHhhc
Confidence            57899999999999999999999999998 999999999999999999999884

>KOG2462|consensus

Probab=99.66  E-value=5.4e-17  Score=74.13  Aligned_cols=50  Identities=24%  Similarity=0.514  Sum_probs=47.8

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHH
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMA   51 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~   51 (55)
                      ||.|..|++.|..+++|..|+.+|.+.++ |+|..|+|.|...+-|..|..
T Consensus       215 PF~C~hC~kAFADRSNLRAHmQTHS~~K~-~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  215 PFSCPHCGKAFADRSNLRAHMQTHSDVKK-HQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             CccCCcccchhcchHHHHHHHHhhcCCcc-ccCcchhhHHHHHHHHHHhhh
Confidence            79999999999999999999999999998 999999999999999999864

>KOG3623|consensus

Probab=99.62  E-value=9.5e-17  Score=80.82  Aligned_cols=49  Identities=33%  Similarity=0.914  Sum_probs=46.7

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHH
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMA   51 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~   51 (55)
                      |+|.+||+.|..+..|+.|+++|.|++| |+|+.|+|.|+.+.+...|+.
T Consensus       282 FKCtECgKAFKfKHHLKEHlRIHSGEKP-feCpnCkKRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  282 FKCTECGKAFKFKHHLKEHLRIHSGEKP-FECPNCKKRFSHSGSYSSHMS  330 (1007)
T ss_pred             ccccccchhhhhHHHHHhhheeecCCCC-cCCcccccccccCCccccccc
Confidence            7899999999999999999999999998 999999999999999988864

>PHA02768 hypothetical protein; Provisional

Probab=99.55  E-value=2.9e-15  Score=54.59  Aligned_cols=43  Identities=14%  Similarity=0.396  Sum_probs=38.7

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHH
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLT   47 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~   47 (55)
                      |+|+.||+.|...+.|..|+++|+  ++ ++|..|++.|.+.+.|.
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~-~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN--TN-LKLSNCKRISLRTGEYI   48 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC--Cc-ccCCcccceecccceeE
Confidence            789999999999999999999999  45 99999999999877653

>KOG3623|consensus

Probab=99.54  E-value=1.5e-15  Score=76.65  Aligned_cols=50  Identities=30%  Similarity=0.747  Sum_probs=41.5

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHH
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMA   51 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~   51 (55)
                      ||+|..|.+.|..+..|..|.+.|.|++| |+|+.|+|.|+.+.+..+||.
T Consensus       922 PyqC~iCkKAFKHKHHLtEHkRLHSGEKP-fQCdKClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  922 PYQCIICKKAFKHKHHLTEHKRLHSGEKP-FQCDKCLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             CcccchhhHhhhhhhhhhhhhhhccCCCc-chhhhhhhhcccccchHhhhc
Confidence            67888888888888888888888888887 888888888888888888864

>KOG3576|consensus

Probab=99.49  E-value=5.1e-15  Score=65.91  Aligned_cols=52  Identities=31%  Similarity=0.721  Sum_probs=47.2

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +.|..||+.|...-+|++|+++|+|-+| |+|..|+++|.++-+|..|.+..|
T Consensus       146 ~lct~cgkgfndtfdlkrh~rthtgvrp-ykc~~c~kaftqrcsleshl~kvh  197 (267)
T KOG3576|consen  146 HLCTFCGKGFNDTFDLKRHTRTHTGVRP-YKCSLCEKAFTQRCSLESHLKKVH  197 (267)
T ss_pred             HHHhhccCcccchhhhhhhhccccCccc-cchhhhhHHHHhhccHHHHHHHHc
Confidence            4588899999999999999999999777 999999999999999999987554

>KOG1074|consensus

Probab=99.48  E-value=4.1e-15  Score=75.63  Aligned_cols=52  Identities=23%  Similarity=0.546  Sum_probs=48.0

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      .+|..|.+.|...+.|+.|.+.|+|++| |+|.+||..|+.+.+|+.|...|+
T Consensus       354 hkCr~CakvfgS~SaLqiHlRSHTGERP-fqCnvCG~~FSTkGNLKvH~~rH~  405 (958)
T KOG1074|consen  354 HKCRFCAKVFGSDSALQIHLRSHTGERP-FQCNVCGNRFSTKGNLKVHFQRHR  405 (958)
T ss_pred             chhhhhHhhcCchhhhhhhhhccCCCCC-eeecccccccccccceeeeeeecc
Confidence            5799999999999999999999999998 999999999999999999866553

>KOG1074|consensus

Probab=99.45  E-value=3e-14  Score=72.63  Aligned_cols=51  Identities=25%  Similarity=0.601  Sum_probs=49.0

Q ss_pred             CCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          3 MCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      .|.+||+.|...+.|..|+++|+++++ |.|.+|++.|....+|+.||.+|+
T Consensus       881 ~C~vCgk~FsSSsALqiH~rTHtg~KP-F~C~fC~~aFttrgnLKvHMgtH~  931 (958)
T KOG1074|consen  881 VCNVCGKQFSSSAALEIHMRTHTGPKP-FFCHFCEEAFTTRGNLKVHMGTHM  931 (958)
T ss_pred             hhccchhcccchHHHHHhhhcCCCCCC-ccchhhhhhhhhhhhhhhhhcccc
Confidence            589999999999999999999999998 999999999999999999999886

>PHA00733 hypothetical protein

Probab=99.42  E-value=5.5e-13  Score=56.15  Aligned_cols=51  Identities=18%  Similarity=0.490  Sum_probs=45.6

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|.....|..|+..+  +.+ +.|.+|++.|.....|..|+...|
T Consensus        73 Py~C~~Cgk~Fss~s~L~~H~r~h--~~~-~~C~~CgK~F~~~~sL~~H~~~~h  123 (128)
T PHA00733         73 PYVCPLCLMPFSSSVSLKQHIRYT--EHS-KVCPVCGKEFRNTDSTLDHVCKKH  123 (128)
T ss_pred             CccCCCCCCcCCCHHHHHHHHhcC--CcC-ccCCCCCCccCCHHHHHHHHHHhc
Confidence            688999999999999999999875  345 999999999999999999998776

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=99.28  E-value=3.1e-12  Score=40.64  Aligned_cols=26  Identities=31%  Similarity=0.782  Sum_probs=23.2

Q ss_pred             hHHhHHHHHhCCCCCccCCCCCccccc
Q psy12023         16 GIYRHKKFECGQEPKYQCPQCPYRAKQ   42 (55)
Q Consensus        16 ~~~~~~~~~~~~~~~~~c~~c~~~f~~   42 (55)
                      +|..|+++|+++++ |.|+.|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~-~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKP-YKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSS-EEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCC-CCCCCCcCeeCc
Confidence            47899999999998 999999999863

...

>PHA00732 hypothetical protein

Probab=99.13  E-value=5.5e-11  Score=46.53  Aligned_cols=44  Identities=25%  Similarity=0.528  Sum_probs=36.5

Q ss_pred             CCCCccccccccchhhHHhHHHH-HhCCCCCccCCCCCcccccchHHHHHHH
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKF-ECGQEPKYQCPQCPYRAKQNAHLTTHMA   51 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~-~~~~~~~~~c~~c~~~f~~~~~l~~h~~   51 (55)
                      ||.|..|++.|.....|..|+.. |.   + +.|+.|++.|.+   +..|.+
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~-~~C~~CgKsF~~---l~~H~~   45 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---L-TKCPVCNKSYRR---LNQHFY   45 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---C-CccCCCCCEeCC---hhhhhc
Confidence            78999999999999999999884 54   3 689999999973   566654

>PHA00616 hypothetical protein

Probab=99.09  E-value=7e-11  Score=41.44  Aligned_cols=33  Identities=21%  Similarity=0.343  Sum_probs=29.5

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP   34 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~   34 (55)
                      ||+|..||+.|...+.+..|+..+.++++ +.|+
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~-~~~~   33 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNK-LTLE   33 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCc-ccee
Confidence            78999999999999999999999999887 7764

>KOG3576|consensus

Probab=99.02  E-value=3.4e-11  Score=54.03  Aligned_cols=52  Identities=25%  Similarity=0.473  Sum_probs=48.2

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +.|..|++.|....-|.+|+..|..-+. +.|..||+.|...-.|++|+|+|.
T Consensus       118 ftCrvCgK~F~lQRmlnrh~kch~~vkr-~lct~cgkgfndtfdlkrh~rtht  169 (267)
T KOG3576|consen  118 FTCRVCGKKFGLQRMLNRHLKCHSDVKR-HLCTFCGKGFNDTFDLKRHTRTHT  169 (267)
T ss_pred             eeeehhhhhhhHHHHHHHHhhhccHHHH-HHHhhccCcccchhhhhhhhcccc
Confidence            5799999999999999999999998788 999999999999999999999885

>PHA02768 hypothetical protein; Provisional

Probab=98.94  E-value=6e-10  Score=40.79  Aligned_cols=24  Identities=25%  Similarity=0.570  Sum_probs=23.0

Q ss_pred             ccCCCCCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+|+.||+.|.+.++|..|+++|.
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~   29 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN   29 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC
Confidence            899999999999999999999985

>KOG3993|consensus

Probab=98.94  E-value=2.7e-10  Score=55.43  Aligned_cols=53  Identities=19%  Similarity=0.520  Sum_probs=45.1

Q ss_pred             CCCccccccccchhhHHhHHHHHhC--------CCC------------------------CccCCCCCcccccchHHHHH
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECG--------QEP------------------------KYQCPQCPYRAKQNAHLTTH   49 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~--------~~~------------------------~~~c~~c~~~f~~~~~l~~h   49 (55)
                      |.|.+|++.|....+|..|.++|-.        ..+                        .|.|..|++.|.+...|+.|
T Consensus       296 YrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKH  375 (500)
T KOG3993|consen  296 YRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKH  375 (500)
T ss_pred             ecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHh
Confidence            7899999999999999999998731        111                        17899999999999999999


Q ss_pred             HHhhc
Q psy12023         50 MAIKH   54 (55)
Q Consensus        50 ~~~~~   54 (55)
                      +..||
T Consensus       376 qlthq  380 (500)
T KOG3993|consen  376 QLTHQ  380 (500)
T ss_pred             HHhhh
Confidence            88876

>PHA00616 hypothetical protein

Probab=98.87  E-value=8.4e-10  Score=38.74  Aligned_cols=26  Identities=23%  Similarity=0.451  Sum_probs=24.0

Q ss_pred             CccCCCCCcccccchHHHHHHHhhcC
Q psy12023         30 KYQCPQCPYRAKQNAHLTTHMAIKHY   55 (55)
Q Consensus        30 ~~~c~~c~~~f~~~~~l~~h~~~~~~   55 (55)
                      ||+|..||+.|.+.+.+..|++.+|.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg   26 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHK   26 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcC
Confidence            48999999999999999999998874

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.86  E-value=1.5e-09  Score=33.28  Aligned_cols=22  Identities=32%  Similarity=0.703  Sum_probs=17.2

Q ss_pred             ccCCCCCcccccchHHHHHHHh
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAI   52 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~   52 (55)
                      |.|+.|++.|.....|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            5677888888888888888776

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.84  E-value=1.4e-08  Score=37.19  Aligned_cols=50  Identities=28%  Similarity=0.672  Sum_probs=37.8

Q ss_pred             CCCccccccccchhhHHhHHH-HHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKK-FECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~-~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.|+.|++.| +...|..|.. .|..+...+.|++|...+.  .+|..|+..+|
T Consensus         3 f~CP~C~~~~-~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    3 FTCPYCGKGF-SESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             cCCCCCCCcc-CHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            7899999954 5567888866 4555443389999998754  48999998887

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.84  E-value=2.9e-09  Score=32.69  Aligned_cols=24  Identities=33%  Similarity=0.764  Sum_probs=18.5

Q ss_pred             ccCCCCCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.|+.|++.|.....|..|++.+|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            578889999988888988888776

...

>KOG3608|consensus

Probab=98.77  E-value=1.5e-08  Score=48.85  Aligned_cols=51  Identities=18%  Similarity=0.632  Sum_probs=38.3

Q ss_pred             CCCccccccccchhhHHhHHHH-HhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKF-ECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~-~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      |+|..|+......+.|..|++. |..+++ |+|+.|+..+.+.+.|..|..+|
T Consensus       264 ykCplCdmtc~~~ssL~~H~r~rHs~dkp-fKCd~Cd~~c~~esdL~kH~~~H  315 (467)
T KOG3608|consen  264 YKCPLCDMTCSSASSLTTHIRYRHSKDKP-FKCDECDTRCVRESDLAKHVQVH  315 (467)
T ss_pred             ccccccccCCCChHHHHHHHHhhhccCCC-ccccchhhhhccHHHHHHHHHhc
Confidence            5777788888888888888775 444444 88888888888888888887655

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.76  E-value=4.3e-09  Score=33.43  Aligned_cols=25  Identities=16%  Similarity=0.359  Sum_probs=20.9

Q ss_pred             CccCCCCCcccccchHHHHHHHhhc
Q psy12023         30 KYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        30 ~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||+|..|++.|.....|..|++.|+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            4788889999998888888887765

>KOG3608|consensus

Probab=98.61  E-value=2.3e-08  Score=48.29  Aligned_cols=51  Identities=27%  Similarity=0.552  Sum_probs=44.3

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +|.|..|.+.|.....|..|+..|..  - |+|+.|+.+....++|..|++..|
T Consensus       237 ~fqC~~C~KrFaTeklL~~Hv~rHvn--~-ykCplCdmtc~~~ssL~~H~r~rH  287 (467)
T KOG3608|consen  237 SFQCAQCFKRFATEKLLKSHVVRHVN--C-YKCPLCDMTCSSASSLTTHIRYRH  287 (467)
T ss_pred             chHHHHHHHHHhHHHHHHHHHHHhhh--c-ccccccccCCCChHHHHHHHHhhh
Confidence            47888899999999889999888876  3 899999999999999999998776

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.55  E-value=3.7e-08  Score=30.07  Aligned_cols=23  Identities=30%  Similarity=0.826  Sum_probs=20.7

Q ss_pred             CCCccccccccchhhHHhHHHHH
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFE   24 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~   24 (55)
                      |.|..|++.|..+..|..|+..|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            57999999999999999998864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PHA00733 hypothetical protein

Probab=98.50  E-value=5.9e-08  Score=41.11  Aligned_cols=49  Identities=16%  Similarity=0.202  Sum_probs=34.1

Q ss_pred             CCccccccccchhhHHhH--H---HHHhCCCCCccCCCCCcccccchHHHHHHHh
Q psy12023          3 MCDVCGKGYKYKNGIYRH--K---KFECGQEPKYQCPQCPYRAKQNAHLTTHMAI   52 (55)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~--~---~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~   52 (55)
                      .|..|.+.+.....+..+  .   ..+.+.++ |.|..|++.|...+.|..|++.
T Consensus        42 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kP-y~C~~Cgk~Fss~s~L~~H~r~   95 (128)
T PHA00733         42 IRAVVKTLIYNPQLLDESSYLYKLLTSKAVSP-YVCPLCLMPFSSSVSLKQHIRY   95 (128)
T ss_pred             HHHHHhhhccChhhhcchHHHHhhcccCCCCC-ccCCCCCCcCCCHHHHHHHHhc
Confidence            466677666655544444  1   12233455 9999999999999999999874

>smart00355 ZnF_C2H2 zinc finger

Probab=98.44  E-value=2.2e-07  Score=28.68  Aligned_cols=23  Identities=35%  Similarity=0.751  Sum_probs=18.3

Q ss_pred             ccCCCCCcccccchHHHHHHHhh
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      |.|..|++.|.....+..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            46788888888888888888754

>KOG3993|consensus

Probab=98.44  E-value=1.5e-08  Score=49.60  Aligned_cols=51  Identities=22%  Similarity=0.511  Sum_probs=41.4

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      |.|..|...+...-.|..|...-..-.- |+|+.|+|.|+-.++|..|.|.|
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~RIV~vE-YrCPEC~KVFsCPANLASHRRWH  318 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPRIVHVE-YRCPECDKVFSCPANLASHRRWH  318 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCeeEEee-ecCCcccccccCchhhhhhhccc
Confidence            4577788788777778888665554445 99999999999999999999987

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.41  E-value=1.2e-07  Score=34.15  Aligned_cols=31  Identities=29%  Similarity=0.636  Sum_probs=22.1

Q ss_pred             hCCCCCccCCCCCcccccchHHHHHHHhhcC
Q psy12023         25 CGQEPKYQCPQCPYRAKQNAHLTTHMAIKHY   55 (55)
Q Consensus        25 ~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~   55 (55)
                      ....+|-.|++|+..+.+..+|++|+.+.|+
T Consensus        19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H~   49 (54)
T PF09237_consen   19 SQSEQPATCPICGAVIRQSRNLRRHLEIRHF   49 (54)
T ss_dssp             CTTS--EE-TTT--EESSHHHHHHHHHHHTT
T ss_pred             hccCCCCCCCcchhhccchhhHHHHHHHHhc
Confidence            3334448999999999999999999998885

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PRK04860 hypothetical protein; Provisional

Probab=98.30  E-value=5.8e-07  Score=39.43  Aligned_cols=38  Identities=21%  Similarity=0.541  Sum_probs=31.6

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQN   43 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~   43 (55)
                      +|.|. |+.   ....+..|.++++++++ |.|..|+..|...
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~-YrC~~C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAV-YRCRRCGETLVFK  156 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCcc-EECCCCCceeEEe
Confidence            47787 876   56678999999999888 9999999988654

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.30  E-value=1.7e-07  Score=29.65  Aligned_cols=25  Identities=36%  Similarity=0.828  Sum_probs=22.2

Q ss_pred             CCCCccccccccchhhHHhHHHHHh
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFEC   25 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~   25 (55)
                      ||.|..|++.|.....|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            6899999999999999999987654

>PHA00732 hypothetical protein

Probab=98.23  E-value=1.1e-06  Score=34.54  Aligned_cols=23  Identities=22%  Similarity=0.528  Sum_probs=21.2

Q ss_pred             CccCCCCCcccccchHHHHHHHh
Q psy12023         30 KYQCPQCPYRAKQNAHLTTHMAI   52 (55)
Q Consensus        30 ~~~c~~c~~~f~~~~~l~~h~~~   52 (55)
                      ||.|..|++.|.+.+.|..|++.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~   23 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARR   23 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhc
Confidence            48999999999999999999874

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=98.21  E-value=1.2e-06  Score=35.11  Aligned_cols=50  Identities=26%  Similarity=0.613  Sum_probs=20.6

Q ss_pred             CCccccccccchhhHHhHHHHHhC-----------------------CCCCccCCCCCcccccchHHHHHHHhh
Q psy12023          3 MCDVCGKGYKYKNGIYRHKKFECG-----------------------QEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      +|..|+..|.....+..|+....+                       ... +.|..|++.|.....|..|++.+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKES-FRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             ------------------------------------------------SS-EEBSSSS-EESSHHHHHHHHHHT
T ss_pred             CccccccccccccccccccccccccccccccccccccccccccccccCCC-CCCCccCCCCcCHHHHHHHHcCc
Confidence            477788888777777777642211                       123 78999999999999999999854

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.18  E-value=4.2e-06  Score=42.82  Aligned_cols=36  Identities=22%  Similarity=0.479  Sum_probs=18.8

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCccc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRA   40 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f   40 (55)
                      +.|. |++.+ ....|..|+..+.+.++ +.|..|++.+
T Consensus       479 v~Cp-Cg~~~-~R~~L~~H~~thCp~Kp-i~C~fC~~~v  514 (567)
T PLN03086        479 LQCP-CGVVL-EKEQMVQHQASTCPLRL-ITCRFCGDMV  514 (567)
T ss_pred             ccCC-CCCCc-chhHHHhhhhccCCCCc-eeCCCCCCcc
Confidence            3454 55433 33455555555555554 6666666655

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.17  E-value=1.4e-06  Score=26.38  Aligned_cols=23  Identities=30%  Similarity=0.852  Sum_probs=18.8

Q ss_pred             CCCccccccccchhhHHhHHHHH
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFE   24 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~   24 (55)
                      |.|+.|++.|.....+..|+..+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            57999999999999999998865

...

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.13  E-value=5.6e-06  Score=42.36  Aligned_cols=46  Identities=28%  Similarity=0.689  Sum_probs=36.5

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      +.|..|++.|. ...+..|+.++.  ++ +.|+ |++.+ .+..|..|+..+
T Consensus       454 ~~C~~Cgk~f~-~s~LekH~~~~H--kp-v~Cp-Cg~~~-~R~~L~~H~~th  499 (567)
T PLN03086        454 VHCEKCGQAFQ-QGEMEKHMKVFH--EP-LQCP-CGVVL-EKEQMVQHQAST  499 (567)
T ss_pred             ccCCCCCCccc-hHHHHHHHHhcC--CC-ccCC-CCCCc-chhHHHhhhhcc
Confidence            57999999996 577899999874  56 9999 99765 567888897654

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.09  E-value=1.9e-06  Score=26.63  Aligned_cols=22  Identities=18%  Similarity=0.443  Sum_probs=17.2

Q ss_pred             ccCCCCCcccccchHHHHHHHh
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAI   52 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~   52 (55)
                      |.|.+|++.|.....+..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            4678888888888888888764

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=98.07  E-value=2.5e-06  Score=26.22  Aligned_cols=23  Identities=35%  Similarity=1.005  Sum_probs=16.9

Q ss_pred             ccCCCCCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+|+.|+.... ...|..|++.+|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            57888888777 778888888776

>smart00355 ZnF_C2H2 zinc finger

Probab=98.05  E-value=7.2e-06  Score=25.06  Aligned_cols=24  Identities=29%  Similarity=0.663  Sum_probs=21.1

Q ss_pred             CCCccccccccchhhHHhHHHHHh
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFEC   25 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~   25 (55)
                      +.|..|++.|.....+..|+..|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            579999999999999999988654

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.96  E-value=2e-06  Score=41.36  Aligned_cols=50  Identities=34%  Similarity=0.645  Sum_probs=37.9

Q ss_pred             CCCCcc--ccccccchhhHHhHHHH-H-----------------h-CCCCCccCCCCCcccccchHHHHHHH
Q psy12023          1 MFMCDV--CGKGYKYKNGIYRHKKF-E-----------------C-GQEPKYQCPQCPYRAKQNAHLTTHMA   51 (55)
Q Consensus         1 p~~c~~--c~~~~~~~~~~~~~~~~-~-----------------~-~~~~~~~c~~c~~~f~~~~~l~~h~~   51 (55)
                      ||+|.+  |++.+.....|+-|+.- |                 . ..+| |+|.+|+|.++....|+-|..
T Consensus       349 pykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KP-YrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         349 PYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKP-YRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             eecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCc-eeccccchhhccCccceeccc
Confidence            678875  88888888888877651 1                 0 1245 999999999999999987754

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.69  E-value=4e-05  Score=27.77  Aligned_cols=29  Identities=21%  Similarity=0.462  Sum_probs=21.3

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEP   29 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~   29 (55)
                      |..|..|+.......+|.+|+++..+.++
T Consensus        24 PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   24 PATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             -EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             CCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            45799999999999999999998877654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.58  E-value=1.5e-05  Score=25.16  Aligned_cols=21  Identities=24%  Similarity=0.551  Sum_probs=15.2

Q ss_pred             ccCCCCCcccccchHHHHHHH
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMA   51 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~   51 (55)
                      |-|..|++.|.....+..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            567777777777777777655

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=97.50  E-value=0.00014  Score=22.67  Aligned_cols=21  Identities=29%  Similarity=0.574  Sum_probs=14.7

Q ss_pred             ccCCCCCcccccchHHHHHHHh
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAI   52 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~   52 (55)
                      ..|+.|++.| ..+.|..|+.+
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4678888888 55567777653

>smart00451 ZnF_U1 U1-like zinc finger

Probab=97.25  E-value=0.00026  Score=23.34  Aligned_cols=21  Identities=14%  Similarity=0.498  Sum_probs=17.9

Q ss_pred             ccCCCCCcccccchHHHHHHH
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMA   51 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~   51 (55)
                      |.|..|+..|.....+..|+.
T Consensus         4 ~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        4 FYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             eEccccCCccCCHHHHHHHHC
Confidence            789999999998888888865

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2893|consensus

Probab=96.36  E-value=0.00098  Score=31.47  Aligned_cols=41  Identities=20%  Similarity=0.516  Sum_probs=32.7

Q ss_pred             CccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHH
Q psy12023          4 CDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTH   49 (55)
Q Consensus         4 c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h   49 (55)
                      |..|++.|.....|..|+..    +. |+|.+|-+.+..-..|..|
T Consensus        13 cwycnrefddekiliqhqka----kh-fkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQKA----KH-FKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeecccccchhhhhhhhhhh----cc-ceeeeehhhhccCCCceee
Confidence            77899999998888888763    67 9999998877666666666

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=96.29  E-value=0.00065  Score=33.09  Aligned_cols=51  Identities=22%  Similarity=0.546  Sum_probs=42.9

Q ss_pred             CCCccccccccchhhHHhHHH--HHhCC--CCCccCC--CCCcccccchHHHHHHHhh
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKK--FECGQ--EPKYQCP--QCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~--~~~~~--~~~~~c~--~c~~~f~~~~~l~~h~~~~   53 (55)
                      +.|..|...+.....+..+..  .|.++  ++ +.|.  .|++.|.+...+..|..++
T Consensus       290 ~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~  346 (467)
T COG5048         290 IKSKQCNISFSRSSPLTRHLRSVNHSGESLKP-FSCPYSLCGKLFSRNDALKRHILLH  346 (467)
T ss_pred             CCCccccCCccccccccccccccccccccCCc-eeeeccCCCccccccccccCCcccc
Confidence            467788888999999999999  89998  66 9998  7999999998888776654

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=95.76  E-value=0.0074  Score=19.86  Aligned_cols=25  Identities=36%  Similarity=0.978  Sum_probs=16.9

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYR   39 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~   39 (55)
                      |.|..||.......            .+ +.|++|+..
T Consensus         2 ~~C~~CGy~y~~~~------------~~-~~CP~Cg~~   26 (33)
T cd00350           2 YVCPVCGYIYDGEE------------AP-WVCPVCGAP   26 (33)
T ss_pred             EECCCCCCEECCCc------------CC-CcCcCCCCc
Confidence            67888887654321            34 899999863

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=95.71  E-value=0.0052  Score=22.76  Aligned_cols=26  Identities=23%  Similarity=0.571  Sum_probs=18.0

Q ss_pred             CCCCCccCCCCCcccccchHHHHHHHh
Q psy12023         26 GQEPKYQCPQCPYRAKQNAHLTTHMAI   52 (55)
Q Consensus        26 ~~~~~~~c~~c~~~f~~~~~l~~h~~~   52 (55)
                      |+.- +.|+-|+..|..+-+..+|...
T Consensus        14 GE~~-lrCPRC~~~FR~~K~Y~RHVNK   39 (65)
T COG4049          14 GEEF-LRCPRCGMVFRRRKDYIRHVNK   39 (65)
T ss_pred             Ccee-eeCCchhHHHHHhHHHHHHhhH
Confidence            4444 6788888888877777777553

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=95.56  E-value=0.01  Score=19.73  Aligned_cols=24  Identities=38%  Similarity=0.905  Sum_probs=16.1

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPY   38 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~   38 (55)
                      |.|..||....             ++.+|..|++|+.
T Consensus         3 ~~C~~CG~i~~-------------g~~~p~~CP~Cg~   26 (34)
T cd00729           3 WVCPVCGYIHE-------------GEEAPEKCPICGA   26 (34)
T ss_pred             EECCCCCCEeE-------------CCcCCCcCcCCCC
Confidence            57888886643             2234478999986

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=95.53  E-value=0.011  Score=19.99  Aligned_cols=33  Identities=18%  Similarity=0.590  Sum_probs=22.1

Q ss_pred             CCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccc
Q psy12023          3 MCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAK   41 (55)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~   41 (55)
                      .|+.|+..|....+.     +..+... .+|..|+..|.
T Consensus         4 ~CP~C~~~f~v~~~~-----l~~~~~~-vrC~~C~~~f~   36 (37)
T PF13719_consen    4 TCPNCQTRFRVPDDK-----LPAGGRK-VRCPKCGHVFR   36 (37)
T ss_pred             ECCCCCceEEcCHHH-----cccCCcE-EECCCCCcEee
Confidence            588888888765432     1233345 89999998774

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=95.12  E-value=0.015  Score=19.59  Aligned_cols=33  Identities=15%  Similarity=0.346  Sum_probs=21.6

Q ss_pred             CCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccc
Q psy12023          3 MCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAK   41 (55)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~   41 (55)
                      .|+.|+..|......     +-..... .+|..|+..|.
T Consensus         4 ~Cp~C~~~y~i~d~~-----ip~~g~~-v~C~~C~~~f~   36 (36)
T PF13717_consen    4 TCPNCQAKYEIDDEK-----IPPKGRK-VRCSKCGHVFF   36 (36)
T ss_pred             ECCCCCCEEeCCHHH-----CCCCCcE-EECCCCCCEeC
Confidence            578888888765543     1122344 78999998763

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=94.87  E-value=0.0047  Score=27.35  Aligned_cols=40  Identities=15%  Similarity=0.228  Sum_probs=21.2

Q ss_pred             CCCccccccccc-hhhHHhHHHHHhCCCCCccCCCCCcccccc
Q psy12023          2 FMCDVCGKGYKY-KNGIYRHKKFECGQEPKYQCPQCPYRAKQN   43 (55)
Q Consensus         2 ~~c~~c~~~~~~-~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~   43 (55)
                      .+|+.||..... .++...-.... -.+. ++|+.||.+|...
T Consensus         1 m~cp~c~~~~~~~~~s~~~~~~~~-~~~~-~~c~~c~~~f~~~   41 (154)
T PRK00464          1 MRCPFCGHPDTRVIDSRPAEDGNA-IRRR-RECLACGKRFTTF   41 (154)
T ss_pred             CcCCCCCCCCCEeEeccccCCCCc-eeee-eeccccCCcceEe
Confidence            368899976521 11110000000 1134 8899999999654

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=94.81  E-value=0.021  Score=26.67  Aligned_cols=26  Identities=27%  Similarity=0.565  Sum_probs=20.0

Q ss_pred             CCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         28 EPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        28 ~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      .+ |.|.+|+|.|.-......|+...|
T Consensus        76 ~K-~~C~lc~KlFkg~eFV~KHI~nKH  101 (214)
T PF04959_consen   76 DK-WRCPLCGKLFKGPEFVRKHIFNKH  101 (214)
T ss_dssp             EE-EEE-SSS-EESSHHHHHHHHHHH-
T ss_pred             CE-ECCCCCCcccCChHHHHHHHhhcC
Confidence            45 999999999999999999987665

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=94.78  E-value=0.02  Score=19.23  Aligned_cols=34  Identities=12%  Similarity=0.340  Sum_probs=22.0

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAK   41 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~   41 (55)
                      ..|..|+..|....+...     ..... ..|+.|+..|.
T Consensus         3 ~~CP~C~~~~~v~~~~~~-----~~~~~-v~C~~C~~~~~   36 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQLG-----ANGGK-VRCGKCGHVWY   36 (38)
T ss_pred             EECCCCCCEEEeCHHHcC-----CCCCE-EECCCCCCEEE
Confidence            358889988876553311     12234 78999998774

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.68  E-value=0.052  Score=18.79  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=15.9

Q ss_pred             ccCCCCCccccc----chHHHHHHHhh
Q psy12023         31 YQCPQCPYRAKQ----NAHLTTHMAIK   53 (55)
Q Consensus        31 ~~c~~c~~~f~~----~~~l~~h~~~~   53 (55)
                      .+|..|++.+..    .+.|..|++..
T Consensus        17 a~C~~C~~~~~~~~~~ts~l~~HL~~~   43 (45)
T PF02892_consen   17 AKCKYCGKVIKYSSGGTSNLKRHLKKK   43 (45)
T ss_dssp             EEETTTTEE-----SSTHHHHHHHHHT
T ss_pred             EEeCCCCeEEeeCCCcHHHHHHhhhhh
Confidence            789999987766    47888998543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=94.58  E-value=0.028  Score=24.95  Aligned_cols=30  Identities=17%  Similarity=0.579  Sum_probs=20.8

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAK   41 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~   41 (55)
                      |.|+.|+..|.....+.         .. |.|+.||..+.
T Consensus       110 Y~Cp~c~~r~tf~eA~~---------~~-F~Cp~Cg~~L~  139 (158)
T TIGR00373       110 FICPNMCVRFTFNEAME---------LN-FTCPRCGAMLD  139 (158)
T ss_pred             EECCCCCcEeeHHHHHH---------cC-CcCCCCCCEee
Confidence            46888887777665542         24 89999987654

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=94.51  E-value=0.028  Score=25.48  Aligned_cols=30  Identities=23%  Similarity=0.780  Sum_probs=21.1

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAK   41 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~   41 (55)
                      |.|+.|+..|.....+         +.. |.|+.||..+-
T Consensus       118 Y~Cp~C~~rytf~eA~---------~~~-F~Cp~Cg~~L~  147 (178)
T PRK06266        118 FFCPNCHIRFTFDEAM---------EYG-FRCPQCGEMLE  147 (178)
T ss_pred             EECCCCCcEEeHHHHh---------hcC-CcCCCCCCCCe
Confidence            5688888887765543         124 99999997654

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=94.19  E-value=0.06  Score=22.32  Aligned_cols=25  Identities=28%  Similarity=0.756  Sum_probs=22.6

Q ss_pred             ccC----CCCCcccccchHHHHHHHhhcC
Q psy12023         31 YQC----PQCPYRAKQNAHLTTHMAIKHY   55 (55)
Q Consensus        31 ~~c----~~c~~~f~~~~~l~~h~~~~~~   55 (55)
                      |.|    ..|+........+..|.+.+|.
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            889    8999999999999999998874

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=94.17  E-value=0.044  Score=20.62  Aligned_cols=8  Identities=50%  Similarity=1.867  Sum_probs=5.4

Q ss_pred             ccCCCCCc
Q psy12023         31 YQCPQCPY   38 (55)
Q Consensus        31 ~~c~~c~~   38 (55)
                      |.|+.||.
T Consensus        51 Y~Cp~CGF   58 (61)
T COG2888          51 YRCPKCGF   58 (61)
T ss_pred             eECCCcCc
Confidence            77777763

>KOG2186|consensus

Probab=94.03  E-value=0.039  Score=26.49  Aligned_cols=45  Identities=22%  Similarity=0.499  Sum_probs=33.0

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHH
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHM   50 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~   50 (55)
                      |.|+.||....-. .+..|+....+ .- |.|.-|++.|.+ .+...|.
T Consensus         4 FtCnvCgEsvKKp-~vekH~srCrn-~~-fSCIDC~k~F~~-~sYknH~   48 (276)
T KOG2186|consen    4 FTCNVCGESVKKP-QVEKHMSRCRN-AY-FSCIDCGKTFER-VSYKNHT   48 (276)
T ss_pred             Eehhhhhhhcccc-chHHHHHhccC-Ce-eEEeeccccccc-chhhhhh
Confidence            5799999876644 45668887777 45 899999999987 4455564

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=93.79  E-value=0.05  Score=19.19  Aligned_cols=26  Identities=31%  Similarity=0.993  Sum_probs=17.9

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYR   39 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~   39 (55)
                      |.|..||..+...           ...+ .+|+.||..
T Consensus         3 Y~C~~Cg~~~~~~-----------~~~~-irC~~CG~r   28 (44)
T smart00659        3 YICGECGRENEIK-----------SKDV-VRCRECGYR   28 (44)
T ss_pred             EECCCCCCEeecC-----------CCCc-eECCCCCce
Confidence            6788899876532           1234 899999864

present in RNA polymerase I, II and III

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=93.58  E-value=0.031  Score=19.65  Aligned_cols=29  Identities=28%  Similarity=0.707  Sum_probs=19.2

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAK   41 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~   41 (55)
                      |.|..||..+......          .. ..|+.||..+-
T Consensus         4 y~C~~CG~~~~~~~~~----------~~-~~Cp~CG~~~~   32 (46)
T PRK00398          4 YKCARCGREVELDEYG----------TG-VRCPYCGYRIL   32 (46)
T ss_pred             EECCCCCCEEEECCCC----------Cc-eECCCCCCeEE
Confidence            6788898877553211          14 78999987543

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=93.52  E-value=0.068  Score=22.46  Aligned_cols=29  Identities=21%  Similarity=0.561  Sum_probs=19.4

Q ss_pred             CCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccc
Q psy12023          3 MCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQN   43 (55)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~   43 (55)
                      .|..||+.|=..           + +.|..|+.||..|.-.
T Consensus        11 ~Cp~CG~kFYDL-----------n-k~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   11 TCPSCGAKFYDL-----------N-KDPIVCPKCGTEFPPE   39 (108)
T ss_pred             cCCCCcchhccC-----------C-CCCccCCCCCCccCcc
Confidence            577888777331           2 3448899999877654

The function of members of this family is unknown.

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=93.51  E-value=0.059  Score=24.30  Aligned_cols=10  Identities=30%  Similarity=0.680  Sum_probs=6.6

Q ss_pred             CCccCCCCCc
Q psy12023         29 PKYQCPQCPY   38 (55)
Q Consensus        29 ~~~~c~~c~~   38 (55)
                      +|-.|++||.
T Consensus       148 ~P~~CPiCga  157 (166)
T COG1592         148 APEVCPICGA  157 (166)
T ss_pred             CCCcCCCCCC
Confidence            3477888774

>KOG1146|consensus

Probab=93.46  E-value=0.069  Score=31.01  Aligned_cols=49  Identities=27%  Similarity=0.614  Sum_probs=39.6

Q ss_pred             CCCccccccccchhhHHhHHHHHh-------------------------CCCCCccCCCCCcccccchHHHHHHH
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFEC-------------------------GQEPKYQCPQCPYRAKQNAHLTTHMA   51 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~c~~c~~~f~~~~~l~~h~~   51 (55)
                      +.|..|+..+.....|-.|++.-.                         +.++ |.|..|...++...+|.+|+.
T Consensus       466 ~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p-~~C~~C~~stttng~Lsihlq  539 (1406)
T KOG1146|consen  466 LKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKP-YPCRACNYSTTTNGNLSIHLQ  539 (1406)
T ss_pred             ccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCc-ccceeeeeeeecchHHHHHHH
Confidence            578999999999999999988610                         1134 889999999999999999965

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=93.31  E-value=0.026  Score=20.25  Aligned_cols=29  Identities=21%  Similarity=0.661  Sum_probs=18.6

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPY   38 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~   38 (55)
                      |.|..||..|......      .. +.. ..|+.||.
T Consensus         6 y~C~~Cg~~fe~~~~~------~~-~~~-~~CP~Cg~   34 (52)
T TIGR02605         6 YRCTACGHRFEVLQKM------SD-DPL-ATCPECGG   34 (52)
T ss_pred             EEeCCCCCEeEEEEec------CC-CCC-CCCCCCCC
Confidence            6799999888654321      11 233 57999986

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>PHA00626 hypothetical protein

Probab=93.30  E-value=0.029  Score=20.84  Aligned_cols=14  Identities=36%  Similarity=0.940  Sum_probs=11.6

Q ss_pred             ccCCCCCcccccch
Q psy12023         31 YQCPQCPYRAKQNA   44 (55)
Q Consensus        31 ~~c~~c~~~f~~~~   44 (55)
                      |+|..|+..|+..+
T Consensus        24 YkCkdCGY~ft~~~   37 (59)
T PHA00626         24 YVCCDCGYNDSKDA   37 (59)
T ss_pred             eEcCCCCCeechhh
Confidence            99999999887553

>smart00531 TFIIE Transcription initiation factor IIE

Probab=93.26  E-value=0.061  Score=23.59  Aligned_cols=35  Identities=17%  Similarity=0.579  Sum_probs=21.6

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAK   41 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~   41 (55)
                      |.|+.|+..|.....+...   .. ... |.|+.||....
T Consensus       100 Y~Cp~C~~~y~~~ea~~~~---d~-~~~-f~Cp~Cg~~l~  134 (147)
T smart00531      100 YKCPNCQSKYTFLEANQLL---DM-DGT-FTCPRCGEELE  134 (147)
T ss_pred             EECcCCCCEeeHHHHHHhc---CC-CCc-EECCCCCCEEE
Confidence            5688898888754432211   11 234 89999987653

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=92.87  E-value=0.079  Score=17.44  Aligned_cols=27  Identities=37%  Similarity=1.069  Sum_probs=15.7

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCccc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRA   40 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f   40 (55)
                      |.|..|+..+....          + .+ .+|..||...
T Consensus         1 Y~C~~Cg~~~~~~~----------~-~~-irC~~CG~RI   27 (32)
T PF03604_consen    1 YICGECGAEVELKP----------G-DP-IRCPECGHRI   27 (32)
T ss_dssp             EBESSSSSSE-BST----------S-ST-SSBSSSS-SE
T ss_pred             CCCCcCCCeeEcCC----------C-Cc-EECCcCCCeE
Confidence            46778887664221          2 33 7899998643

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=92.43  E-value=0.17  Score=15.71  Aligned_cols=20  Identities=25%  Similarity=0.624  Sum_probs=12.6

Q ss_pred             ccCCCCCcccccchHHHHHHH
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMA   51 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~   51 (55)
                      ..|++|++.+ ....+..|.-
T Consensus         2 v~CPiC~~~v-~~~~in~HLD   21 (26)
T smart00734        2 VQCPVCFREV-PENLINSHLD   21 (26)
T ss_pred             CcCCCCcCcc-cHHHHHHHHH
Confidence            3577888777 4455666643

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

>smart00614 ZnF_BED BED zinc finger

Probab=92.01  E-value=0.23  Score=17.74  Aligned_cols=21  Identities=19%  Similarity=0.547  Sum_probs=17.0

Q ss_pred             ccCCCCCcccccc-----hHHHHHHH
Q psy12023         31 YQCPQCPYRAKQN-----AHLTTHMA   51 (55)
Q Consensus        31 ~~c~~c~~~f~~~-----~~l~~h~~   51 (55)
                      ..|..|++.+...     ++|.+|+.
T Consensus        19 a~C~~C~~~l~~~~~~gTs~L~rHl~   44 (50)
T smart00614       19 AKCKYCGKKLSRSSKGGTSNLRRHLR   44 (50)
T ss_pred             EEecCCCCEeeeCCCCCcHHHHHHHH
Confidence            6789999887654     68999987

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=91.79  E-value=0.16  Score=19.12  Aligned_cols=7  Identities=57%  Similarity=1.820  Sum_probs=3.8

Q ss_pred             ccCCCCC
Q psy12023         31 YQCPQCP   37 (55)
Q Consensus        31 ~~c~~c~   37 (55)
                      |.|+.||
T Consensus        49 Y~CP~CG   55 (59)
T PRK14890         49 YTCPKCG   55 (59)
T ss_pred             eECCCCC
Confidence            5555554

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=91.72  E-value=0.12  Score=22.57  Aligned_cols=21  Identities=29%  Similarity=0.600  Sum_probs=14.0

Q ss_pred             ccCCCCCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ..|-+||+.|..   |.+|.+.||
T Consensus        73 i~clecGk~~k~---LkrHL~~~~   93 (132)
T PF05443_consen   73 IICLECGKKFKT---LKRHLRTHH   93 (132)
T ss_dssp             EE-TBT--EESB---HHHHHHHTT
T ss_pred             eEEccCCcccch---HHHHHHHcc
Confidence            678899998865   488988886

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>PRK09678 DNA-binding transcriptional regulator; Provisional

Probab=91.59  E-value=0.1  Score=20.38  Aligned_cols=39  Identities=18%  Similarity=0.398  Sum_probs=22.2

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCC--CCCcccccc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP--QCPYRAKQN   43 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~--~c~~~f~~~   43 (55)
                      +.|..||........-....  ...+.- ++|.  .||.+|...
T Consensus         2 m~CP~Cg~~a~irtSr~~s~--~~~~~Y-~qC~N~eCg~tF~t~   42 (72)
T PRK09678          2 FHCPLCQHAAHARTSRYITD--TTKERY-HQCQNVNCSATFITY   42 (72)
T ss_pred             ccCCCCCCccEEEEChhcCh--hhheee-eecCCCCCCCEEEEE
Confidence            46888887664333222221  133344 7787  799988653

>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]

Probab=90.59  E-value=0.16  Score=20.77  Aligned_cols=11  Identities=18%  Similarity=0.833  Sum_probs=5.2

Q ss_pred             ccCCCCCcccc
Q psy12023         31 YQCPQCPYRAK   41 (55)
Q Consensus        31 ~~c~~c~~~f~   41 (55)
                      -.|..||..|.
T Consensus        59 a~CkkCGfef~   69 (97)
T COG3357          59 ARCKKCGFEFR   69 (97)
T ss_pred             hhhcccCcccc
Confidence            44555554443

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=90.15  E-value=0.28  Score=24.23  Aligned_cols=52  Identities=23%  Similarity=0.499  Sum_probs=39.1

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCC--CCcccccchHHHHHHHhhc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ--CPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~   54 (55)
                      +.|..|...+........+...+.++++ ..|..  |...+.....+..+...++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (467)
T COG5048          34 DSCPNCTDSFSRLEHLTRHIRSHTGEKP-SQCSYSGCDKSFSRPLELSRHLRTHH   87 (467)
T ss_pred             hhcccccccccccchhhhhcccccccCC-ccccccccccccCCcchhhhhccccc
Confidence            3567788888888888999999999887 78754  5667777777777666554

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=89.90  E-value=0.17  Score=15.59  Aligned_cols=8  Identities=38%  Similarity=1.651  Sum_probs=6.7

Q ss_pred             ccCCCCCc
Q psy12023         31 YQCPQCPY   38 (55)
Q Consensus        31 ~~c~~c~~   38 (55)
                      |.|+.||+
T Consensus        17 f~CPnCG~   24 (24)
T PF07754_consen   17 FPCPNCGF   24 (24)
T ss_pred             EeCCCCCC
Confidence            89999884

It is likely to bind zinc via its four well-conserved cysteine residues.

>PF15269 zf-C2H2_7: Zinc-finger

Probab=89.65  E-value=0.31  Score=17.35  Aligned_cols=22  Identities=41%  Similarity=1.000  Sum_probs=17.6

Q ss_pred             ccCCCCCcccccchHHHHHHHh
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAI   52 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~   52 (55)
                      |+|-+|..+....+.|-.|++.
T Consensus        21 ykcfqcpftc~~kshl~nhmky   42 (54)
T PF15269_consen   21 YKCFQCPFTCNEKSHLFNHMKY   42 (54)
T ss_pred             ceeecCCcccchHHHHHHHHHH
Confidence            6677888888888888888763

>KOG4173|consensus

Probab=89.34  E-value=0.16  Score=23.88  Aligned_cols=51  Identities=24%  Similarity=0.443  Sum_probs=35.8

Q ss_pred             CCccccccccchhhHHhHHHH-H---------hCCCCCccC--CCCCcccccchHHHHHHHhhc
Q psy12023          3 MCDVCGKGYKYKNGIYRHKKF-E---------CGQEPKYQC--PQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~~~~-~---------~~~~~~~~c--~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      .|.+|.+.|.....|..|+.- |         .| ..-|+|  ..|+..|...-....|+-..|
T Consensus       108 sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG-~dMy~ClvEgCt~KFkT~r~RkdH~I~~H  170 (253)
T KOG4173|consen  108 SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERG-QDMYQCLVEGCTEKFKTSRDRKDHMIRMH  170 (253)
T ss_pred             hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcC-ccHHHHHHHhhhhhhhhhhhhhhHHHHhc
Confidence            588899999988888777652 2         22 333777  458888888877778865443

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=89.17  E-value=0.27  Score=19.98  Aligned_cols=11  Identities=18%  Similarity=0.769  Sum_probs=7.9

Q ss_pred             ccCCCCCcccc
Q psy12023         31 YQCPQCPYRAK   41 (55)
Q Consensus        31 ~~c~~c~~~f~   41 (55)
                      +.|..|+..|.
T Consensus        54 W~C~kCg~~fA   64 (89)
T COG1997          54 WKCRKCGAKFA   64 (89)
T ss_pred             EEcCCCCCeec
Confidence            67777777664

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=89.08  E-value=0.47  Score=20.66  Aligned_cols=29  Identities=10%  Similarity=0.122  Sum_probs=19.1

Q ss_pred             CCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccc
Q psy12023          3 MCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQN   43 (55)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~   43 (55)
                      .|..||+.|=..           + +.|..|+.||..+.-.
T Consensus        11 ~Cp~cg~kFYDL-----------n-k~p~vcP~cg~~~~~~   39 (129)
T TIGR02300        11 ICPNTGSKFYDL-----------N-RRPAVSPYTGEQFPPE   39 (129)
T ss_pred             cCCCcCcccccc-----------C-CCCccCCCcCCccCcc
Confidence            577788776331           2 3448899999877544

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=88.43  E-value=0.22  Score=17.23  Aligned_cols=12  Identities=25%  Similarity=0.764  Sum_probs=8.9

Q ss_pred             ccCCCCCccccc
Q psy12023         31 YQCPQCPYRAKQ   42 (55)
Q Consensus        31 ~~c~~c~~~f~~   42 (55)
                      |+|..||..|..
T Consensus         6 y~C~~Cg~~fe~   17 (42)
T PF09723_consen    6 YRCEECGHEFEV   17 (42)
T ss_pred             EEeCCCCCEEEE
Confidence            778888877754

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF14353 CpXC: CpXC protein

Probab=88.29  E-value=0.019  Score=24.42  Aligned_cols=42  Identities=19%  Similarity=0.480  Sum_probs=23.5

Q ss_pred             CCccccccccchhhHH--------hHHHHHhCCCCCccCCCCCcccccch
Q psy12023          3 MCDVCGKGYKYKNGIY--------RHKKFECGQEPKYQCPQCPYRAKQNA   44 (55)
Q Consensus         3 ~c~~c~~~~~~~~~~~--------~~~~~~~~~~~~~~c~~c~~~f~~~~   44 (55)
                      .|..|+..|.......        ....+-.|+--.+.|+.||..|.-..
T Consensus         3 tCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~   52 (128)
T PF14353_consen    3 TCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEY   52 (128)
T ss_pred             CCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCC
Confidence            5778887765332111        12223344433388999999876443

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=88.28  E-value=0.24  Score=17.97  Aligned_cols=27  Identities=26%  Similarity=0.741  Sum_probs=16.3

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYR   39 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~   39 (55)
                      |.|..||+.+...          ..... ..|+-||..
T Consensus         7 Y~C~~Cg~~~~~~----------~~~~~-irCp~Cg~r   33 (49)
T COG1996           7 YKCARCGREVELD----------QETRG-IRCPYCGSR   33 (49)
T ss_pred             EEhhhcCCeeehh----------hccCc-eeCCCCCcE
Confidence            5688888877211          11233 788888853

>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair

Probab=88.14  E-value=0.064  Score=19.59  Aligned_cols=23  Identities=22%  Similarity=0.625  Sum_probs=13.4

Q ss_pred             ccCCCCCcccccchHHHHHHHhh
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      |+|+.|...|...-.+-.|+.+|
T Consensus        22 y~C~~C~~~FC~dCD~fiHE~LH   44 (51)
T PF07975_consen   22 YRCPKCKNHFCIDCDVFIHETLH   44 (51)
T ss_dssp             E--TTTT--B-HHHHHTTTTTS-
T ss_pred             EECCCCCCccccCcChhhhcccc
Confidence            99999999998777776676655

It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.

