Psyllid ID: psy12560

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440
Protein Sequence
MEQCPQCKGLVVCSESRLVQDSCGHIKCRMCLLSDSTQCYLCWQKNEHASFIIEAPESDKDEKFTIPDYIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSENTNTINGHLAIEPKEDRINGIEPRESKIIGILAIEPKESIDEIVANELKQSSSNGLLPIEPAPKSSYQNCVRNGSPEKVQVPFNNKVSVIQRVPVIMRATNQGNKNISPKSNKINDSIFKQPFPVKALNGLNFK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccHHHHcccccccccccccccccEEEEEcEEEEEEcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEccccHHHHHccEEEEccHccccEccccHHHHHEHcccccEcccccccEcccccHHHHHHHccccccccccccccccEccccHHHHHHHHcccccccccccccccEccccHHHHHHHHcccccccccccccccEccccHHHHHHHHcccccccccccccccEEccHHHHHHHcHHHHccccEEccccccEEccHHHHHHHcHHHHccccEEccccccEEccHHHHHHHcHHHHccccEEccccccEEccHHHHHHHHHHHHccccEEccccccEEccHHHHHHHHHHccccccccccHHcHHHHHHHHHHHHcccccccccccccccEcccHHHHHHHHHHHHHHHHcccccccccccccEEccccEEccccccccccHccccEccccHHHHHHHHHcccccccccccccccEccccHHHHHccccccc
Coil and Loop (DISEMBL)
meqcpqckglvvcsesrlvqdscghikcrmcllsdstqcylcwqknehasfiieapesdkdekftipdyiqvipgepvmykclkckrqfkvkynckyhihcTSLKaklscdicdktfvnkshldyhklshqdlnpyecsnchkgfknkgklnrhmkihsDSKEQWFCKVCNKALMSVESLKKHMKIHAglknyhcdiceksFIEKNDLIkhqvthsdkkifvcencgksfkRKYDLALHirthfplkrfqcklCDKIFFTLHNMRRHmrihkdrplfechdchksftrkdnlERHVKSihledpsentntinghlaiepkedringiepreskiigilaiepkesIDEIVANElkqsssngllpiepapkssyqncvrngspekvqvpfnnkvsviQRVPVIMRAtnqgnknispksnkindsifkqpfpvkalnglnfk
Flexible Loop (DISEMBL)
meqcpqckglvvcSESRLVQDSCGHIKCRMCLLSDSTQCYLCWQKNEHASFIIEApesdkdekftIPDYIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKhqvthsdkkifVCENCGKSFKRKYDLALHIRthfplkrfqcKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSihledpsentntinghlaiepkedringiepreSKIIGILAIEPKESIDEIVANELKQSSSNGLLPIEPAPKSSYQNCVRNGspekvqvpfnnkvsviQRVPVIMRatnqgnknispksnkindsifkqpfpvkalnglnfk
Low Complexity Region (SEG)
MEQCPQCKGLVVCSESRLVQDSCGHIKCRMCLLSDSTQCYLCWQKNEHASFIIEAPESDKDEKFTIPDYIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSENTNTINGHLAIEPKEDRINGIEPRESKIIGILAIEPKESIDEIVANELKQSSSNGLLPIEPAPKSSYQNCVRNGSPEKVQVPFNNKVSVIQRVPVIMRATNQGnknispksnkindsiFKQPFPVKALNGLNFK
Disordered region (IsUnstruct)
******CKGLVVCSESRLVQDSCGHIKCRMCLLSDSTQCYLCWQKNEHASFIIEAP****DEKFTIPDYIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTR********************************************KIIGILAIEP********************************************VPFNNKVSVIQRVPVIMR************************************
Disordered Region (DISOPRED)
MEQCPQCKGLVVCSESRLVQDSCGHIKCRMCLLSDSTQCYLCWQKNEHASFIIEAPESDKDEKFTIPDYIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSENTNTINGHLAIEPKEDRINGIEPRESKIIGILAIEPKESIDEIVANELKQSSSNGLLPIEPAPKSSY*******************V**IQ***********************NDSIFKQPFPVKALNGLNF*
Disordered Region (DISEMBL)
MEQCPQCKGLVVCSESRLVQDSCGHIKCRMCLLSDSTQCYLCWQKNEHASFIIEAPESDKDEKFTIPDYIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSENTNTINGHLAIEPKEDRINGIEPRESKIIGILAIEPKESIDEIVANELKQSSSNGLLPIEPAPKSSYQNCVRNGSPEKVQVPFNNKVSVIQRVPVIMRATNQGNKNISPKSNKINDSIFKQPFPVKALNGLNFK
Disordered Region (DISPRO)
*EQCPQCKGLVVCSESRLVQDSCGHIKCRMCLLSDSTQCYLCWQKNEHASFIIEAPESDKDEKFTIPDYIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSENTNTINGHLAIEPKEDRINGIEPRESKIIGILAIEPKESIDEIVANELKQSSSNGLLPIEPAPKSSYQNCVRNGSPEKVQVPFNNKVSVIQRVPVIMRATNQGNKNISPKSNKINDSIFKQPFPVKALN*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEQCPQCKGLVVCSESRLVQDSCGHIKCRMCLLSDSTQCYLCWQKNEHASFIIEAPESDKDEKFTIPDYIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSENTNTINGHLAIEPKEDRINGIEPRESKIIGILAIEPKESIDEIVANELKQSSSNGLLPIEPAPKSSYQNCVRNGSPEKVQVPFNNKVSVIQRVPVIMRATNQGNKNISPKSNKINDSIFKQPFPVKALNGLNFK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	440	2.2.26 [Sep-21-2011]
Q9BR84	538	Zinc finger protein 559 O	no	N/A	0.645	0.527	0.332	1e-36
P51523	738	Zinc finger protein 84 OS	no	N/A	0.534	0.318	0.364	1e-35
A1YF12	682	Zinc finger protein 16 OS	N/A	N/A	0.452	0.291	0.405	3e-35
Q9Y2H8	683	Zinc finger protein 510 O	no	N/A	0.495	0.319	0.378	4e-35
Q9Y3M9	751	Zinc finger protein 337 O	no	N/A	0.625	0.366	0.321	8e-35
P10073	491	Zinc finger and SCAN doma	no	N/A	0.538	0.482	0.319	8e-35
Q03938	601	Zinc finger protein 90 OS	no	N/A	0.520	0.381	0.359	1e-34
Q6P1L6	599	Zinc finger protein 343 O	no	N/A	0.509	0.373	0.36	1e-34
P17020	682	Zinc finger protein 16 OS	no	N/A	0.452	0.291	0.4	2e-34
Q8TF45	676	Zinc finger protein 418 O	no	N/A	0.531	0.346	0.343	3e-34

>sp|Q9BR84|ZN559_HUMAN Zinc finger protein 559 OS=Homo sapiens GN=ZNF559 PE=2 SV=1

 Score =  154 bits (389), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 140/289 (48%), Gaps = 5/289 (1%)

Query: 19  VQDSCGHIKCRMCLLSDSTQCYLCWQKNEHASFI-IEAPESDKDEKFTIPDYIQVIP--G 75
            QD     +C+ C    +   YL      H+  + IE  +  K   F+ PD  + I    
Sbjct: 234 TQDGEKFYECKACGKPFTESSYLTQHLRTHSRVLPIEHKKFGKAFAFS-PDLAKHIRLRT 292

Query: 76  EPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNP 135
               Y C +C ++F        HI   + +    C+ C K F + S L  H+ +H    P
Sbjct: 293 RGKHYVCNECGKEFTCFSKLNIHIRVHTGEKPYECNKCGKAFTDSSGLIKHRRTHTGEKP 352

Query: 136 YECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
           YEC  C K F N   L  HM+ H+  K  + CK C KA ++  S K HM+ H G+K Y C
Sbjct: 353 YECKECGKAFANSSHLTVHMRTHTGEKP-YQCKECGKAFINSSSFKSHMQTHPGVKPYDC 411

Query: 196 DICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCD 255
             C K+FI  + LI+H  +HS ++ F CE CGK+F+    L+ H R H   + ++C+ C 
Sbjct: 412 QQCGKAFIRSSFLIRHLRSHSAERPFECEECGKAFRYSSHLSQHKRIHTGERPYKCQKCG 471

Query: 256 KIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDP 304
           + F     +  HMR H     FEC +C K+FTR   L RH++S  +E P
Sbjct: 472 QAFSISSGLTVHMRTHTGERPFECQECGKAFTRSTYLIRHLRSHSVEKP 520

May be involved in transcriptional regulation.
Homo sapiens (taxid: 9606)

>sp|P51523|ZNF84_HUMAN Zinc finger protein 84 OS=Homo sapiens GN=ZNF84 PE=1 SV=2

 Score =  151 bits (381), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/236 (36%), Positives = 121/236 (51%), Gaps = 1/236 (0%)

Query: 71  QVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSH 130
           Q I      Y+C +C++ F+ + +   H    + +    C  C K F  KSHL  H+++H
Sbjct: 394 QTIHTGEKPYECSECRKAFRERSSLINHQRTHTGEKPHGCIQCGKAFSQKSHLISHQMTH 453

Query: 131 QDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGL 190
               P+ CS C K F  K +L RH + H+  K  + C  C KA     SL  H +IH G 
Sbjct: 454 TGEKPFICSKCGKAFSRKSQLVRHQRTHTGEKP-YECSECGKAFSEKLSLTNHQRIHTGE 512

Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQ 250
           K Y C  C K+F +K+ LI HQ TH+ +K + C  CGK+F  K  LA H RTH   K ++
Sbjct: 513 KPYVCSECGKAFCQKSHLISHQRTHTGEKPYECSECGKAFGEKSSLATHQRTHTGEKPYE 572

Query: 251 CKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSE 306
           C+ C+K F     +  H RIH     +EC  C K+F  K  L RH+++   E P E
Sbjct: 573 CRDCEKAFSQKSQLNTHQRIHTGEKPYECSLCRKAFFEKSELIRHLRTHTGEKPYE 628

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|A1YF12|ZNF16_GORGO Zinc finger protein 16 OS=Gorilla gorilla gorilla GN=ZNF16 PE=3 SV=1

 Score =  149 bits (377), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 81/200 (40%), Positives = 107/200 (53%), Gaps = 1/200 (0%)

Query: 105 KAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQ 164
           +A   CD C KTF   S L  H  SH     Y+CS C K F+     +RH   HS S+  
Sbjct: 234 EASFMCDDCGKTFSQNSVLKNHHRSHMSEKAYQCSECGKAFRGHSDFSRHQSHHS-SERP 292

Query: 165 WFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
           + C  C KA     SLKKH K H   K Y C+ C K+F   ++LI+HQ  HS +K +VC 
Sbjct: 293 YMCNECGKAFSQNSSLKKHQKSHMSEKPYECNECGKAFRRSSNLIQHQRIHSGEKPYVCS 352

Query: 225 NCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHK 284
            CGK+F+R  +L  H RTH   K F+C  C K F    ++R+H R+H     +EC+DC K
Sbjct: 353 ECGKAFRRSSNLIKHHRTHTGEKPFECGECGKAFSQSAHLRKHQRVHTGEKPYECNDCGK 412

Query: 285 SFTRKDNLERHVKSIHLEDP 304
            F+R  NL +H +    E P
Sbjct: 413 PFSRVSNLIKHHRVHTGEKP 432

May be involved in transcriptional regulation.

Gorilla gorilla gorilla (taxid: 9595)

>sp|Q9Y2H8|ZN510_HUMAN Zinc finger protein 510 OS=Homo sapiens GN=ZNF510 PE=2 SV=1

 Score =  149 bits (376), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 113/219 (51%), Gaps = 1/219 (0%)

Query: 80  YKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
           ++C +C + F  K +   H    + +    C+ C KTFV KS L  H+  H    PYECS
Sbjct: 432 FECSECGKTFSQKSHLSTHQRIHTAEKPYKCNECGKTFVQKSTLRGHQRIHTGEKPYECS 491

Query: 140 NCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICE 199
            C K F  K  L  H +IH+  K  + C  C K      +L+ H + H G K Y C+ CE
Sbjct: 492 ECGKTFVQKSTLRDHHRIHTGEKS-FQCNQCGKTFGQKSNLRIHQRTHTGEKTYQCNECE 550

Query: 200 KSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFF 259
           KSF  K+ LI+HQ TH+ +K F C  CGK+F R   L +H R H   K F+C  C K F 
Sbjct: 551 KSFWRKDHLIQHQKTHTGEKPFKCNECGKTFARTSTLRVHQRIHTGEKPFKCNECGKKFV 610

Query: 260 TLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKS 298
               +  H RIH     F+C+ C K+F +K NL  H ++
Sbjct: 611 RKAILSDHQRIHTGEKPFQCNKCGKTFGQKSNLRIHQRT 649

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q9Y3M9|ZN337_HUMAN Zinc finger protein 337 OS=Homo sapiens GN=ZNF337 PE=2 SV=2

 Score =  148 bits (374), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 140/280 (50%), Gaps = 5/280 (1%)

Query: 28  CRMCLLSDSTQCYLCWQKNEHASF-IIEAPESDK--DEKFTIPDYIQVIPGEPVMYKCLK 84
           C++C    +++ YL   +  H      E  E  +  ++K +   +++   GE   + C +
Sbjct: 266 CKVCGRGYTSKSYLTVHERTHTGEKPYECQECGRRFNDKSSYNKHLKAHSGEKP-FVCKE 324

Query: 85  CKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKG 144
           C R +  K     H    S +    C  C + F NKSHL  H+ +H    P+ C  C + 
Sbjct: 325 CGRGYTNKSYFVVHKRIHSGEKPYRCQECGRGFSNKSHLITHQRTHSGEKPFACRQCKQS 384

Query: 145 FKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIE 204
           F  KG L RH + HS  K  + CK C ++     +L  H + H+G K + C  C + FI+
Sbjct: 385 FSVKGSLLRHQRTHSGEKP-FVCKDCERSFSQKSTLVYHQRTHSGEKPFVCRECGQGFIQ 443

Query: 205 KNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNM 264
           K+ L+KHQ+THS++K FVC++CG+ F +K    LH RTH   K + C+ C + F    + 
Sbjct: 444 KSTLVKHQITHSEEKPFVCKDCGRGFIQKSTFTLHQRTHSEEKPYGCRECGRRFRDKSSY 503

Query: 265 RRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDP 304
            +H+R H     F C DC + FT K NL  H ++   E P
Sbjct: 504 NKHLRAHLGEKRFFCRDCGRGFTLKPNLTIHQRTHSGEKP 543

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|P10073|ZSC22_HUMAN Zinc finger and SCAN domain-containing protein 22 OS=Homo sapiens GN=ZSCAN22 PE=2 SV=2

 Score =  148 bits (373), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 121/247 (48%), Gaps = 10/247 (4%)

Query: 61  DEKFTIPDYIQVIPGEPVMY------KCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICD 114
           ++KF + D     P  P  Y      KC +C++ F+     + H    S K   +C  C 
Sbjct: 245 EDKFDLVDAYGTEP--PYTYSGKRSSKCRECRKMFQSASALEAHQKTHSRKTPYACSECG 302

Query: 115 KTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKAL 174
           K F   +HL  H++ H    P+EC  C K F     L +H +IH+  K  + C  C K  
Sbjct: 303 KAFSRSTHLAQHQVVHTGAKPHECKECGKAFSRVTHLTQHQRIHTGEKP-YKCGECGKTF 361

Query: 175 MSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKY 234
                L +H ++H G + Y CD C K+F +   L +HQ  H+ +K + C+ CG++F    
Sbjct: 362 SRSTHLTQHQRVHTGERPYECDACGKAFSQSTHLTQHQRIHTGEKPYKCDACGRAFSDCS 421

Query: 235 DLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLER 294
            L  H+R H   K +QCK+C K F    ++  H RIH     ++C DC K+F+R   L  
Sbjct: 422 ALIRHLRIHSGEKPYQCKVCPKAFAQSSSLIEHQRIHTGEKPYKCSDCGKAFSRSSALMV 481

Query: 295 HVKSIHL 301
           H++ IH+
Sbjct: 482 HLR-IHI 487

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q03938|ZNF90_HUMAN Zinc finger protein 90 OS=Homo sapiens GN=ZNF90 PE=2 SV=3

 Score =  148 bits (373), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/231 (35%), Positives = 123/231 (53%), Gaps = 2/231 (0%)

Query: 65  TIPDYIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLD 124
           T+  + ++  GE   YKC  C ++ K       H    + +    CD C + F++ S L 
Sbjct: 243 TLTAHKRIHTGEK-RYKCEDCGKELKYSSTLTAHKRIHTGEKPYKCDKCGRAFISSSILY 301

Query: 125 YHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHM 184
            HK+SH +  PY+C  C K FK    L+ H +IH+  K  + C+ C KA      L+ H 
Sbjct: 302 VHKISHTEEKPYKCEECGKAFKLSSILSTHKRIHTGEK-PYKCEECGKAFRRSLVLRTHK 360

Query: 185 KIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHF 244
           +IH G K Y CD C K+FI  + L KH+++HS+KK + CE CGK+FKR   L +H  +H 
Sbjct: 361 RIHTGEKPYKCDKCGKAFISSSLLYKHKISHSEKKPYKCEECGKAFKRSSTLTIHKISHT 420

Query: 245 PLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERH 295
             K ++C+ CDK+F     +  H  IH     ++C +C K+F R  NL  H
Sbjct: 421 EEKPYKCQECDKVFKRSSALSTHKIIHSGEKPYKCEECGKAFKRSSNLTTH 471

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q6P1L6|ZN343_HUMAN Zinc finger protein 343 OS=Homo sapiens GN=ZNF343 PE=2 SV=1

 Score =  147 bits (372), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 116/225 (51%), Gaps = 1/225 (0%)

Query: 80  YKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
           Y C +C R F  K N   H    S +    C  C ++F +KS L+ H+ +H +  PY CS
Sbjct: 297 YVCSECGRGFSQKSNLSRHQRTHSEEKPYLCRECGQSFRSKSILNRHQWTHSEEKPYVCS 356

Query: 140 NCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICE 199
            C +GF  K    RH + HS  K  + C  C ++     +L+KH +IH+G K Y C  C 
Sbjct: 357 ECGRGFSEKSSFIRHQRTHSGEKP-YVCLECGRSFCDKSTLRKHQRIHSGEKPYVCRECG 415

Query: 200 KSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFF 259
           + F + +DLIKHQ TH D+K +VC  CG+ F  K  L +H RTH   K + C  C + F 
Sbjct: 416 RGFSQNSDLIKHQRTHLDEKPYVCRECGRGFCDKSTLIIHERTHSGEKPYVCGECGRGFS 475

Query: 260 TLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDP 304
               +  H R H     + C +C + F++K NL RH ++   E P
Sbjct: 476 RKSLLLVHQRTHSGEKHYVCRECRRGFSQKSNLIRHQRTHSNEKP 520

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|P17020|ZNF16_HUMAN Zinc finger protein 16 OS=Homo sapiens GN=ZNF16 PE=1 SV=3

 Score =  147 bits (370), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/200 (40%), Positives = 106/200 (53%), Gaps = 1/200 (0%)

Query: 105 KAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQ 164
           +A   CD C KTF   S L     SH     Y+CS C K F+     +RH   HS S+  
Sbjct: 234 EASFMCDDCGKTFSQNSVLKNRHRSHMSEKAYQCSECGKAFRGHSDFSRHQSHHS-SERP 292

Query: 165 WFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
           + C  C KA     SLKKH K H   K Y C+ C K+F   ++LI+HQ  HS +K +VC 
Sbjct: 293 YMCNECGKAFSQNSSLKKHQKSHMSEKPYECNECGKAFRRSSNLIQHQRIHSGEKPYVCS 352

Query: 225 NCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHK 284
            CGK+F+R  +L  H RTH   K F+C  C K F    ++R+H R+H     +EC+DC K
Sbjct: 353 ECGKAFRRSSNLIKHHRTHTGEKPFECGECGKAFSQSAHLRKHQRVHTGEKPYECNDCGK 412

Query: 285 SFTRKDNLERHVKSIHLEDP 304
            F+R  NL +H +    E P
Sbjct: 413 PFSRVSNLIKHHRVHTGEKP 432

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q8TF45|ZN418_HUMAN Zinc finger protein 418 OS=Homo sapiens GN=ZNF418 PE=1 SV=2

 Score =  146 bits (369), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/236 (34%), Positives = 120/236 (50%), Gaps = 2/236 (0%)

Query: 71  QVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSH 130
           Q +P     Y C +C + F    +   H    + K    C  C K+F +K  L  H+  H
Sbjct: 222 QRLPSREECY-CWECGKSFSKYDSVSNHQRVHTGKRPYECGECGKSFSHKGSLVQHQRVH 280

Query: 131 QDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGL 190
               PYEC  C K F +KG L +H ++H+  +  + C  C K+     +L KH ++H G 
Sbjct: 281 TGKRPYECGECGKSFSHKGSLVQHQRVHTGERP-YECGECGKSFSQNGTLIKHQRVHTGE 339

Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQ 250
           + Y C+ C K F +K +LI+HQ  H+ ++ + CE CGK F +K  L  H R H   + ++
Sbjct: 340 RPYECEECGKCFTQKGNLIQHQRGHTSERPYECEECGKCFSQKGTLTEHHRVHTRERPYE 399

Query: 251 CKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSE 306
           C  C K F    ++R H R H     +EC +C KSF+RK NL +H +S   E P E
Sbjct: 400 CGECGKSFSRKGHLRNHQRGHTGERPYECGECGKSFSRKGNLIQHQRSHTGERPYE 455

Transcriptional repressor.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	440
270002410	567	hypothetical protein TcasGA2_TC004467 [T	0.731	0.567	0.350	3e-56
380027858	506	PREDICTED: zinc finger protein 83-like [	0.686	0.596	0.354	1e-52
350401845	602	PREDICTED: zinc finger protein 26-like [	0.559	0.408	0.379	7e-43
328777193	518	PREDICTED: zinc finger protein 808-like	0.545	0.463	0.384	9e-43
340718477	602	PREDICTED: zinc finger and BTB domain-co	0.559	0.408	0.379	4e-42
340718479	597	PREDICTED: zinc finger and BTB domain-co	0.559	0.412	0.379	4e-42
383855366	606	PREDICTED: zinc finger protein 792-like	0.568	0.412	0.362	8e-42
332017448	740	Zinc finger protein 28 [Acromyrmex echin	0.547	0.325	0.396	9e-42
334329050	823	PREDICTED: zinc finger protein 850-like	0.575	0.307	0.368	1e-40
390177143	442	GA30120 [Drosophila pseudoobscura pseudo	0.652	0.649	0.351	6e-40

>gi|270002410|gb|EEZ98857.1| hypothetical protein TcasGA2_TC004467 [Tribolium castaneum]

 Score =  225 bits (573), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 130/371 (35%), Positives = 184/371 (49%), Gaps = 49/371 (13%)

Query: 4   CPQCKGLVVCSESRLVQDSCGHIKCRMCLLSDSTQCYLCWQKN---------------EH 48
           CPQCK     + +RLV+DSCGH KCR+CLL D  +C  C  +N                H
Sbjct: 6   CPQCKKASNGAANRLVRDSCGHEKCRVCLLLDEEKCQQCKTENTEVKEQEPPSVIKCESH 65

Query: 49  ASFII------------------------------EAPESDKDEKFTIPDYIQVIPGEPV 78
              I                                 P  +     ++P+++ V+  +P+
Sbjct: 66  TGVITCNGTAKKTPICPIAQNGGVEKKQPTKTSSKNLPNRNLFNDISVPNHVTVL-KDPL 124

Query: 79  MYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYEC 138
            YKC  C ++F  K + KYH +CT  +    C++C + F+ KSHLD H L H    P+ C
Sbjct: 125 QYKCNICNKKFTTKSHIKYHTYCTGQRKPFQCNLCSRDFITKSHLDVHLLKHTGTKPFTC 184

Query: 139 SNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDIC 198
           + C K F  + KLNRH  +HS  K  + C  C KA  S ESLK H  IH G K Y C +C
Sbjct: 185 NICQKSFSERSKLNRHSLLHSTVKP-YMCSECGKAFRSKESLKIHTLIHRGEKPYSCRVC 243

Query: 199 EKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIF 258
             SF   ++L KH +THS++K  +C+ CGK FK K+ L +H R+H   + F+C  C + F
Sbjct: 244 NISFNNTSNLNKHLITHSNEKSHMCDQCGKRFKLKWALTVHRRSHLKDRPFECTSCSRAF 303

Query: 259 FTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSENTNTINGHLAIE 318
               +++RH  IH +   + C  C+ SF RKDNL RHVK+ H    +E   T    L ++
Sbjct: 304 VNNKDLQRHQLIHLETKAYNCSICNTSFRRKDNLYRHVKNTHPGKKAEPVTTTVKQLLVK 363

Query: 319 PKE--DRINGI 327
           P +  D  N I
Sbjct: 364 PNKPVDNPNAI 374

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027858|ref|XP_003697632.1| PREDICTED: zinc finger protein 83-like [Apis florea]

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 123/347 (35%), Positives = 178/347 (51%), Gaps = 45/347 (12%)

Query: 4   CPQCKGLVVCSESRLVQDSCGHIKCRMCLLSDSTQCYLCWQKNEHA-------------- 49
           CP C+ ++  S SRLV+DSCGHIKCRMCL+ +   C +C   NEH+              
Sbjct: 5   CPNCRQIINTSRSRLVKDSCGHIKCRMCLIYEEQGCKICI--NEHSIENYETNNALLNVY 62

Query: 50  -----SFIIEAPESDK---------DEKFTIP-------------DYIQVIPGEPVMYKC 82
                + ++++  ++K           KF+               D+I VIPG P  YKC
Sbjct: 63  PHLSNNVVVKSSSNNKVTEICNVEIKTKFSTKEKLKNKSMKCVDRDHITVIPGIPEKYKC 122

Query: 83  LKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCH 142
             C + F+ K    YH  C +      C  CD++F+ +SH +YH+  H+   PY+C+ C 
Sbjct: 123 NICTKIFQNKKEKCYHDACITGIKPYQCSFCDRSFIKRSHFEYHERIHKGYRPYKCNLCE 182

Query: 143 KGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSF 202
           K F  + KLNRHM  H D  +Q+ C  C+K     + LK H+ IH G   Y C  CEK+F
Sbjct: 183 KAFPQQNKLNRHMYSHGD--KQFMCSKCDKRYSKQDDLKNHLHIHNGTTTYSCKTCEKTF 240

Query: 203 IEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLH 262
               +L +H  TH++++ +VC+ C KSFK K  +  H +TH   + F C  C ++F +  
Sbjct: 241 RILTNLKRHLKTHNNERPYVCDQCNKSFKDKSLVIRHKKTHGKDRPFSCAHCSRVFLSKS 300

Query: 263 NMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSENTN 309
            +RRH+ +H D   F C  C   F RKDNL RH++  H E  S N N
Sbjct: 301 ELRRHLTVHSDEKPFSCKYCETVFRRKDNLHRHIRHHHPESLSFNIN 347

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401845|ref|XP_003486279.1| PREDICTED: zinc finger protein 26-like [Bombus impatiens]

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 94/248 (37%), Positives = 135/248 (54%), Gaps = 2/248 (0%)

Query: 68  DYIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHK 127
           ++I VIPG P  YKC  C + F+ K    YH  C +      C  CD++F+ +SH +YH+
Sbjct: 201 NHITVIPGTPEKYKCNICSKIFRNKKGKCYHDACITGIKPYQCPFCDRSFIKRSHFEYHE 260

Query: 128 LSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIH 187
             H+   PY+C+ C K F  + KLNRHM  H +  +Q+ C  C+K     + LK H+  H
Sbjct: 261 RIHRGYKPYKCNLCDKAFPQQNKLNRHMYSHGE--KQFTCPKCDKRYSKQDDLKNHLDTH 318

Query: 188 AGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLK 247
            G   Y C  CEK+F    +L +H  THS+++ +VC+ C KSFK K  L  H + H   +
Sbjct: 319 NGTSTYSCKACEKTFRMLTNLKRHLKTHSNERPYVCDQCNKSFKDKSLLIRHKKIHGKDR 378

Query: 248 RFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSEN 307
            F C  C ++F +   +RRH+ +H D   F C  C   F RKDNL RH++  H E PS +
Sbjct: 379 PFSCAHCSRVFLSKSELRRHLTVHSDEKPFSCKFCETVFRRKDNLHRHIRHHHPESPSFS 438

Query: 308 TNTINGHL 315
            N I   +
Sbjct: 439 NNKIQSTI 446

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777193|ref|XP_003249298.1| PREDICTED: zinc finger protein 808-like [Apis mellifera]

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 93/242 (38%), Positives = 134/242 (55%), Gaps = 2/242 (0%)

Query: 68  DYIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHK 127
           D+I +IPG P  YKC  C + F+ K    YH  C +      C  CD++F+ +SH +YH+
Sbjct: 192 DHITIIPGIPEKYKCNICSKIFQNKKGKCYHDACITGVKPYQCSFCDRSFIKRSHFEYHE 251

Query: 128 LSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIH 187
             H+   PY+C+ C K F  + KLNRHM  H D  +Q+ C  C+K     + LK H+ +H
Sbjct: 252 RIHKGYRPYKCNLCEKAFPQQNKLNRHMYSHGD--KQFICSKCDKRYSKQDDLKNHLHVH 309

Query: 188 AGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLK 247
            G   Y C  CEK+F    +L +H  TH++++ +VC+ C KSFK K  +  H +TH   +
Sbjct: 310 NGTTTYSCKTCEKTFRMLTNLKRHLKTHNNERPYVCDQCNKSFKDKSLVIRHKKTHGKDR 369

Query: 248 RFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSEN 307
            F C  C ++F +   +RRH+ +H D   F C  C   F RKDNL RH++  H E  S N
Sbjct: 370 PFSCAHCSRVFLSKSELRRHLTVHSDEKPFSCKYCDTVFRRKDNLHRHIRHHHPESLSFN 429

Query: 308 TN 309
            N
Sbjct: 430 IN 431

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718477|ref|XP_003397693.1| PREDICTED: zinc finger and BTB domain-containing protein 24-like isoform 1 [Bombus terrestris]

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 94/248 (37%), Positives = 134/248 (54%), Gaps = 2/248 (0%)

Query: 68  DYIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHK 127
           ++I VIPG P  YKC  C + F+ K    YH  C +      C  CDK+F+ +SH +YH+
Sbjct: 201 NHITVIPGTPEKYKCNICNKIFRNKKGKCYHDACITGVKPYQCSFCDKSFIKRSHFEYHE 260

Query: 128 LSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIH 187
             H+   PY+C+ C K F  + KLNRHM  H +  +Q+ C  C+K     + LK H+  H
Sbjct: 261 RIHRGYKPYKCNLCDKAFPQQNKLNRHMYSHGE--KQFTCPKCDKRYSKQDDLKNHLDAH 318

Query: 188 AGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLK 247
                Y C  CEK+F    +L +H  THS+++ +VC+ C KSFK K  L  H + H   +
Sbjct: 319 NETSTYSCKACEKTFRMLTNLKRHLKTHSNERPYVCDQCNKSFKDKSLLIRHKKIHGKDR 378

Query: 248 RFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSEN 307
            F C  C ++F +   +RRH+ +H D   F C  C   F RKDNL RH++  H E PS +
Sbjct: 379 PFSCAHCSRVFLSKSELRRHLTVHSDEKPFSCKFCETVFRRKDNLHRHIRHHHPESPSFS 438

Query: 308 TNTINGHL 315
            N I   +
Sbjct: 439 NNKIQSTI 446

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718479|ref|XP_003397694.1| PREDICTED: zinc finger and BTB domain-containing protein 24-like isoform 2 [Bombus terrestris]

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 94/248 (37%), Positives = 134/248 (54%), Gaps = 2/248 (0%)

Query: 68  DYIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHK 127
           ++I VIPG P  YKC  C + F+ K    YH  C +      C  CDK+F+ +SH +YH+
Sbjct: 196 NHITVIPGTPEKYKCNICNKIFRNKKGKCYHDACITGVKPYQCSFCDKSFIKRSHFEYHE 255

Query: 128 LSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIH 187
             H+   PY+C+ C K F  + KLNRHM  H +  +Q+ C  C+K     + LK H+  H
Sbjct: 256 RIHRGYKPYKCNLCDKAFPQQNKLNRHMYSHGE--KQFTCPKCDKRYSKQDDLKNHLDAH 313

Query: 188 AGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLK 247
                Y C  CEK+F    +L +H  THS+++ +VC+ C KSFK K  L  H + H   +
Sbjct: 314 NETSTYSCKACEKTFRMLTNLKRHLKTHSNERPYVCDQCNKSFKDKSLLIRHKKIHGKDR 373

Query: 248 RFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSEN 307
            F C  C ++F +   +RRH+ +H D   F C  C   F RKDNL RH++  H E PS +
Sbjct: 374 PFSCAHCSRVFLSKSELRRHLTVHSDEKPFSCKFCETVFRRKDNLHRHIRHHHPESPSFS 433

Query: 308 TNTINGHL 315
            N I   +
Sbjct: 434 NNKIQSTI 441

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855366|ref|XP_003703184.1| PREDICTED: zinc finger protein 792-like [Megachile rotundata]

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 92/254 (36%), Positives = 138/254 (54%), Gaps = 4/254 (1%)

Query: 60  KDEKFTIPD--YIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTF 117
           K +    PD  +I +IPG P  YKC  C + F+ K    YH  C +      C  CD+TF
Sbjct: 174 KSKSIKCPDRTHIILIPGTPEKYKCNICNKIFRNKKGKCYHDACITGIKPYQCSFCDRTF 233

Query: 118 VNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSV 177
           + +SH +YH+  H+   PY+C+ C K F  + KLNRHM  H +  +Q+ C  C K     
Sbjct: 234 IKRSHFEYHERVHRGYKPYKCNLCEKAFPQQNKLNRHMYSHRE--KQFECPKCTKKYSKR 291

Query: 178 ESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLA 237
           + LK H+ +H+    Y C  CEK+F    +L +H  TH++++  +C+ C KSFK K  L 
Sbjct: 292 DDLKNHLAVHSSTSTYSCKTCEKTFRMLTNLKRHLKTHTNERPHICDQCNKSFKDKSLLV 351

Query: 238 LHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVK 297
            H +TH   + F C  C+++F +   ++RH+ +H D   F C  C   F RKDNL RH++
Sbjct: 352 RHKKTHGKDRPFSCAHCNRVFLSKSELKRHLTVHSDEKPFSCKYCQTVFRRKDNLHRHIR 411

Query: 298 SIHLEDPSENTNTI 311
             H E+P  + N +
Sbjct: 412 HHHSENPLVDINNV 425

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017448|gb|EGI58171.1| Zinc finger protein 28 [Acromyrmex echinatior]

 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 96/242 (39%), Positives = 131/242 (54%), Gaps = 1/242 (0%)

Query: 69  YIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKL 128
           +I ++ G P  YKC  C + F+ K    YH  C +      C +CDK+FV +SH +YH+ 
Sbjct: 219 HITILSGTPERYKCNICGKIFRNKKGKCYHDACVTGIKPYQCTLCDKSFVKRSHFEYHER 278

Query: 129 SHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHA 188
            H+   PY+C+ C K F  + KLNRHM  HS  K Q+ C  CNK     + LK H+ IH 
Sbjct: 279 VHKGYKPYKCNLCDKAFPQQNKLNRHMFSHSKEK-QFPCSECNKRYSKKDDLKNHLSIHN 337

Query: 189 GLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKR 248
               Y C  C+KSF    +L +H  TH+ ++   C+ C KSFK K  L  H RTH   + 
Sbjct: 338 STAIYKCKSCDKSFRILTNLKRHMQTHTSERPHRCDQCNKSFKEKSLLIRHKRTHGKERP 397

Query: 249 FQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSENT 308
           F C  C+K+F +   +RRH+ +H D   F C  C   F RKDNL RH++  H ED  E +
Sbjct: 398 FSCAHCNKVFLSKSELRRHLPVHSDEKPFSCEYCQTLFRRKDNLNRHIRHHHTEDNCEMS 457

Query: 309 NT 310
            T
Sbjct: 458 KT 459

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|334329050|ref|XP_001379290.2| PREDICTED: zinc finger protein 850-like [Monodelphis domestica]

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 97/263 (36%), Positives = 139/263 (52%), Gaps = 10/263 (3%)

Query: 80  YKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
           ++C +C + F  + +   H    + +    C  C KTF+ ++HL  H+  H    PYEC 
Sbjct: 544 FECKQCGKSFIQRTHLAAHQRIHTGEKPYECKQCGKTFIQRNHLAVHQKIHTGEKPYECK 603

Query: 140 NCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICE 199
            C K F  +G L +H++IHS  K  + C  C KA     SL KH++IH+G K Y C  C 
Sbjct: 604 QCGKAFIERGSLAKHLRIHSGEKP-YECTQCGKAFTERGSLAKHLRIHSGEKPYECTQCG 662

Query: 200 KSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFF 259
           K+F E+  L KHQ  H+  K + C+ CGK+FKR+  LA+H + H  +K ++CK C K F 
Sbjct: 663 KAFTERGSLAKHQRIHTGDKPYECKQCGKTFKRRSHLAVHQKIHTGVKSYECKQCGKAFT 722

Query: 260 TLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSE-----NTNTINGH 314
              N+ +H RIH     +EC  C K+FT + NL +H +    E P E        T+ G+
Sbjct: 723 VRGNLGKHQRIHTGEKPYECKQCGKTFTDRGNLAKHQRIHTGEKPYECKQCGKAFTVRGN 782

Query: 315 LAIEPKEDRI-NGIEPRESKIIG 336
           LA   K  RI  G +P E K  G
Sbjct: 783 LA---KHQRIHTGEKPYECKQCG 802

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390177143|ref|XP_001357917.2| GA30120 [Drosophila pseudoobscura pseudoobscura] gi|388858921|gb|EAL27053.2| GA30120 [Drosophila pseudoobscura pseudoobscura]

 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 156/304 (51%), Gaps = 17/304 (5%)

Query: 1   MEQCPQCKGLVVCSESRLVQDSCGHIKCRMCLLSDSTQCYLCWQKNEHASFIIEAPESDK 60
           M +CP+C       ++RLV DSCGH KCR+CL++D + C  C  K   +   I   +   
Sbjct: 1   MGKCPRCDCEAT-GQNRLVTDSCGHTKCRLCLVADVSDCLECTNKETVSPKKISNAKRTA 59

Query: 61  DEKFTIPDYIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTS-LKAKLSCDICDKTFVN 119
           D++ TI D           Y C  CK+ F+ +    YH+ C + L  K  C  C++ F  
Sbjct: 60  DKRITITDQ---------GYHCTVCKKDFRSRTQQYYHLTCGNDLLKKFCCKQCNRRFAT 110

Query: 120 KSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVES 179
            SHL YH+ +H  L+ Y CS C K FK    L RHM+IH++  EQ  C  C+K    + +
Sbjct: 111 HSHLKYHQNNHVSLSKYSCSICGKKFKQPNVLQRHMRIHNN--EQHACDHCHKVFRCLST 168

Query: 180 LKKHMKIHA--GLKNYHCDICEKSFIEKNDLIKHQVTH-SDKKIFVCENCGKSFKRKYDL 236
           LK H+  H   G   Y C+ C K F  K +L +H+  H  +     C+ C KSF R+  L
Sbjct: 169 LKDHLVAHTDHGFA-YKCETCAKLFQNKANLNQHRQKHDQNSSRHKCKVCQKSFLRQSTL 227

Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHV 296
            LH++ H   +R  C LC K +     + RH+R HK    + C  C  +  R+DN+ RH+
Sbjct: 228 RLHMKRHALRERQPCPLCGKSYNDADALARHLRQHKTVERYRCTQCDVTVNRRDNMHRHL 287

