Psyllid ID: psy12035

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
MAYTQPILDYGCSIFMNANKKYLSHLDTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKLLDFYIQDDLKNHLRKNIVKLYNDQWTNIQNNKLRTIKDNTTLWKTSLRKIRNEEILLTRLRIGHTRITHSYLFTKTPHPICTCGFPLTVKHIFECNKYKKFREKLSLPSIEIALSDNENMAEKTIKYMKMINLYSKV
Secondary Structure (PSIPRED)
ccEEEEccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccEEccccccHHHHHHcccccHHHHccccHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccHEcccHEEEccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccHHHHHcccHHHHHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccccccccccHHHHHHHHHHHccccHHHHHHccccccccccccccccEEEEEEcccHHHHHHHcccccHHHHccccHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MAYTQPILDYGCSIFMNANKKYLSHLDTIHHMGIRLISRalksspvnslyaesailPLSVRRRLLFSNIIAKQEYYfastngsqisfmwipshsnialndKADQLAKNSINSKLLDFYIQDDLKNHLRKNIVKLYNDQwtniqnnklrtikdNTTLWKTSLRKIRNEEILLTRLRIghtrithsylftktphpictcgfpltvkhIFECNKYKKFREKLSLPSIEIALSDNENMAEKTIKYMKMINLYSKV
Flexible Loop (DISEMBL)
MAYTQPILDYGCSIFMNANKKYLSHLDTIHHMGIRLISRALKSSPVNSLYAesailplsvRRRLLFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKLLDFYIQDDLKNHLRKNIVKLyndqwtniqnnklrtikdnttlWKTSLRKIRNEEILLTRLRIGHTRITHSYLFTKTPHPICTCGFPLTVKHIFECNKYKKfreklslpsieialsdnenmAEKTIKYMKMINLYSKV
Low Complexity Region (SEG)
MAYTQPILDYGCSIFMNANKKYLSHLDTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKLLDFYIQDDLKNHLRKNIVKLYNDQWTNIQNNKLRTIKDNTTLWKTSLRKIRNEEILLTRLRIGHTRITHSYLFTKTPHPICTCGFPLTVKHIFECNKYKKFREKLSLPSIEIALSDNENMAEKTIKYMKMINLYSKV
Disordered region (IsUnstruct)
****QPILDYGCSIFMNANKKYLSHLDTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKLLDFYIQDDLKNHLRKNIVKLYNDQWTNIQNNKLRTIKDNTTLWKTSLRKIRNEEILLTRLRIGHTRITHSYLFTKTPHPICTCGFPLTVKHIFECNKYKKFREKLSLPSIEIALSD***MAEKTIKYMKMINL****
Disordered Region (DISOPRED)
MAYTQPILDYGCSIFMNANKKYLSHLDTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKLLDFYIQDDLKNHLRKNIVKLYNDQWTNIQNNKLRTIKDNTTLWKTSLRKIRNEEILLTRLRIGHTRITHSYLFTKTPHPICTCGFPLTVKHIFECNKYKKFREKLSLPSIEIALSDNENMAEKTIKYMKMINLYSKV
Disordered Region (DISEMBL)
MAYTQPILDYGCSIFMNANKKYLSHLDTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKLLDFYIQDDLKNHLRKNIVKLYNDQWTNIQNNKLRTIKDNTTLWKTSLRKIRNEEILLTRLRIGHTRITHSYLFTKTPHPICTCGFPLTVKHIFECNKYKKFREKLSLPSIEIALSDNENMAEKTIKYMKMINLYSKV
Disordered Region (DISPRO)
**YTQPILDYGCSIFMNANKKYLSHLDTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKLLDFYIQDDLKNHLRKNIVKLYNDQWTNIQNNKLRTIKDNTTLWKTSLRKIRNEEILLTRLRIGHTRITHSYLFTKTPHPICTCGFPLTVKHIFECNKYKKFREKLSLPSIEIALSDNENMAEKTIKYMKMINLYSKV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAYTQPILDYGCSIFMNANKKYLSHLDTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKLLDFYIQDDLKNHLRKNIVKLYNDQWTNIQNNKLRTIKDNTTLWKTSLRKIRNEEILLTRLRIGHTRITHSYLFTKTPHPICTCGFPLTVKHIFECNKYKKFREKLSLPSIEIALSDNENMAEKTIKYMKMINLYSKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
328720146	164	PREDICTED: hypothetical protein LOC10056	0.549	0.841	0.427	1e-19
443730613	233	hypothetical protein CAPTEDRAFT_206814 [	0.629	0.678	0.335	7e-16
443721618	471	hypothetical protein CAPTEDRAFT_200496,	0.525	0.280	0.375	9e-16
443733872	400	hypothetical protein CAPTEDRAFT_197082 [	0.569	0.357	0.355	1e-15
328696858	206	PREDICTED: hypothetical protein LOC10056	0.617	0.752	0.371	2e-15
443693558	502	hypothetical protein CAPTEDRAFT_189741,	0.525	0.262	0.355	4e-15
427791321	1210	Putative tick transposon, partial [Rhipi	0.490	0.101	0.368	8e-15
427791807	1212	Putative tick transposon, partial [Rhipi	0.482	0.099	0.373	8e-15
443695973	261	hypothetical protein CAPTEDRAFT_23017, p	0.501	0.482	0.351	3e-14
443712830	397	hypothetical protein CAPTEDRAFT_202466 [	0.657	0.415	0.315	6e-14

>gi|328720146|ref|XP_003246964.1| PREDICTED: hypothetical protein LOC100568990, partial [Acyrthosiphon pisum]

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/145 (42%), Positives = 82/145 (56%), Gaps = 7/145 (4%)

Query: 82  GSQISFMWIPSHSNIALNDKAD---QLAKNSINSKLLDFYIQDDLKNHLRKNIVKLYNDQ 138
           G  I +MW P H  I  N+KAD     A +S ++ LL+ Y  +D K  +++ + + +  Q
Sbjct: 2   GMDICYMWAPGHCGIQGNEKADLEASKAASSPDTPLLNIYTYEDKKKQIKQVLDQKWLIQ 61

Query: 139 WTNIQNNKLRTIKDNTTLWKTSLRKIRNEEILLTRLRIGHTRITHSYLFTKTPHPICT-C 197
           W N Q+ KL  IK+N   WK      R EE +L RLRIGHT ITH +L  K   PIC  C
Sbjct: 62  WIN-QHTKLNQIKNNIQTWKNPGLN-RKEETILNRLRIGHTFITHRHLMEKNDPPICEMC 119

Query: 198 GFPLTVKHIF-ECNKYKKFREKLSL 221
           G  LTVKHI  EC KY   R+K ++
Sbjct: 120 GVDLTVKHIITECRKYDDMRKKYNI 144

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443730613|gb|ELU16038.1| hypothetical protein CAPTEDRAFT_206814 [Capitella teleta]

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 82/167 (49%), Gaps = 9/167 (5%)

Query: 58  LSVRRRLLFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKLLDF 117
           L++   L      A Q+Y      G  +  +W PSH  +  N++AD LAK +++    D 
Sbjct: 54  LAIYEVLTLLECAAPQKYTILYNRGFDLVILWCPSHIGVVGNERADLLAKEALSFTACDV 113

Query: 118 YIQDDLKNHLRKNIVKLYNDQWTNI----QNNKLRTIKDNTTLWKTSLRKIRNEEILLTR 173
            I     N +  +    Y D+W  +    QNNKL +++        S R+ R +EI+L R
Sbjct: 114 RIPAFDFNSVAYS---FYRDKWQALWSLEQNNKLHSVQPIIKKLTNSSREDRRKEIVLAR 170

Query: 174 LRIGHTRITHSYLFTKTPHPICT-CGFPLTVKHIF-ECNKYKKFREK 218
            RIGHT +TH YL  +   P C  C  PLTVKHI  EC  +   R++
Sbjct: 171 ARIGHTHLTHGYLLRRELPPFCVHCQCPLTVKHILIECVDFYLHRQR 217

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|443721618|gb|ELU10867.1| hypothetical protein CAPTEDRAFT_200496, partial [Capitella teleta]

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 71/136 (52%), Gaps = 4/136 (2%)

Query: 85  ISFMWIPSHSNIALNDKADQLAKNSINSK-LLDFYI-QDDLKNHLRKNIVKLYNDQWTNI 142
           + FMW PSH  I  N+ AD LAK +++S  L +  +   DL+  ++K I   +  +W   
Sbjct: 119 VVFMWCPSHVGIPGNEMADTLAKEALSSTNLAELPVPASDLRCLIKKYIRSRWQHEWDEQ 178

Query: 143 QNNKLRTIKDNTTLWKTSLRKIRNEEILLTRLRIGHTRITHSYLFTKTPHPIC-TCGFPL 201
            +NKL +I      W    R+ R EEI+L R+RIGHT  TH Y+        C  C  PL
Sbjct: 179 HSNKLHSIHPTIGPWPPCQREKRREEIVLARIRIGHTHYTHDYIPRGDDQTECVACVCPL 238

Query: 202 TVKH-IFECNKYKKFR 216
           TV+H I EC  +   R
Sbjct: 239 TVQHIIIECADFLHIR 254

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|443733872|gb|ELU18078.1| hypothetical protein CAPTEDRAFT_197082 [Capitella teleta]

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 9/152 (5%)

Query: 82  GSQISFMWIPSHSNIALNDKADQLAKNSINSKLLDFYI-QDDLKNHLRKNIVKLYNDQWT 140
           G  +   W PSH  +  N++AD LAK +++       I   D K    +   + + +QW+
Sbjct: 98  GIDLVMTWCPSHVGVMGNERADLLAKEALSFTTCTIRIPSSDFKPITHEFYKEKWQEQWS 157

Query: 141 NIQNNKLRTIKDNTTLWKTSLRKIRNEEILLTRLRIGHTRITHSYLFTKTPHPIC-TCGF 199
           + Q NKL  I+     W  S R+IR EEI+L R RIGH+ +TH YL  +   P+C  C  
Sbjct: 158 SEQENKLYCIQPTLGKWAKSSREIRREEIVLARARIGHSHLTHGYLLRREMPPVCIPCQN 217

Query: 200 PLTVKHIF-ECNKYKKFREKLSLPSIEIALSD 230
            L++KHIF EC  +     +L      IALS+
Sbjct: 218 ILSIKHIFIECVDFDILLRRL------IALSN 243

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|328696858|ref|XP_003240151.1| PREDICTED: hypothetical protein LOC100568880 [Acyrthosiphon pisum]

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 89/164 (54%), Gaps = 9/164 (5%)

Query: 92  SHSNIALNDKADQLAKNSINSKLLD----FYIQDDLKNHLRKNIVKLYNDQWTNIQNNKL 147
           SHSNI  N+K D L K + NS  L+    +   +D    +   I + ++ +W   +  KL
Sbjct: 40  SHSNIEGNEKVDCLPKEAANSTNLEISEKYCTYEDTLRCINTAIEEKWSLKWRR-KETKL 98