>PTZ00255 60S ribosomal protein L37a; Provisional

Probab=87.54  E-value=0.24  Score=20.27  Aligned_cols=11  Identities=18%  Similarity=0.721  Sum_probs=6.7

Q ss_pred             ccCCCCCcccc
Q psy12023         31 YQCPQCPYRAK   41 (55)
Q Consensus        31 ~~c~~c~~~f~   41 (55)
                      +.|..|++.|.
T Consensus        55 W~C~~C~~~~A   65 (90)
T PTZ00255         55 WRCKGCKKTVA   65 (90)
T ss_pred             EEcCCCCCEEe
Confidence            56666666553

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=87.41  E-value=0.3  Score=16.39  Aligned_cols=11  Identities=27%  Similarity=0.836  Sum_probs=8.4

Q ss_pred             ccCCCCCcccc
Q psy12023         31 YQCPQCPYRAK   41 (55)
Q Consensus        31 ~~c~~c~~~f~   41 (55)
                      |+|..||..|.
T Consensus         6 y~C~~Cg~~fe   16 (41)
T smart00834        6 YRCEDCGHTFE   16 (41)
T ss_pred             EEcCCCCCEEE
Confidence            67888888764

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>TIGR00622 ssl1 transcription factor ssl1

Probab=87.31  E-value=0.62  Score=19.85  Aligned_cols=23  Identities=17%  Similarity=0.417  Sum_probs=19.6

Q ss_pred             ccCCCCCcccccchHHHHHHHhh
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      |+|+.|...|...-+.-.|..+|
T Consensus        82 y~C~~C~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        82 YVCAVCKNVFCVDCDVFVHESLH  104 (112)
T ss_pred             eeCCCCCCccccccchhhhhhcc
Confidence            88999999999888888887765

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO

Probab=86.93  E-value=0.89  Score=15.68  Aligned_cols=23  Identities=17%  Similarity=0.320  Sum_probs=14.8

Q ss_pred             ccCCCCCccccc--chHHHHHHHhh
Q psy12023         31 YQCPQCPYRAKQ--NAHLTTHMAIK   53 (55)
Q Consensus        31 ~~c~~c~~~f~~--~~~l~~h~~~~   53 (55)
                      ..|..||..+..  ...-..|.+.|
T Consensus        14 ~~C~~CgM~Y~~~~~eD~~~H~~yH   38 (41)
T PF13878_consen   14 TTCPTCGMLYSPGSPEDEKLHKKYH   38 (41)
T ss_pred             cCCCCCCCEECCCCHHHHHHHHHHH
Confidence            578999987754  34445565544

>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function

Probab=86.93  E-value=0.36  Score=21.08  Aligned_cols=15  Identities=20%  Similarity=0.603  Sum_probs=12.9

Q ss_pred             CCCCccccccccchh
Q psy12023          1 MFMCDVCGKGYKYKN   15 (55)
Q Consensus         1 p~~c~~c~~~~~~~~   15 (55)
                      |++|..||+.|...+
T Consensus         1 PH~Ct~Cg~~f~dgs   15 (131)
T PF09845_consen    1 PHQCTKCGRVFEDGS   15 (131)
T ss_pred             CcccCcCCCCcCCCc
Confidence            789999999998765

>KOG2593|consensus

Probab=86.44  E-value=0.58  Score=24.37  Aligned_cols=33  Identities=18%  Similarity=0.607  Sum_probs=16.6

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPY   38 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~   38 (55)
                      |.|+.|.+.|.....+   +......-. |.|..|+-
T Consensus       129 Y~Cp~C~kkyt~Lea~---~L~~~~~~~-F~C~~C~g  161 (436)
T KOG2593|consen  129 YVCPNCQKKYTSLEAL---QLLDNETGE-FHCENCGG  161 (436)
T ss_pred             ccCCccccchhhhHHH---HhhcccCce-EEEecCCC
Confidence            5677777666544332   222222223 66766653

>KOG4167|consensus

Probab=86.04  E-value=0.097  Score=28.83  Aligned_cols=23  Identities=17%  Similarity=0.353  Sum_probs=19.1

Q ss_pred             ccCCCCCcccccchHHHHHHHhh
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      |.|.+|++.|-.--++.-||+.|
T Consensus       793 FpCreC~kvF~KiKSrNAHMK~H  815 (907)
T KOG4167|consen  793 FPCRECGKVFFKIKSRNAHMKTH  815 (907)
T ss_pred             eehHHHHHHHHHHhhhhHHHHHH
Confidence            88999999998777777787765

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=85.95  E-value=0.45  Score=22.30  Aligned_cols=16  Identities=25%  Similarity=0.563  Sum_probs=12.5

Q ss_pred             CCCccCCCCCcccccch
Q psy12023         28 EPKYQCPQCPYRAKQNA   44 (55)
Q Consensus        28 ~~~~~c~~c~~~f~~~~   44 (55)
                      +. +.|++|++.|....
T Consensus         4 k~-~~CPvC~~~F~~~~   19 (214)
T PF09986_consen    4 KK-ITCPVCGKEFKTKK   19 (214)
T ss_pred             Cc-eECCCCCCeeeeeE
Confidence            45 78999999887653

>PF13451 zf-trcl: Probable zinc-binding domain

Probab=85.72  E-value=0.3  Score=17.70  Aligned_cols=15  Identities=27%  Similarity=0.939  Sum_probs=10.5

Q ss_pred             CCCccccccccchhh
Q psy12023          2 FMCDVCGKGYKYKNG   16 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~   16 (55)
                      +.|..||..|.....
T Consensus         5 l~C~dCg~~FvfTa~   19 (49)
T PF13451_consen    5 LTCKDCGAEFVFTAG   19 (49)
T ss_pred             EEcccCCCeEEEehh
Confidence            468888888776544

>KOG2071|consensus

Probab=85.71  E-value=0.75  Score=24.87  Aligned_cols=23  Identities=30%  Similarity=0.600  Sum_probs=19.9

Q ss_pred             ccCCCCCcccccchHHHHHHHhh
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      -+|..||.+|.+......|+-+|
T Consensus       419 nqC~~CG~R~~~~ee~sk~md~H  441 (579)
T KOG2071|consen  419 NQCKSCGLRFDDSEERSKHMDIH  441 (579)
T ss_pred             chhcccccccccchhhhhHhhhh
Confidence            78999999999988888887665

>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.44  E-value=0.15  Score=16.32  Aligned_cols=9  Identities=33%  Similarity=0.877  Sum_probs=5.7

Q ss_pred             CCccccccc
Q psy12023          3 MCDVCGKGY   11 (55)
Q Consensus         3 ~c~~c~~~~   11 (55)
                      .|-.|++.|
T Consensus         2 sCiDC~~~F   10 (28)
T PF08790_consen    2 SCIDCSKDF   10 (28)
T ss_dssp             EETTTTEEE
T ss_pred             eeecCCCCc
Confidence            456666666

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.

>KOG2231|consensus

Probab=85.41  E-value=1.2  Score=24.66  Aligned_cols=48  Identities=23%  Similarity=0.579  Sum_probs=27.3

Q ss_pred             CCccccccccchhhHHhHHHHHhCCCCCccCCCC------CcccccchHHHHHHHhhcC
Q psy12023          3 MCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC------PYRAKQNAHLTTHMAIKHY   55 (55)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c------~~~f~~~~~l~~h~~~~~~   55 (55)
                      .|..|...|.....+..|+..+    . |.|..|      ..-|.....|..|-+..||
T Consensus       184 ~C~~C~~~fld~~el~rH~~~~----h-~~chfC~~~~~~neyy~~~~dLe~HfR~~Hf  237 (669)
T KOG2231|consen  184 LCKFCHERFLDDDELYRHLRFD----H-EFCHFCDYKTGQNEYYNDYDDLEEHFRKGHF  237 (669)
T ss_pred             cchhhhhhhccHHHHHHhhccc----e-eheeecCcccccchhcccchHHHHHhhhcCc
Confidence            3566666666666666665522    2 344444      2345566667777666665

>KOG2071|consensus

Probab=85.04  E-value=0.77  Score=24.84  Aligned_cols=25  Identities=16%  Similarity=0.357  Sum_probs=20.7

Q ss_pred             CCCccccccccchhhHHhHHHHHhC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECG   26 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~   26 (55)
                      -+|..||..|........++.+|..
T Consensus       419 nqC~~CG~R~~~~ee~sk~md~H~d  443 (579)
T KOG2071|consen  419 NQCKSCGLRFDDSEERSKHMDIHDD  443 (579)
T ss_pred             chhcccccccccchhhhhHhhhhhh
Confidence            4799999999999888888877653

>TIGR00280 L37a ribosomal protein L37a

Probab=84.99  E-value=0.29  Score=20.04  Aligned_cols=10  Identities=20%  Similarity=0.810  Sum_probs=6.0

Q ss_pred             ccCCCCCccc
Q psy12023         31 YQCPQCPYRA   40 (55)
Q Consensus        31 ~~c~~c~~~f   40 (55)
                      +.|..|++.|
T Consensus        54 W~C~~C~~~~   63 (91)
T TIGR00280        54 WTCRKCGAKF   63 (91)
T ss_pred             EEcCCCCCEE
Confidence            5666666655

This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=84.41  E-value=0.71  Score=14.38  Aligned_cols=11  Identities=36%  Similarity=0.966  Sum_probs=8.1

Q ss_pred             ccCCCCCcccc
Q psy12023         31 YQCPQCPYRAK   41 (55)
Q Consensus        31 ~~c~~c~~~f~   41 (55)
                      -.|+.||..|.
T Consensus        15 ~~Cp~CG~~F~   25 (26)
T PF10571_consen   15 KFCPHCGYDFE   25 (26)
T ss_pred             CcCCCCCCCCc
Confidence            36888888774

Several members are annotated as putative helicases.

>PF12907 zf-met2: Zinc-binding

Probab=84.10  E-value=0.2  Score=17.35  Aligned_cols=21  Identities=24%  Similarity=0.411  Sum_probs=11.1

Q ss_pred             ccCCCCCccccc---chHHHHHHH
Q psy12023         31 YQCPQCPYRAKQ---NAHLTTHMA   51 (55)
Q Consensus        31 ~~c~~c~~~f~~---~~~l~~h~~   51 (55)
                      +.|.+|..+|..   ...|..|-.
T Consensus         2 i~C~iC~qtF~~t~~~~~L~eH~e   25 (40)
T PF12907_consen    2 IICKICRQTFMQTTNEPQLKEHAE   25 (40)
T ss_pred             cCcHHhhHHHHhcCCHHHHHHHHH
Confidence            456666655432   344666643

>KOG0978|consensus

Probab=84.00  E-value=0.56  Score=25.91  Aligned_cols=19  Identities=26%  Similarity=0.515  Sum_probs=14.8

Q ss_pred             ccCCCCCcccccchHHHHH
Q psy12023         31 YQCPQCPYRAKQNAHLTTH   49 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h   49 (55)
                      -+|+.|+.+|.....+..|
T Consensus       679 RKCP~Cn~aFganDv~~I~  697 (698)
T KOG0978|consen  679 RKCPKCNAAFGANDVHRIH  697 (698)
T ss_pred             CCCCCCCCCCCcccccccC
Confidence            5899999999887665543

>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional

Probab=83.63  E-value=0.36  Score=21.02  Aligned_cols=13  Identities=31%  Similarity=0.899  Sum_probs=9.3

Q ss_pred             CCCccccccccch
Q psy12023          2 FMCDVCGKGYKYK   14 (55)
Q Consensus         2 ~~c~~c~~~~~~~   14 (55)
                      +.|..||..|...
T Consensus        71 ~~C~~CG~~~~~~   83 (135)
T PRK03824         71 LKCRNCGNEWSLK   83 (135)
T ss_pred             EECCCCCCEEecc
Confidence            4688898777653

>smart00154 ZnF_AN1 AN1-like Zinc finger

Probab=82.99  E-value=0.78  Score=15.66  Aligned_cols=13  Identities=15%  Similarity=0.501  Sum_probs=10.7

Q ss_pred             ccCCCCCcccccc
Q psy12023         31 YQCPQCPYRAKQN   43 (55)
Q Consensus        31 ~~c~~c~~~f~~~   43 (55)
                      +.|..|+..|...
T Consensus        13 f~C~~C~~~FC~~   25 (39)
T smart00154       13 FKCRHCGNLFCGE   25 (39)
T ss_pred             eECCccCCccccc
Confidence            8999999988654

Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.

>KOG2482|consensus

Probab=82.88  E-value=0.91  Score=23.19  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=20.6

Q ss_pred             ccCCCCCcccccchHHHHHHHhh
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      ++|--|.+.|+.+..|+.|||..
T Consensus       196 ~~CLyCekifrdkntLkeHMrkK  218 (423)
T KOG2482|consen  196 LRCLYCEKIFRDKNTLKEHMRKK  218 (423)
T ss_pred             heeeeeccccCCcHHHHHHHHhc
Confidence            78888999999999999999843

>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed

Probab=82.48  E-value=0.42  Score=19.58  Aligned_cols=10  Identities=20%  Similarity=0.866  Sum_probs=5.5

Q ss_pred             ccCCCCCccc
Q psy12023         31 YQCPQCPYRA   40 (55)
Q Consensus        31 ~~c~~c~~~f   40 (55)
                      +.|..|++.|
T Consensus        55 W~C~~C~~~~   64 (90)
T PRK03976         55 WECRKCGAKF   64 (90)
T ss_pred             EEcCCCCCEE
Confidence            5555555544

>COG4957 Predicted transcriptional regulator [Transcription]

Probab=82.30  E-value=1.1  Score=19.78  Aligned_cols=21  Identities=19%  Similarity=0.254  Sum_probs=15.3

Q ss_pred             ccCCCCCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ..|-++|+.|.   +|++|+.+|+
T Consensus        77 IicLEDGkkfK---SLKRHL~t~~   97 (148)
T COG4957          77 IICLEDGKKFK---SLKRHLTTHY   97 (148)
T ss_pred             EEEeccCcchH---HHHHHHhccc
Confidence            45777788774   5888988875

>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]

Probab=81.59  E-value=0.4  Score=21.49  Aligned_cols=13  Identities=23%  Similarity=0.447  Sum_probs=10.0

Q ss_pred             ccCCCCCcccccc
Q psy12023         31 YQCPQCPYRAKQN   43 (55)
Q Consensus        31 ~~c~~c~~~f~~~   43 (55)
                      -+|..|+..|.+.
T Consensus        29 ReC~~C~~RFTTf   41 (156)
T COG1327          29 RECLECGERFTTF   41 (156)
T ss_pred             hcccccccccchh
Confidence            5788999888653

>PF09963 DUF2197: Uncharacterized protein conserved in bacteria (DUF2197); InterPro: IPR019241 This family represents various hypothetical bacterial proteins with no known function

Probab=81.22  E-value=0.63  Score=17.39  Aligned_cols=40  Identities=20%  Similarity=0.454  Sum_probs=20.8

Q ss_pred             CCccccccccchhhHHhHHHHHhCCCCCccCCCCCccccc
Q psy12023          3 MCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQ   42 (55)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~   42 (55)
                      .|..|++...-........+.-......|.|+.|......
T Consensus         4 kC~lCdk~~~Id~~~~~aKrLrnrPi~tYmC~eC~~RI~~   43 (56)
T PF09963_consen    4 KCILCDKKEEIDEDTPEAKRLRNRPIHTYMCDECKERIRE   43 (56)
T ss_pred             EEEecCCEEEeccCCHHHHHhhcCCCcceeChhHHHHHhH
Confidence            3666776655433322222222233445889988765443

>COG3364 Zn-ribbon containing protein [General function prediction only]

Probab=80.90  E-value=1.2  Score=18.77  Aligned_cols=15  Identities=20%  Similarity=0.547  Sum_probs=12.2

Q ss_pred             CCCCccccccccchh
Q psy12023          1 MFMCDVCGKGYKYKN   15 (55)
Q Consensus         1 p~~c~~c~~~~~~~~   15 (55)
                      |+.|..||..|..-+
T Consensus         2 pH~CtrCG~vf~~g~   16 (112)
T COG3364           2 PHQCTRCGEVFDDGS   16 (112)
T ss_pred             Cceeccccccccccc
Confidence            678999999998754

>KOG1146|consensus

Probab=80.67  E-value=0.29  Score=28.77  Aligned_cols=27  Identities=33%  Similarity=0.675  Sum_probs=23.2

Q ss_pred             CCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         27 QEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        27 ~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      .+. +.|+.|+..++....|-.|+|..|
T Consensus       463 ~kt-~~cpkc~~~yk~a~~L~vhmRskh  489 (1406)
T KOG1146|consen  463 FKT-LKCPKCNWHYKLAQTLGVHMRSKH  489 (1406)
T ss_pred             ccc-ccCCccchhhhhHHHhhhcccccc
Confidence            345 899999999999999999999744

>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.50  E-value=0.56  Score=16.23  Aligned_cols=13  Identities=15%  Similarity=0.524  Sum_probs=8.2

Q ss_pred             ccCCCCCcccccc
Q psy12023         31 YQCPQCPYRAKQN   43 (55)
Q Consensus        31 ~~c~~c~~~f~~~   43 (55)
                      +.|..|++.|...
T Consensus        14 ~~C~~C~~~FC~~   26 (43)
T PF01428_consen   14 FKCKHCGKSFCLK   26 (43)
T ss_dssp             EE-TTTS-EE-TT
T ss_pred             eECCCCCcccCcc
Confidence            8999999988654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	55
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-07
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	4e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-04
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-04
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	3e-04

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 41.3 bits (98), Expect = 3e-07
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 2  FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 52
            C  C      K  +  H++  C   P ++C  C +  KQ ++L+ HM  
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKK 59

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 35.8 bits (83), Expect = 4e-05
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 2  FMCDVCGKGYKYKNGIYRHKK---FECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH 54
            C++CG   + K  +  H++           + C  C  R ++   +  H +  H
Sbjct: 8  LQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSH 62

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 34.5 bits (80), Expect = 1e-04
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 2  FMCDVCGKGYKYKNGIYRHKKFECGQEPK-YQCPQCPYRAKQNAHLTTHMAIKH 54
          + C VC + Y + +   RH      +  K Y CP C     +  ++T H+ I H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 34.4 bits (80), Expect = 1e-04
 Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 2  FMCDVCGKGYKYKNGIYRHKKFECGQEPK-YQCPQCPYRAKQNAHLTTHMAIKH 54
          + C +C   +     +  H   +  +    + CP C     + + L  H+  +H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 33.5 bits (76), Expect = 3e-04
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 2  FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 52
          ++C+ CG   K  + + +H +      P Y C  C +  K   +LT HM  
Sbjct: 2  YICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKS 51

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	55
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.93
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.86
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.84
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.83
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.83
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.81
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.81
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.8
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.8
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.8
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.79
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.79
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.79
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.79
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.78
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.78
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.77
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.76
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.76
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.75
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.74
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.74
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.74
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.73
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.73
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.72
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.71
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.71
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.7
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.7
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.7
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.7
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.69
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.69
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.69
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.69
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.69
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.69
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.68
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.66
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.66
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.66
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.65
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.64
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.64
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.63
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.62
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.62
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.62
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.61
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.6
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.6
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.59
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.57
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.57
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.57
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.55
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.54
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.53
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.52
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.52
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.51
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.5
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.49
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.48
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.48
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.48
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.48
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.48
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.47
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.47
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.47
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.47
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.46
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.46
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.46
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.46
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.46
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.46
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.46
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.45
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.45
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.45
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.45
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.45
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.45
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.45
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.45
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.45
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.45
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.45
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.45
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.45
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.44
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.44
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.44
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.44
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.44
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.44
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.43
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.43
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.43
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.43
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.43
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.43
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.43
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.43
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.43
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.42
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.41
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.4
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.4
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.4
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.4
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.39
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.39
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.39
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.39
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.38
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.37
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.37
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.36
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.35
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.35
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.35
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.35
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.34
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.34
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.33
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.33
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.32
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.32
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.31
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.31
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.31
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	99.3
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.3
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.3
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.3
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.3
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.3
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.3
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.3
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.3
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.29
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.29
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.29
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.29
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.29
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.29
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.29
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.29
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.28
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.28
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.28
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.28
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.28
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.28
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.28
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.28
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.28
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.27
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.27
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.27
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.27
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.27
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.27
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.27
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.27
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.27
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.27
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.26
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.26
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.26
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.26
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	99.26
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.26
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.26
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.25
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.25
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.25
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.24
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.24
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.23
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.23
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.23
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.23
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.22
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.21
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.21
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.2
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.19
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.19
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.19
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.19
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.19
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.19
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.18
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.18
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.18
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	99.18
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.17
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.17
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.17
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.16
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	99.16
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.15
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.15
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	99.15
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	99.14
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.13
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.12
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	99.12
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.1
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.1
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	99.08
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.08
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	99.07
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	99.07
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.07
1ard_A	29	Yeast transcription factor ADR1; transcription reg	99.06
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	99.06
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	99.06
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.06
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	99.06
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	99.06
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	99.05
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	99.05
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.04
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.04
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	99.03
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.03
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	99.03
1ard_A	29	Yeast transcription factor ADR1; transcription reg	99.03
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.03
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	99.02
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.02
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	98.59
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	99.02
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	99.01
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	99.01
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.0
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	99.0
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.99
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.99
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	98.98
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.97
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.96
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.96
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.95
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.95
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.95
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	98.48
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.93
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.93
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.47
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.93
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.93
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.93
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.93
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.46
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.92
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	98.9
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.9
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.89
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.89
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.89
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.89
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	98.89
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.88
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.87
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	98.37
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.86
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.84
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	98.84
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	98.83
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.81
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.81
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.8
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.8
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.8
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	98.8
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.8
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	98.24
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	98.76
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.72
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.72
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.7
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.66
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.66
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.63
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.56
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.56
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.33
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	98.28
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.18
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.17
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	97.95
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	97.67
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.58
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	97.35
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.07
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	97.01
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	95.84
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	95.67
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	95.41
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	94.95
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	94.61
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	94.57
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	94.22
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	93.98
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	93.53
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	93.28
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	93.12
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	93.01
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	92.42
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	92.41
3jyw_9	72	60S ribosomal protein L43; eukaryotic ribosome, RA	92.28
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	91.61
1lko_A	191	Rubrerythrin all-iron(II) form; reduced form, DIIR	91.45
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	90.58
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	90.53
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	90.43
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	89.42
3iyl_X	1214	VP3; non-enveloped virus, membrane penetration pro	89.27
2ct5_A	73	Zinc finger BED domain containing protein 1; DREF	89.24
3izc_m	92	60S ribosomal protein RPL43 (L37AE); eukaryotic ri	88.81
3iz5_m	92	60S ribosomal protein L43 (L37AE); eukaryotic ribo	88.71
2kdx_A	119	HYPA, hydrogenase/urease nickel incorporation prot	88.46
1ej6_B	1275	Lambda1; icosahedral, non-equivalence, dsRNA virus	88.35
3j21_i	83	50S ribosomal protein L37AE; archaea, archaeal, KI	88.0
1z60_A	59	TFIIH basal transcription factor complex P44 subun	86.98
1vfy_A	73	Phosphatidylinositol-3-phosphate binding FYVE doma	85.26
2lcq_A	165	Putative toxin VAPC6; PIN domain, Zn ribbon domain	84.93
3cc2_Z	116	50S ribosomal protein L37AE, 50S ribosomal protein	84.93
2czr_A	226	TBP-interacting protein; tata-binding protein (TBP	84.1
1wys_A	75	Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc	83.59
1y02_A	120	CARP2, FYVE-ring finger protein sakura; zinc-bindi	83.27
4a17_Y	103	RPL37A, 60S ribosomal protein L32; eukaryotic ribo	82.86
2yw8_A	82	RUN and FYVE domain-containing protein 1; structur	82.61
1joc_A	125	EEA1, early endosomal autoantigen 1; FYVE domain,	82.56
1z2q_A	84	LM5-1; membrane protein, FYVE domain, zinc-finger;	82.38
3a43_A	139	HYPD, hydrogenase nickel incorporation protein HYP	82.04
1x4v_A	63	Hypothetical protein LOC130617; ZF-AN1 domain, zin	81.34
3ax1_A	358	Serrate RNA effector molecule; miRNA processing, p	80.65
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	80.04

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.93  E-value=6.5e-26  Score=84.28  Aligned_cols=53  Identities=28%  Similarity=0.787  Sum_probs=51.3

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|...+.|..|+++|+++++ |.|.+|++.|.+.+.|..|+++|.
T Consensus         4 py~C~~C~k~F~~~~~L~~H~~~Ht~ekp-~~C~~C~k~F~~~~~L~~H~~~Ht   56 (60)
T 4gzn_C            4 PFFCNFCGKTYRDASGLSRHRRAHLGYRP-RSCPECGKCFRDQSEVNRHLKVHQ   56 (60)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHHTCCC-EECTTTCCEESSHHHHHHHGGGGS
T ss_pred             CccCCCCCCEeCCHHHHHHHHHHhCCCcC-eECCCCCCCcCCHHHHHHHhCccC
Confidence            79999999999999999999999999998 999999999999999999999985

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.86  E-value=1.6e-21  Score=71.40  Aligned_cols=53  Identities=30%  Similarity=0.622  Sum_probs=50.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|.+|++.|.....|..|+++||
T Consensus         4 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            4 SRECSYCGKFFRSNYYLNIHLRTHTGEKP-YKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             -CBCTTTCCBCSCHHHHHHHHHHHHCCCC-EECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CccCCCCcchhCChHHHHHHHHHcCCCCC-cCCCCCcchhCCHHHHHHHHHHhc
Confidence            68999999999999999999999999888 999999999999999999999987

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.84  E-value=4.4e-21  Score=70.21  Aligned_cols=53  Identities=28%  Similarity=0.634  Sum_probs=50.7

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|+.|++.|...+.|..|+++|+
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~   53 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKSKA   53 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCC-EECSSSSCEESSHHHHHHHHHSSS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCC-ccCCCCCchhcCHHHHHHHHHHhc
Confidence            78999999999999999999999999888 999999999999999999999886

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.83  E-value=2.1e-20  Score=71.43  Aligned_cols=53  Identities=32%  Similarity=0.743  Sum_probs=50.5

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +|.|..|++.|.....|..|+.+|.++++ |.|.+|++.|.....|..|+++|+
T Consensus        17 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~   69 (74)
T 2lce_A           17 PYKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRIHS   69 (74)
T ss_dssp             SBCCTTSSCCBSCHHHHHHHHHHHCCCCS-EECTTTCCEESCHHHHHHHHHHHC
T ss_pred             CeECCCCCceeCCHHHHHHHHHHcCCCCC-EECCCCCchhCCHHHHHHHHHhcC
Confidence            58999999999999999999999999888 999999999999999999999886

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.83  E-value=5.8e-21  Score=74.93  Aligned_cols=53  Identities=26%  Similarity=0.563  Sum_probs=48.6

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +|.|+.|++.|.....|..|+++|+++++ |.|..|++.|.+...|..|++..|
T Consensus        28 ~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~~H   80 (85)
T 2lv2_A           28 CHLCPVCGESFASKGAQERHLRLLHAAQV-FPCKYCPATFYSSPGLTRHINKCH   80 (85)
T ss_dssp             TEECTTSCCEESSHHHHHHHHHTTSCSSS-EECTTSSCEESSHHHHHHHHHTTC
T ss_pred             CEECCCCCCCcCcHHHHhhhhhhccCCCc-cCCCCCCCEeCCHHHHHHhCcccC
Confidence            46799999999999999999999999888 999999999999999999976433

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.81  E-value=1.7e-20  Score=71.11  Aligned_cols=53  Identities=26%  Similarity=0.624  Sum_probs=50.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|.+|++.|.....|..|+++|+
T Consensus         9 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C~~~f~~~~~L~~H~~~h~   61 (70)
T 1x5w_A            9 PEKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKKFH   61 (70)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCCSCS-EECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHHHcCCCCC-EeCCCCCCccCCHHHHHHHHHHHh
Confidence            58899999999999999999999999888 999999999999999999999886

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.81  E-value=2.7e-20  Score=70.89  Aligned_cols=53  Identities=28%  Similarity=0.642  Sum_probs=50.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|.+|++.|.....|..|+++|+
T Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~-~~C~~C~~~f~~~~~L~~H~~~H~   66 (72)
T 1x6e_A           14 PYGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINHQRIHT   66 (72)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHGGGCSCC-EECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHHhcCCCCC-eECCCCCcccCCHHHHHHHHHhcC
Confidence            68899999999999999999999999888 999999999999999999999875

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.80  E-value=4.9e-20  Score=69.06  Aligned_cols=54  Identities=26%  Similarity=0.532  Sum_probs=49.3

Q ss_pred             CCCCccccccccchhhHHhHHHH-H-hCCCCCccCCCCCcccccchHHHHHHHhhcC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKF-E-CGQEPKYQCPQCPYRAKQNAHLTTHMAIKHY   55 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~-~-~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~   55 (55)
                      ||.|..|++.|.....|..|+.. | .++++ |.|+.|++.|...+.|..|++++|.
T Consensus        10 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~-~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A           10 TYRCKVCSRVYTHISNFCRHYVTSHKRNVKV-YPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHSSSSCCC-EECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ceECCCCcchhCCHHHHHHHHHHHcCCCCcC-eECCCCCCccCCHHHHHHHHHHHcC
Confidence            57899999999999999999998 6 46676 9999999999999999999999874

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.80  E-value=1.1e-19  Score=67.01  Aligned_cols=52  Identities=25%  Similarity=0.620  Sum_probs=48.6

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHH-hh
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMA-IK   53 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~-~~   53 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|..|++.|...+.|..|++ +|
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~~H   54 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHAQKIH   54 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSSCS-EECTTTCCEESSHHHHHHHHTTTS
T ss_pred             cCcCCCCccccCCHHHHHHHHHHhCCCCC-ccCCCCCCccCCHHHHHHHHHHHc
Confidence            68999999999999999999999999887 999999999999999999974 54

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.80  E-value=1.3e-19  Score=72.34  Aligned_cols=52  Identities=25%  Similarity=0.398  Sum_probs=48.2

Q ss_pred             CCCCccccccc-cchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHH-HHhhc
Q psy12023          1 MFMCDVCGKGY-KYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTH-MAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~-~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h-~~~~~   54 (55)
                      ||.|..|++.| .....|..|+.+| ++++ |.|.+|++.|...+.|..| +++|.
T Consensus        34 ~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~-~~C~~Cgk~F~~~~~L~~H~~~~H~   87 (96)
T 2ctd_A           34 SVSCPTCQAVGRKTIEGLKKHMENC-KQEM-FTCHHCGKQLRSLAGMKYHVMANHN   87 (96)
T ss_dssp             CEECTTTCSCEESSHHHHHHHHHHH-CCCC-CCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             CcCCCCCCCCcccCHHHHHHHHHHH-CCCC-eECCCCCCeeCCHHHHHHHhHHhcC
Confidence            57899999999 9999999999999 8777 9999999999999999999 87764

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.79  E-value=9.7e-20  Score=76.18  Aligned_cols=53  Identities=21%  Similarity=0.455  Sum_probs=32.5

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|+.|++.|.....|..|+.+|+++++ |.|++|++.|...+.|..|++++|
T Consensus        50 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~hh  102 (133)
T 2lt7_A           50 KYPCRYCEKVFPLAEYRTKHEIHHTGERR-YQCLACGKSFINYQFMSSHIKSVH  102 (133)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHHHHTCCC-EEESSSCCEESSHHHHHHHHHHHT
T ss_pred             CeeCCccCeecccccchhhhccccCCCcc-ccCCCCCCCcCCHHHHHHHhHHhc
Confidence            35566666666666666666666666555 666666666666666666666554

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.79  E-value=1e-19  Score=69.96  Aligned_cols=53  Identities=28%  Similarity=0.732  Sum_probs=50.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|.+|++.|.....|..|+++|+
T Consensus        18 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~L~~H~~~H~   70 (77)
T 2cot_A           18 RYKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGHHRVHT   70 (77)
T ss_dssp             SSBCSSSCCBCSCHHHHHHHHTTTCCSCS-EECSSSCCEESSHHHHHHHGGGSC
T ss_pred             CEECCCCCcccCCHHHHHHHHHHcCCCcC-eeCCCCCCccCCHHHHHHHHHHhC
Confidence            58999999999999999999999999887 999999999999999999999886

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=4.7e-20  Score=73.71  Aligned_cols=53  Identities=23%  Similarity=0.412  Sum_probs=50.1

Q ss_pred             CCCCcccccccc-chhhHHhHHHHHhC-CCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYK-YKNGIYRHKKFECG-QEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~-~~~~~~~~~~~~~~-~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|. ....|..|+.+|.+ +++ |.|.+|++.|.....|..|+++||
T Consensus        24 ~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~-~~C~~C~k~F~~~~~L~~H~~~h~   78 (98)
T 2gqj_A           24 EAVCPTCNVVTRKTLVGLKKHMEVCQKLQDA-LKCQHCRKQFKSKAGLNYHTMAEH   78 (98)
T ss_dssp             CCCCTTTCCCCSSCSHHHHHHHHHHHHHHHH-HSCSSSCCCCSCHHHHHHHHHHHS
T ss_pred             CcCCCCCCCChhhhHHHHHHHHHHHcCCCCC-EECCCCCCccCCHHHHHHHHHHHc
Confidence            589999999999 99999999999998 777 999999999999999999999887

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.79  E-value=2.2e-19  Score=70.46  Aligned_cols=53  Identities=21%  Similarity=0.585  Sum_probs=50.5

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|..|++.|.....|..|++++|
T Consensus         3 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~h~   55 (88)
T 1llm_C            3 PFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHRDIQH   55 (88)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHCCCC-EECTTTCCEESSHHHHHHHHHHHT
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHcCCCCC-ccCCCCCCccCCHHHHHHHHHHhC
Confidence            68999999999999999999999999888 999999999999999999999876

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=2e-19  Score=69.25  Aligned_cols=53  Identities=19%  Similarity=0.456  Sum_probs=48.9

Q ss_pred             CCCCccccccccchhhHHhHHHHHhC---CCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECG---QEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~---~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|.....|..|+.+|.+   +++ |.|..|++.|.....|..|++.+|
T Consensus         7 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~-~~C~~C~k~f~~~~~L~~H~~~~H   62 (78)
T 2d9h_A            7 GLQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSH   62 (78)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHHHTTTCC-EECTTTCCEESSHHHHHHHHHHTS
T ss_pred             CeECCCCCCeeCCHHHHHHHHHHhhccCCCcc-cCCCCCCchhCCHHHHHHHHHHhC
Confidence            68999999999999999999999996   666 999999999999999999997665

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.78  E-value=1.9e-19  Score=75.29  Aligned_cols=53  Identities=21%  Similarity=0.400  Sum_probs=50.1

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|+.|++.|.....|..|+.+|+++++ |.|+.|++.|...+.|..|+++|.
T Consensus        22 ~y~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~   74 (133)
T 2lt7_A           22 YYICIVCKRSYVCLTSLRRHFNIHSWEKK-YPCRYCEKVFPLAEYRTKHEIHHT   74 (133)
T ss_dssp             EEEETTTCCEESCHHHHHHHHHHHHCCSC-EECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CeECCCCCCCcCCHHHHHHHHHHcCCCCC-eeCCccCeecccccchhhhccccC
Confidence            57899999999999999999999999888 999999999999999999998873

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.77  E-value=8e-19  Score=67.82  Aligned_cols=53  Identities=26%  Similarity=0.580  Sum_probs=39.2

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|..|++.|...+.|..|+++|+
T Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~H~   81 (82)
T 2kmk_A           29 PYPCQYCGKRFHQKSDMKKHTFIHTGEKP-HKCQVCGKAFSQSSNLITHSRKHT   81 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCC-EECTTTSCEESSHHHHHHHHHHHC
T ss_pred             CeeCCcCChhhCCHHHHHHHHHHhcCCCC-CcCCCcchhhCChHHHHHHHHhhC
Confidence            45677777777777777777777777666 777777777777777777777765

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.76  E-value=1.4e-18  Score=66.15  Aligned_cols=53  Identities=28%  Similarity=0.678  Sum_probs=49.1

Q ss_pred             CCCCc--cccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCD--VCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~--~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|.  .|++.|.....|..|+.+|.++++ |.|.+|++.|...+.|..|+++|.
T Consensus        19 ~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           19 PYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CEECSSTTBCCEESSHHHHHHHHHHHHCCCC-EECTTTCCEESCHHHHHHHHTTCC
T ss_pred             ccCCcCCCCCCccCCHHHHHHHHHhhCCCCC-eECCCCCchhCCHHHHHHHHHhcC
Confidence            57886  699999999999999999999888 999999999999999999998873

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.76  E-value=9.6e-19  Score=67.20  Aligned_cols=53  Identities=17%  Similarity=0.461  Sum_probs=48.2

Q ss_pred             CCCCccccccccchhhHHhHHH-HHhCC-CCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKK-FECGQ-EPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~-~~~~~-~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|.....|..|+. .|.++ ++ |.|..|++.|.....|..|++.+|
T Consensus        15 ~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~-~~C~~C~~~f~~~~~L~~H~~~~H   69 (77)
T 2ct1_A           15 PYECYICHARFTQSGTMKMHILQKHTENVAK-FHCPHCDTVIARKSDLGVHLRKQH   69 (77)
T ss_dssp             SEECTTTCCEESCHHHHHHHHHHHSSSSCSS-EECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CeECCCcCchhCCHHHHHHHHHHhcCCCCCc-cCCCCCCCccCCHHHHHHHHHHhC
Confidence            6889999999999999999997 67765 55 999999999999999999999876

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.75  E-value=2.2e-18  Score=67.56  Aligned_cols=53  Identities=19%  Similarity=0.536  Sum_probs=41.8

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|..|++.|...+.|..|+++|+
T Consensus        34 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~H~   86 (90)
T 1a1h_A           34 PFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHTKIHL   86 (90)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHCCCC-EECTTTCCEESSHHHHHHHHGGGG
T ss_pred             CccCCCCCcccCCHHHHHHHHHHcCCCCC-ccCCCCCchhCCHHHHHHHHHHhc
Confidence            46777888888888888888888887776 888888888888888888887765

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=1.1e-18  Score=65.49  Aligned_cols=50  Identities=26%  Similarity=0.503  Sum_probs=46.3

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCC-CCCcccccchHHHHHHHhh
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP-QCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~-~c~~~f~~~~~l~~h~~~~   53 (55)
                      ||.|..|++.|. ...|..|+.+ .++++ |.|+ .|++.|...+.|..|+++|
T Consensus        10 ~~~C~~C~k~f~-~~~L~~H~~~-~~~~p-~~C~~~C~k~f~~~~~L~~H~~~h   60 (66)
T 2eod_A           10 TQPCTYCTKEFV-FDTIQSHQYQ-CPRLP-VACPNQCGVGTVAREDLPGHLKDS   60 (66)
T ss_dssp             EEECSSSCCEEE-HHHHHHHHHH-CSSSE-EECTTCCSCCEEETTTHHHHHHTT
T ss_pred             CeeccccCCccC-HHHHHHHHHH-cCCcC-ccCCcccCcccccHHHHHHHHHhh
Confidence            578999999999 9999999998 88777 9999 9999999999999999886

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.74  E-value=4.4e-18  Score=70.42  Aligned_cols=52  Identities=19%  Similarity=0.478  Sum_probs=48.6

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhcC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKHY   55 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~   55 (55)
                      ||.|..|++.|.....|..|+.+|  +++ |.|..|++.|...+.|..|+++||.
T Consensus        74 ~~~C~~C~k~f~~~~~l~~H~~~H--~~~-~~C~~C~k~f~~~~~l~~H~~~h~~  125 (129)
T 2wbt_A           74 QFVCPLCLMPFSSSVSLKQHIRYT--EHT-KVCPVCKKEFTSTDSALDHVCKKHN  125 (129)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHHT--CCC-CBCTTTCCBCSSHHHHHHHHHHTTC
T ss_pred             CeECCCCCcccCCHhHHHHHHHHC--CCC-CCCCCCCcccCCHHHHHHHHHHHCC
Confidence            688999999999999999999999  577 9999999999999999999999874

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.74  E-value=5.3e-18  Score=68.18  Aligned_cols=53  Identities=21%  Similarity=0.614  Sum_probs=35.1

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|.+|++.|.....|..|+++|+
T Consensus        45 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~L~~H~~~H~   97 (106)
T 2ee8_A           45 PYTCDICHKAFRRQDHLRDHRYIHSKEKP-FKCQECGKGFCQSRTLAVHKTLHM   97 (106)
T ss_dssp             CCBCSSSCCBCSCHHHHHHHGGGSCCCCT-TSCSSSCCCCSSHHHHHHHHHHTT
T ss_pred             CcCCCCccchhCCHHHHHHHHHHhCCCCC-eECCCcCCcccCHHHHHHHHHHhC
Confidence            35666666666666666666666666555 666667766666666666666654

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=2.2e-18  Score=69.48  Aligned_cols=53  Identities=19%  Similarity=0.317  Sum_probs=47.4

Q ss_pred             CCCCccccccccchhhHHhHHH-HH---hCCCCCccCCCCCcccccchHHHHH-HHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKK-FE---CGQEPKYQCPQCPYRAKQNAHLTTH-MAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~-~~---~~~~~~~~c~~c~~~f~~~~~l~~h-~~~~~   54 (55)
                      ||.|..|++.|...+.|..|++ +|   .++++ |.|.+|++.|...+.|..| +++|.
T Consensus        18 py~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekp-f~C~~Cgk~F~~~~~L~~H~~r~Ht   75 (102)
T 2ghf_A           18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSS-YVCVECNFLTKRYDALSEHNLKYHP   75 (102)
T ss_dssp             SEECSSCSCEESCHHHHHHHHHHHCSSCCCSCC-EEETTTTEEESSTHHHHTHHHHTST
T ss_pred             CcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCC-cCCCCCCcccCCHHHHHHHHHHhcC
Confidence            6889999999999999999997 58   45666 9999999999999999999 77764

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.73  E-value=4.4e-18  Score=67.40  Aligned_cols=52  Identities=21%  Similarity=0.685  Sum_probs=32.4

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.|..|++.|.....|..|+.+|.++++ |.|.+|++.|.....|..|+++|+
T Consensus        37 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~   88 (96)
T 2dmd_A           37 YKCKTCDYAAADSSSLNKHLRIHSDERP-FKCQICPYASRNSSQLTVHLRSHT   88 (96)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHSCCCCC-EECSSSSCEESSHHHHHHHHTTCC
T ss_pred             EeCCCCCCccCCHHHHHHHHHHhCCCCC-ccCCCCCCccCCHHHHHHHHHHhc
Confidence            4566666666666666666666666555 666666666666666666666554

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.72  E-value=1e-17  Score=64.70  Aligned_cols=53  Identities=28%  Similarity=0.637  Sum_probs=50.1

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|..|++.|.....|..|+++|+
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~   53 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFIHT   53 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCC-EECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCC-eeCCcCChhhCCHHHHHHHHHHhc
Confidence            68999999999999999999999999888 999999999999999999998775

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.71  E-value=1.5e-17  Score=64.55  Aligned_cols=53  Identities=32%  Similarity=0.701  Sum_probs=49.3

Q ss_pred             CCCC--ccccccccchhhHHhHHHHHhCCCCCccCCC--CCcccccchHHHHHHHhhc
Q psy12023          1 MFMC--DVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ--CPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c--~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|  ..|++.|.....|..|+.+|.++++ |.|+.  |++.|.....|..|+++|+
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~   57 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRHEKVHA   57 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCC-EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCC-eeCCCCCCcCccCCHHHHHHHHHHhC
Confidence            6889  8999999999999999999999887 99988  9999999999999998875

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.71  E-value=1.1e-17  Score=63.48  Aligned_cols=52  Identities=25%  Similarity=0.604  Sum_probs=47.5

Q ss_pred             CCCCcc--ccccccchhhHHhHHHHHhCCCCCccCCC--CCcccccchHHHHHHHhh
Q psy12023          1 MFMCDV--CGKGYKYKNGIYRHKKFECGQEPKYQCPQ--CPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus         1 p~~c~~--c~~~~~~~~~~~~~~~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~   53 (55)
                      +|.|..  |++.|.....|..|+.+|.++++ |.|.+  |++.|.....|..|+++|
T Consensus        17 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           17 SHICSHPGCGKTYFKSSHLKAHTRTHTGEKP-FSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CEECSSTTTCCEESSHHHHHHHHHHHSSSCS-EECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ceeCCCCCCccccCCHHHHHHHHHhcCCCCC-ccCCCCCCCcccCCHHHHHhHhhcC
Confidence            467888  99999999999999999999888 99965  999999999999998875

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=7.3e-18  Score=68.18  Aligned_cols=51  Identities=31%  Similarity=0.666  Sum_probs=29.1

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      |.|..|++.|.....|..|+.+|.++++ |.|..|++.|.....|..|++.+
T Consensus        38 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~~   88 (110)
T 2csh_A           38 YGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAKRFMWRDSFHRHVTSC   88 (110)
T ss_dssp             EECTTTSCEESSSHHHHHHHTTTCCCCC-EECSSSCCEESCHHHHHHHHHHH
T ss_pred             ccCCCCCcccCCHHHHHHHHHHcCCCCC-eeCCCCcchhcCHHHHHHHHHHc
Confidence            4555555555555555555555555544 55555555555555555555544

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.70  E-value=2.1e-17  Score=67.71  Aligned_cols=53  Identities=28%  Similarity=0.642  Sum_probs=44.8

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +|.|..|++.|.....|..|+.+|.++++ |.|.+|++.|.....|..|++..|
T Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~~H  118 (124)
T 2dlq_A           66 VFTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHMIKLH  118 (124)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHSSSCS-EECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CeECCCCCCccCCHHHHHHHHHHcCCCCC-ccCCCccchhCCHHHHHHHHHHHC
Confidence            46788888888888888889888888777 899999999998888998887544

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.70  E-value=1.9e-17  Score=65.42  Aligned_cols=50  Identities=30%  Similarity=0.647  Sum_probs=33.6