Query: 297 KSIH 300
           +S+H
Sbjct: 288 RSMH 291

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	440
FB|FBgn0261679	630	CG42726 [Drosophila melanogast	0.659	0.460	0.339	1.4e-48
UNIPROTKB|Q03938	601	ZNF90 "Zinc finger protein 90"	0.622	0.455	0.335	3.2e-42
ZFIN|ZDB-GENE-110914-160	1003	si:dkey-240n22.7 "si:dkey-240n	0.627	0.275	0.340	6.7e-42
UNIPROTKB|H9KZ43	371	H9KZ43 "Uncharacterized protei	0.668	0.792	0.326	8.4e-42
ZFIN|ZDB-GENE-110913-80	421	si:dkey-247i3.4 "si:dkey-247i3	0.520	0.543	0.370	8.4e-42
UNIPROTKB|F1M3H6	467	F1M3H6 "Uncharacterized protei	0.677	0.638	0.314	2.8e-41
UNIPROTKB|B4DP29	458	ZNF559 "cDNA FLJ59365, highly	0.640	0.615	0.339	3.6e-41
UNIPROTKB|Q9BR84	538	ZNF559 "Zinc finger protein 55	0.640	0.524	0.339	3.6e-41
UNIPROTKB|I3LMM2	858	I3LMM2 "Uncharacterized protei	0.665	0.341	0.315	6.5e-41
UNIPROTKB|F1RI76	738	F1RI76 "Uncharacterized protei	0.656	0.391	0.333	7.4e-41

FB|FBgn0261679 CG42726 [Drosophila melanogaster (taxid:7227)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 103/303 (33%), Positives = 154/303 (50%)

Query:     1 MEQCPQCKGLVVCSESRLVQDSCGHIKCRMCLLSDSTQCYLCWQKNEHASFIIEAPESDK 60
             M +CP+C       ++RLV DSCGH KCR+CL++D + C  C       +  ++  E+ +
Sbjct:     1 MNKCPRCN-CDATGQNRLVTDSCGHTKCRLCLVADVSDCLEC-----RVARSVDIQETQE 54

Query:    61 DEKFTIPDYIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHC-TSLKAKLSCDICDKTFVN 119
              +  T  D   ++  +   Y C  C + F+ +    YH+ C   L  K +C  C + F  
Sbjct:    55 TQARTSADKRIIVTDKG--YHCTVCNKDFRSRTQQYYHLTCGNDLLKKFNCKECGRRFAT 112

Query:   120 KSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVES 179
              SHL YH +SH+  + + CS CHK FK    L RHM  H+  K    C +C K      S
Sbjct:   113 SSHLKYHLMSHEKQSKHSCSVCHKSFKQPIVLQRHMLTHNQEKH--LCPICQKVFRRKSS 170

Query:   180 LKKHMKIHAGLK-NYHCDICEKSFIEKNDLIKHQVTHSDKKI-FVCENCGKSFKRKYDLA 237
             L  H+ IH+ L   + C++C K F  K +L +H   H    I  +C+ C KSF R+  L 
Sbjct:   171 LASHLAIHSDLGLQFKCELCSKHFQNKANLNQHLRKHDKNNIRHMCKVCQKSFLRQTTLR 230

Query:   238 LHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVK 297
             LH++ H   +R  C LC K +     + RH+R HK    + C  C  +  RKDN+ RH++
Sbjct:   231 LHMKRHSNRERQSCSLCGKSYNDPDALGRHLRQHKTAERYRCIQCDITINRKDNMLRHLR 290

Query:   298 SIH 300
             S+H
Sbjct:   291 SMH 293

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q03938 ZNF90 "Zinc finger protein 90" [Homo sapiens (taxid:9606)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 94/280 (33%), Positives = 142/280 (50%)

Query:    27 KCRMCLLSDSTQCYLCWQKNEHASFI-IEAPESDKDEKF--TIPDYIQVIPGEPVMYKCL 83
             KC  C  + +   +L   K  H      +  +  K+ K+  T+  + ++  GE   YKC 
Sbjct:   202 KCEECGKAFNRSSHLTSHKRIHTGEKRYKCEDCGKELKYSSTLTAHKRIHTGEK-RYKCE 260

Query:    84 KCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHK 143
              C ++ K       H    + +    CD C + F++ S L  HK+SH +  PY+C  C K
Sbjct:   261 DCGKELKYSSTLTAHKRIHTGEKPYKCDKCGRAFISSSILYVHKISHTEEKPYKCEECGK 320

Query:   144 GFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFI 203
              FK    L+ H +IH+  K  + C+ C KA      L+ H +IH G K Y CD C K+FI
Sbjct:   321 AFKLSSILSTHKRIHTGEKP-YKCEECGKAFRRSLVLRTHKRIHTGEKPYKCDKCGKAFI 379

Query:   204 EKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHN 263
               + L KH+++HS+KK + CE CGK+FKR   L +H  +H   K ++C+ CDK+F     
Sbjct:   380 SSSLLYKHKISHSEKKPYKCEECGKAFKRSSTLTIHKISHTEEKPYKCQECDKVFKRSSA 439

Query:   264 MRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLED 303
             +  H  IH     ++C +C K+F R  NL  H K  H E+
Sbjct:   440 LSTHKIIHSGEKPYKCEECGKAFKRSSNLTTH-KISHTEE 478

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0005794 "Golgi apparatus" evidence=IDA

ZFIN|ZDB-GENE-110914-160 si:dkey-240n22.7 "si:dkey-240n22.7" [Danio rerio (taxid:7955)]

 Score = 454 (164.9 bits), Expect = 6.7e-42, P = 6.7e-42
 Identities = 96/282 (34%), Positives = 142/282 (50%)

Query:    27 KCRMCLLSDSTQCYLCWQKNEHAS---FIIEAPESDKDEKFTIPDYIQVIPGEPVMYKCL 83
             +CR C  S S +  L      H     F  +      + K  +  +I+V  GE   Y+C 
Sbjct:   654 QCRQCGKSFSQKIQLEGHMGVHTGVNPFTCQQCGKSFNRKQNLKVHIRVHTGEKP-YQCQ 712

Query:    84 KCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHK 143
             +C + F  + N   H+   +      C  C K+F +K +L  H   H    PY+C  C +
Sbjct:   713 QCGKSFSQQKNLDSHLVIHTGANPFVCQQCGKSFNHKQNLQVHMRIHTGEKPYQCRQCGR 772

Query:   144 GFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFI 203
              F  K  L  H+ IH+   +   C+ C K+ +  ++LK HM++H G K YHC  C KSF 
Sbjct:   773 SFSQKTHLEAHIGIHTGGDKPNQCQQCGKSFIHKQNLKVHMRVHTGEKPYHCQHCGKSFS 832

Query:   204 EKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHN 263
             ++ +L  H   HS  K F C+ CGKSF  K++L LH+R H   K F+C+ C K F   HN
Sbjct:   833 QQTNLEGHMRIHSGVKPFTCQECGKSFVHKHNLQLHLRVHTGEKPFKCQHCGKGFVHKHN 892

Query:   264 MRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHL-EDP 304
             ++ H+R+H     F+C  C K F+ + NL+ HV+ IH  E P
Sbjct:   893 LQLHLRVHTGEKPFKCQHCGKGFSLQKNLDGHVR-IHTGEKP 933

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|H9KZ43 H9KZ43 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 102/312 (32%), Positives = 151/312 (48%)

Query:     3 QCPQCKGLVVCSESRLVQDSCGH-----IKCRMCLLSDSTQCYL-CWQKNEHASFIIEAP 56
             QC +C G      S L      H      +C  C  S ++  +L C Q+        +  
Sbjct:    66 QCSEC-GKSFSRSSHLTYHQRIHTGERPFQCPECGKSFNSSSHLTCHQRIHKGEKPFQCS 124

Query:    57 ESDKD--EKFTIPDYIQVIPGEPVMYKCLKCKRQFKVKYN--CKYHIHCTSLKAKLSCDI 112
             E  K    KF +  + ++  GE   YKC +C + FK   N  C + IH T  +    C  
Sbjct:   125 ECGKGFKTKFELKLHQRIHTGERP-YKCSECGKGFKSNSNLTCHHRIH-TG-ERPFQCPE 181

Query:   113 CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNK 172
             C K+F   S L  H   H    P++CS C K FK + KL RH +IH+  +  + C  C K
Sbjct:   182 CGKSFKRSSELKQHHRIHTGQRPFQCSECGKSFKRRAKLTRHQRIHTGERP-FKCSECGK 240

Query:   173 ALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKR 232
                    LK H +IH G + Y C  CEKSF   + L  HQ TH++++ + C  CGK FK 
Sbjct:   241 GFKRSCELKLHQRIHTGERPYKCSACEKSFKSNSQLKHHQRTHTEERPYKCSACGKGFKS 300

Query:   233 KYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH-KDRPLFECHDCHKSFTRKDN 291
              Y+L LH R H   + ++C  C+K F +   +++H R H ++RP F+C +C K F+R  +
Sbjct:   301 SYELKLHQRIHTGERPYKCSACEKSFKSNSELKQHQRTHTEERP-FKCSECGKCFSRSSH 359

Query:   292 LERHVKSIHLED 303
             L  H + +H  +
Sbjct:   360 LNFH-RRVHTRE 370

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-110913-80 si:dkey-247i3.4 "si:dkey-247i3.4" [Danio rerio (taxid:7955)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 86/232 (37%), Positives = 124/232 (53%)

Query:    69 YIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKL 128
             ++++  GE   + C +C + F  K N   H+   + +   SC  C K+F  K +LD H  
Sbjct:   157 HMRIHTGEKP-FSCKQCGKSFSQKPNLDIHMRIHNGEKPFSCKQCGKSFCQKPNLDDHMR 215

Query:   129 SHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHA 188
              H    PY C  C K F  K  LN HM+IH+  ++ + C+ C K+     +L  HM+ H 
Sbjct:   216 VHTGEKPYTCEQCGKSFSQKQSLNTHMRIHTGERK-FPCQQCGKSFYHAGNLAAHMRTHT 274

Query:   189 GLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKR 248
             G K + C  C KSF +K +LI H   H+ +K + CE CGKS  +K DL +H+R H   K 
Sbjct:   275 GEKPFSCKQCGKSFSKKPNLIAHMRVHTSEKPYTCEQCGKSLGKKQDLYIHMRIHTGEKP 334

Query:   249 FQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
             F C  C K F T  +++ HM  H    +F C  C KS TRKD +++H+K IH
Sbjct:   335 FTCDQCGKSFSTKASLKNHMNGHTGTIVFTCDQCGKSLTRKDTIKKHMK-IH 385

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1M3H6 F1M3H6 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 99/315 (31%), Positives = 148/315 (46%)

Query:     3 QCPQCKGLVVCSESRLVQDSCGHI-----KCRMCLLSDSTQCYLCWQKNEHASFIIEAPE 57
             +C QC G      S+L +    H      KC  C  + S   +L   K  H     E P 
Sbjct:   131 ECSQC-GKAFTYHSQLRRHKRTHTGEKPYKCNQCGKAFSQNGHLIIHKRTHTG---EKPY 186

Query:    58 --SDKDEKFTIPDYIQVIP----GEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCD 111
               S   + FT    +++      GE   YKC +C + F    N + H    + +    C+
Sbjct:   187 ECSQCGKAFTDQSQLRIHKKAHTGEKP-YKCNQCDKAFLQNINLRIHKRAHTGEKPYKCN 245

Query:   112 ICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCN 171
              CDK F    HL  HK +H    PYEC  C K F ++ +L  H +IH+  K  + C  C+
Sbjct:   246 QCDKAFAQNGHLIIHKRTHTGEKPYECIECGKAFADQSQLRIHRRIHTGEKP-YKCNQCD 304

Query:   172 KALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFK 231
             KA     +L+ H + H G K Y C+ C+K+F++  +L  H+  H+ +K + C  CGK+F 
Sbjct:   305 KAFAQHSNLRIHKRTHTGEKPYECNQCDKAFLQNINLKIHKKAHTGEKTYECNQCGKAFA 364

Query:   232 RKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDN 291
             R Y L  H R H   K ++C  CDK+F   H+++ H R H     + C+ C K+F    +
Sbjct:   365 RYYHLQCHERIHTEEKPYKCNQCDKVFSQSHSLQIHKRTHTGEKPYVCNQCGKAFADNSH 424

Query:   292 LERHVKSIHLEDPSE 306
             L RH ++   E P E
Sbjct:   425 LRRHKRTHTGEKPYE 439

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|B4DP29 ZNF559 "cDNA FLJ59365, highly similar to Zinc finger protein 559" [Homo sapiens (taxid:9606)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 98/289 (33%), Positives = 143/289 (49%)

Query:    20 QDSCGHIKCRMCLLSDSTQCYLCWQKNEHASFI-IEAPESDKDEKFTIPDYIQVIP--GE 76
             QD     +C+ C    +   YL      H+  + IE  +  K   F+ PD  + I     
Sbjct:   155 QDGEKFYECKACGKPFTESSYLTQHLRTHSRVLPIEHKKFGKAFAFS-PDLAKHIRLRTR 213

Query:    77 PVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPY 136
                Y C +C ++F        HI   + +    C+ C K F + S L  H+ +H    PY
Sbjct:   214 GKHYVCNECGKEFTCFSKLNIHIRVHTGEKPYECNKCGKAFTDSSGLIKHRRTHTGEKPY 273

Query:   137 ECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCD 196
             EC  C K F N   L  HM+ H+  K  + CK C KA ++  S K HM+ H G+K Y C 
Sbjct:   274 ECKECGKAFANSSHLTVHMRTHTGEKP-YQCKECGKAFINSSSFKSHMQTHPGVKPYDCQ 332

Query:   197 ICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDK 256
              C K+FI  + LI+H  +HS ++ F CE CGK+F+    L+ H R H   + ++C+ C +
Sbjct:   333 QCGKAFIRSSFLIRHLRSHSAERPFECEECGKAFRYSSHLSQHKRIHTGERPYKCQKCGQ 392

Query:   257 IFFTLHNMRRHMRIHK-DRPLFECHDCHKSFTRKDNLERHVKSIHLEDP 304
              F     +  HMR H  +RP FEC +C K+FTR   L RH++S  +E P
Sbjct:   393 AFSISSGLTVHMRTHTGERP-FECQECGKAFTRSTYLIRHLRSHSVEKP 440

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q9BR84 ZNF559 "Zinc finger protein 559" [Homo sapiens (taxid:9606)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 98/289 (33%), Positives = 143/289 (49%)

Query:    20 QDSCGHIKCRMCLLSDSTQCYLCWQKNEHASFI-IEAPESDKDEKFTIPDYIQVIP--GE 76
             QD     +C+ C    +   YL      H+  + IE  +  K   F+ PD  + I     
Sbjct:   235 QDGEKFYECKACGKPFTESSYLTQHLRTHSRVLPIEHKKFGKAFAFS-PDLAKHIRLRTR 293

Query:    77 PVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPY 136
                Y C +C ++F        HI   + +    C+ C K F + S L  H+ +H    PY
Sbjct:   294 GKHYVCNECGKEFTCFSKLNIHIRVHTGEKPYECNKCGKAFTDSSGLIKHRRTHTGEKPY 353

Query:   137 ECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCD 196
             EC  C K F N   L  HM+ H+  K  + CK C KA ++  S K HM+ H G+K Y C 
Sbjct:   354 ECKECGKAFANSSHLTVHMRTHTGEKP-YQCKECGKAFINSSSFKSHMQTHPGVKPYDCQ 412

Query:   197 ICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDK 256
              C K+FI  + LI+H  +HS ++ F CE CGK+F+    L+ H R H   + ++C+ C +
Sbjct:   413 QCGKAFIRSSFLIRHLRSHSAERPFECEECGKAFRYSSHLSQHKRIHTGERPYKCQKCGQ 472

Query:   257 IFFTLHNMRRHMRIHK-DRPLFECHDCHKSFTRKDNLERHVKSIHLEDP 304
              F     +  HMR H  +RP FEC +C K+FTR   L RH++S  +E P
Sbjct:   473 AFSISSGLTVHMRTHTGERP-FECQECGKAFTRSTYLIRHLRSHSVEKP 520

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|I3LMM2 I3LMM2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 443 (161.0 bits), Expect = 6.5e-41, P = 6.5e-41
 Identities = 97/307 (31%), Positives = 146/307 (47%)

Query:     3 QCPQCKGLVVCSESRLVQDSCGHIK-----CRMCLLSDSTQCYLCWQKNEHASFI-IEAP 56
             QC +C G    +   L+Q    H       C  C  S ++   LC+ +  HA     E  
Sbjct:   496 QCSEC-GKSFNNRCTLIQHQRVHTGEKPYVCSECGKSFTSSSTLCYHQRVHAGKRPYECS 554

Query:    57 ESDKD--EKFTIPDYIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICD 114
             E  K      T+  + +V  GE   Y+C +C + F    + +YH    + +    C  C 
Sbjct:   555 ECGKSFTSSSTLRYHQRVHTGERP-YECSECGKSFTFSASLRYHHRVHTGERPYECSECG 613

Query:   115 KTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKAL 174
             K+F ++S  + H+ +H    PYECS C K F  K  L+ H +IH+  +  + C  C K+ 
Sbjct:   614 KSFKDRSQFNKHRRAHTGERPYECSECGKSFSQKSSLSTHQRIHNKERS-YECSACGKSF 672

Query:   175 MSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKY 234
              S+  L  H ++H G K Y C  C KSF   + LI+H   H+ ++ +VC  CGKSF    
Sbjct:   673 TSISGLGYHQRVHRGEKPYQCSECGKSFTNSSILIRHHRVHTGERPYVCSECGKSFTSSA 732

Query:   235 DLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHK-DRPLFECHDCHKSFTRKDNLE 293
              L+ H R H   + ++C  C K F +   +R H R+H  DRP +EC +C KSF     L 
Sbjct:   733 TLSYHQRVHAGKRPYECSKCGKSFTSSSTLRYHQRVHAGDRP-YECRECGKSFISSSKLR 791

Query:   294 RHVKSIH 300
              H + +H
Sbjct:   792 YHQR-VH 797

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1RI76 F1RI76 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 440 (159.9 bits), Expect = 7.4e-41, P = 7.4e-41
 Identities = 100/300 (33%), Positives = 140/300 (46%)

Query:     4 CPQCKGLVVCSESRLVQDSCGH-----IKCRMCLLSDSTQCYLCWQKNEHASFI-IEAPE 57
             C QC G     +S L+     H       C  C  + S +  L   +  H      E  E
Sbjct:   433 CIQC-GKAFSQKSHLLSHQMTHTGEKPFVCSKCGKAFSRKSQLVRHQRTHTGEKPYECNE 491

Query:    58 SDK--DEKFTIPDYIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDK 115
               K   EK ++ ++ ++  GE   Y C +C + F  K +   H    + +    C  C K
Sbjct:   492 CGKAFSEKLSLTNHQRIHTGEKP-YVCSECGKAFCQKSHLISHQRTHTGEKPYECTECGK 550

Query:   116 TFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALM 175
              F  KS L  H+ +H    PYEC +C K F  K +LN H +IH+  K  + C +C KA  
Sbjct:   551 AFGEKSSLATHQRTHTGEKPYECRDCEKAFSQKSQLNTHQRIHTGEKP-YECGICQKAFF 609

Query:   176 SVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYD 235
                 L +H + H G K Y C  C K+F EK+ LI HQ TH+ +K F C +CGK+F RK  
Sbjct:   610 EKSELIRHQRTHTGEKPYECSECRKAFREKSSLINHQRTHTGEKPFECSDCGKAFSRKSH 669

Query:   236 LALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERH 295
             L  H RTH   K + C  C K F     +  H RIH     ++C +C K+F++K  L  H
Sbjct:   670 LIPHQRTHTGEKPYGCSECRKAFSQKSQLVNHQRIHTGEKPYQCSECEKAFSQKSQLINH 729

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	440
COG5048	467	COG5048, COG5048, FOG: Zn-finger [General function	9e-06
pfam13465	26	pfam13465, zf-H2C2_2, Zinc-finger double domain	0.002

>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction only]

 Score = 47.4 bits (112), Expect = 9e-06
 Identities = 39/206 (18%), Positives = 71/206 (34%), Gaps = 17/206 (8%)

Query: 98  HIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQD-LNPYECSNCHKGFKNKGKLNRHMK 156
               +S        +   +  + S  +    S +    P +   C+  F     L RH++
Sbjct: 251 SDSSSSASESPRSSLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLR 310

Query: 157 IHSDSKE---QWFCKV--CNKALMSVESLKKHMKIHAGLKNYHCDIC-------EKSFIE 204
             + S E    + C    C K     ++LK+H+ +H  +      +             E
Sbjct: 311 SVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNE 370

Query: 205 KNDLIKHQVTHSDKKIFVCE--NCGKSFKRKYDLALHIRTH--FPLKRFQCKLCDKIFFT 260
               ++      + K       +C ++FKR  +L+LHI TH  F     +   C K F  
Sbjct: 371 PPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNR 430

Query: 261 LHNMRRHMRIHKDRPLFECHDCHKSF 286
            +N+  H +IH +     C       
Sbjct: 431 HYNLIPHKKIHTNHAPLLCSILKSFR 456

Length = 467

>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain

 Score = 35.1 bits (81), Expect = 0.002
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 179 SLKKHMKIHAGLKNYHCDICEKSF 202
           +L++HM+ H G K Y C +C KSF
Sbjct: 1   NLRRHMRTHTGEKPYKCPVCGKSF 24

Length = 26

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	440
KOG1074|consensus	958		99.95
KOG2462|consensus	279		99.95
KOG3608|consensus	467		99.95
KOG2462|consensus	279		99.95
KOG1074|consensus	958		99.94
KOG3623|consensus	1007		99.93
KOG3608|consensus	467		99.92
KOG3623|consensus	1007		99.91
KOG3576|consensus	267		99.72
KOG3576|consensus	267		99.65
PLN03086	567	PRLI-interacting factor K; Provisional	99.37
PLN03086	567	PRLI-interacting factor K; Provisional	99.35
PHA00733	128	hypothetical protein	99.15
PHA00733	128	hypothetical protein	99.02
KOG3993|consensus	500		98.97
KOG3993|consensus	500		98.89
PHA02768	55	hypothetical protein; Provisional	98.87
PHA02768	55	hypothetical protein; Provisional	98.74
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.61
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.47
PHA00616	44	hypothetical protein	98.31
PHA00616	44	hypothetical protein	98.23
PHA00732	79	hypothetical protein	98.18
PHA00732	79	hypothetical protein	98.08
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.98
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.82
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.67
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.67
KOG1146|consensus	1406		97.64
COG5236	493	Uncharacterized conserved protein, contains RING Z	97.63
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.58
KOG2231|consensus	669		97.58
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.51
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.35
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.33
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.3
KOG1146|consensus	1406		97.27
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.25
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.12
COG5189	423	SFP1 Putative transcriptional repressor regulating	96.93
KOG2231|consensus	669		96.88
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.55
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.49
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.46
smart00355	26	ZnF_C2H2 zinc finger.	96.44
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.18
PRK04860	160	hypothetical protein; Provisional	96.15
smart00355	26	ZnF_C2H2 zinc finger.	96.1
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.08
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	95.79
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.74
KOG2785|consensus	390		95.6
PRK04860	160	hypothetical protein; Provisional	95.4
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	94.98
COG5048	467	FOG: Zn-finger [General function prediction only]	94.34
COG5048	467	FOG: Zn-finger [General function prediction only]	94.22
KOG2482|consensus	423		94.0
KOG2785|consensus	390		93.69
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	93.61
KOG2482|consensus	423		93.34
KOG2893|consensus	341		93.1
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	92.72
KOG4173|consensus	253		92.17
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	91.77
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	91.63
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	90.9
KOG2893|consensus	341		90.58
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	90.52
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	89.76
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	89.52
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	89.23
COG4049	65	Uncharacterized protein containing archaeal-type C	89.15
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	88.57
KOG4173|consensus	253		88.38
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	83.57
COG4049	65	Uncharacterized protein containing archaeal-type C	83.23
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	83.0
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	81.84
PHA00626	59	hypothetical protein	80.47

>KOG1074|consensus

Probab=99.95  E-value=9.1e-29  Score=240.26  Aligned_cols=171  Identities=27%  Similarity=0.559  Sum_probs=142.0

Q ss_pred             CCeecCccccccCChHHHHHHHHHhcCCCCcccccccccccCCHHHHHHHHHHhcCC----CcccCC---CCCccccCch
Q psy12560        134 NPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGL----KNYHCD---ICEKSFIEKN  206 (440)
Q Consensus       134 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~----~~~~C~---~C~~~f~~~~  206 (440)
                      .|-+|-+|-+....++.|+.|.++|.|+++ |+|.+||+.|.++.+|+.||.+|...    -.+.|+   +|-+.|...-
T Consensus       604 dPNqCiiC~rVlSC~saLqmHyrtHtGERP-FkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V  682 (958)
T KOG1074|consen  604 DPNQCIICLRVLSCPSALQMHYRTHTGERP-FKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAV  682 (958)
T ss_pred             CccceeeeeecccchhhhhhhhhcccCcCc-cccccccchhccccchhhcccccccCccccccccCCchhhhcccccccc
Confidence            346899999999999999999999998877 99999999999999999999887543    347798   8999999999


Q ss_pred             hhhhccccccCc-c------------ccccCccCcccCChHHHHHHHHHhCCC---------------------------
Q psy12560        207 DLIKHQVTHSDK-K------------IFVCENCGKSFKRKYDLALHIRTHFPL---------------------------  246 (440)
Q Consensus       207 ~l~~H~~~h~~~-~------------~~~C~~C~~~f~~~~~l~~H~~~h~~~---------------------------  246 (440)
                      .|..|+++|.+. .            .-+|..|.+.|.....+..++..|.+.                           
T Consensus       683 ~lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~~~tp~~~e~~  762 (958)
T KOG1074|consen  683 TLPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEELDVTPPPPENS  762 (958)
T ss_pred             cccceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCCcccccccccccccccCCCccccc
Confidence            999999988732 1            136888888888777777777655211                           


Q ss_pred             --------------------------------------------------------------------------------
Q psy12560        247 --------------------------------------------------------------------------------  246 (440)
Q Consensus       247 --------------------------------------------------------------------------------  246 (440)
                                                                                                      
T Consensus       763 ~~~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~~~~l~eg~~  842 (958)
T KOG1074|consen  763 CGRELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQETSMLNEGLA  842 (958)
T ss_pred             cccccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhcccccccccccc
Confidence                                                                                            


Q ss_pred             -----------------------------------CccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHH
Q psy12560        247 -----------------------------------KRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDN  291 (440)
Q Consensus       247 -----------------------------------~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~  291 (440)
                                                         ....|.+|++.|...+.|..|+++|+++|||.|.+|++.|..+.+
T Consensus       843 t~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgn  922 (958)
T KOG1074|consen  843 TKTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGN  922 (958)
T ss_pred             cccccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhh
Confidence                                               016799999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCC
Q psy12560        292 LERHVKSIHLEDPS  305 (440)
Q Consensus       292 l~~H~~~~H~~~~~  305 (440)
                      |+.||.+++...+.
T Consensus       923 LKvHMgtH~w~q~~  936 (958)
T KOG1074|consen  923 LKVHMGTHMWVQPP  936 (958)
T ss_pred             hhhhhccccccCCC
Confidence            99999977664443

>KOG2462|consensus

Probab=99.95  E-value=9.2e-29  Score=213.01  Aligned_cols=132  Identities=36%  Similarity=0.648  Sum_probs=98.7

Q ss_pred             ccccccccccCCHHHHHHHHHHhc---CCCcccCCCCCccccCchhhhhccccccCccccccCccCcccCChHHHHHHHH
Q psy12560        165 WFCKVCNKALMSVESLKKHMKIHA---GLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIR  241 (440)
Q Consensus       165 ~~C~~C~~~f~~~~~l~~H~~~h~---~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  241 (440)
                      |+|+.|++.+.+.++|.+|.+.|-   ..+.+.|++|++.|.+...|..|+++|.  -++.|.+||+.|...+.|+-|+|
T Consensus       131 ~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiR  208 (279)
T KOG2462|consen  131 YKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIR  208 (279)
T ss_pred             eeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhcccc
Confidence            445555555555555555544442   2455677777777777777777777776  45788888888888888888888


Q ss_pred             HhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHHHHHHh
Q psy12560        242 THFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKS  298 (440)
Q Consensus       242 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~  298 (440)
                      +|+|||||.|+.|++.|.++++|+.||++|.+.++|+|..|+|+|..++.|.+|..+
T Consensus       209 THTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  209 THTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             cccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence            888888888888888888888888888888888888888888888888888888763

>KOG3608|consensus

Probab=99.95  E-value=8.3e-28  Score=211.81  Aligned_cols=221  Identities=28%  Similarity=0.536  Sum_probs=196.7

Q ss_pred             ceeecc--cchhhccChHHHHHhHhhcCC------------CC-ceec--cccccccCChHHHHHHHHHcCCCCCeecCc
Q psy12560         78 VMYKCL--KCKRQFKVKYNCKYHIHCTSL------------KA-KLSC--DICDKTFVNKSHLDYHKLSHQDLNPYECSN  140 (440)
Q Consensus        78 ~~~~C~--~C~~~f~~~~~l~~H~~~~~~------------~~-~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  140 (440)
                      ..|.|.  .|+..|.+...|..|+..|..            ++ .+.|  ..|-+.|.++..|++|++.|++++...|+.
T Consensus       133 ~~f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~  212 (467)
T KOG3608|consen  133 QNFRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPH  212 (467)
T ss_pred             hhhccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecch
Confidence            468884  799999999999999865542            11 2445  459999999999999999999999999999


Q ss_pred             cccccCChHHHHHHHHHhc-CCCCcccccccccccCCHHHHHHHHHHhcCCCcccCCCCCccccCchhhhhccc-cccCc
Q psy12560        141 CHKGFKNKGKLNRHMKIHS-DSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQV-THSDK  218 (440)
Q Consensus       141 C~~~f~~~~~L~~H~~~h~-~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~  218 (440)
                      ||..|.++..|-.|.+... -....|.|..|.+.|.+...|+.|+..|.  .-|+|+.|+.+....+.|..|++ .|...
T Consensus       213 Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHv--n~ykCplCdmtc~~~ssL~~H~r~rHs~d  290 (467)
T KOG3608|consen  213 CGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHV--NCYKCPLCDMTCSSASSLTTHIRYRHSKD  290 (467)
T ss_pred             HHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhh--hcccccccccCCCChHHHHHHHHhhhccC
Confidence            9999999999999986543 23456999999999999999999999985  47999999999999999999988 57788


Q ss_pred             cccccCccCcccCChHHHHHHHHHhCCCCccccCc--cccccCChHHHHHHHHHhc-CC--CceecCcCccccCChHHHH
Q psy12560        219 KIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIHK-DR--PLFECHDCHKSFTRKDNLE  293 (440)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~H~-~~--~~~~C~~C~~~f~~~~~l~  293 (440)
                      +||+|+.|++.|.+.++|.+|..+|. +..|+|..  |...|.+...|++|++.++ |.  .+|.|..|++.|++..+|.
T Consensus       291 kpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~  369 (467)
T KOG3608|consen  291 KPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLS  369 (467)
T ss_pred             CCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHH
Confidence            99999999999999999999999986 78899988  9999999999999998866 43  4699999999999999999


Q ss_pred             HHHHhhcC
Q psy12560        294 RHVKSIHL  301 (440)
Q Consensus       294 ~H~~~~H~  301 (440)
                      .|++..|+
T Consensus       370 ~HL~kkH~  377 (467)
T KOG3608|consen  370 AHLMKKHG  377 (467)
T ss_pred             HHHHHhhc
Confidence            99999997

>KOG2462|consensus

Probab=99.95  E-value=3.7e-28  Score=209.27  Aligned_cols=136  Identities=34%  Similarity=0.669  Sum_probs=125.3

Q ss_pred             CCCeecCccccccCChHHHHHHHHHhcC--CCCcccccccccccCCHHHHHHHHHHhcCCCcccCCCCCccccCchhhhh
Q psy12560        133 LNPYECSNCHKGFKNKGKLNRHMKIHSD--SKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIK  210 (440)
Q Consensus       133 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~--~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~  210 (440)
                      ...|+|+.|++.+.+.++|.+|.++|..  .+..+.|++|++.|.+...|+.|+++|.  -+++|.+||+.|...+-|..
T Consensus       128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQG  205 (279)
T KOG2462|consen  128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQG  205 (279)
T ss_pred             CCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhc
Confidence            3458999999999999999999999864  3445899999999999999999999996  68899999999999999999


Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHH
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRI  270 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~  270 (440)
                      |+++|+|||||.|+.|++.|.++++|+.||++|.+.|+|+|..|+|+|..++.|.+|...
T Consensus       206 HiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  206 HIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             ccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence            999999999999999999999999999999999999999999999999999999999864

>KOG1074|consensus

Probab=99.94  E-value=7.8e-28  Score=233.79  Aligned_cols=170  Identities=30%  Similarity=0.617  Sum_probs=145.0

Q ss_pred             eeccccccccCChHHHHHHHHHcCCCCCeecCccccccCChHHHHHHHHHhcCC---CCccccc---ccccccCCHHHHH
Q psy12560        108 LSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDS---KEQWFCK---VCNKALMSVESLK  181 (440)
Q Consensus       108 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~---~~~~~C~---~C~~~f~~~~~l~  181 (440)
                      -.|-+|-+.....+.|+.|.++|+|++||+|.+||+.|.++.+|+.||-+|...   +..+.|+   +|.+.|...-.|.
T Consensus       606 NqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~lp  685 (958)
T KOG1074|consen  606 NQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVTLP  685 (958)
T ss_pred             cceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccccccccccc
Confidence            569999999999999999999999999999999999999999999999888542   2348899   9999999999999


Q ss_pred             HHHHHhcCC-Cc------------ccCCCCCccccCchhhhhccccccCcc-----------------------------
Q psy12560        182 KHMKIHAGL-KN------------YHCDICEKSFIEKNDLIKHQVTHSDKK-----------------------------  219 (440)
Q Consensus       182 ~H~~~h~~~-~~------------~~C~~C~~~f~~~~~l~~H~~~h~~~~-----------------------------  219 (440)
                      .|+++|.+. .+            -+|..|.+.|.....+..++..|.+..                             
T Consensus       686 QhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~~~tp~~~e~~~~~  765 (958)
T KOG1074|consen  686 QHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEELDVTPPPPENSCGR  765 (958)
T ss_pred             ceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCCcccccccccccccccCCCcccccccc
Confidence            999998732 11            358888888866666655544331100                             


Q ss_pred             --------------------------------------------------------------------------------
Q psy12560        220 --------------------------------------------------------------------------------  219 (440)
Q Consensus       220 --------------------------------------------------------------------------------  219 (440)
                                                                                                      
T Consensus       766 ~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~~~~l~eg~~t~~  845 (958)
T KOG1074|consen  766 ELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQETSMLNEGLATKT  845 (958)
T ss_pred             ccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhccccccccccccccc
Confidence                                                                                            


Q ss_pred             ---------------------------------ccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHH
Q psy12560        220 ---------------------------------IFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRR  266 (440)
Q Consensus       220 ---------------------------------~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~  266 (440)
                                                       ...|..||+.|...+.|..|+++|+++|+|.|.+|++.|.++.+|+.
T Consensus       846 n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKv  925 (958)
T KOG1074|consen  846 NEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKV  925 (958)
T ss_pred             ccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhh
Confidence                                             26799999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCce
Q psy12560        267 HMRIHKDRPLF  277 (440)
Q Consensus       267 H~~~H~~~~~~  277 (440)
                      ||.+|....++
T Consensus       926 HMgtH~w~q~~  936 (958)
T KOG1074|consen  926 HMGTHMWVQPP  936 (958)
T ss_pred             hhccccccCCC
Confidence            99999876654

>KOG3623|consensus

Probab=99.93  E-value=1.1e-26  Score=221.88  Aligned_cols=78  Identities=29%  Similarity=0.741  Sum_probs=76.3

Q ss_pred             ccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHHHHHH
Q psy12560        220 IFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVK  297 (440)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~  297 (440)
                      +|.|++|++.|...+.|.+|...|+|.+||+|.+|.|.|..+..|..|+|.|.|+|||.|..|+|+|...+++-.||.
T Consensus       894 myaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  894 MYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             cchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhhc
Confidence            599999999999999999999999999999999999999999999999999999999999999999999999999986

>KOG3608|consensus

Probab=99.92  E-value=3.3e-25  Score=195.49  Aligned_cols=229  Identities=24%  Similarity=0.470  Sum_probs=195.0

Q ss_pred             CCcc--hhhhcccCccchhccCCCCCcc-ccCcccceeccCCCC-ceeecc--cchhhccChHHHHHhHhhcCCCCceec
Q psy12560         37 TQCY--LCWQKNEHASFIIEAPESDKDE-KFTIPDYIQVIPGEP-VMYKCL--KCKRQFKVKYNCKYHIHCTSLKAKLSC  110 (440)
Q Consensus        37 ~~C~--~C~~~~~~~~~~~~h~~~~~~~-~~~~~~h~~~~~~~~-~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~C  110 (440)
                      ++|.  .|+..|.+...+..|...+..- ...    +....+++ ..+.|.  .|-+.|.++..|+.|++.|++++...|
T Consensus       135 f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd----~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvAC  210 (467)
T KOG3608|consen  135 FRCGWEDCEREFVSIVEFQDHVVKHALFCEYD----IQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVAC  210 (467)
T ss_pred             hccChhhcCCcccCHHHHHHHHHHhhhhhhhh----hhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEec
Confidence            5554  4888888888888887655532 111    11122222 346785  699999999999999999999999999


Q ss_pred             cccccccCChHHHHHHHHHcC--CCCCeecCccccccCChHHHHHHHHHhcCCCCcccccccccccCCHHHHHHHHH-Hh
Q psy12560        111 DICDKTFVNKSHLDYHKLSHQ--DLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMK-IH  187 (440)
Q Consensus       111 ~~C~~~f~~~~~l~~H~~~h~--~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h  187 (440)
                      +.||.-|.+...|-.|++..+  ...+|.|..|.+.|.+...|..|+..|-.-   |+|+.|+.+....+.|..|++ .|
T Consensus       211 p~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~---ykCplCdmtc~~~ssL~~H~r~rH  287 (467)
T KOG3608|consen  211 PHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNC---YKCPLCDMTCSSASSLTTHIRYRH  287 (467)
T ss_pred             chHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhc---ccccccccCCCChHHHHHHHHhhh
Confidence            999999999999999987654  456899999999999999999999998543   999999999999999999998 57


Q ss_pred             cCCCcccCCCCCccccCchhhhhccccccCccccccCc--cCcccCChHHHHHHHHHhC-C--CCccccCccccccCChH
Q psy12560        188 AGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN--CGKSFKRKYDLALHIRTHF-P--LKRFQCKLCDKIFFTLH  262 (440)
Q Consensus       188 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~-~--~~~~~C~~C~~~f~~~~  262 (440)
                      ...+||+|+.|++.|.+.++|.+|...|+ +..|.|+.  |..+|++...|.+|++.++ |  .-+|.|-.|++.|++-.
T Consensus       288 s~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~  366 (467)
T KOG3608|consen  288 SKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGK  366 (467)
T ss_pred             ccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccch
Confidence            78899999999999999999999999998 67899987  9999999999999999776 4  45699999999999999


Q ss_pred             HHHHHHHHhcC
Q psy12560        263 NMRRHMRIHKD  273 (440)
Q Consensus       263 ~L~~H~~~H~~  273 (440)
                      +|..|++.-++
T Consensus       367 ~L~~HL~kkH~  377 (467)
T KOG3608|consen  367 SLSAHLMKKHG  377 (467)
T ss_pred             hHHHHHHHhhc
Confidence            99999877554