Query: 148 RTIKDNTTLWKTSLRKIRNEEILLTRLRIGHTRIT-HSYLFTKTPHPIC-TCGFPLTVKH 205
             IK  T  WK      R EE++LTRLRIGHTR T H YL ++   P C TCG  LT+KH
Sbjct: 99  SEIKRTTDRWKNKSNLNRKEEVILTRLRIGHTRYTLHGYLMSREDQPTCATCGVHLTIKH 158

Query: 206 IF-ECNKYKKFREKLSLPS-IEIALSDNENMAEKTIKYMKMINL 247
           I  EC + +  R K S+P  +  +L  NE+  ++T+  +K + +
Sbjct: 159 ILVECRQTEAARTKYSIPEFLYQSLGPNESAIKQTLNLIKELEI 202

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443693558|gb|ELT94903.1| hypothetical protein CAPTEDRAFT_189741, partial [Capitella teleta]

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 3/135 (2%)

Query: 82  GSQISFMWIPSHSNIALNDKADQLAKNSINSKLLDFYI-QDDLKNHLRKNIVKLYNDQWT 140
           G  + F+W PSH  I  N+ AD+LAK ++   +    +   D K+ +R  +  L+ ++W 
Sbjct: 177 GKLVVFIWCPSHVGILGNEVADRLAKQALVMPVTKLPLPHTDYKSPIRSYVKSLWQNEWD 236

Query: 141 NIQNNKLRTIKDNTTLWKTSLRKIRNEEILLTRLRIGHTRITHSYLFTKTPHPIC-TCGF 199
              +NKL +I+   + WK   +  R  EI+L R RIGH+ +TH YL  +   P C  C  
Sbjct: 237 EETDNKLHSIQPVISEWKQGPQIDRRGEIVLARARIGHSHLTHGYLLRREVAPFCIPCQS 296

Query: 200 PLTVKHIF-ECNKYK 213
            LTVKHI  +C  +K
Sbjct: 297 LLTVKHILIDCIDFK 311

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|427791321|gb|JAA61112.1| Putative tick transposon, partial [Rhipicephalus pulchellus]

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 2/125 (1%)

Query: 85   ISFMWIPSHSNIALNDKADQLAKNSINSKLLDFYIQ-DDLKNHLRKNIVKLYNDQWTNIQ 143
            + F W+PSH  I  N+KAD+ A  + +  L    I   D +  +R  ++  +  QW +  
Sbjct: 1033 MRFCWVPSHVGIPGNEKADKCASLAAHKTLTKIRIPLKDSQRTIRLALLAKWQQQWDSCT 1092

Query: 144  NNKLRTIKDNTTLWKTSLRKIRNEEILLTRLRIGHTRITHSYLFTKTPHPICT-CGFPLT 202
            +NKL  +K     WK    + R  E++L RLRIGHT +TH++L TK   P+C  C  PLT
Sbjct: 1093 SNKLHLVKPTLGEWKNCRHQERFIEVILCRLRIGHTHLTHNFLLTKEEQPMCEKCQEPLT 1152

Query: 203  VKHIF 207
            + HI 
Sbjct: 1153 LIHIL 1157

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427791807|gb|JAA61355.1| Putative tick transposon, partial [Rhipicephalus pulchellus]

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 2/123 (1%)

Query: 87   FMWIPSHSNIALNDKADQLAKNSINSKLLDFYIQ-DDLKNHLRKNIVKLYNDQWTNIQNN 145
            F W+PSH  I  N+KAD+ A  + +  L    I   D +  +R  ++  +  QW +  +N
Sbjct: 1038 FCWVPSHVGIPGNEKADKCASLAAHKTLTKIRIPLKDSQRTIRLALLAKWQQQWDSCTSN 1097

Query: 146  KLRTIKDNTTLWKTSLRKIRNEEILLTRLRIGHTRITHSYLFTKTPHPICT-CGFPLTVK 204
            KL  +K     WK    + R  E++L RLRIGHT +TH++L TK   P+C  C  PLT+ 
Sbjct: 1098 KLHLVKPTLGEWKNCRHQERFIEVILCRLRIGHTHLTHNFLLTKEEQPMCEKCQEPLTLI 1157

Query: 205  HIF 207
            HI 
Sbjct: 1158 HIL 1160

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443695973|gb|ELT96755.1| hypothetical protein CAPTEDRAFT_23017, partial [Capitella teleta]

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 2/128 (1%)

Query: 82  GSQISFMWIPSHSNIALNDKADQLAKNSINSKLLDFYI-QDDLKNHLRKNIVKLYNDQWT 140
           G  + F+W PSH  I  N+ AD+LAK ++   +    +   D K+ +R  +  L+ ++W 
Sbjct: 131 GKLVVFIWCPSHVGILGNEVADRLAKQALVMPVTKLPLPHTDYKSPIRSYVKSLWQNEWD 190

Query: 141 NIQNNKLRTIKDNTTLWKTSLRKIRNEEILLTRLRIGHTRITHSYLFTKTPHPIC-TCGF 199
              +NKL +I+   + WK   +  R  EI+L R RIGH+ +TH YL  +   P C  C  
Sbjct: 191 EETDNKLHSIQPVISEWKQGPQIDRRGEIVLARARIGHSHLTHGYLLRREVAPFCIPCQS 250

Query: 200 PLTVKHIF 207
            L+VKHI 
Sbjct: 251 LLSVKHIL 258

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|443712830|gb|ELU05953.1| hypothetical protein CAPTEDRAFT_202466 [Capitella teleta]

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 6/171 (3%)

Query: 82  GSQISFMWIPSHSNIALNDKADQLAKNSINSKLLDFYI-QDDLKNHLRKNIVKLYNDQWT 140
           G ++ F+W PSH  I  N+ AD+ AK ++   +    +   D K+ +R  +  L+ ++W 
Sbjct: 226 GKKVVFIWCPSHVGILGNEVADRQAKQALVMPVTKLPLPHTDYKSPIRSYVKSLWQNEWD 285

Query: 141 NIQNNKLRTIKDNTTLWKTSLRKIRNEEILLTRLRIGHTRITHSYLFTKTPHPIC-TCGF 199
              +NKL  I+   + WK   +  R  EI+L   RIGH+ +TH YL  +   P C  C  
Sbjct: 286 GETDNKLHIIQPVISEWKQGPQIDRRGEIVLACARIGHSHLTHGYLLRREVAPFCIPCQS 345

Query: 200 PLTVKHIF-ECNKYKKFREK-LSLPSIEIALSDNENMAEKTIKYMKMINLY 248
            LTVKHI  +C  ++  R K  ++ S+     D      K + Y+K I L+
Sbjct: 346 LLTVKHILIDCIDFEISRRKYFNVFSMRQLFEDTH--PSKILLYLKEIGLF 394

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	251
cd09276	128	cd09276, Rnase_HI_RT_non_LTR, non-LTR RNase HI dom	3e-09
pfam00075	126	pfam00075, RNase_H, RNase H	8e-08
cd09277	133	cd09277, RNase_HI_bacteria_HBD, Bacterial RNase HI	7e-05
cd09280	150	cd09280, RNase_HI_eukaryote_like, Eukaryotic RNase	0.003

>gnl|CDD|187700 cd09276, Rnase_HI_RT_non_LTR, non-LTR RNase HI domain of reverse transcriptases

 Score = 53.4 bits (129), Expect = 3e-09
 Identities = 15/55 (27%), Positives = 28/55 (50%)

Query: 53  SAILPLSVRRRLLFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAK 107
           +A+  L   R      +  ++     + +G ++   W+P HS I  N++AD+LAK
Sbjct: 70  AALKALRSPRSSSPLVLRIRKAIRELANHGVKVRLHWVPGHSGIEGNERADRLAK 124

Ribonuclease H (RNase H) is classified into two families, type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type 2 (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). Ribonuclease HI (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes. RNase HI has also been observed as an adjunct domain to the reverse transcriptase gene in retroviruses, long-term repeat (LTR)-bearing retrotransposons and non-LTR retrotransposons. RNase HI in LTR retrotransposons perform degradation of the original RNA template, generation of a polypurine tract (the primer for plus-strand DNA synthesis), and final removal of RNA primers from newly synthesized minus and plus strands. The catalytic residues for RNase H enzymatic activity, three aspartatic acids and one glutamatic acid residue (DEDD), are unvaried across all RNase H domains. The position of the RNase domain of non-LTR and LTR transposons is at the carboxyl terminal of the reverse transcriptase (RT) domain and their RNase domains group together, indicating a common evolutionary origin. Many non-LTR transposons have lost the RNase domain because their activity is at the nucleus and cellular RNase may suffice; however LTR retotransposons always encode their own RNase domain because it requires RNase activity in RNA-protein particles in the cytoplasm. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription. Length = 128

>gnl|CDD|215695 pfam00075, RNase_H, RNase H

 Score = 49.6 bits (119), Expect = 8e-08
 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 7/80 (8%)

Query: 32  MGIRLISRALKSSPVN----SLYAESAILPLSVRRRLLFSNIIAKQEYYFASTNGSQISF 87
           + +     AL    VN    S Y    I            +   K E +       ++  
Sbjct: 46  LALIEALEALSGQKVNIYTDSQYVIGGIT---NGWPTKSESKPIKNEIWELLQKKHKVYI 102

Query: 88  MWIPSHSNIALNDKADQLAK 107
            W+P HS I  N+ AD+LAK
Sbjct: 103 QWVPGHSGIPGNELADKLAK 122

RNase H digests the RNA strand of an RNA/DNA hybrid. Important enzyme in retroviral replication cycle, and often found as a domain associated with reverse transcriptases. Structure is a mixed alpha+beta fold with three a/b/a layers. Length = 126

>gnl|CDD|187701 cd09277, RNase_HI_bacteria_HBD, Bacterial RNase HI containing a hybrid binding domain (HBD) at the N-terminus

 Score = 41.3 bits (98), Expect = 7e-05
 Identities = 11/27 (40%), Positives = 19/27 (70%)

Query: 84  QISFMWIPSHSNIALNDKADQLAKNSI 110
           +ISF+ + +HS    N+ AD+LAK ++
Sbjct: 107 KISFVKVKAHSGDKYNELADKLAKKAL 133

Ribonuclease H (RNase H) enzymes are divided into two major families, Type 1 and Type 2, based on amino acid sequence similarities and biochemical properties. RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner in the presence of divalent cations. RNase H is involved in DNA replication, repair and transcription. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes and most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite the lack of amino acid sequence homology, Type 1 and type 2 RNase H share a main-chain fold and steric configurations of the four acidic active-site (DEDD) residues and have the same catalytic mechanism and functions in cells. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. Prokaryotic RNase H varies greatly in domain structures and substrate specificities. Prokaryotes and some single-cell eukaryotes do not require RNase H for viability. Some bacteria distinguished from other bacterial RNase HI in the presence of a hybrid binding domain (HBD) at the N-terminus which is commonly present at the N-termini of eukaryotic RNase HI. It has been reported that this domain is required for dimerization and processivity of RNase HI upon binding to RNA-DNA hybrids. Length = 133

