Psyllid ID: psy12122

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410--
Protein Sequence
MVILLVIFLVRVVLREIKGAPRRPPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGSPITHNRLLLEEIRSLTRKHFLQTWNSTWAATNPTHITHNKLRRIKSSISPWSTSCQKSRLDEVCLMRLRIGHTKITHSFLFRREDPPVCDKCNVPLTVEHIVLSCRKMRFRPNSFLNSTLSDVLKDDPDSVATLMRFLKRNNFPKELYRRSGLYPGSPGFYRGEDLKRVQSVMYRGYEGVGAPNFRRPSHSKEAKTVILCASRSDCLMTSTFAENAECFIHLGIPAVYLYTDTVYSSVLHLFCELRPACILENSDVARDRKRILIYQKTVSLKSETIHQAFRVGQEWVFKAHHINSPSLGKAGKRQQHAIAWMVDGQPSGYQPRPKGIGCKLSQFFRTRR
Secondary Structure (PSIPRED)
cEEEHHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccEEEEEccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccEEEcccccccccccccccccHHHHccccHHHHHHHHHHHHHccccHHHHHHccccccccccccccccccHHHHHHccccccccccccccccccccEEEEEEccccccccccccccccEEEEEEcccEEEEEEHHHHHHHHHHHHcccccEEccccHHHccccEEEEEEEEccccHHHHHHHHHHccEEEEEcccccccccccccccccEEEEEEEccccccccccccccccccccHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHccccccccccHcccEEEEEEcccccEEEEEEEccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHEccccccccccccccccccHEEHHEHEcccccccHHHHccccccccccccccccEEEEEEEccHHHHHHHHHHccccHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHcHHHHHcccccccccccccccccHHccEEEEEcccccccHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHcccHEEEcccHHHHHHHHHHHHHcEEcccHHHHHHHHHccHHHHEEHccccccccccccccccEEEEEEEcccccccccccccccEEHcHHccccc
Coil and Loop (DISEMBL)
MVILLVIFLVRVVLREikgaprrppkslwgqktnlifflcpkspkygkvsynhvgiagneaadreakstlgspithnrLLLEEIRSLTRKHFLQTWnstwaatnpthithnKLRRikssispwstscqksrldEVCLMRLRightkithsflfrredppvcdkcnvpltVEHIVLSCrkmrfrpnsflnstlsdvlkddpdSVATLMRFLKrnnfpkelyrrsglypgspgfyrgedlKRVQSVMYRgyegvgapnfrrpshskeaKTVILCasrsdclmtstfAENAECFIHLGIPAVYLYTDTVYSSVLHLFCElrpacilensdvaRDRKRILIYQKTVSLKSETIHQAFRVGQEWVFkahhinspslgkagKRQQHAIAWMVdgqpsgyqprpkgigcklSQFFRTRR
Flexible Loop (DISEMBL)
MVILLVIFLVRVVLreikgaprrppkslwgqkTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAkstlgspithnrLLLEEIRSLTRKHFLQTWnstwaatnpthithNKLRrikssispwstscqksrLDEVCLMRLRIGHTkithsflfrredppvcdkCNVPLTVEHIVLScrkmrfrpnsflnstlsdvlkdDPDSVATLMRFlkrnnfpkelyrrsglypgspgfyrgeDLKRVQSVMYRGYEgvgapnfrrpshsKEAKTVILCASRSDCLMTSTFAENAECFIHLGIPAVYLYTDTVYSSVLHLFCELRPACIlensdvardRKRILIYQktvslksetIHQAFRVGQEWVFKAHHINSPSLGKAGKRQQHAIAWMVDGQpsgyqprpkgigcklsqffrtrr
Low Complexity Region (SEG)
MvillviflvrvvlrEIKGAPRRPPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGSPITHNRLLLEEIRSLTRKHFLQTWNSTWAATNPTHITHNKLRRIKSSISPWSTSCQKSRLDEVCLMRLRIGHTKITHSFLFRREDPPVCDKCNVPLTVEHIVLSCRKMRFRPNSFLNSTLSDVLKDDPDSVATLMRFLKRNNFPKELYRRSGLYPGSPGFYRGEDLKRVQSVMYRGYEGVGAPNFRRPSHSKEAKTVILCASRSDCLMTSTFAENAECFIHLGIPAVYLYTDTVYSSVLHLFCELRPACILENSDVARDRKRILIYQKTVSLKSETIHQAFRVGQEWVFKAHHINSPSLGKAGKRQQHAIAWMVDGQPSGYQPRPKGIGCKLSQFFRTRR
Disordered region (IsUnstruct)
*VILLVIFLVRVVLREIKGAPRRPPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGN************SPITHNRLLLEEIRSLTRKHFLQTWNSTWAATNPTHITHNKLRRIKSSISPWSTSCQKSRLDEVCLMRLRIGHTKITHSFLFRREDPPVCDKCNVPLTVEHIVLSCRKMRFRPNSFLNSTLSDVLKDDPDSVATLMRFLKRNNFPKELYRRSGLYPGSPGFYRGEDLKRVQSVMYRGYEGVGAP**********AKTVILCASRSDCLMTSTFAENAECFIHLGIPAVYLYTDTVYSSVLHLFCELRPACILENSDVARDRKRILIYQKTVSLKSETIHQAFRVGQEWVFKAHHINS***********HAIAWMVD*************************
Disordered Region (DISOPRED)
MVILLVIFLVRVVLRE*****************NLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLG*PITHNRLLLEEIRSLTRKHFLQTWNSTWAATNPTHITHNKLRRIKSSISPWSTSCQKSRLDEVCLMRLRIGHTKITHSFLFRREDPPVCDKCNVPLTVEHIVLSCRKMRFRPNSFLNSTLSDVLKDDPDSVATLMRFLKRNNFPKELYRRS***************KRVQSVMYRGYEGV************EAKTVILCASRSDCLMTSTFAENAECFIHLGIPAVYLYTDTVYSSVLHLFCELRPACILENSDVARDRKRILIYQKTVSLKSETIHQAFRVGQEWVFKAHHI**************AIAWMVDGQP***QPRPKGIGCKLSQFFRT**
Disordered Region (DISEMBL)
MVILLVIFLVRVVLREIKGAPRRPPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGSPITHNRLLLEEIRSLTRKHFLQTWNSTWAATNPTHITHNKLRRIKSSISPWSTSCQKSRLDEVCLMRLRIGHTKITHSFLFRREDPPVCDKCNVPLTVEHIVLSCRKMRFRPNSFLNSTLSDVLKDDPDSVATLMRFLKRNNFPKELYRRSGLYPGSPGFYRGEDLKRVQSVMYRGYEGVGAPNFRRPSHSKEAKTVILCASRSDCLMTSTFAENAECFIHLGIPAVYLYTDTVYSSVLHLFCELRPACILENSDVARDRKRILIYQKTVSLKSETIHQAFRVGQEWVFKAHHINSPS********QHAIAWMVDGQPSGYQPRPKGIGCKLSQFFRTRR
Disordered Region (DISPRO)
MVILLVIFLVRVVLREIKGAPRRPPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGSPITHNRLLLEEIRSLTRKHFLQTWNSTWAATNPTHITHNKLRRIKSSISPWSTSCQKSRLDEVCLMRLRIGHTKITHSFLFRREDPPVCDKCNVPLTVEHIVLSCRKMRFRPNSFLNSTLSDVLKDDPDSVATLMRFLKRNNFPKELYRRSGLYPGSPGFYRGEDLKRVQSVMYRGYEGVGAPNFRRPSHSKEAKTVILCASRSDCLMTSTFAENAECFIHLGIPAVYLYTDTVYSSVLHLFCELRPACILENSDVARDRKRILIYQKTVSLKSETIHQAFRVGQEWVFKAHHINSPSLGKAGKRQQHAIAWMVDGQPSGYQPRPKGIGCKLSQFF****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVILLVIFLVRVVLREIKGAPRRPPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGSPITHNRLLLEEIRSLTRKHFLQTWNSTWAATNPTHITHNKLRRIKSSISPWSTSCQKSRLDEVCLMRLRIGHTKITHSFLFRREDPPVCDKCNVPLTVEHIVLSCRKMRFRPNSFLNSTLSDVLKDDPDSVATLMRFLKRNNFPKELYRRSGLYPGSPGFYRGEDLKRVQSVMYRGYEGVGAPNFRRPSHSKEAKTVILCASRSDCLMTSTFAENAECFIHLGIPAVYLYTDTVYSSVLHLFCELRPACILENSDVARDRKRILIYQKTVSLKSETIHQAFRVGQEWVFKAHHINSPSLGKAGKRQQHAIAWMVDGQPSGYQPRPKGIGCKLSQFFRTRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
125901787	1222	pol-like protein [Biomphalaria glabrata]	0.356	0.120	0.389	4e-20
443693558	502	hypothetical protein CAPTEDRAFT_189741,	0.310	0.254	0.384	1e-17
427791321	1210	Putative tick transposon, partial [Rhipi	0.376	0.128	0.344	1e-17
427791807	1212	Putative tick transposon, partial [Rhipi	0.376	0.127	0.344	1e-17
443712830	397	hypothetical protein CAPTEDRAFT_202466 [	0.339	0.352	0.354	4e-17
443695973	261	hypothetical protein CAPTEDRAFT_23017, p	0.310	0.490	0.377	5e-17
328720146	164	PREDICTED: hypothetical protein LOC10056	0.359	0.902	0.360	1e-16
443721618	471	hypothetical protein CAPTEDRAFT_200496,	0.473	0.414	0.291	1e-16
443730613	233	hypothetical protein CAPTEDRAFT_206814 [	0.378	0.669	0.321	3e-16
443733872	400	hypothetical protein CAPTEDRAFT_197082 [	0.313	0.322	0.326	2e-15