>KOG3623|consensus

Probab=99.91  E-value=1.3e-25  Score=214.64  Aligned_cols=78  Identities=37%  Similarity=0.669  Sum_probs=76.4

Q ss_pred             cccCCCCCccccCchhhhhccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHH
Q psy12560        192 NYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMR  269 (440)
Q Consensus       192 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~  269 (440)
                      .|.|+.|++.|...+.|.+|...|+|.+||+|.+|.+.|+.+..|..|+|.|.|+|||+|+.|+|+|.....+.+||.
T Consensus       894 myaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  894 MYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             cchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhhc
Confidence            499999999999999999999999999999999999999999999999999999999999999999999999999986

>KOG3576|consensus

Probab=99.72  E-value=2.3e-18  Score=141.03  Aligned_cols=111  Identities=32%  Similarity=0.635  Sum_probs=73.3

Q ss_pred             CcccCCCCCccccCchhhhhccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHH
Q psy12560        191 KNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRI  270 (440)
Q Consensus       191 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~  270 (440)
                      ..|.|.+|++.|....-|.+|++-|...+.|.|..||+.|.+..+|.+|+++|+|.+||+|..|++.|+..-.|..|++.
T Consensus       116 d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~k  195 (267)
T KOG3576|consen  116 DSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKK  195 (267)
T ss_pred             CeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHH
Confidence            34555556666655555666666665556666666666666666666666666666666666666666666666666554


Q ss_pred             hcC-----------CCceecCcCccccCChHHHHHHHHhhcC
Q psy12560        271 HKD-----------RPLFECHDCHKSFTRKDNLERHVKSIHL  301 (440)
Q Consensus       271 H~~-----------~~~~~C~~C~~~f~~~~~l~~H~~~~H~  301 (440)
                      -+|           .+.|.|+.||.+-.....+..|++.+|.
T Consensus       196 vhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp  237 (267)
T KOG3576|consen  196 VHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHP  237 (267)
T ss_pred             HcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence            322           4668899999888888888888887775

>KOG3576|consensus

Probab=99.65  E-value=4e-17  Score=133.78  Aligned_cols=113  Identities=26%  Similarity=0.520  Sum_probs=98.0

Q ss_pred             cccccccccccCCHHHHHHHHHHhcCCCcccCCCCCccccCchhhhhccccccCccccccCccCcccCChHHHHHHHHHh
Q psy12560        164 QWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH  243 (440)
Q Consensus       164 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  243 (440)
                      .|.|.+|++.|.....|.+|++-|...+.|.|..||+.|...-+|++|+++|+|.+||+|..|++.|...-.|..|.+.-
T Consensus       117 ~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kv  196 (267)
T KOG3576|consen  117 SFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKV  196 (267)
T ss_pred             eeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHH
Confidence            48888888888888888889888888888899999999999999999999999999999999999999998999888754


Q ss_pred             CC-----------CCccccCccccccCChHHHHHHHHHhcCCCc
Q psy12560        244 FP-----------LKRFQCKLCDKIFFTLHNMRRHMRIHKDRPL  276 (440)
Q Consensus       244 ~~-----------~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~  276 (440)
                      +|           .+.|.|..||.+-.....+..|+..|+...+
T Consensus       197 hgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Sp  240 (267)
T KOG3576|consen  197 HGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSP  240 (267)
T ss_pred             cCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCH
Confidence            44           4569999999999999999999999886544

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.37  E-value=1e-12  Score=128.35  Aligned_cols=147  Identities=24%  Similarity=0.526  Sum_probs=106.9

Q ss_pred             CeecCccccccCChHHHHHHHHHhcCCCCcccccc--cccccCCHHHHHHHHHHhcCCCcccCCCCCccccCchhhhhcc
Q psy12560        135 PYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKV--CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQ  212 (440)
Q Consensus       135 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  212 (440)
                      .-.|+.|..... ...|..|.....-.  .-.|+.  |+..|.. ..+..         .+.|+.|++.|. ...|..|+
T Consensus       407 ~V~C~NC~~~i~-l~~l~lHe~~C~r~--~V~Cp~~~Cg~v~~r-~el~~---------H~~C~~Cgk~f~-~s~LekH~  472 (567)
T PLN03086        407 TVECRNCKHYIP-SRSIALHEAYCSRH--NVVCPHDGCGIVLRV-EEAKN---------HVHCEKCGQAFQ-QGEMEKHM  472 (567)
T ss_pred             eEECCCCCCccc-hhHHHHHHhhCCCc--ceeCCcccccceeec-ccccc---------CccCCCCCCccc-hHHHHHHH
Confidence            346888876543 45666777554322  146774  8877732 22233         357888888885 57788888


Q ss_pred             ccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccC----------ChHHHHHHHHHhcCCCceecCcC
Q psy12560        213 VTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFF----------TLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       213 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~----------~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      ..++  +++.|+ ||+.+ ....|..|+.+|.+.+++.|.+|++.|.          ....|..|...+ |.+++.|..|
T Consensus       473 ~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~C  547 (567)
T PLN03086        473 KVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSC  547 (567)
T ss_pred             HhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEcccc
Confidence            8875  678898 98655 6688888988888889999999998884          245788998886 8888999999


Q ss_pred             ccccCChHHHHHHHHhhcC
Q psy12560        283 HKSFTRKDNLERHVKSIHL  301 (440)
Q Consensus       283 ~~~f~~~~~l~~H~~~~H~  301 (440)
                      |+.+..+ .|..|+...|.
T Consensus       548 gk~Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        548 GRSVMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             CCeeeeh-hHHHHHHHhhc
Confidence            9888654 67888887774

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.35  E-value=2.5e-12  Score=125.59  Aligned_cols=146  Identities=20%  Similarity=0.461  Sum_probs=109.3

Q ss_pred             CceeccccccccCChHHHHHHHHHcCCCCCeecCc--cccccCChHHHHHHHHHhcCCCCcccccccccccCCHHHHHHH
Q psy12560        106 AKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSN--CHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKH  183 (440)
Q Consensus       106 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H  183 (440)
                      ....|+.|.+...... |..|..... .....|+.  |+..|. +..+..|          +.|+.|++.|. ...|..|
T Consensus       406 ~~V~C~NC~~~i~l~~-l~lHe~~C~-r~~V~Cp~~~Cg~v~~-r~el~~H----------~~C~~Cgk~f~-~s~LekH  471 (567)
T PLN03086        406 DTVECRNCKHYIPSRS-IALHEAYCS-RHNVVCPHDGCGIVLR-VEEAKNH----------VHCEKCGQAFQ-QGEMEKH  471 (567)
T ss_pred             CeEECCCCCCccchhH-HHHHHhhCC-CcceeCCcccccceee-ccccccC----------ccCCCCCCccc-hHHHHHH
Confidence            3457888888665544 678875443 24456874  888873 3333333          68999988885 5778999


Q ss_pred             HHHhcCCCcccCCCCCccccCchhhhhccccccCccccccCccCcccC----------ChHHHHHHHHHhCCCCccccCc
Q psy12560        184 MKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFK----------RKYDLALHIRTHFPLKRFQCKL  253 (440)
Q Consensus       184 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~----------~~~~l~~H~~~h~~~~~~~C~~  253 (440)
                      ++.++  +++.|+ ||+.+ .+..|..|+.+|.+.+++.|+.|++.|.          ....|..|..++ |.+++.|..
T Consensus       472 ~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~  546 (567)
T PLN03086        472 MKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDS  546 (567)
T ss_pred             HHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEccc
Confidence            88875  788998 98655 6688999998899999999999998884          245788998886 889999999


Q ss_pred             cccccCChHHHHHHHHHh
Q psy12560        254 CDKIFFTLHNMRRHMRIH  271 (440)
Q Consensus       254 C~~~f~~~~~L~~H~~~H  271 (440)
                      ||+.|..+ .|..|+..-
T Consensus       547 Cgk~Vrlr-dm~~H~~~~  563 (567)
T PLN03086        547 CGRSVMLK-EMDIHQIAV  563 (567)
T ss_pred             cCCeeeeh-hHHHHHHHh
Confidence            99888765 677887653

>PHA00733 hypothetical protein

Probab=99.15  E-value=3.5e-11  Score=96.04  Aligned_cols=94  Identities=19%  Similarity=0.268  Sum_probs=68.9

Q ss_pred             hhhhhccccccCccccccCccCcccCChHHHHHH--HH---HhCCCCccccCccccccCChHHHHHHHHHhcCCCceecC
Q psy12560        206 NDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALH--IR---THFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECH  280 (440)
Q Consensus       206 ~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H--~~---~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  280 (440)
                      ..|.++-..-...+++.|.+|...|.....|..|  ++   .+++.++|.|+.|++.|.+...|..|++.|  ..+|.|.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~  103 (128)
T PHA00733         26 EELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCP  103 (128)
T ss_pred             HHhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCC
Confidence            3344333333345667777777777766665555  21   234578899999999999999999999876  3568999


Q ss_pred             cCccccCChHHHHHHHHhhcC
Q psy12560        281 DCHKSFTRKDNLERHVKSIHL  301 (440)
Q Consensus       281 ~C~~~f~~~~~l~~H~~~~H~  301 (440)
                      .|++.|.....|..|+...|.
T Consensus       104 ~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733        104 VCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCCCccCCHHHHHHHHHHhcC
Confidence            999999999999999987774

>PHA00733 hypothetical protein

Probab=99.02  E-value=2.8e-10  Score=90.90  Aligned_cols=81  Identities=19%  Similarity=0.252  Sum_probs=54.6

Q ss_pred             CCcccCCCCCccccCchhhhhc------cccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHH
Q psy12560        190 LKNYHCDICEKSFIEKNDLIKH------QVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHN  263 (440)
Q Consensus       190 ~~~~~C~~C~~~f~~~~~l~~H------~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~  263 (440)
                      .+++.|.+|...|.....|..+      +. +.+.++|.|+.|++.|.+...|..|++.|  +.+|.|..|++.|.....
T Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~s  114 (128)
T PHA00733         38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLT-SKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDS  114 (128)
T ss_pred             hhhHHHHHHhhhccChhhhcchHHHHhhcc-cCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHH
Confidence            3445555555555544444333      22 33467788888888888888888888765  346888888888888888


Q ss_pred             HHHHHHHhcC
Q psy12560        264 MRRHMRIHKD  273 (440)
Q Consensus       264 L~~H~~~H~~  273 (440)
                      |..|+...++
T Consensus       115 L~~H~~~~h~  124 (128)
T PHA00733        115 TLDHVCKKHN  124 (128)
T ss_pred             HHHHHHHhcC
Confidence            8888877654

>KOG3993|consensus

Probab=98.97  E-value=1.4e-10  Score=106.13  Aligned_cols=53  Identities=17%  Similarity=0.137  Sum_probs=35.5

Q ss_pred             cccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHHHHHHhhcC
Q psy12560        249 FQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHL  301 (440)
Q Consensus       249 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  301 (440)
                      ..|++|+-.+.++..--.|.+.-..+..|.|.+|...|.+...|.+|+...|.
T Consensus       431 ~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hp  483 (500)
T KOG3993|consen  431 ELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHP  483 (500)
T ss_pred             cCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcCh
Confidence            35666766666655444444443444557888888888888888888877775

>KOG3993|consensus

Probab=98.89  E-value=4.2e-10  Score=103.03  Aligned_cols=194  Identities=15%  Similarity=0.234  Sum_probs=114.1

Q ss_pred             eeecccchhhccChHHHHHhHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCeec-C--ccccccCChHHHHHHH
Q psy12560         79 MYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYEC-S--NCHKGFKNKGKLNRHM  155 (440)
Q Consensus        79 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C-~--~C~~~f~~~~~L~~H~  155 (440)
                      .|.|..|...|.+...|..|.=..-..-.|+|+.|+|.|....+|..|.+-|.....-.= .  -=.+.-.+....+.-.
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~  346 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAE  346 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhcc
Confidence            589999999999999999885222222468899999999999999999887753211000 0  0000000000000000


Q ss_pred             HHhc-CCCCcccccccccccCCHHHHHHHHHHhcCCC-----------------cccCCCCCccccCchhhhhccccccC
Q psy12560        156 KIHS-DSKEQWFCKVCNKALMSVESLKKHMKIHAGLK-----------------NYHCDICEKSFIEKNDLIKHQVTHSD  217 (440)
Q Consensus       156 ~~h~-~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-----------------~~~C~~C~~~f~~~~~l~~H~~~h~~  217 (440)
                      +.-. .....|.|.+|++.|.....|++|+.+|+...                 .+-|..|+-.+.....-..+...+.+
T Consensus       347 rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~  426 (500)
T KOG3993|consen  347 RSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAG  426 (500)
T ss_pred             ccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeec
Confidence            0000 11123788888888888888888877664311                 13355565555544433333333332


Q ss_pred             c-cccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhc
Q psy12560        218 K-KIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHK  272 (440)
Q Consensus       218 ~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~  272 (440)
                      . ....|+.|+..+.++..--.+.+.-..+.-|.|.+|...|.+...|.+|+...+
T Consensus       427 sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~H  482 (500)
T KOG3993|consen  427 SAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCH  482 (500)
T ss_pred             cccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcC
Confidence            1 224577777777666554455544445566888899988888888888876633

>PHA02768 hypothetical protein; Provisional

Probab=98.87  E-value=9.5e-10  Score=71.78  Aligned_cols=42  Identities=21%  Similarity=0.621  Sum_probs=30.5

Q ss_pred             cccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHH
Q psy12560        249 FQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNL  292 (440)
Q Consensus       249 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l  292 (440)
                      |.|+.||+.|...+.|..|+++|+  ++|+|..|++.|.+.+.|
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            677777777777777777777776  567777777777766555

>PHA02768 hypothetical protein; Provisional

Probab=98.74  E-value=5e-09  Score=68.44  Aligned_cols=43  Identities=19%  Similarity=0.494  Sum_probs=36.4

Q ss_pred             ccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHH
Q psy12560        220 IFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNM  264 (440)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L  264 (440)
                      .|.|+.||+.|...+.|..|+++|+  ++|+|..|++.|...+.|
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            3789999999999999999999987  688999999988876655

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.61  E-value=3.1e-08  Score=55.21  Aligned_cols=25  Identities=48%  Similarity=0.959  Sum_probs=17.2

Q ss_pred             HHHHHHHHhcCCCceecCcCccccC
Q psy12560        263 NMRRHMRIHKDRPLFECHDCHKSFT  287 (440)
Q Consensus       263 ~L~~H~~~H~~~~~~~C~~C~~~f~  287 (440)
                      +|.+|+++|++++||.|+.|+++|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            3666777777777777777777665

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.47  E-value=1.1e-07  Score=52.98  Aligned_cols=26  Identities=38%  Similarity=0.718  Sum_probs=20.9

Q ss_pred             HHHHHHHHhCCCCccccCccccccCC
Q psy12560        235 DLALHIRTHFPLKRFQCKLCDKIFFT  260 (440)
Q Consensus       235 ~l~~H~~~h~~~~~~~C~~C~~~f~~  260 (440)
                      +|..|+++|++++||.|++|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            47788888888888888888888863

...

>PHA00616 hypothetical protein

Probab=98.31  E-value=3e-07  Score=57.09  Aligned_cols=31  Identities=19%  Similarity=0.380  Sum_probs=13.3

Q ss_pred             cccCccccccCChHHHHHHHHHhcCCCceec
Q psy12560        249 FQCKLCDKIFFTLHNMRRHMRIHKDRPLFEC  279 (440)
Q Consensus       249 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C  279 (440)
                      |+|+.||+.|..++.|..|++.|+|++++.|
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~   32 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKLTL   32 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHHhcCCCccce
Confidence            3444444444444444444444444444433

>PHA00616 hypothetical protein

Probab=98.23  E-value=5.3e-07  Score=55.98  Aligned_cols=39  Identities=18%  Similarity=0.465  Sum_probs=31.4

Q ss_pred             ccccCccCcccCChHHHHHHHHHhCCCCccccCcccccc
Q psy12560        220 IFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIF  258 (440)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f  258 (440)
                      ||+|+.||+.|...+.|..|++.|++++++.|+.=-..|
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~~y~~f   39 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEYFYIYF   39 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeEEEEEE
Confidence            588888999999999999999888888888887644333

>PHA00732 hypothetical protein

Probab=98.18  E-value=1.1e-06  Score=63.51  Aligned_cols=43  Identities=33%  Similarity=0.704  Sum_probs=20.6

Q ss_pred             cccCccccccCChHHHHHHHHH-hcCCCceecCcCccccCChHHHHHHHH
Q psy12560        249 FQCKLCDKIFFTLHNMRRHMRI-HKDRPLFECHDCHKSFTRKDNLERHVK  297 (440)
Q Consensus       249 ~~C~~C~~~f~~~~~L~~H~~~-H~~~~~~~C~~C~~~f~~~~~l~~H~~  297 (440)
                      |.|..|++.|.+...|+.|++. |.+   +.|+.||+.|.   .|..|++
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~---~l~~H~~   45 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHTL---TKCPVCNKSYR---RLNQHFY   45 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccCC---CccCCCCCEeC---Chhhhhc
Confidence            4455555555555555555542 322   34555555554   2444443

>PHA00732 hypothetical protein

Probab=98.08  E-value=2.5e-06  Score=61.60  Aligned_cols=48  Identities=27%  Similarity=0.597  Sum_probs=33.4

Q ss_pred             ccccCccCcccCChHHHHHHHHH-hCCCCccccCccccccCChHHHHHHHHHhcC
Q psy12560        220 IFVCENCGKSFKRKYDLALHIRT-HFPLKRFQCKLCDKIFFTLHNMRRHMRIHKD  273 (440)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  273 (440)
                      ||.|+.|++.|.+...|..|++. |.   ++.|+.|++.|.   .|..|++++.+
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~~~~   49 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYSQYD   49 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---ChhhhhcccCC
Confidence            46777788888777778888774 44   257888888776   46777755543

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.98  E-value=1.1e-05  Score=54.03  Aligned_cols=49  Identities=35%  Similarity=0.618  Sum_probs=29.0

Q ss_pred             cccCccccccCChHHHHHHHHH-hcCC-CceecCcCccccCChHHHHHHHHhhc
Q psy12560        249 FQCKLCDKIFFTLHNMRRHMRI-HKDR-PLFECHDCHKSFTRKDNLERHVKSIH  300 (440)
Q Consensus       249 ~~C~~C~~~f~~~~~L~~H~~~-H~~~-~~~~C~~C~~~f~~~~~l~~H~~~~H  300 (440)
                      |.|++|++ ..+...|..|... |..+ +.+.|++|...+.  .+|..|+...|
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            66666766 3445566666554 3332 3466777766544  36777776655

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.82  E-value=3.8e-05  Score=51.44  Aligned_cols=50  Identities=26%  Similarity=0.487  Sum_probs=35.2

Q ss_pred             ccccCccCcccCChHHHHHHHHHhCC--CCccccCccccccCChHHHHHHHHHhc
Q psy12560        220 IFVCENCGKSFKRKYDLALHIRTHFP--LKRFQCKLCDKIFFTLHNMRRHMRIHK  272 (440)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~L~~H~~~H~  272 (440)
                      .|.|++|++ ..+...|..|....+.  .+.+.|++|...+.  .+|..|+..++
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            378888888 4556778888775443  24688888887655  37888887765

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.67  E-value=2.9e-05  Score=41.86  Aligned_cols=21  Identities=48%  Similarity=1.021  Sum_probs=11.7

Q ss_pred             eecCcCccccCChHHHHHHHH
Q psy12560        277 FECHDCHKSFTRKDNLERHVK  297 (440)
Q Consensus       277 ~~C~~C~~~f~~~~~l~~H~~  297 (440)
                      |.|++|++.|.++..|..|++
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~   21 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMR   21 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHh
Confidence            455555555555555555555

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.67  E-value=2.9e-05  Score=41.86  Aligned_cols=23  Identities=43%  Similarity=1.003  Sum_probs=21.7

Q ss_pred             cccCccccccCChHHHHHHHHHh
Q psy12560        249 FQCKLCDKIFFTLHNMRRHMRIH  271 (440)
Q Consensus       249 ~~C~~C~~~f~~~~~L~~H~~~H  271 (440)
                      |.|+.|++.|.+...|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            78999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>KOG1146|consensus

Probab=97.64  E-value=4.3e-05  Score=80.62  Aligned_cols=145  Identities=18%  Similarity=0.274  Sum_probs=87.0

Q ss_pred             cceeccCCCCceeecccchhhccChHHHHHhHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCeecCccccccCC
Q psy12560         68 DYIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKN  147 (440)
Q Consensus        68 ~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~  147 (440)
                      .++.......+.|+|+.|++.|+....|..||+..+.+..-  .+|... .....+.+-...-.+.++|.|..|...+.+
T Consensus       454 ~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~--~~c~~g-q~~~~~arg~~~~~~~~p~~C~~C~~sttt  530 (1406)
T KOG1146|consen  454 GQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQS--AYCKAG-QNHPRLARGEVYRCPGKPYPCRACNYSTTT  530 (1406)
T ss_pred             cceeeeecccccccCCccchhhhhHHHhhhcccccccccch--hHhHhc-cccccccccccccCCCCcccceeeeeeeec
Confidence            33333333337899999999999999999999874433221  222111 111111111111223466777777777777


Q ss_pred             hHHHHHHHHHh------------------------------------------cCCCCcccccccccccCCHHHHHHHHH
Q psy12560        148 KGKLNRHMKIH------------------------------------------SDSKEQWFCKVCNKALMSVESLKKHMK  185 (440)
Q Consensus       148 ~~~L~~H~~~h------------------------------------------~~~~~~~~C~~C~~~f~~~~~l~~H~~  185 (440)
                      +.+|.+|++.-                                          ...++.|.|..|++...-..+|+.|+.
T Consensus       531 ng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~yetniarnlrihmt  610 (1406)
T KOG1146|consen  531 NGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMT  610 (1406)
T ss_pred             chHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcchhhhhhccccccc
Confidence            77777776532                                          112345889999999888888999987


Q ss_pred             HhcCCCc-ccCCCCCccccCchhhhhccccc
Q psy12560        186 IHAGLKN-YHCDICEKSFIEKNDLIKHQVTH  215 (440)
Q Consensus       186 ~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h  215 (440)
                      .-....+ ..+-.++..+.....+..+.+.+
T Consensus       611 ss~~s~~p~~~Lq~~it~~l~~~~~~~~~lp  641 (1406)
T KOG1146|consen  611 ASPSSSPPSLVLQQNITSSLASLLGGQGRLP  641 (1406)
T ss_pred             cCCCCCChHHHhhhcchhhccccccCcCCCC
Confidence            5433333 56666666666555555554443

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.63  E-value=0.00033  Score=63.27  Aligned_cols=91  Identities=23%  Similarity=0.459  Sum_probs=66.8

Q ss_pred             cCchhhhhccccccCcccc----ccCccCcccCChHHHHHHHHHhCCCCccccCcccc-------ccCChHHHHHHHHHh
Q psy12560        203 IEKNDLIKHQVTHSDKKIF----VCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDK-------IFFTLHNMRRHMRIH  271 (440)
Q Consensus       203 ~~~~~l~~H~~~h~~~~~~----~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~-------~f~~~~~L~~H~~~H  271 (440)
                      -+...|+.|...-..+..|    .|..|...|.+...|..|++..|    -.|-+|++       .|.+...|..|.+.-
T Consensus       199 F~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~FYdDDEL~~HcR~~H----E~ChICD~v~p~~~QYFK~Y~~Le~HF~~~  274 (493)
T COG5236         199 FRSSTLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRH----EACHICDMVGPIRYQYFKSYEDLEAHFRNA  274 (493)
T ss_pred             eecccccccccCCccccCcCCCchhhhccceecChHHHHHHHHhhh----hhhhhhhccCccchhhhhCHHHHHHHhhcC
Confidence            3456677776543333222    69999999999999999998754    35777764       588888999988753


Q ss_pred             cCCCceecCc--Cc----cccCChHHHHHHHHhhcC
Q psy12560        272 KDRPLFECHD--CH----KSFTRKDNLERHVKSIHL  301 (440)
Q Consensus       272 ~~~~~~~C~~--C~----~~f~~~~~l~~H~~~~H~  301 (440)
                      +    |.|..  |-    ..|.....|..|+...|+
T Consensus       275 h----y~ct~qtc~~~k~~vf~~~~el~~h~~~~h~  306 (493)
T COG5236         275 H----YCCTFQTCRVGKCYVFPYHTELLEHLTRFHK  306 (493)
T ss_pred             c----eEEEEEEEecCcEEEeccHHHHHHHHHHHhh
Confidence            3    77754  42    679999999999988887

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.58  E-value=6.3e-05  Score=40.90  Aligned_cols=24  Identities=42%  Similarity=0.881  Sum_probs=14.4

Q ss_pred             eecCcCccccCChHHHHHHHHhhc
Q psy12560        277 FECHDCHKSFTRKDNLERHVKSIH  300 (440)
Q Consensus       277 ~~C~~C~~~f~~~~~l~~H~~~~H  300 (440)
                      |.|++|++.|.+...|..|++.+|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            566667777777777766666554

...

>KOG2231|consensus

Probab=97.58  E-value=0.00014  Score=72.78  Aligned_cols=121  Identities=27%  Similarity=0.595  Sum_probs=72.2

Q ss_pred             eeccccccccCChHHHHHHHHHcCCCCCeecCccccccCChHHHHHHHHHhcCCCCcccccccc---------cccCCHH
Q psy12560        108 LSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCN---------KALMSVE  178 (440)
Q Consensus       108 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~C~---------~~f~~~~  178 (440)
                      +.|.+|+..|.-..            ..-.|..| -.|.+...|+.|+..-|+.   +.|.+|-         ....+..
T Consensus       100 ~~C~~C~~~~~~~~------------~~~~~~~c-~~~~s~~~Lk~H~~~~H~~---~~c~lC~~~~kif~~e~k~Yt~~  163 (669)
T KOG2231|consen  100 HSCHICDRRFRALY------------NKKECLHC-TEFKSVENLKNHMRDQHKL---HLCSLCLQNLKIFINERKLYTRA  163 (669)
T ss_pred             hhcCccccchhhhc------------ccCCCccc-cchhHHHHHHHHHHHhhhh---hccccccccceeeeeeeehehHH
Confidence            67888887764322            11247777 6777888888888554443   5565552         2233456


Q ss_pred             HHHHHHHHhcC-CC----cccCCCCCccccCchhhhhccccccCccccccCccC------cccCChHHHHHHHHHhCCCC
Q psy12560        179 SLKKHMKIHAG-LK----NYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG------KSFKRKYDLALHIRTHFPLK  247 (440)
Q Consensus       179 ~l~~H~~~h~~-~~----~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~------~~f~~~~~l~~H~~~h~~~~  247 (440)
                      .|..|++.-.. ++    .-.|..|...|.....|.+|++.++    |.|..|.      .-|.....|..|.+.+|   
T Consensus       164 el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H---  236 (669)
T KOG2231|consen  164 ELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH---  236 (669)
T ss_pred             HHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC---
Confidence            66777653221 11    1346777777777777777776554    4555552      34566677777776655   


Q ss_pred             ccccC
Q psy12560        248 RFQCK  252 (440)
Q Consensus       248 ~~~C~  252 (440)
                       |.|.
T Consensus       237 -flCE  240 (669)
T KOG2231|consen  237 -FLCE  240 (669)
T ss_pred             -cccc
Confidence             5555

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.51  E-value=6.8e-05  Score=57.64  Aligned_cols=74  Identities=24%  Similarity=0.489  Sum_probs=20.7

Q ss_pred             ccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHHHHHHhhc
Q psy12560        222 VCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH  300 (440)
Q Consensus       222 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~H  300 (440)
                      +|..|+..|.+...|..|+...|+...   + ....+.....+..+++.-. ...+.|.+|++.|.+...|..||++.+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~---~-~~~~l~~~~~~~~~~~~~~-~~~~~C~~C~~~f~s~~~l~~Hm~~~~   74 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDI---P-DQKYLVDPNRLLNYLRKKV-KESFRCPYCNKTFRSREALQEHMRSKH   74 (100)
T ss_dssp             -----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred             Ccccccccccccccccccccccccccc---c-ccccccccccccccccccc-CCCCCCCccCCCCcCHHHHHHHHcCcc
Confidence            477788888888888888765554221   1 1112223334444443321 225889999999999999999998653

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.35  E-value=0.00014  Score=55.87  Aligned_cols=73  Identities=21%  Similarity=0.350  Sum_probs=16.5

Q ss_pred             ecccchhhccChHHHHHhHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCeecCccccccCChHHHHHHHHHh
Q psy12560         81 KCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH  158 (440)
Q Consensus        81 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h  158 (440)
                      +|..|+..|.+...|..|+...++-..-    ....+.....+..+++... ...+.|..|++.|.+...|..||+.+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~~~-~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRKKV-KESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             -----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             Cccccccccccccccccccccccccccc----ccccccccccccccccccc-CCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            4777777777777777777554432211    1111222233333332211 12467777777777777777777654

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.33  E-value=0.00017  Score=39.15  Aligned_cols=23  Identities=48%  Similarity=1.009  Sum_probs=11.5

Q ss_pred             cccCccccccCChHHHHHHHHHh
Q psy12560        249 FQCKLCDKIFFTLHNMRRHMRIH  271 (440)
Q Consensus       249 ~~C~~C~~~f~~~~~L~~H~~~H  271 (440)
                      |.|++|++.|.+...|+.|+++|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            44555555555555555555544

...

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.30  E-value=7e-05  Score=66.75  Aligned_cols=52  Identities=25%  Similarity=0.595  Sum_probs=41.1

Q ss_pred             CCccccCc--cccccCChHHHHHHHHH-h------------------cCCCceecCcCccccCChHHHHHHHH
Q psy12560        246 LKRFQCKL--CDKIFFTLHNMRRHMRI-H------------------KDRPLFECHDCHKSFTRKDNLERHVK  297 (440)
Q Consensus       246 ~~~~~C~~--C~~~f~~~~~L~~H~~~-H------------------~~~~~~~C~~C~~~f~~~~~l~~H~~  297 (440)
                      ++||+|++  |.|.|.....|+.|+.- |                  ...|||+|++|+|+|.....|+.|+.
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            47788865  77888888788877753 2                  12489999999999999999999976

>KOG1146|consensus

Probab=97.27  E-value=6.5e-05  Score=79.37  Aligned_cols=97  Identities=18%  Similarity=0.181  Sum_probs=74.1

Q ss_pred             CCCCCCCCCcccccCCccccccCCC--cccccccCCCCCCcchhhhcccCccchhccCCCCC-ccccCcccceeccC---
Q psy12560          1 MEQCPQCKGLVVCSESRLVQDSCGH--IKCRMCLLSDSTQCYLCWQKNEHASFIIEAPESDK-DEKFTIPDYIQVIP---   74 (440)
Q Consensus         1 ~~~C~~C~~~~~~~~~~l~~h~~~~--~~c~~c~~~~~~~C~~C~~~~~~~~~~~~h~~~~~-~~~~~~~~h~~~~~---   74 (440)
                      |..|-+|+-+...++.-|.-|....  ....  ...+.|+|.+|......+..+..|..... ..+..+..|++.-.   
T Consensus       734 ~~~civcd~~st~~l~~l~~h~~~~rs~ke~--v~g~~~~c~l~~y~t~~kanfqlh~Ktdkh~qk~~~~~hikegg~a~  811 (1406)
T KOG1146|consen  734 VFDCIVCDVFSTDRLDQLWFHNTRERSRKEQ--VPGDVPSCKLKPYATNTKANFQLHNKTDKHVQKYQLRAHIKEGGPAN  811 (1406)
T ss_pred             HHHHhhhhhhhhhhHHHHhhcchhhhhhhhc--ccCCCCcceecccccccchhhhhhcccchhhhccchhhhhhccCCcc
Confidence            4579999889999999999998644  3333  67899999999999999988888876543 56677777776321   


Q ss_pred             ----------CCCceeecccchhhccChHHHHHhH
Q psy12560         75 ----------GEPVMYKCLKCKRQFKVKYNCKYHI   99 (440)
Q Consensus        75 ----------~~~~~~~C~~C~~~f~~~~~l~~H~   99 (440)
                                +.++..+|..|+....+..-|..|-
T Consensus       812 ~~~t~~la~~~~P~~l~cn~cd~~Tns~~~L~lh~  846 (1406)
T KOG1146|consen  812 EYPTKTLASGPNPVHLKCNACDTPTNSPEPLLLHT  846 (1406)
T ss_pred             CCcchhhhcCCCccccccccccCCCCCccccccCC
Confidence                      1445678999999888888887773

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.25  E-value=0.0002  Score=40.21  Aligned_cols=25  Identities=36%  Similarity=0.728  Sum_probs=16.4

Q ss_pred             ceecCcCccccCChHHHHHHHHhhc
Q psy12560        276 LFECHDCHKSFTRKDNLERHVKSIH  300 (440)
Q Consensus       276 ~~~C~~C~~~f~~~~~l~~H~~~~H  300 (440)
                      +|.|..|++.|.+...|..|++.++
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            4667777777777777777766443

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.12  E-value=0.00025  Score=39.86  Aligned_cols=25  Identities=40%  Similarity=0.786  Sum_probs=15.6

Q ss_pred             ccccCccccccCChHHHHHHHHHhc
Q psy12560        248 RFQCKLCDKIFFTLHNMRRHMRIHK  272 (440)
Q Consensus       248 ~~~C~~C~~~f~~~~~L~~H~~~H~  272 (440)
                      +|.|..|++.|.+...|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            3566666666666666666666553

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=96.93  E-value=0.00025  Score=63.33  Aligned_cols=53  Identities=28%  Similarity=0.647  Sum_probs=44.0

Q ss_pred             CccccccCc--cCcccCChHHHHHHHHHhC-------------------CCCccccCccccccCChHHHHHHHH
Q psy12560        217 DKKIFVCEN--CGKSFKRKYDLALHIRTHF-------------------PLKRFQCKLCDKIFFTLHNMRRHMR  269 (440)
Q Consensus       217 ~~~~~~C~~--C~~~f~~~~~l~~H~~~h~-------------------~~~~~~C~~C~~~f~~~~~L~~H~~  269 (440)
                      +++||+|++  |.+.|++...|+.|+.--|                   ..|||+|++|+|+|.....|+.|+.
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            358999965  9999999999999986321                   2489999999999999999998864

>KOG2231|consensus

Probab=96.88  E-value=0.0018  Score=65.17  Aligned_cols=138  Identities=25%  Similarity=0.495  Sum_probs=94.0

Q ss_pred             eecCccccccCChHHHHHHHHHhcCCCCcccccccccccCCHHHHHHHHHHhcCCCcccCCCCC---------ccccCch
Q psy12560        136 YECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICE---------KSFIEKN  206 (440)
Q Consensus       136 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~---------~~f~~~~  206 (440)
                      +.|.+|+..|.-..             ..-.|..| ..|.+...|+.|+...|+  .+.|..|-         ....+..
T Consensus       100 ~~C~~C~~~~~~~~-------------~~~~~~~c-~~~~s~~~Lk~H~~~~H~--~~~c~lC~~~~kif~~e~k~Yt~~  163 (669)
T KOG2231|consen  100 HSCHICDRRFRALY-------------NKKECLHC-TEFKSVENLKNHMRDQHK--LHLCSLCLQNLKIFINERKLYTRA  163 (669)
T ss_pred             hhcCccccchhhhc-------------ccCCCccc-cchhHHHHHHHHHHHhhh--hhccccccccceeeeeeeehehHH
Confidence            67999998874221             11468899 889999999999965442  34444442         2233456


Q ss_pred             hhhhccccccC-cc----ccccCccCcccCChHHHHHHHHHhCCCCccccCccc------cccCChHHHHHHHHHhcCCC
Q psy12560        207 DLIKHQVTHSD-KK----IFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCD------KIFFTLHNMRRHMRIHKDRP  275 (440)
Q Consensus       207 ~l~~H~~~h~~-~~----~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~------~~f~~~~~L~~H~~~H~~~~  275 (440)
                      .|..|+..--. ++    --.|..|...|.....|.+|++.++    |.|.+|+      ..|.....|..|.+.+|   
T Consensus       164 el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H---  236 (669)
T KOG2231|consen  164 ELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH---  236 (669)
T ss_pred             HHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC---
Confidence            77777653211 21    1379999999999999999998776    7787774      56888899999999876   


Q ss_pred             ceecC--cCc-cccCChHHHHHHHH
Q psy12560        276 LFECH--DCH-KSFTRKDNLERHVK  297 (440)
Q Consensus       276 ~~~C~--~C~-~~f~~~~~l~~H~~  297 (440)
                       |.|.  .|. +.|.....+..|++
T Consensus       237 -flCE~~~C~~~~f~~~~~~ei~lk  260 (669)
T KOG2231|consen  237 -FLCEEEFCRTKKFYVAFELEIELK  260 (669)
T ss_pred             -ccccccccccceeeehhHHHHHHH
Confidence             7787  563 33444434444444

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.55  E-value=0.0028  Score=40.37  Aligned_cols=30  Identities=23%  Similarity=0.449  Sum_probs=14.3

Q ss_pred             CCceecCcCccccCChHHHHHHHHhhcCCC
Q psy12560        274 RPLFECHDCHKSFTRKDNLERHVKSIHLED  303 (440)
Q Consensus       274 ~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~  303 (440)
                      +.|-.|++|+..+.+..+|++|+...|..+
T Consensus        22 ~~PatCP~C~a~~~~srnLrRHle~~H~~k   51 (54)
T PF09237_consen   22 EQPATCPICGAVIRQSRNLRRHLEIRHFKK   51 (54)
T ss_dssp             S--EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred             CCCCCCCcchhhccchhhHHHHHHHHhccc
Confidence            345556666666666666666665555533

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.49  E-value=0.0028  Score=40.41  Aligned_cols=30  Identities=23%  Similarity=0.532  Sum_probs=13.3

Q ss_pred             CCccccCccccccCChHHHHHHHHHhcCCC
Q psy12560        246 LKRFQCKLCDKIFFTLHNMRRHMRIHKDRP  275 (440)
Q Consensus       246 ~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~  275 (440)
                      +.|-.|++|+..+....+|++|+.++++.+
T Consensus        22 ~~PatCP~C~a~~~~srnLrRHle~~H~~k   51 (54)
T PF09237_consen   22 EQPATCPICGAVIRQSRNLRRHLEIRHFKK   51 (54)
T ss_dssp             S--EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred             CCCCCCCcchhhccchhhHHHHHHHHhccc
Confidence            344555555555555555555555544443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.46  E-value=0.0026  Score=34.50  Aligned_cols=23  Identities=43%  Similarity=0.866  Sum_probs=13.2

Q ss_pred             eecCcCccccCChHHHHHHHHhhc
Q psy12560        277 FECHDCHKSFTRKDNLERHVKSIH  300 (440)
Q Consensus       277 ~~C~~C~~~f~~~~~l~~H~~~~H  300 (440)
                      |+|+.|++... +..|.+|++.+|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            56666666665 666666666555

>smart00355 ZnF_C2H2 zinc finger

Probab=96.44  E-value=0.0029  Score=34.73  Aligned_cols=19  Identities=37%  Similarity=0.905  Sum_probs=7.7

Q ss_pred             cCcCccccCChHHHHHHHH
Q psy12560        279 CHDCHKSFTRKDNLERHVK  297 (440)
Q Consensus       279 C~~C~~~f~~~~~l~~H~~  297 (440)
                      |..|++.|.....|..|++
T Consensus         3 C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        3 CPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCcchhCCHHHHHHHHH
Confidence            3444444444444444433

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.18  E-value=0.0038  Score=34.18  Aligned_cols=22  Identities=41%  Similarity=0.934  Sum_probs=15.7