>gnl|CDD|187704 cd09280, RNase_HI_eukaryote_like, Eukaryotic RNase H is longer and more complex than their prokaryotic counterparts and unlike prokaryote, RNase H are essential in higher eukaryote

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 82  GSQISFMWIPSHSNIALNDKADQLAK 107
           G ++ F  +P HS I  N++AD+LAK
Sbjct: 121 GIRVKFWHVPGHSGIYGNEEADRLAK 146

Ribonuclease H (RNase H) is classified into two families, type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type 2 (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. RNase H is involved in DNA replication, repair and transcription. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H is widely present in various organisms, including bacteria, archaea and eukaryote and most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite the lack of amino acid sequence homology, Type 1 and type 2 RNase H share a main-chain fold and steric configurations of the four acidic active-site (DEDD) residues and have the same catalytic mechanism and functions in cells. Eukaryotic RNase H is longer and more complex than in prokaryotes. Almost all eukaryotic RNase HI have highly conserved regions at the N-terminal called hybrid binding domain (HBD). It is speculated that the HBD contributes to binding the RNA/DNA hybrid. Prokaryotes and some single-cell eukaryotes do not require RNase H for viability, but RNase H is essential in higher eukaryotes. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. Length = 150

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
PRK06548	161	ribonuclease H; Provisional	99.12
PRK08719	147	ribonuclease H; Reviewed	99.11
PRK00203	150	rnhA ribonuclease H; Reviewed	99.07
COG0328	154	RnhA Ribonuclease HI [DNA replication, recombinati	99.06
PF00075	132	RNase_H: RNase H; InterPro: IPR002156 The RNase H	99.01
KOG3752|consensus	371		98.21
cd06222	130	RnaseH RNase H (RNase HI) is an endonuclease that	98.0
PF13966	86	zf-RVT: zinc-binding in reverse transcriptase	96.61
PRK13907	128	rnhA ribonuclease H; Provisional	95.53
PRK07708	219	hypothetical protein; Validated	91.06
PF13456	87	RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EH	89.46
PRK07238	372	bifunctional RNase H/acid phosphatase; Provisional	89.2

>PRK06548 ribonuclease H; Provisional

Probab=99.12  E-value=1.2e-10  Score=93.88  Aligned_cols=84  Identities=20%  Similarity=0.194  Sum_probs=61.6

Q ss_pred             hhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhhh----------------HHH----HHHhhCCCceE
Q psy12035         27 DTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAK----------------QEY----YFASTNGSQIS   86 (251)
Q Consensus        27 ~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~k----------------~~~----~~~~~~~~~i~   86 (251)
                      .+-+++|+.|++.|++..+.....+  -|.+||.++.+.+.+++.+                +++    ..+. ....|+
T Consensus        40 ~TNnraEl~Aii~aL~~~~~~~~~v--~I~TDS~yvi~~i~~W~~~Wk~~gWk~s~G~pV~N~dL~~~l~~l~-~~~~v~  116 (161)
T PRK06548         40 ATNNIAELTAVRELLIATRHTDRPI--LILSDSKYVINSLTKWVYSWKMRKWRKADGKPVLNQEIIQEIDSLM-ENRNIR  116 (161)
T ss_pred             CCHHHHHHHHHHHHHHhhhcCCceE--EEEeChHHHHHHHHHHHHHHHHCCCcccCCCccccHHHHHHHHHHH-hcCceE
Confidence            4459999999999998765443333  4889999988877654431                111    1112 235799


Q ss_pred             EEeeccCCCCccchHHhHHHhhhhcCC
Q psy12035         87 FMWIPSHSNIALNDKADQLAKNSINSK  113 (251)
Q Consensus        87 ~~WvPgH~gI~GNE~AD~lAk~a~~~~  113 (251)
                      |.|||||+|.+|||.||+||++|+...
T Consensus       117 ~~wVkgHsg~~gNe~aD~LA~~aa~~~  143 (161)
T PRK06548        117 MSWVNAHTGHPLNEAADSLARQAANNF  143 (161)
T ss_pred             EEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999987543

>PRK08719 ribonuclease H; Reviewed

Probab=99.11  E-value=2.3e-10  Score=91.16  Aligned_cols=79  Identities=16%  Similarity=0.107  Sum_probs=59.7

Q ss_pred             hhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhhh----------------HHH----HHHhhCCCceE
Q psy12035         27 DTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAK----------------QEY----YFASTNGSQIS   86 (251)
Q Consensus        27 ~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~k----------------~~~----~~~~~~~~~i~   86 (251)
                      .+-+++|+.|++.||+......     -|.+|+.++.+.+.+++.+                .++    ..+. ....|+
T Consensus        48 ~Tnn~aEl~A~~~aL~~~~~~~-----~i~tDS~yvi~~i~~~~~~W~~~~w~~s~g~~v~n~dl~~~i~~l~-~~~~i~  121 (147)
T PRK08719         48 TDNAELELLALIEALEYARDGD-----VIYSDSDYCVRGFNEWLDTWKQKGWRKSDKKPVANRDLWQQVDELR-ARKYVE  121 (147)
T ss_pred             ccHHHHHHHHHHHHHHHcCCCC-----EEEechHHHHHHHHHHHHHHHhCCcccCCCcccccHHHHHHHHHHh-CCCcEE
Confidence            4669999999999999876542     4889998888766443321                111    1122 356799


Q ss_pred             EEeeccCCCCccchHHhHHHhhhhc
Q psy12035         87 FMWIPSHSNIALNDKADQLAKNSIN  111 (251)
Q Consensus        87 ~~WvPgH~gI~GNE~AD~lAk~a~~  111 (251)
                      |.|||||+|++|||.||++|++|+.
T Consensus       122 ~~~VkgH~g~~~Ne~aD~lA~~a~~  146 (147)
T PRK08719        122 VEKVTAHSGIEGNEAADMLAQAAAE  146 (147)
T ss_pred             EEEecCCCCChhHHHHHHHHHHHhh
Confidence            9999999999999999999999864

>PRK00203 rnhA ribonuclease H; Reviewed

Probab=99.07  E-value=2.9e-10  Score=90.87  Aligned_cols=83  Identities=19%  Similarity=0.227  Sum_probs=59.4

Q ss_pred             hhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhhh----------------HHH-HHH--hhCCCceEEE
Q psy12035         28 TIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAK----------------QEY-YFA--STNGSQISFM   88 (251)
Q Consensus        28 ~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~k----------------~~~-~~~--~~~~~~i~~~   88 (251)
                      +-+++|+++++.||+..+...   ..-|.+|+.++...+..+..+                +++ ..+  ......|.|.
T Consensus        42 TN~~aEL~Ai~~AL~~~~~~~---~v~I~tDS~yvi~~i~~w~~~Wk~~~~~~~~g~~v~n~dl~~~i~~l~~~~~v~~~  118 (150)
T PRK00203         42 TNNRMELMAAIEALEALKEPC---EVTLYTDSQYVRQGITEWIHGWKKNGWKTADKKPVKNVDLWQRLDAALKRHQIKWH  118 (150)
T ss_pred             cHHHHHHHHHHHHHHHcCCCC---eEEEEECHHHHHHHHHHHHHHHHHcCCcccCCCccccHHHHHHHHHHhccCceEEE
Confidence            448999999999999776532   234889998776555442220                111 011  1234789999


Q ss_pred             eeccCCCCccchHHhHHHhhhhcCC
Q psy12035         89 WIPSHSNIALNDKADQLAKNSINSK  113 (251)
Q Consensus        89 WvPgH~gI~GNE~AD~lAk~a~~~~  113 (251)
                      |||||+|++|||.||++||+|+..+
T Consensus       119 wV~~H~~~~~N~~AD~lA~~a~~~~  143 (150)
T PRK00203        119 WVKGHAGHPENERCDELARAGAEEA  143 (150)
T ss_pred             EecCCCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999987654

>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]

Probab=99.06  E-value=1.7e-10  Score=91.84  Aligned_cols=104  Identities=19%  Similarity=0.196  Sum_probs=72.5

Q ss_pred             chhchhccccchhhh--hhhhhh-hHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhhh-----------H-
Q psy12035          9 DYGCSIFMNANKKYL--SHLDTI-HHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAK-----------Q-   73 (251)
Q Consensus         9 ~Yga~iw~~~~~~~~--~~l~~~-~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~k-----------~-   73 (251)
                      .||+.+++...+...  ....++ +++|+++++.||+.... .-....-+.+||.++.+.+..++.+           + 
T Consensus        20 G~g~vl~~~~~~~~~s~~~~~tTNNraEl~A~i~AL~~l~~-~~~~~v~l~tDS~yv~~~i~~w~~~w~~~~w~~~~~~p   98 (154)
T COG0328          20 GWGAVLRYGDGEKELSGGEGRTTNNRAELRALIEALEALKE-LGACEVTLYTDSKYVVEGITRWIVKWKKNGWKTADKKP   98 (154)
T ss_pred             eEEEEEEcCCceEEEeeeeecccChHHHHHHHHHHHHHHHh-cCCceEEEEecHHHHHHHHHHHHhhccccCccccccCc
Confidence            478888865543311  122333 99999999999987663 1112234889999998888766542           1 


Q ss_pred             --------HHHHHhhCCCceEEEeeccCCCCccchHHhHHHhhhhcCC
Q psy12035         74 --------EYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSK  113 (251)
Q Consensus        74 --------~~~~~~~~~~~i~~~WvPgH~gI~GNE~AD~lAk~a~~~~  113 (251)
                              ++..+..+-..|.+.|||||.|.++||.||+||+.|+...
T Consensus        99 vkn~dl~~~~~~~~~~~~~v~~~WVkgH~g~~~NeraD~LA~~~~~~~  146 (154)
T COG0328          99 VKNKDLWEELDELLKRHELVFWEWVKGHAGHPENERADQLAREAARAA  146 (154)
T ss_pred             cccHHHHHHHHHHHhhCCeEEEEEeeCCCCChHHHHHHHHHHHHHHhh
Confidence                    1122234445899999999999999999999999987664

>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site

Probab=99.01  E-value=5.2e-10  Score=86.73  Aligned_cols=81  Identities=23%  Similarity=0.333  Sum_probs=58.7

Q ss_pred             hhhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhhh-------------HHHHHHhhCCCceEEEeecc
Q psy12035         26 LDTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAK-------------QEYYFASTNGSQISFMWIPS   92 (251)
Q Consensus        26 l~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~k-------------~~~~~~~~~~~~i~~~WvPg   92 (251)
                      ..+.+++|+.++..|++.. ..   ....|.+|+..+...+.++..+             .++.....++..|.|.||||
T Consensus        37 ~~s~~~aEl~Ai~~AL~~~-~~---~~v~I~tDS~~v~~~l~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~v~~~~V~~  112 (132)
T PF00075_consen   37 GQSNNRAELQAIIEALKAL-EH---RKVTIYTDSQYVLNALNKWLHGNGWKKTSNGRPIKNEIWELLSRGIKVRFRWVPG  112 (132)
T ss_dssp             SECHHHHHHHHHHHHHHTH-ST---SEEEEEES-HHHHHHHHTHHHHTTSBSCTSSSBHTHHHHHHHHHSSEEEEEESSS
T ss_pred             ccchhhhheehHHHHHHHh-hc---ccccccccHHHHHHHHHHhccccccccccccccchhheeeccccceEEeeeeccC
Confidence            6777999999999999954 22   2234889998877654442211             11222225588999999999


Q ss_pred             CCCC-ccchHHhHHHhhhh
Q psy12035         93 HSNI-ALNDKADQLAKNSI  110 (251)
Q Consensus        93 H~gI-~GNE~AD~lAk~a~  110 (251)
                      |+|+ .|||.||++||+|+
T Consensus       113 H~~~~~~N~~aD~lAk~a~  131 (132)
T PF00075_consen  113 HSGVPQGNERADRLAKEAA  131 (132)
T ss_dssp             SSSSHHHHHHHHHHHHHHH
T ss_pred             cCCCchhHHHHHHHHHHhc
Confidence            9999 69999999999986

This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....