>gi|125901787|gb|ABN58714.1| pol-like protein [Biomphalaria glabrata]

 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 86/154 (55%), Gaps = 7/154 (4%)

Query: 52   NHVGIAGNEAADREAKSTLGSPITHNRLLLEEIRSLTRKHFLQTWNSTWAATNPTHITHN 111
            +HVGI GNEAADREAK  L   ++  ++   ++R        + W + W A      TH+
Sbjct: 1061 SHVGIEGNEAADREAKRALNHAVSGTQIPYSDLRQSIASATYREWQNRWEAE-----THS 1115

Query: 112  KLRRIKSSISPWSTSCQKSRLDEVCLMRLRIGHTKITHSFLFRREDPPVCDKCNVPLTVE 171
            KLR+I + +    TS   +R     + RLRIGHT ITHSF+ +RE+PP+C+ C+  LTVE
Sbjct: 1116 KLRQIVADVRWRPTSKGLTRRGSTTMSRLRIGHTYITHSFVLKREEPPLCEYCDSRLTVE 1175

Query: 172  HIVLSC-RKMRFRPNSFLNSTLSDVLKD-DPDSV 203
            HI++ C R    R   F  + L  +  + DP  V
Sbjct: 1176 HILVDCPRYQDVRAKHFRATNLKTLFNNVDPGKV 1209

Source: Biomphalaria glabrata

Species: Biomphalaria glabrata

Genus: Biomphalaria

Family: Planorbidae

Class: Gastropoda

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|443693558|gb|ELT94903.1| hypothetical protein CAPTEDRAFT_189741, partial [Capitella teleta]

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 71/143 (49%), Gaps = 15/143 (10%)

Query: 35  LIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGSPITHNRLLLEEIRSLTRKHFLQ 94
           ++F  CP          +HVGI GNE ADR AK  L  P+T   L   + +S  R +   
Sbjct: 180 VVFIWCP----------SHVGILGNEVADRLAKQALVMPVTKLPLPHTDYKSPIRSYVKS 229

Query: 95  TWNSTWAATNPTHITHNKLRRIKSSISPWSTSCQKSRLDEVCLMRLRIGHTKITHSFLFR 154
            W + W        T NKL  I+  IS W    Q  R  E+ L R RIGH+ +TH +L R
Sbjct: 230 LWQNEWDEE-----TDNKLHSIQPVISEWKQGPQIDRRGEIVLARARIGHSHLTHGYLLR 284

Query: 155 REDPPVCDKCNVPLTVEHIVLSC 177
           RE  P C  C   LTV+HI++ C
Sbjct: 285 REVAPFCIPCQSLLTVKHILIDC 307

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|427791321|gb|JAA61112.1| Putative tick transposon, partial [Rhipicephalus pulchellus]

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 22/177 (12%)

Query: 52   NHVGIAGNEAADREAKSTLGSPITHNRLLLEEIRSLTRKHFLQTWNSTWAATNPTHITHN 111
            +HVGI GNE AD+ A       +T  R+ L++ +   R   L  W   W +      T N
Sbjct: 1040 SHVGIPGNEKADKCASLAAHKTLTKIRIPLKDSQRTIRLALLAKWQQQWDSC-----TSN 1094

Query: 112  KLRRIKSSISPWSTSCQKSRLDEVCLMRLRIGHTKITHSFLFRREDPPVCDKCNVPLTVE 171
            KL  +K ++  W     + R  EV L RLRIGHT +TH+FL  +E+ P+C+KC  PLT+ 
Sbjct: 1095 KLHLVKPTLGEWKNCRHQERFIEVILCRLRIGHTHLTHNFLLTKEEQPMCEKCQEPLTLI 1154

Query: 172  HIVLSCRKMRFRPNSF----------LNSTL---SDVLKDDPDSVATLMRFLKRNNF 215
            HI++ C  +  +   +          L+ TL    D L   PD    ++ FLK  NF
Sbjct: 1155 HILILCPNIETQRQKYFSKLYKQYIPLHPTLLLGDDALVPLPD----VLSFLKECNF 1207

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427791807|gb|JAA61355.1| Putative tick transposon, partial [Rhipicephalus pulchellus]

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 22/177 (12%)