Q ss_pred             eecCcCccccCChHHHHHHHHh
Q psy12560        277 FECHDCHKSFTRKDNLERHVKS  298 (440)
Q Consensus       277 ~~C~~C~~~f~~~~~l~~H~~~  298 (440)
                      |.|.+|++.|.+...|..|+++
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            5677777777777777777764

>PRK04860 hypothetical protein; Provisional

Probab=96.15  E-value=0.0026  Score=52.85  Aligned_cols=35  Identities=17%  Similarity=0.522  Sum_probs=16.3

Q ss_pred             ccccCccCcccCChHHHHHHHHHhCCCCccccCcccccc
Q psy12560        220 IFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIF  258 (440)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f  258 (440)
                      +|.|. |+.   ....+.+|.++|+++++|.|..|+..|
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l  153 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETL  153 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCcee
Confidence            34554 444   333444444444444444444444444

>smart00355 ZnF_C2H2 zinc finger

Probab=96.10  E-value=0.0067  Score=33.20  Aligned_cols=22  Identities=36%  Similarity=0.854  Sum_probs=11.1

Q ss_pred             ccCccccccCChHHHHHHHHHh
Q psy12560        250 QCKLCDKIFFTLHNMRRHMRIH  271 (440)
Q Consensus       250 ~C~~C~~~f~~~~~L~~H~~~H  271 (440)
                      .|..|++.|.....|..|++.|
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        2 RCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCcchhCCHHHHHHHHHHh
Confidence            4555555555555555555443

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.08  E-value=0.0043  Score=33.57  Aligned_cols=23  Identities=26%  Similarity=0.668  Sum_probs=11.9

Q ss_pred             cccCccccccCChHHHHHHHHHhc
Q psy12560        249 FQCKLCDKIFFTLHNMRRHMRIHK  272 (440)
Q Consensus       249 ~~C~~C~~~f~~~~~L~~H~~~H~  272 (440)
                      |+|+.|++... ...|.+|++.|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            45666665555 556666665543

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=95.79  E-value=0.0052  Score=33.59  Aligned_cols=23  Identities=35%  Similarity=0.891  Sum_probs=16.1

Q ss_pred             cccCccccccCChHHHHHHHHHh
Q psy12560        249 FQCKLCDKIFFTLHNMRRHMRIH  271 (440)
Q Consensus       249 ~~C~~C~~~f~~~~~L~~H~~~H  271 (440)
                      |.|.+|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            56777777777777777777643

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.74  E-value=0.014  Score=52.98  Aligned_cols=78  Identities=22%  Similarity=0.474  Sum_probs=43.0

Q ss_pred             cccccccccCCHHHHHHHHHHhcCCCcccCCCCCccccCchhhhhccccccCccccccCccCcccCChHHHHHHHHHhCC
Q psy12560        166 FCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFP  245 (440)
Q Consensus       166 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  245 (440)
                      .|..|...|.+-..|.+|++..+.    .|-+|++.-.-                     =..-|.+...|..|.+.-| 
T Consensus       222 ~C~FC~~~FYdDDEL~~HcR~~HE----~ChICD~v~p~---------------------~~QYFK~Y~~Le~HF~~~h-  275 (493)
T COG5236         222 LCIFCKIYFYDDDELRRHCRLRHE----ACHICDMVGPI---------------------RYQYFKSYEDLEAHFRNAH-  275 (493)
T ss_pred             hhhhccceecChHHHHHHHHhhhh----hhhhhhccCcc---------------------chhhhhCHHHHHHHhhcCc-
Confidence            577777777777777777765432    45555433110                     0123556666666654322 


Q ss_pred             CCccccCc--cc----cccCChHHHHHHHHHhc
Q psy12560        246 LKRFQCKL--CD----KIFFTLHNMRRHMRIHK  272 (440)
Q Consensus       246 ~~~~~C~~--C~----~~f~~~~~L~~H~~~H~  272 (440)
                         |.|.+  |.    ..|.....|..|+..-+
T Consensus       276 ---y~ct~qtc~~~k~~vf~~~~el~~h~~~~h  305 (493)
T COG5236         276 ---YCCTFQTCRVGKCYVFPYHTELLEHLTRFH  305 (493)
T ss_pred             ---eEEEEEEEecCcEEEeccHHHHHHHHHHHh
Confidence               55543  32    35666667777765533

>KOG2785|consensus

Probab=95.60  E-value=0.037  Score=51.47  Aligned_cols=58  Identities=24%  Similarity=0.420  Sum_probs=38.2

Q ss_pred             ccccCccccccCChHHHHHHHHHhcCC-----------------------CceecCcCc---cccCChHHHHHHHHhh-c
Q psy12560        248 RFQCKLCDKIFFTLHNMRRHMRIHKDR-----------------------PLFECHDCH---KSFTRKDNLERHVKSI-H  300 (440)
Q Consensus       248 ~~~C~~C~~~f~~~~~L~~H~~~H~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~~-H  300 (440)
                      |-.|-+|++.+.+...-..||..++|-                       .-|.|-.|.   +.|.+....++||... |
T Consensus       166 Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~K~H  245 (390)
T KOG2785|consen  166 PTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRDKGH  245 (390)
T ss_pred             CcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhhccC
Confidence            345666666666666666666655542                       226787787   9999999999999854 3


Q ss_pred             CCCCC
Q psy12560        301 LEDPS  305 (440)
Q Consensus       301 ~~~~~  305 (440)
                      ..-+|
T Consensus       246 Ckl~y  250 (390)
T KOG2785|consen  246 CKLPY  250 (390)
T ss_pred             cccCC
Confidence            34444

>PRK04860 hypothetical protein; Provisional

Probab=95.40  E-value=0.01  Score=49.38  Aligned_cols=39  Identities=26%  Similarity=0.730  Sum_probs=31.5

Q ss_pred             CccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCCh
Q psy12560        247 KRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRK  289 (440)
Q Consensus       247 ~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~  289 (440)
                      -+|.|. |+.   ....+++|.++|+++++|.|..|+..|...
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            368897 887   666788899999998899999998887654

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=94.98  E-value=0.0072  Score=33.78  Aligned_cols=22  Identities=41%  Similarity=0.927  Sum_probs=14.7

Q ss_pred             eecCcCccccCChHHHHHHHHh
Q psy12560        277 FECHDCHKSFTRKDNLERHVKS  298 (440)
Q Consensus       277 ~~C~~C~~~f~~~~~l~~H~~~  298 (440)
                      |.|..|++.|.+...|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            5677777777777777666653

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.34  E-value=0.012  Score=58.38  Aligned_cols=147  Identities=23%  Similarity=0.374  Sum_probs=68.4

Q ss_pred             ceeccccccccCChHHHHHHHH--HcCCC--CCeecC--ccccccCChHHHHHHHHHhcCCCCcccccc--cccccCCHH
Q psy12560        107 KLSCDICDKTFVNKSHLDYHKL--SHQDL--NPYECS--NCHKGFKNKGKLNRHMKIHSDSKEQWFCKV--CNKALMSVE  178 (440)
Q Consensus       107 ~~~C~~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~--C~~~f~~~~  178 (440)
                      .+.|..|...|.....|..|.+  .|.++  +++.|+  .|++.|.....+..|...|.+... +.+..  +...+....
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  367 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISP-AKEKLLNSSSKFSPLL  367 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCc-cccccccCcccccccc
Confidence            3455555555555555555555  45555  555555  455555555555555555444332 22221  222221111


Q ss_pred             HH-----HHHHHHhcCCCcccCC--CCCccccCchhhhhccccccCcc--ccccCccCcccCChHHHHHHHHHhCCCCcc
Q psy12560        179 SL-----KKHMKIHAGLKNYHCD--ICEKSFIEKNDLIKHQVTHSDKK--IFVCENCGKSFKRKYDLALHIRTHFPLKRF  249 (440)
Q Consensus       179 ~l-----~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  249 (440)
                      .-     ............+.+.  .|...+.....+..|...|....  .+.+..|...|.....+..|++.|....++
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (467)
T COG5048         368 NNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPL  447 (467)
T ss_pred             CCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccccCCce
Confidence            10     0000011112223332  24445555555555655555444  344566777777777777777666555554


Q ss_pred             ccCcc
Q psy12560        250 QCKLC  254 (440)
Q Consensus       250 ~C~~C  254 (440)
                      .|..+
T Consensus       448 ~~~~~  452 (467)
T COG5048         448 LCSIL  452 (467)
T ss_pred             eeccc
Confidence            44433

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.22  E-value=0.012  Score=58.35  Aligned_cols=150  Identities=24%  Similarity=0.440  Sum_probs=105.1

Q ss_pred             CCeecCccccccCChHHHHHHHH--HhcCCC-Cccccc--ccccccCCHHHHHHHHHHhcCCCcccCCC--CCccccCch
Q psy12560        134 NPYECSNCHKGFKNKGKLNRHMK--IHSDSK-EQWFCK--VCNKALMSVESLKKHMKIHAGLKNYHCDI--CEKSFIEKN  206 (440)
Q Consensus       134 ~~~~C~~C~~~f~~~~~L~~H~~--~h~~~~-~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~  206 (440)
                      .++.|..|...|.....|..|.+  .|.+.. .++.|+  .|++.|.....+..|...|.+..++.+..  +...+....
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL  367 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence            46889999999999999999998  677762 448999  79999999999999999998888777654  333333222


Q ss_pred             hhhhcc-----ccccCcccccc--CccCcccCChHHHHHHHHHhCCCC--ccccCccccccCChHHHHHHHHHhcCCCce
Q psy12560        207 DLIKHQ-----VTHSDKKIFVC--ENCGKSFKRKYDLALHIRTHFPLK--RFQCKLCDKIFFTLHNMRRHMRIHKDRPLF  277 (440)
Q Consensus       207 ~l~~H~-----~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~  277 (440)
                      .-..+.     ........+.+  ..|-..+.....+..|...|....  .+.+..|.+.|.....+..|++.|....++
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (467)
T COG5048         368 NNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPL  447 (467)
T ss_pred             CCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccccCCce
Confidence            211111     11122233444  236666777777777777776555  467788999999999999999998877776


Q ss_pred             ecCcCc
Q psy12560        278 ECHDCH  283 (440)
Q Consensus       278 ~C~~C~  283 (440)
                      .|..++
T Consensus       448 ~~~~~~  453 (467)
T COG5048         448 LCSILK  453 (467)
T ss_pred             eecccc
Confidence            665544

>KOG2482|consensus

Probab=94.00  E-value=0.1  Score=47.64  Aligned_cols=164  Identities=21%  Similarity=0.329  Sum_probs=87.0

Q ss_pred             CCCceeecccchhhccCh-HHHHHhHhhcCC----------------------CCceeccccccccCChHHHHHHHHH--
Q psy12560         75 GEPVMYKCLKCKRQFKVK-YNCKYHIHCTSL----------------------KAKLSCDICDKTFVNKSHLDYHKLS--  129 (440)
Q Consensus        75 ~~~~~~~C~~C~~~f~~~-~~l~~H~~~~~~----------------------~~~~~C~~C~~~f~~~~~l~~H~~~--  129 (440)
                      +......|-.|...+... +....|+..-++                      -..+.|-.|.+.|+.+..|+.||+.  
T Consensus       140 dt~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK~  219 (423)
T KOG2482|consen  140 DTIFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKKR  219 (423)
T ss_pred             CCeeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhcc
Confidence            333567899998877543 344455532222                      1247788888889888888888875  


Q ss_pred             cCCCCC--------eecC--ccccccCChHHHHHHH--HHh--cC------------CCC--cccccccccccCCHHHHH
Q psy12560        130 HQDLNP--------YECS--NCHKGFKNKGKLNRHM--KIH--SD------------SKE--QWFCKVCNKALMSVESLK  181 (440)
Q Consensus       130 h~~~~~--------~~C~--~C~~~f~~~~~L~~H~--~~h--~~------------~~~--~~~C~~C~~~f~~~~~l~  181 (440)
                      |....|        |.=.  .=|++..   ....+.  .+-  .+            ..+  ...|-.|.....+...|.
T Consensus       220 HrrinPknreYDkfyiINY~ev~ks~t---~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~l~  296 (423)
T KOG2482|consen  220 HRRINPKNREYDKFYIINYLEVGKSWT---IVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFYENPVFLF  296 (423)
T ss_pred             CcccCCCccccceEEEEeHhhcCCccc---hhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccchhhHHHHH
Confidence            332222        1100  0111111   111111  111  00            011  147999999999999999


Q ss_pred             HHHHHhcCCCcccCC-CCCccccCchhhhhccccccCccccccCccCcccCChHHHHHHHHHh
Q psy12560        182 KHMKIHAGLKNYHCD-ICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH  243 (440)
Q Consensus       182 ~H~~~h~~~~~~~C~-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  243 (440)
                      .||+..|.-...+-. .-+--|..+-.+..-.+.  ....-.|-.|.-.|.....|..||..+
T Consensus       297 eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRk--q~~~~~c~~cd~~F~~e~~l~~hm~e~  357 (423)
T KOG2482|consen  297 EHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRK--QKKKSRCAECDLSFWKEPGLLIHMVED  357 (423)
T ss_pred             HHHHHHHHhhHHhhccccccchhhhhhHHHHHHH--HhhccccccccccccCcchhhhhcccc
Confidence            999865532111000 001122222222222221  112246777888999999999998743

>KOG2785|consensus

Probab=93.69  E-value=0.19  Score=46.90  Aligned_cols=136  Identities=18%  Similarity=0.312  Sum_probs=87.7

Q ss_pred             eeecccchhhccChHHHHHhHhhcC-------------------------------------CCCceeccccccccCChH
Q psy12560         79 MYKCLKCKRQFKVKYNCKYHIHCTS-------------------------------------LKAKLSCDICDKTFVNKS  121 (440)
Q Consensus        79 ~~~C~~C~~~f~~~~~l~~H~~~~~-------------------------------------~~~~~~C~~C~~~f~~~~  121 (440)
                      .|.|..|...|.+...-+.|+++--                                     +..++.|..|.+.|.+..
T Consensus         3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~   82 (390)
T KOG2785|consen    3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPK   82 (390)
T ss_pred             cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChh
Confidence            5899999999999988888864310                                     123578999999999888


Q ss_pred             HHHHHHHHcCCC-----------------CCee-------------cCccccccCChHHHHHHH------HHhcC-----
Q psy12560        122 HLDYHKLSHQDL-----------------NPYE-------------CSNCHKGFKNKGKLNRHM------KIHSD-----  160 (440)
Q Consensus       122 ~l~~H~~~h~~~-----------------~~~~-------------C~~C~~~f~~~~~L~~H~------~~h~~-----  160 (440)
                      ....|+..-...                 ..+.             +..+...+........+.      .+...     
T Consensus        83 a~~~hl~Sk~h~~~~~~~~r~~e~d~a~~~q~~~~~p~~l~~~~e~e~~~~E~~~~~d~~~e~~~dd~~Edi~~d~~~e~  162 (390)
T KOG2785|consen   83 AHENHLKSKKHVENLSNHQRSEEGDSAKISQLPSRRPSNLQNKGESELKWYEVDSDEDSSEEEEEDDEEEDIEEDGDDED  162 (390)
T ss_pred             hHHHHHHHhhcchhhhhhhccccccchhhhhccccCccccccCCCcccchhhcccccccchhhccCcchhhhhhccchhc
Confidence            888887542110                 0111             222222222211111111      11110     


Q ss_pred             CCCcccccccccccCCHHHHHHHHHHhcCCC-----------------------cccCCCCC---ccccCchhhhhcccc
Q psy12560        161 SKEQWFCKVCNKALMSVESLKKHMKIHAGLK-----------------------NYHCDICE---KSFIEKNDLIKHQVT  214 (440)
Q Consensus       161 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-----------------------~~~C~~C~---~~f~~~~~l~~H~~~  214 (440)
                      ...+-.|-.|++.+.+...-..||..+|+--                       -|.|-.|+   +.|.+....+.||..
T Consensus       163 e~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~  242 (390)
T KOG2785|consen  163 ELIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD  242 (390)
T ss_pred             ccCCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence            1122568899999999999999998887632                       26788888   999999999999874

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=93.61  E-value=0.039  Score=30.76  Aligned_cols=21  Identities=38%  Similarity=0.822  Sum_probs=11.0

Q ss_pred             ccCCCCCccccCchhhhhccc
Q psy12560        193 YHCDICEKSFIEKNDLIKHQV  213 (440)
Q Consensus       193 ~~C~~C~~~f~~~~~l~~H~~  213 (440)
                      |.|..|++.|.+...|..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            345555555555555555544

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2482|consensus

Probab=93.34  E-value=0.19  Score=46.02  Aligned_cols=49  Identities=22%  Similarity=0.482  Sum_probs=34.2

Q ss_pred             cccCccccccCChHHHHHHHHHhcC---------------------------CCceecCcCccccCChHHHHHHHH
Q psy12560        249 FQCKLCDKIFFTLHNMRRHMRIHKD---------------------------RPLFECHDCHKSFTRKDNLERHVK  297 (440)
Q Consensus       249 ~~C~~C~~~f~~~~~L~~H~~~H~~---------------------------~~~~~C~~C~~~f~~~~~l~~H~~  297 (440)
                      ..|-.|...+-+...|..||.+-+.                           ...-.|-.|.-.|.....|..||.
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~  355 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMV  355 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcc
Confidence            3566666666666666666654321                           122468889999999999999987

>KOG2893|consensus

Probab=93.10  E-value=0.026  Score=48.59  Aligned_cols=48  Identities=27%  Similarity=0.563  Sum_probs=39.9

Q ss_pred             ccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHHHHHHhhcC
Q psy12560        250 QCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHL  301 (440)
Q Consensus       250 ~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  301 (440)
                      -|.+|++.|....-|.+|++..+    |+|.+|.+...+--.|..|.-.+|.
T Consensus        12 wcwycnrefddekiliqhqkakh----fkchichkkl~sgpglsihcmqvhk   59 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKAKH----FKCHICHKKLFSGPGLSIHCMQVHK   59 (341)
T ss_pred             eeeecccccchhhhhhhhhhhcc----ceeeeehhhhccCCCceeehhhhhh
Confidence            38899999999999988887533    9999999988888888888666776

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=92.72  E-value=0.099  Score=28.52  Aligned_cols=20  Identities=40%  Similarity=0.806  Sum_probs=14.4

Q ss_pred             eecCcCccccCChHHHHHHHH
Q psy12560        277 FECHDCHKSFTRKDNLERHVK  297 (440)
Q Consensus       277 ~~C~~C~~~f~~~~~l~~H~~  297 (440)
                      ..|+.||+.| ..+.|.+|++
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHH
Confidence            4577788888 6677777765

>KOG4173|consensus

Probab=92.17  E-value=0.077  Score=44.78  Aligned_cols=79  Identities=23%  Similarity=0.544  Sum_probs=61.2

Q ss_pred             ccccCc--cCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHH----------hcCCCceec--CcCccc
Q psy12560        220 IFVCEN--CGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRI----------HKDRPLFEC--HDCHKS  285 (440)
Q Consensus       220 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~----------H~~~~~~~C--~~C~~~  285 (440)
                      .|.|++  |...|.....+..|..+-|+   -.|.+|.+.|.+...|..|+.-          ..|...|.|  ..|+..
T Consensus        79 ~~~cqvagc~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~K  155 (253)
T KOG4173|consen   79 AFACQVAGCCQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEK  155 (253)
T ss_pred             cccccccchHHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhh
Confidence            466765  77778888878777765444   4788899999988888888743          245667999  459999


Q ss_pred             cCChHHHHHHHHhhcC
Q psy12560        286 FTRKDNLERHVKSIHL  301 (440)
Q Consensus       286 f~~~~~l~~H~~~~H~  301 (440)
                      |.+...-..|+-..|.
T Consensus       156 FkT~r~RkdH~I~~Hk  171 (253)
T KOG4173|consen  156 FKTSRDRKDHMIRMHK  171 (253)
T ss_pred             hhhhhhhhhHHHHhcc
Confidence            9999999999888886

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=91.77  E-value=0.15  Score=27.78  Aligned_cols=19  Identities=21%  Similarity=0.775  Sum_probs=9.4

Q ss_pred             ccCccccccCChHHHHHHHH
Q psy12560        250 QCKLCDKIFFTLHNMRRHMR  269 (440)
Q Consensus       250 ~C~~C~~~f~~~~~L~~H~~  269 (440)
                      .|+.||+.| ....|.+|+.
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHH
Confidence            455555555 3344555543

>smart00451 ZnF_U1 U1-like zinc finger

Probab=91.63  E-value=0.15  Score=30.23  Aligned_cols=23  Identities=35%  Similarity=0.641  Sum_probs=18.1

Q ss_pred             ceecCcCccccCChHHHHHHHHh
Q psy12560        276 LFECHDCHKSFTRKDNLERHVKS  298 (440)
Q Consensus       276 ~~~C~~C~~~f~~~~~l~~H~~~  298 (440)
                      +|.|.+|++.|.+...+..|+++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            47788888888888888888764

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=90.90  E-value=0.42  Score=37.17  Aligned_cols=25  Identities=20%  Similarity=0.469  Sum_probs=21.6

Q ss_pred             eec----CcCccccCChHHHHHHHHhhcC
Q psy12560        277 FEC----HDCHKSFTRKDNLERHVKSIHL  301 (440)
Q Consensus       277 ~~C----~~C~~~f~~~~~l~~H~~~~H~  301 (440)
                      |.|    ..|++.+.+...+.+|++..|+
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            788    8899999999999999888774

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>KOG2893|consensus

Probab=90.58  E-value=0.073  Score=45.93  Aligned_cols=43  Identities=26%  Similarity=0.505  Sum_probs=28.9

Q ss_pred             eeccccccccCChHHHHHHHHHcCCCCCeecCccccccCChHHHHHH
Q psy12560        108 LSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRH  154 (440)
Q Consensus       108 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H  154 (440)
                      -+|..|++.|.....|.+|++.    +-|+|.+|.+...+--.|..|
T Consensus        11 pwcwycnrefddekiliqhqka----khfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   11 PWCWYCNREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             ceeeecccccchhhhhhhhhhh----ccceeeeehhhhccCCCceee
Confidence            4677777777777777777654    337777777666555556655

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=90.52  E-value=0.14  Score=30.12  Aligned_cols=11  Identities=27%  Similarity=0.920  Sum_probs=5.3

Q ss_pred             cccCccccccC
Q psy12560        249 FQCKLCDKIFF  259 (440)
Q Consensus       249 ~~C~~C~~~f~  259 (440)
                      |.|..||..+.
T Consensus         2 ~~C~~CGy~y~   12 (33)
T cd00350           2 YVCPVCGYIYD   12 (33)
T ss_pred             EECCCCCCEEC
Confidence            44555554443

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>TIGR00622 ssl1 transcription factor ssl1

Probab=89.76  E-value=0.38  Score=37.04  Aligned_cols=24  Identities=25%  Similarity=0.683  Sum_probs=14.5

Q ss_pred             ccccCccccccCChHHHHHHHHHh
Q psy12560        248 RFQCKLCDKIFFTLHNMRRHMRIH  271 (440)
Q Consensus       248 ~~~C~~C~~~f~~~~~L~~H~~~H  271 (440)
                      .|+|+.|...|-..-+...|...|
T Consensus        81 ~y~C~~C~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        81 RYVCAVCKNVFCVDCDVFVHESLH  104 (112)
T ss_pred             ceeCCCCCCccccccchhhhhhcc
Confidence            466666666666555556665555

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00622 ssl1 transcription factor ssl1

Probab=89.52  E-value=0.83  Score=35.21  Aligned_cols=54  Identities=24%  Similarity=0.384  Sum_probs=33.8

Q ss_pred             cCCCCCccccCchhhhhccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccc
Q psy12560        194 HCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCD  255 (440)
Q Consensus       194 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~  255 (440)
                      .|-.|...|........  ..-.....|.|+.|...|-..-++..|...|      .|+.|.
T Consensus        57 ~C~~C~~~f~~~~~~~~--~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh------~CPGC~  110 (112)
T TIGR00622        57 FCFGCQGPFPKPPVSPF--DELKDSHRYVCAVCKNVFCVDCDVFVHESLH------CCPGCI  110 (112)
T ss_pred             cccCcCCCCCCcccccc--cccccccceeCCCCCCccccccchhhhhhcc------CCcCCC
Confidence            47777777765431110  0012234688888888888887888887666      366664

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00451 ZnF_U1 U1-like zinc finger

Probab=89.23  E-value=0.34  Score=28.71  Aligned_cols=22  Identities=23%  Similarity=0.599  Sum_probs=13.6

Q ss_pred             CeecCccccccCChHHHHHHHH
Q psy12560        135 PYECSNCHKGFKNKGKLNRHMK  156 (440)
Q Consensus       135 ~~~C~~C~~~f~~~~~L~~H~~  156 (440)
                      +|.|.+|+..|.+...+..|+.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            3566666666666666666654

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=89.15  E-value=0.19  Score=32.66  Aligned_cols=29  Identities=28%  Similarity=0.600  Sum_probs=21.7

Q ss_pred             CCCceecCcCccccCChHHHHHHHHhhcC
Q psy12560        273 DRPLFECHDCHKSFTRKDNLERHVKSIHL  301 (440)
Q Consensus       273 ~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  301 (440)
                      |+.-++|+-||..|+...++.+|+...|+
T Consensus        14 GE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          14 GEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             CceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            55567788888888888888888776665

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=88.57  E-value=0.82  Score=35.51  Aligned_cols=54  Identities=20%  Similarity=0.581  Sum_probs=43.2

Q ss_pred             cccccCccCcccCChHHHHHHHHHhCCC------------------------------------------Ccccc----C
Q psy12560        219 KIFVCENCGKSFKRKYDLALHIRTHFPL------------------------------------------KRFQC----K  252 (440)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~------------------------------------------~~~~C----~  252 (440)
                      +...|..|+....- +.+..|++..+..                                          .-|.|    .
T Consensus        10 ~vlIC~~C~~av~~-~~v~~HL~~~H~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~p~~~~~Pi~gLp~~~G~~C~~~~~   88 (109)
T PF12013_consen   10 RVLICRQCQYAVQP-SEVESHLRKRHHILKSQERQRIVEAIRQWPDLLPDPDDLQIPPDPSPPIPGLPVYDGYRCQCDPP   88 (109)
T ss_pred             CEEEeCCCCcccCc-hHHHHHHHHhcccccHHHHHHHHHHHHhhhhcccCccccCCCCCCCCcCCCCCCCCCeeeecCCC
Confidence            45689999988765 8899999843321                                          12889    9


Q ss_pred             ccccccCChHHHHHHHHHhcC
Q psy12560        253 LCDKIFFTLHNMRRHMRIHKD  273 (440)
Q Consensus       253 ~C~~~f~~~~~L~~H~~~H~~  273 (440)
                      .|++.+.+...+++|++.++|
T Consensus        89 ~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   89 HCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CCCcEeccHHHHHHHHHHhcC
Confidence            999999999999999998775

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>KOG4173|consensus

Probab=88.38  E-value=0.33  Score=41.13  Aligned_cols=77  Identities=26%  Similarity=0.514  Sum_probs=51.2

Q ss_pred             eeeccc--chhhccChHHHHHhHhhcCCCCceeccccccccCChHHHHHHHHHcC----------CCCCeec--Cccccc
Q psy12560         79 MYKCLK--CKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQ----------DLNPYEC--SNCHKG  144 (440)
Q Consensus        79 ~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~----------~~~~~~C--~~C~~~  144 (440)
                      .+.|+.  |-..|........|-..-++   -.|..|.+.|.+...|..|+...+          |...|.|  ..|+..
T Consensus        79 ~~~cqvagc~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~K  155 (253)
T KOG4173|consen   79 AFACQVAGCCQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEK  155 (253)
T ss_pred             cccccccchHHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhh
Confidence            467765  77888888877777654443   368888888888888888875433          3344666  346666


Q ss_pred             cCChHHHHHHHHHh
Q psy12560        145 FKNKGKLNRHMKIH  158 (440)
Q Consensus       145 f~~~~~L~~H~~~h  158 (440)
                      |.+...-..|+...
T Consensus       156 FkT~r~RkdH~I~~  169 (253)
T KOG4173|consen  156 FKTSRDRKDHMIRM  169 (253)
T ss_pred             hhhhhhhhhHHHHh
Confidence            66666666665443

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=83.57  E-value=0.9  Score=30.33  Aligned_cols=21  Identities=19%  Similarity=0.303  Sum_probs=16.7

Q ss_pred             CCCcccccccCCCCCCcchhh
Q psy12560         23 CGHIKCRMCLLSDSTQCYLCW   43 (440)
Q Consensus        23 ~~~~~c~~c~~~~~~~C~~C~   43 (440)
                      ..++.|+.|+....++|..|.
T Consensus        23 ~~~F~CPnCG~~~I~RC~~CR   43 (59)
T PRK14890         23 AVKFLCPNCGEVIIYRCEKCR   43 (59)
T ss_pred             cCEeeCCCCCCeeEeechhHH
Confidence            456899999887788888874

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=83.23  E-value=0.59  Score=30.47  Aligned_cols=29  Identities=17%  Similarity=0.306  Sum_probs=19.3

Q ss_pred             CCCCccccCccccccCChHHHHHHHHHhc
Q psy12560        244 FPLKRFQCKLCDKIFFTLHNMRRHMRIHK  272 (440)
Q Consensus       244 ~~~~~~~C~~C~~~f~~~~~L~~H~~~H~  272 (440)
                      .|+.-++|+-|+..|....++.+|...-+
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH   41 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAH   41 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhHHh
Confidence            35556777777777777777777765533

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=83.00  E-value=0.76  Score=35.43  Aligned_cols=30  Identities=23%  Similarity=0.672  Sum_probs=23.5

Q ss_pred             cccCccccccCChHHHHHHHHHhcCCCceecCcCccccCCh
Q psy12560        249 FQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRK  289 (440)
Q Consensus       249 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~  289 (440)
                      ..|+.||+.|...           +..|..|+.||..|.-.
T Consensus        10 R~Cp~CG~kFYDL-----------nk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDL-----------NKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccC-----------CCCCccCCCCCCccCcc
Confidence            5788888888765           45778899999888765

The function of members of this family is unknown.

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=81.84  E-value=0.71  Score=27.30  Aligned_cols=10  Identities=30%  Similarity=0.939  Sum_probs=5.2

Q ss_pred             cccCcccccc
Q psy12560        249 FQCKLCDKIF  258 (440)
Q Consensus       249 ~~C~~C~~~f  258 (440)
                      |.|..||..+
T Consensus         3 ~~C~~CG~i~   12 (34)
T cd00729           3 WVCPVCGYIH   12 (34)
T ss_pred             EECCCCCCEe
Confidence            4555555444

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PHA00626 hypothetical protein

Probab=80.47  E-value=0.9  Score=29.76  Aligned_cols=12  Identities=25%  Similarity=0.514  Sum_probs=7.1

Q ss_pred             eeecccchhhcc
Q psy12560         79 MYKCLKCKRQFK   90 (440)
Q Consensus        79 ~~~C~~C~~~f~   90 (440)
                      .|+|+.||..|.
T Consensus        23 rYkCkdCGY~ft   34 (59)
T PHA00626         23 DYVCCDCGYNDS   34 (59)
T ss_pred             ceEcCCCCCeec
Confidence            466666666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	440
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		4e-26
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		7e-26
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		8e-14
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		7e-11
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		1e-10
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		9e-06
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		7e-10
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		2e-09
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		5e-09
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		2e-09
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		4e-07
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		3e-09
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		5e-07
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		3e-09
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		6e-06
1tf6_A	190	Co-crystal Structure Of Xenopus Tfiiia Zinc Finger		3e-09
1tf6_A	190	Co-crystal Structure Of Xenopus Tfiiia Zinc Finger		1e-04
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		5e-09
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		3e-08
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		7e-09
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		4e-08
2lt7_A	133	Solution Nmr Structure Of Kaiso Zinc Finger Dna Bin		8e-09
2lt7_A	133	Solution Nmr Structure Of Kaiso Zinc Finger Dna Bin		9e-06
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		1e-08
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		5e-07
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		1e-08
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		4e-06
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		2e-08
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		2e-07
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		2e-08
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		2e-07
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		2e-08
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		8e-07
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		2e-08
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		3e-07
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		2e-08
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		2e-05
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		3e-08
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		3e-08
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		1e-07
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		4e-08
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		3e-05
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		2e-07
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		3e-07
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		9e-06
2rpc_A	155	Solution Structure Of The Tandem Zf-C2h2 Domains Fr		3e-07
2gli_A	155	Five-Finger GliDNA COMPLEX Length = 155		2e-06
2gli_A	155	Five-Finger GliDNA COMPLEX Length = 155		6e-05
2cot_A	77	Solution Structure Of The First And Second Zf-C2h2		3e-06
2lce_A	74	Chemical Shift Assignment Of Hr4436b From Homo Sapi		2e-05
4gzn_C	60	Mouse Zfp57 Zinc Fingers In Complex With Methylated		3e-05
1tf3_A	92	Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures		4e-05
2adr_A	60	Adr1 Dna-Binding Domain From Saccharomyces Cerevisi		1e-04
1x6e_A	72	Solution Structures Of The C2h2 Type Zinc Finger Do		6e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 83/167 (49%), Gaps = 1/167 (0%)
Query: 108 LSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFC 167
            +C  C K+F    HL  H+ +H    PY+C  C K F +K  L RH + H+  K  + C
Sbjct: 22  YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP-YKC 80
Query: 168 KVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
             C K+     +L+ H + H G K Y C  C KSF +   L  HQ TH+ +K + C  CG
Sbjct: 81  PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG 140
Query: 228 KSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDR 274
           KSF R+ +L  H RTH   K ++C  C K F     +  H R H  +
Sbjct: 141 KSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK 187

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score =  115 bits (287), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 78/140 (55%)
Query: 165 WFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
           + C  C K+    + L +H + H G K Y C  C KSF +K DL +HQ TH+ +K + C 
Sbjct: 22  YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 225 NCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHK 284
            CGKSF ++ +L  H RTH   K + C  C K F  L ++R H R H     ++C +C K
Sbjct: 82  ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 285 SFTRKDNLERHVKSIHLEDP 304
           SF+R+DNL  H ++   E P
Sbjct: 142 SFSREDNLHTHQRTHTGEKP 161

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 46/79 (58%)
Query: 165 WFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
           + C  C K+     +L+KH + H G K Y C  C KSF + +DL KHQ TH+ +K + C 
Sbjct: 5   YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 225 NCGKSFKRKYDLALHIRTH 243
            CGKSF R   L+ H RTH
Sbjct: 65  ECGKSFSRSDHLSRHQRTH 83

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 219 KIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFE 278
           K + C  CGKSF +  +L  H RTH   K ++C  C K F    ++++H R H     ++
Sbjct: 3   KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 279 CHDCHKSFTRKDNLERHVKS 298
           C +C KSF+R D+L RH ++
Sbjct: 63  CPECGKSFSRSDHLSRHQRT 82

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
           CNK    +  L+ H + H G K Y CD   CE+ F   + L +HQ  H+  K F C+ C 
Sbjct: 14  CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 228 KSFKRKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIH 271
           + F R   L  H RTH   K F C+   C K F     + RH  +H
Sbjct: 74  RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 216 SDKKIFVCE--NCGKSFKRKYDLALHIRTHFPLKRFQC--KLCDKIFFTLHNMRRHMRIH 271
           S+K+ F+C    C K + +   L +H R H   K +QC  K C++ F     ++RH R H
Sbjct: 2   SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 272 KDRPLFECHDCHKSFTRKDNLERHVKSIHLEDP 304
                F+C  C + F+R D+L+ H ++   E P
Sbjct: 62  TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKP 94

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 216 SDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRP 275
           S  K++ C+ CGKSF  K     H+  H  L+ + C +C K F   H++  HM+IH    
Sbjct: 6   SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 276 LFECHDCHKSFTRKDNLERHV----KSIHLEDPSENTNTING 313
            +EC+ C K F  +D+  RHV    KS       +NT   +G
Sbjct: 65  PYECNICAKRFMWRDSFHRHVTSCTKSYEAAKAEQNTTEASG 106

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 156 KIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTH 215
           ++ S +K+++ CK C +      +L  H + H   + Y CDIC K+F  ++ L  H+  H
Sbjct: 9   RLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH 68
Query: 216 SDKKIFVCENCGKSFKRKYDLALHIRTH 243
           S +K F C+ CGK F +   LA+H   H
Sbjct: 69  SKEKPFKCQECGKGFCQSRTLAVHKTLH 96

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 218 KKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLF 277
           KK F+C+ CG+ F + Y+L +H RTH   + + C +C K F    ++R H  IH     F
Sbjct: 15  KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 278 ECHDCHKSFTRKDNLERHVKSIHLEDPS 305
           +C +C K F +   L  H K++H++  S
Sbjct: 75  KCQECGKGFCQSRTLAVH-KTLHMQTSS 101

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENC 226
           CK+C K+     +L  H+ IH+  + Y C  C K F +K+D+ KH   H+ +K   C+ C
Sbjct: 4   CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 227 GKSFKRKYDLALHIRTH 243
           GK+F +  +L  H R H
Sbjct: 64  GKAFSQSSNLITHSRKH 80

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 221 FVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECH 280
           F C+ CGKSFKR   L+ H+  H   + + C+ C K F    +M++H  IH      +C 
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 281 DCHKSFTRKDNLERHVK 297
            C K+F++  NL  H +
Sbjct: 62  VCGKAFSQSSNLITHSR 78

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 102 TSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDS 161
           +S  + ++C+IC K F +  HL+ HKLSH    PY C  C   FK K +++ H++ H  S
Sbjct: 2   SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 162 -KEQWFCKVCNKALMSVESLKKHMK-IHAG 189
             + + C+ C K     + L  H+K +H+G
Sbjct: 62  VGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 27/120 (22%)
Query: 188 AGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLK 247
           +G     C+IC K F +   L +H+++HS +K + C  CG  FKRK  ++ H+R+H    
Sbjct: 3   SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH---- 58
Query: 248 RFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSEN 307
                  D                  +P + C  C K F+R D+L  H+K +H   PS  
Sbjct: 59  -------DGSV--------------GKP-YICQSCGKGFSRPDHLNGHIKQVH-SGPSSG 95

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 193 YHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQ 250
           Y C +  C++ F +K +L  H   H+ +K F C  C ++F ++  L  HIRTH   K F 
Sbjct: 5   YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 251 CKLCDKIFFTLHNMRRHMRIH 271
           C +C + F TLH   RH +IH
Sbjct: 65  CDICGRKFATLHTRTRHTKIH 85

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 224 ENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
           E+C + F +K +L  HIR H   K FQC++C + F    ++  H+R H     F C  C 
Sbjct: 10  ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICG 69
Query: 284 KSFTRKDNLERHVKSIHLE 302
           + F       RH K IHL 
Sbjct: 70  RKFATLHTRTRHTK-IHLR 87

>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain Bound To The 5s Ribosomal Rna Gene Internal Control Region Length = 190

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 11/147 (7%)
Query: 139 SNCHKGFKNKGKLNRHMKIHSDSKEQWFCK--VCNKALMSVESLKKHMKIHAGLKNYHCD 196
           ++C   +    KL  H+  H+  K  + CK   C K   S+  L +H   H G KN+ CD
Sbjct: 18  ADCGAAYNKNWKLQAHLCKHTGEKP-FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCD 76
Query: 197 I--CEKSFIEKNDLIKHQVTHSDKKI--FVC--ENCGKSFKRKYDLALHIRTHFPLKRFQ 250
              C+  F  K ++ KH     + KI  +VC  ENCGK+FK+   L +H  +H     ++
Sbjct: 77  SDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYE 136
Query: 251 C--KLCDKIFFTLHNMRRHMRIHKDRP 275
           C  + CDK F     ++RH ++H   P
Sbjct: 137 CPHEGCDKRFSLPSRLKRHEKVHAGYP 163