>KOG3752|consensus

Probab=98.21  E-value=2.3e-06  Score=76.39  Aligned_cols=103  Identities=18%  Similarity=0.134  Sum_probs=68.5

Q ss_pred             cccchhchhccccchhh----hh-hhhhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhhh--------
Q psy12035          6 PILDYGCSIFMNANKKY----LS-HLDTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAK--------   72 (251)
Q Consensus         6 s~~~Yga~iw~~~~~~~----~~-~l~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~k--------   72 (251)
                      |+..||. -|+++....    +. -..+-+|++|.||..|++.+...-+. -.-|.+|+..+......++..        
T Consensus       229 ~~AGyGv-ywg~~~e~N~s~pv~~g~qtNnrAEl~Av~~ALkka~~~~~~-kv~I~TDS~~~i~~l~~wv~~~k~~~~k~  306 (371)
T KOG3752|consen  229 SRAGYGV-YWGPGHELNVSGPLAGGRQTNNRAELIAAIEALKKARSKNIN-KVVIRTDSEYFINSLTLWVQGWKKNGWKT  306 (371)
T ss_pred             CcceeEE-eeCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhcCCC-cEEEEechHHHHHHHHHHHhhhccCcccc
Confidence            4556664 355554322    22 34455999999999999876443332 124788888877655444431        


Q ss_pred             -------------H----HHHHH-hh-CCCceEEEeeccCCCCccchHHhHHHhhhh
Q psy12035         73 -------------Q----EYYFA-ST-NGSQISFMWIPSHSNIALNDKADQLAKNSI  110 (251)
Q Consensus        73 -------------~----~~~~~-~~-~~~~i~~~WvPgH~gI~GNE~AD~lAk~a~  110 (251)
                                   +    ++..+ +. ++..|++.|||||.||.|||+||.+|++++
T Consensus       307 ~~~~~~i~~~v~n~~~~~e~~~l~q~~~~~~vq~~~V~Gh~gi~gne~Ad~lARkgs  363 (371)
T KOG3752|consen  307 SNGSDRICAYVKNQDFFNELDELEQEISNKKVQQEYVGGHSGILGNEMADALARKGS  363 (371)
T ss_pred             ccCCCccceeeecchHHHHHHHHHhhhccCceEEEEecCcCCcchHHHHHHHHhhhh
Confidence                         0    01122 22 568999999999999999999999999874

>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner

Probab=98.00  E-value=1.4e-05  Score=59.85  Aligned_cols=102  Identities=18%  Similarity=0.107  Sum_probs=61.3

Q ss_pred             ccchhchhccccchhh---hh--hhhhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhh-----hH---
Q psy12035          7 ILDYGCSIFMNANKKY---LS--HLDTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIA-----KQ---   73 (251)
Q Consensus         7 ~~~Yga~iw~~~~~~~---~~--~l~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~-----k~---   73 (251)
                      ...||..++.......   ..  .-.+.+.+|+.++..|++..-.... ...-|..|+..+...+.+...     ..   
T Consensus        14 ~~g~g~v~~~~~~~~~~~~~~~~~~~s~~~aEl~al~~al~~~~~~~~-~~i~i~~Ds~~~~~~~~~~~~~~~~~~~~~~   92 (130)
T cd06222          14 PAGAGVVLRDPGGEVLLSGGLLGGNTTNNRAELLALIEALELALELGG-KKVNIYTDSQYVINALTGWYEGKPVKNVDLW   92 (130)
T ss_pred             ceEEEEEEEeCCCeEEEeccccCCCCcHHHHHHHHHHHHHHHHHhCCC-ceEEEEECHHHHHHHhhccccCCChhhHHHH
Confidence            3456666665432111   11  3456689999999999977421111 111256666655544432110     00   


Q ss_pred             -HHHHHhhCCCceEEEeeccCCCCccchHHhHHHhhh
Q psy12035         74 -EYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNS  109 (251)
Q Consensus        74 -~~~~~~~~~~~i~~~WvPgH~gI~GNE~AD~lAk~a  109 (251)
                       .+.........+++.|||+|+|+.+|+.||.+||+|
T Consensus        93 ~~i~~~~~~~~~~~i~~v~~h~~~~~n~~ad~la~~~  129 (130)
T cd06222          93 QRLLALLKRFHKVRFEWVPGHSGIEGNERADALAKEA  129 (130)
T ss_pred             HHHHHHHhCCCeEEEEEcCCCCCCcchHHHHHHHHhh
Confidence             011112367889999999999999999999999986

One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.

>PF13966 zf-RVT: zinc-binding in reverse transcriptase

Probab=96.61  E-value=0.0011  Score=47.59  Aligned_cols=31  Identities=29%  Similarity=0.556  Sum_probs=26.3

Q ss_pred             cccccCCCCCCCc-cCCC-Ccccceec-cccCch
Q psy12035        183 HSYLFTKTPHPIC-TCGF-PLTVKHIF-ECNKYK  213 (251)
Q Consensus       183 ~l~~~~~~~~~~C-~Cg~-~et~~Hil-~Cp~~~  213 (251)
                      .+++.+...++.| .||. .||++|+| +||...
T Consensus        50 ~l~~r~~~~~~~C~~C~~~~Et~~Hlf~~C~~a~   83 (86)
T PF13966_consen   50 NLQRRGIQVDPICPLCGNEEETIEHLFFHCPFAR   83 (86)
T ss_pred             hhhccCCccCCccccCCCccccccceeccCcCcc
Confidence            4667777889999 9995 99999999 999764

>PRK13907 rnhA ribonuclease H; Provisional

Probab=95.53  E-value=0.027  Score=43.24  Aligned_cols=79  Identities=23%  Similarity=0.161  Sum_probs=50.9

Q ss_pred             hhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhhhH--------HHHHHhhCCCceEEEeeccCCCCccc
Q psy12035         28 TIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAKQ--------EYYFASTNGSQISFMWIPSHSNIALN   99 (251)
Q Consensus        28 ~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~k~--------~~~~~~~~~~~i~~~WvPgH~gI~GN   99 (251)
                      +-+.+|+.+++.|++......... .-+.+|+..+...+.+...+.        ++..+..+-..+.+.|||.+    +|
T Consensus        40 tn~~AE~~All~aL~~a~~~g~~~-v~i~sDS~~vi~~~~~~~~~~~~~~~l~~~~~~l~~~f~~~~~~~v~r~----~N  114 (128)
T PRK13907         40 SNHEAEYHALLAALKYCTEHNYNI-VSFRTDSQLVERAVEKEYAKNKMFAPLLEEALQYIKSFDLFFIKWIPSS----QN  114 (128)
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCE-EEEEechHHHHHHHhHHHhcChhHHHHHHHHHHHHhcCCceEEEEcCch----hc
Confidence            458899999999998655432211 236688877765554321111        11122334456778999995    79


Q ss_pred             hHHhHHHhhhhc
Q psy12035        100 DKADQLAKNSIN  111 (251)
Q Consensus       100 E~AD~lAk~a~~  111 (251)
                      +.||.+|+.|..
T Consensus       115 ~~Ad~LA~~a~~  126 (128)
T PRK13907        115 KVADELARKAIL  126 (128)
T ss_pred             hhHHHHHHHHHh
Confidence            999999999864

>PRK07708 hypothetical protein; Validated

Probab=91.06  E-value=0.64  Score=39.45  Aligned_cols=85  Identities=12%  Similarity=-0.004  Sum_probs=52.4

Q ss_pred             hhhhHHHHHHHHhhhccCCccchhhh-ccccchHHHHHHHHhhhh-hhH----HHH-----HHhhCCCceEEEeeccCCC
Q psy12035         27 DTIHHMGIRLISRALKSSPVNSLYAE-SAILPLSVRRRLLFSNII-AKQ----EYY-----FASTNGSQISFMWIPSHSN   95 (251)
Q Consensus        27 ~~~~r~~l~~i~~a~rt~~~~~~~~~-~~i~p~~l~~~~~~~~~~-~k~----~~~-----~~~~~~~~i~~~WvPgH~g   95 (251)
                      .+-+.++..|++.|++.......... .-|..|+..+...+.... .+.    .|.     .+..-...+.+.|||..  
T Consensus       116 ~TNN~AEy~Ali~aL~~A~e~g~~~~~V~I~~DSqlVi~qi~g~wk~~~~~l~~y~~~i~~l~~~~~l~~~~~~VpR~--  193 (219)
T PRK07708        116 YDNNEAEYAALYYAMQELEELGVKHEPVTFRGDSQVVLNQLAGEWPCYDEHLNHWLDRIEQKLKQLKLTPVYEPISRK--  193 (219)
T ss_pred             ccCcHHHHHHHHHHHHHHHHcCCCcceEEEEeccHHHHHHhCCCceeCChhHHHHHHHHHHHHhhCCceEEEEECCch--
Confidence            45588899999999987654332111 135677777665543211 111    111     11233445788999885  


Q ss_pred             CccchHHhHHHhhhhcCCCC
Q psy12035         96 IALNDKADQLAKNSINSKLL  115 (251)
Q Consensus        96 I~GNE~AD~lAk~a~~~~~~  115 (251)
                        -|+.||.||+.|.....+
T Consensus       194 --~N~~AD~LAk~Al~~~~~  211 (219)
T PRK07708        194 --QNKEADQLATQALEGTVI  211 (219)
T ss_pred             --hhhHHHHHHHHHHhcCCC
Confidence              499999999999876543

>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B

Probab=89.46  E-value=0.81  Score=31.80  Aligned_cols=75  Identities=17%  Similarity=0.008  Sum_probs=40.9