Query: 52   NHVGIAGNEAADREAKSTLGSPITHNRLLLEEIRSLTRKHFLQTWNSTWAATNPTHITHN 111
            +HVGI GNE AD+ A       +T  R+ L++ +   R   L  W   W +      T N
Sbjct: 1043 SHVGIPGNEKADKCASLAAHKTLTKIRIPLKDSQRTIRLALLAKWQQQWDSC-----TSN 1097

Query: 112  KLRRIKSSISPWSTSCQKSRLDEVCLMRLRIGHTKITHSFLFRREDPPVCDKCNVPLTVE 171
            KL  +K ++  W     + R  EV L RLRIGHT +TH+FL  +E+ P+C+KC  PLT+ 
Sbjct: 1098 KLHLVKPTLGEWKNCRHQERFIEVILCRLRIGHTHLTHNFLLTKEEQPMCEKCQEPLTLI 1157

Query: 172  HIVLSCRKMRFRPNSF----------LNSTL---SDVLKDDPDSVATLMRFLKRNNF 215
            HI++ C  +  +   +          L+ TL    D L   PD    ++ FLK  NF
Sbjct: 1158 HILILCPNIETQRQKYFSKLYKQYIPLHPTLLLGDDALVPLPD----VLSFLKECNF 1210

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443712830|gb|ELU05953.1| hypothetical protein CAPTEDRAFT_202466 [Capitella teleta]

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 73/155 (47%), Gaps = 15/155 (9%)

Query: 35  LIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGSPITHNRLLLEEIRSLTRKHFLQ 94
           ++F  CP          +HVGI GNE ADR+AK  L  P+T   L   + +S  R +   
Sbjct: 229 VVFIWCP----------SHVGILGNEVADRQAKQALVMPVTKLPLPHTDYKSPIRSYVKS 278

Query: 95  TWNSTWAATNPTHITHNKLRRIKSSISPWSTSCQKSRLDEVCLMRLRIGHTKITHSFLFR 154
            W + W        T NKL  I+  IS W    Q  R  E+ L   RIGH+ +TH +L R
Sbjct: 279 LWQNEWDGE-----TDNKLHIIQPVISEWKQGPQIDRRGEIVLACARIGHSHLTHGYLLR 333

Query: 155 REDPPVCDKCNVPLTVEHIVLSCRKMRFRPNSFLN 189
           RE  P C  C   LTV+HI++ C         + N
Sbjct: 334 REVAPFCIPCQSLLTVKHILIDCIDFEISRRKYFN 368

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|443695973|gb|ELT96755.1| hypothetical protein CAPTEDRAFT_23017, partial [Capitella teleta]

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/143 (37%), Positives = 71/143 (49%), Gaps = 15/143 (10%)

Query: 35  LIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGSPITHNRLLLEEIRSLTRKHFLQ 94
           ++F  CP          +HVGI GNE ADR AK  L  P+T   L   + +S  R +   
Sbjct: 134 VVFIWCP----------SHVGILGNEVADRLAKQALVMPVTKLPLPHTDYKSPIRSYVKS 183

Query: 95  TWNSTWAATNPTHITHNKLRRIKSSISPWSTSCQKSRLDEVCLMRLRIGHTKITHSFLFR 154
            W + W        T NKL  I+  IS W    Q  R  E+ L R RIGH+ +TH +L R
Sbjct: 184 LWQNEWDEE-----TDNKLHSIQPVISEWKQGPQIDRRGEIVLARARIGHSHLTHGYLLR 238

Query: 155 REDPPVCDKCNVPLTVEHIVLSC 177
           RE  P C  C   L+V+HI++ C
Sbjct: 239 REVAPFCIPCQSLLSVKHILIDC 261

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|328720146|ref|XP_003246964.1| PREDICTED: hypothetical protein LOC100568990, partial [Acyrthosiphon pisum]

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 78/158 (49%), Gaps = 10/158 (6%)

Query: 53  HVGIAGNEAADREAKSTLGSPITH--NRLLLEEIRSLTRKHFLQTWNSTWAATNPTHITH 110
           H GI GNE AD EA     SP T   N    E+ +   ++   Q W   W         H
Sbjct: 13  HCGIQGNEKADLEASKAASSPDTPLLNIYTYEDKKKQIKQVLDQKWLIQWINQ------H 66

Query: 111 NKLRRIKSSISPWSTSCQKSRLDEVCLMRLRIGHTKITHSFLFRREDPPVCDKCNVPLTV 170
            KL +IK++I  W      +R +E  L RLRIGHT ITH  L  + DPP+C+ C V LTV
Sbjct: 67  TKLNQIKNNIQTWKNPGL-NRKEETILNRLRIGHTFITHRHLMEKNDPPICEMCGVDLTV 125

Query: 171 EHIVLSCRKM-RFRPNSFLNSTLSDVLKDDPDSVATLM 207
           +HI+  CRK    R    ++  + + L  D  S+  ++
Sbjct: 126 KHIITECRKYDDMRKKYNISQQIGEALGPDTQSIRNII 163

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443721618|gb|ELU10867.1| hypothetical protein CAPTEDRAFT_200496, partial [Capitella teleta]

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 102/223 (45%), Gaps = 28/223 (12%)

Query: 26  KSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGSP-ITHNRLLLEEI 84
           KS+  Q+  ++F  CP          +HVGI GNE AD  AK  L S  +    +   ++
Sbjct: 110 KSISQQEKIVVFMWCP----------SHVGIPGNEMADTLAKEALSSTNLAELPVPASDL 159

Query: 85  RSLTRKHFLQTWNSTWAATNPTHITHNKLRRIKSSISPWSTSCQKSRLDEVCLMRLRIGH 144
           R L +K+    W   W   +      NKL  I  +I PW    ++ R +E+ L R+RIGH
Sbjct: 160 RCLIKKYIRSRWQHEWDEQH-----SNKLHSIHPTIGPWPPCQREKRREEIVLARIRIGH 214

Query: 145 TKITHSFLFRREDPPVCDKCNVPLTVEHIVLSCRK---MRFRPNSFLNSTLSDVLKDDPD 201
           T  TH ++ R +D   C  C  PLTV+HI++ C     +R+R      + L+   K    
Sbjct: 215 THYTHDYIPRGDDQTECVACVCPLTVQHIIIECADFLHIRYRDKGPFRA-LTTQFK---A 270

Query: 202 SVATLM-----RFLKRNNFPKELYRRSGLYPGSPGFYRGEDLK 239
           ++AT +      F K+   P   +R +     S      +D++
Sbjct: 271 AIATFVFISVSEFGKKQRLPLRFFRSTSGSDQSSAISMSQDMQ 313

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|443730613|gb|ELU16038.1| hypothetical protein CAPTEDRAFT_206814 [Capitella teleta]

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 18/174 (10%)

Query: 4   LLVIFLVRVVLREIKGAPRRPPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAAD 63
           LL I+ V  +L     AP++    L+ +  +L+   CP          +H+G+ GNE AD
Sbjct: 53  LLAIYEVLTLLE--CAAPQKY-TILYNRGFDLVILWCP----------SHIGVVGNERAD 99