>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain Bound To The 5s Ribosomal Rna Gene Internal Control Region Length = 190

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 219 KIFVCE--NCGKSFKRKYDLALHIRTHFPLKRFQCK--LCDKIFFTLHNMRRHMRIHKDR 274
           K ++C   +CG ++ + + L  H+  H   K F CK   C+K F +LH++ RH   H   
Sbjct: 11  KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 275 PLFECHD--CHKSFTRKDNLERHVKSIH 300
             F C    C   FT K N+++H    H
Sbjct: 71  KNFTCDSDGCDLRFTTKANMKKHFNRFH 98

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%)
Query: 159 SDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDK 218
           S S     C+VC K     + LK HM+ H G+K Y C  C+ +  + + L KH   HSD+
Sbjct: 3   SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 219 KIFVCENCGKSFKRKYDLALHIRTH 243
           + F C+ C  + +    L +H+R+H
Sbjct: 63  RPFKCQICPYASRNSSQLTVHLRSH 87

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 223 CENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC 282
           CE CGK F RK  L  H+R H  +K ++CK CD       ++ +H+RIH D   F+C  C
Sbjct: 11  CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 283 HKSFTRKDNLERHVKSIHLEDPSENTN 309
             +      L  H++S H  D   ++ 
Sbjct: 71  PYASRNSSQLTVHLRS-HTGDSGPSSG 96

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 102 TSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRH--MKIHS 159
           +S  + + C  C K F++K +L  H   H    P+EC  C K +  K  L  H      +
Sbjct: 2   SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 160 DSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQV 213
            S++ + C VC +       L+ HM  H G   Y C  C + F++K DL  H +
Sbjct: 62  RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMI 115

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 188 AGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIR---THF 244
           +G     C  C K F+ K  L  H   H+ +K F C  CGK + RK +L  H      + 
Sbjct: 3   SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 245 PLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
             + F C +C + F     +R HM  H     ++C  C + F +K +L+ H+  +H
Sbjct: 63  SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118

>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding Domain In Complex With Kaiso Binding Site Dna Length = 133

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 53/97 (54%)
Query: 146 KNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEK 205
           + K K + H ++  D +  + C VC ++ + + SL++H  IH+  K Y C  CEK F   
Sbjct: 4   RMKVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLA 63
Query: 206 NDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRT 242
               KH++ H+ ++ + C  CGKSF     ++ HI++
Sbjct: 64  EYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKS 100

>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding Domain In Complex With Kaiso Binding Site Dna Length = 133

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 44/94 (46%)
Query: 221 FVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECH 280
           ++C  C +S+     L  H   H   K++ C+ C+K+F       +H   H     ++C 
Sbjct: 23  YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 281 DCHKSFTRKDNLERHVKSIHLEDPSENTNTINGH 314
            C KSF     +  H+KS+H +DPS ++     H
Sbjct: 83  ACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLH 116

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKS 229
           C++      SL +H++IH G K + C IC ++F   + L  H  TH+ +K F C+ CG+ 
Sbjct: 12  CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 230 FKRKYDLALHIRTHFPLK 247
           F R  +   H + H   K
Sbjct: 72  FARSDERKRHTKIHLRQK 89

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 224 ENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
           E+C + F +   L  HIR H   K FQC++C + F    ++  H+R H     F C  C 
Sbjct: 10  ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 284 KSFTRKDNLERHVKSIHLE 302
           + F R D  +RH K IHL 
Sbjct: 70  RKFARSDERKRHTK-IHLR 87

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 193 YHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQ 250
           Y C +  C++ F +K +L  H   H+ +K F C  C ++F +   L  HIRTH   K F 
Sbjct: 5   YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 251 CKLCDKIFFTLHNMRRHMRIH 271
           C +C + F TLH   RH +IH
Sbjct: 65  CDICGRKFATLHTRDRHTKIH 85

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 224 ENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
           E+C + F +K +L  HIR H   K FQC++C + F     + +H+R H     F C  C 
Sbjct: 10  ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICG 69
Query: 284 KSFTRKDNLERHVKSIHLE 302
           + F      +RH K IHL 
Sbjct: 70  RKFATLHTRDRHTK-IHLR 87

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKS 229
           C++     + L +H++IH G K + C IC ++F   + L  H  TH+ +K F C+ CG+ 
Sbjct: 11  CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 230 FKRKYDLALHIRTHF 244
           F R  +   H + H 
Sbjct: 71  FARSDERKRHTKIHL 85

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 224 ENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
           E+C + F R  +L  HIR H   K FQC++C + F    ++  H+R H     F C  C 
Sbjct: 9   ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 68
Query: 284 KSFTRKDNLERHVKSIHL 301
           + F R D  +RH K IHL
Sbjct: 69  RKFARSDERKRHTK-IHL 85

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKS 229
           C++     + L +H++IH G K + C IC ++F   + L  H  TH+ +K F C+ CG+ 
Sbjct: 12  CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 230 FKRKYDLALHIRTHFPLK 247
           F R  +   H + H   K
Sbjct: 72  FARSDERKRHTKIHLRQK 89

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 224 ENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
           E+C + F R  +L  HIR H   K FQC++C + F    ++  H+R H     F C  C 
Sbjct: 10  ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 284 KSFTRKDNLERHVKSIHL 301
           + F R D  +RH K IHL
Sbjct: 70  RKFARSDERKRHTK-IHL 86

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKS 229
           C++      +L +H++IH G K + C IC ++F   + L  H  TH+ +K F C+ CG+ 
Sbjct: 12  CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 230 FKRKYDLALHIRTHFPLK 247
           F R  +   H + H   K
Sbjct: 72  FARSDERKRHTKIHLRQK 89

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 224 ENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
           E+C + F    +L  HIR H   K FQC++C + F    ++  H+R H     F C  C 
Sbjct: 10  ESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 284 KSFTRKDNLERHVKSIHLE 302
           + F R D  +RH K IHL 
Sbjct: 70  RKFARSDERKRHTK-IHLR 87

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKS 229
           C++     + L +H++IH G K + C IC ++F   + L  H  TH+ +K F C+ CG+ 
Sbjct: 12  CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 230 FKRKYDLALHIRTHF 244
           F R  +   H + H 
Sbjct: 72  FARSDERKRHTKIHL 86

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 224 ENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
           E+C + F R  +L  HIR H   K FQC++C + F    ++  H+R H     F C  C 
Sbjct: 10  ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 284 KSFTRKDNLERHVKSIHL 301
           + F R D  +RH K IHL
Sbjct: 70  RKFARSDERKRHTK-IHL 86

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
           C K       LK H++ H G K YHCD   C   F   ++L +H   H+  + F C+ C 
Sbjct: 14  CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 228 KSFKRKYDLALHIRTHF 244
           ++F R   LALH++ HF
Sbjct: 74  RAFSRSDHLALHMKRHF 90

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 226 CGKSFKRKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
           CGK++ +   L  H+RTH   K + C    C   F     + RH R H     F+C  C 
Sbjct: 14  CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 284 KSFTRKDNLERHVK 297
           ++F+R D+L  H+K
Sbjct: 74  RAFSRSDHLALHMK 87

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 224 ENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
           E+C + F R  DL  HIR H   K FQC++C + F    ++  H+R H     F C  C 
Sbjct: 10  ESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 284 KSFTRKDNLERHVKSIHLE 302
           + F R D  +RH K IHL 
Sbjct: 70  RKFARSDERKRHTK-IHLR 87

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKS 229
           C++       L +H++IH G K + C IC ++F   + L  H  TH+ +K F C+ CG+ 
Sbjct: 12  CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 230 FKRKYDLALHIRTHFPLK 247
           F R  +   H + H   K
Sbjct: 72  FARSDERKRHTKIHLRQK 89

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 224 ENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
           E+C + F R  +L  HIR H   K FQC++C + F    ++  H+R H     F C  C 
Sbjct: 10  ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 284 KSFTRKDNLERHVKSIHL 301
           + F R D  +RH K IHL
Sbjct: 70  RKFARSDERKRHTK-IHL 86

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
           C K       LK H++ H G K YHCD   C   F   ++L +H   H+  + F C+ C 
Sbjct: 13  CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 228 KSFKRKYDLALHIRTHF 244
           ++F R   LALH++ HF
Sbjct: 73  RAFSRSDHLALHMKRHF 89

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 226 CGKSFKRKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
           CGK++ +   L  H+RTH   K + C    C   F     + RH R H     F+C  C 
Sbjct: 13  CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 284 KSFTRKDNLERHVK 297
           ++F+R D+L  H+K
Sbjct: 73  RAFSRSDHLALHMK 86

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 198 CEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKL--CD 255
           C K F + + + KH  TH  + + VC  CGK+F     L  H   H   K FQC    C 
Sbjct: 13  CTKMFRDNSAMRKHLHTHGPR-VHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 256 KIFFTLHNMRRHMRIHK-DRPLFECHD-CHKSFTRKDNLERHV 296
           K F    N+R H+RIH  DRP     D C+K F +  NL+ H+
Sbjct: 72  KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHC--DICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
           C K       LK H++ H G K Y C  + C+  F   ++L +H   H+  K F C  C 
Sbjct: 23  CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 228 KSFKRKYDLALHIRTH 243
           +SF R   LALH++ H
Sbjct: 83  RSFSRSDHLALHMKRH 98

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 218 KKIFVCE--NCGKSFKRKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIHKD 273
           ++I  C+   C K + +   L  H+RTH   K ++C    CD  F     + RH R H  
Sbjct: 13  RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG 72
Query: 274 RPLFECHDCHKSFTRKDNLERHVK 297
              F+C  C++SF+R D+L  H+K
Sbjct: 73  AKPFQCGVCNRSFSRSDHLALHMK 96

>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 198 CEKSFIEKNDLIKH----QVTHSDKKIFVC--ENC---GKSFKRKYDLALHIRTHFPLKR 248
           C+++F   ++L+ H     V   ++   VC  E C   GKSFK KY L  HIR H   K 
Sbjct: 31  CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 249 FQCKL--CDKIFFTLHNMRRHMRIHKDRPLFEC--HDCHKSFTRKDNLERHVKSIHLEDP 304
           F C    C KIF    N++ H R H     F+C    C + F    + ++H+  +H  D 
Sbjct: 91  FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMH-VHTSDK 149
Query: 305 S 305
           S
Sbjct: 150 S 150

>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 14/146 (9%)
Query: 111 DICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKG--------FKNKGKLNRHMKIHSDSK 162
           D C + F ++  L +H  S       +   CH G        FK +  L  HM+ H+  K
Sbjct: 7   DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK 66
Query: 163 -EQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC--DICEKSFIEKNDLIKHQ-VTHSDK 218
             +   + C K+   +E+LK H++ H G K Y C  + C K+F   +D  KHQ  THS++
Sbjct: 67  PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 126
Query: 219 KIFVCE--NCGKSFKRKYDLALHIRT 242
           K +VC+   C K +     L  H++T
Sbjct: 127 KPYVCKLPGCTKRYTDPSSLRKHVKT 152

>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 15/146 (10%)
Query: 170 CNKALMSVESLKKHMK---IHAGLKNY--HCDICEKS---FIEKNDLIKHQVTHSDKKIF 221
           C++   S E L  H+    IH   K +  H   C +    F  +  L+ H   H+ +K  
Sbjct: 9   CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 222 VC--ENCGKSFKRKYDLALHIRTHFPLKRFQC--KLCDKIFFTLHNMRRHM-RIHKDRPL 276
            C  E C KS+ R  +L  H+R+H   K + C  + C K F    +  +H  R H +   
Sbjct: 69  KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
Query: 277 FECH--DCHKSFTRKDNLERHVKSIH 300
           + C    C K +T   +L +HVK++H
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKHVKTVH 154

>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain Of Zinc Finger Protein 435 Length = 77

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
           + Y CD C KSF   +DL KH+ TH+ +K + C+ CGK+F ++  L  H R H
Sbjct: 17  RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69

>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens, Northeast Structural Genomics Consortium Length = 74

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
           K Y CD C+ SF  K +L  H+  H+ +K + C  CG  F R  +L  H R H
Sbjct: 16  KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68

>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna Length = 60

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSD 160
           C+ C KT+ + S L  H+ +H    P  C  C K F+++ ++NRH+K+H +
Sbjct: 7   CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57

>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures Length = 92

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 219 KIFVCE--NCGKSFKRKYDLALHIRTHFPLKRFQCK--LCDKIFFTLHNMRRHMRIHKDR 274
           K ++C   +CG ++ + + L  H+  H   K F CK   C+K F +LH++ RH   H   
Sbjct: 2   KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 275 PLFECHD--CHKSFTRKDNLERHVKSIH 300
             F C    C   FT K N+++H    H
Sbjct: 62  KNFTCDSDGCDLRFTTKANMKKHFNRFH 89

>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae, Nmr, 25 Structures Length = 60

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 249 FQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSE 306
           F C++C + F    +++RH R H +   + C  C+++FTR+D L RH + IH  +  E
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60

>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of Human Zinc Finger Protein 24 Length = 72

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
           K Y C  C K+F   + L++HQ  H+ +K + C  CGK+F +   L  H R H
Sbjct: 13  KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	440
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-38
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-30
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-20
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-28
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	3e-22
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-21
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	3e-13
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-25
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-24
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-20
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-15
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-11
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	9e-25
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	5e-24
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	4e-09
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	6e-24
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-22
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	8e-13
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	5e-09
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	6e-23
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-21
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-11
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	3e-20
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-19
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	9e-18
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	5e-11
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	3e-20
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	9e-19
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	1e-16
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	5e-15
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	9e-20
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	4e-18
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	5e-18
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	1e-08
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	8e-19
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	5e-18
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-17
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	4e-16
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	5e-15
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-18
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-15
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	6e-13
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	7e-18
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-17
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-16
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	4e-15
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	9e-13
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	7e-10
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	8e-18
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-14
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-09
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	7e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	5e-05
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	2e-17
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	5e-16
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	2e-13
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	2e-12
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-17
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	7e-17
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	3e-16
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-11
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	5e-07
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-17
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	5e-16
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-10
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	6e-06
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	4e-17
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-16
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-15
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	7e-06
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-16
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	5e-15
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	5e-10
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	1e-05
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-15
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	6e-12
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-10
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	3e-10
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	3e-08
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	4e-15
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-09
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-07
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	5e-07
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	7e-15
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	5e-12
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-11
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	1e-08
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	6e-04
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	3e-14
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	6e-10
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	1e-07
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	5e-07
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-14
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-13
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	9e-12
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	4e-11
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-06
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	1e-13
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	2e-11
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	5e-10
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	5e-06
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	3e-04
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-12
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-12
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	8e-12
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	6e-10
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	3e-08
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	1e-12
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	4e-12
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	8e-11
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	6e-09
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	3e-04
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	3e-04
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-12
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-11
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	7e-10
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-09
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	4e-08
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	4e-11
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-09
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	8e-09
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	1e-07
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-07
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	4e-05
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	7e-11
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	3e-09
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	6e-08
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	2e-07
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	4e-10
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	8e-07
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	9e-06
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	4e-04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	1e-09
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	3e-07
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	6e-05
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	9e-05
2epa_A	72	Krueppel-like factor 10; transforming growth facto	2e-09
2epa_A	72	Krueppel-like factor 10; transforming growth facto	3e-09
2epa_A	72	Krueppel-like factor 10; transforming growth facto	2e-08
2epa_A	72	Krueppel-like factor 10; transforming growth facto	3e-05
2epa_A	72	Krueppel-like factor 10; transforming growth facto	1e-04
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	2e-08
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	4e-06
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	1e-05
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	9e-05
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	1e-07
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	1e-07
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	2e-07
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	5e-07
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	5e-05
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	1e-04
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	2e-07
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	8e-06
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	9e-05
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	3e-07
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	9e-06
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-07
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-04
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-04
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	9e-07
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-05
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-06
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-05
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	1e-06
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	2e-06
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	6e-04
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-06
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-05
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-06
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-05
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-06
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-05
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-06
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-04
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-06
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-05
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-06
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-05
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-06
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-04
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-06
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	6e-06
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-06
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-06
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	2e-06
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	8e-05
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-06
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-05
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-06
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	3e-05
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-06
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-05
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-06
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-04
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-06
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-04
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-06
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-05
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-06
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-04
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-06
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-05
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-06
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-05
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-06
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-04
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-06
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-05
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-06
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-04
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-06
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	9e-05
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	4e-06
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	4e-05
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	4e-06
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	2e-05
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-06
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	4e-06
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	3e-04
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	5e-06
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-04
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	9e-04
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	5e-06
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	6e-05
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	5e-06
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-04
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-06
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-04
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	6e-06
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	2e-04
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	4e-04
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	4e-04
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	6e-06
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	2e-05
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	5e-04
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	7e-06
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	9e-05
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	7e-06
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-05
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	7e-06
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-04
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	7e-06
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	3e-04
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-06
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-04
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-06
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-04
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	8e-06
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-05
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	9e-06
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	1e-05
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	3e-04
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	9e-06
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-04
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	9e-06
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-05
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-05
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-05
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	1e-05
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	1e-05
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	8e-04
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	8e-04
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-05
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-05
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-05
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-05
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	5e-04
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	1e-05
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	5e-05
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	4e-04
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-05
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-04
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-05
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-04
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	1e-05
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	4e-05
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	3e-04
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-05
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-04
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-05
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-04
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-05
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-05
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	6e-04
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	1e-05
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	5e-05
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-05
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-04
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	1e-05
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	2e-04
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-05
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-04
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-05
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-04
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	2e-05
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-05
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-04
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-05
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-05
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	2e-05
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	2e-04
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-05
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-04
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	2e-05
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	4e-05
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	8e-05
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	3e-05
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	7e-04
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-05
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-05
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-05
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-04
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-05
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-05
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	3e-05
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	4e-05
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	9e-04
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	3e-05
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	2e-04
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-05
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-05
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	3e-05
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	2e-04
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	5e-04
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-05
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-05
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-04
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-05
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-04
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-05
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-05
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-04
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	4e-05
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	8e-05
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-05
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	8e-05
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	9e-05
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-05
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	7e-05
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	7e-05
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	6e-04
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	7e-04
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	7e-05
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-04
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	8e-05
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-05
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	8e-05
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	1e-04
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	1e-04
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	9e-05
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	1e-04
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	3e-04
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	1e-04
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	8e-04
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	1e-04
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	6e-04
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	3e-04
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	9e-04
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	4e-04

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score =  137 bits (347), Expect = 1e-38
 Identities = 62/188 (32%), Positives = 88/188 (46%), Gaps = 8/188 (4%)

Query: 116 TFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK--EQWFCKVCNKA 173
           +    S             PY C  C K F     L  H + H+  K  +   C  C K+
Sbjct: 2   SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYK---CPECGKS 58

Query: 174 LMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRK 233
               + L +H + H G K Y C  C KSF ++ +L  HQ TH+ +K + C  CGKSF + 
Sbjct: 59  FSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQL 118

Query: 234 YDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHK-DRPLFECHDCHKSFTRKDNL 292
             L  H RTH   K ++C  C K F    N+  H R H  ++P ++C +C KSF+R+D L
Sbjct: 119 AHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKP-YKCPECGKSFSRRDAL 177

Query: 293 ERHVKSIH 300
             H +  H
Sbjct: 178 NVH-QRTH 184

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score =  115 bits (290), Expect = 2e-30
 Identities = 58/168 (34%), Positives = 81/168 (48%), Gaps = 9/168 (5%)

Query: 80  YKCLKCKRQFKVKYNCKYH--IHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYE 137
           Y C +C + F    +   H   H T  K    C  C K+F +K  L  H+ +H    PY+
Sbjct: 22  YACPECGKSFSRSDHLAEHQRTH-TGEKP-YKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79

Query: 138 CSNCHKGFKNKGKLNRHMKIHSDSK--EQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
           C  C K F  +  L  H + H+  K      C  C K+   +  L+ H + H G K Y C
Sbjct: 80  CPECGKSFSQRANLRAHQRTHTGEKPYA---CPECGKSFSQLAHLRAHQRTHTGEKPYKC 136

Query: 196 DICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
             C KSF  +++L  HQ TH+ +K + C  CGKSF R+  L +H RTH
Sbjct: 137 PECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 87.9 bits (219), Expect = 2e-20
 Identities = 48/144 (33%), Positives = 67/144 (46%), Gaps = 9/144 (6%)

Query: 80  YKCLKCKRQFKVKYNCKYH--IHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYE 137
           YKC +C + F  K +   H   H T  K    C  C K+F  +++L  H+ +H    PY 
Sbjct: 50  YKCPECGKSFSDKKDLTRHQRTH-TGEKP-YKCPECGKSFSQRANLRAHQRTHTGEKPYA 107

Query: 138 CSNCHKGFKNKGKLNRHMKIHSDSK--EQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
           C  C K F     L  H + H+  K  +   C  C K+    ++L  H + H G K Y C
Sbjct: 108 CPECGKSFSQLAHLRAHQRTHTGEKPYK---CPECGKSFSREDNLHTHQRTHTGEKPYKC 164

Query: 196 DICEKSFIEKNDLIKHQVTHSDKK 219
             C KSF  ++ L  HQ TH+ KK
Sbjct: 165 PECGKSFSRRDALNVHQRTHTGKK 188

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score =  110 bits (277), Expect = 1e-28
 Identities = 54/182 (29%), Positives = 78/182 (42%), Gaps = 17/182 (9%)

Query: 135 PYECSN--CHKGFKNKGKLNRHMKIHSDSK--EQWFCK--VCNKALMSVESLKKHMKIHA 188
            Y CS   C   +    KL  H+  H+  K      CK   C K   S+  L +H   H 
Sbjct: 12  RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFP---CKEEGCEKGFTSLHHLTRHSLTHT 68

Query: 189 GLKNYHCD--ICEKSFIEKNDLIKHQVTHSDKKI--FVC--ENCGKSFKRKYDLALHIRT 242
           G KN+ CD   C+  F  K ++ KH     + KI  +VC  ENCGK+FK+   L +H  +
Sbjct: 69  GEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS 128

Query: 243 HFPLKRFQCK--LCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
           H     ++C    CDK F     ++RH ++H   P  +   C           +HV   H
Sbjct: 129 HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 188

Query: 301 LE 302
            +
Sbjct: 189 QD 190

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 92.7 bits (231), Expect = 3e-22
 Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 13/130 (10%)

Query: 182 KHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCE--NCGKSFKRKYDLA 237
               +    K Y C    C  ++ +   L  H   H+ +K F C+   C K F   + L 
Sbjct: 2   GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61

Query: 238 LHIRTHFPLKRFQCK--LCDKIFFTLHNMRRHMRIH---KDRPLFECH--DCHKSFTRKD 290
            H  TH   K F C    CD  F T  NM++H       K    + CH  +C K+F + +
Sbjct: 62  RHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICV-YVCHFENCGKAFKKHN 120

Query: 291 NLERHVKSIH 300
            L+ H +  H
Sbjct: 121 QLKVH-QFSH 129

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 91.1 bits (227), Expect = 1e-21
 Identities = 38/181 (20%), Positives = 60/181 (33%), Gaps = 25/181 (13%)

Query: 80  YKC--LKCKRQFKVKYNCKYH--IH-------CTSLKAKLSCDICDKTFVNKSHLDYHKL 128
           Y C    C   +   +  + H   H       C         + C+K F +  HL  H L
Sbjct: 13  YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKE-------EGCEKGFTSLHHLTRHSL 65

Query: 129 SHQDLNPYECS--NCHKGFKNKGKLNRHMKIHSDSKEQWF---CKVCNKALMSVESLKKH 183
           +H     + C    C   F  K  + +H     + K   +    + C KA      LK H
Sbjct: 66  THTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH 125

Query: 184 MKIHAGLKNYHC--DICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIR 241
              H     Y C  + C+K F   + L +H+  H+       ++C    K       H+ 
Sbjct: 126 QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 185

Query: 242 T 242
            
Sbjct: 186 E 186

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 67.2 bits (165), Expect = 3e-13
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 209 IKHQVTHSDKKIFVCEN--CGKSFKRKYDLALHIRTHFPLKRFQCK--LCDKIFFTLHNM 264
           +  +      K ++C    CG ++ + + L  H+  H   K F CK   C+K F +LH++
Sbjct: 1   MGEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHL 60

Query: 265 RRHMRIH-KDRPLFEC--HDCHKSFTRKDNLERHVKSIH 300
            RH   H  ++  F C    C   FT K N+++H  +  
Sbjct: 61  TRHSLTHTGEKN-FTCDSDGCDLRFTTKANMKKH-FNRF 97

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score =  100 bits (252), Expect = 2e-25
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 14/151 (9%)

Query: 135 PYECSNCHKGFKNKGKLNRHMK---IHSDSK----EQWFCKVCNKALMSVESLKKHMKIH 187
                 C + F ++ +L  H+    IH + K        C    +   +   L  HM+ H
Sbjct: 3   DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH 62

Query: 188 AGLKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCE--NCGKSFKRKYDLALHI-RT 242
            G K + C    C KS+    +L  H  +H+ +K ++CE   C K+F    D A H  RT
Sbjct: 63  TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRT 122

Query: 243 HFPLKRFQCKL--CDKIFFTLHNMRRHMRIH 271
           H   K + CKL  C K +    ++R+H++  
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 97.3 bits (243), Expect = 3e-24
 Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 24/153 (15%)

Query: 110 CDICDKTFVNKSHLDYH---KLSHQDLNPYECSNC-----HKGFKNKGKLNRHMKIHSDS 161
            D C + F ++  L +H   +  H +   + C         + FK +  L  HM+ H+  
Sbjct: 6   WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 65

Query: 162 K------EQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC--DICEKSFIEKNDLIKHQV 213
           K      E      C K+   +E+LK H++ H G K Y C  + C K+F   +D  KHQ 
Sbjct: 66  KPHKCTFEG-----CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN 120

Query: 214 -THSDKKIFVCEN--CGKSFKRKYDLALHIRTH 243
            THS++K +VC+   C K +     L  H++T 
Sbjct: 121 RTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 86.1 bits (214), Expect = 3e-20
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 14/123 (11%)

Query: 191 KNYHCDICEKSFIEKNDLIKH---QVTHSDKKIFVCENCG-----KSFKRKYDLALHIRT 242
            +   D C + F  +  L+ H   +  H ++K FVC   G     + FK +Y L +H+R 
Sbjct: 2   TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61

Query: 243 HFPLKRFQCKL--CDKIFFTLHNMRRHMRIHK-DRPLFECH--DCHKSFTRKDNLERHVK 297
           H   K  +C    C K +  L N++ H+R H  ++P + C    C K+F+   +  +H  
Sbjct: 62  HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKP-YMCEHEGCSKAFSNASDRAKHQN 120

Query: 298 SIH 300
             H
Sbjct: 121 RTH 123

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 73.4 bits (181), Expect = 1e-15
 Identities = 33/154 (21%), Positives = 56/154 (36%), Gaps = 20/154 (12%)

Query: 80  YKCLKCKRQFKVKYNCKYHIHCTSLKA--------KLSCDICDKTFVNKSHLDYHKLSHQ 131
            +   C ++F  +    +HI+   +             C    + F  +  L  H   H 
Sbjct: 4   CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63

Query: 132 DLNPYEC--SNCHKGFKNKGKLNRHMKIHSDSK----EQWFCKVCNKALMSVESLKKHMK 185
              P++C    C K +     L  H++ H+  K    E    + C+KA  +     KH  
Sbjct: 64  GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEH---EGCSKAFSNASDRAKHQN 120

Query: 186 -IHAGLKNYHCDI--CEKSFIEKNDLIKHQVTHS 216
             H+  K Y C +  C K + + + L KH  T  
Sbjct: 121 RTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 36/122 (29%), Positives = 47/122 (38%), Gaps = 22/122 (18%)

Query: 82  CLKCKRQFKVKYNCKYH--IH-------CTSLKAKLSCDICDKTFVNKSHLDYHKLSHQD 132
           C +  R FK +Y    H   H       CT          C K++    +L  H  SH  
Sbjct: 42  CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEG-------CRKSYSRLENLKTHLRSHTG 94

Query: 133 LNPYEC--SNCHKGFKNKGKLNRHMK-IHSDSKEQWFCKV--CNKALMSVESLKKHMKIH 187
             PY C    C K F N     +H    HS+ K  + CK+  C K      SL+KH+K  
Sbjct: 95  EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK-PYVCKLPGCTKRYTDPSSLRKHVKTV 153

Query: 188 AG 189
            G
Sbjct: 154 HG 155

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 97.6 bits (244), Expect = 9e-25
 Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 9/115 (7%)

Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK--EQWFCKVCNKALMSVESLKKHMK---IHAG 189
             EC  CHK F +K  L  H + H+  K  E   C  C K     E+L +H     ++  
Sbjct: 7   GVECPTCHKKFLSKYYLKVHNRKHTGEKPFE---CPKCGKCYFRKENLLEHEARNCMNRS 63

Query: 190 LKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALH-IRTH 243
            + + C +C+++F  + +L  H V+H+ +  + C +C + F +K DL  H I+ H
Sbjct: 64  EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 95.6 bits (239), Expect = 5e-24
 Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 3/117 (2%)

Query: 187 HAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIR---TH 243
            +G     C  C K F+ K  L  H   H+ +K F C  CGK + RK +L  H      +
Sbjct: 2   SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61

Query: 244 FPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
              + F C +C + F     +R HM  H     ++C  C + F +K +L+ H+  +H
Sbjct: 62  RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 53.3 bits (129), Expect = 4e-09
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 8/86 (9%)

Query: 80  YKCLKCKRQFKVKYNCKYH-----IHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLN 134
           ++C KC + +  K N   H     ++  S +   +C +C +TF  +  L  H +SH    
Sbjct: 36  FECPKCGKCYFRKENLLEHEARNCMN-RSEQV-FTCSVCQETFRRRMELRLHMVSHTGEM 93

Query: 135 PYECSNCHKGFKNKGKLNRHM-KIHS 159
           PY+CS+C + F  K  L  HM K+HS
Sbjct: 94  PYKCSSCSQQFMQKKDLQSHMIKLHS 119

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 96.2 bits (240), Expect = 6e-24
 Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 12/151 (7%)

Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH-------SDSKEQW 165
              +          K   +        +C + F    +L  H+ +        ++    W
Sbjct: 3   SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62

Query: 166 F-CKVCNKALMSVESLKKHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFV 222
             C    K+  +   L  H+++H G K + C    C K F    +L  H+ TH+ +K F 
Sbjct: 63  EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122

Query: 223 C--ENCGKSFKRKYDLALHIRTHFPLKRFQC 251
           C  E C + F    D   H+  H   K    
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 92.0 bits (229), Expect = 2e-22
 Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 15/140 (10%)

Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKK---------I 220
              +   ++       I     +     C+++F   ++L+ H                  
Sbjct: 3   SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62

Query: 221 FVCENCGKSFKRKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIH-KDRPLF 277
             C   GKSFK KY L  HIR H   K F C    C KIF    N++ H R H  ++P F
Sbjct: 63  EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKP-F 121

Query: 278 ECH--DCHKSFTRKDNLERH 295
           +C    C + F    + ++H
Sbjct: 122 KCEFEGCDRRFANSSDRKKH 141

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 65.0 bits (159), Expect = 8e-13
 Identities = 28/130 (21%), Positives = 42/130 (32%), Gaps = 14/130 (10%)

Query: 80  YKCLKCKRQFKVKYNCKYHI---------HCTSLKAKLSCDICDKTFVNKSHLDYHKLSH 130
                C R F   +    H+             +     C    K+F  K  L  H   H
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85

Query: 131 QDLNPYECS--NCHKGFKNKGKLNRHMKIHSDSKEQWFCKV--CNKALMSVESLKKHMKI 186
               P+ C    C K F     L  H + H+  K  + C+   C++   +    KKHM +
Sbjct: 86  TGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKP-FKCEFEGCDRRFANSSDRKKHMHV 144

Query: 187 HAGLKNYHCD 196
           H   K+    
Sbjct: 145 HTSDKSGPSS 154

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 13/86 (15%)

Query: 227 GKSFKRKYDLALHI---RTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH---------KDR 274
           G S      +   +              K CD+ F T+H +  H+ +             
Sbjct: 1   GSSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60

Query: 275 PLFECHDCHKSFTRKDNLERHVKSIH 300
              EC    KSF  K  L  H++ +H
Sbjct: 61  YWEECPREGKSFKAKYKLVNHIR-VH 85

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 92.6 bits (231), Expect = 6e-23
 Identities = 38/106 (35%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
           CNK    +  L+ H + H G K Y CD   CE+ F   + L +HQ  H+  K F C+ C 
Sbjct: 14  CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73

Query: 228 KSFKRKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIH 271
           + F R   L  H RTH   K F C+   C K F     + RH  +H
Sbjct: 74  RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 88.0 bits (219), Expect = 2e-21
 Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 9/117 (7%)

Query: 191 KNYHCD--ICEKSFIEKNDLIKHQVTHSDKKIFVCEN--CGKSFKRKYDLALHIRTHFPL 246
           + + C    C K + + + L  H   H+ +K + C+   C + F R   L  H R H  +
Sbjct: 5   RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64

Query: 247 KRFQCKLCDKIFFTLHNMRRHMRIHK-DRPLFECH--DCHKSFTRKDNLERHVKSIH 300
           K FQCK C + F    +++ H R H  ++P F C    C K F R D L RH   +H
Sbjct: 65  KPFQCKTCQRKFSRSDHLKTHTRTHTGEKP-FSCRWPSCQKKFARSDELVRHHN-MH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 59.1 bits (144), Expect = 4e-11
 Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 49/149 (32%)

Query: 80  YKC--LKCKRQFKVKYNCKYH--IH-------CTSLKAKLSCDICDKTFVNKSHLDYHKL 128
           + C    C +++    + + H   H       C           C++ F     L  H+ 
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKD-------CERRFSRSDQLKRHQR 59

Query: 129 SHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHA 188
            H  + P++C  C + F                                  LK H + H 
Sbjct: 60  RHTGVKPFQCKTCQRKFSRSD-----------------------------HLKTHTRTHT 90

Query: 189 GLKNYHCDI--CEKSFIEKNDLIKHQVTH 215
           G K + C    C+K F   ++L++H   H
Sbjct: 91  GEKPFSCRWPSCQKKFARSDELVRHHNMH 119

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 85.3 bits (212), Expect = 3e-20
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 5/109 (4%)

Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC--E 224
            K C K      +++KH+  H G + + C  C K+F+E + L +HQ+ H+ +K F C  E
Sbjct: 10  HKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFE 68

Query: 225 NCGKSFKRKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIH 271
            CGK F   ++L  H+R H   + + C    C+K F    N++ H+  H
Sbjct: 69  GCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 82.6 bits (205), Expect = 2e-19
 Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 10/117 (8%)

Query: 191 KNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKR 248
           +   C    C K F + + + KH  TH  +   VC  CGK+F     L  H   H   K 
Sbjct: 4   RTIACPHKGCTKMFRDNSAMRKHLHTHGPRV-HVCAECGKAFVESSKLKRHQLVHTGEKP 62

Query: 249 FQCKL--CDKIFFTLHNMRRHMRIH-KDRPLFECH--DCHKSFTRKDNLERHVKSIH 300
           FQC    C K F    N+R H+RIH  DRP + C    C+K F +  NL+ H+   H
Sbjct: 63  FQCTFEGCGKRFSLDFNLRTHVRIHTGDRP-YVCPFDGCNKKFAQSTNLKSHIL-TH 117

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 78.3 bits (194), Expect = 9e-18
 Identities = 34/135 (25%), Positives = 49/135 (36%), Gaps = 34/135 (25%)

Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNK 172
           C K F + S +  H  +H     + C+ C K F    KL RH  +H+             
Sbjct: 13  CTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHT------------- 58

Query: 173 ALMSVESLKKHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVC--ENCGK 228
                           G K + C    C K F    +L  H   H+  + +VC  + C K
Sbjct: 59  ----------------GEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNK 102

Query: 229 SFKRKYDLALHIRTH 243
            F +  +L  HI TH
Sbjct: 103 KFAQSTNLKSHILTH 117

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 59.1 bits (144), Expect = 5e-11
 Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 3/87 (3%)

Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN--CHKGFKNKGKLNRHMKIHSDSKE-QWF 166
           C  C K FV  S L  H+L H    P++C+   C K F     L  H++IH+  +     
Sbjct: 37  CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 96

Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNY 193
              CNK      +LK H+  HA  KN 
Sbjct: 97  FDGCNKKFAQSTNLKSHILTHAKAKNN 123

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 84.4 bits (210), Expect = 3e-20
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 5/110 (4%)

Query: 184 MKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               +G K Y C  C KSF  K+   +H   H   + + C  CGK FK K+ L  H++ H
Sbjct: 2   SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60

Query: 244 FPLKRFQCKLCDKIFFTLHNMRRHMRIHK-DRPLFECHDCHKSFTRKDNL 292
             +K ++C +C K F        H  +    +  +E     ++ T     
Sbjct: 61  TGIKPYECNICAKRFM--WRDSFHRHVTSCTKS-YEAAKAEQNTTEASGP 107

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 80.6 bits (200), Expect = 9e-19
 Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK--EQWFCKVCNKALMSVESLKKHMKIHAGLKN 192
            Y C  C K F +K + +RHM +H   +      C VC K       L  HMKIH G+K 
Sbjct: 10  LYPC-QCGKSFTHKSQRDRHMSMHLGLRPYG---CGVCGKKFKMKHHLVGHMKIHTGIKP 65

Query: 193 YHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLA 237
           Y C+IC K F+ ++    H+   S  K +      ++       +
Sbjct: 66  YECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPS 108

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 74.4 bits (184), Expect = 1e-16
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKS 229
           C K+        +HM +H GL+ Y C +C K F  K+ L+ H   H+  K + C  C K 
Sbjct: 15  CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74

Query: 230 FKRKYDLALHIRTHFPLKRFQCKLCDKIF 258
           F  +     H       K ++    ++  
Sbjct: 75  FMWRDS--FHRHVTSCTKSYEAAKAEQNT 101

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 69.8 bits (172), Expect = 5e-15
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 214 THSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHK- 272
             S  K++ C+ CGKSF  K     H+  H  L+ + C +C K F   H++  HM+IH  
Sbjct: 4   GSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62

Query: 273 DRPLFECHDCHKSFTRKDNLERHV 296
            +P +EC+ C K F  +D+  RHV
Sbjct: 63  IKP-YECNICAKRFMWRDSFHRHV 85

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 83.3 bits (207), Expect = 9e-20
 Identities = 25/93 (26%), Positives = 43/93 (46%)

Query: 179 SLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLAL 238
                       K + C  C + F +  +L+ H+ TH+D++ + C+ C K+F+R+  L  
Sbjct: 4   GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63

Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
           H   H   K F+C+ C K F     +  H  +H
Sbjct: 64  HRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 78.6 bits (195), Expect = 4e-18
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 5/106 (4%)

Query: 120 KSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK--EQWFCKVCNKALMSV 177
            S     +L  +    + C  C + F     L  H + H+D +      C +C+KA    
Sbjct: 2   SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYT---CDICHKAFRRQ 58

Query: 178 ESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
           + L+ H  IH+  K + C  C K F +   L  H+  H        
Sbjct: 59  DHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 78.2 bits (194), Expect = 5e-18
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 207 DLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRR 266
                ++    KK F+C+ CG+ F + Y+L +H RTH   + + C +C K F    ++R 
Sbjct: 4   GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63

Query: 267 HMRIH-KDRPLFECHDCHKSFTRKDNLERHVKSIH 300
           H  IH K++P F+C +C K F +   L  H K++H
Sbjct: 64  HRYIHSKEKP-FKCQECGKGFCQSRTLAVH-KTLH 96