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCC--CCCccCCCCCcccccchHHHHHHH
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQ--EPKYQCPQCPYRAKQNAHLTTHMA   51 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~--~~~~~c~~c~~~f~~~~~l~~h~~   51 (55)
                      ||.|..|++.|.....|..|+.+|.++  ++ |.|.+|++.|.....|..|++
T Consensus        35 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~-~~C~~C~~~f~~~~~L~~H~~   86 (95)
T 2yt9_A           35 PYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP-YICQSCGKGFSRPDHLNGHIK   86 (95)
T ss_dssp             SEECSSSCCEESCHHHHHHHHHHHCCCCCSS-BCCSSSCCCBSSHHHHHHHHH
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHhcCCCCCc-eECCCccchhCCHHHHHHHHH
Confidence            356666777777666677777666665  44 777777777777777777765

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.70  E-value=3.1e-17  Score=66.91  Aligned_cols=51  Identities=22%  Similarity=0.694  Sum_probs=28.8

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccC--CCCCcccccchHHHHHHHhh
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQC--PQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c--~~c~~~f~~~~~l~~h~~~~   53 (55)
                      |.|..|++.|.....|..|+.+|.++++ |.|  +.|++.|...+.|..|+++|
T Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           67 FQCKTCQRKFSRSDHLKTHTRTHTGEKP-FSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHHTCCC-EECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             ccCCccCchhCCHHHHHHHHHHhcCCCC-eeCCCCCCccccCCHHHHHHHHhcC
Confidence            4555555555555555555555555554 555  45555555555555555543

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=3.4e-17  Score=63.68  Aligned_cols=53  Identities=17%  Similarity=0.340  Sum_probs=48.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCC----CCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQ----EPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~----~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|.....|..|+..+..+    ++ |.|.+|++.|.....|..|+++|+
T Consensus        15 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~-~~C~~C~~~f~~~~~L~~H~~~h~   71 (86)
T 1x6h_A           15 PYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA-FVCSKCGKTFTRRNTMARHADNCA   71 (86)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHHTTCSSCCCCC-EECSSSCCEESCHHHHHHHHHHCC
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcc-eECCCCCChhCCHHHHHHHHHHcc
Confidence            588999999999999999999887765    45 999999999999999999999886

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.69  E-value=3.1e-17  Score=64.95  Aligned_cols=53  Identities=32%  Similarity=0.765  Sum_probs=50.1

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|..|++.|.....|..|+++|+
T Consensus         8 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~   60 (96)
T 2dmd_A            8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRIHS   60 (96)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCCCCS-EECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CeECCCCCCccCCHHHHHHHHHhcCCCCC-EeCCCCCCccCCHHHHHHHHHHhC
Confidence            68999999999999999999999999887 999999999999999999999875

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.69  E-value=5.9e-17  Score=65.10  Aligned_cols=53  Identities=25%  Similarity=0.642  Sum_probs=49.9

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +|.|..|++.|.....|..|+.+|.++++ |.|.+|++.|.....|..|+++|+
T Consensus        17 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~   69 (106)
T 2ee8_A           17 EFICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHKAFRRQDHLRDHRYIHS   69 (106)
T ss_dssp             CCBCSSSCCBCSSHHHHHHHHHHHCCSCC-CBCSSSCCBCSCHHHHHHHGGGSC
T ss_pred             CeECCCCCCccCCHHHHHHHHHHcCCCCC-cCCCCccchhCCHHHHHHHHHHhC
Confidence            57899999999999999999999999888 999999999999999999998875

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.69  E-value=2.7e-17  Score=71.51  Aligned_cols=53  Identities=25%  Similarity=0.688  Sum_probs=39.0

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|+.|++.|.....|..|+++|+
T Consensus       133 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~-~~C~~C~~~f~~~~~L~~H~~~H~  185 (190)
T 2i13_A          133 PYKCPECGKSFSREDNLHTHQRTHTGEKP-YKCPECGKSFSRRDALNVHQRTHT  185 (190)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHCCCC-EECTTTCCEESSHHHHHHHHTTC-
T ss_pred             CeECCCCCcccCCHHHHHHHHHhcCCCCC-eECCCCCCccCCHHHHHHHHHhcC
Confidence            46677777777777777777777777666 777777777777777777777664

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.69  E-value=6.7e-17  Score=64.31  Aligned_cols=53  Identities=25%  Similarity=0.556  Sum_probs=45.6

Q ss_pred             CCCCc--cccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCD--VCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~--~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +|.|.  .|++.|.....|..|+.+|.++++ |.|.+|++.|.....|..|+++|+
T Consensus        45 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~H~   99 (100)
T 2ebt_A           45 PYKCTWEGCDWRFARSDELTRHYRKHTGAKP-FQCGVCNRSFSRSDHLALHMKRHQ   99 (100)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHHHHTSCCS-CBCSSSCCBCSSHHHHHHHHHHHC
T ss_pred             CeeCCCCCCCCccCCHHHHHHHHHHhCCCCC-eECCCCcCccCCHHHHHHHHHHhC
Confidence            46675  689999998899999999988877 999999999999999999998875

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.69  E-value=4.5e-17  Score=63.67  Aligned_cols=52  Identities=29%  Similarity=0.661  Sum_probs=42.5

Q ss_pred             CCCCc--cccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023          1 MFMCD--VCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus         1 p~~c~--~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      ||.|.  .|++.|.....|..|+.+|.++++ |.|..|++.|...+.|..|+++|
T Consensus        35 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           35 PYHCDWDGCGWKFARSDELTRHYRKHTGHRP-FQCQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHHHHCCCC-EECSSSSCEESSHHHHHHHGGGG
T ss_pred             CcCCCCCCCCCccCCHHHHHHHHHHcCCCCC-ccCCCCCcccCCHHHHHHHHHhh
Confidence            45675  588888888888888888888777 88888888888888888888776

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.68  E-value=8.3e-17  Score=63.59  Aligned_cols=53  Identities=30%  Similarity=0.697  Sum_probs=50.0

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +|.|..|++.|.....|..|+.+|.++++ |.|.+|++.|.....|..|+++|+
T Consensus         7 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~   59 (95)
T 2yt9_A            7 GVACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRSHD   59 (95)
T ss_dssp             CEECSSSCCEESSSHHHHHHHHHSCSSCS-EECSSSCCEESCHHHHHHHHHHHC
T ss_pred             CeECCCCCCccCChHHHHHHHHhcCCCCC-CcCCCCCCccCCHHHHHHHHHHhc
Confidence            57899999999999999999999999887 999999999999999999999875

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=1.2e-16  Score=61.37  Aligned_cols=53  Identities=28%  Similarity=0.621  Sum_probs=47.6

Q ss_pred             CCCCcc--ccccccchhhHHhHHH-HHhCCCCCccCCC--CCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDV--CGKGYKYKNGIYRHKK-FECGQEPKYQCPQ--CPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~--c~~~~~~~~~~~~~~~-~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~   54 (55)
                      +|.|..  |++.|.....|..|+. .|.++++ |.|..  |++.|.....|..|+++|+
T Consensus         7 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~-~~C~~~~C~k~f~~~~~L~~H~~~H~   64 (79)
T 2dlk_A            7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS-FSCPEPACGKSFNFKKHLKEHMKLHS   64 (79)
T ss_dssp             SEECSSTTTCCEESSHHHHHHHHHHGGGSCCC-EECSCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CccCCCCCCcCccCCHHHHHHHHHHHhCCCCC-eECCCCCCcCccCCHHHHHHHHHHhC
Confidence            355665  9999999999999999 7999887 99998  9999999999999999875

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=1.6e-16  Score=64.23  Aligned_cols=52  Identities=35%  Similarity=0.703  Sum_probs=48.9

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.| .|++.|.....|..|+..|.++++ |.|.+|++.|.....|..|+++|+
T Consensus        10 ~~~C-~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~   61 (110)
T 2csh_A           10 LYPC-QCGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKIHT   61 (110)
T ss_dssp             CEEC-TTSCEESSHHHHHHHHHHHSCCCS-EECTTTSCEESSSHHHHHHHTTTC
T ss_pred             CEec-cCCCccCCHHHHHHHHHHcCCCcC-ccCCCCCcccCCHHHHHHHHHHcC
Confidence            5789 899999999999999999999887 999999999999999999999875

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.66  E-value=7.4e-17  Score=65.02  Aligned_cols=49  Identities=16%  Similarity=0.337  Sum_probs=39.9

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHH
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMA   51 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~   51 (55)
                      ||.|..|++.|.....|..|+. |.++++ |.|.+|++.|.....|..|++
T Consensus        42 ~~~C~~C~~~f~~~~~l~~H~~-H~~~~~-~~C~~C~~~f~~~~~L~~H~~   90 (107)
T 1wjp_A           42 AAVCPYCSLRFFSPELKQEHES-KCEYKK-LTCLECMRTFKSSFSIWRHQV   90 (107)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHH-HCSTGG-GEEGGGTEECSSHHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHH-cCCCCC-ccCccccchhCCHHHHHHHHH
Confidence            5678888888888888888875 777776 888888888888888888886

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.65  E-value=2.1e-16  Score=61.88  Aligned_cols=53  Identities=28%  Similarity=0.675  Sum_probs=49.2

Q ss_pred             CCCCc--cccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCD--VCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~--~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|.  .|++.|.....|..|+.+|.++++ |.|..|++.|.....|..|+++|+
T Consensus         4 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~   58 (90)
T 1a1h_A            4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHT   58 (90)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHHHHHCCCC-EECTTTCCEESCHHHHHHHHHHHH
T ss_pred             ceECCCCCCCCccCCHHHHHHHHHHhCCCCC-ccCCCCCcccCCHHHHHHHHHHcC
Confidence            57887  699999999999999999999888 999999999999999999998874

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.64  E-value=3e-16  Score=63.94  Aligned_cols=51  Identities=27%  Similarity=0.712  Sum_probs=28.2

Q ss_pred             CCCc--cccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023          2 FMCD--VCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus         2 ~~c~--~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      |.|.  .|++.|.....|..|+.+|.++++ |.|.+|++.|.....|..|+++|
T Consensus        37 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h   89 (119)
T 2jp9_A           37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKP-FQCKTCQRKFSRSDHLKTHTRTH   89 (119)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHHCCCC-EECTTTCCEESCHHHHHHHHHHH
T ss_pred             ccCCCCCCcCccCCHHHHHHHHHHcCCCCC-ccCCccCchhCCHHHHHHHHHHh
Confidence            4454  455555555555555555555544 55555555555555555555544

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.64  E-value=7.7e-16  Score=63.05  Aligned_cols=52  Identities=25%  Similarity=0.493  Sum_probs=38.2

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      +|.|..|++.|.....|..|+.+|.++++ |.|..|++.|.....|..|++.+
T Consensus         7 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~~   58 (124)
T 2dlq_A            7 GVECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEHEARN   58 (124)
T ss_dssp             SCCCTTTCCCCSSHHHHHHHHHHHSSCCS-CBCTTTCCBCSSHHHHHHHHHHC
T ss_pred             CCCCCCCCCcCCCHHHHHHHHHhCCCCCC-eECCCCCchhcCHHHHHHHHhhh
Confidence            46777777777777777777777777666 77777777777777777776643

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.63  E-value=4.5e-16  Score=67.66  Aligned_cols=53  Identities=26%  Similarity=0.672  Sum_probs=39.7

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|..|++.|.....|..|+++|+
T Consensus       105 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~L~~H~~~H~  157 (190)
T 2i13_A          105 PYACPECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTHQRTHT  157 (190)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHHCCCC-EECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHhCCCCC-eECCCCCcccCCHHHHHHHHHhcC
Confidence            45677777777777777777777777666 777777777777777777777664

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=5.4e-17  Score=66.03  Aligned_cols=51  Identities=18%  Similarity=0.189  Sum_probs=43.6

Q ss_pred             CCccccccc--cchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          3 MCDVCGKGY--KYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         3 ~c~~c~~~~--~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      .|..|++.|  .....|..|+.+|.++++ |.|.+|++.|...+.|..|++++|
T Consensus        52 ~C~~C~~~f~f~~~~~l~~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~hh  104 (115)
T 2dmi_A           52 TDNNNPKRWSKPRKRSLLEMEGKEDAQKV-LKCMYCGHSFESLQDLSVHMIKTK  104 (115)
T ss_dssp             CCCCCCSCCSSCCCCCCCCCCCSCCCCSS-CBCSSSCCBCSSHHHHHHHHHHTT
T ss_pred             cCCCCCcccccccHHHHHHHhhccCCCcc-eECCCCCCccCCHHHHHHHHHHhC
Confidence            477888877  777778888888888777 999999999999999999998875

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.62  E-value=2.8e-16  Score=66.41  Aligned_cols=53  Identities=25%  Similarity=0.630  Sum_probs=34.5

Q ss_pred             CCCCcc--ccccccchhhHHhHH-HHHhCCCCCccCCC--CCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDV--CGKGYKYKNGIYRHK-KFECGQEPKYQCPQ--CPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~--c~~~~~~~~~~~~~~-~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..  |++.|.....|..|+ .+|.++++ |.|.+  |++.|...+.|..|++++|
T Consensus        97 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~-~~C~~~~C~~~f~~~~~L~~H~~~hh  154 (155)
T 2gli_A           97 PYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP-YVCKLPGCTKRYTDPSSLRKHVKTVH  154 (155)
T ss_dssp             CEECCSTTCCCEESSSSTTHHHHHHTTCSCCC-EECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CeeCCCCCCCCccCCHHHHHHHHHHhcCCCCC-eeCCCCCCccccCCHHHHHHHHHhhc
Confidence            355665  666666666666666 56666555 66666  6666666666666666665

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.62  E-value=3.3e-16  Score=56.71  Aligned_cols=41  Identities=22%  Similarity=0.567  Sum_probs=38.0

Q ss_pred             CCCCccccccccchhhHHhHHH-HHhCCCCCccCCCCCccccc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKK-FECGQEPKYQCPQCPYRAKQ   42 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~-~~~~~~~~~~c~~c~~~f~~   42 (55)
                      ||.|..|++.|.....|..|+. +|.++++ |.|.+|++.|.+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~-~~C~~C~k~F~~   53 (54)
T 2eps_A           12 PYICQSCGKGFSRPDHLNGHIKQVHTSERP-HKCQVWVSGPSS   53 (54)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHTSCCCCC-CCSSSSCCSSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCCCCC-ccCCCCCCCCCC
Confidence            5889999999999999999997 8999888 999999999975

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.61  E-value=8.5e-16  Score=66.78  Aligned_cols=53  Identities=30%  Similarity=0.684  Sum_probs=47.3

Q ss_pred             CCCC--ccccccccchhhHHhHHHHHhCCCCCccCCC--CCcccccchHHHHHHHhhc
Q psy12023          1 MFMC--DVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ--CPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c--~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~   54 (55)
                      +|.|  ..|++.|.....|..|+.+|.++++ |.|+.  |++.|...+.|..|+++|+
T Consensus       104 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~~~C~k~F~~~~~L~~H~~~H~  160 (190)
T 1tf6_A          104 VYVCHFENCGKAFKKHNQLKVHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRHEKVHA  160 (190)
T ss_dssp             CCEECSSSSCEECSSHHHHHHHHGGGSSSCS-SBCCSSSCCCBCSSHHHHHHHHTSSC
T ss_pred             eeeCCCCCCccccCCHHHHHHHHHHhCCCCC-ccCCCCCCCchhcCHHHHHHHHHHhC
Confidence            4678  8899999999999999999999887 99987  9999999999999998875

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=3.2e-15  Score=59.03  Aligned_cols=53  Identities=15%  Similarity=0.310  Sum_probs=46.8

Q ss_pred             CCCccccccccchhhHHhHHHH-HhCCCCC-------ccCCCCCcccccchHHHHHHHhhc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKF-ECGQEPK-------YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~-~~~~~~~-------~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +.|..|++.|.....|..|+.+ |.++++.       |.|..|++.|.....|..|+++|.
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~   86 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT   86 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHH
T ss_pred             CcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcC
Confidence            4588999999999999999998 8875431       799999999999999999999875

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.60  E-value=1.8e-15  Score=62.06  Aligned_cols=53  Identities=28%  Similarity=0.711  Sum_probs=37.1

Q ss_pred             CCCCcc--ccccccchhhHHhHHHHHhCCCCCccCC--CCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDV--CGKGYKYKNGIYRHKKFECGQEPKYQCP--QCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~--c~~~~~~~~~~~~~~~~~~~~~~~~~c~--~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..  |++.|.....|..|+.+|.++++ |.|.  .|++.|...+.|..|+++|+
T Consensus        62 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~L~~H~~~H~  118 (124)
T 1ubd_C           62 PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP-YVCPFDGCNKKFAQSTNLKSHILTHA  118 (124)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHHHHCCCC-CCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CeeCCCCCCcCccCCHHHHHHHHHHhCCCCc-eECCCCCCCCccCCHHHHHHHHHHHc
Confidence            355653  77777777777777777777666 7774  47777777777777777664

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.59  E-value=1.1e-15  Score=62.76  Aligned_cols=53  Identities=30%  Similarity=0.673  Sum_probs=34.6

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCC--CCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ--CPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~   54 (55)
                      +|.|..|++.|.....|..|+.+|.++++ |.|..  |++.|.....|..|+++|+
T Consensus        34 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~   88 (124)
T 1ubd_C           34 VHVCAECGKAFVESSKLKRHQLVHTGEKP-FQCTFEGCGKRFSLDFNLRTHVRIHT   88 (124)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCCCC-EECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CeECCCCCchhCCHHHHHHHHHHcCCCCC-eeCCCCCCcCccCCHHHHHHHHHHhC
Confidence            35566666666666666666666666655 66654  6777766666666666553

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.57  E-value=7.3e-16  Score=65.25  Aligned_cols=52  Identities=25%  Similarity=0.498  Sum_probs=33.9

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCC--CCcccccchHHHHHHHhhc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ--CPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.|..|++.|.....|..|+.+|.++++ |.|..  |++.|.....|..|+++|+
T Consensus        63 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~L~~H~~~h~  116 (155)
T 2rpc_A           63 EECPREGKSFKAKYKLVNHIRVHTGEKP-FPCPFPGCGKIFARSENLKIHKRTHT  116 (155)
T ss_dssp             TTCTTSSCCCSSHHHHHHHTHHHHCCCS-EECSCTTTCCEESCHHHHHHHHTTTC
T ss_pred             cCCCCcccccCCHHHHHHHHHhcCCCCc-ccCCcCCCCCccCCHHHHHHHHHhhC
Confidence            4566666666666666666666666555 66665  6666666666666666553

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.57  E-value=9.2e-16  Score=55.50  Aligned_cols=46  Identities=24%  Similarity=0.457  Sum_probs=41.9

Q ss_pred             cccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          8 GKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ++.|.....|..|+.+|+++++ |.|.+|++.|...+.|..|+++|.
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   48 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQP-ATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCC-EECTTTCCEESSHHHHHHHHHHHT
T ss_pred             ccccCCCcchhhHHHhcCCCCC-ccCCCCCcccCCHHHHHHHHHHhc
Confidence            4677888889999999999888 999999999999999999999875

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.57  E-value=5.7e-15  Score=62.50  Aligned_cols=53  Identities=26%  Similarity=0.624  Sum_probs=41.2

Q ss_pred             CCCCcc--ccccccchhhHHhHHHHHhCCCCCccCCC--CCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDV--CGKGYKYKNGIYRHKKFECGQEPKYQCPQ--CPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~--c~~~~~~~~~~~~~~~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..  |++.|.....|..|+.+|.++++ |.|..  |++.|.....|..|+++|+
T Consensus        90 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~-~~C~~~~C~k~f~~~~~L~~H~~~H~  146 (155)
T 2rpc_A           90 PFPCPFPGCGKIFARSENLKIHKRTHTGEKP-FKCEFEGCDRRFANSSDRKKHMHVHT  146 (155)
T ss_dssp             SEECSCTTTCCEESCHHHHHHHHTTTCSSCS-BCCSSTTCCCCBSSHHHHHHSSTTTT
T ss_pred             cccCCcCCCCCccCCHHHHHHHHHhhCCCCC-ccCCCCCCCCccCCHHHHHHHHHHhc
Confidence            466776  88888888888888888887776 88875  8888888888888877765

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.55  E-value=7.5e-15  Score=56.79  Aligned_cols=50  Identities=28%  Similarity=0.629  Sum_probs=46.9

Q ss_pred             CCCCcc--ccccccchhhHHhHHHHHhCCCCCccCCC---CCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDV--CGKGYKYKNGIYRHKKFECGQEPKYQCPQ---CPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~--c~~~~~~~~~~~~~~~~~~~~~~~~~c~~---c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..  |++.|.....|..|+.+|.+    |.|..   |++.|...+.|..|+++||
T Consensus        31 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~----~~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           31 PYECPHEGCDKRFSLPSRLKRHEKVHAG----YPCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHS----EECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             CeeCCCCCCcCccCCHHHHHHHHHHhCC----CCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            578988  99999999999999999998    89999   9999999999999999886

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.54  E-value=5.8e-15  Score=57.61  Aligned_cols=53  Identities=28%  Similarity=0.666  Sum_probs=48.3

Q ss_pred             CCCCcc--ccccccchhhHHhHHHHHhCCCCCccCC--CCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDV--CGKGYKYKNGIYRHKKFECGQEPKYQCP--QCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~--c~~~~~~~~~~~~~~~~~~~~~~~~~c~--~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +|.|..  |++.|.....|..|+.+|.++++ |.|+  .|++.|.....|..|+++|+
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~   61 (89)
T 2wbs_A            5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRHYRKHT   61 (89)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHTTSCSSCC-EECCSTTTCCEESSHHHHHHHHHHHH
T ss_pred             CeeCCCCCCCCcCCCHHHHHHHHHhcCCCCC-cCCCCCCCCCccCCHHHHHHHHHHcC
Confidence            467888  99999999999999999999887 9997  69999999999999998774

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.53  E-value=3e-15  Score=52.96  Aligned_cols=37  Identities=27%  Similarity=0.575  Sum_probs=34.0

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPY   38 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~   38 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|.+|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C~k   48 (48)
T 2epr_A           12 QVACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPSSG   48 (48)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCC-CCSCCCCC
T ss_pred             CeeCCCCCcccCCHHHHHHHHHhcCCCCC-ccCCCCCC
Confidence            57899999999999999999999999888 99999985

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.52  E-value=3.7e-14  Score=61.63  Aligned_cols=53  Identities=25%  Similarity=0.521  Sum_probs=38.6

Q ss_pred             CCCC--ccccccccchhhHHhHHHHHhCCCCCccC--CCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMC--DVCGKGYKYKNGIYRHKKFECGQEPKYQC--PQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c--~~c~~~~~~~~~~~~~~~~~~~~~~~~~c--~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +|.|  ..|++.|.....|..|+.+|.++++ |.|  ..|++.|.....|..|+++|+
T Consensus        12 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~   68 (190)
T 1tf6_A           12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKP-FPCKEEGCEKGFTSLHHLTRHSLTHT   68 (190)
T ss_dssp             CCBCSSTTTCCBCSSHHHHHHHHHHHHCCCS-SCCSSTTCCCCCSSHHHHHHHHTTTT
T ss_pred             ceeCCCCCCcchhCCHHHHHHHHHhcCCCCC-ccCCCCCCChhhCCHHHHHHHHHHcc
Confidence            3566  5677777777777777777777666 777  667777777777777777654

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.52  E-value=1.7e-14  Score=58.03  Aligned_cols=48  Identities=17%  Similarity=0.336  Sum_probs=44.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHH
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMA   51 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~   51 (55)
                      ||.|..|++.|.....|..|+.+|.  ++ |.|.+|++.|.....|..|++
T Consensus        16 ~~~C~~C~~~f~~~~~l~~H~~~H~--~~-~~C~~C~~~f~~~~~l~~H~~   63 (107)
T 1wjp_A           16 VYQCRLCNAKLSSLLEQGSHERLCR--NA-AVCPYCSLRFFSPELKQEHES   63 (107)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHH--HS-BCCTTTCCCBSSHHHHHHHHH
T ss_pred             CeECCCCCCccCCHHHHHHHHHHCC--CC-ccCCCCCCccCCHHHHHHHHH
Confidence            5899999999999999999999984  45 999999999999999999985

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.51  E-value=3.9e-14  Score=59.84  Aligned_cols=52  Identities=21%  Similarity=0.508  Sum_probs=33.6

Q ss_pred             CCCCcc--ccccccchhhHHhHHHHHhCCCCCccCCC--CCcccccchHHHHHH-Hhh
Q psy12023          1 MFMCDV--CGKGYKYKNGIYRHKKFECGQEPKYQCPQ--CPYRAKQNAHLTTHM-AIK   53 (55)
Q Consensus         1 p~~c~~--c~~~~~~~~~~~~~~~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~-~~~   53 (55)
                      ||.|..  |++.|.....|..|+.+|.++++ |.|+.  |++.|...+.|..|+ ++|
T Consensus        67 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~L~~H~~~~H  123 (155)
T 2gli_A           67 PHKCTFEGCRKSYSRLENLKTHLRSHTGEKP-YMCEHEGCSKAFSNASDRAKHQNRTH  123 (155)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHTTTCCC-EECCSTTCCCEESSSSTTHHHHHHTT
T ss_pred             CccCCCCCCCCcccCHHHHHHHHHHcCCCCC-eeCCCCCCCCccCCHHHHHHHHHHhc
Confidence            355653  66667666666677666666655 66766  777776666666666 443

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.50  E-value=4.4e-14  Score=56.08  Aligned_cols=53  Identities=28%  Similarity=0.651  Sum_probs=47.9

Q ss_pred             CCCCcc--ccccccchhhHHhHHHHHhCCCCCccCC--CCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDV--CGKGYKYKNGIYRHKKFECGQEPKYQCP--QCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~--c~~~~~~~~~~~~~~~~~~~~~~~~~c~--~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +|.|..  |++.|.....|..|+..|.++++ |.|.  .|++.|.....|..|+++|+
T Consensus        15 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~   71 (100)
T 2ebt_A           15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKP-YKCTWEGCDWRFARSDELTRHYRKHT   71 (100)
T ss_dssp             CEECCSSSCCCEESCHHHHHHHHHHHSCCCC-EECCSSSCCCEESSHHHHHHHHHHHT
T ss_pred             ceEcCCCCCCCcccCHHHHHHHHHHhCCCCC-eeCCCCCCCCccCCHHHHHHHHHHhC
Confidence            356875  99999999999999999999888 9996  69999999999999998875

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=6.4e-14  Score=49.03  Aligned_cols=35  Identities=23%  Similarity=0.510  Sum_probs=26.2

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|...+.|..|+.+|.++++ |.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2ytm_A           12 PYKCMECGKAFGDNSSCTQHQRLHTGQRP-SGPSSG   46 (46)
T ss_dssp             SSSBTTTTBCCSSHHHHHHHHHHHHSCCC-CCCCCC
T ss_pred             CcCCCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            56777777777777777777777777766 777765

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=3.8e-14  Score=54.30  Aligned_cols=40  Identities=25%  Similarity=0.576  Sum_probs=37.1

Q ss_pred             CCCCcc--ccccccchhhHHhHHHHHhCCCCCccCCCCCcccc
Q psy12023          1 MFMCDV--CGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAK   41 (55)
Q Consensus         1 p~~c~~--c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~   41 (55)
                      ||.|..  |++.|.....|..|+.+|.++++ |.|.+|++.|.
T Consensus        38 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C~k~F~   79 (79)
T 2dlk_A           38 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICEFSGPSSG   79 (79)
T ss_dssp             CEECSCTTTCCEESSHHHHHHHHHHHHTSCC-CSCCSSSCCCC
T ss_pred             CeECCCCCCcCccCCHHHHHHHHHHhCCCCC-eeCCCCCCCCC
Confidence            578988  99999999999999999999888 99999999984

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.48  E-value=3.5e-14  Score=49.48  Aligned_cols=36  Identities=25%  Similarity=0.439  Sum_probs=30.7

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCP   37 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~   37 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|+.||
T Consensus        10 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~~-~~C~~cg   45 (45)
T 2epq_A           10 PYSCPVCGLRFKRKDRMSYHVRSHDGSVG-KSGPSSG   45 (45)
T ss_dssp             SSEETTTTEECSCHHHHHHHHHHHSCCCC-CCCCCCC
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHccCCCC-CCCcCCC
Confidence            57888899999888889999888888777 8888875

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.48  E-value=7.5e-14  Score=48.82  Aligned_cols=35  Identities=20%  Similarity=0.561  Sum_probs=23.2

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|...+.|..|+.+|+++++ |.|+.|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2emk_A           12 PYECKECGKAFSQTTHLIQHQRVHTGEKP-SGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSCHHHHHHHHHHHSSCCC-SSCCCC
T ss_pred             ceECCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            45666677777766667777666666665 666654

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.48  E-value=6.2e-14  Score=49.03  Aligned_cols=35  Identities=29%  Similarity=0.630  Sum_probs=21.2

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ely_A           12 PFKCVECGKGFSRRSALNVHHKLHTGEKP-SGPSSG   46 (46)
T ss_dssp             SBCCSSSCCCBSSTTHHHHHHHHHSCCSS-CSCCCC
T ss_pred             CcccCccCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            45566666666666666666666666555 666554

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=6.6e-14  Score=48.96  Aligned_cols=35  Identities=23%  Similarity=0.550  Sum_probs=24.9

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|.+|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2elz_A           12 PYKCEDCGKGYNRRLNLDMHQRVHMGEKT-SGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHGGGGGSCCC-CCSCCC
T ss_pred             CeeCcccCchhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            46677777777777777777777777666 777665

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=7.8e-14  Score=48.74  Aligned_cols=35  Identities=26%  Similarity=0.567  Sum_probs=23.6

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|...+.|..|+.+|+++++ |.|+.|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2eoq_A           12 PFKCDICGKSFCGRSRLNRHSMVHTAEKP-SGPSSG   46 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHHHTTCCCS-SSCCCC
T ss_pred             CcCCCcCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            46677777777777777777777766665 666654

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=4.9e-14  Score=49.28  Aligned_cols=35  Identities=23%  Similarity=0.557  Sum_probs=22.8

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|...+.|..|+.+|+++++ |.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ytn_A           12 PYKCNECGKVFTQNSHLARHRGIHTGEKP-SGPSSG   46 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHGGGTSCCCC-CSCCCC
T ss_pred             CeECCCCCCeeCCHHHHHHHhhhcCCCCC-CCCCCC
Confidence            45666666666666666666666666655 666654

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=9.2e-14  Score=48.52  Aligned_cols=35  Identities=23%  Similarity=0.506  Sum_probs=22.7

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|...+.|..|+.+|.++++ |.|+.|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eov_A           12 PYKCSDCGKSFTWKSRLRIHQKCHTGERH-SGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHHHHSCCSS-CCSCCC
T ss_pred             CccCCccChhhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            45666666666666666666666666655 666654

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.47  E-value=6.4e-14  Score=48.96  Aligned_cols=35  Identities=14%  Similarity=0.390  Sum_probs=22.8

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|...+.|..|+.+|+++++ |.|+.|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2em0_A           12 TWKCRECDMCFSQASSLRLHQNVHVGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHGGGGSSSSC-SCSSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHcCCCCC-cCCCCC
Confidence            45666666666666666666666666655 666654

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=7e-14  Score=48.82  Aligned_cols=35  Identities=20%  Similarity=0.621  Sum_probs=21.0

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|+.|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eq4_A           12 LYNCKECGKSFSRAPCLLKHERLHSGEKP-SGPSSG   46 (46)
T ss_dssp             CCCBTTTTBCCSCHHHHHHHHHHCCSSSC-CCCCCC
T ss_pred             CeECCCCCCccCchHHHHHHHHhcCCCCC-CCCCCC
Confidence            45566666666666666666666666555 666554

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=6e-14  Score=49.03  Aligned_cols=35  Identities=23%  Similarity=0.545  Sum_probs=21.8

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|...+.|..|+.+|.++++ |.|+.|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2emy_A           12 PYECHECGKAFSRKYQLISHQRTHAGEKP-SGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHTTSCC-SCSSCC
T ss_pred             CcCCCCCCcccCcHHHHHHHHHHcCCCCC-CCCCCC
Confidence            45566666666666666666666666555 666554

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=6e-14  Score=49.04  Aligned_cols=35  Identities=26%  Similarity=0.709  Sum_probs=22.0

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|...+.|..|+.+|.++++ |.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2emh_A           12 PYICTVCGKAFTDRSNLIKHQKIHTGEKP-SGPSSG   46 (46)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHHHHCSSC-SSSCCC
T ss_pred             CcCCCCCCchhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            35566666666666666666666666555 666554

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=6.3e-14  Score=48.58  Aligned_cols=35  Identities=20%  Similarity=0.398  Sum_probs=24.6

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|...+.|..|+.+|.++++ |.|++|
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   44 (44)
T 2emx_A           10 PFGCSCCEKAFSSKSYLLVHQQTHAEEKP-SGPSSG   44 (44)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHHHTSSCS-CSCCCC
T ss_pred             CccCCCCCcccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            46677777777777777777777777666 777655

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=6.6e-14  Score=48.96  Aligned_cols=35  Identities=17%  Similarity=0.343  Sum_probs=21.2

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|+.|++.|...+.|..|+.+|+++++ |.|+.|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2eoo_A           12 PYGCNECGKNFGRHSHLIEHLKRHFREKS-SGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHSTTS-SCCSCC
T ss_pred             CEEccccCcccCCHHHHHHHHHHHcCCCC-CCCCCC
Confidence            35566666666666666666666666555 666544

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=7e-14  Score=48.86  Aligned_cols=35  Identities=23%  Similarity=0.581  Sum_probs=23.0

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|...+.|..|+.+|+++++ |.|+.|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2emp_A           12 PYMCNECGKAFSVYSSLTTHQVIHTGEKP-SGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESCHHHHHHHHHHHHCCSC-CSCCCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            45666667777666666667666666665 666654

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=7.9e-14  Score=48.76  Aligned_cols=35  Identities=26%  Similarity=0.493  Sum_probs=24.5

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2em8_A           12 PYKCVECGKGYKRRLDLDFHQRVHTGEKL-SGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHHHCCCC-CCSCCC
T ss_pred             CeECcccCchhCCHHHHHHHHHHHcCCCC-CCCCCC
Confidence            45677777777777777777777777666 777655

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=6.3e-14  Score=48.94  Aligned_cols=35  Identities=20%  Similarity=0.512  Sum_probs=21.2

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|...+.|..|+.+|.++++ |.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2emm_A           12 PHKCNECGKSFIQSAHLIQHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHHSCCCT-TSSSCC
T ss_pred             CeeCCCCChhhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            35566666666666666666666666555 666554

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=7.8e-14  Score=48.77  Aligned_cols=35  Identities=17%  Similarity=0.335  Sum_probs=25.7

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ytt_A           12 PYQCSECGKSFSGSYRLTQHWITHTREKP-SGPSSG   46 (46)
T ss_dssp             TTCCSSSCCCCSSHHHHHHHHTHHHHCCC-CSCCCC
T ss_pred             CeeCCCCCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            46777777777777777777777777666 777665

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=7.4e-14  Score=48.80  Aligned_cols=35  Identities=26%  Similarity=0.571  Sum_probs=20.2

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|+.|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2epz_A           12 PFDCIDCGKAFSDHIGLNQHRRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHTTTTTCCC-CSSCCC
T ss_pred             CeECCCCCceeCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            35556666666666666666666655555 555544

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=7.1e-14  Score=48.84  Aligned_cols=35  Identities=20%  Similarity=0.538  Sum_probs=23.0

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|+.|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2ytd_A           12 PYKCSECGKAFHRHTHLNEHRRIHTGYRP-SGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHHTCCCS-SCSSCC
T ss_pred             CeECCCCCCeeCChHHHHHHHHHcCCCCC-CCCCCC
Confidence            45666677777666666667666666665 666654

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=6.4e-14  Score=48.96  Aligned_cols=35  Identities=20%  Similarity=0.495  Sum_probs=22.1

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|...+.|..|+.+|+++++ |.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~c   46 (46)
T 2ytk_A           12 PYKCNECGKVFTQNSHLTNHWRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHHSSSSC-SSCCCC
T ss_pred             CEeCCcCCCccCCHHHHHHHHHHHCCCCC-CCCCCC
Confidence            35566666666666666666666666555 666554

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=4.2e-15  Score=60.42  Aligned_cols=54  Identities=15%  Similarity=0.174  Sum_probs=46.2

Q ss_pred             CCCCccccccccchhhHHhHHHH--HhCCCCCccCCCCCccc--ccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKF--ECGQEPKYQCPQCPYRA--KQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~--~~~~~~~~~c~~c~~~f--~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|.....|..|+.+  +.++++.+.|..|++.|  .....|..|+++|.
T Consensus        19 ~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~   76 (115)
T 2dmi_A           19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED   76 (115)
T ss_dssp             SEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCC
T ss_pred             CEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccC
Confidence            57899999999999999999998  77767645699999998  88888988887764

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=6.7e-14  Score=48.94  Aligned_cols=35  Identities=23%  Similarity=0.472  Sum_probs=19.8

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|...+.|..|+.+|+++++ |.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ytq_A           12 PYGCSECGKAFSSKSYLIIHMRTHSGEKP-SGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSCHHHHHHHHTTTCCSCS-SCCCCC
T ss_pred             CcCCCccChhhCChHHHHHHHHHhCCCCC-CCCCCC
Confidence            35555556556555555555555555554 555544

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=8.3e-14  Score=48.64  Aligned_cols=35  Identities=23%  Similarity=0.614  Sum_probs=19.8

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|.+|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2ytr_A           12 PYKCNECGKAFSQTSKLARHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             TTCCTTTCCCCSSHHHHHHHHTTTTTCSC-CCSCCC
T ss_pred             CcCCCCCCCccCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            35555566666555555555555555554 555544

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=7.9e-14  Score=48.69  Aligned_cols=35  Identities=20%  Similarity=0.554  Sum_probs=19.7

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|+.|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2eop_A           12 PHECRECGKSFSFNSQLIVHQRIHTGENP-SGPSSG   46 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHTTTTTSCC-SCCCCC
T ss_pred             CeeCCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            35555555555555555555555555554 555544

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=6.8e-14  Score=48.90  Aligned_cols=35  Identities=23%  Similarity=0.559  Sum_probs=22.6

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|...+.|..|+.+|.++++ |.|+.|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2yu8_A           12 PYKCNECGKVFTQNSHLARHRRVHTGGKP-SGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHTHHHHSCCC-SCSCCC
T ss_pred             CeECCcCCchhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            45666666666666666666666666655 666654

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.45  E-value=6.3e-14  Score=48.99  Aligned_cols=35  Identities=23%  Similarity=0.568  Sum_probs=19.5

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|...+.|..|+.+|.++++ |.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2ema_A           12 RYKCNECGKVFSRNSQLSQHQKIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHTGGGCCCC-CSSSCC
T ss_pred             CcCCCCCcchhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            34555555555555555555555555554 555543

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=8e-14  Score=48.70  Aligned_cols=35  Identities=17%  Similarity=0.285  Sum_probs=21.0

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|...+.|..|+.+|+++++ |.|..|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2yso_A           12 SHQCRECGEIFFQYVSLIEHQVLHMGQKN-SGPSSG   46 (46)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHSCCSC-CCTTCC
T ss_pred             CEEccccChhhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            35566666666666666666666666555 666544

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=5.9e-14  Score=49.06  Aligned_cols=35  Identities=26%  Similarity=0.690  Sum_probs=21.7

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2em7_A           12 PYKCEECGKGFICRRDLYTHHMVHTGEKP-SGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESCHHHHHHHGGGGTTCCC-SSTTCC
T ss_pred             CccCCCccchhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            35566666666666666666666666555 666554

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=5.9e-14  Score=49.03  Aligned_cols=35  Identities=20%  Similarity=0.509  Sum_probs=20.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|...+.|..|+.+|.++++ |.|+.|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eoe_A           12 PYKCNECGKVFTQNSHLANHQRIHTGVKP-SGPSSG   46 (46)
T ss_dssp             SSEETTTTEECSSHHHHHHHHGGGSCCCS-CSSCCC
T ss_pred             CeECCCcChhhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            35566666666666666666666665555 665544

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=6e-14  Score=49.03  Aligned_cols=34  Identities=24%  Similarity=0.631  Sum_probs=18.8

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      |.|..|++.|...+.|..|+.+|+++++ |.|++|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2ep2_A           13 YECSICGKSFTKKSQLHVHQQIHTGEKP-SGPSSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHHTTSSCCS-CCSCCC
T ss_pred             cCCCCCCcccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            4555555555555555555555555554 555543

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=7.1e-14  Score=48.85  Aligned_cols=34  Identities=24%  Similarity=0.659  Sum_probs=17.9

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      |.|..|++.|...+.|..|+.+|.++++ |.|++|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eml_A           13 YECSVCGKAFSHRQSLSVHQRIHSGKKP-SGPSSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHGGGSSCCC-SCSSCC
T ss_pred             eeCCCcCCccCCHHHHHHHHHHhcCCCC-CCCCCC
Confidence            4455555555555555555555555444 555443

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=7.1e-14  Score=48.85  Aligned_cols=35  Identities=23%  Similarity=0.498  Sum_probs=22.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|...+.|..|+.+|.++++ |.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2en6_A           12 PYGCNECGKTFSQKSILSAHQRTHTGEKP-SGPSSG   46 (46)
T ss_dssp             CEEETTTTEEESSHHHHHHHHHHHSSCCC-SSSCCC
T ss_pred             CeECCCCCcccCchHHHHHHHHHcCCCCC-CCCCCC
Confidence            45566666666666666666666666655 666654

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.44  E-value=5.2e-14  Score=49.17  Aligned_cols=35  Identities=20%  Similarity=0.439  Sum_probs=20.0

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|...+.|..|+.+|+++++ |.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2el4_A           12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKP-SGPSSG   46 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHGGGSSSCCC-SCCTTC
T ss_pred             ceECCCCCchhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            34555666666666666666666655555 555544

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=7.2e-14  Score=48.84  Aligned_cols=35  Identities=29%  Similarity=0.660  Sum_probs=19.8

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|...+.|..|+.+|+++++ |.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2enc_A           12 PFKCEECGKGFYTNSQCYSHQRSHSGEKP-SGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHSCCSSC-CSSCCC
T ss_pred             CcCCCCCCCcCCChHHHHHHHHHhCCCCC-CCCCCC
Confidence            34555566666655556666555555554 555544

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=5.9e-14  Score=49.08  Aligned_cols=34  Identities=29%  Similarity=0.621  Sum_probs=18.1

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      |.|..|++.|.....|..|+.+|.++++ |.|++|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2emf_A           13 FECTECGKAFTRKSTLSMHQKIHTGEKP-SGPSSG   46 (46)
T ss_dssp             EECSSSCCEESCHHHHHHHGGGTSCSSC-SCCCCC
T ss_pred             eECCCCCchhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            4555555555555555555555555444 555443

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.43  E-value=7.7e-14  Score=48.78  Aligned_cols=34  Identities=18%  Similarity=0.427  Sum_probs=19.3

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      |.|..|++.|.....|..|+.+|+++++ |.|.+|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2el6_A           13 YKCSQCEKSFSGKLRLLVHQRMHTREKP-SGPSSG   46 (46)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGGCCSSC-CSCCCC
T ss_pred             eECCCCCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            4555556555555555555555555554 555544

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=5.4e-14  Score=49.15  Aligned_cols=33  Identities=24%  Similarity=0.619  Sum_probs=16.1

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ   35 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~   35 (55)
                      |.|..|++.|...+.|..|+.+|.++++ |.|++
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eq0_A           13 YKCHECGKVFRRNSHLARHQLIHTGEKP-SGPSS   45 (46)
T ss_dssp             EECTTTCCEESSHHHHHHHHTTTCCCCC-SCCSC
T ss_pred             eECCCCCchhCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            4444555555555555555555544444 44444

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.43  E-value=8.8e-14  Score=48.58  Aligned_cols=35  Identities=20%  Similarity=0.655  Sum_probs=21.5

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2em9_A           12 PYNCKECGKSFRWASCLLKHQRVHSGEKP-SGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHGGGGTSCCC-CSTTCC
T ss_pred             CeECCccccccCChHHHHHHHHHhCCCCC-CCCCCC
Confidence            35566666666666666666666666555 666554

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=8e-14  Score=48.68  Aligned_cols=33  Identities=18%  Similarity=0.437  Sum_probs=16.2

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ   35 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~   35 (55)
                      |.|..|++.|...+.|..|+.+|.++++ |.|+.
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2epw_A           13 CKCTECGKAFCWKSQLIMHQRTHVDDKH-SGPSS   45 (46)
T ss_dssp             EECSSSCCEESSSHHHHHHHHHCCSCCC-SCCCC
T ss_pred             eeCCCCCCccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            4445555555555555555555544444 44444

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=9.7e-14  Score=48.49  Aligned_cols=31  Identities=26%  Similarity=0.548  Sum_probs=14.8

Q ss_pred             HHHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         22 KFECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        22 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      .+|+++++ |.|..|++.|...+.|..|+++|
T Consensus         5 ~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ytj_A            5 SSGTGEKP-YICAECGKAFTIRSNLIKHQKIH   35 (46)
T ss_dssp             CTTSSCCS-EECSSSCCEESSHHHHHHHHHHT
T ss_pred             cCCCCCcC-eECCCCChhhCCHHHHHHHHHHc
Confidence            33444444 55555555555555555554443

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=5.9e-14  Score=49.08  Aligned_cols=34  Identities=24%  Similarity=0.666  Sum_probs=18.8

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      |.|..|++.|...+.|..|+.+|.++++ |.|++|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2em5_A           13 HQCHECGRGFTLKSHLNQHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHTTTSCSCC-SSCCCC
T ss_pred             eECCcCCCccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            4555555555555555555555555554 555544

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=6.3e-14  Score=48.98  Aligned_cols=34  Identities=24%  Similarity=0.620  Sum_probs=18.1

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      |.|..|++.|...+.|..|+.+|+++++ |.|++|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ene_A           13 YKCNECGKVFRHNSYLSRHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHTTTCCCCC-CSCCCC
T ss_pred             eECCCCCchhCChHHHHHHHhhcCCCCC-CCCCCC
Confidence            4455555555555555555555555444 555443

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=9.8e-14  Score=48.45  Aligned_cols=34  Identities=26%  Similarity=0.724  Sum_probs=16.8

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      |.|..|++.|.....|..|+.+|.++++ |.|++|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eme_A           13 YVCDYCGKAFGLSAELVRHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHGGGCCCSC-CSSCCC
T ss_pred             eECCCCChhhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            4455555555555555555555554444 554443

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=6.5e-14  Score=48.95  Aligned_cols=35  Identities=26%  Similarity=0.599  Sum_probs=20.2

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|...+.|..|+.+|.++++ |.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ytg_A           12 PFKCGECGKSYNQRVHLTQHQRVHTGEKP-SGPSSG   46 (46)
T ss_dssp             SEECTTTCCEESSSHHHHTTGGGGSSCCS-SCSCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            34555666666666666666666655555 555544

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=1.8e-13  Score=47.89  Aligned_cols=35  Identities=23%  Similarity=0.553  Sum_probs=20.2

Q ss_pred             CCCCccccccccchhhHHhHHH-HHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKK-FECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~-~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|...+.|..|+. +|+++++ |.|+.|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~-~~C~~C   47 (47)
T 2epx_A           12 PYECIECGKAFIQNTSLIRHWRYYHTGEKP-SGPSSG   47 (47)
T ss_dssp             SBCCSSSCCCBSSHHHHHHHHTTTTTTSCS-SSCCCC
T ss_pred             CEECCccCchhCChHHHHHHhHhhcCCCCC-CCCCCC
Confidence            3556666666666666666665 5555554 555544

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=1.1e-13  Score=48.37  Aligned_cols=34  Identities=26%  Similarity=0.711  Sum_probs=19.0

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      |.|..|++.|.....|..|+.+|.++++ |.|++|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ep0_A           13 YKCDVCHKSFRYGSSLTVHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHTTTSSSCC-CSCCCC
T ss_pred             eeCcccCcccCChHHHHHHHHHhCCCCC-CCCCCC
Confidence            4555555555555555555555555554 555544

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=9.7e-14  Score=48.46  Aligned_cols=33  Identities=24%  Similarity=0.547  Sum_probs=16.4

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ   35 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~   35 (55)
                      |.|..|++.|...+.|..|+.+|+++++ |.|+.
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2en8_A           13 HTCDECGKNFCYISALRIHQRVHMGEKC-SGPSS   45 (46)
T ss_dssp             EECTTTCCEESSHHHHHHHHTTTCCSCS-SCCSC
T ss_pred             eECCCcCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            4455555555555555555555554444 55444

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.40  E-value=1e-13  Score=46.37  Aligned_cols=34  Identities=26%  Similarity=0.561  Sum_probs=30.1

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+++|+++++ |.|+.|++.|...+.|..|+++|.
T Consensus         2 H~~~h~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A            2 STRGSTGIKP-FQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSS-BCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCcCCCCCC-ccCCCCCcccCcHHHHHHHHHHhc
Confidence            4567888887 999999999999999999999875

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=1.1e-13  Score=48.35  Aligned_cols=34  Identities=24%  Similarity=0.615  Sum_probs=17.5