Q ss_pred             HHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhh-hhh-------HHHHHHhhCCCceEEEeeccCCCCccchHH
Q psy12035         31 HMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNI-IAK-------QEYYFASTNGSQISFMWIPSHSNIALNDKA  102 (251)
Q Consensus        31 r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~-~~k-------~~~~~~~~~~~~i~~~WvPgH~gI~GNE~A  102 (251)
                      -+|+.++..|++....-.... .-+.+|+..+...+.+. ..+       +++..+..+-..+.+.|||.    ++|..|
T Consensus         3 ~aE~~al~~al~~a~~~g~~~-i~v~sDs~~vv~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~r----~~N~~A   77 (87)
T PF13456_consen    3 EAEALALLEALQLAWELGIRK-IIVESDSQLVVDAINGRSSSRSELRPLIQDIRSLLDRFWNVSVSHIPR----EQNKVA   77 (87)
T ss_dssp             HHHHHHHHHHHHHHHCCT-SC-EEEEES-HHHHHHHTTSS---SCCHHHHHHHHHHHCCCSCEEEEE--G----GGSHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCE-EEEEecCccccccccccccccccccccchhhhhhhccccceEEEEECh----HHhHHH
Confidence            357777777776544322211 12456666555444221 000       11122344567899999998    569999


Q ss_pred             hHHHhhhh
Q psy12035        103 DQLAKNSI  110 (251)
Q Consensus       103 D~lAk~a~  110 (251)
                      |.+||.|.
T Consensus        78 ~~LA~~a~   85 (87)
T PF13456_consen   78 DALAKFAL   85 (87)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999875

>PRK07238 bifunctional RNase H/acid phosphatase; Provisional

Probab=89.20  E-value=0.55  Score=42.87  Aligned_cols=81  Identities=19%  Similarity=0.171  Sum_probs=50.8

Q ss_pred             hhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhh-hhhhH--------HHHHHhhCCCceEEEeeccCCCCcc
Q psy12035         28 TIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSN-IIAKQ--------EYYFASTNGSQISFMWIPSHSNIAL   98 (251)
Q Consensus        28 ~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~-~~~k~--------~~~~~~~~~~~i~~~WvPgH~gI~G   98 (251)
                      +-+.+|+.+++.|++......... .-+.+|+..+...+.. +..++        ++..+..+-..+++.|||.    .+
T Consensus        44 tnn~AE~~All~gL~~a~~~g~~~-v~i~~DS~lvi~~i~~~~~~~~~~l~~~~~~i~~l~~~f~~~~i~~v~r----~~  118 (372)
T PRK07238         44 TNNVAEYRGLIAGLEAAAELGATE-VEVRMDSKLVVEQMSGRWKVKHPDMKPLAAQARELASQFGRVTYTWIPR----AR  118 (372)
T ss_pred             CchHHHHHHHHHHHHHHHhCCCCe-EEEEeCcHHHHHHhCCCCccCChHHHHHHHHHHHHHhcCCceEEEECCc----hh
Confidence            337899999999998655421111 1356777766654432 11111        1112233446799999998    67


Q ss_pred             chHHhHHHhhhhcCC
Q psy12035         99 NDKADQLAKNSINSK  113 (251)
Q Consensus        99 NE~AD~lAk~a~~~~  113 (251)
                      |+.||.+|+.|....
T Consensus       119 N~~AD~LA~~a~~~~  133 (372)
T PRK07238        119 NAHADRLANEAMDAA  133 (372)
T ss_pred             hhHHHHHHHHHHHhh
Confidence            999999999986444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	251
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
2kq2_A	147	Ribonuclease H-related protein; PSI, NESG, protein	6e-05
1jl1_A	155	Ribonuclease HI; RNAse HI, protein stability, ther	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 6e-06
 Identities = 41/265 (15%), Positives = 83/265 (31%), Gaps = 75/265 (28%)

Query: 6   PILDYGCSIFMNANKKYLSHLDTIHHMGIRLISRALKSSPVNSL--------YAESAILP 57
           P      SI   + +  L+  D   H+    ++  ++SS +N L        +   ++ P
Sbjct: 327 PRR---LSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-LNVLEPAEYRKMFDRLSVFP 382

Query: 58  LSVRRRLLFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNS-------- 109
            S        +I               +S +W     +  +    ++L K S        
Sbjct: 383 PSA-------HIPTIL-----------LSLIWFDVIKSDVMVV-VNKLHKYSLVEKQPKE 423

Query: 110 ----INSKLLDFYIQDDLKNHLRKNIVKLYNDQWTNIQNNKLRTIKDNTTLWKTS--LRK 163
               I S  L+  ++ + +  L ++IV  YN   T   ++ +    D          L+ 
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 164 IRNEE--ILLTRLRIGHTRITHSYL---F--TKTPHPICTCGFPLTVKHIF-ECNKYKKF 215
           I + E   L   +          +L   F   K  H         ++ +   +   YK +
Sbjct: 484 IEHPERMTLFRMV----------FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533

Query: 216 REKLSLPSIEIALSDNENMAEKTIK 240
                       + DN+   E+ + 
Sbjct: 534 ------------ICDNDPKYERLVN 546

>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A Length = 147

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 84  QISFMWIPSHSNIALNDKADQLAKNSINSK 113
             SF  + +HS    ND  D  AK+++  +
Sbjct: 109 IYSFEKVKAHSGNEFNDYVDMKAKSALGIR 138

>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ... Length = 155

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 84  QISFMWIPSHSNIALNDKADQLAKNSINSKLLD 116
           QI + W+  H+    N++AD+LA+ +  +  L+
Sbjct: 115 QIKWEWVKGHAGHPENERADELARAAAMNPTLE 147

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
3qio_A	150	GAG-POL polyprotein; RNAse H, inhibitor, nuclease,	99.16
3h08_A	146	RNH (ribonuclease H); RNAse H, 3D-structure, endon	99.11
1jl1_A	155	Ribonuclease HI; RNAse HI, protein stability, ther	99.07
2e4l_A	158	Ribonuclease HI, RNAse HI; hydrolase, endoribonucl	99.05
2qkb_A	154	Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hy	99.03
3p1g_A	165	Xenotropic murine leukemia virus-related virus (X	98.99
1ril_A	166	Ribonuclease H; hydrolase(endoribonuclease); 2.80A	98.97
2kq2_A	147	Ribonuclease H-related protein; PSI, NESG, protein	98.85
2lsn_A	165	Reverse transcriptase; RNAse H, viral protein; NMR	98.76
1mu2_A	555	HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polym	98.73
2zd1_A	557	Reverse transcriptase/ribonuclease H; P51/P66, het	98.61
3u3g_D	140	Ribonuclease H, RNAse H1; hydrolase, cleave the RN	97.91
3hst_B	141	Protein RV2228C/MT2287; ribonuclease H1, RV2228C N	97.81
2ehg_A	149	Ribonuclease HI; RNAse HI, hyperthermophilic archa	97.6

>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A

Probab=99.16  E-value=4.9e-11  Score=94.26  Aligned_cols=81  Identities=21%  Similarity=0.282  Sum_probs=60.8

Q ss_pred             hhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhh----------------hHHH----HHHhhCCCceE
Q psy12035         27 DTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIA----------------KQEY----YFASTNGSQIS   86 (251)
Q Consensus        27 ~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~----------------k~~~----~~~~~~~~~i~   86 (251)
                      .+-+++|+.|++.|++..+     ....|.+||.++...+.+++.                .+++    ...-.+...|.
T Consensus        47 ~Tnn~aEl~A~i~AL~~~~-----~~v~i~tDS~~v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~  121 (150)
T 3qio_A           47 TTNQKTELQAIYLALQDSG-----LEVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVY  121 (150)
T ss_dssp             CCHHHHHHHHHHHHHHHSC-----SEEEEEESCHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEE
T ss_pred             CCHHHHHHHHHHHHHHhCC-----CcEEEEeCcHHHHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceE
Confidence            4559999999999998754     223588999888776665431                1111    11124677899


Q ss_pred             EEeeccCCCCccchHHhHHHhhhhcC
Q psy12035         87 FMWIPSHSNIALNDKADQLAKNSINS  112 (251)
Q Consensus        87 ~~WvPgH~gI~GNE~AD~lAk~a~~~  112 (251)
                      |.|||||+|++|||.||+||++|+..
T Consensus       122 ~~wV~gH~g~~~Ne~AD~LA~~a~~~  147 (150)
T 3qio_A          122 LAWVPAHKGIGGNEQVDKLVSAGIRK  147 (150)
T ss_dssp             EEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred             EEEccCcCCChhHHHHHHHHHHHHHH
Confidence            99999999999999999999999865

>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}

Probab=99.11  E-value=4.8e-11  Score=93.61  Aligned_cols=83  Identities=18%  Similarity=0.197  Sum_probs=59.6

Q ss_pred             hhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhh-hhhh----------------HHH----HHHhhCCCce
Q psy12035         27 DTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSN-IIAK----------------QEY----YFASTNGSQI   85 (251)
Q Consensus        27 ~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~-~~~k----------------~~~----~~~~~~~~~i   85 (251)
                      .+-+++|+.+++.|++.....   ...-|.+|+..+...+.+ ++.+                +++    ..+ .....|
T Consensus        42 ~Tnn~aEl~A~~~AL~~~~~~---~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~-~~~~~v  117 (146)
T 3h08_A           42 TTNNRMELMAAIKGLEALKEP---ARVQLYSDSAYLVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKL-TTLHRV  117 (146)
T ss_dssp             ECHHHHHHHHHHHHHHTCSSC---CEEEEEESCHHHHHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHH-HHHSEE
T ss_pred             CcHHHHHHHHHHHHHHhcCcc---CcEEEEeChHHHHHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHH-HhhCce
Confidence            455899999999999987652   223588999888776655 4321                111    111 123569


Q ss_pred             EEEeeccCCCCccchHHhHHHhhhhcCC
Q psy12035         86 SFMWIPSHSNIALNDKADQLAKNSINSK  113 (251)
Q Consensus        86 ~~~WvPgH~gI~GNE~AD~lAk~a~~~~  113 (251)
                      .|.|||||+|++|||.||+|||+|+...
T Consensus       118 ~~~~V~gH~g~~~N~~AD~LA~~a~~~~  145 (146)
T 3h08_A          118 TFHKVKGHSDNPYNSRADELARLAIKEN  145 (146)
T ss_dssp             EEEECCC-CCSHHHHHHHHHHHHHHHHC
T ss_pred             EEEEcCCcCCcHhHHHHHHHHHHHHHhC
Confidence            9999999999999999999999997643

>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...