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 51.7 bits (125), Expect = 1e-08
 Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 80  YKCLKCKRQFKVKYNCKYH--IHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYE 137
           + C  C R F   YN   H   H T  +   +CDIC K F  + HL  H+  H    P++
Sbjct: 18  FICKFCGRHFTKSYNLLIHERTH-TDERP-YTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75

Query: 138 CSNCHKGFKNKGKLNRHMKIH 158
           C  C KGF     L  H  +H
Sbjct: 76  CQECGKGFCQSRTLAVHKTLH 96

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 80.2 bits (199), Expect = 8e-19
 Identities = 27/77 (35%), Positives = 43/77 (55%)

Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENC 226
           C+VC K     + LK HM+ H G+K Y C  C+ +  + + L KH   HSD++ F C+ C
Sbjct: 11  CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70

Query: 227 GKSFKRKYDLALHIRTH 243
             + +    L +H+R+H
Sbjct: 71  PYASRNSSQLTVHLRSH 87

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 77.8 bits (193), Expect = 5e-18
 Identities = 21/85 (24%), Positives = 36/85 (42%)

Query: 187 HAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPL 246
                 + C++C K F  K+ L  H   H+  K + C+ C  +      L  H+R H   
Sbjct: 3   SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62

Query: 247 KRFQCKLCDKIFFTLHNMRRHMRIH 271
           + F+C++C         +  H+R H
Sbjct: 63  RPFKCQICPYASRNSSQLTVHLRSH 87

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 76.3 bits (189), Expect = 2e-17
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK--EQWFCKVCNKALMSVESLKKHMKIHAGLKN 192
           P++C  C K F  K KL  HM+ H+  K  +   CK C+ A     SL KH++IH+  + 
Sbjct: 8   PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYK---CKTCDYAAADSSSLNKHLRIHSDERP 64

Query: 193 YHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
           + C IC  +    + L  H  +H+       
Sbjct: 65  FKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 72.5 bits (179), Expect = 4e-16
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 214 THSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKD 273
           +        CE CGK F RK  L  H+R H  +K ++CK CD       ++ +H+RIH D
Sbjct: 2   SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61

Query: 274 RPLFECHDCHKSFTRKDNLERHVKSIH 300
              F+C  C  +      L  H    H
Sbjct: 62  ERPFKCQICPYASRNSSQLTVH-LRSH 87

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 69.4 bits (171), Expect = 5e-15
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 5/88 (5%)

Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK--EQWFC 167
           C++C K F  K  L  H   H  + PY+C  C     +   LN+H++IHSD +  +   C
Sbjct: 11  CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK---C 67

Query: 168 KVCNKALMSVESLKKHMKIHAGLKNYHC 195
           ++C  A  +   L  H++ H G      
Sbjct: 68  QICPYASRNSSQLTVHLRSHTGDSGPSS 95

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 79.8 bits (198), Expect = 1e-18
 Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 215 HSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH--- 271
            S      CE CGK F+  Y L  H  +H   K + C +C   F     M  H+R H   
Sbjct: 2   SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61

Query: 272 KDRPLFECHDCHKSFTRKDNLERHVKSIH 300
             +P + C  C K F+R D+L  H+K +H
Sbjct: 62  VGKP-YICQSCGKGFSRPDHLNGHIKQVH 89

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 71.4 bits (176), Expect = 1e-15
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHS--DKKIFVCE 224
           C++C K    V  L +H   H+G K Y C +C   F  K+ +  H  +H     K ++C+
Sbjct: 10  CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69

Query: 225 NCGKSFKRKYDLALHI-RTH 243
           +CGK F R   L  HI + H
Sbjct: 70  SCGKGFSRPDHLNGHIKQVH 89

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 63.3 bits (155), Expect = 6e-13
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWF-CK 168
           C+IC K F +  HL+ HKLSH    PY C  C   FK K +++ H++ H  S  + + C+
Sbjct: 10  CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69

Query: 169 VCNKALMSVESLKKHMK-IHAGLK 191
            C K     + L  H+K +H+G  
Sbjct: 70  SCGKGFSRPDHLNGHIKQVHSGPS 93

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 77.1 bits (191), Expect = 7e-18
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 191 KNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKR 248
           + Y C +  C++ F +   L +H   H+ +K F C  C ++F R   L  HIRTH   K 
Sbjct: 3   RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62

Query: 249 FQCKLCDKIFFTLHNMRRHMRIH 271
           F C +C + F      +RH +IH
Sbjct: 63  FACDICGRKFARSDERKRHTKIH 85

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 76.4 bits (189), Expect = 2e-17
 Identities = 25/74 (33%), Positives = 40/74 (54%)

Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKS 229
           C++      SL +H++IH G K + C IC ++F   + L  H  TH+ +K F C+ CG+ 
Sbjct: 12  CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71

Query: 230 FKRKYDLALHIRTH 243
           F R  +   H + H
Sbjct: 72  FARSDERKRHTKIH 85

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 72.9 bits (180), Expect = 2e-16
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 5/88 (5%)

Query: 135 PYECSN--CHKGFKNKGKLNRHMKIHSDSKEQWF-CKVCNKALMSVESLKKHMKIHAGLK 191
           PY C    C + F   G L RH++IH+   ++ F C++C +     + L  H++ H G K
Sbjct: 4   PYACPVESCDRRFSQSGSLTRHIRIHTG--QKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 192 NYHCDICEKSFIEKNDLIKHQVTHSDKK 219
            + CDIC + F   ++  +H   H  +K
Sbjct: 62  PFACDICGRKFARSDERKRHTKIHLRQK 89

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 69.4 bits (171), Expect = 4e-15
 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 224 ENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
           E+C + F +   L  HIR H   K FQC++C + F    ++  H+R H     F C  C 
Sbjct: 10  ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69

Query: 284 KSFTRKDNLERHVKSIH 300
           + F R D  +RH K IH
Sbjct: 70  RKFARSDERKRHTK-IH 85

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 62.9 bits (154), Expect = 9e-13
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)

Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNK 172
           CD+ F     L  H   H    P++C  C + F     L  H++ H+  K  + C +C +
Sbjct: 12  CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK-PFACDICGR 70

Query: 173 ALMSVESLKKHMKIHAGLKN 192
                +  K+H KIH   K+
Sbjct: 71  KFARSDERKRHTKIHLRQKD 90

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 54.4 bits (132), Expect = 7e-10
 Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 80  YKCLK--CKRQFKVKYNCKYH--IHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNP 135
           Y C    C R+F    +   H  IH T  K    C IC + F    HL  H  +H    P
Sbjct: 5   YACPVESCDRRFSQSGSLTRHIRIH-TGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKP 62

Query: 136 YECSNCHKGFKNKGKLNRHMKIHSDSKE 163
           + C  C + F    +  RH KIH   K+
Sbjct: 63  FACDICGRKFARSDERKRHTKIHLRQKD 90

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 76.8 bits (190), Expect = 8e-18
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 179 SLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHS--DKKIFVCENCGKSFKRKYDL 236
           S     + H+G K Y C IC   F +   +  H +     +   F C +C     RK DL
Sbjct: 2   SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61

Query: 237 ALHIRTH 243
            +H+R  
Sbjct: 62  GVHLRKQ 68

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 67.2 bits (165), Expect = 2e-14
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 236 LALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH---KDRPLFECHDCHKSFTRKDNL 292
                RTH   K ++C +C   F     M+ H+           F C  C     RK +L
Sbjct: 3   SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAK-FHCPHCDTVIARKSDL 61

Query: 293 ERHVKSIH 300
             H++  H
Sbjct: 62  GVHLRKQH 69

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 52.9 bits (128), Expect = 2e-09
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 109 SCDICDKTFVNKSHLDYHKLSH--QDLNPYECSNCHKGFKNKGKLNRHM-KIHSDSK 162
            C IC   F     +  H L    +++  + C +C      K  L  H+ K HS S 
Sbjct: 17  ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSG 73

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 42.9 bits (102), Expect = 7e-06
 Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 263 NMRRHMRIH-KDRPLFECHDCHKSFTRKDNLERHVKSIH 300
           +     R H  ++P +EC+ CH  FT+   ++ H+    
Sbjct: 2   SSGSSGRTHSGEKP-YECYICHARFTQSGTMKMHIL-QK 38

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 40.6 bits (96), Expect = 5e-05
 Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 80  YKCLKCKRQFKVKYNCKYH--IHCTSLKAKLSCDICDKTFVNKSHLDYH 126
           Y+C  C  +F      K H     T   AK  C  CD     KS L  H
Sbjct: 16  YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 75.9 bits (188), Expect = 2e-17
 Identities = 28/77 (36%), Positives = 43/77 (55%)

Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENC 226
           CK+C K+     +L  H+ IH+  + Y C  C K F +K+D+ KH   H+ +K   C+ C
Sbjct: 4   CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63

Query: 227 GKSFKRKYDLALHIRTH 243
           GK+F +  +L  H R H
Sbjct: 64  GKAFSQSSNLITHSRKH 80

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 71.7 bits (177), Expect = 5e-16
 Identities = 29/79 (36%), Positives = 41/79 (51%)

Query: 193 YHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK 252
           + C IC KSF   + L  H + HSD + + C+ CGK F +K D+  H   H   K  +C+
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61

Query: 253 LCDKIFFTLHNMRRHMRIH 271
           +C K F    N+  H R H
Sbjct: 62  VCGKAFSQSSNLITHSRKH 80

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 64.4 bits (158), Expect = 2e-13
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 3/81 (3%)

Query: 221 FVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH-KDRPLFEC 279
           F C+ CGKSFKR   L+ H+  H   + + C+ C K F    +M++H  IH  ++P  +C
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP-HKC 60

Query: 280 HDCHKSFTRKDNLERHVKSIH 300
             C K+F++  NL  H    H
Sbjct: 61  QVCGKAFSQSSNLITH-SRKH 80

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 61.7 bits (151), Expect = 2e-12
 Identities = 31/82 (37%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK--EQWFC 167
           C IC K+F   S L  H L H D  PY C  C K F  K  + +H  IH+  K  +   C
Sbjct: 4   CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK---C 60

Query: 168 KVCNKALMSVESLKKHMKIHAG 189
           +VC KA     +L  H + H G
Sbjct: 61  QVCGKAFSQSSNLITHSRKHTG 82

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 76.0 bits (188), Expect = 2e-17
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 1/81 (1%)

Query: 219 KIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFE 278
           K F C  C ++F R   L  HIRTH   K F C +C + F      +RH  I    P   
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILP-IL 60

Query: 279 CHDCHKSFTRKDNLERHVKSI 299
                +  ++  +LE  V  +
Sbjct: 61  EDKVEELLSKNYHLENEVARL 81

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 74.5 bits (184), Expect = 7e-17
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 190 LKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRF 249
           +K + C IC ++F   + L  H  TH+ +K F C+ CG+ F R  +   H      +   
Sbjct: 1   MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPI 59

Query: 250 QCKLCDKIF---FTLHNMRRHMRIH 271
                +++    + L N    ++  
Sbjct: 60  LEDKVEELLSKNYHLENEVARLKKL 84

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 72.9 bits (180), Expect = 3e-16
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENC 226
           C++C +     + L  H++ H G K + CDIC + F   ++  +H+         + +  
Sbjct: 6   CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILP-ILEDKV 64

Query: 227 GKSFKRKYDLALHI---RTH 243
            +   + Y L   +   +  
Sbjct: 65  EELLSKNYHLENEVARLKKL 84

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 58.7 bits (143), Expect = 2e-11
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 7/86 (8%)

Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWF-CK 168
           C IC + F    HL  H  +H    P+ C  C + F    +  RH  I            
Sbjct: 6   CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH---ILPILED 62

Query: 169 VCNKA---LMSVESLKKHMKIHAGLK 191
              +       +E+    +K   G +
Sbjct: 63  KVEELLSKNYHLENEVARLKKLVGER 88

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 46.3 bits (111), Expect = 5e-07
 Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 8/84 (9%)

Query: 80  YKCLKCKRQFKVKYNCKYH--IHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYE 137
           ++C  C R F    +   H   H T  K   +CDIC + F        H+     L P  
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTH-TGEKP-FACDICGRKFARSDERKRHRDIQHIL-PIL 60

Query: 138 CSNCHKGFKNKGKL---NRHMKIH 158
                +       L      +K  
Sbjct: 61  EDKVEELLSKNYHLENEVARLKKL 84

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 76.1 bits (188), Expect = 2e-17
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 179 SLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC--ENCGKSFKRKYDL 236
              +  +IH          C K + + + L  H  TH+ +K + C  E C   F R  +L
Sbjct: 8   PDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDEL 63

Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKD 273
             H R H   K FQC +C++ F    ++  HM+ H++
Sbjct: 64  TRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 72.3 bits (178), Expect = 5e-16
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 12/102 (11%)

Query: 201 SFIEKNDLIKHQVTHSDKKIFVCE--NCGKSFKRKYDLALHIRTHFPLKRFQCKL--CDK 256
           S       ++       ++I  C+   C K + +   L  H+RTH   K ++C    CD 
Sbjct: 2   SSGSSGPDLEK------RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDW 55

Query: 257 IFFTLHNMRRHMRIH-KDRPLFECHDCHKSFTRKDNLERHVK 297
            F     + RH R H   +P F+C  C++SF+R D+L  H+K
Sbjct: 56  RFARSDELTRHYRKHTGAKP-FQCGVCNRSFSRSDHLALHMK 96

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 135 PYECS--NCHKGFKNKGKLNRHMKIHSDSKE---QWFCKVCNKALMSVESLKKHMKIHAG 189
            + C    C K +     L  H++ H+  K     W  + C+      + L +H + H G
Sbjct: 15  IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTW--EGCDWRFARSDELTRHYRKHTG 72

Query: 190 LKNYHCDICEKSFIEKNDLIKHQVTHSD 217
            K + C +C +SF   + L  H   H +
Sbjct: 73  AKPFQCGVCNRSFSRSDHLALHMKRHQN 100

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 15/48 (31%), Positives = 20/48 (41%)

Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSD 160
           CD  F     L  H   H    P++C  C++ F     L  HMK H +
Sbjct: 53  CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 75.3 bits (186), Expect = 4e-17
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 2/87 (2%)

Query: 187 HAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC--ENCGKSFKRKYDLALHIRTHF 244
                      C K++ + + L  H  TH+ +K + C  + CG  F R  +L  H R H 
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61

Query: 245 PLKRFQCKLCDKIFFTLHNMRRHMRIH 271
             + FQC+ CD+ F    ++  HM+ H
Sbjct: 62  GHRPFQCQKCDRAFSRSDHLALHMKRH 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 73.7 bits (182), Expect = 1e-16
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 215 HSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIH- 271
            +         CGK++ +   L  H+RTH   K + C    C   F     + RH R H 
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61

Query: 272 KDRPLFECHDCHKSFTRKDNLERHVKSIHL 301
             RP F+C  C ++F+R D+L  H+K  H 
Sbjct: 62  GHRP-FQCQKCDRAFSRSDHLALHMK-RHF 89

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 71.0 bits (175), Expect = 1e-15
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCE 224
              C K       LK H++ H G K YHCD   C   F   ++L +H   H+  + F C+
Sbjct: 10  YAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ 69

Query: 225 NCGKSFKRKYDLALHIRTHF 244
            C ++F R   LALH++ HF
Sbjct: 70  KCDRAFSRSDHLALHMKRHF 89

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 43.3 bits (103), Expect = 7e-06
 Identities = 14/46 (30%), Positives = 17/46 (36%)

Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
           C   F     L  H   H    P++C  C + F     L  HMK H
Sbjct: 43  CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 72.9 bits (180), Expect = 2e-16
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 208 LIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH----FPLKRFQCKLCDKIFFTLHN 263
                 TH+ +K + C +C K+F++K  L +H + +    F    F C  C K F   + 
Sbjct: 3   SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62

Query: 264 MRRHMRIHKDRPLFECHDCHKSF 286
           M RH          E  +   S 
Sbjct: 63  MARHADNCAGPDGVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 69.1 bits (170), Expect = 5e-15
 Identities = 23/109 (21%), Positives = 35/109 (32%), Gaps = 25/109 (22%)

Query: 122 HLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLK 181
                  +H    PY CS+C K F+ K  L+ H K + D                     
Sbjct: 2   SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD--------------------- 40

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSF 230
                +     + C  C K+F  +N + +H    +       EN G S 
Sbjct: 41  ----PNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 54.8 bits (133), Expect = 5e-10
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 9/70 (12%)

Query: 110 CDICDKTFVNKSHLDYHKLSH----QDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK--E 163
           C  CDKTF  K  LD H   +         + CS C K F  +  + RH    +     E
Sbjct: 18  CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVE 77

Query: 164 QWFCKVCNKA 173
               +    +
Sbjct: 78  ---GENSGPS 84

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 6/71 (8%)

Query: 80  YKCLKCKRQFKVKYNCKYH--IH---CTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLN 134
           Y C  C + F+ K     H   +        A   C  C KTF  ++ +  H  +    +
Sbjct: 16  YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA-FVCSKCGKTFTRRNTMARHADNCAGPD 74

Query: 135 PYECSNCHKGF 145
             E  N     
Sbjct: 75  GVEGENSGPSS 85

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 69.8 bits (172), Expect = 2e-15
 Identities = 22/65 (33%), Positives = 30/65 (46%)

Query: 179 SLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLAL 238
               H  +    K Y CD C+ SF  K +L  H+  H+ +K + C  CG  F R  +L  
Sbjct: 4   HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63

Query: 239 HIRTH 243
           H R H
Sbjct: 64  HTRIH 68

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 59.8 bits (146), Expect = 6e-12
 Identities = 20/64 (31%), Positives = 29/64 (45%)

Query: 208 LIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRH 267
              H       K + C+ C  SF+ K +LA H   H   K ++C +C   F    N++ H
Sbjct: 5   HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64

Query: 268 MRIH 271
            RIH
Sbjct: 65  TRIH 68

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 55.5 bits (135), Expect = 2e-10
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 121 SHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESL 180
            H  +H        PY+C  C   F+ KG L  H  +H+  K  + C +C        +L
Sbjct: 3   HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANL 61

Query: 181 KKHMKIHAGLKNY 193
           K H +IH+G K Y
Sbjct: 62  KTHTRIHSGEKPY 74

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 55.2 bits (134), Expect = 3e-10
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 151 LNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIK 210
            + H  +    K  + C  C  +     +L  H  +H G K Y C+IC   F    +L  
Sbjct: 5   HHHHSHMTHSDKP-YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63

Query: 211 HQVTHSDKK 219
           H   HS +K
Sbjct: 64  HTRIHSGEK 72

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 49.4 bits (119), Expect = 3e-08
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 236 LALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERH 295
              H       K ++C  C   F    N+  H  +H     + C+ C   F R  NL+ H
Sbjct: 5   HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64

Query: 296 VKSIH 300
              IH
Sbjct: 65  -TRIH 68

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 69.0 bits (170), Expect = 4e-15
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 179 SLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLAL 238
           S  +        + Y CD C KSF   +DL KH+ TH+ +K + C+ CGK+F ++  L  
Sbjct: 5   SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64

Query: 239 HIRTH 243
           H R H
Sbjct: 65  HHRVH 69

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 52.8 bits (128), Expect = 2e-09
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 148 KGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKND 207
            G   R      + + ++ C  C K+      L KH + H G K Y CD C K+FI+++ 
Sbjct: 3   SGSSGRSEWQQRERR-RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH 61

Query: 208 LIKHQVTH 215
           LI H   H
Sbjct: 62  LIGHHRVH 69

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 47.4 bits (114), Expect = 2e-07
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 29/94 (30%)

Query: 207 DLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRR 266
              + +    +++ + C+ CGKSF    DL+ H RTH                T      
Sbjct: 5   SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH----------------T------ 42

Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
                 ++P ++C +C K+F ++ +L  H   +H
Sbjct: 43  -----GEKP-YKCDECGKAFIQRSHLIGH-HRVH 69

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 45.9 bits (110), Expect = 5e-07
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
           CD C K+F + S L  H+ +H    PY+C  C K F  +  L  H ++H
Sbjct: 21  CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 68.4 bits (168), Expect = 7e-15
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 220 IFVC--ENCGKSFKRKYDLALHIRTHFPLKRFQCK--LCDKIFFTLHNMRRHMRIHKDRP 275
           ++VC  ENCGK+FK+   L +H  +H     ++C    CDK F     ++RH ++H   P
Sbjct: 1   MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60

Query: 276 LFECHDCHKSFTRKDNLERHVKSIH 300
             +   C           +HV   H
Sbjct: 61  CKKDDSCSFVGKTWTLYLKHVAECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 60.7 bits (148), Expect = 5e-12
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 7/85 (8%)

Query: 193 YHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVC--ENCGKSFKRKYDLALHIRTHFPLKR 248
           Y C    C K+F + N L  HQ +H+ +  + C  E C K F     L  H + H     
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61

Query: 249 FQCKLCDKIF--FTLHNMRRHMRIH 271
            +   C  +   +TL+ ++     H
Sbjct: 62  KKDDSCSFVGKTWTLY-LKHVAECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 3/80 (3%)

Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCD--ICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
            + C KA      LK H   H     Y C    C+K F   + L +H+  H+       +
Sbjct: 6   FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDD 65

Query: 225 NCGKSFKRKYDLALHI-RTH 243
           +C    K       H+   H
Sbjct: 66  SCSFVGKTWTLYLKHVAECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 27/108 (25%), Positives = 35/108 (32%), Gaps = 28/108 (25%)

Query: 109 SCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCK 168
             + C K F   + L  H+ SH    PYEC   H+G                        
Sbjct: 5   HFENCGKAFKKHNQLKVHQFSHTQQLPYECP--HEG------------------------ 38

Query: 169 VCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQV-TH 215
            C+K       LK+H K+HAG      D C          +KH    H
Sbjct: 39  -CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 6/83 (7%)

Query: 79  MYKCL--KCKRQFKVKYNCKYH--IHCTSLKA-KLSCDICDKTFVNKSHLDYHKLSHQDL 133
           MY C    C + FK     K H   H T     +   + CDK F   S L  H+  H   
Sbjct: 1   MYVCHFENCGKAFKKHNQLKVHQFSH-TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 59

Query: 134 NPYECSNCHKGFKNKGKLNRHMK 156
              +  +C    K      +H+ 
Sbjct: 60  PCKKDDSCSFVGKTWTLYLKHVA 82

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 66.7 bits (164), Expect = 3e-14
 Identities = 23/64 (35%), Positives = 33/64 (51%)

Query: 180 LKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALH 239
                 IH+G K Y C  C K+F   + L++HQ  H+ +K + C  CGK+F +   L  H
Sbjct: 2   SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61

Query: 240 IRTH 243
            R H
Sbjct: 62  QRIH 65

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 54.4 bits (132), Expect = 6e-10
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 151 LNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIK 210
            +    IHS  K  + C  C KA      L +H ++H G K Y C  C K+F + + LI 
Sbjct: 2   SSGSSGIHSGEKP-YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLIN 60

Query: 211 HQVTHSDKK 219
           HQ  H+   
Sbjct: 61  HQRIHTSGP 69

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 47.5 bits (114), Expect = 1e-07
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 31/94 (32%)

Query: 208 LIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRH 267
                  HS +K + C  CGK+F R   L                             +H
Sbjct: 2   SSGSSGIHSGEKPYGCVECGKAFSRSSILV----------------------------QH 33

Query: 268 MRIHK-DRPLFECHDCHKSFTRKDNLERHVKSIH 300
            R+H  ++P ++C +C K+F++   L  H + IH
Sbjct: 34  QRVHTGEKP-YKCLECGKAFSQNSGLINH-QRIH 65

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 45.9 bits (110), Expect = 5e-07
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNY 193
           PY C  C K F     L +H ++H+  K  + C  C KA      L  H +IH    + 
Sbjct: 14  PYGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINHQRIHTSGPSS 71

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 66.7 bits (163), Expect = 3e-14
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 187 HAGLKNYHCDICEKSFIEKNDLIKHQVTHSDK---KIFVCENCGKSFKRKYDLALHIRTH 243
            +G     C+IC  +  +K  L  HQ  H++      F CE CGK F++   +A H    
Sbjct: 2   SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61

Query: 244 FPLKRFQCKLCDK 256
            P      +    
Sbjct: 62  HPALLLAPQESSG 74

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 65.1 bits (159), Expect = 1e-13
 Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 3/71 (4%)

Query: 215 HSDKKIFVCENCGKSFKRKYDLALHIRTHFPL---KRFQCKLCDKIFFTLHNMRRHMRIH 271
            S      CE CG + ++K  L  H R H       RF C+ C K F    ++  H    
Sbjct: 2   SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61

Query: 272 KDRPLFECHDC 282
               L    + 
Sbjct: 62  HPALLLAPQES 72

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 59.7 bits (145), Expect = 9e-12
 Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 27/97 (27%)

Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYH 194
             +C  C    + K  LN H + H+++                               + 
Sbjct: 7   GLQCEICGFTCRQKASLNWHQRKHAETV--------------------------AALRFP 40

Query: 195 CDICEKSFIEKNDLIKHQVT-HSDKKIFVCENCGKSF 230
           C+ C K F + + +  H+   H    +   E+ G S 
Sbjct: 41  CEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSS 77

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 57.8 bits (140), Expect = 4e-11
 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 3/63 (4%)

Query: 247 KRFQCKLCDKIFFTLHNMRRHMRIHKDRPL---FECHDCHKSFTRKDNLERHVKSIHLED 303
              QC++C        ++  H R H +      F C  C K F + D++  H    H   
Sbjct: 6   SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65

Query: 304 PSE 306
              
Sbjct: 66  LLA 68

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 3/65 (4%)

Query: 80  YKCLKCKRQFKVKYNCKYH--IHCTSLKAK-LSCDICDKTFVNKSHLDYHKLSHQDLNPY 136
            +C  C    + K +  +H   H  ++ A    C+ C K F     +  H+         
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67

Query: 137 ECSNC 141
                
Sbjct: 68  APQES 72

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 65.9 bits (160), Expect = 1e-13
 Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 5/99 (5%)

Query: 179 SLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQ-----VTHSDKKIFVCENCGKSFKRK 233
           S K +  I  G   + C  C  ++    +L  H          + +         S  RK
Sbjct: 6   SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65

Query: 234 YDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHK 272
             L          K  +C  C   F +L ++  HM   K
Sbjct: 66  RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 59.8 bits (144), Expect = 2e-11
 Identities = 13/100 (13%), Positives = 32/100 (32%), Gaps = 6/100 (6%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIR-----THFPLKRFQCKLCDKIFFTLHNMR 265
           +    +    F C++C  ++    +L +H+           +               ++ 
Sbjct: 10  YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLL 69

Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERH-VKSIHLEDP 304
                   + + +C  C  SF    +L  H +K+ H +  
Sbjct: 70  EMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKV 109

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 55.9 bits (134), Expect = 5e-10
 Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 24/123 (19%)

Query: 121 SHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESL 180
           S    +       + + C +C   +    +L  HM                         
Sbjct: 5   SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNET---------------------- 42

Query: 181 KKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHI 240
             H +     +  + +    S   K  L++ +     +K+  C  CG SF+   DL++H+
Sbjct: 43  -GHYR-DDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHM 100

Query: 241 RTH 243
              
Sbjct: 101 IKT 103

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 44.4 bits (104), Expect = 5e-06
 Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 5/89 (5%)

Query: 80  YKCLKCKRQFKVKYNCKYHIHCT-----SLKAKLSCDICDKTFVNKSHLDYHKLSHQDLN 134
           ++C  C   +        H++ T           + +    +   K  L   +       
Sbjct: 20  FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK 79

Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSKE 163
             +C  C   F++   L+ HM      ++
Sbjct: 80  VLKCMYCGHSFESLQDLSVHMIKTKHYQK 108

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 14/84 (16%), Positives = 20/84 (23%), Gaps = 6/84 (7%)

Query: 107 KLSCDICDKTFVNKSHLDYH-----KLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDS 161
           K  C  C   +     L  H          +      +        K  L          
Sbjct: 19  KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ 78

Query: 162 KEQWFCKVCNKALMSVESLKKHMK 185
           K    C  C  +  S++ L  HM 
Sbjct: 79  KV-LKCMYCGHSFESLQDLSVHMI 101

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 61.8 bits (151), Expect = 1e-12
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 241 RTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHK---DRPLFECHDCHKSFTRKDNLERHVK 297
            T      ++CK+C +++  + N  RH         +  + C  C K FTRKDN+  HVK
Sbjct: 3   FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV-YPCPFCFKEFTRKDNMTAHVK 61

Query: 298 SIH 300
            IH
Sbjct: 62  IIH 64

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 61.4 bits (150), Expect = 1e-12
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 186 IHAGLKNYHCDICEKSFIEKNDLIKHQVT--HSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              G   Y C +C + +   ++  +H VT    + K++ C  C K F RK ++  H++  
Sbjct: 4   TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 59.5 bits (145), Expect = 8e-12
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 212 QVTHSDKKIFVCENCGKSFKRKYDLALHIRT--HFPLKRFQCKLCDKIFFTLHNMRRHMR 269
           + T   +  + C+ C + +    +   H  T     +K + C  C K F    NM  H++
Sbjct: 2   EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61

Query: 270 IH 271
           I 
Sbjct: 62  II 63

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 54.1 bits (131), Expect = 6e-10
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 110 CDICDKTFVNKSHLDYHKLS--HQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
           C +C + + + S+   H ++   +++  Y C  C K F  K  +  H+KI 
Sbjct: 13  CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 49.5 bits (119), Expect = 3e-08
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSKEQWF-CKVCNKALMSVESLKKHMKIHAGL 190
            Y C  C + + +     RH         + + C  C K     +++  H+KI   +
Sbjct: 10  TYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 61.8 bits (151), Expect = 1e-12
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 187 HAGLKNYHCDI--CEKSFIEKNDLIKHQ-VTHSDKKIFVCE--NCGKSFKRKYDLALHIR 241
            +G     CD   C + F  +  L  H+   H  +K F C    CGKSF  K  L  H++
Sbjct: 2   SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61

Query: 242 THFPLKRFQCKLCDKIF 258
            H   + + C+      
Sbjct: 62  LHSDTRDYICEFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 60.6 bits (148), Expect = 4e-12
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 170 CNKALMSVESLKKHMKI-HAGLKNYHCD--ICEKSFIEKNDLIKHQVTHSDKKIFVCENC 226
           C +   + + L  H K  H   K++ C    C KSF  K  L +H   HSD + ++CE  
Sbjct: 15  CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74

Query: 227 GKSF 230
           G S 
Sbjct: 75  GPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 56.8 bits (138), Expect = 8e-11
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 7/78 (8%)

Query: 215 HSDKKIFVC--ENCGKSFKRKYDLALHIR-THFPLKRFQCK--LCDKIFFTLHNMRRHMR 269
            S      C    CG+ F  +  L  H +  H   K F C    C K F    +++ HM+
Sbjct: 2   SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61

Query: 270 IHK-DRPLFECHDCHKSF 286
           +H   R  + C     S 
Sbjct: 62  LHSDTRD-YICEFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 51.8 bits (125), Expect = 6e-09
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 113 CDKTFVNKSHLDYHK-LSHQDLNPYECS--NCHKGFKNKGKLNRHMKIHSDSKEQWFCKV 169
           C + F N+ +L++HK   H     + C    C K F  K  L  HMK+HSD++  + C+ 
Sbjct: 15  CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR-DYICEF 73

Query: 170 CNKA 173
              +
Sbjct: 74  SGPS 77

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 8/60 (13%)

Query: 247 KRFQCKL--CDKIFFTLHNMRRHMRIH--KDRPLFEC--HDCHKSFTRKDNLERHVKSIH 300
               C    C +IF     +  H +      +  F C    C KSF  K +L+ H+K +H
Sbjct: 6   SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS-FSCPEPACGKSFNFKKHLKEHMK-LH 63

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 80  YKCLK--CKRQFKVKYNCKYHIHCTSLKAK-LSCD--ICDKTFVNKSHLDYHKLSHQDLN 134
             C    C R F  +    +H     +  K  SC    C K+F  K HL  H   H D  
Sbjct: 8   MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67

Query: 135 PYECSNCHKGF 145
            Y C       
Sbjct: 68  DYICEFSGPSS 78

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 61.0 bits (149), Expect = 3e-12
 Identities = 13/57 (22%), Positives = 21/57 (36%)

Query: 187 HAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
            +      C  C  S   K  L  H+  H   + F C  C    K+  +L+ H++  
Sbjct: 4   GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 57.9 bits (141), Expect = 3e-11
 Identities = 15/58 (25%), Positives = 22/58 (37%)

Query: 214 THSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
           + S      C  C  S   K  L +H R H   + F+C  C        N+ +HM+  
Sbjct: 3   SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 54.0 bits (131), Expect = 7e-10
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
           C  C  +  +K+ L  H+  H    P++C+ C    K    L++HMK  
Sbjct: 12  CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 52.9 bits (128), Expect = 2e-09
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENC 226
           C  C+ +  S  +L+ H +IH   + + C+ C     + ++L KH             + 
Sbjct: 12  CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDM--SGPSS 69

Query: 227 G 227
           G
Sbjct: 70  G 70

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 49.0 bits (118), Expect = 4e-08
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 241 RTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH-KDRPLFECHDCHKSFTRKDNLERHVKSI 299
            +       +C  C     +   +R H RIH  DRP F+C+ C     +  NL +H+K  
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMK-K 59

Query: 300 H 300
            
Sbjct: 60  F 60

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 57.3 bits (139), Expect = 4e-11
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 206 NDLIKHQVTHSDKKIFVC--ENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHN 263
           N+L+ + V     + + C  E+C + F R  +L  HIR H   K FQC++C + F    +
Sbjct: 7   NNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDH 64

Query: 264 MRRHMRIH 271
           +  H+R H
Sbjct: 65  LTTHIRTH 72

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 180 LKKHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLA 237
           L  ++      + Y C +  C++ F   ++L +H   H+ +K F C  C ++F R   L 
Sbjct: 9   LLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66

Query: 238 LHIRTH 243
            HIRTH
Sbjct: 67  THIRTH 72

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 51.2 bits (123), Expect = 8e-09
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 6/65 (9%)

Query: 236 LALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIH-KDRPLFECHDCHKSFTRKDNL 292
           L  ++     ++ + C +  CD+ F     + RH+RIH   +P F+C  C ++F+R D+L
Sbjct: 9   LLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHL 65

Query: 293 ERHVK 297
             H++
Sbjct: 66  TTHIR 70

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 121 SHLDYHKLSHQDLNPYECS--NCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVE 178
           ++L  + +      PY C   +C + F    +L RH++IH+  K  + C++C +     +
Sbjct: 7   NNLLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRIHTGQK-PFQCRICMRNFSRSD 63

Query: 179 SLKKHMKIH 187
            L  H++ H
Sbjct: 64  HLTTHIRTH 72

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 154 HMKIHSDSKEQWF-CKV--CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIK 210
           ++  +   K + + C V  C++     + L +H++IH G K + C IC ++F   + L  
Sbjct: 8   NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67

Query: 211 HQVTHS 216
           H  TH+
Sbjct: 68  HIRTHT 73

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 13/47 (27%), Positives = 20/47 (42%)

Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHS 159
           CD+ F     L  H   H    P++C  C + F     L  H++ H+
Sbjct: 27  CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 56.3 bits (137), Expect = 7e-11
 Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 247 KRFQCKLCDKIFFTLHNMRRHMRIH-KDRPLFECHDCHKSFTRKDNLERHVKSIH 300
           + F C++C + F    +++RH R H  ++P + C  C+++FTR+D L RH + IH
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHAQKIH 54

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 52.1 bits (126), Expect = 3e-09
 Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHI-RTH 243
           +++ C++C ++F  +  L +H  +H+++K + C  C ++F R+  L  H  + H
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 48.3 bits (116), Expect = 6e-08
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHM-KIHS 159
           C++C + F  + HL  H  SH +  PY C  C++ F  +  L RH  KIHS
Sbjct: 5   CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKH-QVTHS 216
           C+VC +A    E LK+H + H   K Y C +C ++F  ++ LI+H Q  HS
Sbjct: 5   CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 55.7 bits (134), Expect = 4e-10
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 9/75 (12%)

Query: 186 IHAGLKNYHCDICEKSFIEKNDLIKHQ----VTHSDKKIFVCE-----NCGKSFKRKYDL 236
           I     +     C+++F   ++L+ H     V   ++   VC        GKSFK KY L
Sbjct: 19  IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78

Query: 237 ALHIRTHFPLKRFQC 251
             HIR H   K    
Sbjct: 79  VNHIRVHTGEKSGPS 93

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 46.1 bits (109), Expect = 8e-07
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 8/74 (10%)

Query: 130 HQDLNPYECSNCHKGFKNKGKLNRHM-KIHSDSKEQ------WF-CKVCNKALMSVESLK 181
            +        +C + F    +L  H+   H    EQ      W  C    K+  +   L 
Sbjct: 20  DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79

Query: 182 KHMKIHAGLKNYHC 195
            H+++H G K+   
Sbjct: 80  NHIRVHTGEKSGPS 93

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 43.0 bits (101), Expect = 9e-06
 Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 11/76 (14%)

Query: 214 THSDKKIFVCENCGKSFKRKYDLALHI-RTHFPLKRFQ--------CKLCDKIFFTLHNM 264
               +     ++C ++F   ++L  H+   H               C    K F   + +
Sbjct: 19  IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78

Query: 265 RRHMRIH-KDRPLFEC 279
             H+R+H  ++     
Sbjct: 79  VNHIRVHTGEKS-GPS 93

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 9/60 (15%)

Query: 109 SCDICDKTFVNKSHLDYH-KLSHQDLNPY--------ECSNCHKGFKNKGKLNRHMKIHS 159
               CD+TF     L  H  + H              EC    K FK K KL  H+++H+
Sbjct: 27  PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 54.9 bits (131), Expect = 1e-09
 Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 217 DKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPL 276
           +K+++ C  C        +   H R         C  C   FF+    + H    + +  
Sbjct: 13  NKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHESKCEYKK- 69

Query: 277 FECHDCHKSFTRKDNLERHVKSIHLED---PSENTNT 310
             C +C ++F    ++ RH   +H ++   P+   ++
Sbjct: 70  LTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTSGPSS 106

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 48.0 bits (113), Expect = 3e-07
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 3/91 (3%)

Query: 149 GKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDL 208
           G          ++KE + C++CN  L S+     H ++        C  C   F      
Sbjct: 1   GSSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELK 58

Query: 209 IKHQVTHSDKKIFVCENCGKSFKRKYDLALH 239
            +H+     KK   C  C ++FK  + +  H
Sbjct: 59  QEHESKCEYKK-LTCLECMRTFKSSFSIWRH 88

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 41.4 bits (96), Expect = 6e-05
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYH 194
            Y+C  C+    +  +   H ++  ++     C  C+    S E  ++H +     K   
Sbjct: 16  VYQCRLCNAKLSSLLEQGSHERLCRNAAV---CPYCSLRFFSPELKQEH-ESKCEYKKLT 71

Query: 195 CDICEKSFIEKNDLIKHQVT-HSDKKIFVCEN 225
           C  C ++F     + +HQV  H+   +     
Sbjct: 72  CLECMRTFKSSFSIWRHQVEVHNQNNMAPTSG 103

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 40.7 bits (94), Expect = 9e-05
 Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 3/77 (3%)

Query: 80  YKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
           Y+C  C  +         H      +    C  C   F +      H+   +      C 
Sbjct: 17  YQCRLCNAKLSSLLEQGSHER--LCRNAAVCPYCSLRFFSPELKQEHESKCEY-KKLTCL 73

Query: 140 NCHKGFKNKGKLNRHMK 156
            C + FK+   + RH  
Sbjct: 74  ECMRTFKSSFSIWRHQV 90

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 210 KHQVTHSDKKIFVC--ENCGKSFKRKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMR 265
             Q+  S  +  +C    CGK++ +   L  H RTH   K F C    C++ F     + 
Sbjct: 7   GPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELS 66