Query: 64  REAKSTLGSPITHNRLLLEEIRSLTRKHFLQTWNSTWAATNPTHITHNKLRRIKSSISPW 123
             AK  L       R+   +  S+    +   W + W+        +NKL  ++  I   
Sbjct: 100 LLAKEALSFTACDVRIPAFDFNSVAYSFYRDKWQALWSLEQ-----NNKLHSVQPIIKKL 154

Query: 124 STSCQKSRLDEVCLMRLRIGHTKITHSFLFRREDPPVCDKCNVPLTVEHIVLSC 177
           + S ++ R  E+ L R RIGHT +TH +L RRE PP C  C  PLTV+HI++ C
Sbjct: 155 TNSSREDRRKEIVLARARIGHTHLTHGYLLRRELPPFCVHCQCPLTVKHILIEC 208

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|443733872|gb|ELU18078.1| hypothetical protein CAPTEDRAFT_197082 [Capitella teleta]

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 15/144 (10%)

Query: 34  NLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGSPITHNRLLLEEIRSLTRKHFL 93
           +L+   CP          +HVG+ GNE AD  AK  L       R+   + + +T + + 
Sbjct: 100 DLVMTWCP----------SHVGVMGNERADLLAKEALSFTTCTIRIPSSDFKPITHEFYK 149

Query: 94  QTWNSTWAATNPTHITHNKLRRIKSSISPWSTSCQKSRLDEVCLMRLRIGHTKITHSFLF 153
           + W   W++        NKL  I+ ++  W+ S ++ R +E+ L R RIGH+ +TH +L 
Sbjct: 150 EKWQEQWSSEQ-----ENKLYCIQPTLGKWAKSSREIRREEIVLARARIGHSHLTHGYLL 204

Query: 154 RREDPPVCDKCNVPLTVEHIVLSC 177
           RRE PPVC  C   L+++HI + C
Sbjct: 205 RREMPPVCIPCQNILSIKHIFIEC 228

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	412
PRK08719	147	ribonuclease H; Reviewed	98.55
PRK00203	150	rnhA ribonuclease H; Reviewed	98.37
PRK06548	161	ribonuclease H; Provisional	98.29
PF00075	132	RNase_H: RNase H; InterPro: IPR002156 The RNase H	98.22
COG0328	154	RnhA Ribonuclease HI [DNA replication, recombinati	98.04
cd06222	130	RnaseH RNase H (RNase HI) is an endonuclease that	97.47
KOG3752|consensus	371		96.96
PF13966	86	zf-RVT: zinc-binding in reverse transcriptase	95.54
PRK13907	128	rnhA ribonuclease H; Provisional	90.14

>PRK08719 ribonuclease H; Reviewed

Probab=98.55  E-value=7e-08  Score=86.83  Aligned_cols=45  Identities=36%  Similarity=0.432  Sum_probs=37.7

Q ss_pred             CCCcchHhhhhhhhhhcCCCCCeEEEEecCCCCCCCChHHhHHHhhccC
Q psy12122         23 RPPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLG   71 (412)
Q Consensus        23 ~~~~~lw~~~~nli~~~s~~~I~liWWVPGHsGI~GNE~ADrLAKeAa~   71 (412)
                      .++.|+|...+.+   .....|++.| ||||+|++|||.||+||++|+.
T Consensus       102 v~n~dl~~~i~~l---~~~~~i~~~~-VkgH~g~~~Ne~aD~lA~~a~~  146 (147)
T PRK08719        102 VANRDLWQQVDEL---RARKYVEVEK-VTAHSGIEGNEAADMLAQAAAE  146 (147)
T ss_pred             cccHHHHHHHHHH---hCCCcEEEEE-ecCCCCChhHHHHHHHHHHHhh
Confidence            4568999874444   3467899999 9999999999999999999975

>PRK00203 rnhA ribonuclease H; Reviewed

Probab=98.37  E-value=1.5e-07  Score=84.06  Aligned_cols=45  Identities=22%  Similarity=0.249  Sum_probs=37.1

Q ss_pred             CcchHhhhhhhhhhcCCCCCeEEEEecCCCCCCCChHHhHHHhhccCCC
Q psy12122         25 PKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGSP   73 (412)
Q Consensus        25 ~~~lw~~~~nli~~~s~~~I~liWWVPGHsGI~GNE~ADrLAKeAa~~~   73 (412)
                      +.|||.....   ......|.+.| ||||+|++|||.||+|||+|+...
T Consensus        99 n~dl~~~i~~---l~~~~~v~~~w-V~~H~~~~~N~~AD~lA~~a~~~~  143 (150)
T PRK00203         99 NVDLWQRLDA---ALKRHQIKWHW-VKGHAGHPENERCDELARAGAEEA  143 (150)
T ss_pred             cHHHHHHHHH---HhccCceEEEE-ecCCCCCHHHHHHHHHHHHHHHHh
Confidence            5789987433   34557899998 999999999999999999998664

>PRK06548 ribonuclease H; Provisional

Probab=98.29  E-value=3.3e-07  Score=84.12  Aligned_cols=46  Identities=20%  Similarity=0.161  Sum_probs=38.1

Q ss_pred             CCcchHhhhhhhhhhcCCCCCeEEEEecCCCCCCCChHHhHHHhhccCCC
Q psy12122         24 PPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGSP   73 (412)
Q Consensus        24 ~~~~lw~~~~nli~~~s~~~I~liWWVPGHsGI~GNE~ADrLAKeAa~~~   73 (412)
                      .+.|||.+...+   .....|+|.| ||||+|++|||.||+||++|+...
T Consensus        98 ~N~dL~~~l~~l---~~~~~v~~~w-VkgHsg~~gNe~aD~LA~~aa~~~  143 (161)
T PRK06548         98 LNQEIIQEIDSL---MENRNIRMSW-VNAHTGHPLNEAADSLARQAANNF  143 (161)
T ss_pred             ccHHHHHHHHHH---HhcCceEEEE-EecCCCCHHHHHHHHHHHHHHHHh
Confidence            379999884444   3456899988 999999999999999999988554

>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site

Probab=98.22  E-value=6.2e-07  Score=76.01  Aligned_cols=31  Identities=32%  Similarity=0.346  Sum_probs=27.5

Q ss_pred             cCCCCCeEEEEecCCCCC-CCChHHhHHHhhcc
Q psy12122         39 LCPKSPKYGKVSYNHVGI-AGNEAADREAKSTL   70 (412)
Q Consensus        39 ~s~~~I~liWWVPGHsGI-~GNE~ADrLAKeAa   70 (412)
                      ..+..|.+.| ||||+|+ .|||.||+|||+|+
T Consensus       100 ~~~~~v~~~~-V~~H~~~~~~N~~aD~lAk~a~  131 (132)
T PF00075_consen  100 SRGIKVRFRW-VPGHSGVPQGNERADRLAKEAA  131 (132)
T ss_dssp             HHSSEEEEEE-SSSSSSSHHHHHHHHHHHHHHH
T ss_pred             ccceEEeeee-ccCcCCCchhHHHHHHHHHHhc
Confidence            3467799998 9999999 69999999999986

This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....