Probab=99.07  E-value=2.1e-10  Score=91.00  Aligned_cols=85  Identities=22%  Similarity=0.245  Sum_probs=62.8

Q ss_pred             hhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhhh----------------HHHH---HHhhCCCceEE
Q psy12035         27 DTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAK----------------QEYY---FASTNGSQISF   87 (251)
Q Consensus        27 ~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~k----------------~~~~---~~~~~~~~i~~   87 (251)
                      .+.+++|+.|++.|++.....   ....|.+|+..+...+..++.+                +++.   ........|.|
T Consensus        42 ~tn~~aEl~A~~~aL~~~~~~---~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~v~~  118 (155)
T 1jl1_A           42 TTNNRMELMAAIVALEALKEH---AEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW  118 (155)
T ss_dssp             ECHHHHHHHHHHHHHHTCCSC---CEEEEEECCHHHHHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTCEEEE
T ss_pred             CcHHHHHHHHHHHHHHHhCcC---CcEEEEeCHHHHHHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHccCceEE
Confidence            356999999999999987653   2235889998887666543210                1111   11123468999


Q ss_pred             EeeccCCCCccchHHhHHHhhhhcCCC
Q psy12035         88 MWIPSHSNIALNDKADQLAKNSINSKL  114 (251)
Q Consensus        88 ~WvPgH~gI~GNE~AD~lAk~a~~~~~  114 (251)
                      .|||||+|++|||.||+|||+|+..+.
T Consensus       119 ~wV~gH~g~~~Ne~AD~LA~~a~~~~~  145 (155)
T 1jl1_A          119 EWVKGHAGHPENERADELARAAAMNPT  145 (155)
T ss_dssp             EECCSSTTCHHHHHHHHHHHHHHHSCC
T ss_pred             EEcCCCCCCHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999998765

>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A

Probab=99.05  E-value=2.8e-10  Score=90.53  Aligned_cols=83  Identities=20%  Similarity=0.211  Sum_probs=61.4

Q ss_pred             hhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhhh----------------HHHH---HHhhCCCceEE
Q psy12035         27 DTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAK----------------QEYY---FASTNGSQISF   87 (251)
Q Consensus        27 ~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~k----------------~~~~---~~~~~~~~i~~   87 (251)
                      .+.+++|+.|++.||+..+..   ....|.+|+..+...+..++.+                .++.   .....+..|.|
T Consensus        44 ~tn~~aEl~A~~~AL~~~~~~---~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~v~~  120 (158)
T 2e4l_A           44 TTNNRMELLAPIVALEALKEP---CKIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLHQIDW  120 (158)
T ss_dssp             ECHHHHHHHHHHHHHHTCSSC---CEEEEEECCHHHHHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTTSEEEE
T ss_pred             CccHHHHHHHHHHHHHHhccC---CeEEEEeCHHHHHHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHccCcEEE
Confidence            456999999999999987654   2335889998877666543221                1110   01123468999


Q ss_pred             EeeccCCCCccchHHhHHHhhhhcC
Q psy12035         88 MWIPSHSNIALNDKADQLAKNSINS  112 (251)
Q Consensus        88 ~WvPgH~gI~GNE~AD~lAk~a~~~  112 (251)
                      .|||||+|++|||.||+|||+|+..
T Consensus       121 ~wV~gH~g~~~Ne~AD~LAk~a~~~  145 (158)
T 2e4l_A          121 RWVKGHAGHAENERCDQLARAAAEA  145 (158)
T ss_dssp             EECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred             EEccCCCCchhHHHHHHHHHHHHHh
Confidence            9999999999999999999999876

>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*

Probab=99.03  E-value=2e-10  Score=90.90  Aligned_cols=86  Identities=21%  Similarity=0.305  Sum_probs=61.1

Q ss_pred             hhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhhh----------------HHHH-HH--hhCCCceEE
Q psy12035         27 DTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAK----------------QEYY-FA--STNGSQISF   87 (251)
Q Consensus        27 ~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~k----------------~~~~-~~--~~~~~~i~~   87 (251)
                      .+.+++|+.|++.||+....... ....|.+|+..+...+.+++.+                +++. .+  ...+..|.|
T Consensus        48 ~tn~~aEl~A~~~aL~~~~~~~~-~~v~i~tDS~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~~~v~~  126 (154)
T 2qkb_A           48 QTNQRAEIHAACKAIEQAKTQNI-NKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQW  126 (154)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTTC-CEEEEEESCHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTCEEEE
T ss_pred             CchHHHHHHHHHHHHHHHHhCCC-ceEEEEECcHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcCCceEE
Confidence            46699999999999987643211 1235889998877666553321                1111 11  123567999


Q ss_pred             EeeccCCCCccchHHhHHHhhhhcCC
Q psy12035         88 MWIPSHSNIALNDKADQLAKNSINSK  113 (251)
Q Consensus        88 ~WvPgH~gI~GNE~AD~lAk~a~~~~  113 (251)
                      .|||||+|++|||.||+|||+|+..+
T Consensus       127 ~~V~~H~g~~~N~~AD~LA~~a~~~~  152 (154)
T 2qkb_A          127 MHVPGHSGFIGNEEADRLAREGAKQS  152 (154)
T ss_dssp             EECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred             EEccCCCCCHhHHHHHHHHHHHHHhc
Confidence            99999999999999999999998754

>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A

Probab=98.99  E-value=1.5e-10  Score=92.93  Aligned_cols=102  Identities=15%  Similarity=0.095  Sum_probs=67.1

Q ss_pred             chhchhccccchhhhh---hhhhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHh-----hhhhhHH----HH
Q psy12035          9 DYGCSIFMNANKKYLS---HLDTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFS-----NIIAKQE----YY   76 (251)
Q Consensus         9 ~Yga~iw~~~~~~~~~---~l~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~-----~~~~k~~----~~   76 (251)
                      .||+.|..........   .-.+.+++|+.+++.|++...    .....|.+|+.++...+-     +.+..++    +.
T Consensus        40 g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~----~~~v~I~tDS~~vi~~iw~~~~g~~v~n~dl~~~l~  115 (165)
T 3p1g_A           40 RAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAE----GKKLNVYTDSRYAFATAHVHSEGREIKNKNEILALL  115 (165)
T ss_dssp             EEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHTB----TSEEEEEECCHHHHHHHHSCCCSCCCSSHHHHHHHH
T ss_pred             EEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHcc----CceEEEEEchHHHHhhhhcccCCCcccCHHHHHHHH
Confidence            4666665543211111   223559999999999999873    123358899987776541     0011111    11


Q ss_pred             HHhhCCCceEEEeeccCCC-----CccchHHhHHHhhhhcCCC
Q psy12035         77 FASTNGSQISFMWIPSHSN-----IALNDKADQLAKNSINSKL  114 (251)
Q Consensus        77 ~~~~~~~~i~~~WvPgH~g-----I~GNE~AD~lAk~a~~~~~  114 (251)
                      ..-..+..|.|.|||||+|     ++|||.||++||+|+..+.
T Consensus       116 ~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~  158 (165)
T 3p1g_A          116 KALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAV  158 (165)
T ss_dssp             HHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCC
Confidence            1123578899999999999     9999999999999987654

>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A

Probab=98.97  E-value=5.5e-10  Score=89.62  Aligned_cols=85  Identities=15%  Similarity=0.238  Sum_probs=62.9

Q ss_pred             hhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhh-hhhh----------------HHHH-H--HhhCCCceE
Q psy12035         27 DTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSN-IIAK----------------QEYY-F--ASTNGSQIS   86 (251)
Q Consensus        27 ~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~-~~~k----------------~~~~-~--~~~~~~~i~   86 (251)
                      .+.+++|+.+++.||+......   ...|.+|+..+...+.+ ++.+                +++. .  .......|.
T Consensus        46 ~Tnn~aEl~Ai~~AL~~~~~~~---~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~~~v~  122 (166)
T 1ril_A           46 TTNNRMELKAAIEGLKALKEPC---EVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVR  122 (166)
T ss_dssp             ECHHHHHHHHHHHHHHSCCSCC---EEEEECCCHHHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTSEEE
T ss_pred             CcHHHHHHHHHHHHHHHhccCC---eEEEEeChHHHHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhcCeEE
Confidence            4569999999999999876542   33588999888766655 3321                1111 0  112346899


Q ss_pred             EEeeccCCCCccchHHhHHHhhhhcCCC
Q psy12035         87 FMWIPSHSNIALNDKADQLAKNSINSKL  114 (251)
Q Consensus        87 ~~WvPgH~gI~GNE~AD~lAk~a~~~~~  114 (251)
                      |.|||||+|++|||.||+|||+|+....
T Consensus       123 ~~wV~gH~g~~~Ne~AD~LAk~a~~~~~  150 (166)
T 1ril_A          123 FHFVKGHTGHPENERVDREARRQAQSQA  150 (166)
T ss_dssp             CCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred             EEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999987764

>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A

Probab=98.85  E-value=3.1e-10  Score=89.24  Aligned_cols=85  Identities=20%  Similarity=0.110  Sum_probs=54.9

Q ss_pred             hhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhh-hhhhH----HHH-HHhhCCCceEEEeeccCCCCccchH
Q psy12035         28 TIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSN-IIAKQ----EYY-FASTNGSQISFMWIPSHSNIALNDK  101 (251)
Q Consensus        28 ~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~-~~~k~----~~~-~~~~~~~~i~~~WvPgH~gI~GNE~  101 (251)
                      +.+++|+.|++.||+.......  ...|.+|+.-+.+...+ +..+.    .+. ..+.-...|.|.|||||+|++|||.
T Consensus        49 tNn~aEl~A~~~AL~~a~~~~~--~v~I~tDS~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~~v~~~wV~gH~g~~~Ne~  126 (147)
T 2kq2_A           49 RNVAGEIAAALYAVKKASQLGV--KIRILHDYAGIAFWATGEWKAKNEFTQAYAKLMNQYRGIYSFEKVKAHSGNEFNDY  126 (147)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHTC--CCCBSSCCSTHHHHTTSSSSCCHHHHHHHHCGGGGGSTTCCBCCCCCCCCCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHCCC--eEEEEECcHHHHHHHhCCCccCCcchHHHHHHHHHhcCCeeEEEecCcCCCcchHH
Confidence            5699999999999985322222  23577888533322211 10001    011 1111122899999999999999999


Q ss_pred             HhHHHhhhhcCCC
Q psy12035        102 ADQLAKNSINSKL  114 (251)
Q Consensus       102 AD~lAk~a~~~~~  114 (251)
                      ||+|||+|+....
T Consensus       127 AD~LA~~a~~~~~  139 (147)
T 2kq2_A          127 VDMKAKSALGIRD  139 (147)
T ss_dssp             HHHHHHHHHTCCC
T ss_pred             HHHHHHHHHhccc
Confidence            9999999998765

>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}

Probab=98.76  E-value=3.8e-09  Score=84.61  Aligned_cols=81  Identities=14%  Similarity=-0.049  Sum_probs=51.0

Q ss_pred             hHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhhh----------------HH----HHHHhhCCCceEEEe
Q psy12035         30 HHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAK----------------QE----YYFASTNGSQISFMW   89 (251)
Q Consensus        30 ~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~k----------------~~----~~~~~~~~~~i~~~W   89 (251)
                      +++++.|+..|++........  ..|.+||.++.+.+.+++.+                ++    +..+-.....|+|.|
T Consensus        57 ~~Aei~Al~~al~~al~~~~~--v~I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~  134 (165)
T 2lsn_A           57 QMAEIAAVEFACKKALKIPGP--VLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQH  134 (165)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSC--EEEEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred             HHHHHHHHHHHHHHHhcCCCe--EEEEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEE
Confidence            455555555544322111112  24889999988777654431                11    122223345899999