Query: 266 RHMRIH 271
           RH R H
Sbjct: 67  RHRRTH 72

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 179 SLKKHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVC--ENCGKSFKRKY 234
                    + ++++ C    C K++ + + L  H  TH+ +K F C  + C + F R  
Sbjct: 4   GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63

Query: 235 DLALHIRTH 243
           +L+ H RTH
Sbjct: 64  ELSRHRRTH 72

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 239 HIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIHK-DRPLFECH--DCHKSFTRKDNLE 293
                  ++   C    C K +F   +++ H R H  ++P F C    C + F R D L 
Sbjct: 8   PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKP-FSCSWKGCERRFARSDELS 66

Query: 294 RHVKS 298
           RH ++
Sbjct: 67  RHRRT 71

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 110 CDI--CDKTFVNKSHLDYHKLSHQDLNPYECS--NCHKGFKNKGKLNRHMKIH 158
           C    C KT+   SHL  H  +H    P+ CS   C + F    +L+RH + H
Sbjct: 20  CSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTH 215
           C K       LK H + H G K + C    CE+ F   ++L +H+ TH
Sbjct: 25  CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 50.4 bits (120), Expect = 2e-08
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 7/68 (10%)

Query: 176 SVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYD 235
           S  S  K  KIH G ++  C  C   FI        + T S +K  +CE C K   ++  
Sbjct: 2   SSGSSGKRQKIHLGDRSQKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQEAA 54

Query: 236 LALHIRTH 243
           L       
Sbjct: 55  LNKDEGNE 62

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 43.5 bits (102), Expect = 4e-06
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 8/71 (11%)

Query: 149 GKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDL 208
           G   +  KIH   + Q  C  C    +   +L +        K   C+ C K   ++  L
Sbjct: 4   GSSGKRQKIHLGDRSQ-KCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAAL 55

Query: 209 IKHQVTHSDKK 219
            K +   S KK
Sbjct: 56  NKDEGNESGKK 66

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 42.0 bits (98), Expect = 1e-05
 Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 7/64 (10%)

Query: 208 LIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRH 267
             K Q  H   +   C  CG  F R+  L+         K   C+ C K       + + 
Sbjct: 6   SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKD 58

Query: 268 MRIH 271
               
Sbjct: 59  EGNE 62

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 39.6 bits (92), Expect = 9e-05
 Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 8/73 (10%)

Query: 121 SHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESL 180
                 +  H      +CS C   F  +  L+R         +   C+ C K      +L
Sbjct: 4   GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR--------KTPMCEKCRKDSCQEAAL 55

Query: 181 KKHMKIHAGLKNY 193
            K     +G K  
Sbjct: 56  NKDEGNESGKKTS 68

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 47.4 bits (112), Expect = 1e-07
 Identities = 18/56 (32%), Positives = 29/56 (51%)

Query: 193 YHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKR 248
           Y C+ C     + + L KH  TH+D + + C  C  SFK K +L  H+++    K+
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 47.0 bits (111), Expect = 1e-07
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 221 FVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
           ++CE CG   K+   L  HIRTH  ++ + C  C+  F T  N+ +HM+  
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 46.6 bits (110), Expect = 2e-07
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
           C+ C         LKKH++ H  ++ YHC  C  SF  K +L KH  + +  K
Sbjct: 4   CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 45.5 bits (107), Expect = 5e-07
 Identities = 21/53 (39%), Positives = 28/53 (52%)

Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
           C+ C       S L  H  +H D+ PY C+ C+  FK KG L +HMK  + SK
Sbjct: 4   CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 40.1 bits (93), Expect = 5e-05
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 248 RFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKS 298
           ++ C+ C         +++H+R H D   + C  C+ SF  K NL +H+KS
Sbjct: 1   KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 136 YECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLK 191
           Y C  C    K    L +H++ H+D +  + C  CN +  +  +L KHMK  A  K
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKSKAHSK 56

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 49.2 bits (116), Expect = 2e-07
 Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 6/121 (4%)

Query: 180 LKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALH 239
            KK++  H G+      +  +     + L   Q     + I            +      
Sbjct: 10  SKKYLSNHKGIF---IHVTLEELKRYHQLTPEQ-KRLIRAIVKTLIHNPQLLDESSYLYR 65

Query: 240 IRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSI 299
           +     + +F C LC   F +  ++++H+R  +      C  C K FT  D+   HV   
Sbjct: 66  LLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHT--KVCPVCKKEFTSTDSALDHVCKK 123

Query: 300 H 300
           H
Sbjct: 124 H 124

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 44.2 bits (103), Expect = 8e-06
 Identities = 20/104 (19%), Positives = 31/104 (29%), Gaps = 3/104 (2%)

Query: 166 FCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
           F  V  + L     L    K           I     ++++  +   +       FVC  
Sbjct: 21  FIHVTLEELKRYHQLTPEQKRLIRAIVKTL-IHNPQLLDESSYLYRLLASKAISQFVCPL 79

Query: 226 CGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMR 269
           C   F     L  HIR         C +C K F +  +   H+ 
Sbjct: 80  CLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVC 121

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 41.1 bits (95), Expect = 9e-05
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 112 ICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCN 171
           I +   +++S   Y  L+ + ++ + C  C   F +   L +H++    +K    C VC 
Sbjct: 51  IHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV---CPVCK 107

Query: 172 KALMSVESLKKHM-KIHAG 189
           K   S +S   H+ K H  
Sbjct: 108 KEFTSTDSALDHVCKKHNI 126

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
                  G+K Y C  C K+F  K+ LI HQ +H+  K     + G
Sbjct: 2   SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP-SSG 46

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 41.7 bits (99), Expect = 9e-06
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
               + +  K + C  C K+F  K  L +H R+H  +K    
Sbjct: 2   SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 5e-07
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
                 G K + CDIC KSF  ++ L +H + H+ +K     + G
Sbjct: 3   SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP-SSG 46

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              + + +K F C+ CGKSF  +  L  H   H
Sbjct: 3   SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 8e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
              S     P++C  C K F  + +LNRH  +H
Sbjct: 3   SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.5 bits (106), Expect = 9e-07
 Identities = 16/43 (37%), Positives = 20/43 (46%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
                AG K Y C  C K+F  K+ LI H  THS +K     +
Sbjct: 3   SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
              + + +K + C  CGK+F  K  L +H+RTH   K    
Sbjct: 3   SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 14/42 (33%), Positives = 18/42 (42%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                  G K Y C  C KSFI+K+ L  HQ  H+ +     
Sbjct: 2   SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               + + +K + C +CGKSF +K  L +H R H
Sbjct: 2   SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKH-QVTHSDKKIFVCENCGKSF 230
                +  K Y C  C K F   + L  H +  H+ ++   C+      
Sbjct: 3   SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHI-RTHFPLKRFQCKLCDKIF 258
              + S  K ++C++CGK F R   L  HI + H   +  +C++     
Sbjct: 3   SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 14/77 (18%), Positives = 21/77 (27%), Gaps = 28/77 (36%)

Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMK 185
              S     PY C +C KGF     LN H+K                            +
Sbjct: 3   SGSSGSVGKPYICQSCGKGFSRPDHLNGHIK----------------------------Q 34

Query: 186 IHAGLKNYHCDICEKSF 202
           +H   + + C +     
Sbjct: 35  VHTSERPHKCQVWVSGP 51

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
                  G ++Y C  C K+F  K+ LI HQ  H+ +K     + G
Sbjct: 2   SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP-SSG 46

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               + + ++ + C  CGK+F RK  L +H R H
Sbjct: 2   SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
                +G K + C+ C K F   +    HQ +HS +K     + G
Sbjct: 3   SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP-SSG 46

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              + S +K F CE CGK F        H R+H
Sbjct: 3   SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
                 G   + C  C K F  K +LI HQ  H+ ++     + G
Sbjct: 3   SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP-SSG 46

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              + + +  F+C  CGK F  K +L +H + H
Sbjct: 3   SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
                 G K Y C+ C K FI + DL  H + H+ +K     +
Sbjct: 3   SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              + + +K + CE CGK F  + DL  H   H
Sbjct: 3   SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.6 bits (104), Expect = 2e-06
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
                 G K + C  C+K+F  K++LI HQ TH+ +K     
Sbjct: 3   SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.5 bits (96), Expect = 2e-05
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
              + + +K F C  C K+F  K +L +H RTH   K    
Sbjct: 3   SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 15/42 (35%), Positives = 19/42 (45%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                  G K Y C IC KSF +K+ L  HQ  H+ +K    
Sbjct: 2   SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 6e-05
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               + + +K + C  CGKSF +K  L +H + H
Sbjct: 2   SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 13/41 (31%), Positives = 17/41 (41%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                 G K Y C  C KSF  K+ L  HQ  H+ ++    
Sbjct: 3   SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              + + +K + C +CGKSF  K  L +H + H
Sbjct: 3   SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 43.2 bits (103), Expect = 2e-06
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                  G+K Y C+ C K+F  K+ LI H  TH+ +     
Sbjct: 2   SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 42.1 bits (100), Expect = 6e-06
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
               + +  K +VC  CGK+F+ K  L +H RTH        
Sbjct: 2   SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
                 +G K Y C  C K +  + DL  HQ  H+ +K+    + G
Sbjct: 2   SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP-SSG 46

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.1 bits (100), Expect = 6e-06
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               + S +K + C  CGK +KR+ DL  H R H
Sbjct: 2   SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                +G K Y C+ C K+FI K+ LI H+ TH+       
Sbjct: 3   SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 39.1 bits (92), Expect = 8e-05
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              + S +K + C  CGK+F  K  L +H RTH
Sbjct: 3   SGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                  G + Y C  C K+F  K+ LI H+ +H+ +K    
Sbjct: 2   SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK 252
               + + ++ + C  CGK+FK K  L  H R+H   K     
Sbjct: 2   SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 43.2 bits (103), Expect = 2e-06
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                 G K Y C+ C+K+F  K++L+ HQ TH+ +     
Sbjct: 3   SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
              + + +K + C  C K+F  K +L +H RTH        
Sbjct: 3   SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
                  G K Y C+ C KSFI+K+ L +H+  H+ +K     
Sbjct: 2   SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               + + +K ++C  CGKSF +K  L  H R H
Sbjct: 2   SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
                 G K Y C  C K+F  +++LIKHQ  H+ +K     
Sbjct: 3   SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              + + +K ++C  CGK+F  + +L  H + H
Sbjct: 3   SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.2 bits (103), Expect = 2e-06
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
                 G + Y C +C K+F ++++LIKHQ  H+ +K     + G
Sbjct: 3   SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP-SSG 46

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 8/33 (24%), Positives = 18/33 (54%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              + + ++ ++C  CGK+F  + +L  H + H
Sbjct: 3   SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                  G ++Y C  C K+FI+K+ L  HQ  H  +K    
Sbjct: 2   SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 8e-05
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               + + ++ + C  CGK+F +K  L++H R H
Sbjct: 2   SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 14/44 (31%), Positives = 18/44 (40%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
                  G K Y C +C K+F  +  L  HQ  HS KK     +
Sbjct: 2   SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               + + +K + C  CGK+F  +  L++H R H
Sbjct: 2   SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 12/43 (27%), Positives = 16/43 (37%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
                  G K + C  C KSF   + L  HQ  H+ +K     
Sbjct: 2   SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 39.8 bits (94), Expect = 5e-05
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               + + +K F C  CGKSF     LA H R H
Sbjct: 2   SSGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
                  G K Y C +C K+F +K  L +HQ TH+ +K     
Sbjct: 2   SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK 252
               + + +K + C+ C K+F +K  LA H +TH   K     
Sbjct: 2   SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
                  G K Y+C+ C K+FI  + L +HQ  H+ +K     
Sbjct: 2   SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               + + +K + CE CGK+F     L  H R H
Sbjct: 2   SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
                  G K Y C  C K+F  K+ L  HQ +H+ ++     +
Sbjct: 2   SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS 45

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               + + +K + C +CGK+F RK  L +H ++H
Sbjct: 2   SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
                 G K Y C  C K+F ++++L  HQ  H+ +K     
Sbjct: 3   SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              + + +K + C  CGK+F  + +L  H + H
Sbjct: 3   SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.9 bits (102), Expect = 4e-06
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
                  G K Y C+ C K+F  ++ L  HQ THS +K     + G
Sbjct: 2   SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP-SSG 46

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.7 bits (91), Expect = 9e-05
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
               + + +K + C  CGK+F+ +  LA+H  TH   K    
Sbjct: 2   SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.9 bits (102), Expect = 4e-06
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
                +G K Y C+ C K+F +K+ L  HQ TH+ +K     
Sbjct: 3   SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              + S +K + C  CGK+F +K  L+ H RTH
Sbjct: 3   SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                 G K + C  C KSF  K +L+ HQ  H+ +K    
Sbjct: 3   SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
              + + +K F C +CGKSF+ K +L  H R H   K    
Sbjct: 3   SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
                 G K Y CD+C K+F     L +HQ  HS +K     +
Sbjct: 3   SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 42.7 bits (101), Expect = 4e-06
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 211 HQVTHSDKKIFVC--ENCGKSFKRKYDLALHIRTHFPLKRFQC 251
              + + +K F C    CG  F R  +L+ H R+H  +K    
Sbjct: 3   SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 183 HMKIHAGLKNYHCD--ICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
                 G K + C    C   F   ++L +H+ +HS  K     +
Sbjct: 3   SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.5 bits (101), Expect = 5e-06
 Identities = 10/44 (22%), Positives = 19/44 (43%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
                  G K Y C++C K+F+    L +H   H+ + +    +
Sbjct: 2   SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 10/43 (23%), Positives = 16/43 (37%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK 252
               + + +K + C  CGK+F     L  H+R H         
Sbjct: 2   SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 9e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
              S     PY C+ C K F     LN+H+++H
Sbjct: 3   SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.5 bits (101), Expect = 5e-06
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
                 +G K Y CD C K+F    +L++HQ  H+ +K     + G
Sbjct: 2   SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP-SSG 46

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 6e-05
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               + S +K +VC+ CGK+F    +L  H R H
Sbjct: 2   SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.5 bits (101), Expect = 5e-06
 Identities = 12/42 (28%), Positives = 16/42 (38%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                  G K + C  C KSF   + LI HQ  H+ +     
Sbjct: 2   SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               + + +K   C  CGKSF     L +H R H
Sbjct: 2   SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.1 bits (100), Expect = 5e-06
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
                AG K + C+ C+K+F + + L  HQ  H+ +K     + G
Sbjct: 3   SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP-SSG 46

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              + + KK+F C  C K+F +   L +H R H
Sbjct: 3   SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 42.1 bits (100), Expect = 6e-06
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              +   +K + CE CG  F+    L  H+R H
Sbjct: 2   SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 135 PYECSNCHKGFKNKGKLNRHMKIH 158
           PY C  C   F++   L  H++IH
Sbjct: 11  PYPCEICGTRFRHLQTLKSHLRIH 34

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 10/33 (30%), Positives = 11/33 (33%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTH 215
                 G K Y C+IC   F     L  H   H
Sbjct: 2   SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
              +    K + C++C   F  L  ++ H+RIH
Sbjct: 2   SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.2 bits (100), Expect = 6e-06
 Identities = 15/41 (36%), Positives = 17/41 (41%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                 G K   C  C K+F  K+ LI HQ TH D K    
Sbjct: 3   SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
              + + +K   C  CGK+F  K  L +H RTH   K    
Sbjct: 3   SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 12/37 (32%), Positives = 16/37 (43%)

Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
              S     P +C+ C K F  K +L  H + H D K
Sbjct: 3   SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDK 39

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 42.2 bits (100), Expect = 7e-06
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
                +G K++ CD C K+F   + L  HQ  H  +K     
Sbjct: 3   SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 38.7 bits (91), Expect = 9e-05
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              + S +K   C+ CGK+F     L +H R H
Sbjct: 3   SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.1 bits (100), Expect = 7e-06
 Identities = 11/42 (26%), Positives = 17/42 (40%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                  G K Y C+ C K +  K +L  HQ  H+ ++    
Sbjct: 2   SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               + + +K + CE CGK +  K++L +H + H
Sbjct: 2   SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.1 bits (100), Expect = 7e-06
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
                  G K Y C+ C K+F + + L +HQ  H+ +K     + G
Sbjct: 2   SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP-SSG 46

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 12/42 (28%), Positives = 17/42 (40%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
               + +  K + C  CGK+F +   LA H R H   K    
Sbjct: 2   SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.7 bits (99), Expect = 7e-06
 Identities = 13/43 (30%), Positives = 18/43 (41%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
                  G K Y C+ C K+F  ++ L  HQ  H+ KK     
Sbjct: 2   SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 10/43 (23%), Positives = 16/43 (37%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK 252
               + + +K + C  CGK+F  +  L  H   H   K     
Sbjct: 2   SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.7 bits (99), Expect = 7e-06
 Identities = 12/44 (27%), Positives = 17/44 (38%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
                  G K Y C+ C K F + + L  HQ  H+  K     +
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSS 45

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               + + +K + C  CGK F +   LA H R H
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.7 bits (99), Expect = 8e-06
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
                  G K Y C+ C K+F + + L +HQ  H+ +K     + G
Sbjct: 2   SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP-SSG 46

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               + + +K + C  CGK+F +   LA H R H
Sbjct: 2   SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.7 bits (99), Expect = 8e-06
 Identities = 14/41 (34%), Positives = 17/41 (41%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                 G   Y C  C K+F  K  LI HQ TH+ +K    
Sbjct: 3   SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              + + +  + C  CGK+F RKY L  H RTH
Sbjct: 3   SGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 41.4 bits (98), Expect = 9e-06
 Identities = 13/37 (35%), Positives = 16/37 (43%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
                 G K Y CD C K+F +K  LI H   H+   
Sbjct: 2   SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSG 38

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              +   +K + C+ CGK+F +K  L +HIR H
Sbjct: 2   SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
              S     PY C  C K F  KG L  H+++H+ S 
Sbjct: 2   SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSG 38

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.8 bits (99), Expect = 9e-06
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              + + +K F C+ CG +F     L  H+R+H
Sbjct: 3   SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 9/37 (24%), Positives = 12/37 (32%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
                 G K + C  C  +F     L KH  +H    
Sbjct: 3   SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTD 39

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.7 bits (99), Expect = 9e-06
 Identities = 11/43 (25%), Positives = 19/43 (44%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
                +G + Y C+ C K+F   + LI+H   H  +K     +
Sbjct: 3   SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
              + S ++ + C  CGK+F R   L  H++ HF  K    
Sbjct: 3   SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 10/42 (23%), Positives = 15/42 (35%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                  G K + C  C K F  ++ L  H   H+ +K    
Sbjct: 2   SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               + + +K F C  CGK F R+  L +H + H
Sbjct: 2   SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 98

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 247 KRFQCKLCDKIFF-TLHNMRRHMRI-HKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDP 304
               C  C+ +   TL  +++HM +  K +   +C  C K F  K  L  H  + H   P
Sbjct: 23  GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82

Query: 305 S 305
           S
Sbjct: 83  S 83

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 185 KIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
              +G K + C  CEK+F  K+ L+ HQ TH+++K     +
Sbjct: 3   SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 36.4 bits (85), Expect = 8e-04
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 214 THSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
             S +K F C  C K+F  K  L +H +TH   K    
Sbjct: 4   GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
           C  C+K F +KS+L  H+ +H +  P   S+
Sbjct: 13  CSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
                 G K++ C  C K+F  K+ L  HQ  H+ +K     
Sbjct: 3   SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 8e-05
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              + +  K F C  CGK+F RK  L++H + H
Sbjct: 3   SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              + S +K + CE+CGK + R+ +L +H R H
Sbjct: 3   SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                +  K Y C+ C K +  + +L  HQ  H  +K    
Sbjct: 3   SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 5e-04
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
              S     PY+C +C KG+  +  L+ H ++H
Sbjct: 3   SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 15/41 (36%), Positives = 19/41 (46%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                AG+  Y C  CEKSF  K  L+ HQ  H+ +K    
Sbjct: 3   SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              + +    + C  C KSF  K  L +H R H
Sbjct: 3   SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
              S   +NPY+CS C K F  K +L  H ++H
Sbjct: 3   SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
                  G K Y C+ C K F + + L +H+  H+ +K     
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               + + +K + C  CGK F +   LA H   H
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
                 G K Y CD+C K F + + L  HQ  H+ +K     +
Sbjct: 3   SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 11/41 (26%), Positives = 16/41 (39%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
              +   +K + C+ CGK F +   L  H R H   K    
Sbjct: 3   SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 13/42 (30%), Positives = 16/42 (38%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                  G   Y C  C K F  K+ L+ HQ THS +     
Sbjct: 2   SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               + + +  + C  CGK F RK  L  H +TH
Sbjct: 2   SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 15/37 (40%), Positives = 16/37 (43%)

Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
              S    NPYEC  C K F  K +L  H K HS   
Sbjct: 3   SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQS 39

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                +G K + C+ C K F + + L  HQ  H+ +K    
Sbjct: 3   SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              + S +K F CE CGK F +   L  H R H
Sbjct: 3   SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
                 G + + C+ C KSFI+   LI+HQ  H+ +K     
Sbjct: 3   SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              + + ++   C  CGKSF +   L  H R H
Sbjct: 3   SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                  G + + C  C K F++ ++ I+H+  H+ +K    
Sbjct: 2   SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 8/34 (23%), Positives = 14/34 (41%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               +   ++   C +CGK F +  +   H R H
Sbjct: 2   SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 36.7 bits (86), Expect = 6e-04
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
              S      + CS+C K F       +H +IH
Sbjct: 3   SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
                 G K Y+C  C KSF     L+KH+  HS +K     +
Sbjct: 3   SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSS 45

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              + + +K++ C+ CGKSF R   L  H R H
Sbjct: 3   SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 11/43 (25%), Positives = 17/43 (39%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
                  G K Y C+ C K F + + L +H+  H+  K     
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               + + +K + C  CGK F +   LA H R H
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
                  G K + C  C K+F +   L +H+  H+ +K     
Sbjct: 2   SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               + + +K F C +CGK+F     L  H R H
Sbjct: 2   SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
                  G+K Y C+ C K+F   + L  HQV H+ +K     
Sbjct: 2   SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 10/42 (23%), Positives = 15/42 (35%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
               + +  K ++C  CGK+F     L  H   H   K    
Sbjct: 2   SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 15/42 (35%), Positives = 19/42 (45%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
                 G K Y+C  C KSF   + L+KHQ  HS +K     
Sbjct: 3   SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK 252
              + + +K + C+ CGKSF+    L  H R H   K     
Sbjct: 3   SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 96

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 247 KRFQCKLCDKIFF-TLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPS 305
               C  C  +   T+  +++HM   K    F CH C K       ++ HV + H   PS
Sbjct: 33  GSVSCPTCQAVGRKTIEGLKKHMENCKQEM-FTCHHCGKQLRSLAGMKYHVMANHNSLPS 91

Query: 306 ENT 308
             +
Sbjct: 92  GPS 94

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
                  G K Y C  C K+F +   LI+HQ  H+ +K     + G
Sbjct: 2   SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP-SSG 46

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
               + + +K + C+ CGK+F +   L  H R H   K    
Sbjct: 2   SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                  G K + C  C KS+ ++  L +HQ  H+ +K    
Sbjct: 2   SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 7e-05
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
               + + +K F C  CGKS+ ++  L  H R H   K    
Sbjct: 2   SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
                 G K Y C  C K+F +K +L +HQ  H+ +K     + G
Sbjct: 3   SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP-SSG 46

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              + + +K + C  CGK+F +K +L  H R H
Sbjct: 3   SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 14/41 (34%), Positives = 18/41 (43%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                 G K Y CD+C KSF   + L  HQ  H+ +K    
Sbjct: 3   SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              + + +K + C+ C KSF+    L +H R H
Sbjct: 3   SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 109 SCDICDKTFVNKSHLDYHKLSHQDLNPYECSNC 141
           +C+IC K F +  HL+ HKLSH    PY     
Sbjct: 14  ACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 39.9 bits (93), Expect = 4e-05
 Identities = 12/41 (29%), Positives = 17/41 (41%)

Query: 214 THSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC 254
           +   +K   CE CGK F+  Y L  H  +H   K +     
Sbjct: 6   SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 39.2 bits (91), Expect = 8e-05
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 187 HAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENC 226
               K   C+IC K F +   L +H+++HS +K +     
Sbjct: 7   GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
                 G K Y C+ C K+F   ++L  HQV H+ +K     
Sbjct: 3   SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 7e-04
 Identities = 10/41 (24%), Positives = 17/41 (41%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
              + + +K + C  CGK+F+   +L  H   H   K    
Sbjct: 3   SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 11/44 (25%), Positives = 19/44 (43%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
                  G K Y C +C K+F   + L++H   HS ++     +
Sbjct: 2   SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 64/461 (13%), Positives = 117/461 (25%), Gaps = 127/461 (27%)

Query: 12  VCSESRLVQDSCGHI------KCR-----------MCLLSDSTQCYLCWQKNEHASFIIE 54
           VC   ++       I       C            +    D         +++H+S I  
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT----SRSDHSSNIKL 225

Query: 55  APESDKDEK---FTIPDYIQVIPGEPVMYKCL---------KCKRQFKVKYNCK------ 96
              S + E         Y            CL         K    F +   CK      
Sbjct: 226 RIHSIQAELRRLLKSKPYE----------NCLLVLLNVQNAKAWNAFNLS--CKILLTTR 273

Query: 97  -------------YHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQ--DLNPYECSNC 141
                         HI        L+ D      +         L  +    NP   S  
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 142 HKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKAL-MSVESLKKHMKIHAGLKNYHCDICEK 200
                   +  R      D+ +   C      +  S+  L+      A  +     +   
Sbjct: 334 -------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP-----AEYRKMFDRL--- 378

Query: 201 SFIEKNDLIKHQV--------THSDKKIFVCENCGKS--FKRKYDLALHIRTHFPLKRFQ 250
           S    +  I   +          SD  + V +    S   K+  +  + I         +
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--PSIYLELK 436

Query: 251 CKLCDKIFFTLHN-MRRHMRIHKDRPLFECHDCHKSFTRKDN-----LERHVKSIHLEDP 304
            KL ++  + LH  +  H  I K    F+  D        D      +  H+K+I   + 
Sbjct: 437 VKLENE--YALHRSIVDHYNIPKT---FDSDDLIPP--YLDQYFYSHIGHHLKNIEHPER 489

Query: 305 SENTNTINGHLA-IEPKEDRINGIEPRESKIIGILA--------IEPKESIDEIVANELK 355
                 +      +E K    +        I+  L         I   +   E + N + 
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549

Query: 356 QSSSNGLLPIEPAPKSSYQNCVRNGSPEKVQVPFNNKVSVI 396
               + L  IE       +N + +   + +++    +   I
Sbjct: 550 ----DFLPKIE-------ENLICSKYTDLLRIALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 62/451 (13%), Positives = 127/451 (28%), Gaps = 115/451 (25%)

Query: 2   EQCPQCKGLVVCSESRLVQD-SCGHIKCRMCLLSDSTQCYLCWQKNEHASFIIEAPESDK 60
           E   Q K ++   E   V +  C  +        D  +  L     E    II + ++  
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDCKDV-------QDMPKSIL---SKEEIDHIIMSKDAVS 62

Query: 61  D----------------EKFTI----PDY------IQVIPGEP----VMYKCLKCKRQFK 90
                            +KF       +Y      I+    +P     MY   + +    
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 91  VKYNCKYHI----HCTSLKAKLSCDI------------CDKT-FVNKSHLDYHKLSHQDL 133
            +   KY++        L+  L                  KT       L Y      D 
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 134 NPY-----ECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHA 188
             +      C++     +   KL   +    D          +   + + S++  ++   
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQI----DPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 189 GLKNY-HC-----DICEKSFIEKNDL-IKHQVTHSDKKIFVCENCGKSFKRKYDLALHIR 241
             K Y +C     ++         +L  K  +T   K++               L+    
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT------------DFLSAATT 286

Query: 242 THFPLKRFQCKLCDK----IFFTLHNMRRHM---RIHKDRPLF------ECHD--CHKSF 286
           TH  L      L       +     + R       +    P           D       
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 287 TRKDNLERHVK----SIHLEDPSENTNTINGHLAIEPKEDRINGIEPRESKIIGILAIEP 342
            +  N ++       S+++ +P+E     +  L++ P    I    P  + ++ ++  + 
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFD-RLSVFPPSAHI----P--TILLSLIWFDV 399

Query: 343 KESIDEIVANELKQSSSNGLLPIEPAPKSSY 373
            +S   +V N+L + S   L+  +P   +  
Sbjct: 400 IKSDVMVVVNKLHKYS---LVEKQPKESTIS 427

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
               + S ++ F C  CGK F R+  LA H+R H   K    
Sbjct: 2   SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 10/44 (22%), Positives = 18/44 (40%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
                 +G + + C+ C K F  ++ L  H   HS +K     +
Sbjct: 2   SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS 45

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
                  G K Y C+ C K F   + L +HQ  H+ +K     +
Sbjct: 2   SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 11/42 (26%), Positives = 17/42 (40%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
               + + +K + C  CGK F R   L+ H + H   K    
Sbjct: 2   SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                 +G K + C+ C K F + + L  HQ  H+ +K    
Sbjct: 2   SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.1 bits (92), Expect = 8e-05
 Identities = 14/42 (33%), Positives = 17/42 (40%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
               + S +K F CE CGK F +   L  H R H   K    
Sbjct: 2   SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 11/42 (26%), Positives = 17/42 (40%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                    K+Y+C+ C K+F     L +HQ  H+ K     
Sbjct: 2   SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 39.5 bits (93), Expect = 4e-05
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               + +D K + C  CGK+F R + L  H + H
Sbjct: 2   SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 36.0 bits (84), Expect = 9e-04
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHS 159
              S  D   Y C+ C K F     L RH KIH+
Sbjct: 3   SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT 36

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 185 KIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
              +G   Y C  C K+F  K+ LI HQ TH+ +     
Sbjct: 3   SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 212 QVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               S +  + C  CGK+F RK  L  H RTH
Sbjct: 2   SSGSSGENPYECSECGKAFNRKDQLISHQRTH 33

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
                 +G K + C  C K+F +   L  H   H+ +K     + G
Sbjct: 2   SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP-SSG 46

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
               + S +K F C+ CGK+F++   LA H+R H   K    
Sbjct: 2   SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
                 AG   + C  C++ F ++N L++H+ TH+ K 
Sbjct: 2   SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKS 39

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQ 164
              S    NP++CS C + F  +  L +H + H+     
Sbjct: 3   SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 36.8 bits (85), Expect = 5e-04
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               + + +  F C  C + F ++  L  H RTH
Sbjct: 2   SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
                 G K Y C+ C K F + + L +H+  H+ +K     + G
Sbjct: 3   SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP-SSG 46

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
                 G K Y C+ C K F + + L++H+  H+ +K     + G
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP-SSG 46

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 7e-04
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              + + +K + C  CGK F +   L  H   H
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 12/42 (28%), Positives = 17/42 (40%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
                 G K Y C+ C K F   + L +HQ  H+ +K     
Sbjct: 3   SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 11/41 (26%), Positives = 17/41 (41%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
              + + +K + C  CGK F+    L+ H R H   K    
Sbjct: 3   SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 11/43 (25%), Positives = 19/43 (44%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
                 +G K Y C  C K+FI+   L +H+  H+ ++     
Sbjct: 2   SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 5e-05
 Identities = 11/43 (25%), Positives = 17/43 (39%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK 252
               + S KK + C+ C K+F +   L  H R H   +     
Sbjct: 2   SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHS 159
              S     PYEC  C K F   G LN+H ++H+
Sbjct: 3   SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHT 36

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 13/44 (29%), Positives = 18/44 (40%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
                  G K Y C  C KSF     L +H +TH+ +K     +
Sbjct: 2   SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSS 45

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.1 bits (92), Expect = 8e-05
 Identities = 12/34 (35%), Positives = 15/34 (44%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               +   +K + C  CGKSF   Y L  H  TH
Sbjct: 2   SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
              S      ++C  C +GF  K  LN+H +IH
Sbjct: 3   SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 39.1 bits (92), Expect = 8e-05
 Identities = 10/42 (23%), Positives = 18/42 (42%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                 +  K++ C  C + F  K+ L +HQ  H+ +K    
Sbjct: 2   SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 38.7 bits (91), Expect = 9e-05
 Identities = 11/34 (32%), Positives = 13/34 (38%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               + S  K   C  CG+ F  K  L  H R H
Sbjct: 2   SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.9 bits (94), Expect = 4e-05
 Identities = 10/42 (23%), Positives = 17/42 (40%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
                 G K Y C  C K+F + +   +HQ  H+ ++     
Sbjct: 3   SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 39.0 bits (92), Expect = 7e-05
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              +   +K + CE CG  F +   L  H+  H
Sbjct: 2   SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 39.0 bits (92), Expect = 7e-05
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTH 215
                 G K Y C+ C   F++   L  H + H
Sbjct: 2   SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 10/33 (30%), Positives = 12/33 (36%)

Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
              S     PY+C  C   F     L  H+ IH
Sbjct: 2   SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 36.3 bits (85), Expect = 7e-04
 Identities = 8/33 (24%), Positives = 16/33 (48%)

Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
              +    K ++C+ C   F  + ++R H+ IH
Sbjct: 2   SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 39.1 bits (92), Expect = 7e-05
 Identities = 8/33 (24%), Positives = 12/33 (36%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              +   +K + C  C   F +   L LH   H
Sbjct: 3   SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 10/41 (24%), Positives = 15/41 (36%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                 G K + C  C+  F + + L  HQ  H  +K    
Sbjct: 3   SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 39.1 bits (92), Expect = 8e-05
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQ-VTHSDKKIFVC 223
                 G K Y C  C K+FI+   LI+H    H+ +K    
Sbjct: 3   SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 8e-05
 Identities = 11/41 (26%), Positives = 17/41 (41%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
                +G K Y C+ C K F + + L  H   H+ +K    
Sbjct: 3   SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 38.8 bits (91), Expect = 8e-05
 Identities = 11/28 (39%), Positives = 13/28 (46%)

Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
           PY C  C K F  +G L  H +  S S 
Sbjct: 11  PYLCGQCGKSFTQRGSLAVHQRSCSQSG 38

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 11/37 (29%), Positives = 14/37 (37%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
                 G   Y C  C KSF ++  L  HQ + S   
Sbjct: 2   SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSG 38

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
              +   +  ++C  CGKSF ++  LA+H R+ 
Sbjct: 2   SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 Length = 47

 Score = 39.1 bits (91), Expect = 9e-05
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 209 IKHQVTHSDKKIFVC--ENCGKSFKRKYDLALHIRTH 243
           I   V     K F C    C K+FKR+Y++  HI+TH
Sbjct: 7   IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 10/43 (23%), Positives = 16/43 (37%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
                 +G K Y C  C K+F     L +H+  H+  +     
Sbjct: 2   SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
               + S +K + C  CGK+F R   L  H R H
Sbjct: 2   SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
                +  K F C +C +SF R   LALH + H
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 35.8 bits (83), Expect = 8e-04
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTH 215
             +   G+K + C  C++SF   + L  H+  H
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 12/43 (27%), Positives = 17/43 (39%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
                  G K Y C  C K F   + L +HQ+ H+ +K     
Sbjct: 2   SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 6e-04
 Identities = 12/42 (28%), Positives = 17/42 (40%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
               + + +K + C  CGK F+R   LA H   H   K    
Sbjct: 2   SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 102

 Score = 39.0 bits (90), Expect = 3e-04
 Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 4/75 (5%)

Query: 175 MSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVT-HSD---KKIFVCENCGKSF 230
           M+      + +       Y C  C     + N    H  + H +      +VC  C    
Sbjct: 1   MAHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60

Query: 231 KRKYDLALHIRTHFP 245
           KR   L+ H   + P
Sbjct: 61  KRYDALSEHNLKYHP 75

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 102

 Score = 37.8 bits (87), Expect = 9e-04
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 4/71 (5%)

Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRI-HKD---RPLFECHDCHKSFTRKDNLER 294
           + +       ++CK C      L+    H+   H +      + C +C+    R D L  
Sbjct: 9   NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68

Query: 295 HVKSIHLEDPS 305
           H    H  + +
Sbjct: 69  HNLKYHPGEEN 79

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
            YEC  C K F+ KG L  H +IH+ S 
Sbjct: 10  VYECQECGKSFRQKGSLTLHERIHTGSG 37

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	440
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.97
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.97
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.95
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.94
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.9
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.89
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.89
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.88
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.88
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.88
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.88
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.88
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.87
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.87
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.79
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.79
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.78
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.77
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.77
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.77
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.77
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.76
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.76
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.76
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.75
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.75
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.74
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.73
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.72
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.7
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.68
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.68
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.67
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.67
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.66
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.65
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.64
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.64
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.64
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.62
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.61
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.58
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.57
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.57
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.57
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.55
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.54
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.53
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.53
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.52
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.5
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.5
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.5
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.49
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.48
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.48
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.48
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.47
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.47
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.46
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.46
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.46
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.45
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.45
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.44
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.43
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.42
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.42
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.42
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.4
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.39
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.39
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.38
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.33
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.3
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.3
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.28
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.28
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.26
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.19
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.15
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.15
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.15
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.15
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.15
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.14
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.14
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.14
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.13
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.13
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.13
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.13
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.13
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.13
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.13
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.13
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.13
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.13
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.13
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.13
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.13
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.12
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.12
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.12
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.12
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.12
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.12
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.12
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.12
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.12
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.12
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.12
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.12
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.12
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.12
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.12
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.12
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.11
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.11
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.11
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.11
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.11
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.11
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.11
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.11
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.11
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.11
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.1
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.1
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.1
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.1
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.1
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.1
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.09
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.09
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.09
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.09
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.09
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.09
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.09
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.09
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.08
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.08
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.08
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.07
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.07
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.07
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.06
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.06
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.04
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.02
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.02
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.02
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.01
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.01
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.0
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.0
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.0
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.99
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.99
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.98
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.98
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.98
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.98
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.98
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.98
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.98
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.98
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.98
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.98
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.97
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.97
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.97
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.97
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.97
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.97
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.97
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.97
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.96
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.96
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.96
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.96
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.95
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.95
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.95
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.95
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.95
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.95
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.95
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.95
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.95
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.95
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.95
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.94
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.94
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.94
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.94
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.94
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.94
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.93
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.93
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.93
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.92
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.92
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.92
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.92
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.92
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.92
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.92
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.91
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.91
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.91
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.91
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.91
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.91
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.9
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.9
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.89
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.89
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.89
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.88
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.88
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.88
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.88
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.88
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.87
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.87
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.86
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.86
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.85
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.85
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.83
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.83
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.83
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.82
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.8
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.8
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.74
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.71
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.67
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.64
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.55
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.54
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.54
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.51
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.49
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.49
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.48
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.47
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.42
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.41
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.41
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.39
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.38
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.35
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.34
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.33
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.32
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.31
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.31
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.28
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.28
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.27
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.25
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.24
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.23
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.23
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.22
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.21
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.21
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.2
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.2
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.19
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.19
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.15
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.14
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.12
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.06
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.06
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.05
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.05
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.05
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.03
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.02
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.02
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.99
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.99
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.97
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.97
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.97
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.96
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.96
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.96
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.94
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.94
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.93
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.92
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.14
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.11
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.87
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.87
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.87
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.87
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.85
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.83
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.83
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.82
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.81
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.8
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.98
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.76
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.75
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.94
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.91
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.67
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.61
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.73
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.54
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.31
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.22
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	97.04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.63
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.19
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.98
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.95
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.09
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	94.65
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	94.29
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	93.59
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	89.38
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.61
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	85.07
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	82.09
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	81.68
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	80.51

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=2.2e-38  Score=276.51  Aligned_cols=181  Identities=33%  Similarity=0.644  Sum_probs=78.2