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      |.|..|++.|...+.|..|+.+|+++++ |.|+.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2en1_A           13 FKCEECGKRFTQNSQLHSHQRVHTGEKP-SGPSSG   46 (46)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGGSCCCC-SCCCCC
T ss_pred             eeCCCCCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            4455555555555555555555555444 555443

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=6.7e-13  Score=45.80  Aligned_cols=33  Identities=15%  Similarity=0.364  Sum_probs=22.1

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP   34 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~   34 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|+
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   42 (43)
T 2yrm_A           10 AFFCNECDCRFSEEASLKRHTLQTHSDKS-GPSS   42 (43)
T ss_dssp             CBCCSSSCCCBSSHHHHHHHHHHHTCTTC-SSSC
T ss_pred             CEECCCCCCeeCChHHHHHHHHhhCCCCC-ccCC
Confidence            46666777777777777777777766665 6664

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=7.9e-14  Score=48.73  Aligned_cols=34  Identities=32%  Similarity=0.679  Sum_probs=16.6

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      |.|..|++.|.....|..|+.+|.++++ |.|++|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2ysp_A           13 YKCEKCGKGYNSKFNLDMHQKVHTGERP-SGPSSG   46 (46)
T ss_dssp             EEETTTTEEESCHHHHHHHHTTSCSCCS-SCCSCC
T ss_pred             eECCCCCCccCCHHHHHHHHHhhCCCCC-CCCCCC
Confidence            4445555555555555555555554444 544443

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=3.2e-13  Score=47.15  Aligned_cols=33  Identities=24%  Similarity=0.604  Sum_probs=17.6

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ   35 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~   35 (55)
                      |.|..|++.|.....|..|+.+|.++++ |.|++
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2em2_A           13 FKCKECGKAFRQNIHLASHLRIHTGEKP-SGPSS   45 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHCCCCS-SCSSC
T ss_pred             EECCcCCchhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            4555555555555555555555555444 55543

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=1.7e-13  Score=47.82  Aligned_cols=31  Identities=29%  Similarity=0.623  Sum_probs=15.1

Q ss_pred             HHHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         22 KFECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        22 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      .+|+++++ |.|..|++.|...+.|..|+++|
T Consensus         5 ~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ep3_A            5 SSGTGEKP-YRCAECGKAFTDRSNLFTHQKIH   35 (46)
T ss_dssp             SSSSCCCS-EECSSSCCEESSHHHHHHHHTTT
T ss_pred             CCCCCCCC-eECCCCCchhCCHHHHHHHHHHc
Confidence            33444444 55555555555555555554443

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.38  E-value=4.2e-15  Score=58.15  Aligned_cols=52  Identities=23%  Similarity=0.395  Sum_probs=47.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|.....|..|+.++.+ .+ +.|..|++.|.....|..|++..|
T Consensus        31 ~~~C~~C~k~f~~~~~L~~H~~~h~~-~~-~~c~~C~~~f~~~~~L~~H~~~~h   82 (88)
T 1llm_C           31 PFACDICGRKFARSDERKRHRDIQHI-LP-ILEDKVEELLSKNYHLENEVARLK   82 (88)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHTH-HH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHHHhCC-Cc-chHHHHHHHHHHHhhhHHHHHHHH
Confidence            58899999999999999999999886 55 999999999999999999988654

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=9.4e-13  Score=45.97  Aligned_cols=33  Identities=21%  Similarity=0.483  Sum_probs=22.0

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP   34 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~   34 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|+
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2eom_A           12 GHRCSDCGKFFLQASNFIQHRRIHTGEKP-SGPS   44 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHHHHSSCCC-SSCC
T ss_pred             CcCCCCCCCeeCChHHHHHHHHHhCCCCC-CCCC
Confidence            45666677777766667777666666665 6664

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.1e-12  Score=45.76  Aligned_cols=33  Identities=21%  Similarity=0.597  Sum_probs=18.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP   34 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~   34 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|+
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2en9_A           12 LFKCNECKKTFTQSSSLTVHQRIHTGEKP-SGPS   44 (46)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHTSSCC-CSCC
T ss_pred             CEECCccCcccCCHHHHHHHHHHcCCCCC-CCCC
Confidence            34555555555555555555555555554 5554

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.36  E-value=4.4e-14  Score=52.34  Aligned_cols=43  Identities=16%  Similarity=0.424  Sum_probs=36.7

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHH
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLT   47 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~   47 (55)
                      ||.|..|++.|.....|.   .+|.++++ |.|..|++.|....++.
T Consensus        14 ~~~C~~C~k~F~~~~~l~---~~H~~~k~-~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A           14 SFKCPVCSSTFTDLEANQ---LFDPMTGT-FRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             EEECSSSCCEEEHHHHHH---HEETTTTE-EBCSSSCCBCEECTTCS
T ss_pred             CccCCCCCchhccHHHhH---hhcCCCCC-EECCCCCCccccCcccc
Confidence            578999999999888775   78899887 99999999998876543

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=2.4e-13  Score=46.56  Aligned_cols=32  Identities=25%  Similarity=0.584  Sum_probs=20.1

Q ss_pred             HHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         22 KFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        22 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      .+|+++++ |.|++|++.|...+.|..|+++|.
T Consensus         3 ~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   34 (42)
T 2yte_A            3 SGSSGEKP-YSCAECKETFSDNNRLVQHQKMHT   34 (42)
T ss_dssp             SSSCSCCS-CBCTTTCCBCSSHHHHHHHHHHTS
T ss_pred             cCcCCCCC-eECCCCCCccCCHHHHHHHHHHhC
Confidence            34555555 666666666666666666666553

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1e-12  Score=45.79  Aligned_cols=32  Identities=25%  Similarity=0.709  Sum_probs=16.6

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP   34 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~   34 (55)
                      |.|..|++.|.....|..|+.+|.++++ |.|+
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2eq2_A           13 YQCNECGKAFSQTSKLARHQRVHTGEKP-SGPS   44 (46)
T ss_dssp             SSCCSSCCCCSSHHHHHHHGGGGCCCCC-CCCC
T ss_pred             eECCCCCcccCCHHHHHHHHHHcCCCCC-CCCC
Confidence            4555555555555555555555555444 5543

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.35  E-value=8.3e-13  Score=46.08  Aligned_cols=32  Identities=25%  Similarity=0.662  Sum_probs=15.6

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP   34 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~   34 (55)
                      |.|..|++.|.....|..|+.+|+++++ |.|+
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2emj_A           13 FECAECGKSFSISSQLATHQRIHTGEKP-SGPS   44 (46)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHHTTSCS-SSSC
T ss_pred             EECCCCCcccCCHHHHHHHHHHhCCCCC-CCCC
Confidence            4445555555555555555555544444 4443

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.3e-12  Score=45.54  Aligned_cols=32  Identities=25%  Similarity=0.613  Sum_probs=15.5

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP   34 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~   34 (55)
                      |.|..|++.|.....|..|+.+|.++++ |.|+
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2ep1_A           13 YECSDCGKSFIKKSQLHVHQRIHTGENP-SGPS   44 (46)
T ss_dssp             SCCSSSCCCCSSHHHHHHHHGGGSSSCC-CSSS
T ss_pred             cCCCCCCchhCCHHHHHHHHHHhCCCCC-CCCC
Confidence            4445555555555555555555444444 4443

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.2e-12  Score=45.63  Aligned_cols=33  Identities=24%  Similarity=0.627  Sum_probs=17.5

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP   34 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~   34 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2yth_A           12 PFQCEECGKRFTQNSHLHSHQRVHTGEKP-SGPS   44 (46)
T ss_dssp             SBCCSSSCCCBSSHHHHHHHGGGGTTCCC-SSCC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHhcCCCCC-CCCC
Confidence            34555555555555555555555555444 5543

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=8.4e-13  Score=46.07  Aligned_cols=32  Identities=28%  Similarity=0.641  Sum_probs=15.6

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP   34 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~   34 (55)
                      |.|..|++.|.....|..|+.+|+++++ |.|+
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2em4_A           13 YECIECGKAFKTKSSLICHRRSHTGEKP-SGPS   44 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHSSSSC-CCCC
T ss_pred             cCCCCCCCccCCHHHHHHHHHhcCCCCC-CCCC
Confidence            4445555555555555555555544444 4443

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.34  E-value=2.1e-13  Score=46.75  Aligned_cols=32  Identities=22%  Similarity=0.548  Sum_probs=21.2

Q ss_pred             HHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         22 KFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        22 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      .+|+++++ |.|++|++.|...+.|..|+++|.
T Consensus         3 ~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   34 (42)
T 2el5_A            3 SGSSGENP-YECSECGKAFNRKDQLISHQRTHA   34 (42)
T ss_dssp             SSSSSCCS-EECSSSCCEESSHHHHHHHHGGGC
T ss_pred             CCCCCCCC-ccCCCcChhhCCHHHHHHHHHhcC
Confidence            34556555 777777777777777777776654

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1e-12  Score=45.77  Aligned_cols=32  Identities=22%  Similarity=0.649  Sum_probs=16.9

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP   34 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~   34 (55)
                      |.|..|++.|.....|..|+.+|+++++ |.|+
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~kp-~~C~   44 (46)
T 2eor_A           13 YNCEECGKAFIHDSQLQEHQRIHTGEKP-SGPS   44 (46)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHHSCCC-SSST
T ss_pred             ccCCCCCCCcCCHHHHHHHHHhcCCCCC-CCCC
Confidence            4455555555555555555555555444 5543

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=9e-13  Score=45.95  Aligned_cols=30  Identities=37%  Similarity=0.722  Sum_probs=14.8

Q ss_pred             HHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         23 FECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        23 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      +|+++++ |.|..|++.|...+.|..|+++|
T Consensus         6 ~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2enf_A            6 SGTGEKP-YKCNECGKVFTQNSHLVRHRGIH   35 (46)
T ss_dssp             CCCCCCS-CBCSSSCCBCSSHHHHHHHHTTT
T ss_pred             CCCCCcC-eECCCCCcccCCHHHHHHHHHhh
Confidence            3444444 55555555555555555554443

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=9.4e-13  Score=45.91  Aligned_cols=30  Identities=37%  Similarity=0.729  Sum_probs=14.7

Q ss_pred             HHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         23 FECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        23 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      +|+++++ |.|+.|++.|...+.|..|+++|
T Consensus         6 ~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2yti_A            6 SGTGEKP-YKCNECGKVFTQNSHLARHRGIH   35 (46)
T ss_dssp             CCSCCCT-TCCSSSCCCCSSHHHHHHHHTTT
T ss_pred             CCCCCcC-eECCCCCcccCChhHHHHHhHhc
Confidence            3444444 55555555555555555554444

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1e-12  Score=45.84  Aligned_cols=30  Identities=33%  Similarity=0.667  Sum_probs=14.7

Q ss_pred             HHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         23 FECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        23 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      +|+++++ |.|.+|++.|...+.|..|+++|
T Consensus         6 ~H~~~~~-~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2em3_A            6 SGTGEKP-YECKVCSKAFTQKAHLAQHQKTH   35 (46)
T ss_dssp             CCSSCCS-EECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCCCCcC-eECCCCCcccCCHHHHHHHHHHh
Confidence            3444444 55555555555555555554444

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=2.1e-12  Score=44.63  Aligned_cols=30  Identities=17%  Similarity=0.367  Sum_probs=16.0

Q ss_pred             HHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         23 FECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        23 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      +|.++++ |.|.+|++.|...+.|..|+++|
T Consensus         6 ~h~~~~~-~~C~~C~k~f~~~~~L~~H~~~H   35 (44)
T 2eou_A            6 SGAAKTT-SECQECGKIFRHSSLLIEHQALH   35 (44)
T ss_dssp             SCSSSCC-CCCTTTCCCCSSHHHHHHHHHHH
T ss_pred             CCCCCcC-eECCCCCcccCCHHHHHHHHHHH
Confidence            3444444 55555555555555555555544

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1e-12  Score=45.84  Aligned_cols=30  Identities=23%  Similarity=0.544  Sum_probs=14.9

Q ss_pred             HHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         23 FECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        23 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      +|+++++ |.|.+|++.|...+.|..|+++|
T Consensus         6 ~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2emg_A            6 SGTGENP-FICSECGKVFTHKTNLIIHQKIH   35 (46)
T ss_dssp             CCCSCCS-CBCTTTCCBCSSHHHHHHHHTTT
T ss_pred             CCCCCCC-EECCccCcccCCHHHHHHHHHHh
Confidence            3444444 55555555555555555555444

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=2.2e-13  Score=47.16  Aligned_cols=34  Identities=21%  Similarity=0.436  Sum_probs=26.5

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|.+|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (44)
T 2yu5_A            3 SGSSGAGENP-FKCSKCDRVFTQRNYLVQHERTHA   36 (44)
T ss_dssp             CSCCCSCCCS-EECSSSSCEESSSHHHHHHHHHCC
T ss_pred             CccccCCCCC-eECCCCCchhCCHHHHHHHhHhcC
Confidence            4556777776 888888888888888888887764

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.1e-12  Score=45.65  Aligned_cols=30  Identities=27%  Similarity=0.607  Sum_probs=15.0

Q ss_pred             HHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         23 FECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        23 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      +|+++++ |.|..|++.|...+.|..|+++|
T Consensus         6 ~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eow_A            6 SGTGEKP-YKCNECGKAFRARSSLAIHQATH   35 (46)
T ss_dssp             CSCCCCC-EECTTSCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCC-eeccccCChhcCHHHHHHHHHHc
Confidence            3444444 55555555555555555555444

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.8e-13  Score=47.46  Aligned_cols=34  Identities=21%  Similarity=0.396  Sum_probs=27.2

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|.+|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~   36 (44)
T 2epv_A            3 SGSSGSGEKP-YECNECGKAFIWKSLLIVHERTHA   36 (44)
T ss_dssp             CCCCCCCCCS-EECSSSCCEESSHHHHHHHHGGGS
T ss_pred             CCcccCCCcC-eECCCCCcccCchHHHHHHHhHhc
Confidence            4556777777 888888888888888888888764

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1e-12  Score=45.88  Aligned_cols=30  Identities=27%  Similarity=0.664  Sum_probs=14.4

Q ss_pred             HHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         23 FECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        23 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      +|+++++ |.|.+|++.|.....|..|+++|
T Consensus         6 ~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eon_A            6 SGTGEKP-YKCQVCGKAFRVSSHLVQHHSVH   35 (46)
T ss_dssp             SCSSCCS-CBCSSSCCBCSSHHHHHHHTTTT
T ss_pred             CCCCCcc-cCCCCCCcccCcHHHHHHHHHhc
Confidence            3444444 55555555555555555554443

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.3e-12  Score=45.57  Aligned_cols=30  Identities=30%  Similarity=0.576  Sum_probs=14.3

Q ss_pred             HHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         23 FECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        23 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      +|.++++ |.|.+|++.|...+.|..|+++|
T Consensus         6 ~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2em6_A            6 SGMGEKC-YKCDVCGKEFSQSSHLQTHQRVH   35 (46)
T ss_dssp             CCCCCCC-CBCSSSCCBCSSHHHHHHHHTTT
T ss_pred             ccCCCCC-eECCCCCcccCCHHHHHHHHHHc
Confidence            3444444 55555555555555555554443

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=3.5e-13  Score=47.02  Aligned_cols=35  Identities=23%  Similarity=0.612  Sum_probs=32.5

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|...+.|..|+.+|.++++ |.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2ytj_A           12 PYICAECGKAFTIRSNLIKHQKIHTKQKP-SGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHTSCCCC-SSCSCC
T ss_pred             CeECCCCChhhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            57899999999999999999999999888 999876

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.32  E-value=2.9e-13  Score=47.29  Aligned_cols=34  Identities=26%  Similarity=0.588  Sum_probs=30.3

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|++|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2emk_A            3 SGSSGTGEKP-YECKECGKAFSQTTHLIQHQRVHT   36 (46)
T ss_dssp             CCCCCSSSCS-CBCSSSCCBCSCHHHHHHHHHHHS
T ss_pred             CCCccCCCCc-eECCCCCchhCCHHHHHHHHHHcC
Confidence            5667888887 999999999999999999999875

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.6e-13  Score=47.36  Aligned_cols=32  Identities=25%  Similarity=0.486  Sum_probs=18.9

Q ss_pred             HHHHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         21 KKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        21 ~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      +.+|+++++ |.|..|++.|...+.|..|+++|
T Consensus         4 ~~~H~~~~~-~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2emi_A            4 GSSGTGERH-YECSECGKAFIQKSTLSMHQRIH   35 (46)
T ss_dssp             CCSCSSCCC-EECSSSCCEESSHHHHHHHHGGG
T ss_pred             CcccCCCCC-CCCCCCCcccCCHHHHHHHHhHh
Confidence            344555555 66666666666666666666554

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.32  E-value=5.1e-13  Score=46.63  Aligned_cols=34  Identities=18%  Similarity=0.475  Sum_probs=30.3

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+++|+++++ |.|.+|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ely_A            3 SGSSGTGEKP-FKCVECGKGFSRRSALNVHHKLHT   36 (46)
T ss_dssp             CCCCCCCCCS-BCCSSSCCCBSSTTHHHHHHHHHS
T ss_pred             CCCCCCCCCC-cccCccCcccCCHHHHHHHHHHcC
Confidence            5567888887 999999999999999999999875

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.5e-12  Score=44.82  Aligned_cols=32  Identities=22%  Similarity=0.574  Sum_probs=16.5

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP   34 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~   34 (55)
                      |.|..|++.|.....|..|+.+|+++++ |.|+
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2emz_A           13 FKCNECGKGFGRRSHLAGHLRLHSREKS-SGPS   44 (46)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHHHTTC-CCSC
T ss_pred             eECCCCCcccCCHHHHHHHHHHhCCCCC-CCCC
Confidence            4455555555555555555555555444 5443

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.3e-13  Score=47.14  Aligned_cols=30  Identities=30%  Similarity=0.645  Sum_probs=15.1

Q ss_pred             HHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         23 FECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        23 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      +|+++++ |.|.+|++.|...+.|..|+++|
T Consensus         6 ~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eoh_A            6 SGSGKKP-YECKECRKTFIQIGHLNQHKRVH   35 (46)
T ss_dssp             SCCCSCS-CCCSSSCCCCSSHHHHHHHHHHC
T ss_pred             CcCCCCC-cCCCCcCchhCCHHHHHHHHHHh
Confidence            3444444 55555555555555555555444

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.8e-13  Score=47.29  Aligned_cols=34  Identities=24%  Similarity=0.512  Sum_probs=30.5

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|++|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eml_A            3 SGSSGTGEKP-YECSVCGKAFSHRQSLSVHQRIHS   36 (46)
T ss_dssp             CCCCCSSCCS-EECSSSCCEESSHHHHHHHHGGGS
T ss_pred             ccCCcCCCCC-eeCCCcCCccCCHHHHHHHHHHhc
Confidence            5667888887 999999999999999999999875

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.6e-12  Score=45.27  Aligned_cols=30  Identities=33%  Similarity=0.713  Sum_probs=15.1

Q ss_pred             HHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         23 FECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        23 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      +|+++++ |.|..|++.|...+.|..|+++|
T Consensus         6 ~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eq1_A            6 SGTGEKP-YKCNECGKAFRAHSNLTTHQVIH   35 (46)
T ss_dssp             CCCCSCC-CCCTTTTCCCSSHHHHHHHHTTT
T ss_pred             ccCCCCC-eECCcCChhhCCHHHHHHHHHHh
Confidence            3444444 55555555555555555555444

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.8e-13  Score=47.27  Aligned_cols=34  Identities=24%  Similarity=0.603  Sum_probs=31.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ   35 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~   35 (55)
                      ||.|..|++.|...+.|..|+.+|.++++ |.|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2enf_A           12 PYKCNECGKVFTQNSHLVRHRGIHTGEKP-SGPSS   45 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHTTTTTSSC-CCCSC
T ss_pred             CeECCCCCcccCCHHHHHHHHHhhCCCCC-CCCCC
Confidence            68999999999999999999999999888 99864

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.5e-12  Score=44.80  Aligned_cols=33  Identities=18%  Similarity=0.404  Sum_probs=30.9

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP   34 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~   34 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2eoh_A           12 PYECKECRKTFIQIGHLNQHKRVHTGERS-SGPS   44 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHHHCSSCCS-CSTT
T ss_pred             CcCCCCcCchhCCHHHHHHHHHHhCCCCC-CCCC
Confidence            68999999999999999999999999887 9986

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.6e-13  Score=46.95  Aligned_cols=35  Identities=23%  Similarity=0.516  Sum_probs=30.7

Q ss_pred             hHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         19 RHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        19 ~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      .|+.+|+++++ |.|+.|++.|...+.|..|+++|.
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ep1_A            2 SSGSSGTGEKP-YECSDCGKSFIKKSQLHVHQRIHT   36 (46)
T ss_dssp             CCCCCCSSCCS-SCCSSSCCCCSSHHHHHHHHGGGS
T ss_pred             ccccCCCCCCC-cCCCCCCchhCCHHHHHHHHHHhC
Confidence            35667888887 999999999999999999999875

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.4e-13  Score=46.62  Aligned_cols=34  Identities=21%  Similarity=0.504  Sum_probs=24.2

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|+.|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (44)
T 2eof_A            3 SGSSGTGEKP-YECNECQKAFNTKSNLMVHQRTHT   36 (44)
T ss_dssp             CSSCCSCCCS-EECTTTCCEESCHHHHHHHHHHTT
T ss_pred             CccCCCCCCC-eECCCCCcccCCHhHHHHHHHHhC
Confidence            4455666666 777777777777777777777664

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=9.1e-13  Score=45.98  Aligned_cols=32  Identities=22%  Similarity=0.470  Sum_probs=18.3

Q ss_pred             HHHHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         21 KKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        21 ~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      +.+|+++++ |.|..|++.|...+.|..|+++|
T Consensus         4 ~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2ytp_A            4 GSSGTGERH-YECSECGKAFARKSTLIMHQRIH   35 (46)
T ss_dssp             CCSSCCCCC-EECSSSCCEESSHHHHHHHHTTT
T ss_pred             ccCcCCCCC-eECCcCCcccCCHHHHHHHHHHh
Confidence            344555554 66666666666666666665554

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=4e-13  Score=46.84  Aligned_cols=34  Identities=21%  Similarity=0.453  Sum_probs=30.3

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|++|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eov_A            3 SGSSGTGEKP-YKCSDCGKSFTWKSRLRIHQKCHT   36 (46)
T ss_dssp             CCCCCSSCCS-CBCSSSCCBCSSHHHHHHHHHHHS
T ss_pred             CCCCCCCCCC-ccCCccChhhCCHHHHHHHHHhcC
Confidence            5667888887 999999999999999999999875

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.5e-13  Score=47.00  Aligned_cols=34  Identities=18%  Similarity=0.374  Sum_probs=30.4

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|+.|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eq4_A            3 SGSSGTGEKL-YNCKECGKSFSRAPCLLKHERLHS   36 (46)
T ss_dssp             CCCCSSCCCC-CCBTTTTBCCSCHHHHHHHHHHCC
T ss_pred             CcccCCCCCC-eECCCCCCccCchHHHHHHHHhcC
Confidence            5667888887 999999999999999999999875

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.9e-13  Score=47.23  Aligned_cols=34  Identities=26%  Similarity=0.578  Sum_probs=31.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ   35 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~   35 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2em3_A           12 PYECKVCSKAFTQKAHLAQHQKTHTGEKP-SGPSS   45 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHHCCCCC-CCSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            58899999999999999999999999888 99874

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.6e-12  Score=43.88  Aligned_cols=33  Identities=15%  Similarity=0.354  Sum_probs=30.3

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP   34 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~   34 (55)
                      ||.|..|++.|...+.|..|+.+|.++++ |.|.
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   42 (42)
T 2yte_A           10 PYSCAECKETFSDNNRLVQHQKMHTVKSG-PSSG   42 (42)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHHTSCCSS-CCCC
T ss_pred             CeECCCCCCccCCHHHHHHHHHHhCCCCC-CCCC
Confidence            68999999999999999999999999887 8873

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.6e-13  Score=47.41  Aligned_cols=34  Identities=24%  Similarity=0.616  Sum_probs=31.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ   35 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~   35 (55)
                      ||.|..|++.|...+.|..|+.+|+++++ |.|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2ytp_A           12 HYECSECGKAFARKSTLIMHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHTTTSCCCC-CSSCC
T ss_pred             CeECCcCCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            68899999999999999999999999888 99864

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.7e-13  Score=46.93  Aligned_cols=34  Identities=26%  Similarity=0.554  Sum_probs=30.4

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|++|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytr_A            3 SGSSGTGEKP-YKCNECGKAFSQTSKLARHQRIHT   36 (46)
T ss_dssp             SSCCCSSCCT-TCCTTTCCCCSSHHHHHHHHTTTT
T ss_pred             CCcCCCCCcC-cCCCCCCCccCCHHHHHHHHHhcC
Confidence            5667888887 999999999999999999999875

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.30  E-value=3.5e-13  Score=47.04  Aligned_cols=34  Identities=24%  Similarity=0.496  Sum_probs=30.4

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|..|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ema_A            3 SGSSGTGEKR-YKCNECGKVFSRNSQLSQHQKIHT   36 (46)
T ss_dssp             SCSSCTTSCC-EECSSSCCEESSHHHHHHHHTGGG
T ss_pred             CccCCCCCcC-cCCCCCcchhCCHHHHHHHHHhcC
Confidence            5667888888 999999999999999999999875

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=3.8e-13  Score=46.54  Aligned_cols=33  Identities=18%  Similarity=0.392  Sum_probs=29.3

Q ss_pred             HHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         21 KKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        21 ~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +.+|+++++ |.|+.|++.|...+.|..|+++|.
T Consensus         2 ~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   34 (44)
T 2emx_A            2 SSGSSGEKP-FGCSCCEKAFSSKSYLLVHQQTHA   34 (44)
T ss_dssp             CCCCSSCCC-EECSSSSCEESSHHHHHHHHHHHT
T ss_pred             CCCcCCCcC-ccCCCCCcccCCHHHHHHHHHHhC
Confidence            456788887 999999999999999999999875

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.3e-13  Score=46.62  Aligned_cols=34  Identities=21%  Similarity=0.418  Sum_probs=23.4

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|.+|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (44)
T 2en7_A            3 SGSSGTGMKP-YVCNECGKAFRSKSYLIIHTRTHT   36 (44)
T ss_dssp             SCCCSSSSSS-SCCTTTCCCCSSHHHHHHHHTTTC
T ss_pred             CCcCCCCCcC-eECCCCCCccCCHHHHHHHhhhcC
Confidence            4455666666 777777777777777777776654

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.7e-12  Score=45.24  Aligned_cols=30  Identities=30%  Similarity=0.630  Sum_probs=16.3

Q ss_pred             HHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         23 FECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        23 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      +|+++++ |.|.+|++.|.....|..|+++|
T Consensus         6 ~h~~~k~-~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2enh_A            6 SGTGEKP-YECDVCRKAFSHHASLTQHQRVH   35 (46)
T ss_dssp             CCCCSSS-CBCTTTCCBCSSSHHHHHHGGGS
T ss_pred             CcCCCCC-cCCCCcCchhCCHHHHHHHHHHh
Confidence            3444444 55555555555555555555544

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.7e-13  Score=46.93  Aligned_cols=34  Identities=24%  Similarity=0.438  Sum_probs=30.2

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|..|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eop_A            3 SGSSGTGEKP-HECRECGKSFSFNSQLIVHQRIHT   36 (46)
T ss_dssp             CCCSCCCCCS-CBCTTTCCBCSSHHHHHHHHTTTT
T ss_pred             CccccCCCCC-eeCCCCCchhCCHHHHHHHHHHcC
Confidence            5667888887 999999999999999999998875

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=99.30  E-value=4.6e-12  Score=41.44  Aligned_cols=31  Identities=16%  Similarity=0.294  Sum_probs=25.6

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCcc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQ   32 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~   32 (55)
                      ||.|..|++.|...+.|..|+.+|+++++ |.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~   32 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGE-ER   32 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCC-CC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCC-CC
Confidence            67888888888888888888888888776 53

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2e-13  Score=47.69  Aligned_cols=32  Identities=28%  Similarity=0.588  Sum_probs=17.1

Q ss_pred             HHHHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         21 KKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        21 ~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      +.+|+++++ |.|..|++.|...+.|..|+++|
T Consensus         4 ~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eoz_A            4 GSSGTGEKP-YSCNVCGKAFVLSAHLNQHLRVH   35 (46)
T ss_dssp             CCCCSSCCS-EEETTTTEEESSHHHHHHHHHHH
T ss_pred             cccCCCCCC-eECcccChhhCCHHHHHHHHHHh
Confidence            334445444 55555555555555555555544

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.1e-12  Score=45.68  Aligned_cols=31  Identities=32%  Similarity=0.621  Sum_probs=15.7

Q ss_pred             HHHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         22 KFECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        22 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      .+|+++++ |.|+.|++.|...+.|..|+++|
T Consensus         5 ~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2yts_A            5 SSGTGEKP-YICNECGKSFIQKSHLNRHRRIH   35 (46)
T ss_dssp             CCCCSCCS-EECSSSCCEESSHHHHHHHGGGT
T ss_pred             CCCCCCcC-EECCCCChhhCChHHHHHHHHhc
Confidence            34444444 55555555555555555555444

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.4e-13  Score=47.02  Aligned_cols=34  Identities=29%  Similarity=0.490  Sum_probs=30.4

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|..|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2emm_A            3 SGSSGTGERP-HKCNECGKSFIQSAHLIQHQRIHT   36 (46)
T ss_dssp             CCSCSSCCCS-EECSSSCCEESSHHHHHHHHHHHS
T ss_pred             CcCCcCCCCC-eeCCCCChhhCCHHHHHHHHHHhC
Confidence            5667888887 999999999999999999999875

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.2e-13  Score=47.12  Aligned_cols=34  Identities=26%  Similarity=0.530  Sum_probs=30.3

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|..|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eq2_A            3 SGSSGTGGKP-YQCNECGKAFSQTSKLARHQRVHT   36 (46)
T ss_dssp             CCCSSSSSCS-SSCCSSCCCCSSHHHHHHHGGGGC
T ss_pred             cccccCCCCC-eECCCCCcccCCHHHHHHHHHHcC
Confidence            5567888887 999999999999999999998875

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.3e-13  Score=47.54  Aligned_cols=35  Identities=23%  Similarity=0.523  Sum_probs=30.7

Q ss_pred             hHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         19 RHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        19 ~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      .|+.+|+++++ |.|+.|++.|...+.|..|+++|.
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2eoo_A            2 SSGSSGSGERP-YGCNECGKNFGRHSHLIEHLKRHF   36 (46)
T ss_dssp             CCCCCCSCCCC-EECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCC-EEccccCcccCCHHHHHHHHHHHc
Confidence            35667888888 999999999999999999998874

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.4e-13  Score=47.06  Aligned_cols=34  Identities=24%  Similarity=0.593  Sum_probs=31.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ   35 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~   35 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2yti_A           12 PYKCNECGKVFTQNSHLARHRGIHTGEKP-SGPSS   45 (46)
T ss_dssp             TTCCSSSCCCCSSHHHHHHHHTTTSCSCC-SSTTC
T ss_pred             CeECCCCCcccCChhHHHHHhHhcCCCCC-CCCCC
Confidence            68999999999999999999999999888 99864

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.2e-13  Score=47.12  Aligned_cols=34  Identities=32%  Similarity=0.627  Sum_probs=30.2

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|+.|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2ytn_A            3 SGSSGTGKKP-YKCNECGKVFTQNSHLARHRGIHT   36 (46)
T ss_dssp             CCCCCSCCSS-CBCTTTCCBCSSHHHHHHHGGGTS
T ss_pred             CCcCCCCCcC-eECCCCCCeeCCHHHHHHHhhhcC
Confidence            5567888887 999999999999999999998875

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.30  E-value=3.1e-13  Score=47.20  Aligned_cols=34  Identities=24%  Similarity=0.536  Sum_probs=30.3

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|.+|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2emj_A            3 SGSSGTGEKP-FECAECGKSFSISSQLATHQRIHT   36 (46)
T ss_dssp             CCCCCCCCCS-EECSSSSCEESSHHHHHHHHHHHT
T ss_pred             CCCCCCCCCC-EECCCCCcccCCHHHHHHHHHHhC
Confidence            5567888887 999999999999999999999875

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.9e-13  Score=47.24  Aligned_cols=35  Identities=23%  Similarity=0.643  Sum_probs=32.2

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|...+.|..|+.+|+++++ |.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~~   46 (46)
T 2ep3_A           12 PYRCAECGKAFTDRSNLFTHQKIHTGEKP-SGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHTTTTTSCC-CCTTCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            57899999999999999999999999888 999864

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=4e-13  Score=46.89  Aligned_cols=34  Identities=29%  Similarity=0.633  Sum_probs=31.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ   35 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~   35 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2emg_A           12 PFICSECGKVFTHKTNLIIHQKIHTGERP-SGPSS   45 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHTTTSCCCC-SCSCC
T ss_pred             CEECCccCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            68999999999999999999999999888 99874

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.30  E-value=3.1e-13  Score=47.17  Aligned_cols=34  Identities=18%  Similarity=0.395  Sum_probs=30.3

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|++|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2em0_A            3 SGSSGMGEKT-WKCRECDMCFSQASSLRLHQNVHV   36 (46)
T ss_dssp             CCCCSCCCCC-CCCSSSCCCCSSHHHHHHHGGGGS
T ss_pred             CcCccCCCcC-eECCCCCcccCCHHHHHHHHHHcC
Confidence            5667888888 999999999999999999998875

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1e-12  Score=45.79  Aligned_cols=31  Identities=19%  Similarity=0.554  Sum_probs=17.3

Q ss_pred             HHHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         22 KFECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        22 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      .+|+++++ |.|..|++.|...+.|..|+++|
T Consensus         5 ~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ytf_A            5 SSGTGEKP-FECSECQKAFNTKSNLIVHQRTH   35 (46)
T ss_dssp             CSSCCCCS-EECSSSCCEESSHHHHHHHHHTS
T ss_pred             CCCCCCCC-cCCCCCCcccCCHHHHHHHHHHh
Confidence            34455444 56656666666555565555554

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.4e-13  Score=47.09  Aligned_cols=32  Identities=22%  Similarity=0.499  Sum_probs=17.2

Q ss_pred             HHHHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         21 KKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        21 ~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      +.+|+++++ |.|.+|++.|...+.|..|+++|
T Consensus         4 ~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2yto_A            4 GSSGTGEKP-YKCSDCGKAFTRKSGLHIHQQSH   35 (46)
T ss_dssp             CCCCCSCCC-EECSSSCCEESSHHHHHHHHHHH
T ss_pred             ccccCCCCC-EECcccCCccCCHhHHHHHHHHc
Confidence            334445444 55555555555555555555544

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.6e-13  Score=46.95  Aligned_cols=34  Identities=21%  Similarity=0.587  Sum_probs=31.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ   35 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~   35 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eow_A           12 PYKCNECGKAFRARSSLAIHQATHSGEKP-SGPSS   45 (46)
T ss_dssp             CEECTTSCCEESSHHHHHHHHHHHCCCSC-SCTTC
T ss_pred             CeeccccCChhcCHHHHHHHHHHcCCCCC-CCCCC
Confidence            58899999999999999999999999888 99864

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=6.6e-13  Score=46.15  Aligned_cols=29  Identities=31%  Similarity=0.715  Sum_probs=16.1

Q ss_pred             HhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         24 ECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        24 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      |+++++ |.|..|++.|.....|..|+++|
T Consensus         7 h~~~k~-~~C~~C~k~F~~~~~L~~H~~~H   35 (45)
T 2epu_A            7 GTGQKP-FECTHCGKSFRAKGNLVTHQRIH   35 (45)
T ss_dssp             CCSCCS-EEETTTTEEESSHHHHHHHHTTT
T ss_pred             CCCCcC-ccCCCCCCccCChHHHHHHHHHh
Confidence            444444 55555555555555555555554

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.3e-13  Score=47.10  Aligned_cols=34  Identities=21%  Similarity=0.471  Sum_probs=30.3

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|..|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2emy_A            3 SGSSGTGENP-YECHECGKAFSRKYQLISHQRTHA   36 (46)
T ss_dssp             CCCCCCSSCC-EECSSSCCEESSHHHHHHHHHHHT
T ss_pred             CCCCCCCCcC-cCCCCCCcccCcHHHHHHHHHHcC
Confidence            5567888887 999999999999999999999875

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.7e-13  Score=46.94  Aligned_cols=34  Identities=26%  Similarity=0.565  Sum_probs=24.3

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|++|++.|...+.|..|+++|.
T Consensus         2 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   35 (42)
T 2ytb_A            2 SSGSSGGEKP-YRCDQCGKAFSQKGSLIVHIRVHT   35 (42)
T ss_dssp             CCCCCCSCCS-BCCTTTTCCBSSHHHHHTTGGGTS
T ss_pred             CccccCCCCC-eeCCCccchhCCHHHHHHHHHHhC
Confidence            3455666666 788888888887777777777664

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=4.2e-13  Score=46.78  Aligned_cols=34  Identities=18%  Similarity=0.333  Sum_probs=30.2

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|++|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2epw_A            3 SGSSGTGEKP-CKCTECGKAFCWKSQLIMHQRTHV   36 (46)
T ss_dssp             CCCCCCCCCS-EECSSSCCEESSSHHHHHHHHHCC
T ss_pred             CcccCCCCCC-eeCCCCCCccCCHHHHHHHHHHhC
Confidence            5567888887 999999999999999999999875

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=5.6e-13  Score=46.49  Aligned_cols=34  Identities=21%  Similarity=0.442  Sum_probs=30.2

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|.+|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2epz_A            3 SGSSGTGEKP-FDCIDCGKAFSDHIGLNQHRRIHT   36 (46)
T ss_dssp             CCSSCCCCCS-BCCTTTCCCBSSHHHHHHHHTTTT
T ss_pred             CCCCcCCCCC-eECCCCCceeCCHHHHHHHHHHhC
Confidence            4567888887 999999999999999999999875

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.8e-12  Score=45.17  Aligned_cols=34  Identities=24%  Similarity=0.572  Sum_probs=31.2

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ   35 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~   35 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2emi_A           12 HYECSECGKAFIQKSTLSMHQRIHRGEKP-SGPSS   45 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHGGGCSCCC-CSCCC
T ss_pred             CCCCCCCCcccCCHHHHHHHHhHhCCCCC-CCCCC
Confidence            58899999999999999999999999887 99864

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=4.3e-13  Score=46.78  Aligned_cols=34  Identities=29%  Similarity=0.631  Sum_probs=30.2

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|+.|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2eq0_A            3 SGSSGTGEKP-YKCHECGKVFRRNSHLARHQLIHT   36 (46)
T ss_dssp             CCCCTTCCCC-EECTTTCCEESSHHHHHHHHTTTC
T ss_pred             CCcCCCCCCC-eECCCCCchhCCHHHHHHHHHHcC
Confidence            4567888887 999999999999999999998875

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=5.9e-13  Score=46.47  Aligned_cols=34  Identities=24%  Similarity=0.469  Sum_probs=30.2

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|.+|++.|...+.|..|+++|.
T Consensus         3 h~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2en9_A            3 SGSSGAGKKL-FKCNECKKTFTQSSSLTVHQRIHT   36 (46)
T ss_dssp             CCSSCCSSCC-CBCTTTCCBCSSHHHHHHHHHHHT
T ss_pred             CCCCCCCCCC-EECCccCcccCCHHHHHHHHHHcC
Confidence            4567888887 999999999999999999999875

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.29  E-value=5.1e-13  Score=45.73  Aligned_cols=33  Identities=27%  Similarity=0.424  Sum_probs=23.7

Q ss_pred             HHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         21 KKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        21 ~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +.+|+++++ |.|++|++.|...+.|..|+++|.
T Consensus         3 ~~~H~~~~~-~~C~~C~k~f~~~~~l~~H~~~H~   35 (42)
T 2epc_A            3 SGSSGGETP-YLCGQCGKSFTQRGSLAVHQRSCS   35 (42)
T ss_dssp             CSCCCSSCC-EECSSSCCEESSHHHHHHHHHHTT
T ss_pred             CccCCCCCC-eECCCCCcccCCHHHHHHHhhhcC
Confidence            345666666 788888888888778887777664

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=3.9e-13  Score=46.95  Aligned_cols=34  Identities=18%  Similarity=0.417  Sum_probs=30.4

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|..|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2emf_A            3 SGSSGTGGKH-FECTECGKAFTRKSTLSMHQKIHT   36 (46)
T ss_dssp             CCSSSSSSCC-EECSSSCCEESCHHHHHHHGGGTS
T ss_pred             cccccCCCCC-eECCCCCchhCCHHHHHHHHHHhC
Confidence            5667888887 999999999999999999999875

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=5e-13  Score=46.62  Aligned_cols=34  Identities=18%  Similarity=0.417  Sum_probs=30.2

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|++|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eoq_A            3 SGSSGTGEKP-FKCDICGKSFCGRSRLNRHSMVHT   36 (46)
T ss_dssp             CCCCSSSSCS-CCCSSSCCCCSSHHHHHHHHHHTT
T ss_pred             CCCCCCCCCC-cCCCcCCchhCCHHHHHHHHHHcC
Confidence            5567888887 999999999999999999999875

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=4.4e-13  Score=44.76  Aligned_cols=31  Identities=19%  Similarity=0.527  Sum_probs=27.1

Q ss_pred             HHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         23 FECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        23 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +|+++++ |.|..|++.|...+.|..|+++|+
T Consensus         3 ~h~~~k~-~~C~~C~k~f~~~~~l~~H~~~h~   33 (37)
T 2elo_A            3 SGSSGRS-YSCPVCEKSFSEDRLIKSHIKTNH   33 (37)
T ss_dssp             CCCCCCC-CEETTTTEECSSHHHHHHHHHHHC
T ss_pred             CCCCCCC-cCCCCCCCccCCHHHHHHHHHHHc
Confidence            4677777 999999999999999999998875

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=4.2e-13  Score=46.81  Aligned_cols=33  Identities=21%  Similarity=0.480  Sum_probs=20.8

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      |+.+|+++++ |.|.+|++.|...+.|..|+++|
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2en3_A            3 SGSSGTGEKP-FQCKECGMNFSWSCSLFKHLRSH   35 (46)
T ss_dssp             CCCCSCCCCS-EECSSSCCEESSSHHHHHHHHHH
T ss_pred             cccccCCCCC-eeCcccChhhCCHHHHHHHHHHh
Confidence            3445556555 66666777666666666666654

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=3.2e-13  Score=47.12  Aligned_cols=34  Identities=24%  Similarity=0.471  Sum_probs=30.2

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|..|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2emh_A            3 SGSSGTGERP-YICTVCGKAFTDRSNLIKHQKIHT   36 (46)
T ss_dssp             CCCSCSCCCS-EECTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCCCCCCCC-cCCCCCCchhCCHHHHHHHHHhcC
Confidence            5667888887 999999999999999999998874

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2e-12  Score=44.60  Aligned_cols=33  Identities=21%  Similarity=0.532  Sum_probs=30.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP   34 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~   34 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2en7_A           12 PYVCNECGKAFRSKSYLIIHTRTHTGESG-PSSG   44 (44)
T ss_dssp             SSCCTTTCCCCSSHHHHHHHHTTTCCSSS-SCCC
T ss_pred             CeECCCCCCccCCHHHHHHHhhhcCCCCC-CCCC
Confidence            68999999999999999999999999887 9874

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.8e-13  Score=46.84  Aligned_cols=34  Identities=21%  Similarity=0.470  Sum_probs=26.1

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|++|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (44)
T 2eoj_A            3 SGSSGTGENP-YECCECGKVFSRKDQLVSHQKTHS   36 (44)
T ss_dssp             SCCSSSSCCS-CEETTTTEECSSHHHHHHHHTTSS
T ss_pred             CccccCCCcC-eeCCCCCCccCCHHHHHHHHHHcC
Confidence            4556777776 888888888888888888887764

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=6e-13  Score=46.39  Aligned_cols=35  Identities=26%  Similarity=0.439  Sum_probs=30.9

Q ss_pred             hHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         19 RHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        19 ~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      .|+.+|+++++ |.|++|++.|...+.|..|+++|.
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eme_A            2 SSGSSGSGEKP-YVCDYCGKAFGLSAELVRHQRIHT   36 (46)
T ss_dssp             CCCCTTCCCCS-EECSSSCCEESSHHHHHHHHGGGC
T ss_pred             CCCCCCCCCCC-eECCCCChhhCCHHHHHHHHHhcC
Confidence            35667888887 999999999999999999999875

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=3.9e-13  Score=46.10  Aligned_cols=33  Identities=27%  Similarity=0.577  Sum_probs=24.2

Q ss_pred             HHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         21 KKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        21 ~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +.+|+++++ |.|++|++.|...+.|..|+++|.
T Consensus         3 ~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   35 (42)
T 2eos_A            3 SGSSGGEKP-YPCEICGTRFRHLQTLKSHLRIHT   35 (42)
T ss_dssp             CSCCSSSCC-BCCSSSCCCBSSHHHHHHHTTTTS
T ss_pred             CcccCCCCC-EECCCCCCccCCHHHHHHHHHhcC
Confidence            445666666 888888888888888888877664

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=3.6e-13  Score=46.97  Aligned_cols=34  Identities=32%  Similarity=0.632  Sum_probs=30.4

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|++|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~~~-~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2eoe_A            3 SGSSGTGEKP-YKCNECGKVFTQNSHLANHQRIHT   36 (46)
T ss_dssp             CSSCCCCCCS-SEETTTTEECSSHHHHHHHHGGGS
T ss_pred             CCCCCCCCCC-eECCCcChhhCCHHHHHHHHHHcC
Confidence            5567888887 999999999999999999999875

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=3.9e-13  Score=46.93  Aligned_cols=34  Identities=32%  Similarity=0.684  Sum_probs=30.2

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|..|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2yth_A            3 SGSSGSGEKP-FQCEECGKRFTQNSHLHSHQRVHT   36 (46)
T ss_dssp             CCSCCCCSSS-BCCSSSCCCBSSHHHHHHHGGGGT
T ss_pred             cccCCCCCcC-CCCCCCCcccCCHHHHHHHHHhcC
Confidence            5567888887 999999999999999999998875

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=4.5e-13  Score=46.77  Aligned_cols=34  Identities=26%  Similarity=0.462  Sum_probs=30.3

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|..|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2em4_A            3 SGSSGTGQRP-YECIECGKAFKTKSSLICHRRSHT   36 (46)
T ss_dssp             SCCCCCCSSS-EECSSSCCEESSHHHHHHHHHHHS
T ss_pred             CccccCCCcC-cCCCCCCCccCCHHHHHHHHHhcC
Confidence            5667888887 999999999999999999999875

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=6.5e-13  Score=46.36  Aligned_cols=34  Identities=24%  Similarity=0.495  Sum_probs=30.2

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|.+|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytq_A            3 SGSSGAGEKP-YGCSECGKAFSSKSYLIIHMRTHS   36 (46)
T ss_dssp             CSSCSSCCCS-CBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred             CCcCcCCCCC-cCCCccChhhCChHHHHHHHHHhC
Confidence            4567888887 999999999999999999999875

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.7e-12  Score=45.28  Aligned_cols=34  Identities=18%  Similarity=0.436  Sum_probs=31.3

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ   35 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~   35 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2eoz_A           12 PYSCNVCGKAFVLSAHLNQHLRVHTQETL-SGPSS   45 (46)
T ss_dssp             SEEETTTTEEESSHHHHHHHHHHHSSCCS-SSCCC
T ss_pred             CeECcccChhhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            58899999999999999999999999887 99864

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=4.5e-13  Score=46.77  Aligned_cols=34  Identities=18%  Similarity=0.264  Sum_probs=24.0

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|.++++ |.|..|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eoy_A            3 SGSSGQKEKC-FKCNKCEKTFSCSKYLTQHERIHT   36 (46)
T ss_dssp             CCCCCCCSCC-EECSSSCCEESSSHHHHHHHTTCC
T ss_pred             CccccCCCCC-EECcCCCCcCCCHHHHHHHHHHcC
Confidence            3455666666 777777777777777777777653

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.29  E-value=1.8e-12  Score=44.38  Aligned_cols=33  Identities=21%  Similarity=0.550  Sum_probs=30.3

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP   34 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~   34 (55)
                      ||.|..|++.|...+.|..|+.+|.++++ |.|.
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   42 (42)
T 2el5_A           10 PYECSECGKAFNRKDQLISHQRTHAGESG-PSSG   42 (42)
T ss_dssp             SEECSSSCCEESSHHHHHHHHGGGCCCCS-CCCC
T ss_pred             CccCCCcChhhCCHHHHHHHHHhcCCCCC-CCCC
Confidence            57899999999999999999999999887 9874

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=4.7e-13  Score=46.69  Aligned_cols=34  Identities=21%  Similarity=0.603  Sum_probs=31.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ   35 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~   35 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eq1_A           12 PYKCNECGKAFRAHSNLTTHQVIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCTTTTCCCSSHHHHHHHHTTTCCSCC-SSCCC
T ss_pred             CeECCcCChhhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            68999999999999999999999999887 99864