>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]

Probab=98.04  E-value=3.7e-06  Score=77.08  Aligned_cols=46  Identities=26%  Similarity=0.278  Sum_probs=38.7

Q ss_pred             CCcchHhhhhhhhhhcCCC-CCeEEEEecCCCCCCCChHHhHHHhhccCCC
Q psy12122         24 PPKSLWGQKTNLIFFLCPK-SPKYGKVSYNHVGIAGNEAADREAKSTLGSP   73 (412)
Q Consensus        24 ~~~~lw~~~~nli~~~s~~-~I~liWWVPGHsGI~GNE~ADrLAKeAa~~~   73 (412)
                      .++|||.+   ++.....+ .|.+.| ||||.|.++||.||+||++|+...
T Consensus       100 kn~dl~~~---~~~~~~~~~~v~~~W-VkgH~g~~~NeraD~LA~~~~~~~  146 (154)
T COG0328         100 KNKDLWEE---LDELLKRHELVFWEW-VKGHAGHPENERADQLAREAARAA  146 (154)
T ss_pred             ccHHHHHH---HHHHHhhCCeEEEEE-eeCCCCChHHHHHHHHHHHHHHhh
Confidence            35689987   66666666 788887 999999999999999999997764

>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner

Probab=97.47  E-value=0.00023  Score=57.11  Aligned_cols=44  Identities=30%  Similarity=0.362  Sum_probs=32.3

Q ss_pred             CCcchHhhhhhhhhhcCCCCCeEEEEecCCCCCCCChHHhHHHhhcc
Q psy12122         24 PPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTL   70 (412)
Q Consensus        24 ~~~~lw~~~~nli~~~s~~~I~liWWVPGHsGI~GNE~ADrLAKeAa   70 (412)
                      ....+|....+++  .....+++.| ||+|+|+++|+.||.+||+|.
T Consensus        87 ~~~~~~~~i~~~~--~~~~~~~i~~-v~~h~~~~~n~~ad~la~~~~  130 (130)
T cd06222          87 KNVDLWQRLLALL--KRFHKVRFEW-VPGHSGIEGNERADALAKEAA  130 (130)
T ss_pred             hhHHHHHHHHHHH--hCCCeEEEEE-cCCCCCCcchHHHHHHHHhhC
Confidence            4444554433332  2456788888 999999999999999999873

One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.

>KOG3752|consensus

Probab=96.96  E-value=0.00051  Score=70.62  Aligned_cols=46  Identities=24%  Similarity=0.214  Sum_probs=37.4

Q ss_pred             cchHhhhhhhhhhcCCCCCeEEEEecCCCCCCCChHHhHHHhhccCC
Q psy12122         26 KSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGS   72 (412)
Q Consensus        26 ~~lw~~~~nli~~~s~~~I~liWWVPGHsGI~GNE~ADrLAKeAa~~   72 (412)
                      .++..+..+|....+.++|++.| ||||.||.|||+||.+|++++..
T Consensus       320 ~~~~~e~~~l~q~~~~~~vq~~~-V~Gh~gi~gne~Ad~lARkgs~~  365 (371)
T KOG3752|consen  320 QDFFNELDELEQEISNKKVQQEY-VGGHSGILGNEMADALARKGSTL  365 (371)
T ss_pred             chHHHHHHHHHhhhccCceEEEE-ecCcCCcchHHHHHHHHhhhhhh
Confidence            45556666666655678999999 99999999999999999988544

>PF13966 zf-RVT: zinc-binding in reverse transcriptase

Probab=95.54  E-value=0.0086  Score=48.78  Aligned_cols=33  Identities=24%  Similarity=0.382  Sum_probs=27.3

Q ss_pred             ccccCCCCCCCCCCCCc-ccccceeccccccccc
Q psy12122        150 SFLFRREDPPVCDKCNV-PLTVEHIVLSCRKMRF  182 (412)
Q Consensus       150 lhRfnk~DsP~C~~CG~-~ETVeHIL~eCPry~~  182 (412)
                      +++.+...++.|..||. .||++|+|++||....
T Consensus        51 l~~r~~~~~~~C~~C~~~~Et~~Hlf~~C~~a~~   84 (86)
T PF13966_consen   51 LQRRGIQVDPICPLCGNEEETIEHLFFHCPFARE   84 (86)
T ss_pred             hhccCCccCCccccCCCccccccceeccCcCccc
Confidence            34567778899999995 8999999999997643

>PRK13907 rnhA ribonuclease H; Provisional

Probab=90.14  E-value=0.31  Score=41.82  Aligned_cols=41  Identities=17%  Similarity=0.015  Sum_probs=28.1

Q ss_pred             CCcchHhhhhhhhhhcCCCCCeEEEEecCCCCCCCChHHhHHHhhccC
Q psy12122         24 PPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLG   71 (412)
Q Consensus        24 ~~~~lw~~~~nli~~~s~~~I~liWWVPGHsGI~GNE~ADrLAKeAa~   71 (412)
                      ...++|.....+.   ......++.|||.    ++|+.||.+|+.|..
T Consensus        86 ~~~~l~~~~~~l~---~~f~~~~~~~v~r----~~N~~Ad~LA~~a~~  126 (128)
T PRK13907         86 MFAPLLEEALQYI---KSFDLFFIKWIPS----SQNKVADELARKAIL  126 (128)
T ss_pred             hHHHHHHHHHHHH---hcCCceEEEEcCc----hhchhHHHHHHHHHh
Confidence            4577887744433   3334444445998    599999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	412
2qkb_A	154	Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hy	98.54
1jl1_A	155	Ribonuclease HI; RNAse HI, protein stability, ther	98.53
3h08_A	146	RNH (ribonuclease H); RNAse H, 3D-structure, endon	98.5
3qio_A	150	GAG-POL polyprotein; RNAse H, inhibitor, nuclease,	98.47
2e4l_A	158	Ribonuclease HI, RNAse HI; hydrolase, endoribonucl	98.45
3p1g_A	165	Xenotropic murine leukemia virus-related virus (X	98.29
2kq2_A	147	Ribonuclease H-related protein; PSI, NESG, protein	98.29
1ril_A	166	Ribonuclease H; hydrolase(endoribonuclease); 2.80A	98.25
2lsn_A	165	Reverse transcriptase; RNAse H, viral protein; NMR	98.03
1mu2_A	555	HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polym	97.97
2zd1_A	557	Reverse transcriptase/ribonuclease H; P51/P66, het	97.86
3u3g_D	140	Ribonuclease H, RNAse H1; hydrolase, cleave the RN	97.12
3hst_B	141	Protein RV2228C/MT2287; ribonuclease H1, RV2228C N	96.87
2ehg_A	149	Ribonuclease HI; RNAse HI, hyperthermophilic archa	96.3

>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*

Probab=98.54  E-value=3.5e-08  Score=86.34  Aligned_cols=46  Identities=24%  Similarity=0.187  Sum_probs=37.1

Q ss_pred             CCcchHhhhhhhhhhcCCCCCeEEEEecCCCCCCCChHHhHHHhhccCCC
Q psy12122         24 PPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGSP   73 (412)
Q Consensus        24 ~~~~lw~~~~nli~~~s~~~I~liWWVPGHsGI~GNE~ADrLAKeAa~~~   73 (412)
                      .+.+||.+...+   ..+..|.|.| ||||+|++|||.||+|||+|+..+
T Consensus       107 ~n~~l~~~i~~l---~~~~~v~~~~-V~~H~g~~~N~~AD~LA~~a~~~~  152 (154)
T 2qkb_A          107 INKEDFVALERL---TQGMDIQWMH-VPGHSGFIGNEEADRLAREGAKQS  152 (154)
T ss_dssp             TTHHHHHHHHHH---HTTCEEEEEE-CCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred             ccHHHHHHHHHH---HcCCceEEEE-ccCCCCCHhHHHHHHHHHHHHHhc
Confidence            456899874443   3456788888 999999999999999999998754

>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...