Q ss_pred             eccCCCC------ccchHHhHHHhhhhcC
Q psy12035         90 IPSHSNI------ALNDKADQLAKNSINS  112 (251)
Q Consensus        90 vPgH~gI------~GNE~AD~lAk~a~~~  112 (251)
                      ||||+|+      +|||.||+||++|+..
T Consensus       135 VkgH~g~~~~~~~~gNe~AD~LA~~gA~~  163 (165)
T 2lsn_A          135 EKGHQPTNTSIHTEGNALADKLATQGSYV  163 (165)
T ss_dssp             CCSSSCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCccCCCCChHHHHHHHHHHHhhhh
Confidence            9999995      5899999999998753

>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B

Probab=98.73  E-value=5e-09  Score=99.09  Aligned_cols=79  Identities=19%  Similarity=0.233  Sum_probs=57.7

Q ss_pred             hhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhh--h----HHHHHHhhCCCceEEEeeccCCCCccch
Q psy12035         27 DTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIA--K----QEYYFASTNGSQISFMWIPSHSNIALND  100 (251)
Q Consensus        27 ~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~--k----~~~~~~~~~~~~i~~~WvPgH~gI~GNE  100 (251)
                      .+-+++|+.|++.|++..+     ....|.+|+..+.+.+.++..  +    +++...-.....|.+.|||||+|++|||
T Consensus       471 ~TNn~aEl~A~i~aL~~~~-----~~v~I~tDS~~v~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~wV~~H~g~~~Ne  545 (555)
T 1mu2_A          471 TTNQQAELEAFAMALTDSG-----PKVNIIVDSQYVMGIVASQPTESESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQ  545 (555)
T ss_dssp             CCHHHHHHHHHHHHHHTSC-----SEEEEEESCHHHHHHHHTCCSEESCHHHHHHHHHHHHCSEEEEEECCSSSCCTTHH
T ss_pred             CCHHHHHHHHHHHHHHcCC-----CeEEEEEehHHHHHHHhcccccccHHHHHHHHHHhccCCcEEEEEEECCCCChhHH
Confidence            4559999999999998722     123588999888776654221  1    1122222346789999999999999999


Q ss_pred             HHhHHHhhhh
Q psy12035        101 KADQLAKNSI  110 (251)
Q Consensus       101 ~AD~lAk~a~  110 (251)
                      .||+|||+|+
T Consensus       546 ~AD~LA~~a~  555 (555)
T 1mu2_A          546 EVDHLVSQGI  555 (555)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHhhC
Confidence            9999999874

>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...

Probab=98.61  E-value=6.4e-09  Score=98.39  Aligned_cols=78  Identities=22%  Similarity=0.256  Sum_probs=54.6

Q ss_pred             hhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhhh--HH----HHHHhhCCCceEEEeeccCCCCccch
Q psy12035         27 DTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAK--QE----YYFASTNGSQISFMWIPSHSNIALND  100 (251)
Q Consensus        27 ~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~k--~~----~~~~~~~~~~i~~~WvPgH~gI~GNE  100 (251)
                      .+-+++|+.|++.|++..+     ....|.+||..+...+.++..+  ++    +...-.....|.+.|||||+|++|||
T Consensus       474 ~TNn~aEl~Ai~~aL~~~~-----~~v~I~tDS~~vi~~i~~~~~~~~~~l~~~~~~~l~~~~~v~~~wV~~H~g~~~Ne  548 (557)
T 2zd1_A          474 TTNQKTELQAIYLALQDSG-----LEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNE  548 (557)
T ss_dssp             CCHHHHHHHHHHHHHHHSC-----SEEEEEECCHHHHHHHTTCCSEESSHHHHHHHHHHHHCSEEEEEECCSSSCCTTCC
T ss_pred             CCHHHHHHHHHHHHHHhCC-----CcEEEEeChHHHHHHHhcCCccCCHHHHHHHHHHHhcCCCEEEEEcCCCCCChhHH
Confidence            4559999999999998873     2235889998887766543221  11    11111234589999999999999999


Q ss_pred             HHhHHHhhh
Q psy12035        101 KADQLAKNS  109 (251)
Q Consensus       101 ~AD~lAk~a  109 (251)
                      .||+|||+|
T Consensus       549 ~AD~LA~~a  557 (557)
T 2zd1_A          549 QVDKLVSAG  557 (557)
T ss_dssp             GGGGCC---
T ss_pred             HHHHHHhcC
Confidence            999999976

>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}

Probab=97.91  E-value=7.8e-06  Score=62.47  Aligned_cols=82  Identities=18%  Similarity=0.144  Sum_probs=54.1

Q ss_pred             hhhhHHHHHHHHhhhccCCccchh---hhccccchHHHHHHHHhhhhh-h--------HHHHHH-hhCCCceEEEeeccC
Q psy12035         27 DTIHHMGIRLISRALKSSPVNSLY---AESAILPLSVRRRLLFSNIIA-K--------QEYYFA-STNGSQISFMWIPSH   93 (251)
Q Consensus        27 ~~~~r~~l~~i~~a~rt~~~~~~~---~~~~i~p~~l~~~~~~~~~~~-k--------~~~~~~-~~~~~~i~~~WvPgH   93 (251)
                      .+.+++|+.+++.|++........   ...-|.+|+..+...+.+... +        +.+..+ ..+-..|+|.|||+ 
T Consensus        43 ~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~-  121 (140)
T 3u3g_D           43 TTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPR-  121 (140)
T ss_dssp             ECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCG-
T ss_pred             CchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCc-
Confidence            456999999999999876543221   022477888887765543111 1        111122 23335899999995 


Q ss_pred             CCCccchHHhHHHhhhhcC
Q psy12035         94 SNIALNDKADQLAKNSINS  112 (251)
Q Consensus        94 ~gI~GNE~AD~lAk~a~~~  112 (251)
                         +|||.||+|||+|+..
T Consensus       122 ---~~N~~AD~LA~~a~~~  137 (140)
T 3u3g_D          122 ---EKNARADELVNEAIDK  137 (140)
T ss_dssp             ---GGGHHHHHHHHHHHHH
T ss_pred             ---hhhHHHHHHHHHHHHh
Confidence               8999999999998653

>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}

Probab=97.81  E-value=1.3e-05  Score=61.48  Aligned_cols=81  Identities=22%  Similarity=0.217  Sum_probs=54.1

Q ss_pred             hhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhh-hhH--------HHHHHhhCCCceEEEeeccCCCCc
Q psy12035         27 DTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNII-AKQ--------EYYFASTNGSQISFMWIPSHSNIA   97 (251)
Q Consensus        27 ~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~-~k~--------~~~~~~~~~~~i~~~WvPgH~gI~   97 (251)
                      .+.+++|+.+++.|++....... ...-|.+|+..+...+.+.. .+.        .+..+..+...|+|.|||+    +
T Consensus        44 ~tn~~aEl~A~~~aL~~a~~~~~-~~v~i~tDS~~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~  118 (141)
T 3hst_B           44 ATNNVAEYRGLIAGLDDAVKLGA-TEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR----A  118 (141)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----G
T ss_pred             CchHHHHHHHHHHHHHHHHHCCC-ceEEEEeChHHHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----c
Confidence            35599999999999986543211 11247788887776554311 111        1112234557899999997    8


Q ss_pred             cchHHhHHHhhhhcC
Q psy12035         98 LNDKADQLAKNSINS  112 (251)
Q Consensus        98 GNE~AD~lAk~a~~~  112 (251)
                      |||.||+|||+|...
T Consensus       119 ~N~~AD~LA~~a~~~  133 (141)
T 3hst_B          119 RNTYADRLANDAMDA  133 (141)
T ss_dssp             GCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHH
Confidence            999999999998644

>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A

Probab=97.60  E-value=2.3e-05  Score=60.94  Aligned_cols=80  Identities=13%  Similarity=0.062  Sum_probs=52.1

Q ss_pred             hhhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhh-h----HH----HH-HHhhCCCceEEEeeccCCC
Q psy12035         26 LDTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIA-K----QE----YY-FASTNGSQISFMWIPSHSN   95 (251)
Q Consensus        26 l~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~-k----~~----~~-~~~~~~~~i~~~WvPgH~g   95 (251)
                      ..+.+++|+.|++.|++........ ..-|.+|+..+...+.+... +    ..    +. .+...  .|.|.|||+   
T Consensus        45 ~~tnn~aEl~A~~~aL~~a~~~g~~-~v~i~tDS~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~--~v~~~~V~~---  118 (149)
T 2ehg_A           45 NSTNNVAEYSGLICLMETMLRLGIS-SPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKL--NATLIWVPR---  118 (149)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHTCC-SCEEEESCHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHH--TCEEEECCG---
T ss_pred             CccHHHHHHHHHHHHHHHHHHcCCC-EEEEEeChHHHHHHHhCccccCCHHHHHHHHHHHHHHhcC--CEEEEEcCC---
Confidence            4456999999999999765432111 12477888877765543211 0    01    11 11222  499999999   


Q ss_pred             CccchHHhHHHhhhhcC
Q psy12035         96 IALNDKADQLAKNSINS  112 (251)
Q Consensus        96 I~GNE~AD~lAk~a~~~  112 (251)
                       ++||.||+|||+|+..
T Consensus       119 -~~N~~AD~LA~~a~~~  134 (149)
T 2ehg_A          119 -EENKEADRLSRVAYEL  134 (149)
T ss_dssp             -GGCHHHHHHHHHHHHH
T ss_pred             -cccHHHHHHHHHHHHh
Confidence             5899999999988644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	251
d1mu2a1	126	c.55.3.1 (A:430-555) HIV RNase H (Domain of revers	9e-05
d1jl1a_	152	c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli	3e-04
d1rila_	147	c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermoph	5e-04

>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]} Length = 126

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: HIV RNase H (Domain of reverse transcriptase)
species: Human immunodeficiency virus type 2 [TaxId: 11709]

 Score = 39.1 bits (90), Expect = 9e-05
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 1/84 (1%)

Query: 28  TIHHMGIRLISRALKSSP-VNSLYAESAILPLSVRRRLLFSNIIAKQEYYFASTNGSQIS 86
           T     +   + AL  S    ++  +S  +   V  +   S      +          I 
Sbjct: 43  TNQQAELEAFAMALTDSGPKVNIIVDSQYVMGIVASQPTESESKIVNQIIEEMIKKEAIY 102

Query: 87  FMWIPSHSNIALNDKADQLAKNSI 110
             W+P+H  I  N + D L    I
Sbjct: 103 VAWVPAHKGIGGNQEVDHLVSQGI 126

>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]} Length = 152

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: RNase H (RNase HI)
species: Escherichia coli [TaxId: 562]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 11/43 (25%), Positives = 23/43 (53%)

Query: 74  EYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKLLD 116
           +   A+    QI + W+  H+    N++AD+LA+ +  +  L+
Sbjct: 103 QRLDAALGQHQIKWEWVKGHAGHPENERADELARAAAMNPTLE 145

>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: RNase H (RNase HI)
species: Thermus thermophilus [TaxId: 274]