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=5.3e-13  Score=46.59  Aligned_cols=34  Identities=26%  Similarity=0.675  Sum_probs=31.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ   35 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~   35 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2em6_A           12 CYKCDVCGKEFSQSSHLQTHQRVHTGEKP-SGPSS   45 (46)
T ss_dssp             CCBCSSSCCBCSSHHHHHHHHTTTSSSCC-CCTTC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            68999999999999999999999999888 99864

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2.2e-12  Score=44.49  Aligned_cols=33  Identities=18%  Similarity=0.468  Sum_probs=30.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP   34 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~   34 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2eof_A           12 PYECNECQKAFNTKSNLMVHQRTHTGESG-PSSG   44 (44)
T ss_dssp             SEECTTTCCEESCHHHHHHHHHHTTTSSC-SCCC
T ss_pred             CeECCCCCcccCCHhHHHHHHHHhCCCCC-CCCC
Confidence            57899999999999999999999999887 9874

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.5e-13  Score=46.74  Aligned_cols=34  Identities=35%  Similarity=0.656  Sum_probs=30.3

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|..|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytk_A            3 SGSSGSGEKP-YKCNECGKVFTQNSHLTNHWRIHT   36 (46)
T ss_dssp             CCCCSSSSCS-EECSSSCCEESSHHHHHHHHHHHS
T ss_pred             CcccCCCCCC-EeCCcCCCccCCHHHHHHHHHHHC
Confidence            5567888887 999999999999999999999875

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=5.4e-13  Score=46.55  Aligned_cols=35  Identities=23%  Similarity=0.514  Sum_probs=30.8

Q ss_pred             hHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         19 RHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        19 ~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      .|+.+|+++++ |.|++|++.|...+.|..|+++|.
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ep2_A            2 SSGSSGTGEKP-YECSICGKSFTKKSQLHVHQQIHT   36 (46)
T ss_dssp             CSSSCSSCCCS-EECSSSCCEESSHHHHHHHHHTTS
T ss_pred             CCCCCCCCCcC-cCCCCCCcccCCHHHHHHHHHHhC
Confidence            35667888887 999999999999999999999875

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=5.2e-13  Score=46.62  Aligned_cols=34  Identities=21%  Similarity=0.566  Sum_probs=30.0

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|.++++ |.|.+|++.|...+.|..|+++|.
T Consensus         3 h~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2emz_A            3 SGSSGSGERP-FKCNECGKGFGRRSHLAGHLRLHS   36 (46)
T ss_dssp             CCSCSSCCCS-CCCSSSCCCCSSHHHHHHHHHHHH
T ss_pred             CCcCCCCCCC-eECCCCCcccCCHHHHHHHHHHhC
Confidence            5567888887 999999999999999999998874

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.28  E-value=2.4e-12  Score=43.99  Aligned_cols=32  Identities=19%  Similarity=0.518  Sum_probs=29.7

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQC   33 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c   33 (55)
                      ||.|..|++.|...+.|..|+.+|+++++ |.|
T Consensus        11 ~~~C~~C~k~f~~~~~l~~H~~~H~~~k~-~~C   42 (42)
T 2epc_A           11 PYLCGQCGKSFTQRGSLAVHQRSCSQSGP-SSG   42 (42)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHTTCCCC-CCC
T ss_pred             CeECCCCCcccCCHHHHHHHhhhcCCCCC-CCC
Confidence            68899999999999999999999999887 876

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=6.2e-13  Score=46.42  Aligned_cols=34  Identities=24%  Similarity=0.619  Sum_probs=31.3

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ   35 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~   35 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2enh_A           12 PYECDVCRKAFSHHASLTQHQRVHSGEKP-SGPSS   45 (46)
T ss_dssp             SCBCTTTCCBCSSSHHHHHHGGGSCCSCC-CCCCC
T ss_pred             CcCCCCcCchhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            68999999999999999999999999887 99863

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.28  E-value=1.7e-12  Score=42.71  Aligned_cols=30  Identities=23%  Similarity=0.486  Sum_probs=25.9

Q ss_pred             HhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         24 ECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        24 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+++++ |.|..|++.|.+.+.|..|+++|+
T Consensus         2 h~~~k~-~~C~~C~k~f~~~~~L~~H~~~h~   31 (35)
T 2elx_A            2 SSGSSG-YVCALCLKKFVSSIRLRSHIREVH   31 (35)
T ss_dssp             CCCCCS-EECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCCCCC-eECCCCcchhCCHHHHHHHHHHHc
Confidence            456676 999999999999999999998875

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.5e-12  Score=45.67  Aligned_cols=34  Identities=24%  Similarity=0.532  Sum_probs=19.7

Q ss_pred             CCCc--cccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          2 FMCD--VCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         2 ~~c~--~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      |.|.  .|++.|.....|..|+.+|+++++ |.|..|
T Consensus        13 ~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   48 (48)
T 2ent_A           13 FACTWPGCGWRFSRSDELSRHRRSHSGVKP-SGPSSG   48 (48)
T ss_dssp             EECCSSSCCCEESSHHHHHHHHTTSCCCCS-CSSCCC
T ss_pred             eECCCCCCCCccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            4555  566666666666666666665555 665544

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.6e-13  Score=46.78  Aligned_cols=34  Identities=24%  Similarity=0.653  Sum_probs=31.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ   35 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~   35 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eon_A           12 PYKCQVCGKAFRVSSHLVQHHSVHSGERP-SGPSS   45 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHTTTTTSCCS-CTTSC
T ss_pred             ccCCCCCCcccCcHHHHHHHHHhcCCCCC-CCCCC
Confidence            68999999999999999999999999887 99874

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.8e-13  Score=46.64  Aligned_cols=34  Identities=24%  Similarity=0.541  Sum_probs=31.3

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ   35 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~   35 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2ytf_A           12 PFECSECQKAFNTKSNLIVHQRTHTGEKP-SGPSS   45 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHTSCSSSS-SCCCC
T ss_pred             CcCCCCCCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            58899999999999999999999999887 99874

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.1e-13  Score=46.86  Aligned_cols=34  Identities=29%  Similarity=0.482  Sum_probs=30.2

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|.+|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2emp_A            3 SGSSGTGVKP-YMCNECGKAFSVYSSLTTHQVIHT   36 (46)
T ss_dssp             CCSCSSCCCS-EECSSSCCEESCHHHHHHHHHHHH
T ss_pred             cccccCCCcC-eECCCCCchhCCHHHHHHHHHHcC
Confidence            5667888887 999999999999999999998874

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.3e-13  Score=46.79  Aligned_cols=34  Identities=26%  Similarity=0.564  Sum_probs=30.3

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|+.|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ene_A            3 SGSSGTGEKP-YKCNECGKVFRHNSYLSRHQRIHT   36 (46)
T ss_dssp             CCSSCCCSSS-EECSSSCCEESSHHHHHHHHTTTC
T ss_pred             cccCCCCCCC-eECCCCCchhCChHHHHHHHhhcC
Confidence            5667888887 999999999999999999999875

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4e-13  Score=46.84  Aligned_cols=32  Identities=34%  Similarity=0.625  Sum_probs=18.4

Q ss_pred             HHHHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         21 KKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        21 ~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      +.+|+++++ |.|..|++.|...+.|..|+++|
T Consensus         4 ~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2yrj_A            4 GSSGTGEKP-YRCGECGKAFAQKANLTQHQRIH   35 (46)
T ss_dssp             CCCCCCCCC-EECSSSCCEESSHHHHHHHHTTT
T ss_pred             ccCCCCCCC-eECCCCCCccCCHHHHHHHHHHc
Confidence            344555554 66666666666666666665554

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.8e-12  Score=45.15  Aligned_cols=34  Identities=24%  Similarity=0.628  Sum_probs=31.2

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ   35 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~   35 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2yrj_A           12 PYRCGECGKAFAQKANLTQHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHTTTSSCCS-SCSCC
T ss_pred             CeECCCCCCccCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            58899999999999999999999999887 99864

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2.4e-12  Score=44.02  Aligned_cols=33  Identities=36%  Similarity=0.649  Sum_probs=22.8

Q ss_pred             HHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         21 KKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        21 ~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +.+|+++++ |.|+.|++.|...+.|..|+++|.
T Consensus         3 ~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   35 (42)
T 2en2_A            3 SGSSGGEKP-YKCETCGARFVQVAHLRAHVLIHT   35 (42)
T ss_dssp             CCCCCSSCS-EECTTTCCEESSHHHHHHHTHHHH
T ss_pred             CcccCCCCC-EeCCCcChhhCCHHHHHHHHHHcC
Confidence            345666666 777777777777777777776653

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2.8e-12  Score=44.70  Aligned_cols=33  Identities=24%  Similarity=0.532  Sum_probs=30.8

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP   34 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~   34 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2yto_A           12 PYKCSDCGKAFTRKSGLHIHQQSHTGERH-SGPS   44 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHTCCCB-TTTB
T ss_pred             CEECcccCCccCCHhHHHHHHHHcCCCCC-CCCC
Confidence            68899999999999999999999999887 9986

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=3.6e-13  Score=46.16  Aligned_cols=32  Identities=19%  Similarity=0.458  Sum_probs=29.7

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQC   33 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c   33 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|
T Consensus        11 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C   42 (42)
T 2en2_A           11 PYKCETCGARFVQVAHLRAHVLIHTGSGP-SSG   42 (42)
T ss_dssp             SEECTTTCCEESSHHHHHHHTHHHHSCCS-SCC
T ss_pred             CEeCCCcChhhCCHHHHHHHHHHcCCCCC-CCC
Confidence            68899999999999999999999999887 876

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.27  E-value=1.9e-12  Score=42.71  Aligned_cols=30  Identities=20%  Similarity=0.537  Sum_probs=26.0

Q ss_pred             HhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         24 ECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        24 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+++++ |.|.+|++.|...+.|..|+++|.
T Consensus         2 H~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~   31 (35)
T 1srk_A            2 SSGKRP-FVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSC-EECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCcC-eeCCCCCcccCCHHHHHHHHHHcC
Confidence            566677 999999999999999999998875

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=4.2e-13  Score=46.80  Aligned_cols=34  Identities=26%  Similarity=0.714  Sum_probs=31.3

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ   35 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~   35 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~p-~~C~~   45 (46)
T 2yts_A           12 PYICNECGKSFIQKSHLNRHRRIHTGEKP-SGPSS   45 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHGGGTSSCCS-SCCCC
T ss_pred             CEECCCCChhhCChHHHHHHHHhcCCCCC-cCCCC
Confidence            57899999999999999999999999887 99864

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.27  E-value=3.8e-13  Score=46.90  Aligned_cols=35  Identities=23%  Similarity=0.429  Sum_probs=30.6

Q ss_pred             hHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         19 RHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        19 ~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      .|+.+|+++++ |.|+.|++.|...+.|..|+++|.
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2el4_A            2 SSGSSGTGVKP-YGCSQCAKTFSLKSQLIVHQRSHT   36 (46)
T ss_dssp             CCCCCSCCCCS-EECSSSSCEESSHHHHHHHGGGSS
T ss_pred             ccccCCCCCCc-eECCCCCchhCCHHHHHHHHHHhC
Confidence            35667888887 999999999999999999998875

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=7.3e-13  Score=46.23  Aligned_cols=34  Identities=29%  Similarity=0.682  Sum_probs=30.2

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|..|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2em2_A            3 SGSSGSGEKP-FKCKECGKAFRQNIHLASHLRIHT   36 (46)
T ss_dssp             CCCSCCCCCS-EECSSSCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCCCCCC-EECCcCCchhCCHHHHHHHHHHhC
Confidence            4567888887 999999999999999999999875

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=3.2e-12  Score=43.38  Aligned_cols=30  Identities=20%  Similarity=0.547  Sum_probs=26.1

Q ss_pred             HhCCCCCccCCC--CCcccccchHHHHHHHhhc
Q psy12023         24 ECGQEPKYQCPQ--CPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        24 ~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~   54 (55)
                      +.+++| |.|..  |++.|.+.+.|..|+++|.
T Consensus         4 ~~gekp-~~C~~~~C~k~F~~~~~L~~H~r~Ht   35 (38)
T 2eln_A            4 GSSGIL-LKCPTDGCDYSTPDKYKLQAHLKVHT   35 (38)
T ss_dssp             SSCCCC-EECSSSSCCCEESCHHHHHHHHHHHS
T ss_pred             CCCCCC-CCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            456677 99986  9999999999999999885

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=6.5e-13  Score=46.36  Aligned_cols=34  Identities=18%  Similarity=0.404  Sum_probs=30.1

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+++|+++++ |.|..|++.|...+.|..|+++|.
T Consensus         3 h~~~h~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2elz_A            3 SGSSGSVEKP-YKCEDCGKGYNRRLNLDMHQRVHM   36 (46)
T ss_dssp             CCSCCCCCSS-CBCSSSCCBCSSHHHHHHHGGGGG
T ss_pred             CCCCCCCCCC-eeCcccCchhCCHHHHHHHHHhcC
Confidence            4567888887 999999999999999999999875

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=6e-13  Score=46.42  Aligned_cols=34  Identities=26%  Similarity=0.613  Sum_probs=30.2

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|.+|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytd_A            3 SGSSGSGEKP-YKCSECGKAFHRHTHLNEHRRIHT   36 (46)
T ss_dssp             CCCCSCCCCS-EECSSSCCEESSHHHHHHHHHHHT
T ss_pred             CccccCCCcC-eECCCCCCeeCChHHHHHHHHHcC
Confidence            5567888887 999999999999999999999875

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=9.3e-13  Score=45.92  Aligned_cols=34  Identities=18%  Similarity=0.211  Sum_probs=30.2

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|++|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2yso_A            3 SGSSGSREKS-HQCRECGEIFFQYVSLIEHQVLHM   36 (46)
T ss_dssp             CSCCSSCCCC-EECTTTCCEESSHHHHHHHHHHHS
T ss_pred             cccccCCCCC-EEccccChhhCCHHHHHHHHHHhC
Confidence            4567888887 999999999999999999999875

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=5.1e-13  Score=46.56  Aligned_cols=34  Identities=15%  Similarity=0.240  Sum_probs=30.2

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|+.|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2en8_A            3 SGSSGSGEKS-HTCDECGKNFCYISALRIHQRVHM   36 (46)
T ss_dssp             CCCCCCCCSS-EECTTTCCEESSHHHHHHHHTTTC
T ss_pred             ccccCCCCCC-eECCCcCcccCCHHHHHHHHHHhC
Confidence            5567888887 999999999999999999998875

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=2.5e-12  Score=44.03  Aligned_cols=32  Identities=19%  Similarity=0.582  Sum_probs=29.7

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQC   33 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c   33 (55)
                      ||.|..|++.|...+.|..|+.+|.++++ |.|
T Consensus        11 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C   42 (42)
T 2eos_A           11 PYPCEICGTRFRHLQTLKSHLRIHTGSGP-SSG   42 (42)
T ss_dssp             CBCCSSSCCCBSSHHHHHHHTTTTSCCSS-TTC
T ss_pred             CEECCCCCCccCCHHHHHHHHHhcCCCCC-CCC
Confidence            68999999999999999999999999887 876

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=7.2e-13  Score=46.17  Aligned_cols=34  Identities=24%  Similarity=0.531  Sum_probs=30.2

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|..|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eor_A            3 SGSSGTGEKP-YNCEECGKAFIHDSQLQEHQRIHT   36 (46)
T ss_dssp             SSSSSSCCCS-EECTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCcCcCCCcC-ccCCCCCCCcCCHHHHHHHHHhcC
Confidence            5667888887 999999999999999999999874

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=5.1e-13  Score=46.63  Aligned_cols=34  Identities=21%  Similarity=0.338  Sum_probs=30.2

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|++|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2em5_A            3 SGSSGSSTKS-HQCHECGRGFTLKSHLNQHQRIHT   36 (46)
T ss_dssp             CCCCCCCSCS-EECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CcCCCCCCCC-eECCcCCCccCCHHHHHHHHHHhC
Confidence            5567888787 999999999999999999998875

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=9.2e-13  Score=45.99  Aligned_cols=34  Identities=24%  Similarity=0.489  Sum_probs=29.9

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|.+|++.|...+.|..|+++|.
T Consensus         3 h~~~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytm_A            3 SGSSGTGEKP-YKCMECGKAFGDNSSCTQHQRLHT   36 (46)
T ss_dssp             SCCCCSSCCS-SSBTTTTBCCSSHHHHHHHHHHHH
T ss_pred             CCcCCCCCCC-cCCCCCCchhCCHHHHHHHHHHcC
Confidence            4566788887 999999999999999999999874

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=4.5e-13  Score=46.74  Aligned_cols=34  Identities=29%  Similarity=0.609  Sum_probs=30.0

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|.+|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2yu8_A            3 SGSSGTGEKP-YKCNECGKVFTQNSHLARHRRVHT   36 (46)
T ss_dssp             CCCCCCCCSS-EECSSSCCEESSSHHHHHHTHHHH
T ss_pred             cCcCCCCCCC-eECCcCCchhCCHHHHHHHHHhcC
Confidence            5567888887 999999999999999999998874

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=6.7e-13  Score=46.29  Aligned_cols=34  Identities=24%  Similarity=0.451  Sum_probs=30.1

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|++|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2em7_A            3 SGSSGTGEKP-YKCEECGKGFICRRDLYTHHMVHT   36 (46)
T ss_dssp             CCCSSSCCCS-EECSSSCCEESCHHHHHHHGGGGT
T ss_pred             CCCCCCCCcC-ccCCCccchhCCHHHHHHHHHHhC
Confidence            4567788887 999999999999999999999875

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=2.6e-12  Score=44.36  Aligned_cols=34  Identities=18%  Similarity=0.358  Sum_probs=22.6

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|..|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (44)
T 2emb_A            3 SGSSGHTRKR-YECSKCQATFNLRKHLIQHQKTHA   36 (44)
T ss_dssp             CCSCCCCCSS-EECTTTCCEESCHHHHHHHGGGGC
T ss_pred             cccccCCCCC-eECCCCCCccCCHHHHHHHHHHcC
Confidence            3445666665 777777777777777777776653

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.7e-12  Score=43.86  Aligned_cols=32  Identities=28%  Similarity=0.642  Sum_probs=29.8

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQC   33 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c   33 (55)
                      ||.|..|++.|...+.|..|+.+|+++++ |.|
T Consensus        11 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C   42 (42)
T 2ytb_A           11 PYRCDQCGKAFSQKGSLIVHIRVHTGSGP-SSG   42 (42)
T ss_dssp             SBCCTTTTCCBSSHHHHHTTGGGTSCCSC-CCC
T ss_pred             CeeCCCccchhCCHHHHHHHHHHhCCCCC-CCC
Confidence            68999999999999999999999999887 876

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.26  E-value=9e-13  Score=45.98  Aligned_cols=34  Identities=24%  Similarity=0.479  Sum_probs=30.1

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+++|+++++ |.|++|++.|.....|..|+++|.
T Consensus         3 h~~~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2el6_A            3 SGSSGAGVNP-YKCSQCEKSFSGKLRLLVHQRMHT   36 (46)
T ss_dssp             SCCSSCCCCS-EECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CCCCCCCCCC-eECCCCCcccCCHHHHHHHHHHcC
Confidence            4567788887 999999999999999999999875

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=5.7e-13  Score=46.47  Aligned_cols=35  Identities=26%  Similarity=0.606  Sum_probs=30.9

Q ss_pred             hHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         19 RHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        19 ~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      .|+.+|+++++ |.|.+|++.|...+.|..|+++|.
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2en1_A            2 SSGSSGSGEKP-FKCEECGKRFTQNSQLHSHQRVHT   36 (46)
T ss_dssp             CSTTCCCCCCS-EEETTTTEEESSHHHHHHHGGGGS
T ss_pred             CcccCCCCCCC-eeCCCCCcccCCHHHHHHHHHHcC
Confidence            35677888887 999999999999999999998875

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=6.1e-13  Score=46.02  Aligned_cols=33  Identities=12%  Similarity=0.384  Sum_probs=30.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP   34 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~   34 (55)
                      ||.|..|++.|...+.|..|+.+|.++++ |.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2emb_A           12 RYECSKCQATFNLRKHLIQHQKTHAAKSG-PSSG   44 (44)
T ss_dssp             SEECTTTCCEESCHHHHHHHGGGGCCCCC-TTCC
T ss_pred             CeECCCCCCccCCHHHHHHHHHHcCCCCC-cCCC
Confidence            57899999999999999999999999887 9874

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=1e-12  Score=45.84  Aligned_cols=34  Identities=18%  Similarity=0.406  Sum_probs=30.1

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|.+|++.|...+.|..|+++|.
T Consensus         3 h~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2enc_A            3 SGSSGSGEKP-FKCEECGKGFYTNSQCYSHQRSHS   36 (46)
T ss_dssp             CSSCCCCCCS-EECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCCCCCCCCC-cCCCCCCCcCCChHHHHHHHHHhC
Confidence            4567788887 999999999999999999999875

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=99.26  E-value=3.3e-12  Score=45.06  Aligned_cols=30  Identities=33%  Similarity=0.531  Sum_probs=24.2

Q ss_pred             HhCCCCCccCCCCCcccccchHHHHHHH-hhc
Q psy12023         24 ECGQEPKYQCPQCPYRAKQNAHLTTHMA-IKH   54 (55)
Q Consensus        24 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~-~~~   54 (55)
                      |+++++ |.|.+|++.|.....|..|++ +|.
T Consensus         2 Ht~~kp-~~C~~C~k~F~~~~~L~~H~~~~H~   32 (48)
T 3iuf_A            2 EDRDKP-YACDICGKRYKNRPGLSYHYAHSHL   32 (48)
T ss_dssp             CTTTSC-EECTTTCCEESSHHHHHHHHHHSSC
T ss_pred             CCCCcC-EECCCcCcccCCHHHHHHHhhhhcC
Confidence            567777 888888888888888888888 653

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=4.8e-13  Score=46.63  Aligned_cols=32  Identities=38%  Similarity=0.631  Sum_probs=19.3

Q ss_pred             HHHHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         21 KKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        21 ~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      +.+|+++++ |.|+.|++.|...+.|..|+++|
T Consensus         4 ~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eq3_A            4 GSSGTGEKP-YECNQCGKAFSVRSSLTTHQAIH   35 (46)
T ss_dssp             CCSSCCCCS-SEETTTTEECSSHHHHHHHHTTS
T ss_pred             ccCCCCCCC-eECCCCChhhCCHHHHHHHHHHh
Confidence            344555555 66666666666666666666554

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=1.9e-12  Score=44.10  Aligned_cols=31  Identities=32%  Similarity=0.540  Sum_probs=21.4

Q ss_pred             HHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         23 FECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        23 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +|+++++ |.|++|++.|...+.|..|+++|.
T Consensus         4 ~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   34 (41)
T 2ept_A            4 GSSGQRV-YECQECGKSFRQKGSLTLHERIHT   34 (41)
T ss_dssp             SCCCCCC-EECSSSCCEESSHHHHHHHGGGCC
T ss_pred             ccCCCCC-eECCCCCCCcCCHHHHHHHHHHhC
Confidence            3455565 777777777777777777776654

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=1.5e-12  Score=45.00  Aligned_cols=33  Identities=18%  Similarity=0.396  Sum_probs=30.5

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP   34 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~   34 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (44)
T 2eou_A           12 TSECQECGKIFRHSSLLIEHQALHAGESG-PSSG   44 (44)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHHHHTTSCC-CCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHHCCCCC-CCCC
Confidence            68999999999999999999999999888 9874

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.25  E-value=6.5e-13  Score=46.29  Aligned_cols=34  Identities=21%  Similarity=0.475  Sum_probs=30.2

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|..|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2em9_A            3 SGSSGTGEKP-YNCKECGKSFRWASCLLKHQRVHS   36 (46)
T ss_dssp             SCCSCCCCCS-EECSSSCCEESSHHHHHHHGGGGT
T ss_pred             CCCCCCCCcC-eECCccccccCChHHHHHHHHHhC
Confidence            5567888887 999999999999999999998875

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=6.2e-13  Score=46.38  Aligned_cols=34  Identities=24%  Similarity=0.486  Sum_probs=30.3

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|.+|++.|...+.|..|+++|.
T Consensus         3 h~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2en6_A            3 SGSSGSGEKP-YGCNECGKTFSQKSILSAHQRTHT   36 (46)
T ss_dssp             CSCCCCSSCC-EEETTTTEEESSHHHHHHHHHHHS
T ss_pred             CCCccCCCcC-eECCCCCcccCchHHHHHHHHHcC
Confidence            4567888887 999999999999999999999875

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=4.1e-13  Score=46.47  Aligned_cols=34  Identities=24%  Similarity=0.393  Sum_probs=23.0

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|.+|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~~~-~~C~~C~k~F~~~~~L~~H~~~H~   36 (44)
T 2eox_A            3 SGSSGTDSKS-YNCNECGKAFTRIFHLTRHQKIHT   36 (44)
T ss_dssp             CCCCCCCCCC-EEETTTTEEESSSHHHHTTHHHHC
T ss_pred             CCcCCCCCCC-eECcccCcccCCHHHHHHHHHHhC
Confidence            3445666666 777777777777777777776654

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=4.8e-13  Score=46.68  Aligned_cols=34  Identities=26%  Similarity=0.585  Sum_probs=30.1

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|++|++.|...+.|..|+++|.
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytg_A            3 SGSSGTGEKP-FKCGECGKSYNQRVHLTQHQRVHT   36 (46)
T ss_dssp             CCCCCSSCCS-EECTTTCCEESSSHHHHTTGGGGS
T ss_pred             CCCCCCCCCC-eECCCCCcccCCHHHHHHHHHHcC
Confidence            5567888887 999999999999999999998875

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=3.3e-12  Score=44.10  Aligned_cols=33  Identities=15%  Similarity=0.375  Sum_probs=30.3

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP   34 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~   34 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2yu5_A           12 PFKCSKCDRVFTQRNYLVQHERTHARKSG-PSSG   44 (44)
T ss_dssp             SEECSSSSCEESSSHHHHHHHHHCCCCCS-SCCC
T ss_pred             CeECCCCCchhCCHHHHHHHhHhcCCCCC-CCCC
Confidence            68899999999999999999999999887 9874

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=1.1e-12  Score=43.95  Aligned_cols=31  Identities=23%  Similarity=0.446  Sum_probs=27.1

Q ss_pred             HHhCCCCCccCCCCCcccccchHHHHH-HHhhc
Q psy12023         23 FECGQEPKYQCPQCPYRAKQNAHLTTH-MAIKH   54 (55)
Q Consensus        23 ~~~~~~~~~~c~~c~~~f~~~~~l~~h-~~~~~   54 (55)
                      +|+++++ |.|+.|++.|...+.|..| +++|.
T Consensus         3 ~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            3 SGSSGHL-YYCSQCHYSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             SSSSSCE-EECSSSSCEEECHHHHHHHHHHHTC
T ss_pred             ccCCCcC-eECCCCCcccCCHHHHHHHHHHHcc
Confidence            4677777 9999999999999999999 87764

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=2.5e-12  Score=44.84  Aligned_cols=33  Identities=15%  Similarity=0.402  Sum_probs=30.7

Q ss_pred             CCCCccccccccchhhHHhHHHHHhC-CCCCccCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECG-QEPKYQCP   34 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~-~~~~~~c~   34 (55)
                      ||.|..|++.|.....|..|+.+|++ +++ |.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~-~~C~   45 (46)
T 2eoy_A           12 CFKCNKCEKTFSCSKYLTQHERIHTRGVKS-GPSS   45 (46)
T ss_dssp             CEECSSSCCEESSSHHHHHHHTTCCSCCTT-SSSC
T ss_pred             CEECcCCCCcCCCHHHHHHHHHHcCCCCCC-CCCC
Confidence            68899999999999999999999999 888 9986

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3.9e-12  Score=44.29  Aligned_cols=33  Identities=18%  Similarity=0.549  Sum_probs=30.6

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP   34 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~   34 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|+
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~   44 (46)
T 2en3_A           12 PFQCKECGMNFSWSCSLFKHLRSHERTDP-SGPS   44 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHHHHHHHSCC-SSCS
T ss_pred             CeeCcccChhhCCHHHHHHHHHHhCCCCC-CCCC
Confidence            68899999999999999999999999888 9885

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=7.6e-13  Score=46.15  Aligned_cols=34  Identities=21%  Similarity=0.494  Sum_probs=30.1

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.+|+++++ |.|++|++.|...+.|..|+++|.
T Consensus         3 H~~~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ysp_A            3 SGSSGTGEKP-YKCEKCGKGYNSKFNLDMHQKVHT   36 (46)
T ss_dssp             CCCCCSSCCS-EEETTTTEEESCHHHHHHHHTTSC
T ss_pred             CCcCCCCCCC-eECCCCCCccCCHHHHHHHHHhhC
Confidence            4567888887 999999999999999999999875

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.9e-12  Score=44.25  Aligned_cols=33  Identities=21%  Similarity=0.443  Sum_probs=30.3

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP   34 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~   34 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2eox_A           12 SYNCNECGKAFTRIFHLTRHQKIHTRKSG-PSSG   44 (44)
T ss_dssp             CEEETTTTEEESSSHHHHTTHHHHCCCCC-CSCC
T ss_pred             CeECcccCcccCCHHHHHHHHHHhCCCCC-CCCC
Confidence            67899999999999999999999999887 9873

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.7e-12  Score=44.29  Aligned_cols=33  Identities=27%  Similarity=0.475  Sum_probs=30.3

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP   34 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~   34 (55)
                      ||.|..|++.|...+.|..|+.+|.++++ |.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2eoj_A           12 PYECCECGKVFSRKDQLVSHQKTHSGQSG-PSSG   44 (44)
T ss_dssp             SCEETTTTEECSSHHHHHHHHTTSSSSCS-CCCC
T ss_pred             CeeCCCCCCccCCHHHHHHHHHHcCCCCC-CCCC
Confidence            68899999999999999999999999887 9874

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.3e-12  Score=45.66  Aligned_cols=34  Identities=26%  Similarity=0.477  Sum_probs=29.8

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHH-hhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMA-IKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~-~~~   54 (55)
                      |+++|+++++ |.|..|++.|...+.|..|++ +|.
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~~H~   37 (47)
T 2epx_A            3 SGSSGTGKKP-YECIECGKAFIQNTSLIRHWRYYHT   37 (47)
T ss_dssp             CCCCCCCCCS-BCCSSSCCCBSSHHHHHHHHTTTTT
T ss_pred             cccccCCCCC-EECCccCchhCChHHHHHHhHhhcC
Confidence            4567888887 999999999999999999998 764

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3.5e-12  Score=44.38  Aligned_cols=34  Identities=21%  Similarity=0.618  Sum_probs=31.2

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ   35 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~   35 (55)
                      ||.|..|++.|...+.|..|+.+|.++++ |.|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eq3_A           12 PYECNQCGKAFSVRSSLTTHQAIHTGKKP-SGPSS   45 (46)
T ss_dssp             SSEETTTTEECSSHHHHHHHHTTSCCCCC-CCSCC
T ss_pred             CeECCCCChhhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            68899999999999999999999999887 99863

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=6.7e-12  Score=49.92  Aligned_cols=43  Identities=14%  Similarity=0.173  Sum_probs=37.5

Q ss_pred             ccchhhHHhHHHHHhCCCCCccCCCCCcccc-cchHHHHHHHhhc
Q psy12023         11 YKYKNGIYRHKKFECGQEPKYQCPQCPYRAK-QNAHLTTHMAIKH   54 (55)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~-~~~~l~~h~~~~~   54 (55)
                      +.....+..|+.+|.++++ |.|.+|++.|. ....|..|+++|+
T Consensus         6 ~~~~~~~~~h~~~h~~~~~-~~C~~C~k~f~~~~~~L~~H~~~h~   49 (98)
T 2gqj_A            6 SGPGGPEEQWQRAIHERGE-AVCPTCNVVTRKTLVGLKKHMEVCQ   49 (98)
T ss_dssp             CCCCCSCSHHHHTTTTTSC-CCCTTTCCCCSSCSHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHhccCCC-cCCCCCCCChhhhHHHHHHHHHHHc
Confidence            4455667889999999888 99999999999 9999999999875

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.5e-12  Score=45.44  Aligned_cols=34  Identities=24%  Similarity=0.506  Sum_probs=29.8

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ++++|.++++ |.|++|++.|...+.|..|+++|.
T Consensus         3 h~~~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2em8_A            3 SGSSGSGEKP-YKCVECGKGYKRRLDLDFHQRVHT   36 (46)
T ss_dssp             CCCCCCSCCS-EECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCCCCCCCCC-eECcccCchhCCHHHHHHHHHHHc
Confidence            4556788787 999999999999999999999874

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.21  E-value=1.1e-11  Score=41.78  Aligned_cols=23  Identities=26%  Similarity=0.600  Sum_probs=11.8

Q ss_pred             ccCCCCCcccccchHHHHHHHhh
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      |.|.+|++.|...+.|..|+++|
T Consensus         7 ~~C~~C~k~f~~~~~L~~H~~~H   29 (39)
T 1njq_A            7 YTCSFCKREFRSAQALGGHMNVH   29 (39)
T ss_dssp             EECTTTCCEESSHHHHHHHHHTT
T ss_pred             eECCCCCcccCCHHHHHHHHHHc
Confidence            55555555555555555555444

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=6.8e-12  Score=41.49  Aligned_cols=30  Identities=33%  Similarity=0.798  Sum_probs=26.4

Q ss_pred             HhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         24 ECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        24 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.++++ |.|..|++.|...+.|..|+++|.
T Consensus         4 h~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elt_A            4 GSSGKP-YKCPQCSYASAIKANLNVHLRKHT   33 (36)
T ss_dssp             SCCCCS-EECSSSSCEESSHHHHHHHHHHHT
T ss_pred             CCCCCC-CCCCCCCcccCCHHHHHHHHHHcc
Confidence            566677 999999999999999999998875

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=3.4e-12  Score=48.85  Aligned_cols=50  Identities=20%  Similarity=0.363  Sum_probs=42.9

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+.|..|++.|. ...|..|+ .+.++++ +.|+.|++.|. ...|..|++++.
T Consensus        17 ~~~C~~C~~~~~-~~~L~~H~-~~c~~~~-~~C~~C~~~~~-~~~l~~H~~~c~   66 (75)
T 2d9k_A           17 LAVCQHCDLELS-ILKLKEHE-DYCGART-ELCGNCGRNVL-VKDLKTHPEVCG   66 (75)
T ss_dssp             CEECSSSCCEEC-HHHHHHHH-HHHHHCE-EECSSSCCEEE-TTGGGTHHHHBT
T ss_pred             ccCCcccChHhh-HHHHHHHH-hHcCCCc-eEcccCCCcCc-HHHHHHHHHHcc
Confidence            567999999995 78899999 8888887 99999999987 478999988764

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=1.1e-11  Score=41.00  Aligned_cols=30  Identities=17%  Similarity=0.342  Sum_probs=25.8

Q ss_pred             HhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         24 ECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        24 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.++++ |.|.+|++.|.....|..|+++|.
T Consensus         4 h~~~~~-~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elr_A            4 GSSGKT-HLCDMCGKKFKSKGTLKSHKLLHT   33 (36)
T ss_dssp             CCCCSS-CBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCCCCC-eecCcCCCCcCchHHHHHHHHHhc
Confidence            456666 999999999999999999998875

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=1e-11  Score=41.34  Aligned_cols=31  Identities=19%  Similarity=0.446  Sum_probs=26.8

Q ss_pred             HHhCCCCCccCCCCCcccccc-hHHHHHHHhhc
Q psy12023         23 FECGQEPKYQCPQCPYRAKQN-AHLTTHMAIKH   54 (55)
Q Consensus        23 ~~~~~~~~~~c~~c~~~f~~~-~~l~~h~~~~~   54 (55)
                      +|.++++ |.|+.|++.|... +.|..|+++|.
T Consensus         3 ~h~~~k~-~~C~~C~k~f~~~~~~L~~H~~~H~   34 (37)
T 2elp_A            3 SGSSGRA-MKCPYCDFYFMKNGSDLQRHIWAHE   34 (37)
T ss_dssp             SCCCCCC-EECSSSSCEECSSCHHHHHHHHHHH
T ss_pred             CCCCCCC-eECCCCChhhccCHHHHHHHHHhcC
Confidence            4667777 9999999999999 99999998874

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=9.5e-12  Score=41.20  Aligned_cols=30  Identities=23%  Similarity=0.688  Sum_probs=26.5

Q ss_pred             HhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         24 ECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        24 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.++++ |.|.+|++.|...+.|..|+++|.
T Consensus         4 h~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elq_A            4 GSSGKP-FKCSLCEYATRSKSNLKAHMNRHS   33 (36)
T ss_dssp             SCCCCS-EECSSSSCEESCHHHHHHHHHHSS
T ss_pred             CCCCCC-ccCCCCCchhCCHHHHHHHHHHhc
Confidence            566677 999999999999999999998875

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.19  E-value=1.4e-11  Score=45.43  Aligned_cols=28  Identities=18%  Similarity=0.428  Sum_probs=25.2

Q ss_pred             CCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         26 GQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        26 ~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +|+| |.|.+|++.|...+.|..|+++|.
T Consensus         1 SEKp-y~C~~C~k~F~~~~~L~~H~~~Ht   28 (60)
T 4gzn_C            1 SERP-FFCNFCGKTYRDASGLSRHRRAHL   28 (60)
T ss_dssp             CCCC-EECTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCC-ccCCCCCCEeCCHHHHHHHHHHhC
Confidence            3577 999999999999999999999874

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=5e-12  Score=44.06  Aligned_cols=32  Identities=19%  Similarity=0.300  Sum_probs=28.4

Q ss_pred             HHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         22 KFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        22 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      .+|.++++ |.|..|++.|...+.|..|+++|.
T Consensus         5 ~~h~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2eom_A            5 SSGHGERG-HRCSDCGKFFLQASNFIQHRRIHT   36 (46)
T ss_dssp             CCCCCCSS-CCCSSSCCCCSSHHHHHHHHHHHS
T ss_pred             CCCCCCCC-cCCCCCCCeeCChHHHHHHHHHhC
Confidence            45677777 999999999999999999999875

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.19  E-value=2.6e-11  Score=45.96  Aligned_cols=32  Identities=13%  Similarity=0.247  Sum_probs=17.1

Q ss_pred             CCCCcc--ccccccchhhHHhHH-HHHhCCCCCccC
Q psy12023          1 MFMCDV--CGKGYKYKNGIYRHK-KFECGQEPKYQC   33 (55)
Q Consensus         1 p~~c~~--c~~~~~~~~~~~~~~-~~~~~~~~~~~c   33 (55)
                      ||.|..  |++.|...+.|..|+ ++|++++| +.|
T Consensus        27 PYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP-~~~   61 (73)
T 1x3c_A           27 PYRCVHQGCFAAFTIQQNLILHYQAVHKSDLP-AFS   61 (73)
T ss_dssp             SCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCC-CCC
T ss_pred             CeECCCCCcChhHcCHHHHHHHhhhhCCCCCC-ccc
Confidence            455543  555555555555554 45555555 544

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=1.1e-11  Score=41.03  Aligned_cols=30  Identities=20%  Similarity=0.372  Sum_probs=26.4

Q ss_pred             HhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         24 ECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        24 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.++++ |.|.+|++.|...+.|..|+++|.
T Consensus         4 h~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elv_A            4 GSSGLL-YDCHICERKFKNELDRDRHMLVHG   33 (36)
T ss_dssp             SCCCCC-EECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CCCCCC-eECCCCCCccCCHHHHHHHHHHhc
Confidence            556677 999999999999999999998875

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=1.8e-11  Score=40.52  Aligned_cols=30  Identities=20%  Similarity=0.372  Sum_probs=26.0

Q ss_pred             HhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         24 ECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        24 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +.++++ |.|+.|++.|.....|..|+++|.
T Consensus         4 ~~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2els_A            4 GSSGKI-FTCEYCNKVFKFKHSLQAHLRIHT   33 (36)
T ss_dssp             TSCCCC-EECTTTCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCC-EECCCCCceeCCHHHHHHHHHHhC
Confidence            456666 999999999999999999999875

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.18  E-value=1.2e-11  Score=41.68  Aligned_cols=32  Identities=9%  Similarity=0.321  Sum_probs=29.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQC   33 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c   33 (55)
                      ||.|..|++.|...+.|..|+.+|+++++ |.+
T Consensus         6 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~~   37 (39)
T 1njq_A            6 SYTCSFCKREFRSAQALGGHMNVHRRDRA-RLR   37 (39)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHTTCCSCT-TTT
T ss_pred             ceECCCCCcccCCHHHHHHHHHHcCCCcc-cee
Confidence            68899999999999999999999999887 865

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=99.18  E-value=2.1e-11  Score=37.93  Aligned_cols=26  Identities=27%  Similarity=0.777  Sum_probs=22.8

Q ss_pred             CCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         28 EPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        28 ~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ++ |.|..|++.|...+.|..|+++|.
T Consensus         2 k~-~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            2 KP-FSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CC-EECSSSSCEESSHHHHHHHHHHCC
T ss_pred             cC-ccCCCcChhhCCHHHHHHHHHHcc
Confidence            45 999999999999999999998863

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=9e-12  Score=42.37  Aligned_cols=32  Identities=25%  Similarity=0.692  Sum_probs=29.6

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQC   33 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c   33 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C   41 (41)
T 2ept_A           10 VYECQECGKSFRQKGSLTLHERIHTGSGP-SSG   41 (41)
T ss_dssp             CEECSSSCCEESSHHHHHHHGGGCCCCSC-SCC
T ss_pred             CeECCCCCCCcCCHHHHHHHHHHhCCCCC-cCC
Confidence            68899999999999999999999999887 876

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=5.3e-12  Score=43.97  Aligned_cols=32  Identities=28%  Similarity=0.509  Sum_probs=28.3

Q ss_pred             HHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         22 KFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        22 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ++|.++++ |.|.+|++.|.....|..|+++|.
T Consensus         5 ~~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytt_A            5 SSGEGEKP-YQCSECGKSFSGSYRLTQHWITHT   36 (46)
T ss_dssp             SSCSCCCT-TCCSSSCCCCSSHHHHHHHHTHHH
T ss_pred             CCCCCCCC-eeCCCCCcccCCHHHHHHHHHHcC
Confidence            45778777 999999999999999999998874

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.7e-11  Score=42.34  Aligned_cols=32  Identities=22%  Similarity=0.529  Sum_probs=29.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQC   33 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c   33 (55)
                      ||.|..|++.|...+.|..|+.+|+++++ |.|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~~   43 (44)
T 2epv_A           12 PYECNECGKAFIWKSLLIVHERTHAGVSG-PSS   43 (44)
T ss_dssp             SEECSSSCCEESSHHHHHHHHGGGSSCSC-CCC
T ss_pred             CeECCCCCcccCchHHHHHHHhHhcCCCC-CCC
Confidence            68899999999999999999999999887 865

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=4.5e-12  Score=44.13  Aligned_cols=33  Identities=27%  Similarity=0.545  Sum_probs=29.0

Q ss_pred             HHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         21 KKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        21 ~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +.+|+++++ |.|.+|++.|...+.|..|+++|.
T Consensus         4 ~~~h~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ep0_A            4 GSSGTGEKP-YKCDVCHKSFRYGSSLTVHQRIHT   36 (46)
T ss_dssp             CCSSTTCCS-EECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CCCCCCCCC-eeCcccCcccCChHHHHHHHHHhC
Confidence            345778787 999999999999999999999875

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=1.5e-14  Score=54.60  Aligned_cols=46  Identities=20%  Similarity=0.366  Sum_probs=35.8

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|.....|..       +++ |.|..|++.|...+.|..|+++|+
T Consensus        18 ~~~C~~C~k~f~~~~~l~~-------~~~-~~C~~C~~~f~~~~~l~~H~~~H~   63 (73)
T 2ctu_A           18 SQKCSKCGIIFIRRSTLSR-------RKT-PMCEKCRKDSCQEAALNKDEGNES   63 (73)
T ss_dssp             EEECSSSCCEEECCCCCCC-------SSS-CCCHHHHHTCSCCCSSCCCSSCCC
T ss_pred             CeeCCcccchhCCHHHhCc-------CCC-CCCCCCChhhcCHHHHHHHHHhhc
Confidence            4678888888887777655       455 888888888888888888877764

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=99.16  E-value=1.4e-11  Score=38.48  Aligned_cols=26  Identities=31%  Similarity=0.643  Sum_probs=22.9

Q ss_pred             CCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         28 EPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        28 ~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ++ |.|..|++.|...+.|..|+++|.
T Consensus         2 k~-~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            2 AP-YRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CT-EEETTTTEEESCHHHHHHHHTTCC
T ss_pred             cC-cCCCCCCcccCCHHHHHHHHHhcC
Confidence            45 999999999999999999998763

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=2.6e-11  Score=41.68  Aligned_cols=31  Identities=26%  Similarity=0.502  Sum_probs=27.7

Q ss_pred             HHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         23 FECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        23 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +|+++++ |.|..|++.|...+.|..|+++|.
T Consensus         4 ~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   34 (43)
T 2yrm_A            4 GSSGNGA-FFCNECDCRFSEEASLKRHTLQTH   34 (43)
T ss_dssp             CCSSSCC-BCCSSSCCCBSSHHHHHHHHHHHT
T ss_pred             CcCCCCC-EECCCCCCeeCChHHHHHHHHhhC
Confidence            4677777 999999999999999999999875

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.4e-12  Score=44.28  Aligned_cols=34  Identities=24%  Similarity=0.600  Sum_probs=31.2

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ   35 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~   35 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (45)
T 2epu_A           12 PFECTHCGKSFRAKGNLVTHQRIHTGEKS-GPSSG   45 (45)
T ss_dssp             SEEETTTTEEESSHHHHHHHHTTTSSCCC-CCSCC
T ss_pred             CccCCCCCCccCChHHHHHHHHHhCCCCC-CCCCC
Confidence            57899999999999999999999999888 99864

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.15  E-value=2.9e-11  Score=45.40  Aligned_cols=28  Identities=21%  Similarity=0.481  Sum_probs=17.8

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQE   28 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~   28 (55)
                      ||.|..|++.|.....|..|+++|+++.
T Consensus        13 py~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A           13 ILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            4666666666666666666666666643

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=99.14  E-value=1.8e-11  Score=41.08  Aligned_cols=26  Identities=19%  Similarity=0.358  Sum_probs=22.4

Q ss_pred             hCCCCCccCCCCCcccccchHHHHHHH
Q psy12023         25 CGQEPKYQCPQCPYRAKQNAHLTTHMA   51 (55)
Q Consensus        25 ~~~~~~~~c~~c~~~f~~~~~l~~h~~   51 (55)
                      .++++ |.|.+|+++|.+.++|..|+.
T Consensus         4 ~gekp-~~C~~CgK~F~~~s~L~~H~p   29 (36)
T 1fv5_A            4 LKPAR-FMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             SSCCC-CEETTTTEECSCHHHHHHHHH
T ss_pred             CCccC-eECCCCCCccCCHhHccCcCC
Confidence            46677 999999999999999999974

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.13  E-value=1.7e-11  Score=42.44  Aligned_cols=31  Identities=29%  Similarity=0.694  Sum_probs=27.7

Q ss_pred             HHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         23 FECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        23 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      .|+++++ |.|.+|++.|...+.|..|+++|.
T Consensus         4 ~h~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~   34 (45)
T 2epq_A            4 GSSGEKP-YSCPVCGLRFKRKDRMSYHVRSHD   34 (45)
T ss_dssp             CCSSCCS-SEETTTTEECSCHHHHHHHHHHHS
T ss_pred             CcCCCCC-CcCCCCCcccCCHHHHHHHHHHcc
Confidence            4667777 999999999999999999999875

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.12  E-value=1e-10  Score=46.55  Aligned_cols=44  Identities=18%  Similarity=0.124  Sum_probs=38.5

Q ss_pred             ccccchhhHHhHHHHHhCCCCCccCCCCCccc-ccchHHHHHHHhh
Q psy12023          9 KGYKYKNGIYRHKKFECGQEPKYQCPQCPYRA-KQNAHLTTHMAIK   53 (55)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f-~~~~~l~~h~~~~   53 (55)
                      ..+.....+..++..+.++++ |.|+.|++.| .....|..|+++|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~-~~C~~C~k~F~~~~~~L~~H~~~h   58 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGS-VSCPTCQAVGRKTIEGLKKHMENC   58 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSC-EECTTTCSCEESSHHHHHHHHHHH
T ss_pred             CCCCCchHHHHHHHHhcCCCC-cCCCCCCCCcccCHHHHHHHHHHH
Confidence            356667778899999999887 9999999999 9999999999886

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=99.12  E-value=4.4e-11  Score=37.39  Aligned_cols=26  Identities=27%  Similarity=0.643  Sum_probs=22.9