Probab=98.53  E-value=3.2e-08  Score=87.04  Aligned_cols=46  Identities=26%  Similarity=0.326  Sum_probs=37.7

Q ss_pred             CCcchHhhhhhhhhhcCCCCCeEEEEecCCCCCCCChHHhHHHhhccCCC
Q psy12122         24 PPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGSP   73 (412)
Q Consensus        24 ~~~~lw~~~~nli~~~s~~~I~liWWVPGHsGI~GNE~ADrLAKeAa~~~   73 (412)
                      .+.++|.....+   .....|.|.| ||||+|++|||.||+|||+|+..+
T Consensus        99 ~n~~l~~~i~~l---~~~~~v~~~w-V~gH~g~~~Ne~AD~LA~~a~~~~  144 (155)
T 1jl1_A           99 KNVDLWQRLDAA---LGQHQIKWEW-VKGHAGHPENERADELARAAAMNP  144 (155)
T ss_dssp             TTHHHHHHHHHH---TTTCEEEEEE-CCSSTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCHHHHHHHHHH---HccCceEEEE-cCCCCCCHHHHHHHHHHHHHHhcc
Confidence            356899874444   3456888888 999999999999999999999776

>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}

Probab=98.50  E-value=2.7e-08  Score=86.00  Aligned_cols=45  Identities=20%  Similarity=0.204  Sum_probs=35.2

Q ss_pred             CCcchHhhhhhhhhhcCCCCCeEEEEecCCCCCCCChHHhHHHhhccCC
Q psy12122         24 PPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGS   72 (412)
Q Consensus        24 ~~~~lw~~~~nli~~~s~~~I~liWWVPGHsGI~GNE~ADrLAKeAa~~   72 (412)
                      .+.+||.....+..   ...|.|.| ||||+|++|||.||+|||+|+..
T Consensus       100 ~n~~l~~~~~~~~~---~~~v~~~~-V~gH~g~~~N~~AD~LA~~a~~~  144 (146)
T 3h08_A          100 ENIDLWQEILKLTT---LHRVTFHK-VKGHSDNPYNSRADELARLAIKE  144 (146)
T ss_dssp             TTHHHHHHHHHHHH---HSEEEEEE-CCC-CCSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh---hCceEEEE-cCCcCCcHhHHHHHHHHHHHHHh
Confidence            45789988554433   35688887 99999999999999999999753

>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A

Probab=98.47  E-value=3.9e-08  Score=86.78  Aligned_cols=46  Identities=20%  Similarity=0.189  Sum_probs=36.4

Q ss_pred             CCcchHhhhhhhhhhcCCCCCeEEEEecCCCCCCCChHHhHHHhhccCC
Q psy12122         24 PPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGS   72 (412)
Q Consensus        24 ~~~~lw~~~~nli~~~s~~~I~liWWVPGHsGI~GNE~ADrLAKeAa~~   72 (412)
                      .+.+||.+...+  ......|.+.| ||||+|++|||.||+|||+|+..
T Consensus       102 ~n~~l~~~l~~~--l~~~~~v~~~w-V~gH~g~~~Ne~AD~LA~~a~~~  147 (150)
T 3qio_A          102 KNVDLVNQIIEQ--LIKKEKVYLAW-VPAHKGIGGNEQVDKLVSAGIRK  147 (150)
T ss_dssp             -CHHHHHHHHHH--HTTCSEEEEEE-CCTTSCCHHHHHHHHHHHTTTSC
T ss_pred             ccHHHHHHHHHH--HhhcCceEEEE-ccCcCCChhHHHHHHHHHHHHHH
Confidence            568899863222  23567899888 99999999999999999999865

>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A

Probab=98.45  E-value=6.8e-08  Score=85.35  Aligned_cols=45  Identities=20%  Similarity=0.237  Sum_probs=36.9

Q ss_pred             CCcchHhhhhhhhhhcCCCCCeEEEEecCCCCCCCChHHhHHHhhccCC
Q psy12122         24 PPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGS   72 (412)
Q Consensus        24 ~~~~lw~~~~nli~~~s~~~I~liWWVPGHsGI~GNE~ADrLAKeAa~~   72 (412)
                      .+.+||.....+   .....|.|.| ||||+|++|||.||+|||+|+..
T Consensus       101 ~n~~l~~~i~~l---~~~~~v~~~w-V~gH~g~~~Ne~AD~LAk~a~~~  145 (158)
T 2e4l_A          101 KNVDLWKRLDKA---AQLHQIDWRW-VKGHAGHAENERCDQLARAAAEA  145 (158)
T ss_dssp             TTHHHHHHHHHH---HTTSEEEEEE-CCTTCCCHHHHHHHHHHHHHHHS
T ss_pred             cCHHHHHHHHHH---HccCcEEEEE-ccCCCCchhHHHHHHHHHHHHHh
Confidence            456899874443   3446888887 99999999999999999999876

>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A

Probab=98.29  E-value=2.1e-07  Score=83.68  Aligned_cols=47  Identities=19%  Similarity=0.084  Sum_probs=37.2

Q ss_pred             CCcchHhhhhhhhhhcCCCCCeEEEEecCCCC-----CCCChHHhHHHhhccCCC
Q psy12122         24 PPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVG-----IAGNEAADREAKSTLGSP   73 (412)
Q Consensus        24 ~~~~lw~~~~nli~~~s~~~I~liWWVPGHsG-----I~GNE~ADrLAKeAa~~~   73 (412)
                      .+.+||.+..  .....+.+|.|.| ||||+|     ++|||+||+|||+|+..+
T Consensus       106 ~n~dl~~~l~--~~l~~~~~v~~~w-VkgH~g~~~~~~~gNe~AD~LA~~aa~~~  157 (165)
T 3p1g_A          106 KNKNEILALL--KALFLPKRLSIIH-CPGHQKGNSAEARGNRMADQAAREAAMKA  157 (165)
T ss_dssp             SSHHHHHHHH--HHTTSBSEEEEEE-CCSSCCSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHH--HHHhcCCceEEEE-ecCCCCCCcCcchHHHHHHHHHHHHHhcC
Confidence            3678898721  2223567899988 999999     999999999999998765

>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A

Probab=98.29  E-value=1.2e-07  Score=82.97  Aligned_cols=30  Identities=33%  Similarity=0.310  Sum_probs=28.3