 Score = 37.2 bits (85), Expect = 5e-04
 Identities = 6/38 (15%), Positives = 17/38 (44%)

Query: 76  YFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSK 113
              +    ++ F ++  H+    N++ D+ A+    S+
Sbjct: 107 LLLAMAPHRVRFHFVKGHTGHPENERVDREARRQAQSQ 144

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	251
d1jl1a_	152	RNase H (RNase HI) {Escherichia coli [TaxId: 562]}	99.32
d1rila_	147	RNase H (RNase HI) {Thermus thermophilus [TaxId: 2	99.23
d1mu2a1	126	HIV RNase H (Domain of reverse transcriptase) {Hum	99.21
d1s1ta1	110	HIV RNase H (Domain of reverse transcriptase) {Hum	97.47
d1zbfa1	132	BH0863-like Ribonuclease H {Bacillus halodurans [T	83.84

>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: RNase H (RNase HI)
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=4.4e-13  Score=103.75  Aligned_cols=108  Identities=20%  Similarity=0.199  Sum_probs=66.4

Q ss_pred             cchhchhccccchhhhh---hhhhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhh-------------
Q psy12035          8 LDYGCSIFMNANKKYLS---HLDTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIA-------------   71 (251)
Q Consensus         8 ~~Yga~iw~~~~~~~~~---~l~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~-------------   71 (251)
                      ..||+.++..+......   ...+-+++|+.+++.|++........   .+.+++.........+..             
T Consensus        18 aG~G~vi~~~~~~~~~~~~~~~~tnn~aE~~Ai~~Al~~~~~~~~i---~i~tds~~~i~~~~~~~~~~~~~~~~~~~~~   94 (152)
T d1jl1a_          18 GGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHAEV---ILSTDSQYVRQGITQWIHNWKKRGWKTADKK   94 (152)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCCSCCEE---EEEECCHHHHHHHHTTHHHHHHTTTBCTTSC
T ss_pred             EEEEEEEEECCeEEEeccccCcccHHHHHHhhhhhhhhhhcccceE---EEeecceeeEEcccchhhHhHhccchhcccC
Confidence            34677666544322111   12234889999999999875543221   245555444433222111             


Q ss_pred             ---hHHH---HHHhhCCCceEEEeeccCCCCccchHHhHHHhhhhcCCCCCCC
Q psy12035         72 ---KQEY---YFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKLLDFY  118 (251)
Q Consensus        72 ---k~~~---~~~~~~~~~i~~~WvPgH~gI~GNE~AD~lAk~a~~~~~~~~~  118 (251)
                         ..++   .........|+|+|||||+|++|||.||+|||+|+..+.++..
T Consensus        95 ~~~n~~~~~~i~~~~~~~~V~~~wV~gH~g~~gNe~AD~LAk~aa~~~~~~d~  147 (152)
T d1jl1a_          95 PVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERADELARAAAMNPTLEDT  147 (152)
T ss_dssp             BCTTHHHHHHHHHHTTTCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCBCCT
T ss_pred             eeecHHHHHHHHHHhhcceeEEEEecccCCCccHHHHHHHHHHHHhCCCCCcc
Confidence               0111   1112355689999999999999999999999999998875543

>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: RNase H (RNase HI)
species: Thermus thermophilus [TaxId: 274]

Probab=99.23  E-value=2.3e-12  Score=99.41  Aligned_cols=102  Identities=15%  Similarity=0.230  Sum_probs=65.1

Q ss_pred             chhchhccccchhhh---hhhhhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhh-hh-------------
Q psy12035          9 DYGCSIFMNANKKYL---SHLDTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNI-IA-------------   71 (251)
Q Consensus         9 ~Yga~iw~~~~~~~~---~~l~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~-~~-------------   71 (251)
                      -||+.+.........   ....+-+++|+.+++.||+..+....   ..|.+|+......+... ..             
T Consensus        20 G~g~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~---i~i~tds~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (147)
T d1rila_          20 GWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEPCE---VDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGK   96 (147)
T ss_dssp             EEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCSCCE---EEEECCCHHHHHHHHSSHHHHHHHTTSBCTTSS
T ss_pred             EEEEEEEECCcceEEecccccccHHHHHHHHHHHHhhhccCCce---EEEecchhhhhccccccchhhhhhccccccccc
Confidence            466655554432211   12235589999999999988765332   23677776655433211 00             


Q ss_pred             ---hHHH---HHHhhCCCceEEEeeccCCCCccchHHhHHHhhhhcCC
Q psy12035         72 ---KQEY---YFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSK  113 (251)
Q Consensus        72 ---k~~~---~~~~~~~~~i~~~WvPgH~gI~GNE~AD~lAk~a~~~~  113 (251)
                         ..++   .........|+|.|||||+|++|||.||+|||+|+...
T Consensus        97 ~v~n~dL~~~l~~~~~~~~v~~~wVkgHsg~~gNe~AD~LAk~aa~~~  144 (147)
T d1rila_          97 PVKNRDLWEALLLAMAPHRVRFHFVKGHTGHPENERVDREARRQAQSQ  144 (147)
T ss_dssp             BCTTHHHHHHHHHHHTTSEEECCCCCGGGSCTHHHHHHHHHHHHHTSS
T ss_pred             cchhHHHHHHHHHHhhhcccceEEccCCCCCcchHHHHHHHHHHHHHh
Confidence               0111   01123467899999999999999999999999998764

>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: HIV RNase H (Domain of reverse transcriptase)
species: Human immunodeficiency virus type 2 [TaxId: 11709]

Probab=99.21  E-value=6.2e-12  Score=94.55  Aligned_cols=78  Identities=21%  Similarity=0.205  Sum_probs=57.1

Q ss_pred             hhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhh-------hHHHHHHhhCCCceEEEeeccCCCCccc
Q psy12035         27 DTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIA-------KQEYYFASTNGSQISFMWIPSHSNIALN   99 (251)
Q Consensus        27 ~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~-------k~~~~~~~~~~~~i~~~WvPgH~gI~GN   99 (251)
                      .+.+++|+.|++.|++.....     ..|.+|+..+.+.+.+...       .+.+.. ..+...|.|.|||||+|++||
T Consensus        42 ~tnn~AEl~Ai~~al~~~~~~-----i~I~tDS~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~wV~gH~g~~gN  115 (126)
T d1mu2a1          42 TTNQQAELEAFAMALTDSGPK-----VNIIVDSQYVMGIVASQPTESESKIVNQIIEE-MIKKEAIYVAWVPAHKGIGGN  115 (126)
T ss_dssp             CCHHHHHHHHHHHHHHTSCSE-----EEEEESCHHHHHHHHTCCSEESCHHHHHHHHH-HHHCSEEEEEECCSSSCCTTH
T ss_pred             CcchHHHHHHHHHHhccCCcc-----eEEEechHHHHHHHhcCCccccchHHHHHHHH-hhhcceeEEEEEeCCCCCcch
Confidence            456999999999999875432     3588999888765543221       111111 223468999999999999999


Q ss_pred             hHHhHHHhhhh
Q psy12035        100 DKADQLAKNSI  110 (251)
Q Consensus       100 E~AD~lAk~a~  110 (251)
                      |.||+||++|.
T Consensus       116 e~AD~LA~~ai  126 (126)
T d1mu2a1         116 QEVDHLVSQGI  126 (126)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHhhC
Confidence            99999999873

>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: HIV RNase H (Domain of reverse transcriptase)
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=97.47  E-value=3.8e-05  Score=55.22  Aligned_cols=61  Identities=18%  Similarity=0.193  Sum_probs=42.5

Q ss_pred             hhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhh-------hHHHHHHhhCCCceEEEeeccC
Q psy12035         27 DTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIA-------KQEYYFASTNGSQISFMWIPSH   93 (251)
Q Consensus        27 ~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~-------k~~~~~~~~~~~~i~~~WvPgH   93 (251)
                      .+-|++|++|++.||+..+.+     ..|.+||.++...+.++..       ++.+..+ .....|.+.|||||
T Consensus        43 ~TNn~aEl~Avi~aL~~~~~~-----v~I~TDS~yvi~~i~~~~~~~~~~l~~~il~~l-~~~~~v~i~WVpgH  110 (110)
T d1s1ta1          43 TTNQKTELQAIYLALQDSGLE-----VNIVTDSQYALGIIQAQPDQSESELVNQIIEQL-IKKEKVYLAWVPAH  110 (110)
T ss_dssp             CCHHHHHHHHHHHHHHHSCSE-----EEEEECCHHHHHHHHHCCSEESCHHHHHHHHHH-HHCSEEEEEECCSS
T ss_pred             CcHHHHHHHHHHHHHHhCCCe-----EEEEEehHHHHHHHhcCccccchHHHHHHHHHH-hcCCceEEEEeCCC
Confidence            356999999999999875543     3589999998876654222       1212222 23468999999999

>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: BH0863-like Ribonuclease H
species: Bacillus halodurans [TaxId: 86665]

Probab=83.84  E-value=0.059  Score=39.11  Aligned_cols=94  Identities=13%  Similarity=-0.048  Sum_probs=57.0

Q ss_pred             cchhchhccccchhhhh---hhhhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhh---------hHHH
Q psy12035          8 LDYGCSIFMNANKKYLS---HLDTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIA---------KQEY   75 (251)
Q Consensus         8 ~~Yga~iw~~~~~~~~~---~l~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~---------k~~~   75 (251)
                      ..||+.++........+   .-.+=+++|++|++.||+.+......+  -|.+||.++...+.+.--         .+++
T Consensus        20 ~g~g~v~~~~~~~~~~sg~~~~~TNN~aEl~A~i~aL~~~~~~~~~i--~I~tDS~yvi~wv~~~~~kt~~~~~vkN~~l   97 (132)
T d1zbfa1          20 VEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRK--PIYSNSQTAIKWVKDKKAKSTLVRNEETALI   97 (132)
T ss_dssp             EEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTTCCC--CEEESCHHHHHHHHHTCCCCCCCCSTTTHHH
T ss_pred             heEEEEEEcCCEEEEEEcCcCccchHHHHHHHHHHHHHHhhcCCceE--EEEeccHHHHHHHHhCceecCcCCCcccHHH
Confidence            45887766554221111   223349999999999998766543333  488999887654432110         0111


Q ss_pred             HH----H--hhCCCceEEEeeccCCCCccchHHh
Q psy12035         76 YF----A--STNGSQISFMWIPSHSNIALNDKAD  103 (251)
Q Consensus        76 ~~----~--~~~~~~i~~~WvPgH~gI~GNE~AD  103 (251)
                      ..    +  --+...+.+.|+..|++--||..||
T Consensus        98 ~~~i~~a~~~lk~h~~~~~~~KW~~~~wG~i~AD  131 (132)
T d1zbfa1          98 WKLVDEAEEWLNTHTYETPILKWQTDKWGEIKAD  131 (132)
T ss_dssp             HHHHHHHHHHHHHCCCCCCEEECCHHHHCSCTTC
T ss_pred             HHHHHHHHHHHHhCCcCceeEEecCcccccCCCC
Confidence            10    0  0234557888999999888988887