Q ss_pred             CCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         28 EPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        28 ~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ++ |.|.+|++.|...+.|..|+++|.
T Consensus         2 k~-~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RP-YSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CS-EECSSSCCEESCHHHHHHHHTTSC
T ss_pred             cC-ccCCCCCcccCCHHHHHHHHHhcC
Confidence            45 999999999999999999998875

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.10  E-value=7.5e-12  Score=51.63  Aligned_cols=41  Identities=17%  Similarity=0.320  Sum_probs=33.6

Q ss_pred             ccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         11 YKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      |.....+..|+ .|.++++ |.|..|++.|.....|..|+++|
T Consensus        57 ~~~~~~l~~h~-~h~~~~~-~~C~~C~k~f~~~~~l~~H~~~H   97 (129)
T 2wbt_A           57 LDESSYLYRLL-ASKAISQ-FVCPLCLMPFSSSVSLKQHIRYT   97 (129)
T ss_dssp             TTTHHHHHHHH-HHHHHCS-EECTTTCCEESSHHHHHHHHHHT
T ss_pred             cCCHHHHHHHH-HhCCCCC-eECCCCCcccCCHhHHHHHHHHC
Confidence            34555566666 6888787 99999999999999999999875

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.10  E-value=5.3e-12  Score=48.16  Aligned_cols=37  Identities=27%  Similarity=0.525  Sum_probs=31.7

Q ss_pred             HHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         17 IYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        17 ~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +..|+++|+++++ |.|.+|++.|.....|..|++.+|
T Consensus         3 ~~~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~~h   39 (77)
T 2ct1_A            3 SGSSGRTHSGEKP-YECYICHARFTQSGTMKMHILQKH   39 (77)
T ss_dssp             CCCCCCCCSCCCS-EECTTTCCEESCHHHHHHHHHHHS
T ss_pred             CCccccccCCCCC-eECCCcCchhCCHHHHHHHHHHhc
Confidence            3467788999888 999999999999999999987433

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=99.08  E-value=4.4e-12  Score=41.18  Aligned_cols=29  Identities=21%  Similarity=0.385  Sum_probs=23.1

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEP   29 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~   29 (55)
                      ||.|..|++.|...+.|..|+.+|+++++
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp   30 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVA   30 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSS
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCC
Confidence            67788888888888888888888877665

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.08  E-value=1e-10  Score=45.15  Aligned_cols=39  Identities=23%  Similarity=0.474  Sum_probs=35.7

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCccc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRA   40 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f   40 (55)
                      ||.|..|++.|.....|..|+.+|.++++ +.|..|+..+
T Consensus        47 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~-~~~~~~~~~~   85 (86)
T 1x6h_A           47 AFVCSKCGKTFTRRNTMARHADNCAGPDG-VEGENSGPSS   85 (86)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCCCCS-CCCCCCCCCC
T ss_pred             ceECCCCCChhCCHHHHHHHHHHccCCCC-cccCCCCCCC
Confidence            47899999999999999999999999888 9999998765

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=99.07  E-value=8.6e-11  Score=36.36  Aligned_cols=25  Identities=20%  Similarity=0.517  Sum_probs=18.1

Q ss_pred             CccCCCCCcccccchHHHHHHHhhc
Q psy12023         30 KYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        30 ~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|...+.|..|+++|.
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcC
Confidence            3677777777777777777777664

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=99.07  E-value=1.4e-10  Score=37.79  Aligned_cols=25  Identities=36%  Similarity=0.979  Sum_probs=23.2

Q ss_pred             CccCCCCCcccccchHHHHHHHhhc
Q psy12023         30 KYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        30 ~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|++|++.|...+.|..|+++|.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~   26 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHE   26 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhC
Confidence            3999999999999999999999875

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.07  E-value=1.9e-11  Score=49.21  Aligned_cols=37  Identities=19%  Similarity=0.361  Sum_probs=33.1

Q ss_pred             CCCCccccccccchhhHHhH-HHHHhCCCCCccCCCCCc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRH-KKFECGQEPKYQCPQCPY   38 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~-~~~~~~~~~~~~c~~c~~   38 (55)
                      ||.|..|++.|...+.|..| +.+|+++++ |.|.++..
T Consensus        50 pf~C~~Cgk~F~~~~~L~~H~~r~Htgekp-y~C~~~~~   87 (102)
T 2ghf_A           50 SYVCVECNFLTKRYDALSEHNLKYHPGEEN-FKLTMVKR   87 (102)
T ss_dssp             CEEETTTTEEESSTHHHHTHHHHTSTTCCC-EEEEECCC
T ss_pred             CcCCCCCCcccCCHHHHHHHHHHhcCCCCC-eeCCcccC
Confidence            58899999999999999999 899999988 99987543

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=99.06  E-value=2.4e-10  Score=35.77  Aligned_cols=23  Identities=22%  Similarity=0.518  Sum_probs=13.5

Q ss_pred             ccCCCCCcccccchHHHHHHHhh
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      |.|..|++.|...+.|..|+++|
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~h   25 (29)
T 1ard_A            3 FVCEVCTRAFARQEHLKRHYRSH   25 (29)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHH
T ss_pred             eECCCCCcccCCHHHHHHHHHHh
Confidence            55555666666555565555554

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=99.06  E-value=1.7e-11  Score=42.95  Aligned_cols=36  Identities=14%  Similarity=0.300  Sum_probs=30.1

Q ss_pred             HhHHHHHhCCCCCccCC--CCCcccccchHHHHHHHhhc
Q psy12023         18 YRHKKFECGQEPKYQCP--QCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        18 ~~~~~~~~~~~~~~~c~--~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ..+...|+++++ |.|.  .|++.|...+.|..|+++|.
T Consensus         7 ~~~~~~H~~~k~-~~C~~~~C~k~F~~~~~L~~H~~~H~   44 (47)
T 1ncs_A            7 IDKYVKEMPDKT-FECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             GGGSCEEETTTE-EECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             HHHHhccCCCCC-eECCCCCCCCccCCHHHHHHHHHHcc
Confidence            344456888887 9996  79999999999999999875

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=99.06  E-value=1.7e-10  Score=36.34  Aligned_cols=24  Identities=21%  Similarity=0.445  Sum_probs=19.9

Q ss_pred             ccCCCCCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.|..|++.|.....|..|+++|.
T Consensus         4 ~~C~~C~~~f~~~~~l~~H~~~h~   27 (30)
T 2m0d_A            4 YQCDYCGRSFSDPTSKMRHLETHD   27 (30)
T ss_dssp             EECTTTCCEESCHHHHHHHHHTTC
T ss_pred             ccCCCCCcccCCHHHHHHHHHHhc
Confidence            888888888888888888888764

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.06  E-value=1.4e-10  Score=43.97  Aligned_cols=30  Identities=23%  Similarity=0.439  Sum_probs=25.3

Q ss_pred             HhCCCCCccCCC--CCcccccchHHHHHH-Hhhc
Q psy12023         24 ECGQEPKYQCPQ--CPYRAKQNAHLTTHM-AIKH   54 (55)
Q Consensus        24 ~~~~~~~~~c~~--c~~~f~~~~~l~~h~-~~~~   54 (55)
                      .++++| |.|..  |+++|.+.++|..|+ ++|.
T Consensus        22 ~sGEKP-YkC~~~~CgKaFsr~s~L~~H~rriHT   54 (73)
T 1x3c_A           22 YSPYRP-YRCVHQGCFAAFTIQQNLILHYQAVHK   54 (73)
T ss_dssp             SCSSCS-CBCCSTTCCCBCSSHHHHHHHHHHHSS
T ss_pred             ccCCCC-eECCCCCcChhHcCHHHHHHHhhhhCC
Confidence            467777 99965  999999999999997 5664

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.06  E-value=1.2e-10  Score=38.83  Aligned_cols=29  Identities=24%  Similarity=0.567  Sum_probs=20.0

Q ss_pred             hCCCCCccCC--CCCcccccchHHHHHHHhhc
Q psy12023         25 CGQEPKYQCP--QCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        25 ~~~~~~~~c~--~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +++++ |.|.  .|++.|...+.|..|+++|.
T Consensus         2 ~~~k~-~~C~~~~C~k~f~~~~~L~~H~~~H~   32 (38)
T 1bhi_A            2 SDDKP-FLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TTCCC-EECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCcc-eECCCCCCCcccCCHHHHHHHHHHhC
Confidence            45555 7777  47777777777777777653

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=99.06  E-value=3e-10  Score=35.45  Aligned_cols=23  Identities=30%  Similarity=0.716  Sum_probs=13.4

Q ss_pred             ccCCCCCcccccchHHHHHHHhh
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      |.|..|++.|...+.|..|+++|
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~h   25 (29)
T 2m0e_A            3 HKCPHCDKKFNQVGNLKAHLKIH   25 (29)
T ss_dssp             CCCSSCCCCCCTTTHHHHHHHHH
T ss_pred             CcCCCCCcccCCHHHHHHHHHHh
Confidence            55555666666555565555554

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=99.05  E-value=3.3e-10  Score=35.61  Aligned_cols=24  Identities=42%  Similarity=0.958  Sum_probs=14.3

Q ss_pred             ccCCCCCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.|..|++.|...+.|..|+++|+
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~h~   26 (30)
T 1klr_A            3 YQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             ccCCCCCCccCCHHHHHHHHHHHc
Confidence            556666666666666666655553

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=99.05  E-value=1.1e-10  Score=38.83  Aligned_cols=30  Identities=17%  Similarity=0.300  Sum_probs=25.0

Q ss_pred             HhCCCCCccCC--CCCcccccchHHHHHHHhhc
Q psy12023         24 ECGQEPKYQCP--QCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        24 ~~~~~~~~~c~--~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ++++++ |.|.  .|++.|...+.|..|+++|.
T Consensus         3 ~~~~k~-~~C~~~~C~k~f~~~~~L~~H~~~H~   34 (37)
T 1va1_A            3 PGKKKQ-HICHIQGCGKVYGKTSHLRAHLRWHT   34 (37)
T ss_dssp             SSSCCC-EECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCCCCC-CCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            456666 9998  49999999999999998874

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=1.4e-10  Score=38.42  Aligned_cols=29  Identities=24%  Similarity=0.398  Sum_probs=26.6

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEP   29 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~   29 (55)
                      ||.|..|++.|...+.|..|+.+|+++++
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            9 SYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            68999999999999999999999998764

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.04  E-value=1.6e-10  Score=41.42  Aligned_cols=30  Identities=17%  Similarity=0.277  Sum_probs=27.8

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCc
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKY   31 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~   31 (55)
                      ||.|..|++.|...+.|..|+.+|+++++ |
T Consensus        24 ~~~C~~C~k~f~~~~~L~~H~~~H~~~kp-~   53 (54)
T 1yui_A           24 PATCPICYAVIRQSRNLRRHLELRHFAKP-G   53 (54)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHTTTSC-C
T ss_pred             CccCCCCCcccCCHHHHHHHHHHhccCCC-C
Confidence            57899999999999999999999999876 6

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=99.03  E-value=3.5e-10  Score=35.57  Aligned_cols=26  Identities=15%  Similarity=0.299  Sum_probs=23.9

Q ss_pred             CCCCccccccccchhhHHhHHHHHhC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECG   26 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~   26 (55)
                      ||.|..|++.|...+.|..|+.+|.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~   27 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHcc
Confidence            68999999999999999999998865

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.03  E-value=3.2e-11  Score=47.41  Aligned_cols=36  Identities=8%  Similarity=0.209  Sum_probs=21.9

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCP   37 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~   37 (55)
                      ||.|..|++.|.....|..|+.+|+++++ |.|..+.
T Consensus        25 py~C~~C~k~F~~~~~L~~H~~~Ht~ekp-~~C~~~~   60 (88)
T 1x6f_A           25 TYQCKHCDSKLQSTAELTSHLNIHNEEFQ-KRAKRQE   60 (88)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHHHHH-HHCCCCS
T ss_pred             CCcCCCCCCEeCCHHHHHHHHHHhCCCCC-cccchhh
Confidence            45566666666666666666666666555 6665443

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=99.03  E-value=5.4e-10  Score=35.83  Aligned_cols=24  Identities=25%  Similarity=0.476  Sum_probs=19.4

Q ss_pred             ccCC--CCCcccccchHHHHHHHhhc
Q psy12023         31 YQCP--QCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~--~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.|.  .|++.|...+.|..|+++|.
T Consensus         4 ~~C~~~~C~k~f~~~~~L~~H~~~H~   29 (32)
T 1zfd_A            4 YSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             BCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCcCCCCCCccCCHHHHHHHHHHcc
Confidence            8887  78888888888888887764

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=99.03  E-value=3e-10  Score=35.54  Aligned_cols=26  Identities=23%  Similarity=0.664  Sum_probs=23.7

Q ss_pred             CCCCccccccccchhhHHhHHHHHhC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECG   26 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~   26 (55)
                      ||.|..|++.|...+.|..|+.+|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcC
Confidence            68999999999999999999998864

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.03  E-value=1.5e-10  Score=37.83  Aligned_cols=29  Identities=17%  Similarity=0.343  Sum_probs=26.3

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEP   29 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~   29 (55)
                      ||.|..|++.|...+.|..|+.+|.++++
T Consensus         7 ~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            7 GYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            68899999999999999999999988753

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=99.02  E-value=2.8e-10  Score=35.66  Aligned_cols=24  Identities=38%  Similarity=0.945  Sum_probs=20.3

Q ss_pred             ccCCCCCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.|..|++.|...+.|..|+++|.
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 1rik_A            3 FACPECPKRFMRSDHLTLHILLHE   26 (29)
T ss_dssp             EECSSSSCEESCSHHHHHHHTGGG
T ss_pred             ccCCCCCchhCCHHHHHHHHHHhc
Confidence            888888888888888888888764

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=5.3e-10  Score=43.88  Aligned_cols=32  Identities=22%  Similarity=0.332  Sum_probs=30.2

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP   34 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~   34 (55)
                      |.|..|++.|.....|..|+++|+++++ |.|+
T Consensus        63 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   94 (95)
T 2ej4_A           63 EECPREGKSFKAKYKLVNHIRVHTGEKS-GPSS   94 (95)
T ss_dssp             TTCSSTTCCCSSHHHHHHHHHHHHTCCC-CSSC
T ss_pred             cCCCCCCcccCCHHHHHHHHHhcCCCCC-CCCC
Confidence            7899999999999999999999999988 9986

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.59  E-value=2.7e-11  Score=37.37  Aligned_cols=24  Identities=29%  Similarity=0.611  Sum_probs=20.4

Q ss_pred             CccCCCCCcccccchHHHHHHHhh
Q psy12023         30 KYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        30 ~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      ||.|..|++.|...+.|..|+++|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            388888999998888888888876

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=99.02  E-value=2.9e-10  Score=35.48  Aligned_cols=25  Identities=20%  Similarity=0.398  Sum_probs=22.6

Q ss_pred             CCCCccccccccchhhHHhHHHHHh
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFEC   25 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~   25 (55)
                      ||.|..|++.|.....|..|+.+|.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHI   26 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhc
Confidence            6899999999999999999988763

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=99.01  E-value=2.6e-10  Score=35.66  Aligned_cols=23  Identities=22%  Similarity=0.583  Sum_probs=13.7

Q ss_pred             ccCCCCCcccccchHHHHHHHhh
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      |.|..|++.|.....|..|+++|
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H   25 (29)
T 2m0f_A            3 LKCRECGKQFTTSGNLKRHLRIH   25 (29)
T ss_dssp             EECTTTSCEESCHHHHHHHHHHH
T ss_pred             ccCCCCCCccCChhHHHHHHHHh
Confidence            55666666666666666665554

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=99.01  E-value=1.7e-10  Score=36.19  Aligned_cols=28  Identities=18%  Similarity=0.378  Sum_probs=25.5

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQE   28 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~   28 (55)
                      ||.|..|++.|...+.|..|+.+|.+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            6899999999999999999999998753

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.00  E-value=2.3e-10  Score=37.43  Aligned_cols=29  Identities=24%  Similarity=0.472  Sum_probs=26.3

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEP   29 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~   29 (55)
                      ||.|..|++.|...+.|..|+.+|+++++
T Consensus         7 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            7 PFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            68899999999999999999999998653

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=99.00  E-value=2.2e-10  Score=35.39  Aligned_cols=26  Identities=19%  Similarity=0.613  Sum_probs=23.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECG   26 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~   26 (55)
                      ||.|..|++.|...+.|..|+.+|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            68999999999999999999998876

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=5.8e-10  Score=36.62  Aligned_cols=28  Identities=32%  Similarity=0.704  Sum_probs=25.6

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQE   28 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~   28 (55)
                      ||.|..|++.|.....|..|+.+|++++
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            9 THLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            6899999999999999999999998863

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=6.5e-12  Score=47.22  Aligned_cols=35  Identities=17%  Similarity=0.272  Sum_probs=32.5

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC   36 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c   36 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|++|
T Consensus        39 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~~-~~C~~C   73 (73)
T 2ctu_A           39 TPMCEKCRKDSCQEAALNKDEGNESGKKT-SGPSSG   73 (73)
T ss_dssp             SCCCHHHHHTCSCCCSSCCCSSCCCCCCC-SSCCCC
T ss_pred             CCCCCCCChhhcCHHHHHHHHHhhcCCCC-CCCCCC
Confidence            58899999999999999999999999888 999886

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.98  E-value=1.6e-10  Score=43.97  Aligned_cols=32  Identities=25%  Similarity=0.638  Sum_probs=29.7

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQC   33 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c   33 (55)
                      ||.|..|++.|.....|..|+.+|.++++ |.|
T Consensus        46 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~p-~~C   77 (77)
T 2cot_A           46 PYKCDECGKAFIQRSHLIGHHRVHTGSGP-SSG   77 (77)
T ss_dssp             SEECSSSCCEESSHHHHHHHGGGSCCCCC-CCC
T ss_pred             CeeCCCCCCccCCHHHHHHHHHHhCCCCC-CCC
Confidence            57899999999999999999999999887 876

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=7e-11  Score=41.27  Aligned_cols=32  Identities=22%  Similarity=0.576  Sum_probs=28.1

Q ss_pred             HHHhCCCCCccCC--CCCcccccchHHHHHHHhhc
Q psy12023         22 KFECGQEPKYQCP--QCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        22 ~~~~~~~~~~~c~--~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ++|+++++ |.|.  .|++.|...+.|..|+++|.
T Consensus         5 ~~H~~~k~-~~C~~~~C~k~f~~~~~L~~H~~~H~   38 (48)
T 2ent_A            5 SSGTGEKP-FACTWPGCGWRFSRSDELSRHRRSHS   38 (48)
T ss_dssp             CSSCCCCC-EECCSSSCCCEESSHHHHHHHHTTSC
T ss_pred             CCcCCCCC-eECCCCCCCCccCCHHHHHHHHHHhC
Confidence            45778777 9998  89999999999999999875

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.96  E-value=2.4e-09  Score=40.15  Aligned_cols=30  Identities=17%  Similarity=0.121  Sum_probs=26.5

Q ss_pred             HhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         24 ECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        24 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +.++++ |.|.+|++.|.+.+.|..|+++|.
T Consensus         8 ~~~ekp-y~C~~CgK~F~~~s~L~~H~r~Ht   37 (66)
T 2epp_A            8 LREAGI-LPCGLCGKVFTDANRLRQHEAQHG   37 (66)
T ss_dssp             CCCCCC-CCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             CCCccC-cCCCCCCCccCCHHHHHhhhhhhC
Confidence            345666 999999999999999999999985

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.96  E-value=4.5e-10  Score=35.80  Aligned_cols=24  Identities=21%  Similarity=0.477  Sum_probs=15.5

Q ss_pred             ccCC--CCCcccccchHHHHHHHhhc
Q psy12023         31 YQCP--QCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~--~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.|.  .|++.|...+.|..|+++|.
T Consensus         3 ~~C~~~~C~k~f~~~~~L~~H~~~H~   28 (31)
T 1sp2_A            3 FMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             cCCcCCCCCcccCCHhHHHHHHHHhc
Confidence            6665  66666666666666666653

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=5e-10  Score=37.87  Aligned_cols=27  Identities=19%  Similarity=0.322  Sum_probs=24.9

Q ss_pred             CCCCcc--ccccccchhhHHhHHHHHhCC
Q psy12023          1 MFMCDV--CGKGYKYKNGIYRHKKFECGQ   27 (55)
Q Consensus         1 p~~c~~--c~~~~~~~~~~~~~~~~~~~~   27 (55)
                      ||.|..  |++.|...+.|..|+++|+++
T Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            9 LLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            688986  999999999999999999885

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.95  E-value=4.9e-10  Score=34.98  Aligned_cols=24  Identities=25%  Similarity=0.631  Sum_probs=21.6

Q ss_pred             CCCCccccccccchhhHHhHHHHH
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFE   24 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~   24 (55)
                      ||.|..|++.|.....|..|+.+|
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H   25 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIH   25 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHHHh
Confidence            688999999999999999998764

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.95  E-value=8.8e-10  Score=35.10  Aligned_cols=26  Identities=38%  Similarity=0.852  Sum_probs=23.5

Q ss_pred             CCCCc--cccccccchhhHHhHHHHHhC
Q psy12023          1 MFMCD--VCGKGYKYKNGIYRHKKFECG   26 (55)
Q Consensus         1 p~~c~--~c~~~~~~~~~~~~~~~~~~~   26 (55)
                      ||.|.  .|++.|...+.|..|+.+|++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~   29 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcC
Confidence            68898  999999999999999988865

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=98.48  E-value=8.8e-11  Score=37.10  Aligned_cols=24  Identities=25%  Similarity=0.549  Sum_probs=18.4

Q ss_pred             ccCCCCCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.|..|++.|...+.|..|+++|+
T Consensus         4 ~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            4 YVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            778788888887777877777664

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.93  E-value=8.2e-10  Score=36.72  Aligned_cols=30  Identities=20%  Similarity=0.453  Sum_probs=27.1

Q ss_pred             CCCCc--cccccccchhhHHhHHHHHhCCCCCc
Q psy12023          1 MFMCD--VCGKGYKYKNGIYRHKKFECGQEPKY   31 (55)
Q Consensus         1 p~~c~--~c~~~~~~~~~~~~~~~~~~~~~~~~   31 (55)
                      ||.|.  .|++.|...+.|..|+.+|+++++ |
T Consensus         6 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~-~   37 (38)
T 1bhi_A            6 PFLCTAPGCGQRFTNEDHLAVHKHKHEMTLK-F   37 (38)
T ss_dssp             CEECCCTTTCCEESSHHHHHHHHHHHHTTTT-T
T ss_pred             ceECCCCCCCcccCCHHHHHHHHHHhCCCCC-C
Confidence            57899  599999999999999999999876 5

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.93  E-value=3.9e-10  Score=35.44  Aligned_cols=28  Identities=21%  Similarity=0.527  Sum_probs=25.2

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQE   28 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~   28 (55)
                      ||.|..|++.|.....|..|+.+|.+++
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            6889999999999999999999988753

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.47  E-value=9.6e-11  Score=36.86  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=14.9

Q ss_pred             ccCCCCCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.|..|++.|...+.|..|+++|.
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2lvt_A            3 CQCVMCGKAFTQASSLIAHVRQHT   26 (29)
Confidence            566666666666666666665543

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=7e-10  Score=36.41  Aligned_cols=28  Identities=18%  Similarity=0.398  Sum_probs=25.5

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQE   28 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~   28 (55)
                      ||.|..|++.|.....|..|+.+|.+++
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            9 PYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            6889999999999999999999998853

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.93  E-value=1.1e-09  Score=35.11  Aligned_cols=28  Identities=29%  Similarity=0.576  Sum_probs=25.4

Q ss_pred             CCCCc--cccccccchhhHHhHHHHHhCCC
Q psy12023          1 MFMCD--VCGKGYKYKNGIYRHKKFECGQE   28 (55)
Q Consensus         1 p~~c~--~c~~~~~~~~~~~~~~~~~~~~~   28 (55)
                      ||.|.  .|++.|...+.|..|+.+|++++
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            68899  89999999999999999998853

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=4e-10  Score=42.93  Aligned_cols=30  Identities=27%  Similarity=0.493  Sum_probs=27.0

Q ss_pred             HhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         24 ECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        24 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+++++ |.|.+|++.|.....|..|+++|+
T Consensus         2 h~~~k~-~~C~~C~k~f~~~~~L~~H~~~h~   31 (78)
T 2d9h_A            2 SSGSSG-LQCEICGFTCRQKASLNWHQRKHA   31 (78)
T ss_dssp             CCSCCC-EECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCCCcC-eECCCCCCeeCCHHHHHHHHHHhh
Confidence            567777 999999999999999999999874

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=6.4e-10  Score=36.59  Aligned_cols=28  Identities=25%  Similarity=0.753  Sum_probs=25.5

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQE   28 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~   28 (55)
                      ||.|..|++.|.....|..|+.+|.+++
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            9 IFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            6889999999999999999999998753

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.46  E-value=1.1e-10  Score=36.75  Aligned_cols=24  Identities=21%  Similarity=0.535  Sum_probs=21.6

Q ss_pred             CCCCccccccccchhhHHhHHHHH
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFE   24 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~   24 (55)
                      ||.|..|++.|...+.|..|+.+|
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H   25 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQH   25 (29)
Confidence            689999999999999999998765

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=8.7e-10  Score=36.46  Aligned_cols=28  Identities=18%  Similarity=0.293  Sum_probs=25.5

Q ss_pred             CCCCccccccccch-hhHHhHHHHHhCCC
Q psy12023          1 MFMCDVCGKGYKYK-NGIYRHKKFECGQE   28 (55)
Q Consensus         1 p~~c~~c~~~~~~~-~~~~~~~~~~~~~~   28 (55)
                      ||.|..|++.|... +.|..|+.+|++++
T Consensus         9 ~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            9 AMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            68899999999999 99999999998863

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.90  E-value=9.7e-10  Score=41.32  Aligned_cols=32  Identities=22%  Similarity=0.561  Sum_probs=28.6

Q ss_pred             HHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         22 KFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        22 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ++|.++++ |.|.+|++.|.....|..|+++|+
T Consensus         7 ~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~h~   38 (72)
T 1x6e_A            7 GIHSGEKP-YGCVECGKAFSRSSILVQHQRVHT   38 (72)
T ss_dssp             CTTTTCCC-EECSSSCCEESSHHHHHHHHHGGG
T ss_pred             cccCCCCC-ccCCCCCCccCCHHHHHHHHHhcC
Confidence            45778787 999999999999999999999875

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.90  E-value=3.9e-10  Score=39.48  Aligned_cols=30  Identities=17%  Similarity=0.233  Sum_probs=26.1

Q ss_pred             HhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         24 ECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        24 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +.++++ |.|.+|++.|.....|..|+++|.
T Consensus         7 ~~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~   36 (48)
T 2epr_A            7 GRTRKQ-VACEICGKIFRDVYHLNRHKLSHS   36 (48)
T ss_dssp             CCCCCS-EEETTTTEEESSHHHHHHHGGGSC
T ss_pred             CCCCcC-eeCCCCCcccCCHHHHHHHHHhcC
Confidence            345566 999999999999999999999875

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.89  E-value=6.8e-10  Score=34.97  Aligned_cols=23  Identities=26%  Similarity=0.492  Sum_probs=15.9

Q ss_pred             ccCCCCCcccccchHHHHH-HHhh
Q psy12023         31 YQCPQCPYRAKQNAHLTTH-MAIK   53 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h-~~~~   53 (55)
                      |.|..|++.|...+.|..| +++|
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~~H   26 (30)
T 1paa_A            3 YACGLCNRAFTRRDLLIRHAQKIH   26 (30)
T ss_dssp             SBCTTTCCBCSSSHHHHHHHTTTS
T ss_pred             cCCcccCcccCChHHHHHHHHHHc
Confidence            6777777777777777777 4554

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=5.1e-10  Score=36.83  Aligned_cols=27  Identities=19%  Similarity=0.488  Sum_probs=24.9

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQ   27 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~   27 (55)
                      ||.|..|++.|...+.|..|+.+|+++
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            9 LYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            688999999999999999999998875

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=7.7e-10  Score=36.38  Aligned_cols=28  Identities=18%  Similarity=0.407  Sum_probs=25.3

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQE   28 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~   28 (55)
                      ||.|..|++.|.....|..|+.+|++++
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            9 PFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            6889999999999999999999988753

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.89  E-value=1.5e-09  Score=34.15  Aligned_cols=26  Identities=23%  Similarity=0.791  Sum_probs=22.6

Q ss_pred             CCCCccccccccchhhHHhH-HHHHhC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRH-KKFECG   26 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~-~~~~~~   26 (55)
                      ||.|..|++.|...+.|..| +.+|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccC
Confidence            68999999999999999999 666654

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=98.89  E-value=2.2e-10  Score=42.37  Aligned_cols=32  Identities=19%  Similarity=0.414  Sum_probs=27.5

Q ss_pred             HHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         22 KFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        22 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      .+|+++++ |.|+.|++.|.....|..|++.+|
T Consensus         3 ~~h~~~k~-~~C~~C~k~f~~~~~l~~H~~~~H   34 (66)
T 2drp_A            3 FTKEGEHT-YRCKVCSRVYTHISNFCRHYVTSH   34 (66)
T ss_dssp             CEEEETTE-EECTTTCCEESSHHHHHHHHHHHS
T ss_pred             cccCCCcc-eECCCCcchhCCHHHHHHHHHHHc
Confidence            35677777 999999999999999999998743

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.88  E-value=1.3e-09  Score=33.95  Aligned_cols=24  Identities=25%  Similarity=0.526  Sum_probs=20.8

Q ss_pred             ccCC--CCCcccccchHHHHHHHhhc
Q psy12023         31 YQCP--QCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~--~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.|.  .|++.|...+.|..|+++|.
T Consensus         3 ~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            3 YVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             EEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            8888  89999999999999988875

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.87  E-value=2.2e-09  Score=35.39  Aligned_cols=27  Identities=19%  Similarity=0.386  Sum_probs=24.7

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQ   27 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~   27 (55)
                      ||.|..|++.|.....|..|+.+|.++
T Consensus        11 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A           11 PFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CccCCCCCcccCcHHHHHHHHHHhccC
Confidence            689999999999999999999988763

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=98.37  E-value=2.6e-10  Score=35.95  Aligned_cols=27  Identities=19%  Similarity=0.573  Sum_probs=24.7

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQ   27 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~   27 (55)
                      ||.|..|++.|.....|..|+.+|.++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            689999999999999999999998875

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.86  E-value=6.9e-10  Score=37.13  Aligned_cols=27  Identities=30%  Similarity=0.750  Sum_probs=23.7

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQ   35 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~   35 (55)
                      ||.|..|++.|...+.|..|+       + |.|..
T Consensus         8 p~~C~~CgK~F~~~s~L~~H~-------p-y~C~~   34 (36)
T 1fv5_A            8 RFMCLPCGIAFSSPSTLEAHQ-------A-YYCSH   34 (36)
T ss_dssp             CCEETTTTEECSCHHHHHHHH-------H-HTSTT
T ss_pred             CeECCCCCCccCCHhHccCcC-------C-eECcC
Confidence            789999999999999999997       4 87754

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.84  E-value=1.8e-10  Score=45.25  Aligned_cols=34  Identities=26%  Similarity=0.527  Sum_probs=29.4

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +..+|+++++ |.|.+|++.|...+.|..|+++|.
T Consensus        16 ~~~~H~~~kp-y~C~~C~k~F~~~~~L~~H~~~Ht   49 (88)
T 1x6f_A           16 GNGPRLQNST-YQCKHCDSKLQSTAELTSHLNIHN   49 (88)
T ss_dssp             CCCSCCCCSC-EECSSSCCEESSHHHHHHHHHHHH
T ss_pred             cccccCCCCC-CcCCCCCCEeCCHHHHHHHHHHhC
Confidence            3456788887 999999999999999999998874

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.84  E-value=1.7e-09  Score=40.77  Aligned_cols=29  Identities=21%  Similarity=0.758  Sum_probs=27.0

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEP   29 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~   29 (55)
                      ||.|..|++.|.....|..|+.+|.++++
T Consensus        45 ~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   73 (74)
T 2lce_A           45 PYRCNICGAQFNRPANLKTHTRIHSGEKP   73 (74)
T ss_dssp             SEECTTTCCEESCHHHHHHHHHHHCCSCC
T ss_pred             CEECCCCCchhCCHHHHHHHHHhcCCCCC
Confidence            57899999999999999999999999876

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.83  E-value=1.6e-09  Score=40.51  Aligned_cols=30  Identities=27%  Similarity=0.575  Sum_probs=26.4

Q ss_pred             HhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         24 ECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        24 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +.++++ |.|.+|++.|.....|..|+++|+
T Consensus         4 ~~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~   33 (70)
T 1x5w_A            4 GSSGHP-EKCSECSYSCSSKAALRIHERIHC   33 (70)
T ss_dssp             CCCCCS-EECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CCCCCC-eECCCCCcccCCHHHHHHHHHHcC
Confidence            456666 999999999999999999999875

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.81  E-value=9.5e-10  Score=34.16  Aligned_cols=26  Identities=31%  Similarity=0.749  Sum_probs=23.1

Q ss_pred             CCCCccccccccchhhHHhHHHHHhC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECG   26 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~   26 (55)
                      ||.|..|++.|...+.|..|+.+|++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CccCCCCCcccCCHHHHHHHHHhcCC
Confidence            68899999999999999999887753

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.81  E-value=2.6e-09  Score=38.19  Aligned_cols=30  Identities=23%  Similarity=0.523  Sum_probs=25.7

Q ss_pred             HhCCCCCccCCCCCcccccchHHHHHHH-hhc
Q psy12023         24 ECGQEPKYQCPQCPYRAKQNAHLTTHMA-IKH   54 (55)
Q Consensus        24 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~-~~~   54 (55)
                      +.++++ |.|++|++.|.....|..|++ +|.
T Consensus         7 ~~~~k~-~~C~~C~k~f~~~~~L~~H~~~~H~   37 (54)
T 2eps_A            7 GSVGKP-YICQSCGKGFSRPDHLNGHIKQVHT   37 (54)
T ss_dssp             CCSSCC-EECSSSCCEESSHHHHHHHHHHTSC
T ss_pred             CCCCCC-eECCCCCcccCCHHHHHHHHHHhcC
Confidence            456676 999999999999999999987 664

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.80  E-value=1.7e-09  Score=33.35  Aligned_cols=25  Identities=16%  Similarity=0.396  Sum_probs=22.5

Q ss_pred             CCCCccccccccchhhHHhHHHHHh
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFEC   25 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~   25 (55)
                      ||.|..|++.|...+.|..|+.+|+
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CccCCCcChhhCCHHHHHHHHHHcc
Confidence            6889999999999999999998763

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.80  E-value=7.6e-11  Score=38.13  Aligned_cols=25  Identities=28%  Similarity=0.737  Sum_probs=22.7

Q ss_pred             CccCCCCCcccccchHHHHHHHhhc
Q psy12023         30 KYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        30 ~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|...+.|..|+++|.
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~   26 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAF   26 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSS
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHc
Confidence            3999999999999999999998874

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.80  E-value=4.2e-09  Score=34.85  Aligned_cols=28  Identities=25%  Similarity=0.612  Sum_probs=24.9

Q ss_pred             CCCCc--cccccccchhhHHhHHHHHhCCC
Q psy12023          1 MFMCD--VCGKGYKYKNGIYRHKKFECGQE   28 (55)
Q Consensus         1 p~~c~--~c~~~~~~~~~~~~~~~~~~~~~   28 (55)
                      ||.|.  .|++.|...+.|..|+.+|++++
T Consensus         8 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            8 QHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            57898  49999999999999999999863

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=98.80  E-value=3.3e-09  Score=38.05  Aligned_cols=27  Identities=19%  Similarity=0.338  Sum_probs=22.6

Q ss_pred             CCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         27 QEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        27 ~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +++ |.|..|++.|.....|..|+++|+
T Consensus         2 ~~~-~~C~~C~~~f~~~~~l~~H~~~h~   28 (57)
T 3uk3_C            2 SSS-RECSYCGKFFRSNYYLNIHLRTHT   28 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHH
T ss_pred             CCC-ccCCCCcchhCChHHHHHHHHHcC
Confidence            456 999999999999999999999874

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.80  E-value=2.9e-08  Score=36.93  Aligned_cols=52  Identities=17%  Similarity=0.351  Sum_probs=42.8

Q ss_pred             CCccccccccchhhHHhHHH-HHhCCC-----CCccCC--CCCcccccchHHHHHHHhhc
Q psy12023          3 MCDVCGKGYKYKNGIYRHKK-FECGQE-----PKYQCP--QCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~~~-~~~~~~-----~~~~c~--~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ++..|++.|.+...|..|+. .|.+.+     .+|.|.  .|+..+.....|..|++..|
T Consensus         5 ~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            5 KWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             eeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            34569999999999999984 787654     138996  89999888899999999876

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.24  E-value=8.5e-10  Score=33.79  Aligned_cols=25  Identities=20%  Similarity=0.575  Sum_probs=22.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHh
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFEC   25 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~   25 (55)
                      ||.|..|++.|...+.|..|+++|+
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            6899999999999999999988763

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.76  E-value=4e-09  Score=41.22  Aligned_cols=31  Identities=19%  Similarity=0.380  Sum_probs=26.6

Q ss_pred             HHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         23 FECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        23 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ++.+.++ |.|++|++.|.....|..|+++|+
T Consensus        22 ~~~~~~~-h~C~~Cgk~F~~~~~L~~H~~~H~   52 (85)
T 2lv2_A           22 LSASAEC-HLCPVCGESFASKGAQERHLRLLH   52 (85)
T ss_dssp             SCCCCTT-EECTTSCCEESSHHHHHHHHHTTS
T ss_pred             CCCCCCC-EECCCCCCCcCcHHHHhhhhhhcc
Confidence            3445566 999999999999999999999986

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.72  E-value=1.3e-09  Score=33.71  Aligned_cols=24  Identities=17%  Similarity=0.390  Sum_probs=21.8

Q ss_pred             CCCCccccccccchhhHHhHHHHH
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFE   24 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~   24 (55)
                      ||.|..|++.|...+.|..|+.+|
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCCCCCCcccCCHHHHHHHHHhc
Confidence            689999999999999999998765

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.72  E-value=2.9e-09  Score=37.32  Aligned_cols=29  Identities=34%  Similarity=0.731  Sum_probs=24.7

Q ss_pred             CCCCccccccccchhhHHhHHH-HHhCCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKK-FECGQEP   29 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~-~~~~~~~   29 (55)
                      ||.|..|++.|.....|..|+. +|+++..
T Consensus         7 p~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            7 PYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            6899999999999999999999 9998765

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=4.2e-09  Score=34.85  Aligned_cols=27  Identities=22%  Similarity=0.399  Sum_probs=24.2

Q ss_pred             CCCCccccccccchhhHHhH-HHHHhCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRH-KKFECGQ   27 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~-~~~~~~~   27 (55)
                      ||.|..|++.|...+.|..| +.+|+++
T Consensus         9 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            9 LYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             EEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            58899999999999999999 8888764

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.66  E-value=2.2e-08  Score=35.81  Aligned_cols=25  Identities=32%  Similarity=0.673  Sum_probs=23.1

Q ss_pred             CccCCCCCcccccchHHHHHHHhhc
Q psy12023         30 KYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        30 ~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|.....|..|+++|+
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~   25 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHT   25 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcC
Confidence            4899999999999999999999875

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.66  E-value=7.1e-09  Score=32.19  Aligned_cols=26  Identities=31%  Similarity=0.899  Sum_probs=23.3

Q ss_pred             CCCCc--cccccccchhhHHhHHHHHhC
Q psy12023          1 MFMCD--VCGKGYKYKNGIYRHKKFECG   26 (55)
Q Consensus         1 p~~c~--~c~~~~~~~~~~~~~~~~~~~   26 (55)
                      ||.|.  .|++.|...+.|..|+++|++
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            57899  999999999999999998764

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.63  E-value=3.2e-08  Score=35.76  Aligned_cols=25  Identities=20%  Similarity=0.474  Sum_probs=23.0

Q ss_pred             CccCCCCCcccccchHHHHHHHhhc
Q psy12023         30 KYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        30 ~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|..|++.|.....|..|+++|+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~   26 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHT   26 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTT
T ss_pred             cCcCCCCccccCCHHHHHHHHHHhC
Confidence            3999999999999999999999875

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.56  E-value=1.8e-08  Score=35.01  Aligned_cols=28  Identities=25%  Similarity=0.405  Sum_probs=24.7

Q ss_pred             CCCCc--cccccccchhhHHhHHHHHhCCC
Q psy12023          1 MFMCD--VCGKGYKYKNGIYRHKKFECGQE   28 (55)
Q Consensus         1 p~~c~--~c~~~~~~~~~~~~~~~~~~~~~   28 (55)
                      ||.|.  .|++.|...+.|..|+.+|++++
T Consensus        18 ~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           18 TFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             CeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            57895  79999999999999999998863

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.56  E-value=1.3e-09  Score=40.11  Aligned_cols=29  Identities=10%  Similarity=0.287  Sum_probs=24.5

Q ss_pred             HhHHHHHhCCCCCccCCCCCcccccchHHH
Q psy12023         18 YRHKKFECGQEPKYQCPQCPYRAKQNAHLT   47 (55)
Q Consensus        18 ~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~   47 (55)
                      ..|+.+|+++++ |.|+.|++.|...+.|.
T Consensus         3 ~~h~~~H~~~k~-~~C~~C~k~F~~~~~l~   31 (62)
T 1vd4_A            3 ETDERDSTNRAS-FKCPVCSSTFTDLEANQ   31 (62)
T ss_dssp             CCCSSSCCSSSE-EECSSSCCEEEHHHHHH
T ss_pred             hhHHHHcCCCCC-ccCCCCCchhccHHHhH
Confidence            456778889887 99999999999888775

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.33  E-value=1.8e-07  Score=34.99  Aligned_cols=31  Identities=32%  Similarity=0.650  Sum_probs=26.1

Q ss_pred             HHhCCCCCccCC--CCCcccccchHHHHHHHhhc
Q psy12023         23 FECGQEPKYQCP--QCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        23 ~~~~~~~~~~c~--~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ++.++++ |.|.  .|++.|.....|..|+++|.
T Consensus        13 ~~~~~~~-~~C~~~~C~k~f~~~~~l~~H~~~h~   45 (73)
T 1f2i_G           13 VVPKMRP-YACPVESCDRRFSRSDELTRHIRIHT   45 (73)
T ss_dssp             CCCCCCC-EECSSTTBCCEESSHHHHHHHHHHHH
T ss_pred             cCCCCCc-cCCcCCCCCCccCCHHHHHHHHHhhC
Confidence            4556666 9997  69999999999999998874

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=98.28  E-value=1.1e-07  Score=39.55  Aligned_cols=31  Identities=23%  Similarity=0.240  Sum_probs=26.4

Q ss_pred             HHHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         22 KFECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        22 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      ..++|+++ |.|..|++.|.+.+.|..|++..
T Consensus        43 ed~tGekp-fyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           43 PDLPGGGL-HRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSSGGGGC-SEETTTTEECSSHHHHHHHTTCH
T ss_pred             ccCCCCcc-eEcccCcchhCCHHHHHHHHhhh
Confidence            34677777 99999999999999999997753

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.18  E-value=4.3e-07  Score=33.44  Aligned_cols=29  Identities=24%  Similarity=0.441  Sum_probs=25.0

Q ss_pred             CCCCc-cccccccchhhHHhHHHHHhCCCC
Q psy12023          1 MFMCD-VCGKGYKYKNGIYRHKKFECGQEP   29 (55)
Q Consensus         1 p~~c~-~c~~~~~~~~~~~~~~~~~~~~~~   29 (55)
                      ||.|. .|++.|...+.|..|+++|....+
T Consensus        36 p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A           36 PVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             EEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            57899 999999999999999998876543

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.17  E-value=1.6e-06  Score=32.24  Aligned_cols=28  Identities=18%  Similarity=0.331  Sum_probs=24.3

Q ss_pred             CCCCCccCCC--CCcccccchHHHHHHHhhc
Q psy12023         26 GQEPKYQCPQ--CPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        26 ~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~   54 (55)
                      ..++ |.|..  |++.|.....|..|+++|.
T Consensus        14 ~~~~-~~C~~~~C~k~f~~~~~L~~H~~~H~   43 (72)
T 2epa_A           14 RIRS-HICSHPGCGKTYFKSSHLKAHTRTHT   43 (72)
T ss_dssp             CCCC-EECSSTTTCCEESSHHHHHHHHHHHS
T ss_pred             ccCc-eeCCCCCCccccCCHHHHHHHHHhcC
Confidence            3455 99988  9999999999999999875

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.95  E-value=4.6e-07  Score=34.46  Aligned_cols=33  Identities=24%  Similarity=0.421  Sum_probs=27.7

Q ss_pred             hHHhHHHHHhCCCCCccCCCCCcccccchHHHHHH
Q psy12023         16 GIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHM   50 (55)
Q Consensus        16 ~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~   50 (55)
                      .|..|+.++.+.++ +.|..|++.|. ...|..|+
T Consensus         4 ~L~~H~~~~c~~r~-~~C~~C~~~~~-~~~L~~H~   36 (75)
T 2d9k_A            4 GSSGHEETECPLRL-AVCQHCDLELS-ILKLKEHE   36 (75)
T ss_dssp             CCSCCCCCCCCCCC-EECSSSCCEEC-HHHHHHHH
T ss_pred             HHHhhCcccCCCcc-cCCcccChHhh-HHHHHHHH
Confidence            46677777888887 99999999995 78899887

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.67  E-value=4.2e-05  Score=26.78  Aligned_cols=21  Identities=29%  Similarity=0.613  Sum_probs=16.9

Q ss_pred             ccCCCCCcccccchHHHHHHH
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMA   51 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~   51 (55)
                      |.|+.|+..|+....|+.|++
T Consensus        13 ~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           13 KICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             CCCTTTCCCCSSHHHHHHHHH
T ss_pred             eeCCcccccccchHHHHhhhh
Confidence            778888888888888888876

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.58  E-value=0.00012  Score=30.55  Aligned_cols=50  Identities=16%  Similarity=0.248  Sum_probs=37.7

Q ss_pred             CCCCccccccccchhhHHhHHH--HH-------------------------------hCCCCCccCCCCCcccccchHHH
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKK--FE-------------------------------CGQEPKYQCPQCPYRAKQNAHLT   47 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~--~~-------------------------------~~~~~~~~c~~c~~~f~~~~~l~   47 (55)
                      ++.|..|...|.+.+.+..|..  .|                               .+... |.|.+|.+.|.....+.
T Consensus        32 ~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~C~~C~~~f~s~~~~~  110 (127)
T 1zu1_A           32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRS-KCCPVCNMTFSSPVVAE  110 (127)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTT-TEETTTTEECSSHHHHH
T ss_pred             CCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCC-eEcCCCCCEeCCHHHHH
Confidence            3568999999988888877762  22                               01223 78999999999999999


Q ss_pred             HHHH
Q psy12023         48 THMA   51 (55)
Q Consensus        48 ~h~~   51 (55)
                      .|..
T Consensus       111 ~H~~  114 (127)
T 1zu1_A          111 SHYI  114 (127)
T ss_dssp             HHHT
T ss_pred             HHHC
Confidence            9865

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.35  E-value=0.00046  Score=24.19  Aligned_cols=28  Identities=14%  Similarity=0.459  Sum_probs=23.3

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQE   28 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~   28 (55)
                      ++.|+.|+..|.....|..|+.-.-++.
T Consensus        12 ~~~CPrCn~~f~~~~sLr~HmkycCp~~   39 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMCYCCPEM   39 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHHHHCTTT
T ss_pred             ceeCCcccccccchHHHHhhhhhcCcch
Confidence            4789999999999999999998555543

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.07  E-value=0.00012  Score=30.57  Aligned_cols=23  Identities=13%  Similarity=0.343  Sum_probs=20.7

Q ss_pred             CCCCccccccccchhhHHhHHHH
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKF   23 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~   23 (55)
                      ||.|..|++.|.+.+.|..|+++
T Consensus        50 pfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           50 LHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTC
T ss_pred             ceEcccCcchhCCHHHHHHHHhh
Confidence            68899999999999999999773

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=97.01  E-value=0.00075  Score=22.10  Aligned_cols=24  Identities=29%  Similarity=0.566  Sum_probs=21.0

Q ss_pred             ccCCCCCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.|++|.+.|.....|..|-...|
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~~H   29 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEAVH   29 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHT
T ss_pred             cCCcHHHHHcCCHHHHHHHHHhcc
Confidence            899999999999999999976655

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=95.84  E-value=0.005  Score=24.25  Aligned_cols=21  Identities=29%  Similarity=0.547  Sum_probs=17.2

Q ss_pred             ccCCCCCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ..|-+||+.|.   .|.+|++.+|
T Consensus        22 iiClecGK~fK---~LkRHL~~~h   42 (87)
T 2jsp_A           22 IVCLECGGSFK---SLKRHLTTHH   42 (87)
T ss_dssp             EECTBTCCEES---BHHHHHHHTT
T ss_pred             eEecccchhhH---HHHHHHHHcc
Confidence            67999999987   4779998865