Q ss_pred             CCeEEEEecCCCCCCCChHHhHHHhhccCCC
Q psy12122         43 SPKYGKVSYNHVGIAGNEAADREAKSTLGSP   73 (412)
Q Consensus        43 ~I~liWWVPGHsGI~GNE~ADrLAKeAa~~~   73 (412)
                      .|.|.| ||||+|++|||.||+|||+|+...
T Consensus       109 ~v~~~w-V~gH~g~~~Ne~AD~LA~~a~~~~  138 (147)
T 2kq2_A          109 IYSFEK-VKAHSGNEFNDYVDMKAKSALGIR  138 (147)
T ss_dssp             TCCBCC-CCCCCCCHHHHHHHHHHHHHHTCC
T ss_pred             CeeEEE-ecCcCCCcchHHHHHHHHHHHhcc
Confidence            889888 999999999999999999999876

>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A

Probab=98.25  E-value=2.1e-07  Score=83.08  Aligned_cols=46  Identities=26%  Similarity=0.403  Sum_probs=37.6

Q ss_pred             CCcchHhhhhhhhhhcCCCCCeEEEEecCCCCCCCChHHhHHHhhccCCC
Q psy12122         24 PPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGSP   73 (412)
Q Consensus        24 ~~~~lw~~~~nli~~~s~~~I~liWWVPGHsGI~GNE~ADrLAKeAa~~~   73 (412)
                      .+.++|.....+.   ....|.|.| ||||+|++|||.||+|||+|+...
T Consensus       104 ~n~~l~~~i~~l~---~~~~v~~~w-V~gH~g~~~Ne~AD~LAk~a~~~~  149 (166)
T 1ril_A          104 KNRDLWEALLLAM---APHRVRFHF-VKGHTGHPENERVDREARRQAQSQ  149 (166)
T ss_dssp             TTHHHHHHHHHHH---TTSEEECCC-CCGGGSCTHHHHHHHHHHHHHTSS
T ss_pred             CcHHHHHHHHHHH---hcCeEEEEE-eeCCCCchhHHHHHHHHHHHHHHh
Confidence            3567998754443   345788887 999999999999999999999876

>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}

Probab=98.03  E-value=9.6e-07  Score=79.55  Aligned_cols=45  Identities=18%  Similarity=0.111  Sum_probs=35.2

Q ss_pred             CCcchHhhhhhhhhhcCCCCCeEEEEecCCCCC------CCChHHhHHHhhccC
Q psy12122         24 PPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGI------AGNEAADREAKSTLG   71 (412)
Q Consensus        24 ~~~~lw~~~~nli~~~s~~~I~liWWVPGHsGI------~GNE~ADrLAKeAa~   71 (412)
                      .+.|||.....+  ......|+|.| ||||+|+      +|||+||+||++|+.
T Consensus       112 kN~dL~~~l~~~--~~~~~~v~~~~-VkgH~g~~~~~~~~gNe~AD~LA~~gA~  162 (165)
T 2lsn_A          112 KHISKWKSIAEC--LSMKPDITIQH-EKGHQPTNTSIHTEGNALADKLATQGSY  162 (165)
T ss_dssp             SSHHHHHHHHHH--HHHCTTCEEEE-CCSSSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHH--HhCCCCEEEEE-EeCCCCccCCCCChHHHHHHHHHHHhhh
Confidence            467999873332  24456899998 9999996      589999999999873

>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B

Probab=97.97  E-value=3.4e-06  Score=87.80  Aligned_cols=56  Identities=16%  Similarity=0.205  Sum_probs=41.5

Q ss_pred             HHHHHHhcCCCCCCcchHhhhhhhhhhcCCCCCeEEEEecCCCCCCCChHHhHHHhhcc
Q psy12122         12 VVLREIKGAPRRPPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTL   70 (412)
Q Consensus        12 ~~l~~i~~~~~~~~~~lw~~~~nli~~~s~~~I~liWWVPGHsGI~GNE~ADrLAKeAa   70 (412)
                      .|++.|.+-....++++|.+...+.  ..+..|.+.| ||||+|++|||.||+|||+|+
T Consensus       500 ~v~~~i~~~~~~~~~~l~~~~~~~~--~~~~~v~~~w-V~~H~g~~~Ne~AD~LA~~a~  555 (555)
T 1mu2_A          500 YVMGIVASQPTESESKIVNQIIEEM--IKKEAIYVAW-VPAHKGIGGNQEVDHLVSQGI  555 (555)
T ss_dssp             HHHHHHHTCCSEESCHHHHHHHHHH--HHCSEEEEEE-CCSSSCCTTHHHHHHHHHTTC
T ss_pred             HHHHHHhcccccccHHHHHHHHHHh--ccCCcEEEEE-EECCCCChhHHHHHHHHHhhC
Confidence            3556666544456778887633332  3456788888 999999999999999999985

>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...

Probab=97.86  E-value=2.9e-06  Score=88.37  Aligned_cols=55  Identities=22%  Similarity=0.261  Sum_probs=39.3

Q ss_pred             HHHHHHhcCCCCCCcchHhhhhhhhhhcCCCCCeEEEEecCCCCCCCChHHhHHHhhc
Q psy12122         12 VVLREIKGAPRRPPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKST   69 (412)
Q Consensus        12 ~~l~~i~~~~~~~~~~lw~~~~nli~~~s~~~I~liWWVPGHsGI~GNE~ADrLAKeA   69 (412)
                      .|++.|.+-+...+.++|.+.....  .....|.+.| ||||+|++|||+||+|||+|
T Consensus       503 ~vi~~i~~~~~~~~~~l~~~~~~~l--~~~~~v~~~w-V~~H~g~~~Ne~AD~LA~~a  557 (557)
T 2zd1_A          503 YALGIIQAQPDKSESELVNQIIEQL--IKKEKVYLAW-VPAHKGIGGNEQVDKLVSAG  557 (557)
T ss_dssp             HHHHHHTTCCSEESSHHHHHHHHHH--HHCSEEEEEE-CCSSSCCTTCCGGGGCC---
T ss_pred             HHHHHHhcCCccCCHHHHHHHHHHH--hcCCCEEEEE-cCCCCCChhHHHHHHHHhcC
Confidence            4667777766555788997532222  3345799988 99999999999999999986

>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}

Probab=97.12  E-value=0.00029  Score=58.73  Aligned_cols=55  Identities=11%  Similarity=0.170  Sum_probs=36.9

Q ss_pred             HHHHHHhcCCCCCCcchHhhhhhhhhh-cCC-CCCeEEEEecCCCCCCCChHHhHHHhhccC
Q psy12122         12 VVLREIKGAPRRPPKSLWGQKTNLIFF-LCP-KSPKYGKVSYNHVGIAGNEAADREAKSTLG   71 (412)
Q Consensus        12 ~~l~~i~~~~~~~~~~lw~~~~nli~~-~s~-~~I~liWWVPGHsGI~GNE~ADrLAKeAa~   71 (412)
                      .|++.|.+.-...+.++|.-...+... ..+ ..|+|.| ||+    +|||.||+|||+|+.
T Consensus        80 ~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~-V~~----~~N~~AD~LA~~a~~  136 (140)
T 3u3g_D           80 LIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVH-IPR----EKNARADELVNEAID  136 (140)
T ss_dssp             HHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEE-CCG----GGGHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEE-cCc----hhhHHHHHHHHHHHH
Confidence            455566654334456777644444433 233 5899988 994    999999999999864