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=95.67  E-value=0.0063  Score=24.76  Aligned_cols=11  Identities=27%  Similarity=0.618  Sum_probs=6.2

Q ss_pred             CCCCccccccc
Q psy12023          1 MFMCDVCGKGY   11 (55)
Q Consensus         1 p~~c~~c~~~~   11 (55)
                      |+.|..||..|
T Consensus        67 p~~C~~CG~~F   77 (105)
T 2gmg_A           67 PAQCRKCGFVF   77 (105)
T ss_dssp             CCBBTTTCCBC
T ss_pred             CcChhhCcCee
Confidence            35566666555

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=95.41  E-value=0.019  Score=20.68  Aligned_cols=20  Identities=15%  Similarity=0.464  Sum_probs=17.7

Q ss_pred             ccCCCCCcccccchHHHHHH
Q psy12023         31 YQCPQCPYRAKQNAHLTTHM   50 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~   50 (55)
                      -+|..|+..+....+++.|.
T Consensus        14 ~eC~lC~vkYs~r~slqDHI   33 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHI   33 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHH
T ss_pred             ccccccCcccccccchhhhh
Confidence            58999999999998898885

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=94.95  E-value=0.028  Score=19.64  Aligned_cols=29  Identities=28%  Similarity=0.714  Sum_probs=18.5

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYR   39 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~   39 (55)
                      |.|..||+.|....-         .--|..+|+.||..
T Consensus         4 Y~C~rCg~~fs~~el---------~~lP~IrCpyCGyr   32 (48)
T 4ayb_P            4 YRCGKCWKTFTDEQL---------KVLPGVRCPYCGYK   32 (48)
T ss_dssp             -CCCCTTTTCCCCCS---------CCCSSSCCTTTCCS
T ss_pred             EEeeccCCCccHHHH---------hhCCCcccCccCcE
Confidence            678899998876431         11233788888854

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=94.61  E-value=0.025  Score=17.62  Aligned_cols=21  Identities=33%  Similarity=0.858  Sum_probs=17.0

Q ss_pred             ccCCCCCcccccchHHHHHHH
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMA   51 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~   51 (55)
                      +.|++|.........+..|-.
T Consensus         4 ~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            4 FCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             EECTTSSCEESSHHHHHHHHH
T ss_pred             ccCccccccCcChHHHHHHHH
Confidence            789999988888888887743

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.57  E-value=0.037  Score=21.27  Aligned_cols=24  Identities=21%  Similarity=0.386  Sum_probs=19.6

Q ss_pred             ccCCCCCcccc-------cchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAK-------QNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~-------~~~~l~~h~~~~~   54 (55)
                      ..|..|++.+.       .-+.|.+|++..|
T Consensus        29 A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H   59 (76)
T 2djr_A           29 ATCRLCGRQVSRGPGVNVGTTALWKHLKSMH   59 (76)
T ss_dssp             EEESSSCCBCCCCSSCCSSSCHHHHHHHHTT
T ss_pred             EECCCCCCccCCCCCCCCchHHHHHHHHHHC
Confidence            68999999887       3578999988776

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=94.22  E-value=0.019  Score=22.24  Aligned_cols=40  Identities=23%  Similarity=0.390  Sum_probs=27.4

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQN   43 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~   43 (55)
                      |.|+.||..+.- ..+..|...-.+... +.|..|++.|...
T Consensus        11 F~C~~Cgd~lKK-~kv~~H~~~Cr~~~~-~SCIDC~~~F~~~   50 (79)
T 1wjv_A           11 FTCNACGESVKK-IQVEKHVSNCRNCEC-LSCIDCGKDFWGD   50 (79)
T ss_dssp             EEESSSCCEEET-THHHHHHHHCTTCCE-EEETTTTEEEEGG
T ss_pred             EEcCCCCCeeec-ccchhHHhhCCCCCc-EEecccCCeeCCC
Confidence            568889977754 446677554444334 8899999999753

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=93.98  E-value=0.069  Score=23.04  Aligned_cols=47  Identities=19%  Similarity=0.340  Sum_probs=27.8

Q ss_pred             CCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHh
Q psy12023          3 MCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI   52 (55)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~   52 (55)
                      .|..|+..+ ....+..|....-..+. ..|..|+..+... .+..|+.+
T Consensus       112 ~C~~C~~~~-~r~~l~~H~~~~C~~r~-~~C~~C~~~~~~~-~l~~H~~~  158 (170)
T 3hcs_A          112 DCPQCQRPF-QKFHINIHILKDCPRRQ-VSCDNCAASMAFE-DKEIHDQN  158 (170)
T ss_dssp             ECTTTCCEE-EGGGHHHHHHHTCTTCE-EECTTTCCEEEGG-GHHHHHTT
T ss_pred             ECCCCChHH-HHHHHHHHhhhhCCCCC-eECCCCCCccCHH-HHHhHHHh
Confidence            355566655 34456666654444444 6788888776544 46677543

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=93.53  E-value=0.072  Score=24.16  Aligned_cols=23  Identities=17%  Similarity=0.346  Sum_probs=19.2

Q ss_pred             CccCCCCCccccc-chHHHHHHHh
Q psy12023         30 KYQCPQCPYRAKQ-NAHLTTHMAI   52 (55)
Q Consensus        30 ~~~c~~c~~~f~~-~~~l~~h~~~   52 (55)
                      |.+|..|+..|.+ -..|+.|...
T Consensus       169 ~L~C~~C~~~f~n~~~~LK~HL~~  192 (204)
T 3sp4_A          169 DLKCWRCGETFGRHFTKLKAHLQE  192 (204)
T ss_dssp             CCBCTTTCCBCTTCHHHHHHHHHH
T ss_pred             CceeCCCCchhhcccHHHHHHHHH
Confidence            3899999999976 8888988754

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=93.28  E-value=0.097  Score=17.26  Aligned_cols=21  Identities=14%  Similarity=0.249  Sum_probs=14.8

Q ss_pred             ccCCCCCcccccchHHHHHHH
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMA   51 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~   51 (55)
                      +.|..|+-.|+.-.++..|.+
T Consensus         9 ~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            9 KYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             SEETTTTEECSSHHHHHHHHH
T ss_pred             CeeccccceehhhHHHhhhhe
Confidence            677777777777777766654

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=93.12  E-value=0.079  Score=17.00  Aligned_cols=24  Identities=21%  Similarity=0.412  Sum_probs=19.6

Q ss_pred             ccCCCCCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      -.|..|.+.++.-.+|..|.+.-|
T Consensus        10 qhcrfckkkysdvknlikhire~h   33 (37)
T 2elu_A           10 QHCRFCKKKYSDVKNLIKHIRDAH   33 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            468889999998889988887554

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=93.01  E-value=0.043  Score=24.68  Aligned_cols=24  Identities=33%  Similarity=0.796  Sum_probs=15.6

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYR   39 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~   39 (55)
                      |.|..||....             |..| +.|++|+..
T Consensus       172 ~~C~~CG~i~~-------------g~~p-~~CP~C~~~  195 (202)
T 1yuz_A          172 HLCPICGYIHK-------------GEDF-EKCPICFRP  195 (202)
T ss_dssp             EECSSSCCEEE-------------SSCC-SBCTTTCCB
T ss_pred             EEECCCCCEEc-------------CcCC-CCCCCCCCC
Confidence            56888887643             2234 888888753

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=92.42  E-value=0.051  Score=18.87  Aligned_cols=35  Identities=26%  Similarity=0.652  Sum_probs=18.5

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYR   39 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~   39 (55)
                      |.|..||..+.......  ......... +.|++|+..
T Consensus         5 y~C~vCGyvyd~~~Gd~--t~f~~lP~d-w~CP~Cg~~   39 (46)
T 6rxn_A            5 YVCNVCGYEYDPAEHDN--VPFDQLPDD-WCCPVCGVS   39 (46)
T ss_dssp             EEETTTCCEECGGGGTT--CCGGGSCTT-CBCTTTCCB
T ss_pred             EECCCCCeEEeCCcCCC--cchhhCCCC-CcCcCCCCc
Confidence            67888998775332110  000011123 689999864

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=92.41  E-value=0.091  Score=17.60  Aligned_cols=23  Identities=17%  Similarity=0.397  Sum_probs=13.2

Q ss_pred             CCCccccccccchhhHHhHHHHHh
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFEC   25 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~   25 (55)
                      +.|..|++.+.. .....|...|.
T Consensus        10 ~~C~~C~~~i~~-~~~~EH~D~H~   32 (39)
T 2i5o_A           10 VPCEKCGSLVPV-WDMPEHMDYHF   32 (39)
T ss_dssp             EECTTTCCEEEG-GGHHHHHHHHH
T ss_pred             cccccccCcCCc-ccccchhhHHH
Confidence            356777766665 33455655553

>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=92.28  E-value=0.11  Score=19.81  Aligned_cols=11  Identities=18%  Similarity=0.664  Sum_probs=7.6

Q ss_pred             ccCCCCCcccc
Q psy12023         31 YQCPQCPYRAK   41 (55)
Q Consensus        31 ~~c~~c~~~f~   41 (55)
                      ++|..|++.|.
T Consensus        45 W~C~~C~~~~A   55 (72)
T 3jyw_9           45 WTCSCCKKTVA   55 (72)
T ss_dssp             BCCSSSCCCCC
T ss_pred             EECCCCCCEEe
Confidence            67777777664

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=91.61  E-value=0.26  Score=20.63  Aligned_cols=24  Identities=17%  Similarity=0.301  Sum_probs=20.1

Q ss_pred             ccCCCCCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ..|-.|...|.....+-.|++..|
T Consensus        16 ~~CLFCd~~~~s~~~~l~H~k~~H   39 (121)
T 1wir_A           16 TPCLFCDRLFASAEETFSHCKLEH   39 (121)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHSS
T ss_pred             eeEecCCCcccCHHHHHHHHHHhc
Confidence            788888888888888888888665

>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A

Probab=91.45  E-value=0.028  Score=25.03  Aligned_cols=11  Identities=27%  Similarity=0.685  Sum_probs=6.9

Q ss_pred             CCCcccccccc
Q psy12023          2 FMCDVCGKGYK   12 (55)
Q Consensus         2 ~~c~~c~~~~~   12 (55)
                      |.|..||..+.
T Consensus       156 ~~C~~CG~~~~  166 (191)
T 1lko_A          156 WRCRNCGYVHE  166 (191)
T ss_dssp             EEETTTCCEEE
T ss_pred             EEECCCCCEee
Confidence            45777776653

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=90.58  E-value=0.12  Score=22.67  Aligned_cols=23  Identities=30%  Similarity=0.909  Sum_probs=13.6

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPY   38 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~   38 (55)
                      |.|..||....             ++.| -.|++|+.
T Consensus       139 ~~C~~CG~i~~-------------~~~p-~~CP~Cg~  161 (170)
T 3pwf_A          139 YICPICGYTAV-------------DEAP-EYCPVCGA  161 (170)
T ss_dssp             EECTTTCCEEE-------------SCCC-SBCTTTCC
T ss_pred             eEeCCCCCeeC-------------CCCC-CCCCCCCC
Confidence            45777776553             2333 57777774

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=90.53  E-value=0.031  Score=21.84  Aligned_cols=10  Identities=40%  Similarity=1.198  Sum_probs=6.2

Q ss_pred             ccCCCCCccc
Q psy12023         31 YQCPQCPYRA   40 (55)
Q Consensus        31 ~~c~~c~~~f   40 (55)
                      +.|+.|+..|
T Consensus        46 W~C~~Cg~~~   55 (83)
T 1vq8_Z           46 WQCSYCDYKF   55 (83)
T ss_dssp             EEETTTCCEE
T ss_pred             EECCCCCCEe
Confidence            5666666654

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=90.43  E-value=0.28  Score=18.18  Aligned_cols=27  Identities=26%  Similarity=0.721  Sum_probs=16.2

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCccc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRA   40 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f   40 (55)
                      |.|..|+..+....          + .+ .+|..||...
T Consensus        22 Y~C~~Cg~~~~l~~----------~-~~-iRC~~CG~RI   48 (63)
T 3h0g_L           22 YLCADCGARNTIQA----------K-EV-IRCRECGHRV   48 (63)
T ss_dssp             CBCSSSCCBCCCCS----------S-SC-CCCSSSCCCC
T ss_pred             EECCCCCCeeecCC----------C-Cc-eECCCCCcEE
Confidence            66777777664321          1 33 7788887543

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=89.42  E-value=0.18  Score=19.08  Aligned_cols=10  Identities=20%  Similarity=0.926  Sum_probs=4.9

Q ss_pred             CCCccccccc
Q psy12023          2 FMCDVCGKGY   11 (55)
Q Consensus         2 ~~c~~c~~~~   11 (55)
                      |.|..||..|
T Consensus        29 Y~C~~CG~~~   38 (70)
T 1twf_L           29 YICAECSSKL   38 (70)
T ss_dssp             EECSSSCCEE
T ss_pred             EECCCCCCcc
Confidence            3455555544

>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav myristol group, icosahedral virus; HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_C 3k1q_B

Probab=89.27  E-value=0.071  Score=29.55  Aligned_cols=24  Identities=29%  Similarity=0.594  Sum_probs=0.0

Q ss_pred             ccCCCCCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.|.+|...|.....|..|+++-|
T Consensus       117 ~~C~vC~a~F~S~~~L~~H~~ttH  140 (1214)
T 3iyl_X          117 YVCNVCNARFSTMSALSEHLRSDH  140 (1214)
T ss_dssp             ------------------------
T ss_pred             eeehhhhhhcCCHHHHHHHHhhcc
Confidence            999999999999999999966443

>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative C-like transposable element, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6

Probab=89.24  E-value=0.33  Score=18.45  Aligned_cols=24  Identities=21%  Similarity=0.474  Sum_probs=18.9

Q ss_pred             ccCCCCCcccc---cchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAK---QNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~---~~~~l~~h~~~~~   54 (55)
                      ..|..|.+.+.   .-++|.+|++.+|
T Consensus        30 a~Ck~C~~~l~~~g~TSnL~rHL~~~H   56 (73)
T 2ct5_A           30 IYCRICMAQIAYSGNTSNLSYHLEKNH   56 (73)
T ss_dssp             CEETTTTEECCCCSSTHHHHHHHHHSC
T ss_pred             EECCCCCccccCCCChHhHHHHHHHHC
Confidence            67999988754   4578999988776

>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}

Probab=88.46  E-value=0.25  Score=20.32  Aligned_cols=25  Identities=24%  Similarity=0.700  Sum_probs=15.5

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCc-cCCCCCcc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKY-QCPQCPYR   39 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~-~c~~c~~~   39 (55)
                      |.|..||..|...             .+++ .|+.|+..
T Consensus        74 ~~C~~CG~~~e~~-------------~~~~~~CP~Cgs~   99 (119)
T 2kdx_A           74 LECKDCSHVFKPN-------------ALDYGVCEKCHSK   99 (119)
T ss_dssp             EECSSSSCEECSC-------------CSTTCCCSSSSSC
T ss_pred             EEcCCCCCEEeCC-------------CCCCCcCccccCC
Confidence            4677788776531             2226 78888754

>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V

Probab=88.35  E-value=0.089  Score=29.22  Aligned_cols=23  Identities=30%  Similarity=0.501  Sum_probs=0.0

Q ss_pred             ccCCCCCcccccchHHHHHHHhh
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      |.|.+|...|.....|..|+..|
T Consensus       181 y~C~VC~a~F~S~~~L~~HqttH  203 (1275)
T 1ej6_B          181 YQCHVCSAVLFSPLDLDAHVASH  203 (1275)
T ss_dssp             -----------------------
T ss_pred             eehhhhhhhhCCHHHHHHHHHhc
Confidence            89999999999999999998655

>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=88.00  E-value=0.12  Score=20.21  Aligned_cols=10  Identities=30%  Similarity=0.826  Sum_probs=5.4

Q ss_pred             ccCCCCCccc
Q psy12023         31 YQCPQCPYRA   40 (55)
Q Consensus        31 ~~c~~c~~~f   40 (55)
                      +.|..|++.|
T Consensus        54 W~C~kCg~~~   63 (83)
T 3j21_i           54 WQCQKCGATF   63 (83)
T ss_dssp             EEETTTCCEE
T ss_pred             EEcCCCCCEE
Confidence            4555555544

>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2

Probab=86.98  E-value=0.081  Score=19.35  Aligned_cols=23  Identities=17%  Similarity=0.408  Sum_probs=18.6

Q ss_pred             ccCCCCCcccccchHHHHHHHhh
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      |+|..|...|...-.+-.|..+|
T Consensus        31 y~C~~C~~~FC~dCD~fiHe~Lh   53 (59)
T 1z60_A           31 YVCAVCQNVFCVDCDVFVHDSLH   53 (59)
T ss_dssp             ECCTTTTCCBCHHHHHTTTTTSC
T ss_pred             EECCccCcCcccchhHHHHhhcc
Confidence            88999999998877777776655

>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1

Probab=85.26  E-value=0.82  Score=17.12  Aligned_cols=27  Identities=22%  Similarity=0.492  Sum_probs=16.2

Q ss_pred             CCccccccccchhhHHhHHHHHhCCCCCccCCCCCccccc
Q psy12023          3 MCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQ   42 (55)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~   42 (55)
                      .|..|++.|...            .++ ..|..||..|..
T Consensus        13 ~C~~C~~~F~~~------------~Rr-HHCR~CG~v~C~   39 (73)
T 1vfy_A           13 ACMICSKKFSLL------------NRK-HHCRSCGGVFCQ   39 (73)
T ss_dssp             BCTTTCCBCBTT------------BCC-EECTTTCCEECG
T ss_pred             cccCCCCccCCc------------ccc-ccCCCCCEEEcc
Confidence            466677776531            234 677777776644

>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}

Probab=84.93  E-value=0.23  Score=21.44  Aligned_cols=11  Identities=27%  Similarity=1.090  Sum_probs=7.1

Q ss_pred             CCCcccccccc
Q psy12023          2 FMCDVCGKGYK   12 (55)
Q Consensus         2 ~~c~~c~~~~~   12 (55)
                      |.|..||+.|.
T Consensus       133 y~C~~Cg~~~~  143 (165)
T 2lcq_A          133 YVCIGCGRKFS  143 (165)
T ss_dssp             EEESSSCCEES
T ss_pred             EECCCCCCccc
Confidence            45777777664

>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z

Probab=84.93  E-value=0.11  Score=21.56  Aligned_cols=11  Identities=36%  Similarity=1.093  Sum_probs=7.6

Q ss_pred             ccCCCCCcccc
Q psy12023         31 YQCPQCPYRAK   41 (55)
Q Consensus        31 ~~c~~c~~~f~   41 (55)
                      +.|..|++.|.
T Consensus        79 W~C~~Cgk~fA   89 (116)
T 3cc2_Z           79 WQCSYCDYKFT   89 (116)
T ss_dssp             EEETTTCCEEE
T ss_pred             EECCCCCCEEE
Confidence            67777777654

>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1

Probab=84.10  E-value=0.81  Score=20.71  Aligned_cols=23  Identities=22%  Similarity=0.531  Sum_probs=17.2

Q ss_pred             ccCCCCCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+|..|++-. .-.++..|++.|.
T Consensus       155 YKCe~CgKYv-DId~~~~Hlk~Hg  177 (226)
T 2czr_A          155 YKCEECGKYV-DIENLEAHLREHG  177 (226)
T ss_dssp             EECTTTCCEE-EGGGHHHHHHTTT
T ss_pred             EehhhcCcee-cHHHHHHHHHHcC
Confidence            7899999854 4556888888764

>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=83.59  E-value=0.4  Score=18.37  Aligned_cols=14  Identities=14%  Similarity=0.299  Sum_probs=11.3

Q ss_pred             CccCCCCCcccccc
Q psy12023         30 KYQCPQCPYRAKQN   43 (55)
Q Consensus        30 ~~~c~~c~~~f~~~   43 (55)
                      ||.|..|++.|...
T Consensus        29 pf~C~~C~~~FC~~   42 (75)
T 1wys_A           29 PFVCDGCSGIFCLE   42 (75)
T ss_dssp             CEECTTTCCEECST
T ss_pred             eeECcccCcCcCcc
Confidence            39999999998643

>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1

Probab=83.27  E-value=1  Score=18.79  Aligned_cols=12  Identities=17%  Similarity=0.318  Sum_probs=6.9

Q ss_pred             ccCCCCCccccc
Q psy12023         31 YQCPQCPYRAKQ   42 (55)
Q Consensus        31 ~~c~~c~~~f~~   42 (55)
                      ..|..||+.|..
T Consensus        36 HHCR~CG~ifC~   47 (120)
T 1y02_A           36 QTCLDCKKNFCM   47 (120)
T ss_dssp             EECTTTCCEECG
T ss_pred             ccCCCCCCeeCH
Confidence            456666665543

>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y

Probab=82.86  E-value=0.12  Score=20.99  Aligned_cols=10  Identities=20%  Similarity=0.730  Sum_probs=5.3

Q ss_pred             ccCCCCCccc
Q psy12023         31 YQCPQCPYRA   40 (55)
Q Consensus        31 ~~c~~c~~~f   40 (55)
                      +.|..|++.|
T Consensus        55 W~C~kCg~~~   64 (103)
T 4a17_Y           55 WKCKPCKKII   64 (103)
T ss_dssp             EEETTTTEEE
T ss_pred             EEcCCCCCEE
Confidence            4555555544

>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A

Probab=82.61  E-value=1.3  Score=16.99  Aligned_cols=12  Identities=17%  Similarity=0.312  Sum_probs=6.6

Q ss_pred             ccCCCCCccccc
Q psy12023         31 YQCPQCPYRAKQ   42 (55)
Q Consensus        31 ~~c~~c~~~f~~   42 (55)
                      ..|..||..|..
T Consensus        36 HHCR~CG~v~C~   47 (82)
T 2yw8_A           36 HHCRNCGHIFCN   47 (82)
T ss_dssp             EECTTTCCEECS
T ss_pred             ccCCCCCCEECh
Confidence            456666655543

>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A

Probab=82.56  E-value=1  Score=18.77  Aligned_cols=11  Identities=27%  Similarity=0.404  Sum_probs=5.5

Q ss_pred             ccCCCCCcccc
Q psy12023         31 YQCPQCPYRAK   41 (55)
Q Consensus        31 ~~c~~c~~~f~   41 (55)
                      ..|..||..|.
T Consensus        86 HHCR~CG~vfC   96 (125)
T 1joc_A           86 HHCRQCGNIFC   96 (125)
T ss_dssp             EECTTTCCEEC
T ss_pred             ccCCCCCeEEC
Confidence            44555555443

>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}

Probab=82.38  E-value=1.3  Score=17.08  Aligned_cols=12  Identities=25%  Similarity=0.584  Sum_probs=7.4

Q ss_pred             ccCCCCCccccc
Q psy12023         31 YQCPQCPYRAKQ   42 (55)
Q Consensus        31 ~~c~~c~~~f~~   42 (55)
                      ..|..||..|..
T Consensus        38 HHCR~CG~v~C~   49 (84)
T 1z2q_A           38 HHCRNCGYVLCG   49 (84)
T ss_dssp             EECTTTCCEECT
T ss_pred             ccccCCCcEECh
Confidence            566667666543

>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*

Probab=82.04  E-value=0.49  Score=20.10  Aligned_cols=12  Identities=33%  Similarity=0.858  Sum_probs=9.0

Q ss_pred             CCCccccccccc
Q psy12023          2 FMCDVCGKGYKY   13 (55)
Q Consensus         2 ~~c~~c~~~~~~   13 (55)
                      +.|..||..|..
T Consensus        71 ~~C~~CG~~~~~   82 (139)
T 3a43_A           71 FKCRNCNYEWKL   82 (139)
T ss_dssp             EEETTTCCEEEG
T ss_pred             EECCCCCCEEec
Confidence            468889888764

>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.34  E-value=0.72  Score=17.07  Aligned_cols=13  Identities=23%  Similarity=0.490  Sum_probs=10.7

Q ss_pred             CccCCCCCccccc
Q psy12023         30 KYQCPQCPYRAKQ   42 (55)
Q Consensus        30 ~~~c~~c~~~f~~   42 (55)
                      ||.|..|+..|..
T Consensus        27 ~f~C~~C~~~FC~   39 (63)
T 1x4v_A           27 KLTCERCSRNFCI   39 (63)
T ss_dssp             CCBCSSSCCBCCH
T ss_pred             ceECCCCCcccCc
Confidence            3999999998864

>3ax1_A Serrate RNA effector molecule; miRNA processing, protein binding; 2.74A {Arabidopsis thaliana}

Probab=80.65  E-value=1  Score=22.31  Aligned_cols=24  Identities=25%  Similarity=0.585  Sum_probs=20.8

Q ss_pred             ccC--CCCCcccccchHHHHHHHhhc
Q psy12023         31 YQC--PQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c--~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.|  ..|+|.|.-......|....|
T Consensus       305 ~~C~~~~C~KLFk~~eFV~KHi~~KH  330 (358)
T 3ax1_A          305 YGCGAKGCTKLFHAAEFVYKHLKLKH  330 (358)
T ss_dssp             EEECSSSCCCEESSHHHHHHHHHHHC
T ss_pred             cCCCCCCcCcccCCHHHHHHHHHhcc
Confidence            788  579999999999999988766

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=80.04  E-value=1.5  Score=20.10  Aligned_cols=12  Identities=17%  Similarity=0.254  Sum_probs=6.8

Q ss_pred             ccCCCCCccccc
Q psy12023         31 YQCPQCPYRAKQ   42 (55)
Q Consensus        31 ~~c~~c~~~f~~   42 (55)
                      ..|..||..|..
T Consensus       181 hHCR~CG~v~C~  192 (226)
T 3zyq_A          181 HHCRACGQIFCG  192 (226)
T ss_dssp             EECTTTCCEECT
T ss_pred             cccCCCcCEeCh
Confidence            556666665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	55
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.91
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.7
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.69
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.69
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.67
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.64
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.63
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.61
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.61
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.61
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.53
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.52
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.5
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.48
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.45
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.44
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.43
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.39
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.38
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.36
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.32
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.29
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.29
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.28
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.25
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.23
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.2
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.2
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.19
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.16
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.16
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.15
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.14
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	99.12
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.1
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.08
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.06
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.96
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.92
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.92
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.91
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.86
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.78
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.74
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.74
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.73
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.69
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.68
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.68
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.63
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.55
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	98.49
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.44
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	98.39
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.39
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.38
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	98.37
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	98.34
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.34
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.27
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	98.26
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.26
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.24
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.21
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	98.18
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.17
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.14
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.12
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.09
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	98.06
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.97
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.96
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.94
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.92
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.92
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.92
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.87
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.84
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.84
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.8
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	97.75
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.74
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	97.64
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.63
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	97.61
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.57
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	97.26
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.14
d1y0jb1	36	U-shaped transcription factor, different fingers {	97.13
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.96
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.62
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	96.33
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	96.16
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	96.06
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	96.0
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	95.71
d2gmga1	105	Hypothetical protein PF0610 {Pyrococcus furiosus [	94.98
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.77
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	94.39
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	93.96
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	93.88
d1lkoa2	44	Rubrerythrin, C-terminal domain {Desulfovibrio vul	93.43
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	92.51
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	90.73
d2ct5a1	60	Zinc finger BED domain-containing protein 1 {Human	90.66
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	90.36
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	89.84
d1vqoz1	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	88.93
d1jj2y_	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	88.9
d1twfl_	46	RBP12 subunit of RNA polymerase II {Baker's yeast	88.66
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	88.5
d1wjpa1	42	Zinc finger protein 295, ZNF295 {Human (Homo sapie	88.48
d1d4ua2	36	DNA repair factor XPA DNA- and RPA-binding domain,	87.45
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	87.29
d1z60a1	59	TFIIH p44 subunit cysteine-rich domain {Human (Hom	87.26
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	87.25
d1x3ca1	61	Zinc finger protein 292, ZNF292 {Human (Homo sapie	87.17
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	87.14
d1fu9a_	36	U-shaped transcription factor, different fingers {	87.03
d1vfya_	67	vps27p protein {Baker's yeast (Saccharomyces cerev	86.03
d1wfka_	88	Zinc finger FYVE domain containing protein 19 {Mou	85.81
d1y02a2	51	Rififylin (FYVE-RING finger protein Sakura) {Human	84.72
d1joca1	64	Eea1 {Human (Homo sapiens) [TaxId: 9606]}	83.65
d1dvpa2	72	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	83.32
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	81.4

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.3e-25  Score=79.50  Aligned_cols=51  Identities=35%  Similarity=0.719  Sum_probs=48.8

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      ||.| .||+.|.....|..|+.+|+++++ |.|.+|+++|.+.+.|..|+++|
T Consensus         3 ~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekp-y~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           3 LYPC-QCGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CEEC-TTSCEESSHHHHHHHHHHHSCCCS-EECTTTSCEESSSHHHHHHHTTT
T ss_pred             CCCC-CCCCeECCHHHhHHHhhccccccC-CcCCCcCCEecCHHHHHHHHhcC
Confidence            7899 599999999999999999999988 99999999999999999999886

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=2.1e-18  Score=57.63  Aligned_cols=34  Identities=26%  Similarity=0.561  Sum_probs=31.2

Q ss_pred             HHHHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         20 HKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        20 ~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.++|+|++| |.|.+|++.|.+.++|..|+++|-
T Consensus         2 h~R~HTgeKP-y~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKP-FQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSS-BCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccC-eEeCCCCCEecCHHHHHHHHhcCc
Confidence            5678999998 999999999999999999999873

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.3e-18  Score=56.83  Aligned_cols=32  Identities=28%  Similarity=0.632  Sum_probs=29.8

Q ss_pred             HHHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         22 KFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        22 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ++|+|++| |+|.+|+++|.+.+.|..|+++|+
T Consensus         1 R~HTgekP-y~C~~C~k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           1 RTHTGEKP-YACSHCDKTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             TTCCCCCC-EECSSSSCEESSHHHHHHHHHHTT
T ss_pred             CCCCCCCC-EECCCCCCCcCCHhHHHHhCcccC
Confidence            36899998 999999999999999999999987

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.2e-18  Score=58.55  Aligned_cols=36  Identities=17%  Similarity=0.326  Sum_probs=32.5

Q ss_pred             hHHHHHhCCCCCccCCCCCcccccchHHHHHHHhhcC
Q psy12023         19 RHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKHY   55 (55)
Q Consensus        19 ~~~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~   55 (55)
                      .|+.+|++++| |.|++||++|.+.++|..|+++|.+
T Consensus         2 rH~~~Ht~ekp-y~C~~CgK~F~~~s~L~~H~r~HtG   37 (38)
T d2cota2           2 RSEWQQRERRR-YKCDECGKSFSHSSDLSKHRRTHTG   37 (38)
T ss_dssp             CCCSCCCCSCS-SBCSSSCCBCSCHHHHHHHHTTTCC
T ss_pred             ccCcccCCCCC-EecCCCCceeeCHHHHHHhCccCCC
Confidence            46778999998 9999999999999999999999863

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.6e-17  Score=54.07  Aligned_cols=31  Identities=23%  Similarity=0.591  Sum_probs=28.8

Q ss_pred             HHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         23 FECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        23 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +|++++| |+|.+|+++|.+.++|..|+++|.
T Consensus         1 IHTgekp-y~C~~Cgk~F~~~~~L~~H~r~Ht   31 (33)
T d1x6ea1           1 IHSGEKP-YGCVECGKAFSRSSILVQHQRVHT   31 (33)
T ss_dssp             TTTTCCC-EECSSSCCEESSHHHHHHHHHGGG
T ss_pred             CcCCCCC-eeCCCCCCEeCchHHhHhhccccC
Confidence            5789888 999999999999999999999985

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=4.3e-17  Score=53.66  Aligned_cols=30  Identities=20%  Similarity=0.537  Sum_probs=27.5

Q ss_pred             HhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         24 ECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        24 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ++|++| |+|++|++.|.+.++|..|+++|.
T Consensus         2 ~TGekP-y~C~~C~k~F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           2 SSGKRP-FVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSC-EECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCcc-ccCCCCCCcccChHHHHHHccccC
Confidence            578888 999999999999999999999884

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=5.7e-17  Score=54.49  Aligned_cols=34  Identities=26%  Similarity=0.733  Sum_probs=30.0

Q ss_pred             CCCCccccccccchhhHHhHHH-HHhCCCCCccCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKK-FECGQEPKYQCPQ   35 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~-~~~~~~~~~~c~~   35 (55)
                      ||.|..||+.|...+.|..|++ +|++++| |.|++
T Consensus         5 py~C~~Cgk~F~~~~~L~~H~r~~Ht~ekp-y~C~i   39 (39)
T d2epsa1           5 PYICQSCGKGFSRPDHLNGHIKQVHTSERP-HKCQV   39 (39)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHTSCCCCC-CCSSS
T ss_pred             CccCCCCCCCcCChHHhhccCcCccCCCcC-cCCcC
Confidence            7899999999999999999975 7999888 99864

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=6.8e-17  Score=53.58  Aligned_cols=31  Identities=32%  Similarity=0.675  Sum_probs=28.2

Q ss_pred             HHhCCCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         23 FECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        23 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +|+|++| |.|+.|++.|.+.++|..|++.+|
T Consensus         2 ~HTgekP-~~C~~C~k~F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2           2 THSGEKP-YECYICHARFTQSGTMKMHILQKH   32 (36)
T ss_dssp             CCSCCCS-EECTTTCCEESCHHHHHHHHHHHS
T ss_pred             ccCCCCC-EeCCCCcccccchHHHHHHccccc
Confidence            6889988 999999999999999999987655

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=2e-16  Score=49.74  Aligned_cols=28  Identities=36%  Similarity=0.644  Sum_probs=24.4

Q ss_pred             CCCCccCCCCCcccccchHHHHHHHhhcC
Q psy12023         27 QEPKYQCPQCPYRAKQNAHLTTHMAIKHY   55 (55)
Q Consensus        27 ~~~~~~c~~c~~~f~~~~~l~~h~~~~~~   55 (55)
                      |+| |+|++|+++|.++++|..|+++|.+
T Consensus         1 EKP-y~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKP-FQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCC-EECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcC-ccCCCCcCEecccccccccCCCccC
Confidence            466 9999999999999999999999853

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2e-16  Score=48.80  Aligned_cols=24  Identities=33%  Similarity=0.607  Sum_probs=22.4

Q ss_pred             CccCCCCCcccccchHHHHHHHhh
Q psy12023         30 KYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        30 ~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      ||+|.+||++|.+++.|..|+++|
T Consensus         2 Py~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCccCC
Confidence            499999999999999999999987

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.53  E-value=3.6e-15  Score=47.21  Aligned_cols=23  Identities=22%  Similarity=0.518  Sum_probs=12.6

Q ss_pred             ccCCCCCcccccchHHHHHHHhh
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      |.|++|++.|.+.+.|..|+++|
T Consensus         3 ~~C~~C~k~F~~~~~L~~H~r~H   25 (29)
T d2adra1           3 FVCEVCTRAFARQEHLKRHYRSH   25 (29)
T ss_dssp             BCCTTTCCCBSCHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCchHcccccCcc
Confidence            55555555555555555555554

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=6.8e-15  Score=46.53  Aligned_cols=24  Identities=33%  Similarity=0.926  Sum_probs=14.0

Q ss_pred             ccCCCCCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.|.+|++.|.+++.|..|+++|.
T Consensus         3 y~C~~C~k~F~~~s~L~~H~r~Ht   26 (29)
T d1sp1a_           3 FACPECPKRFMRSDHLSKHIKTHQ   26 (29)
T ss_dssp             SCCTTTTCCCSCSHHHHHHHHGGG
T ss_pred             EECCcCCCeecchHHhhhhcCccC
Confidence            555556666666666666655553

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.7e-14  Score=45.56  Aligned_cols=26  Identities=23%  Similarity=0.457  Sum_probs=25.1

Q ss_pred             CCCCccccccccchhhHHhHHHHHhC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECG   26 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~   26 (55)
                      ||.|..|++.|...+.|..|+++|+|
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~Htg   27 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKTHQN   27 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHGGGC
T ss_pred             CEECCcCCCeecchHHhhhhcCccCC
Confidence            79999999999999999999999987

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.48  E-value=2e-14  Score=45.44  Aligned_cols=26  Identities=23%  Similarity=0.664  Sum_probs=25.1

Q ss_pred             CCCCccccccccchhhHHhHHHHHhC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECG   26 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~   26 (55)
                      ||.|+.|++.|...+.|..|+++|+|
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r~HTg   27 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTS
T ss_pred             cCCCCCCCCCCCCchHcccccCcccC
Confidence            79999999999999999999999987

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.8e-14  Score=44.34  Aligned_cols=25  Identities=24%  Similarity=0.720  Sum_probs=23.9

Q ss_pred             CCCCccccccccchhhHHhHHHHHh
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFEC   25 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~   25 (55)
                      ||+|++||+.|...+.|..|+++|+
T Consensus         2 Py~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCccCCC
Confidence            8999999999999999999999985

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.3e-14  Score=46.41  Aligned_cols=32  Identities=31%  Similarity=0.811  Sum_probs=29.0

Q ss_pred             CCCcc--ccccccchhhHHhHHHHHhCCCCCccCC
Q psy12023          2 FMCDV--CGKGYKYKNGIYRHKKFECGQEPKYQCP   34 (55)
Q Consensus         2 ~~c~~--c~~~~~~~~~~~~~~~~~~~~~~~~~c~   34 (55)
                      |.|..  |++.|...+.|..|+++|+|++| |.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekp-y~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCC-CSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCC-EeCC
Confidence            56765  99999999999999999999998 9986

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=3.7e-14  Score=44.45  Aligned_cols=26  Identities=19%  Similarity=0.576  Sum_probs=25.0

Q ss_pred             CCCCccccccccchhhHHhHHHHHhC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECG   26 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~   26 (55)
                      ||+|..|++.|..++.|..|+++|+|
T Consensus         3 Py~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           3 PFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CccCCCCcCEecccccccccCCCccC
Confidence            79999999999999999999999987

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=8e-14  Score=45.15  Aligned_cols=27  Identities=22%  Similarity=0.609  Sum_probs=25.9

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQ   27 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~   27 (55)
                      ||+|..||+.|...+.|..|+++|+||
T Consensus         7 py~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           7 PYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CeeCCCCCCEeCchHHhHhhccccCCC
Confidence            799999999999999999999999985

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=9.5e-14  Score=46.36  Aligned_cols=27  Identities=26%  Similarity=0.779  Sum_probs=25.9

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQ   27 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~   27 (55)
                      ||.|++||+.|...+.|..|+++|+||
T Consensus        12 py~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2          12 RYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             SSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             CEecCCCCceeeCHHHHHHhCccCCCC
Confidence            799999999999999999999999985

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.36  E-value=2.9e-14  Score=49.55  Aligned_cols=37  Identities=16%  Similarity=0.319  Sum_probs=31.3

Q ss_pred             hHHhHHHHHhCCCCCccCCC--CCcccccchHHHHHHHhhc
Q psy12023         16 GIYRHKKFECGQEPKYQCPQ--CPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        16 ~~~~~~~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~   54 (55)
                      .+..|+ .+.++++ |.|..  |++.|.+.++|..|+++|.
T Consensus         6 ~l~~h~-~h~gekp-y~C~~~~C~k~F~~~~~L~~H~r~Ht   44 (47)
T d1ncsa_           6 SIDKYV-KEMPDKT-FECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             SGGGSC-EEETTTE-EECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             hhcchh-hccCCCC-eECCcCCCCccccCchHHHhhccccc
Confidence            345555 4889888 99976  9999999999999999985

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=9.4e-13  Score=41.74  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=12.0

Q ss_pred             ccCCC--CCcccccchHHHHHHHhh
Q psy12023         31 YQCPQ--CPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        31 ~~c~~--c~~~f~~~~~l~~h~~~~   53 (55)
                      |.|+.  |+++|.+.+.|..|+++|
T Consensus         3 ~~C~~~gCgk~F~~~~~L~~H~r~H   27 (30)
T d2glia3           3 HKCTFEGCRKSYSRLENLKTHLRSH   27 (30)
T ss_dssp             CCCCSTTCCCCCSSHHHHHHHHHHT
T ss_pred             eeCCCCCCCceECChhHhhhhcCcC
Confidence            44544  555555555555555554

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=2.5e-12  Score=41.28  Aligned_cols=27  Identities=26%  Similarity=0.560  Sum_probs=24.0

Q ss_pred             CCCCccCCC--CCcccccchHHHHHHHhhc
Q psy12023         27 QEPKYQCPQ--CPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        27 ~~~~~~c~~--c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+| |.|..  |++.|.+.++|.+|+++|.
T Consensus         1 ErP-~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRP-YSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCS-BCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcC-eECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            356 99977  9999999999999999985

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.9e-12  Score=41.03  Aligned_cols=26  Identities=23%  Similarity=0.487  Sum_probs=24.6

Q ss_pred             CCCCcc--ccccccchhhHHhHHHHHhC
Q psy12023          1 MFMCDV--CGKGYKYKNGIYRHKKFECG   26 (55)
Q Consensus         1 p~~c~~--c~~~~~~~~~~~~~~~~~~~   26 (55)
                      ||.|..  |++.|...+.|..|+++|+|
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHTTT
T ss_pred             CeeCCCCCCCceECChhHhhhhcCcCcC
Confidence            789988  99999999999999999987

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.3e-12  Score=41.46  Aligned_cols=23  Identities=35%  Similarity=0.645  Sum_probs=12.2

Q ss_pred             ccCCC--CCcccccchHHHHHHHhh
Q psy12023         31 YQCPQ--CPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        31 ~~c~~--c~~~f~~~~~l~~h~~~~   53 (55)
                      |.|+.  |+++|.+.+.|..|+++|
T Consensus         3 ~~C~~~gCgk~F~~~~~L~~H~r~H   27 (30)
T d1ubdc3           3 FQCTFEGCGKRFSLDFNLRTHVRIH   27 (30)
T ss_dssp             EECCSTTCCCEESCHHHHHHHHHHH
T ss_pred             ccCCCCCCCceECcHHHcCcccccc
Confidence            45543  555555555555555554

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.3e-12  Score=43.04  Aligned_cols=27  Identities=26%  Similarity=0.630  Sum_probs=23.7

Q ss_pred             CCCCccCCCCCcccccchHHHHHHH-hhc
Q psy12023         27 QEPKYQCPQCPYRAKQNAHLTTHMA-IKH   54 (55)
Q Consensus        27 ~~~~~~c~~c~~~f~~~~~l~~h~~-~~~   54 (55)
                      ++| |.|..||+.|.+.++|..|++ +|.
T Consensus         3 ~Kp-y~C~~Cgk~F~~~~~L~~H~r~~Ht   30 (39)
T d2epsa1           3 GKP-YICQSCGKGFSRPDHLNGHIKQVHT   30 (39)
T ss_dssp             SCC-EECSSSCCEESSHHHHHHHHHHTSC
T ss_pred             CCC-ccCCCCCCCcCChHHhhccCcCccC
Confidence            466 999999999999999999976 553

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.8e-12  Score=40.66  Aligned_cols=26  Identities=27%  Similarity=0.690  Sum_probs=24.3

Q ss_pred             CCCCcc--ccccccchhhHHhHHHHHhC
Q psy12023          1 MFMCDV--CGKGYKYKNGIYRHKKFECG   26 (55)
Q Consensus         1 p~~c~~--c~~~~~~~~~~~~~~~~~~~   26 (55)
                      ||.|+.  |++.|...+.|..|+++|+|
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CccCCCCCCCceECcHHHcCccccccCC
Confidence            788977  99999999999999999987

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=4.1e-12  Score=41.53  Aligned_cols=27  Identities=26%  Similarity=0.536  Sum_probs=25.5

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQ   27 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~   27 (55)
                      ||.|..|++.|...+.|..|+++|+..
T Consensus         7 Py~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           7 PFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             cccCCCCCCcccChHHHHHHccccCCc
Confidence            899999999999999999999999875

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=5.5e-12  Score=40.23  Aligned_cols=24  Identities=21%  Similarity=0.477  Sum_probs=13.9

Q ss_pred             ccCC--CCCcccccchHHHHHHHhhc
Q psy12023         31 YQCP--QCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~--~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.|+  .|++.|.+.++|..|+++|.
T Consensus         3 f~C~~~~C~k~F~~~~~L~~H~r~Ht   28 (31)
T d1sp2a_           3 FMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CCCcCCCCCcCcCChhHhhhhcCccc
Confidence            5553  46666666666666666553

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5.3e-12  Score=39.34  Aligned_cols=25  Identities=28%  Similarity=0.643  Sum_probs=21.8

Q ss_pred             CccCCC--CCcccccchHHHHHHHhhc
Q psy12023         30 KYQCPQ--CPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        30 ~~~c~~--c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||.|+.  |+++|.+.++|+.|+++|.
T Consensus         2 Pf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            488976  9999999999999999873

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=6.2e-12  Score=39.51  Aligned_cols=24  Identities=42%  Similarity=0.838  Sum_probs=19.2

Q ss_pred             ccCCC--CCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQ--CPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~--c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.|..  |+++|.+.++|..|+++|.
T Consensus         3 ~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           3 YACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             EECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             eECCCCCCCcEECchhHhhhhcCccC
Confidence            78865  8888888888888888774

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=8.2e-12  Score=41.08  Aligned_cols=27  Identities=22%  Similarity=0.349  Sum_probs=25.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQ   27 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~   27 (55)
                      ||+|..|++.|...+.|..|+++|.++
T Consensus         8 Py~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           8 PYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            799999999999999999999999874

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=2.1e-11  Score=37.11  Aligned_cols=27  Identities=19%  Similarity=0.498  Sum_probs=23.9

Q ss_pred             CCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         27 QEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        27 ~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ++| |.|++||+.|.++....+|.++|-
T Consensus         1 EkP-f~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKP-FACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCC-EECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCC-cccchhhhhhhcchhhhhhhhhcc
Confidence            356 999999999999999999999874

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.6e-11  Score=38.63  Aligned_cols=26  Identities=38%  Similarity=0.852  Sum_probs=23.8

Q ss_pred             CCCCc--cccccccchhhHHhHHHHHhC
Q psy12023          1 MFMCD--VCGKGYKYKNGIYRHKKFECG   26 (55)
Q Consensus         1 p~~c~--~c~~~~~~~~~~~~~~~~~~~   26 (55)
                      ||.|+  .|++.|...+.|..|+++|+|
T Consensus         2 pf~C~~~~C~k~F~~~~~L~~H~r~Htg   29 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             cCCCcCCCCCcCcCChhHhhhhcCcccc
Confidence            78885  699999999999999999987

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.8e-11  Score=36.22  Aligned_cols=25  Identities=28%  Similarity=0.635  Sum_probs=12.8

Q ss_pred             CCCCccccccccchhhHHhHHHHHh
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFEC   25 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~   25 (55)
                      |.+|+.|++.|..+..|..|++.|+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            3445555555555555555555444

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=2.1e-11  Score=38.28  Aligned_cols=26  Identities=23%  Similarity=0.673  Sum_probs=24.1

Q ss_pred             CCCCcc--ccccccchhhHHhHHHHHhC
Q psy12023          1 MFMCDV--CGKGYKYKNGIYRHKKFECG   26 (55)
Q Consensus         1 p~~c~~--c~~~~~~~~~~~~~~~~~~~   26 (55)
                      ||.|..  |++.|...+.|..|+++|+|
T Consensus         2 p~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CeECCCCCCCcEECchhHhhhhcCccCC
Confidence            788977  99999999999999999986

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=4.8e-11  Score=39.40  Aligned_cols=26  Identities=19%  Similarity=0.420  Sum_probs=24.4

Q ss_pred             CCCCccccccccchhhHHhHHHHHhC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECG   26 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~   26 (55)
                      ||+|..|++.|..++.|..|+++|.+
T Consensus        11 Py~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_          11 PFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            89999999999999999999998865

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.06  E-value=2e-11  Score=42.25  Aligned_cols=28  Identities=25%  Similarity=0.445  Sum_probs=25.8

Q ss_pred             CCCCcc--ccccccchhhHHhHHHHHhCCC
Q psy12023          1 MFMCDV--CGKGYKYKNGIYRHKKFECGQE   28 (55)
Q Consensus         1 p~~c~~--c~~~~~~~~~~~~~~~~~~~~~   28 (55)
                      ||.|..  |++.|...+.|..|+++|+|++
T Consensus        18 py~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          18 TFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             CeECCcCCCCccccCchHHHhhcccccCCC
Confidence            688977  9999999999999999999975

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.1e-10  Score=35.61  Aligned_cols=25  Identities=16%  Similarity=0.457  Sum_probs=23.0

Q ss_pred             CCCCcc--ccccccchhhHHhHHHHHh
Q psy12023          1 MFMCDV--CGKGYKYKNGIYRHKKFEC   25 (55)
Q Consensus         1 p~~c~~--c~~~~~~~~~~~~~~~~~~   25 (55)
                      ||.|..  |++.|...+.|..|+++|+
T Consensus         2 Pf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            788987  9999999999999999885

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=5.3e-10  Score=35.71  Aligned_cols=27  Identities=30%  Similarity=0.613  Sum_probs=24.6

Q ss_pred             CCCCcc--ccccccchhhHHhHHHHHhCC
Q psy12023          1 MFMCDV--CGKGYKYKNGIYRHKKFECGQ   27 (55)
Q Consensus         1 p~~c~~--c~~~~~~~~~~~~~~~~~~~~   27 (55)
                      ||.|..  |++.|...+.|..|+++|+..
T Consensus         3 P~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           3 PYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            789987  999999999999999999863

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=4.7e-10  Score=39.53  Aligned_cols=26  Identities=19%  Similarity=0.496  Sum_probs=23.2

Q ss_pred             CCCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         27 QEPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        27 ~~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |++ |.|+ ||++|.....|..|+++|.
T Consensus         1 EK~-y~C~-Cgk~F~~~~~l~~H~~~Ht   26 (53)
T d2csha1           1 DKL-YPCQ-CGKSFTHKSQRDRHMSMHL   26 (53)
T ss_dssp             CCC-EECT-TSCEESSHHHHHHHHHHHS
T ss_pred             CcC-CCCC-CCCeECCHHHhHHHhhccc
Confidence            466 9995 9999999999999999885

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=4.5e-10  Score=33.15  Aligned_cols=25  Identities=24%  Similarity=0.397  Sum_probs=22.7

Q ss_pred             CccCCCCCcccccchHHHHHHHhhc
Q psy12023         30 KYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        30 ~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.+|++|++.|++...|..|+|.|.
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            3689999999999999999999875

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=7.4e-10  Score=36.26  Aligned_cols=26  Identities=12%  Similarity=0.268  Sum_probs=22.9

Q ss_pred             CCCCccccccccchhhHHhHHHHHhC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECG   26 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~   26 (55)
                      ||.|+.|++.|..++.|..|+..+.+
T Consensus         8 P~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           8 PYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             SEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             CEeCCCCcccccchHHHHHHcccccC
Confidence            79999999999999999999865444

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=3e-09  Score=32.06  Aligned_cols=26  Identities=31%  Similarity=0.912  Sum_probs=22.2

Q ss_pred             CCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         28 EPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        28 ~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +| |+|+.|......++.|..|.|.|.
T Consensus         2 rp-fkcqlcsy~srnssqltvhlr~ht   27 (29)
T d2dmda3           2 RP-FKCQICPYASRNSSQLTVHLRSHT   27 (29)
T ss_dssp             CC-EECSSSSCEESSHHHHHHHHTTCC
T ss_pred             Cc-ceeeecccccCCchheEEeeeccc
Confidence            45 999999999889999999988775

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=4.3e-09  Score=32.33  Aligned_cols=26  Identities=31%  Similarity=0.783  Sum_probs=19.5

Q ss_pred             CCCccCCCCCcccccchHHHHHHHhhc
Q psy12023         28 EPKYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        28 ~~~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +| |.|++|...|.+...+.-|.+.|.
T Consensus         2 kp-~~cpic~qrfkrkdrmsyhvrshd   27 (32)
T d2epqa1           2 KP-YSCPVCGLRFKRKDRMSYHVRSHD   27 (32)
T ss_dssp             CS-SEETTTTEECSCHHHHHHHHHHHS
T ss_pred             CC-cccchHHHHhhccccceEeeeccc
Confidence            45 888888888888877777777653

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=2.4e-09  Score=32.14  Aligned_cols=25  Identities=28%  Similarity=0.699  Sum_probs=19.7

Q ss_pred             CCccccccccchhhHHhHHHHHhCC
Q psy12023          3 MCDVCGKGYKYKNGIYRHKKFECGQ   27 (55)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~~~~~~~~   27 (55)
                      -|.+||+.|...+.|++|+.+|+|+
T Consensus         4 vc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           4 VCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             hHHHHhHHHHHHHHHHHHhhcccCC
Confidence            4778888888888888888887764

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=3.4e-09  Score=34.62  Aligned_cols=24  Identities=29%  Similarity=0.737  Sum_probs=21.2

Q ss_pred             ccCCC--CCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQ--CPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~--c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.|+.  |+++|.+.+.|.+|+++|.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Ht   27 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHS   27 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHH
T ss_pred             eECCCCCCCCeeCChhHhccccCeeC
Confidence            67765  9999999999999999984

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=5.8e-09  Score=34.33  Aligned_cols=25  Identities=28%  Similarity=0.656  Sum_probs=21.4

Q ss_pred             CCCCCccCCCCCcccccchHHHHHHH
Q psy12023         26 GQEPKYQCPQCPYRAKQNAHLTTHMA   51 (55)
Q Consensus        26 ~~~~~~~c~~c~~~f~~~~~l~~h~~   51 (55)
                      |-+| |+|.+|++.|.+..++.+|..
T Consensus         2 GiKP-YeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKP-YECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCC-EECSSSCCEESCHHHHHHHHH
T ss_pred             CCCc-eeccchhhhhhhHHHHHHhhh
Confidence            4466 999999999999999988853

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.8e-09  Score=33.43  Aligned_cols=28  Identities=36%  Similarity=0.829  Sum_probs=25.6

Q ss_pred             CCccccccccchhhHHhHHHHHhCCCCCc
Q psy12023          3 MCDVCGKGYKYKNGIYRHKKFECGQEPKY   31 (55)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~   31 (55)
                      .|+.||+.|...-.|.+|..+|++++| |
T Consensus         7 ~ce~cgk~frdvyhlnrhklshs~ekp-y   34 (35)
T d2epra1           7 ACEICGKIFRDVYHLNRHKLSHSGEKP-Y   34 (35)
T ss_dssp             EETTTTEEESSHHHHHHHGGGSCSCCC-C
T ss_pred             hHHHHHHHHHHHHHHHhhhcccCCCCC-C
Confidence            488999999999999999999999987 6

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.2e-08  Score=31.30  Aligned_cols=26  Identities=27%  Similarity=0.498  Sum_probs=22.4

Q ss_pred             CccCCC--CCcccccchHHHHHHHhhcC
Q psy12023         30 KYQCPQ--CPYRAKQNAHLTTHMAIKHY   55 (55)
Q Consensus        30 ~~~c~~--c~~~f~~~~~l~~h~~~~~~   55 (55)
                      ||.|.+  |++.+..+++|+.|++.+|+
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            388866  99999999999999998774

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=7.4e-09  Score=31.37  Aligned_cols=25  Identities=32%  Similarity=0.756  Sum_probs=22.8

Q ss_pred             CCCCccccccccchhhHHhHHHHHh
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFEC   25 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~   25 (55)
                      ||.|+.||+.|..+....+|..+|.
T Consensus         3 Pf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           3 PFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             Ccccchhhhhhhcchhhhhhhhhcc
Confidence            7899999999999999999988874

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=3.1e-08  Score=29.58  Aligned_cols=25  Identities=32%  Similarity=0.793  Sum_probs=22.1

Q ss_pred             CccCCCCCcccccchHHHHHHHhhc
Q psy12023         30 KYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        30 ~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |++|..|..+...+++|..|+|+|.
T Consensus         3 p~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           3 PYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CcccccccchhcchhhHhhhhhccc
Confidence            3999999999999999999999874

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=98.49  E-value=4.4e-08  Score=28.53  Aligned_cols=23  Identities=22%  Similarity=0.563  Sum_probs=14.8

Q ss_pred             ccCCCCCcccccchHHHHHHHhh
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      |+|..|.+.|-..+.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            45666666666666666666655

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.9e-08  Score=29.85  Aligned_cols=27  Identities=19%  Similarity=0.452  Sum_probs=24.6

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQ   27 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~   27 (55)
                      ||+|..|......++.|..|.+.|+|+
T Consensus         3 pfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           3 PFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             cceeeecccccCCchheEEeeecccCc
Confidence            789999999999999999999998874

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=3e-07  Score=27.84  Aligned_cols=25  Identities=40%  Similarity=0.921  Sum_probs=21.2

Q ss_pred             CccCCCCCcccccchHHHHHHHhhc
Q psy12023         30 KYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        30 ~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||+|+-|......+++|..|.++.|
T Consensus         2 py~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             Cccccccccccccchhhhhhhhccc
Confidence            3889999988888999999988766

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=2.5e-07  Score=27.87  Aligned_cols=26  Identities=19%  Similarity=0.474  Sum_probs=20.0

Q ss_pred             CCCccccccccchhhHHhHHHHHhCC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQ   27 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~   27 (55)
                      |.|..||....-.+.|..|++.|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            56777887777777888888887775

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.2e-07  Score=28.36  Aligned_cols=24  Identities=17%  Similarity=0.396  Sum_probs=21.1

Q ss_pred             ccCCCCCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ..|.+||++|..++.|++|+-+|.
T Consensus         3 hvc~ecgkaf~essklkrh~lvht   26 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHT   26 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTS
T ss_pred             chHHHHhHHHHHHHHHHHHhhccc
Confidence            468899999999999999987774

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=98.37  E-value=1.7e-07  Score=28.21  Aligned_cols=24  Identities=29%  Similarity=0.675  Sum_probs=20.0

Q ss_pred             CccCC--CCCcccccchHHHHHHHhh
Q psy12023         30 KYQCP--QCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        30 ~~~c~--~c~~~f~~~~~l~~h~~~~   53 (55)
                      ||+|+  .|++.|+.++.|++|+++|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            48884  5899999999999998876

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=98.34  E-value=1.8e-07  Score=27.18  Aligned_cols=24  Identities=21%  Similarity=0.690  Sum_probs=21.6

Q ss_pred             CCCccccccccchhhHHhHHHHHh
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFEC   25 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~   25 (55)
                      |+|..|...|..++.|.+|+++|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            689999999999999999998763

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2e-07  Score=28.53  Aligned_cols=28  Identities=29%  Similarity=0.554  Sum_probs=25.6

Q ss_pred             CCCCccccccccchhhHHhHHHHHhCCC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECGQE   28 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~~~   28 (55)
                      ||.|..|...|..+..+.-|.++|.|..
T Consensus         3 p~~cpic~qrfkrkdrmsyhvrshdg~v   30 (32)
T d2epqa1           3 PYSCPVCGLRFKRKDRMSYHVRSHDGSV   30 (32)
T ss_dssp             SSEETTTTEECSCHHHHHHHHHHHSCCC
T ss_pred             CcccchHHHHhhccccceEeeecccCcc
Confidence            7999999999999999999999998853

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.27  E-value=4.4e-07  Score=26.35  Aligned_cols=23  Identities=30%  Similarity=0.655  Sum_probs=17.7

Q ss_pred             CccCCCCCcccccchHHHHHHHh
Q psy12023         30 KYQCPQCPYRAKQNAHLTTHMAI   52 (55)
Q Consensus        30 ~~~c~~c~~~f~~~~~l~~h~~~   52 (55)
                      ||+|..|...|.+...|+.|+-.
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            38888888888888888887643

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.26  E-value=4.2e-07  Score=29.52  Aligned_cols=24  Identities=25%  Similarity=0.584  Sum_probs=21.0

Q ss_pred             ccCCCCCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+|..|++.|.....|-.|++.|-
T Consensus         6 ~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           6 YTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             EECTTTCCEESSHHHHHHHHHTTC
T ss_pred             cCCCCCCCccCCcccccchHhhhc
Confidence            899999999999999999988763

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=2.8e-07  Score=28.41  Aligned_cols=24  Identities=17%  Similarity=0.420  Sum_probs=19.8

Q ss_pred             CccCCC--CCcccccchHHHHHH-Hhh
Q psy12023         30 KYQCPQ--CPYRAKQNAHLTTHM-AIK   53 (55)
Q Consensus        30 ~~~c~~--c~~~f~~~~~l~~h~-~~~   53 (55)
                      ||.|+.  |.++|+..+....|+ |+|
T Consensus         2 PY~C~~~gC~KafsNsSDraKHqnRTH   28 (31)
T d2glia4           2 PYMCEHEGCSKAFSNASDRAKHQNRTH   28 (31)
T ss_dssp             CEECCSTTCCCEESSSSTTHHHHHHTT
T ss_pred             CccccCCChhhhhcchhhhhhhccccc
Confidence            388865  999999999999997 665

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.24  E-value=4.2e-07  Score=28.00  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=16.0

Q ss_pred             CccCCCCCcccccchHHHHHHHh
Q psy12023         30 KYQCPQCPYRAKQNAHLTTHMAI   52 (55)
Q Consensus        30 ~~~c~~c~~~f~~~~~l~~h~~~   52 (55)
                      ||.|.+|++.|.++.-|-+|+..
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qK   23 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQK   23 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTT
T ss_pred             CcccccccchhhHHHHHHHHHHH
Confidence            47777777777777777777553

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.8e-07  Score=27.45  Aligned_cols=25  Identities=12%  Similarity=0.421  Sum_probs=22.9

Q ss_pred             CCCCccccccccchhhHHhHHHHHh
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFEC   25 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~   25 (55)
                      |++|..|...-...+.|..|+++|.
T Consensus         3 p~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           3 PYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CcccccccchhcchhhHhhhhhccc
Confidence            7899999999999999999999874

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=6.6e-07  Score=26.95  Aligned_cols=23  Identities=35%  Similarity=0.752  Sum_probs=19.4

Q ss_pred             CccCCCCCcccccchHHHHHHHh
Q psy12023         30 KYQCPQCPYRAKQNAHLTTHMAI   52 (55)
Q Consensus        30 ~~~c~~c~~~f~~~~~l~~h~~~   52 (55)
                      ||.|..|...|....+|..|++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            48888899999999999988863

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.17  E-value=6.8e-07  Score=26.89  Aligned_cols=26  Identities=23%  Similarity=0.580  Sum_probs=17.4

Q ss_pred             CCCccccccccchhhHHhHHHHHhCC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQ   27 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~   27 (55)
                      |.|..|...|...-.|..|+.+|+|+
T Consensus         5 ftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           5 FTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             EEeHHHHHHHHHHHhheeeeecccCC
Confidence            45666777777777777777766663

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.1e-06  Score=26.19  Aligned_cols=23  Identities=30%  Similarity=0.671  Sum_probs=19.7

Q ss_pred             ccCCCCCcccccchHHHHHHHhh
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      .+|+.|....+..+.|+.|.|+|
T Consensus         3 ekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           3 EKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGG
T ss_pred             ccCcccccccCcHHHHHHhhccc
Confidence            67888888888888999998887

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1e-06  Score=26.62  Aligned_cols=25  Identities=32%  Similarity=0.741  Sum_probs=21.0

Q ss_pred             CccCCCCCcccccchHHHHHHHhhc
Q psy12023         30 KYQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        30 ~~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||+|+.|...-.+.++|..|++.-|
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~kk~H   26 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMKKFH   26 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CcccceecccccCcchHHHHHHHHc
Confidence            4899999998899999999987544

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.09  E-value=3.3e-06  Score=24.79  Aligned_cols=26  Identities=23%  Similarity=0.439  Sum_probs=19.5

Q ss_pred             CCccccccccchhhHHhHHHHHhCCC
Q psy12023          3 MCDVCGKGYKYKNGIYRHKKFECGQE   28 (55)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~~~~~~~~~   28 (55)
                      +|+.|.+.|.++-.|..|-+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            47777788887777777777777753

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=98.06  E-value=1.7e-06  Score=25.97  Aligned_cols=24  Identities=25%  Similarity=0.613  Sum_probs=20.5

Q ss_pred             CCCCcc--ccccccchhhHHhHHHHH
Q psy12023          1 MFMCDV--CGKGYKYKNGIYRHKKFE   24 (55)
Q Consensus         1 p~~c~~--c~~~~~~~~~~~~~~~~~   24 (55)
                      ||+|..  |++.|...+.|++|..+|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            677764  899999999999998876

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=1.8e-06  Score=25.02  Aligned_cols=22  Identities=18%  Similarity=0.519  Sum_probs=20.0

Q ss_pred             CCCCccccccccchhhHHhHHH
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKK   22 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~   22 (55)
                      ||+|..|...|-.+.+|..|+.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            7899999999999999998875

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=6.5e-06  Score=24.70  Aligned_cols=24  Identities=33%  Similarity=0.699  Sum_probs=22.3

Q ss_pred             ccCCCCCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.|+.|+.....++.|..|.|.|.
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT   25 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHT   25 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTS
T ss_pred             ccccccCcccCCHHHHHHHHHHhc
Confidence            789999999999999999999885

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=4.2e-06  Score=28.31  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=20.8

Q ss_pred             ccCCCCCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.|..|+|.|.....|++|+.-|.
T Consensus         7 ~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           7 LPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeccccccccCCHHHHhHhHHhcC
Confidence            789999999999999999987663

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=6.7e-06  Score=24.31  Aligned_cols=21  Identities=24%  Similarity=0.588  Sum_probs=13.5

Q ss_pred             CccCCCCCcccccchHHHHHH
Q psy12023         30 KYQCPQCPYRAKQNAHLTTHM   50 (55)
Q Consensus        30 ~~~c~~c~~~f~~~~~l~~h~   50 (55)
                      ||+|..||+.+.+..+|..|.
T Consensus         1 pf~c~kcgkcyfrkenllehe   21 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHE   21 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHH
Confidence            366666776666666666664

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.6e-05  Score=23.98  Aligned_cols=26  Identities=15%  Similarity=0.299  Sum_probs=22.8

Q ss_pred             CCCCccccccccchhhHHhHHHHHhC
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFECG   26 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~~~   26 (55)
                      ||+|..|.......+.|..|+....+
T Consensus         2 py~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             Cccccccccccccchhhhhhhhcccc
Confidence            79999999999999999999886544

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.92  E-value=2.2e-06  Score=26.35  Aligned_cols=23  Identities=17%  Similarity=0.628  Sum_probs=20.7

Q ss_pred             CCCCccccccccchhhHHhHHHH
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKF   23 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~   23 (55)
                      ||.|..|++.|.....+.+|+..
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qK   23 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQK   23 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTT
T ss_pred             CcccccccchhhHHHHHHHHHHH
Confidence            78999999999999999988763

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=1.2e-05  Score=24.06  Aligned_cols=24  Identities=21%  Similarity=0.517  Sum_probs=22.2

Q ss_pred             ccCCCCCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.|.+|...|.++..|+.|+..|.
T Consensus         5 ftcs~cqe~f~rrmelr~hmvsht   28 (30)
T d2dlqa3           5 FTCSVCQETFRRRMELRLHMVSHT   28 (30)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHS
T ss_pred             EEeHHHHHHHHHHHhheeeeeccc
Confidence            899999999999999999998774

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=4.5e-06  Score=25.08  Aligned_cols=24  Identities=25%  Similarity=0.570  Sum_probs=21.6

Q ss_pred             CCCCccccccccchhhHHhHHHHH
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKFE   24 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~~   24 (55)
                      ||.|..|.-.|..+..|..|+.+-
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            789999999999999999998753

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.84  E-value=3.6e-06  Score=27.27  Aligned_cols=27  Identities=11%  Similarity=0.463  Sum_probs=24.0

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQE   28 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~   28 (55)
                      |.|..|++.|.+...|-.|+..|..++
T Consensus         6 ~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           6 YTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             EECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             cCCCCCCCccCCcccccchHhhhcchH
Confidence            689999999999999999999886654

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=7.9e-06  Score=26.74  Aligned_cols=23  Identities=22%  Similarity=0.723  Sum_probs=20.5

Q ss_pred             CCCCccccccccchhhHHhHHHH
Q psy12023          1 MFMCDVCGKGYKYKNGIYRHKKF   23 (55)
Q Consensus         1 p~~c~~c~~~~~~~~~~~~~~~~   23 (55)
                      ||.|..|++.|-+...+.+|...
T Consensus         5 PYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           5 PYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHH
T ss_pred             ceeccchhhhhhhHHHHHHhhhh
Confidence            79999999999999999888663

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.75  E-value=1.9e-05  Score=26.59  Aligned_cols=29  Identities=28%  Similarity=0.755  Sum_probs=25.0

Q ss_pred             CCCCCccCCCCCcccccchHHHHHHHhhcC
Q psy12023         26 GQEPKYQCPQCPYRAKQNAHLTTHMAIKHY   55 (55)
Q Consensus        26 ~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~   55 (55)
                      ++.| ..|++|+....++.+|++|....||
T Consensus        21 s~qp-atcpic~avirqsrnlrrhlel~hf   49 (54)
T d1yuja_          21 SEQP-ATCPICYAVIRQSRNLRRHLELRHF   49 (54)
T ss_dssp             TSCC-EECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             ccCC-CCCchHHHHHHHHHHHHHHHHHHhh
Confidence            3445 8999999999999999999988776

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=1.8e-05  Score=25.49  Aligned_cols=26  Identities=31%  Similarity=0.720  Sum_probs=21.6

Q ss_pred             CCCCccC--CCCCcccccchHHHHHHHhh
Q psy12023         27 QEPKYQC--PQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        27 ~~~~~~c--~~c~~~f~~~~~l~~h~~~~   53 (55)
                      ++| |.|  +-|+..|.....|..|...|
T Consensus         4 dkP-F~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKP-FLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCC-EECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCc-eecCCCCccccccchHHHHHhhhhh
Confidence            455 999  56999999999999997765

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=1.3e-05  Score=25.16  Aligned_cols=20  Identities=15%  Similarity=0.536  Sum_probs=17.6

Q ss_pred             ccCCCCCcccccchHHHHHH
Q psy12023         31 YQCPQCPYRAKQNAHLTTHM   50 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~   50 (55)
                      |.|..|+++|.++..+.+|.
T Consensus         5 fvcskcgktftrrntm~rha   24 (37)
T d1x6ha1           5 FVCSKCGKTFTRRNTMARHA   24 (37)
T ss_dssp             EECSSSCCEESCHHHHHHHH
T ss_pred             eeecccccchhcchHHHHHh
Confidence            88999999999998888874

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.63  E-value=2.6e-05  Score=23.41  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=14.5

Q ss_pred             cccccccchhhHHhHHHHHhCC
Q psy12023          6 VCGKGYKYKNGIYRHKKFECGQ   27 (55)
Q Consensus         6 ~c~~~~~~~~~~~~~~~~~~~~   27 (55)
                      -|.+.|.....|.+|...|+|+
T Consensus         9 gc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           9 GCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             SCCCEESSTTHHHHHHHHHHTC
T ss_pred             cccccchhhhhhhhhhccccCC
Confidence            3666777777777776666653

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.61  E-value=3.4e-05  Score=22.30  Aligned_cols=24  Identities=33%  Similarity=0.724  Sum_probs=19.5

Q ss_pred             ccCCCCCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |.|+.|-+.|.+..++..|.++.|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            678888888888888888887655

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=4.6e-05  Score=23.99  Aligned_cols=24  Identities=17%  Similarity=0.257  Sum_probs=19.4

Q ss_pred             CccccccccchhhHHhHHHHHhCC
Q psy12023          4 CDVCGKGYKYKNGIYRHKKFECGQ   27 (55)
Q Consensus         4 c~~c~~~~~~~~~~~~~~~~~~~~   27 (55)
                      |..-++.|.....|..|++.|+||
T Consensus        10 C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          10 CSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCCcchhHHHHHHHHhhcCCC
Confidence            555567788888899999999885

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00015  Score=21.37  Aligned_cols=22  Identities=23%  Similarity=0.683  Sum_probs=18.0

Q ss_pred             ccCCCCCcccccchHHHHHHHh
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAI   52 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~   52 (55)
                      |+|+-|+-...+.+.|..|++-
T Consensus         3 ~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhhh
Confidence            7788888888888888888774

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00018  Score=21.31  Aligned_cols=20  Identities=15%  Similarity=0.360  Sum_probs=16.0

Q ss_pred             CCCcccccchHHHHHHHhhc
Q psy12023         35 QCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        35 ~c~~~f~~~~~l~~h~~~~~   54 (55)
                      .|.+.|+..+.++.|+.+|.
T Consensus         8 gC~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGGS
T ss_pred             cHHHHhhchHHHHHHhhccC
Confidence            48888888888888887764

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.13  E-value=0.0002  Score=22.16  Aligned_cols=20  Identities=30%  Similarity=0.717  Sum_probs=12.2

Q ss_pred             CCCccccccccchhhHHhHH
Q psy12023          2 FMCDVCGKGYKYKNGIYRHK   21 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~   21 (55)
                      |.|..||-.|.+.+.|..|+
T Consensus         9 f~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           9 FMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CBCTTTCCBCSCHHHHHHHT
T ss_pred             eeccccceeecChhHHHhhh
Confidence            45666666666666665554

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00057  Score=22.99  Aligned_cols=25  Identities=24%  Similarity=0.502  Sum_probs=21.5

Q ss_pred             CCCccccccccchhhHHhHHHHHhC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECG   26 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~   26 (55)
                      +.|..|++.|.....|..|..-|..
T Consensus         7 ~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           7 LPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             eeccccccccCCHHHHhHhHHhcCc
Confidence            5799999999999999999887654

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.62  E-value=0.0011  Score=19.34  Aligned_cols=20  Identities=20%  Similarity=0.293  Sum_probs=15.4

Q ss_pred             CCCCcccccchHHHHHHHhh
Q psy12023         34 PQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        34 ~~c~~~f~~~~~l~~h~~~~   53 (55)
                      ..|+++|.....|..|+-.|
T Consensus         7 e~c~kafkkhnqlkvhqf~h   26 (28)
T d2j7ja1           7 ENCGKAFKKHNQLKVHQFSH   26 (28)
T ss_dssp             TTCCCEESSHHHHHHHHHHH
T ss_pred             cCchHHHhhccceEEEeecc
Confidence            46888888888888887654

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.002  Score=19.11  Aligned_cols=21  Identities=24%  Similarity=0.380  Sum_probs=14.9

Q ss_pred             CCCCcccccchHHHHHHHhhc
Q psy12023         34 PQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        34 ~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      +.|++.|+.+.-|.-|.+..|
T Consensus         6 ~gc~kifsnrqylnhh~kyqh   26 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKYQH   26 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHHGG
T ss_pred             CCchhhhccHHHHHhHHHHHH
Confidence            468888888887777765443

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0033  Score=18.66  Aligned_cols=21  Identities=33%  Similarity=0.684  Sum_probs=13.7

Q ss_pred             CCCccccccccchhhHHhHHH
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKK   22 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~   22 (55)
                      |.|..||+.+.+...++-|..
T Consensus         3 ftc~hcgkqlks~~gmkyhvm   23 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVM   23 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHH
T ss_pred             eechhHHHHHhhccCceEEEe
Confidence            567777777776666655544

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.00085  Score=24.04  Aligned_cols=26  Identities=12%  Similarity=0.376  Sum_probs=23.2

Q ss_pred             CCCccccccccchhhHHhHHHHHhCC
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQ   27 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~   27 (55)
                      |+|..|+..|.....|..|...|+.+
T Consensus        19 yQC~HCd~K~~s~~el~~hl~~hnee   44 (75)
T d1x6fa1          19 YQCKHCDSKLQSTAELTSHLNIHNEE   44 (75)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHHHH
T ss_pred             eeechhHHHHhhHHHHHHHHHhccHH
Confidence            78999999999999999999988763

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0007  Score=24.54  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=18.9

Q ss_pred             ccCCCCCcccccchHHHHHHHh
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAI   52 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~   52 (55)
                      |-|..|++.|.....|..|++.
T Consensus        16 fYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHTTC
T ss_pred             EecccccCccCCHHHHHHHHcc
Confidence            7899999999999999988653

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.71  E-value=0.0034  Score=19.56  Aligned_cols=27  Identities=19%  Similarity=0.506  Sum_probs=20.6

Q ss_pred             CCCCCccCCCCCcccccchHHHHHHHhh
Q psy12023         26 GQEPKYQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        26 ~~~~~~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      |+.- |+|.+|.+.+..-+++-+|-..-
T Consensus         5 g~~~-yRC~~C~r~YTHISNFCRHyvtS   31 (37)
T d2drpa1           5 GEHT-YRCKVCSRVYTHISNFCRHYVTS   31 (37)
T ss_dssp             ETTE-EECTTTCCEESSHHHHHHHHHHH
T ss_pred             cCcE-EEeehhhHHHHHHHHHHHHHHhh
Confidence            3344 89999999999988888775543

>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF0610-like
domain: Hypothetical protein PF0610
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.98  E-value=0.01  Score=23.20  Aligned_cols=10  Identities=30%  Similarity=0.760  Sum_probs=5.5

Q ss_pred             CCCccccccc
Q psy12023          2 FMCDVCGKGY   11 (55)
Q Consensus         2 ~~c~~c~~~~   11 (55)
                      -.|..||..|
T Consensus        68 p~CrkCGfvF   77 (105)
T d2gmga1          68 AQCRKCGFVF   77 (105)
T ss_dssp             CBBTTTCCBC
T ss_pred             hhhhhcCCee
Confidence            3455566555

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.77  E-value=0.016  Score=17.41  Aligned_cols=23  Identities=22%  Similarity=0.393  Sum_probs=17.8

Q ss_pred             ccccccccchhhHHhHHHHHhCC
Q psy12023          5 DVCGKGYKYKNGIYRHKKFECGQ   27 (55)
Q Consensus         5 ~~c~~~~~~~~~~~~~~~~~~~~   27 (55)
                      ..|+..+.....|..|...|+|+
T Consensus         9 ~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           9 ADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             GGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CCcchhhccchhhhHHhhhhcCC
Confidence            46777787777788888888874

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.028  Score=18.80  Aligned_cols=20  Identities=15%  Similarity=0.464  Sum_probs=16.9

Q ss_pred             ccCCCCCcccccchHHHHHH
Q psy12023         31 YQCPQCPYRAKQNAHLTTHM   50 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~   50 (55)
                      -+|..|+..++...+++.|.
T Consensus         7 ~eC~lC~vKYs~~~SvrdHi   26 (48)
T d2yrka1           7 PECTLCGVKYSARLSIRDHI   26 (48)
T ss_dssp             SCCTTTTCCCCSSSCHHHHH
T ss_pred             ccCcccceeeeeecchHhhh
Confidence            58999999988888888774

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.96  E-value=0.016  Score=18.45  Aligned_cols=24  Identities=29%  Similarity=0.883  Sum_probs=15.3

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYR   39 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~   39 (55)
                      |.|..||...             .++.| -.|++|+..
T Consensus         6 ~~C~vCG~i~-------------~g~~P-~~CPvCg~~   29 (37)
T d1nnqa2           6 YICPICGYTA-------------VDEAP-EYCPVCGAP   29 (37)
T ss_dssp             EECTTTCCEE-------------ESCCC-SBCTTTCCB
T ss_pred             EECCCCCCEe-------------cCCCC-CcCCCCCCc
Confidence            4577777653             34434 789998853

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.88  E-value=0.0085  Score=21.30  Aligned_cols=34  Identities=21%  Similarity=0.516  Sum_probs=18.5

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYR   39 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~   39 (55)
                      |.|+.|++.|........   ....... |.|..|+..
T Consensus        15 y~Cp~C~~~ys~Lda~~L---~d~~~~~-F~C~~C~~e   48 (62)
T d1vd4a_          15 FKCPVCSSTFTDLEANQL---FDPMTGT-FRCTFCHTE   48 (62)
T ss_dssp             EECSSSCCEEEHHHHHHH---EETTTTE-EBCSSSCCB
T ss_pred             eECCCCCCCcchhhHHHh---cCcCCCe-EEecCCCCE
Confidence            567777777765443322   2222223 777777643

>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=93.43  E-value=0.0037  Score=20.77  Aligned_cols=24  Identities=29%  Similarity=0.668  Sum_probs=15.2

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPY   38 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~   38 (55)
                      |.|..||...             .|+.+|-.|++|+.
T Consensus         9 W~C~~CGyi~-------------~g~~aP~~CPvC~~   32 (44)
T d1lkoa2           9 WRCRNCGYVH-------------EGTGAPELCPACAH   32 (44)
T ss_dssp             EEETTTCCEE-------------EEEECCSBCTTTCC
T ss_pred             EEcCCCCcEE-------------ECCCCCCcCCCCCC
Confidence            4677777654             33344478888875

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=92.51  E-value=0.029  Score=17.72  Aligned_cols=24  Identities=29%  Similarity=0.672  Sum_probs=15.0

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYR   39 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~   39 (55)
                      |.|..||...             .++ +|-.|++|+..
T Consensus         6 ~vC~vCGyi~-------------~g~-~Pe~CPvCg~~   29 (36)
T d1yuza2           6 HLCPICGYIH-------------KGE-DFEKCPICFRP   29 (36)
T ss_dssp             EECSSSCCEE-------------ESS-CCSBCTTTCCB
T ss_pred             EECCCCCCEe-------------eCC-CCCcCCCCCCc
Confidence            4567777543             343 34789988853

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.73  E-value=0.17  Score=20.22  Aligned_cols=24  Identities=17%  Similarity=0.301  Sum_probs=19.0

Q ss_pred             ccCCCCCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ..|-.|.+.|.....+-.|++..|
T Consensus        16 ~~CLFCd~~f~s~~~~l~H~k~~H   39 (121)
T d1wira_          16 TPCLFCDRLFASAEETFSHCKLEH   39 (121)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHSS
T ss_pred             ceecccCCccCCHHHHHHHHHHhh
Confidence            678888888888888888887655

>d2ct5a1 g.37.1.6 (A:8-67) Zinc finger BED domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: BED zinc finger
domain: Zinc finger BED domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.66  E-value=0.11  Score=18.13  Aligned_cols=24  Identities=21%  Similarity=0.441  Sum_probs=18.3

Q ss_pred             ccCCCCCccccc---chHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQ---NAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~---~~~l~~h~~~~~   54 (55)
                      ..|..|.+.+..   -++|+.|++.+|
T Consensus        23 i~C~lC~k~i~~~GNTtNl~~HL~~rH   49 (60)
T d2ct5a1          23 IYCRICMAQIAYSGNTSNLSYHLEKNH   49 (60)
T ss_dssp             CEETTTTEECCCCSSTHHHHHHHHHSC
T ss_pred             hHHHHHHHHhcccCCcchHHHHHHhcC
Confidence            578899887654   578888888765

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=90.36  E-value=0.053  Score=17.95  Aligned_cols=35  Identities=26%  Similarity=0.676  Sum_probs=18.8

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCcc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYR   39 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~   39 (55)
                      |.|..||..+.....-  -..-...... |.|++|+..
T Consensus         4 y~C~~CgyiYd~~~Gd--gt~Fe~LP~d-w~CP~C~a~   38 (45)
T d6rxna_           4 YVCNVCGYEYDPAEHD--NVPFDQLPDD-WCCPVCGVS   38 (45)
T ss_dssp             EEETTTCCEECGGGGT--TCCGGGSCTT-CBCTTTCCB
T ss_pred             eEeCCCCeEECcccCC--CCCHHHCCCC-CCCcCCCCc
Confidence            6788898776543211  0000111233 789999854

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.84  E-value=0.042  Score=17.15  Aligned_cols=22  Identities=18%  Similarity=0.289  Sum_probs=14.1

Q ss_pred             ccCCCCCcccccchHHHHHHHh
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAI   52 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~   52 (55)
                      ..|-+|-++|..+-++-+|+..
T Consensus         4 ltclecmrtfkssfsiwrhqve   25 (41)
T d1wjpa3           4 LTCLECMRTFKSSFSIWRHQVE   25 (41)
T ss_dssp             GEEGGGTEECSSHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhhhe
Confidence            3466677777776666666653

>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=88.93  E-value=0.04  Score=20.14  Aligned_cols=10  Identities=40%  Similarity=1.198  Sum_probs=5.6

Q ss_pred             ccCCCCCccc
Q psy12023         31 YQCPQCPYRA   40 (55)
Q Consensus        31 ~~c~~c~~~f   40 (55)
                      +.|..|++.|
T Consensus        46 W~C~kC~~~~   55 (73)
T d1vqoz1          46 WQCSYCDYKF   55 (73)
T ss_dssp             EEETTTCCEE
T ss_pred             EECCCCCCEE
Confidence            5555555554

>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=88.90  E-value=0.041  Score=20.13  Aligned_cols=10  Identities=30%  Similarity=1.125  Sum_probs=5.5

Q ss_pred             ccCCCCCccc
Q psy12023         31 YQCPQCPYRA   40 (55)
Q Consensus        31 ~~c~~c~~~f   40 (55)
                      +.|..|++.|
T Consensus        46 W~C~kC~~~~   55 (73)
T d1jj2y_          46 WMCGHCGYKI   55 (73)
T ss_dssp             EEETTTCCEE
T ss_pred             EECCCCCCEE
Confidence            5555555554

>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: RNA polymerase subunits
family: RBP12 subunit of RNA polymerase II
domain: RBP12 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.66  E-value=0.11  Score=17.24  Aligned_cols=27  Identities=19%  Similarity=0.667  Sum_probs=16.8

Q ss_pred             CCCccccccccchhhHHhHHHHHhCCCCCccCCCCCccc
Q psy12023          2 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRA   40 (55)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f   40 (55)
                      |.|.+|+.....+.          + .+ ..|..||...
T Consensus         5 YiCgeCg~~~~l~~----------~-d~-irCreCG~RI   31 (46)
T d1twfl_           5 YICAECSSKLSLSR----------T-DA-VRCKDCGHRI   31 (46)
T ss_dssp             EECSSSCCEECCCT----------T-ST-TCCSSSCCCC
T ss_pred             EEcccCCCceEeCC----------C-Cc-EEeccCCcEE
Confidence            56777876554322          1 34 7899898644

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=88.50  E-value=0.1  Score=17.98  Aligned_cols=19  Identities=21%  Similarity=0.434  Sum_probs=15.4

Q ss_pred             ccCCCCCcccccchHHHHH
Q psy12023         31 YQCPQCPYRAKQNAHLTTH   49 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h   49 (55)
                      .-|.+|...|+....-+.|
T Consensus        22 k~C~lCn~~Fns~~~AqsH   40 (55)
T d1zu1a2          22 KCCPVCNMTFSSPVVAESH   40 (55)
T ss_dssp             TEETTTTEECSSHHHHHHH
T ss_pred             hhhhhhhcccCCHHHHHHH
Confidence            4589999999888776666

>d1wjpa1 g.37.1.1 (A:1-42) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.48  E-value=0.19  Score=15.80  Aligned_cols=23  Identities=22%  Similarity=0.424  Sum_probs=16.4

Q ss_pred             CccCCCCCcccccchHHHHHHHh
Q psy12023         30 KYQCPQCPYRAKQNAHLTTHMAI   52 (55)
Q Consensus        30 ~~~c~~c~~~f~~~~~l~~h~~~   52 (55)
                      .|.|..|...+.....--.|.|.
T Consensus        16 ~y~crlcnakl~slleqgnherl   38 (42)
T d1wjpa1          16 VYQCRLCNAKLSSLLEQGSHERL   38 (42)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             eeeeeehhhhHHHHHHcccHHhH
Confidence            38999999888766555556553

>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
domain: DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.45  E-value=0.13  Score=16.06  Aligned_cols=13  Identities=15%  Similarity=0.411  Sum_probs=9.4

Q ss_pred             ccCCCCCcccccc
Q psy12023         31 YQCPQCPYRAKQN   43 (55)
Q Consensus        31 ~~c~~c~~~f~~~   43 (55)
                      ..|..||+.|..+
T Consensus         6 ~~C~eCg~~F~DS   18 (36)
T d1d4ua2           6 VICEECGKEFMDS   18 (36)
T ss_dssp             EECTTTCCEESCS
T ss_pred             HHHHHhCcHHHHH
Confidence            4588888888654

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=87.29  E-value=0.22  Score=21.22  Aligned_cols=23  Identities=22%  Similarity=0.531  Sum_probs=17.4

Q ss_pred             ccCCCCCcccccchHHHHHHHhhc
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      |+|..|++-. .-.++..|++.|.
T Consensus       147 YKCe~CgKYv-Die~~~~H~k~HG  169 (218)
T d2czra1         147 YKCEECGKYV-DIENLEAHLREHG  169 (218)
T ss_dssp             EECTTTCCEE-EGGGHHHHHHTTT
T ss_pred             eehhhcCcee-cHHHHHHHHHHcC
Confidence            7899999854 4556888888764

>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: TFIIH p44 subunit cysteine-rich domain
domain: TFIIH p44 subunit cysteine-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.26  E-value=0.032  Score=19.56  Aligned_cols=23  Identities=17%  Similarity=0.408  Sum_probs=18.4

Q ss_pred             ccCCCCCcccccchHHHHHHHhh
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMAIK   53 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~~~   53 (55)
                      |+|+.|...|...-.+-.|..+|
T Consensus        31 y~C~~C~~~FC~dCD~fiHe~lh   53 (59)
T d1z60a1          31 YVCAVCQNVFCVDCDVFVHDSLH   53 (59)
T ss_dssp             ECCTTTTCCBCHHHHHTTTTTSC
T ss_pred             EECcCCCCccccccchhhhhhhc
Confidence            89999999998877777666554

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=87.25  E-value=0.2  Score=14.63  Aligned_cols=21  Identities=24%  Similarity=0.681  Sum_probs=15.9

Q ss_pred             ccC--CCCCcccccchHHHHHHH
Q psy12023         31 YQC--PQCPYRAKQNAHLTTHMA   51 (55)
Q Consensus        31 ~~c--~~c~~~f~~~~~l~~h~~   51 (55)
                      |.|  +.|...|...+++..|-.
T Consensus         3 f~cdsd~cdl~fttkanmkkhfn   25 (31)
T d1tf3a3           3 FTCDSDGCDLRFTTKANMKKHFN   25 (31)
T ss_dssp             EECSSSSCCCEESSHHHHHHHHH
T ss_pred             ccccCCCcceEEeehHHHHHHHh
Confidence            555  458889999998888854

>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 292, ZNF292
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.17  E-value=0.3  Score=16.54  Aligned_cols=25  Identities=24%  Similarity=0.437  Sum_probs=18.7

Q ss_pred             CccC--CCCCcccccchHHHHHHHhhc
Q psy12023         30 KYQC--PQCPYRAKQNAHLTTHMAIKH   54 (55)
Q Consensus        30 ~~~c--~~c~~~f~~~~~l~~h~~~~~   54 (55)
                      ||+|  +.|..+|.-..+|.-|-+..|
T Consensus        20 pyrcvhqgc~aaftiq~nlilhy~avh   46 (61)
T d1x3ca1          20 PYRCVHQGCFAAFTIQQNLILHYQAVH   46 (61)
T ss_dssp             SCBCCSTTCCCBCSSHHHHHHHHHHHS
T ss_pred             ceeeeccchhhhhhhhhhHHHHHHHHh
Confidence            3888  568899998888887765433

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.14  E-value=0.23  Score=15.25  Aligned_cols=21  Identities=33%  Similarity=0.559  Sum_probs=17.5

Q ss_pred             ccCCCCCcccccchHHHHHHH
Q psy12023         31 YQCPQCPYRAKQNAHLTTHMA   51 (55)
Q Consensus        31 ~~c~~c~~~f~~~~~l~~h~~   51 (55)
                      |.|+.|-+-......+.+|+.
T Consensus         8 yiCEfCLKYmks~~~l~RH~~   28 (33)
T d1m36a_           8 YLCEFCLKYMKSRTILQQHMK   28 (33)
T ss_dssp             EECSSSCCEESCHHHHHHHHH
T ss_pred             eeehhhhhhhCCHHHHHHHHH
Confidence            888888888888888888875

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.03  E-value=0.25  Score=15.38  Aligned_cols=19  Identities=26%  Similarity=0.754  Sum_probs=11.9

Q ss_pred             CccccccccchhhHHhHHH
Q psy12023          4 CDVCGKGYKYKNGIYRHKK   22 (55)
Q Consensus         4 c~~c~~~~~~~~~~~~~~~   22 (55)
                      |..|+-.|...+.+..|..
T Consensus        11 C~~CDI~Fn~~~T~~aHKk   29 (36)
T d1fu9a_          11 CSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             ETTTTEECSSHHHHHHHHH
T ss_pred             HhhCCceehhHHHHHHHHH
Confidence            5566666766666666643

>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: vps27p protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.03  E-value=0.34  Score=17.03  Aligned_cols=27  Identities=22%  Similarity=0.492  Sum_probs=17.0

Q ss_pred             CCccccccccchhhHHhHHHHHhCCCCCccCCCCCccccc
Q psy12023          3 MCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQ   42 (55)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~   42 (55)
                      .|..|++.|...            .++ ..|..||..|..
T Consensus         7 ~C~~C~~~F~~~------------~rk-hhCr~CG~~fC~   33 (67)
T d1vfya_           7 ACMICSKKFSLL------------NRK-HHCRSCGGVFCQ   33 (67)
T ss_dssp             BCTTTCCBCBTT------------BCC-EECTTTCCEECG
T ss_pred             ccccCCCcccCc------------ccc-cccccCCCEecc
Confidence            366777777421            244 678888877754

>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Zinc finger FYVE domain containing protein 19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.81  E-value=0.18  Score=18.89  Aligned_cols=27  Identities=19%  Similarity=0.476  Sum_probs=15.5

Q ss_pred             CCccccccccchhhHHhHHHHHhCCCCCccCCCCCccccc
Q psy12023          3 MCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQ   42 (55)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~   42 (55)
                      +|..|++.|...            .++ ..|..||..|..
T Consensus        11 ~C~~C~~~Fs~~------------~rr-hhCr~CG~vfC~   37 (88)
T d1wfka_          11 RCYGCAVKFTLF------------KKE-YGCKNCGRAFCN   37 (88)
T ss_dssp             BCTTTCCBCCSS------------SCE-EECSSSCCEEET
T ss_pred             cCcccCchhccc------------ccc-ccccccChhhCh
Confidence            466777776421            133 567777766643

>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Rififylin (FYVE-RING finger protein Sakura)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.72  E-value=0.42  Score=15.96  Aligned_cols=27  Identities=19%  Similarity=0.497  Sum_probs=17.1

Q ss_pred             CCccccccccchhhHHhHHHHHhCCCCCccCCCCCccccc
Q psy12023          3 MCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQ   42 (55)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~   42 (55)
                      .|..|+..|....            +. ..|..||+.|..
T Consensus         2 ~C~~C~~~F~~~~------------rk-hhCr~CG~~fC~   28 (51)
T d1y02a2           2 SCKSCGAHFANTA------------RK-QTCLDCKKNFCM   28 (51)
T ss_dssp             CCTTTCCCCSSGG------------GC-EECTTTCCEECG
T ss_pred             CccccCCcccCCc------------cC-cccccCCcccCc
Confidence            4677787775321            34 677788877754

>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.65  E-value=0.47  Score=16.49  Aligned_cols=27  Identities=30%  Similarity=0.613  Sum_probs=16.9

Q ss_pred             CCccccccccchhhHHhHHHHHhCCCCCccCCCCCccccc
Q psy12023          3 MCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQ   42 (55)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~   42 (55)
                      .|..|++.|...            .++ ..|..||..|..
T Consensus        10 ~C~~C~~~F~~~------------~rr-HHCR~CG~v~C~   36 (64)
T d1joca1          10 NCMACGKGFSVT------------VRR-HHCRQCGNIFCA   36 (64)
T ss_dssp             BCTTTCCBCCSS------------SCC-EECTTTCCEECG
T ss_pred             cCcCcCCcccCC------------ccc-cchhhhCCeecc
Confidence            366777777431            244 678888877654

>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.32  E-value=0.53  Score=16.81  Aligned_cols=12  Identities=17%  Similarity=0.290  Sum_probs=7.9

Q ss_pred             ccCCCCCccccc
Q psy12023         31 YQCPQCPYRAKQ   42 (55)
Q Consensus        31 ~~c~~c~~~f~~   42 (55)
                      ..|..||..|..
T Consensus        30 hhCr~CG~~~C~   41 (72)
T d1dvpa2          30 HHCRNCGQVFCG   41 (72)
T ss_dssp             EECTTTCCEECS
T ss_pred             ccccccCCeeCh
Confidence            667777776643

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=81.40  E-value=0.5  Score=14.81  Aligned_cols=32  Identities=9%  Similarity=-0.127  Sum_probs=18.5

Q ss_pred             CCccccccccchhhHHhHHHHHhCCCCCccCCCCCcccccc
Q psy12023          3 MCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQN   43 (55)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~f~~~   43 (55)
                      .|..||..+....        ....+. -.|+.||..+-++
T Consensus         4 vc~~cG~~Yh~~~--------~pPk~~-g~CD~cg~~L~qR   35 (37)
T d2ak3a2           4 IHPGSGRVYNIEF--------NPPKTM-GIDDLTGEPLVQR   35 (37)
T ss_dssp             EETTTTEEEETTT--------BCCSST-TBCTTTCCBCBCC
T ss_pred             eeCCcCChhhhcc--------CCcccc-CCccCCCCcCEec
Confidence            4677777664322        112223 6788898776554