>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}

Probab=96.87  E-value=0.00074  Score=56.72  Aligned_cols=56  Identities=18%  Similarity=0.140  Sum_probs=37.2

Q ss_pred             HHHHHHhcCCCCCCcchHhhhhhhhhhcC-CCCCeEEEEecCCCCCCCChHHhHHHhhccCC
Q psy12122         12 VVLREIKGAPRRPPKSLWGQKTNLIFFLC-PKSPKYGKVSYNHVGIAGNEAADREAKSTLGS   72 (412)
Q Consensus        12 ~~l~~i~~~~~~~~~~lw~~~~nli~~~s-~~~I~liWWVPGHsGI~GNE~ADrLAKeAa~~   72 (412)
                      .|++.|.+.-...+.++|.-...+..... ...|++.| ||+    +|||.||+|||+|+..
T Consensus        77 ~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~-V~~----~~N~~AD~LA~~a~~~  133 (141)
T 3hst_B           77 LVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEW-VPR----ARNTYADRLANDAMDA  133 (141)
T ss_dssp             HHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEE-CCG----GGCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEE-cCC----cccHHHHHHHHHHHHH
Confidence            35556665323345668765443433333 36788887 995    9999999999998654

>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A

Probab=96.30  E-value=0.0027  Score=54.46  Aligned_cols=42  Identities=17%  Similarity=0.036  Sum_probs=31.0

Q ss_pred             CCcchHhhhhhhhhhcCCCCCeEEEEecCCCCCCCChHHhHHHhhccCCC
Q psy12122         24 PPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGSP   73 (412)
Q Consensus        24 ~~~~lw~~~~nli~~~s~~~I~liWWVPGHsGI~GNE~ADrLAKeAa~~~   73 (412)
                      ..+++|.....+....   +|.+.| ||+    ++||.||+|||+|+...
T Consensus        94 ~~~~l~~~i~~l~~~~---~v~~~~-V~~----~~N~~AD~LA~~a~~~~  135 (149)
T 2ehg_A           94 RIIPLYEKAIELKKKL---NATLIW-VPR----EENKEADRLSRVAYELV  135 (149)
T ss_dssp             THHHHHHHHHHHHHHH---TCEEEE-CCG----GGCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC---CEEEEE-cCC----cccHHHHHHHHHHHHhh
Confidence            4567787755444322   599988 999    59999999999987543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	412
d1jl1a_	152	RNase H (RNase HI) {Escherichia coli [TaxId: 562]}	98.85
d1rila_	147	RNase H (RNase HI) {Thermus thermophilus [TaxId: 2	98.83
d1mu2a1	126	HIV RNase H (Domain of reverse transcriptase) {Hum	98.63

>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: RNase H (RNase HI)
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=2.5e-10  Score=96.06  Aligned_cols=46  Identities=28%  Similarity=0.320  Sum_probs=37.6

Q ss_pred             CCcchHhhhhhhhhhcCCCCCeEEEEecCCCCCCCChHHhHHHhhccCCC
Q psy12122         24 PPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGSP   73 (412)
Q Consensus        24 ~~~~lw~~~~nli~~~s~~~I~liWWVPGHsGI~GNE~ADrLAKeAa~~~   73 (412)
                      ++.++|..   +........|+|.| ||||+|++|||+||+|||+|+..+
T Consensus        97 ~n~~~~~~---i~~~~~~~~V~~~w-V~gH~g~~gNe~AD~LAk~aa~~~  142 (152)
T d1jl1a_          97 KNVDLWQR---LDAALGQHQIKWEW-VKGHAGHPENERADELARAAAMNP  142 (152)
T ss_dssp             TTHHHHHH---HHHHTTTCEEEEEE-CCSSTTCHHHHHHHHHHHHHHHSC
T ss_pred             ecHHHHHH---HHHHhhcceeEEEE-ecccCCCccHHHHHHHHHHHHhCC
Confidence            34556765   44445667899998 999999999999999999999887

>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: RNase H (RNase HI)
species: Thermus thermophilus [TaxId: 274]

Probab=98.83  E-value=1.6e-10  Score=97.92  Aligned_cols=47  Identities=28%  Similarity=0.482  Sum_probs=39.3

Q ss_pred             CCCcchHhhhhhhhhhcCCCCCeEEEEecCCCCCCCChHHhHHHhhccCCC
Q psy12122         23 RPPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTLGSP   73 (412)
Q Consensus        23 ~~~~~lw~~~~nli~~~s~~~I~liWWVPGHsGI~GNE~ADrLAKeAa~~~   73 (412)
                      .++.|||..   +.....+.+|.|.| ||||+|++|||.||+|||+|+...
T Consensus        98 v~n~dL~~~---l~~~~~~~~v~~~w-VkgHsg~~gNe~AD~LAk~aa~~~  144 (147)
T d1rila_          98 VKNRDLWEA---LLLAMAPHRVRFHF-VKGHTGHPENERVDREARRQAQSQ  144 (147)
T ss_dssp             CTTHHHHHH---HHHHHTTSEEECCC-CCGGGSCTHHHHHHHHHHHHHTSS
T ss_pred             chhHHHHHH---HHHHhhhcccceEE-ccCCCCCcchHHHHHHHHHHHHHh
Confidence            356889987   44445677899998 999999999999999999998764

>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: HIV RNase H (Domain of reverse transcriptase)
species: Human immunodeficiency virus type 2 [TaxId: 11709]

Probab=98.63  E-value=6.3e-09  Score=86.34  Aligned_cols=56  Identities=16%  Similarity=0.192  Sum_probs=38.9

Q ss_pred             HHHHHHhcCCCCCCcchHhhhhhhhhhcCCCCCeEEEEecCCCCCCCChHHhHHHhhcc
Q psy12122         12 VVLREIKGAPRRPPKSLWGQKTNLIFFLCPKSPKYGKVSYNHVGIAGNEAADREAKSTL   70 (412)
Q Consensus        12 ~~l~~i~~~~~~~~~~lw~~~~nli~~~s~~~I~liWWVPGHsGI~GNE~ADrLAKeAa   70 (412)
                      .|++-+.+-........|..+  +........|.+.| ||||+|++|||+||+|||+|.
T Consensus        71 ~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~w-V~gH~g~~gNe~AD~LA~~ai  126 (126)
T d1mu2a1          71 YVMGIVASQPTESESKIVNQI--IEEMIKKEAIYVAW-VPAHKGIGGNQEVDHLVSQGI  126 (126)
T ss_dssp             HHHHHHHTCCSEESCHHHHHH--HHHHHHCSEEEEEE-CCSSSCCTTHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCccccchHHHHH--HHHhhhcceeEEEE-EeCCCCCcchHHHHHHHHhhC
Confidence            355556654443344455432  22334556899998 999999999999999999983