Q ss_pred             HHHHHHHcCCCCCeecCccccccCChHHHHHHHHHhcCCCCcccccccccccCCHHHHHHHHHHhcCCCcccCCCCCccc
Q psy12560        123 LDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSF  202 (440)
Q Consensus       123 l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f  202 (440)
                      |..|+..|.++++|.|++|++.|.+...|..|++.|.+..+ |.|+.|++.|.+...|..|++.|+++++|.|+.|++.|
T Consensus         9 l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   87 (190)
T 2i13_A            9 SVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSF   87 (190)
T ss_dssp             ----------------------CCSSHHHHHGGGCC---CC-EECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred             chhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCC-ccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCcc
Confidence            33344444444444444444444444444444444433332 44444444444444444444444444444444444444


Q ss_pred             cCchhhhhccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        203 IEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       203 ~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      .+...|..|++.|.++++|.|+.|++.|.+...|..|+++|+++++|.|++|++.|.+...|..|+++|+++++|.|++|
T Consensus        88 ~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  167 (190)
T 2i13_A           88 SQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC  167 (190)
T ss_dssp             SCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTT
T ss_pred             CCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCC
Confidence            44444444444444455555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             ccccCChHHHHHHHHhhcCCCC
Q psy12560        283 HKSFTRKDNLERHVKSIHLEDP  304 (440)
Q Consensus       283 ~~~f~~~~~l~~H~~~~H~~~~  304 (440)
                      ++.|.++..|..|++.+++++|
T Consensus       168 ~~~f~~~~~L~~H~~~H~~~k~  189 (190)
T 2i13_A          168 GKSFSRRDALNVHQRTHTGKKT  189 (190)
T ss_dssp             CCEESSHHHHHHHHTTC-----
T ss_pred             CCccCCHHHHHHHHHhcCCCCC
Confidence            5555555555555554444443

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=2.1e-38  Score=276.56  Aligned_cols=185  Identities=32%  Similarity=0.612  Sum_probs=148.9

Q ss_pred             hHHHHHhHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCeecCccccccCChHHHHHHHHHhcCCCCcccccccc
Q psy12560         92 KYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCN  171 (440)
Q Consensus        92 ~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~C~~C~  171 (440)
                      ...|..|+..+.++++|.|+.|++.|.+...|..|++.|.++++|.|+.|++.|.+...|..|+++|++..+ |.|+.|+
T Consensus         6 ~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~   84 (190)
T 2i13_A            6 SSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECG   84 (190)
T ss_dssp             -------------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCC-EECTTTC
T ss_pred             hccchhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCC-ccCcccC
Confidence            456888999999999999999999999999999999999999999999999999999999999999998776 9999999


Q ss_pred             cccCCHHHHHHHHHHhcCCCcccCCCCCccccCchhhhhccccccCccccccCccCcccCChHHHHHHHHHhCCCCcccc
Q psy12560        172 KALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC  251 (440)
Q Consensus       172 ~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (440)
                      +.|.+...|..|++.|+++++|.|++|++.|.+...|..|++.|+++++|.|+.|++.|.+...|..|+++|+++++|.|
T Consensus        85 ~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C  164 (190)
T 2i13_A           85 KSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKC  164 (190)
T ss_dssp             CEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEEC
T ss_pred             CccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeEC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccCChHHHHHHHHHhcCCCce
Q psy12560        252 KLCDKIFFTLHNMRRHMRIHKDRPLF  277 (440)
Q Consensus       252 ~~C~~~f~~~~~L~~H~~~H~~~~~~  277 (440)
                      ++|++.|.+...|..|+++|+|++||
T Consensus       165 ~~C~~~f~~~~~L~~H~~~H~~~k~~  190 (190)
T 2i13_A          165 PECGKSFSRRDALNVHQRTHTGKKTS  190 (190)
T ss_dssp             TTTCCEESSHHHHHHHHTTC------
T ss_pred             CCCCCccCCHHHHHHHHHhcCCCCCC
Confidence            99999999999999999999999886

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.97  E-value=1.4e-31  Score=233.33  Aligned_cols=166  Identities=31%  Similarity=0.620  Sum_probs=124.9

Q ss_pred             CCCCeec--CccccccCChHHHHHHHHHhcCCCCcccc--cccccccCCHHHHHHHHHHhcCCCcccCC--CCCccccCc
Q psy12560        132 DLNPYEC--SNCHKGFKNKGKLNRHMKIHSDSKEQWFC--KVCNKALMSVESLKKHMKIHAGLKNYHCD--ICEKSFIEK  205 (440)
Q Consensus       132 ~~~~~~C--~~C~~~f~~~~~L~~H~~~h~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~  205 (440)
                      ..++|.|  +.|++.|.+...|..|+++|.+.++ |.|  +.|++.|.+...|..|++.|.++++|.|+  .|++.|.+.
T Consensus         9 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~   87 (190)
T 1tf6_A            9 VYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKP-FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTK   87 (190)
T ss_dssp             -CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCS-SCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCH
T ss_pred             CCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCC-ccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCH
Confidence            3456666  4666667666667777666666554 666  66777777777777777777777777777  677777777


Q ss_pred             hhhhhcc-ccc-cCcccccc--CccCcccCChHHHHHHHHHhCCCCccccCc--cccccCChHHHHHHHHHhcCCCceec
Q psy12560        206 NDLIKHQ-VTH-SDKKIFVC--ENCGKSFKRKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIHKDRPLFEC  279 (440)
Q Consensus       206 ~~l~~H~-~~h-~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~H~~~~~~~C  279 (440)
                      ..|..|+ +.| .++++|.|  +.|++.|.+...|..|+++|+++++|.|++  |++.|.+...|..|+++|++   |.|
T Consensus        88 ~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~---~~C  164 (190)
T 1tf6_A           88 ANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPC  164 (190)
T ss_dssp             HHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS---CCC
T ss_pred             HHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC---CcC
Confidence            7777777 455 35677888  778888888888888888888888888877  88888888888888888887   888


Q ss_pred             Cc---CccccCChHHHHHHHHhhcC
Q psy12560        280 HD---CHKSFTRKDNLERHVKSIHL  301 (440)
Q Consensus       280 ~~---C~~~f~~~~~l~~H~~~~H~  301 (440)
                      ..   |++.|.+...|..|++.+|+
T Consensus       165 ~~~~~C~~~f~~~~~l~~H~~~h~~  189 (190)
T 1tf6_A          165 KKDDSCSFVGKTWTLYLKHVAECHQ  189 (190)
T ss_dssp             CSTTTCCCCCSCHHHHHHHHTTCC-
T ss_pred             CCCCcCCCccccHHHHHHHHHhhcC
Confidence            88   88888888888888886654

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.97  E-value=2.8e-31  Score=231.37  Aligned_cols=164  Identities=24%  Similarity=0.506  Sum_probs=100.3

Q ss_pred             ceeec--ccchhhccChHHHHHhHhhcCCCCceec--cccccccCChHHHHHHHHHcCCCCCeecC--ccccccCChHHH
Q psy12560         78 VMYKC--LKCKRQFKVKYNCKYHIHCTSLKAKLSC--DICDKTFVNKSHLDYHKLSHQDLNPYECS--NCHKGFKNKGKL  151 (440)
Q Consensus        78 ~~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~L  151 (440)
                      ++|.|  +.|++.|.+...|..|++.|.++++|.|  +.|++.|.+...|..|++.|.++++|.|.  .|++.|.+...|
T Consensus        11 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l   90 (190)
T 1tf6_A           11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANM   90 (190)
T ss_dssp             CCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHH
T ss_pred             cceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHH
Confidence            56777  5677777777777777777777777777  66777777777777777777777777777  677777777777


Q ss_pred             HHHHH-HhcCCCCcccc--cccccccCCHHHHHHHHHHhcCCCcccCCC--CCccccCchhhhhccccccCccccccCc-
Q psy12560        152 NRHMK-IHSDSKEQWFC--KVCNKALMSVESLKKHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCEN-  225 (440)
Q Consensus       152 ~~H~~-~h~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~-  225 (440)
                      ..|++ .|.....+|.|  +.|++.|.+...|..|++.|+++++|.|++  |++.|.+...|..|+++|++   |.|.. 
T Consensus        91 ~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~---~~C~~~  167 (190)
T 1tf6_A           91 KKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKD  167 (190)
T ss_dssp             HHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS---CCCCST
T ss_pred             HHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC---CcCCCC
Confidence            77763 33222333556  556666655555555555555555555544  55555555555555555444   44444 


Q ss_pred             --cCcccCChHHHHHHHHHhC
Q psy12560        226 --CGKSFKRKYDLALHIRTHF  244 (440)
Q Consensus       226 --C~~~f~~~~~l~~H~~~h~  244 (440)
                        |++.|.+...|..|+++|+
T Consensus       168 ~~C~~~f~~~~~l~~H~~~h~  188 (190)
T 1tf6_A          168 DSCSFVGKTWTLYLKHVAECH  188 (190)
T ss_dssp             TTCCCCCSCHHHHHHHHTTCC
T ss_pred             CcCCCccccHHHHHHHHHhhc
Confidence              4444444444444444444

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.95  E-value=1.3e-27  Score=201.01  Aligned_cols=143  Identities=28%  Similarity=0.578  Sum_probs=112.4

Q ss_pred             CeecCccccccCChHHHHHHHH---HhcCCCCcccccccccccCCHHHHHHHHHHhcCCCcccCCCCCccccCchhhhhc
Q psy12560        135 PYECSNCHKGFKNKGKLNRHMK---IHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKH  211 (440)
Q Consensus       135 ~~~C~~C~~~f~~~~~L~~H~~---~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H  211 (440)
                      +|.|+.|++.|.+...|..|++   +|.+.+ +|.|++|+                       |..|++.|.+...|..|
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~-~~~C~~c~-----------------------C~~c~~~f~~~~~l~~H   58 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERK-EFVCHWGG-----------------------CSRELRPFKAQYMLVVH   58 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSS-CCCCCBTT-----------------------CTTTTCCCSSHHHHHHH
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCc-ceeCCCCC-----------------------ccchhhhhhhHHHHHHH
Confidence            4556666666666666666655   232322 25555442                       55566888888888888


Q ss_pred             cccccCccccccCc--cCcccCChHHHHHHHHHhCCCCccccCc--cccccCChHHHHHHH-HHhcCCCceecCc--Ccc
Q psy12560        212 QVTHSDKKIFVCEN--CGKSFKRKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHM-RIHKDRPLFECHD--CHK  284 (440)
Q Consensus       212 ~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~-~~H~~~~~~~C~~--C~~  284 (440)
                      ++.|.++++|.|++  |++.|.+...|..|+++|+++++|.|++  |++.|.+...|..|+ ++|.++++|.|++  |++
T Consensus        59 ~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~  138 (155)
T 2gli_A           59 MRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTK  138 (155)
T ss_dssp             THHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCC
T ss_pred             HHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCcc
Confidence            88888888899975  9999999999999999999999999998  999999999999998 7899999999988  999


Q ss_pred             ccCChHHHHHHHHhhcC
Q psy12560        285 SFTRKDNLERHVKSIHL  301 (440)
Q Consensus       285 ~f~~~~~l~~H~~~~H~  301 (440)
                      .|.+...|..|++.+|+
T Consensus       139 ~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          139 RYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             EESSHHHHHHHHHHSCC
T ss_pred             ccCCHHHHHHHHHhhcC
Confidence            99999999999987764

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.94  E-value=3.5e-27  Score=198.28  Aligned_cols=137  Identities=32%  Similarity=0.564  Sum_probs=73.4

Q ss_pred             ceeccccccccCChHHHHHHHH---HcCCCCCeecCcc-----ccccCChHHHHHHHHHhcCCCCcccccc--cccccCC
Q psy12560        107 KLSCDICDKTFVNKSHLDYHKL---SHQDLNPYECSNC-----HKGFKNKGKLNRHMKIHSDSKEQWFCKV--CNKALMS  176 (440)
Q Consensus       107 ~~~C~~C~~~f~~~~~l~~H~~---~h~~~~~~~C~~C-----~~~f~~~~~L~~H~~~h~~~~~~~~C~~--C~~~f~~  176 (440)
                      +|.|+.|++.|.+...|..|++   .|.++++|.|++|     ++.|.+...|..|+++|++..+ |.|++  |++.|.+
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~   81 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKP-HKCTFEGCRKSYSR   81 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCC-CCCCSTTCCCCCSS
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCC-ccCCCCCCCCcccC
Confidence            4566666666666666666665   4556666666554     4555555555555555555443 55543  5555555


Q ss_pred             HHHHHHHHHHhcCCCcccCCC--CCccccCchhhhhcc-ccccCccccccCc--cCcccCChHHHHHHHHHhC
Q psy12560        177 VESLKKHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQ-VTHSDKKIFVCEN--CGKSFKRKYDLALHIRTHF  244 (440)
Q Consensus       177 ~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~-~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~  244 (440)
                      ...|..|++.|+++++|.|++  |++.|.+...|..|+ +.|.++++|.|++  |++.|.+...|..|+++|+
T Consensus        82 ~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hh  154 (155)
T 2gli_A           82 LENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH  154 (155)
T ss_dssp             HHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhc
Confidence            555555555555555555554  555554444444444 4444444444444  4444444444444444443

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.90  E-value=5.8e-24  Score=171.40  Aligned_cols=115  Identities=30%  Similarity=0.607  Sum_probs=102.3

Q ss_pred             cCCCcccCCCCCccccCchhhhhccccccCccccccCccCcccCChHHHHHHHHH---hCCCCccccCccccccCChHHH
Q psy12560        188 AGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRT---HFPLKRFQCKLCDKIFFTLHNM  264 (440)
Q Consensus       188 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~---h~~~~~~~C~~C~~~f~~~~~L  264 (440)
                      .+.++|.|++|++.|.+...|..|++.|.++++|.|+.|++.|.+...|..|++.   |.++++|.|++|++.|.+...|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l   82 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL   82 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHH
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHH
Confidence            4567888888888888888888888888888889999999999999999999885   5678899999999999999999


Q ss_pred             HHHHHHhcCCCceecCcCccccCChHHHHHHHHhhcCC
Q psy12560        265 RRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLE  302 (440)
Q Consensus       265 ~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  302 (440)
                      ..|+++|+++++|.|++|++.|.++..|..|++..|..
T Consensus        83 ~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           83 RLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             HHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             HHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence            99999999999999999999999999999999888863

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.89  E-value=1.1e-23  Score=168.51  Aligned_cols=111  Identities=32%  Similarity=0.692  Sum_probs=100.3

Q ss_pred             cCCCcccCCC--CCccccCchhhhhccccccCccccccC--ccCcccCChHHHHHHHHHhCCCCccccCccccccCChHH
Q psy12560        188 AGLKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCE--NCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHN  263 (440)
Q Consensus       188 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~  263 (440)
                      .++++|.|.+  |++.|.+...|..|++.|.++++|.|+  .|++.|.+...|..|+++|+++++|.|++|++.|.+...
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   81 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDH   81 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHH
Confidence            4577888886  888888888888888888888899998  799999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCceec--CcCccccCChHHHHHHHHh
Q psy12560        264 MRRHMRIHKDRPLFEC--HDCHKSFTRKDNLERHVKS  298 (440)
Q Consensus       264 L~~H~~~H~~~~~~~C--~~C~~~f~~~~~l~~H~~~  298 (440)
                      |..|+++|+++++|.|  +.|++.|.+...|..|++.
T Consensus        82 l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~  118 (119)
T 2jp9_A           82 LKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM  118 (119)
T ss_dssp             HHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhc
Confidence            9999999999999999  7899999999999999883

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.89  E-value=1.7e-24  Score=175.70  Aligned_cols=95  Identities=24%  Similarity=0.496  Sum_probs=58.5

Q ss_pred             hhccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCC
Q psy12560        209 IKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTR  288 (440)
Q Consensus       209 ~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~  288 (440)
                      ..|..+|.|+++|.|++|++.|.....|..|+++|+++++|.|++|++.|.+...|..|+++|++++||.|++||+.|.+
T Consensus        11 ~h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~   90 (133)
T 2lt7_A           11 DHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFIN   90 (133)
T ss_dssp             SEEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESS
T ss_pred             hhceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCC
Confidence            33445556666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hHHHHHHHHhhcCCC
Q psy12560        289 KDNLERHVKSIHLED  303 (440)
Q Consensus       289 ~~~l~~H~~~~H~~~  303 (440)
                      +..|..|++.+|+++
T Consensus        91 ~~~L~~H~~~hh~~~  105 (133)
T 2lt7_A           91 YQFMSSHIKSVHSQD  105 (133)
T ss_dssp             HHHHHHHHHHHTCCC
T ss_pred             HHHHHHHhHHhcCCC
Confidence            666666666555543

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.88  E-value=2.5e-23  Score=167.75  Aligned_cols=113  Identities=33%  Similarity=0.623  Sum_probs=67.5

Q ss_pred             CCcccCC--CCCccccCchhhhhccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCc--cccccCChHHHH
Q psy12560        190 LKNYHCD--ICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMR  265 (440)
Q Consensus       190 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~  265 (440)
                      +++|.|+  .|++.|.+...|..|++.| ++++|.|+.|++.|.+...|..|+++|+++++|.|.+  |++.|.+...|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~   81 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR   81 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHH
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHH
Confidence            3455565  5666666666666666555 5556666666666666666666666666666666654  666666666666


Q ss_pred             HHHHHhcCCCceecC--cCccccCChHHHHHHHHhhcCCC
Q psy12560        266 RHMRIHKDRPLFECH--DCHKSFTRKDNLERHVKSIHLED  303 (440)
Q Consensus       266 ~H~~~H~~~~~~~C~--~C~~~f~~~~~l~~H~~~~H~~~  303 (440)
                      .|+++|+++++|.|+  .|++.|.+...|..|++.+++++
T Consensus        82 ~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k  121 (124)
T 1ubd_C           82 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK  121 (124)
T ss_dssp             HHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC---
T ss_pred             HHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccc
Confidence            666666666666664  36666666666666666554443

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.88  E-value=3.9e-23  Score=167.61  Aligned_cols=108  Identities=27%  Similarity=0.452  Sum_probs=101.1

Q ss_pred             HHHHhcCCCcccCCCCCccccCchhhhhccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChH
Q psy12560        183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLH  262 (440)
Q Consensus       183 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~  262 (440)
                      |..+|.|+++|.|++|++.|.+...|..|+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|++.|.+..
T Consensus        13 ~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~   92 (133)
T 2lt7_A           13 YELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQ   92 (133)
T ss_dssp             EEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHH
T ss_pred             ceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCC------ceecCcCccccCChH
Q psy12560        263 NMRRHMRIHKDRP------LFECHDCHKSFTRKD  290 (440)
Q Consensus       263 ~L~~H~~~H~~~~------~~~C~~C~~~f~~~~  290 (440)
                      .|..|+++|++++      +|+|..|++.|....
T Consensus        93 ~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~~  126 (133)
T 2lt7_A           93 FMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQY  126 (133)
T ss_dssp             HHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCCC
T ss_pred             HHHHHhHHhcCCCCCCCCCCeecCCCCchhhhcc
Confidence            9999999998764      599999999987653

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=1.7e-22  Score=162.71  Aligned_cols=110  Identities=28%  Similarity=0.670  Sum_probs=78.8

Q ss_pred             ccccccccccCCHHHHHHHHHHhcCCCcccCCCCCccccCchhhhhcccc---ccCccccccCccCcccCChHHHHHHHH
Q psy12560        165 WFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVT---HSDKKIFVCENCGKSFKRKYDLALHIR  241 (440)
Q Consensus       165 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~---h~~~~~~~C~~C~~~f~~~~~l~~H~~  241 (440)
                      |.|++|++.|.+...|..|++.|.++++|.|++|++.|.+...|..|+..   +.++++|.|++|++.|.+...|..|++
T Consensus         8 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~   87 (124)
T 2dlq_A            8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMV   87 (124)
T ss_dssp             CCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHH
Confidence            55555555555555555555555555556666666666666666666553   456778888888888888888888888


Q ss_pred             HhCCCCccccCccccccCChHHHHHHHHH-hcCC
Q psy12560        242 THFPLKRFQCKLCDKIFFTLHNMRRHMRI-HKDR  274 (440)
Q Consensus       242 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~-H~~~  274 (440)
                      +|+++++|.|++|++.|.+...|..|++. |.++
T Consensus        88 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~  121 (124)
T 2dlq_A           88 SHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP  121 (124)
T ss_dssp             HHSSSCSEECSSSCCEESSHHHHHHHHHHTSSCS
T ss_pred             HcCCCCCccCCCccchhCCHHHHHHHHHHHCCCC
Confidence            88888888888888888888888888874 5554

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.88  E-value=5.3e-23  Score=172.66  Aligned_cols=87  Identities=33%  Similarity=0.625  Sum_probs=42.1

Q ss_pred             cccCccCcccCChHHHHHHHHHhCCCCccccCc--cccccCChHHHHHHHHHhcCCCceecCc--CccccCChHHHHHHH
Q psy12560        221 FVCENCGKSFKRKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIHKDRPLFECHD--CHKSFTRKDNLERHV  296 (440)
Q Consensus       221 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~H~~~~~~~C~~--C~~~f~~~~~l~~H~  296 (440)
                      |.|+.|++.|.+...|..|+++|+++++|.|.+  |++.|.+...|..|+++|+++++|.|.+  |++.|.+...|.+|+
T Consensus        63 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~  142 (155)
T 2rpc_A           63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM  142 (155)
T ss_dssp             TTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSS
T ss_pred             cCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHH
Confidence            444444444444444444444444444444444  4444444444444544444444455543  555555555555554


Q ss_pred             HhhcCCCCCCC
Q psy12560        297 KSIHLEDPSEN  307 (440)
Q Consensus       297 ~~~H~~~~~~~  307 (440)
                      +.+++++||.|
T Consensus       143 ~~H~~~k~~~c  153 (155)
T 2rpc_A          143 HVHTSDKSGPS  153 (155)
T ss_dssp             TTTTSCCCSCS
T ss_pred             HHhcCCCCCCC
Confidence            44444444443

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.88  E-value=7.6e-23  Score=171.70  Aligned_cols=118  Identities=31%  Similarity=0.541  Sum_probs=111.8

Q ss_pred             CcccccccccccCCHHHHHHHHHH-hcCCCc--------ccCCCCCccccCchhhhhccccccCccccccCc--cCcccC
Q psy12560        163 EQWFCKVCNKALMSVESLKKHMKI-HAGLKN--------YHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN--CGKSFK  231 (440)
Q Consensus       163 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~  231 (440)
                      ..|.|..|++.|.+...|..|++. |.+..+        |.|++|++.|.+...|..|++.|.++++|.|+.  |++.|.
T Consensus        24 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~  103 (155)
T 2rpc_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFA  103 (155)
T ss_dssp             CSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEES
T ss_pred             cccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccC
Confidence            349999999999999999999998 666554        899999999999999999999999999999998  999999


Q ss_pred             ChHHHHHHHHHhCCCCccccCc--cccccCChHHHHHHHHHhcCCCceecC
Q psy12560        232 RKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIHKDRPLFECH  280 (440)
Q Consensus       232 ~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~H~~~~~~~C~  280 (440)
                      ....|..|+++|+++++|.|.+  |++.|.+...|..|+++|+++++|.|.
T Consensus       104 ~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A          104 RSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             CHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            9999999999999999999997  999999999999999999999999986

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.87  E-value=8.1e-23  Score=164.69  Aligned_cols=112  Identities=30%  Similarity=0.622  Sum_probs=80.7

Q ss_pred             cccc--ccccccCCHHHHHHHHHHhcCCCcccCCCCCccccCchhhhhccccccCccccccCc--cCcccCChHHHHHHH
Q psy12560        165 WFCK--VCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN--CGKSFKRKYDLALHI  240 (440)
Q Consensus       165 ~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~  240 (440)
                      |.|+  .|++.|.+...|..|++.| +.++|.|++|++.|.+...|..|++.|.++++|.|+.  |++.|.....|..|+
T Consensus         6 ~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~   84 (124)
T 1ubd_C            6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV   84 (124)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHH
T ss_pred             ccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHH
Confidence            6666  5666666666666666666 6667777777777777777777777777777778865  888888888888888


Q ss_pred             HHhCCCCccccC--ccccccCChHHHHHHHHHhcCCCce
Q psy12560        241 RTHFPLKRFQCK--LCDKIFFTLHNMRRHMRIHKDRPLF  277 (440)
Q Consensus       241 ~~h~~~~~~~C~--~C~~~f~~~~~L~~H~~~H~~~~~~  277 (440)
                      ++|+++++|.|+  .|++.|.+...|..|+++|++++++
T Consensus        85 ~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           85 RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             HHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             HHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence            888888888885  4888888888888888888777765

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.87  E-value=1.6e-22  Score=161.63  Aligned_cols=107  Identities=36%  Similarity=0.730  Sum_probs=69.9

Q ss_pred             ccccc--cccccCCHHHHHHHHHHhcCCCcccCC--CCCccccCchhhhhccccccCccccccCccCcccCChHHHHHHH
Q psy12560        165 WFCKV--CNKALMSVESLKKHMKIHAGLKNYHCD--ICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHI  240 (440)
Q Consensus       165 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  240 (440)
                      |.|.+  |++.|.+...|..|++.|.++++|.|+  .|++.|.+...|..|++.|+++++|.|+.|++.|.+...|..|+
T Consensus         7 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   86 (119)
T 2jp9_A            7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHT   86 (119)
T ss_dssp             BCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHH
T ss_pred             eeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHHHHHH
Confidence            55554  555555555555555555555566665  46666666666666666666666677777777777777777777


Q ss_pred             HHhCCCCcccc--CccccccCChHHHHHHHHHh
Q psy12560        241 RTHFPLKRFQC--KLCDKIFFTLHNMRRHMRIH  271 (440)
Q Consensus       241 ~~h~~~~~~~C--~~C~~~f~~~~~L~~H~~~H  271 (440)
                      ++|+++++|.|  +.|++.|.+...|..|+++|
T Consensus        87 ~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           87 RTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            77777777777  66777777777777777655

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.79  E-value=2e-19  Score=137.72  Aligned_cols=89  Identities=31%  Similarity=0.593  Sum_probs=78.2

Q ss_pred             ccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHHH
Q psy12560        215 HSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLER  294 (440)
Q Consensus       215 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~  294 (440)
                      +.++++|.|++|++.|.+...|..|+++|+++++|.|++|++.|.+...|..|+++|+++++|.|++|++.|.+...|..
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   82 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTV   82 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHH
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHH
Confidence            45678899999999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCC
Q psy12560        295 HVKSIHLED  303 (440)
Q Consensus       295 H~~~~H~~~  303 (440)
                      |++.++++.
T Consensus        83 H~~~h~~~~   91 (96)
T 2dmd_A           83 HLRSHTGDS   91 (96)
T ss_dssp             HHTTCCSCC
T ss_pred             HHHHhcCCC
Confidence            998766544

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=3.2e-20  Score=147.23  Aligned_cols=99  Identities=13%  Similarity=0.242  Sum_probs=92.0

Q ss_pred             CchhhhhccccccCccccccCccCcccCChHHHHHHHHH--hCCCCccc-cCcccccc--CChHHHHHHHHHhcCCCcee
Q psy12560        204 EKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRT--HFPLKRFQ-CKLCDKIF--FTLHNMRRHMRIHKDRPLFE  278 (440)
Q Consensus       204 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~-C~~C~~~f--~~~~~L~~H~~~H~~~~~~~  278 (440)
                      +...|..|+++|+++++|.|++|++.|.....|..|+++  |.+++++. |++|++.|  .....|..|+++|+++++|.
T Consensus         3 s~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~   82 (115)
T 2dmi_A            3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLK   82 (115)
T ss_dssp             CCCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCB
T ss_pred             cchhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceE
Confidence            456799999999999999999999999999999999999  77777665 99999999  89999999999999999999


Q ss_pred             cCcCccccCChHHHHHHHHhhcCC
Q psy12560        279 CHDCHKSFTRKDNLERHVKSIHLE  302 (440)
Q Consensus       279 C~~C~~~f~~~~~l~~H~~~~H~~  302 (440)
                      |++|++.|.+...|..|++.+|..
T Consensus        83 C~~C~k~f~~~~~L~~H~~~hh~~  106 (115)
T 2dmi_A           83 CMYCGHSFESLQDLSVHMIKTKHY  106 (115)
T ss_dssp             CSSSCCBCSSHHHHHHHHHHTTTT
T ss_pred             CCCCCCccCCHHHHHHHHHHhCCc
Confidence            999999999999999999987764

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.78  E-value=5e-19  Score=138.13  Aligned_cols=92  Identities=30%  Similarity=0.665  Sum_probs=81.5

Q ss_pred             ccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHHH
Q psy12560        215 HSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLER  294 (440)
Q Consensus       215 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~  294 (440)
                      ...+++|.|++|++.|.....|..|+++|+++++|.|.+|++.|.....|..|+++|+++++|.|.+|++.|.+...|..
T Consensus        12 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~   91 (106)
T 2ee8_A           12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAV   91 (106)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHH
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCC
Q psy12560        295 HVKSIHLEDPSE  306 (440)
Q Consensus       295 H~~~~H~~~~~~  306 (440)
                      |++.+++++++.
T Consensus        92 H~~~H~~~~~~~  103 (106)
T 2ee8_A           92 HKTLHMQTSSPT  103 (106)
T ss_dssp             HHHHTTSCCCCC
T ss_pred             HHHHhCCCCCCc
Confidence            998777677664

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.77  E-value=3.8e-19  Score=138.83  Aligned_cols=91  Identities=27%  Similarity=0.564  Sum_probs=63.4

Q ss_pred             CCCcccCCCCCccccCchhhhhccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHH
Q psy12560        189 GLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHM  268 (440)
Q Consensus       189 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~  268 (440)
                      .+++|.|.+|++.|.+...|..|++.|.++++|.|++|++.|.....|..|+++|+++++|.|.+|++.|.+...|..|+
T Consensus        14 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~   93 (106)
T 2ee8_A           14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHK   93 (106)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHHH
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHHH
Confidence            34566666666666666666666666666667777777777777777777777777777777777777777777777777


Q ss_pred             HHhcCCCceec
Q psy12560        269 RIHKDRPLFEC  279 (440)
Q Consensus       269 ~~H~~~~~~~C  279 (440)
                      ++|+++++|.+
T Consensus        94 ~~H~~~~~~~~  104 (106)
T 2ee8_A           94 TLHMQTSSPTA  104 (106)
T ss_dssp             HHTTSCCCCCC
T ss_pred             HHhCCCCCCcC
Confidence            77777766653

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=6.8e-19  Score=137.62  Aligned_cols=96  Identities=17%  Similarity=0.367  Sum_probs=82.9

Q ss_pred             hccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCCh
Q psy12560        210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRK  289 (440)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~  289 (440)
                      .+++.|.++++|.|++|++.|.....|..|+++|  .++|.|.+|++.|.....|..|++ |+++++|.|.+|++.|.+.
T Consensus         6 s~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~   82 (107)
T 1wjp_A            6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSS   82 (107)
T ss_dssp             CCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSH
T ss_pred             ccCcccCCCcCeECCCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCH
Confidence            4567788889999999999999999999999998  468999999999999999999995 9999999999999999999


Q ss_pred             HHHHHHHHhhcC-CCCCCCc
Q psy12560        290 DNLERHVKSIHL-EDPSENT  308 (440)
Q Consensus       290 ~~l~~H~~~~H~-~~~~~~~  308 (440)
                      ..|..|++..|. ++++.+.
T Consensus        83 ~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           83 FSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HHHHHHHHHTSCCCCCCCCC
T ss_pred             HHHHHHHHHHcCCCCCCCCC
Confidence            999999986665 6666543

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=9e-19  Score=133.71  Aligned_cols=87  Identities=33%  Similarity=0.635  Sum_probs=79.6

Q ss_pred             cCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcCC--CceecCcCccccCChHHHH
Q psy12560        216 SDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDR--PLFECHDCHKSFTRKDNLE  293 (440)
Q Consensus       216 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~--~~~~C~~C~~~f~~~~~l~  293 (440)
                      .++++|.|++|++.|.+...|..|+++|+++++|.|++|++.|.+...|..|+++|+++  ++|.|++|++.|.+...|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~   82 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN   82 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999987  8999999999999999999


Q ss_pred             HHHHhhcCC
Q psy12560        294 RHVKSIHLE  302 (440)
Q Consensus       294 ~H~~~~H~~  302 (440)
                      .|++..|..
T Consensus        83 ~H~~~~H~~   91 (95)
T 2yt9_A           83 GHIKQVHSG   91 (95)
T ss_dssp             HHHHHTSCC
T ss_pred             HHHHHhcCC
Confidence            999877763

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.77  E-value=5.6e-19  Score=133.39  Aligned_cols=86  Identities=30%  Similarity=0.636  Sum_probs=73.8

Q ss_pred             CccccccC--ccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHHH
Q psy12560        217 DKKIFVCE--NCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLER  294 (440)
Q Consensus       217 ~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~  294 (440)
                      ++++|.|+  .|++.|.....|..|+++|+++++|.|+.|++.|.+...|..|+++|+++++|.|++|++.|.+...|..
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   80 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR   80 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHH
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHH
Confidence            35788897  5999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCC
Q psy12560        295 HVKSIHLE  302 (440)
Q Consensus       295 H~~~~H~~  302 (440)
                      |++.++++
T Consensus        81 H~~~H~~~   88 (90)
T 1a1h_A           81 HTKIHLRQ   88 (90)
T ss_dssp             HHGGGGC-
T ss_pred             HHHHhccc
Confidence            98866543

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.76  E-value=6.9e-19  Score=130.34  Aligned_cols=81  Identities=33%  Similarity=0.677  Sum_probs=73.0

Q ss_pred             ccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHHHHHHhh
Q psy12560        220 IFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSI  299 (440)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~  299 (440)
                      ||.|+.|++.|.+...|..|+++|+++++|.|+.|++.|.+...|..|+++|+++++|.|+.|++.|.+...|..|++.+
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhh
Confidence            57899999999999999999999988999999999999999999999999999999999999999999999999998865


Q ss_pred             c
Q psy12560        300 H  300 (440)
Q Consensus       300 H  300 (440)
                      +
T Consensus        81 ~   81 (82)
T 2kmk_A           81 T   81 (82)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.76  E-value=9.1e-19  Score=133.96  Aligned_cols=91  Identities=23%  Similarity=0.452  Sum_probs=82.5

Q ss_pred             hcCCCcccCCCCCccccCchhhhhccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHH
Q psy12560        187 HAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRR  266 (440)
Q Consensus       187 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~  266 (440)
                      +.++++|.|.+|++.|.+...|..|++.|.++++|.|+.|++.|.....|..|+++|+++++|.|++|++.|.+...|..
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   82 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTV   82 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHH
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCce
Q psy12560        267 HMRIHKDRPLF  277 (440)
Q Consensus       267 H~~~H~~~~~~  277 (440)
                      |+++|+++++.
T Consensus        83 H~~~h~~~~~p   93 (96)
T 2dmd_A           83 HLRSHTGDSGP   93 (96)
T ss_dssp             HHTTCCSCCCC
T ss_pred             HHHHhcCCCCC
Confidence            99999987653

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.76  E-value=1.2e-18  Score=136.98  Aligned_cols=87  Identities=36%  Similarity=0.713  Sum_probs=83.7

Q ss_pred             cccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHH
Q psy12560        214 THSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLE  293 (440)
Q Consensus       214 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~  293 (440)
                      .|.++++|.| .|++.|.+...|..|+++|+++++|.|++|++.|.+...|..|+++|+++++|.|++|++.|.+...|.
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFH   82 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHH
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHH
Confidence            5788999999 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcC
Q psy12560        294 RHVKSIHL  301 (440)
Q Consensus       294 ~H~~~~H~  301 (440)
                      .|++.+|.
T Consensus        83 ~H~~~~~~   90 (110)
T 2csh_A           83 RHVTSCTK   90 (110)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHccc
Confidence            99998775

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=4.9e-19  Score=138.41  Aligned_cols=94  Identities=17%  Similarity=0.306  Sum_probs=83.7

Q ss_pred             HHHhcCCCcccCCCCCccccCchhhhhccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHH
Q psy12560        184 MKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHN  263 (440)
Q Consensus       184 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~  263 (440)
                      ++.|.++++|.|.+|++.|.....|..|++.|  .++|.|++|++.|.....|..|++ |+++++|.|.+|++.|.+...
T Consensus         8 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~   84 (107)
T 1wjp_A            8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFS   84 (107)
T ss_dssp             CCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHH
T ss_pred             CcccCCCcCeECCCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHH
Confidence            45677888899999999999999999998887  468999999999999999999995 999999999999999999999


Q ss_pred             HHHHHH-HhcCCCceecC
Q psy12560        264 MRRHMR-IHKDRPLFECH  280 (440)
Q Consensus       264 L~~H~~-~H~~~~~~~C~  280 (440)
                      |..|++ +|.++++|.|.
T Consensus        85 L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           85 IWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HHHHHHHTSCCCCCCCCC
T ss_pred             HHHHHHHHcCCCCCCCCC
Confidence            999997 89999999875

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.75  E-value=8.1e-19  Score=132.50  Aligned_cols=87  Identities=32%  Similarity=0.656  Sum_probs=72.2

Q ss_pred             CCCcccCC--CCCccccCchhhhhccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHH
Q psy12560        189 GLKNYHCD--ICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRR  266 (440)
Q Consensus       189 ~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~  266 (440)
                      ++++|.|+  .|++.|.+...|..|++.|.++++|.|+.|++.|.+...|..|+++|+++++|.|++|++.|.+...|..
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   80 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR   80 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHH
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHH
Confidence            35678887  5888888888888888888888888888888888888888889888888888999999999999999999


Q ss_pred             HHHHhcCCC
Q psy12560        267 HMRIHKDRP  275 (440)
Q Consensus       267 H~~~H~~~~  275 (440)
                      |+++|++++
T Consensus        81 H~~~H~~~k   89 (90)
T 1a1h_A           81 HTKIHLRQK   89 (90)
T ss_dssp             HHGGGGC--
T ss_pred             HHHHhcccC
Confidence            998888765

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.74  E-value=1.3e-18  Score=128.89  Aligned_cols=82  Identities=35%  Similarity=0.692  Sum_probs=60.4

Q ss_pred             cccCCCCCccccCchhhhhccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHh
Q psy12560        192 NYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH  271 (440)
Q Consensus       192 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H  271 (440)
                      ||.|++|++.|.+...|..|++.|.++++|.|+.|++.|.....|..|+++|+++++|.|++|++.|.+...|..|+++|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhh
Confidence            46677777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cC
Q psy12560        272 KD  273 (440)
Q Consensus       272 ~~  273 (440)
                      +|
T Consensus        81 ~g   82 (82)
T 2kmk_A           81 TG   82 (82)
T ss_dssp             C-
T ss_pred             CC
Confidence            64

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=1.3e-18  Score=137.98  Aligned_cols=100  Identities=22%  Similarity=0.341  Sum_probs=64.2

Q ss_pred             HHHHHHhcCCCCcccccccccccCCHHHHHHHHHH--hcCCCcc-cCCCCCccc--cCchhhhhccccccCccccccCcc
Q psy12560        152 NRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKI--HAGLKNY-HCDICEKSF--IEKNDLIKHQVTHSDKKIFVCENC  226 (440)
Q Consensus       152 ~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~-~C~~C~~~f--~~~~~l~~H~~~h~~~~~~~C~~C  226 (440)
                      ..|+++|.++++ |.|++|++.|.+...|..|++.  |.+.+++ .|++|++.|  .....|..|+++|.++++|.|++|
T Consensus         8 ~~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C   86 (115)
T 2dmi_A            8 KLYGSIFTGASK-FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYC   86 (115)
T ss_dssp             CCCCCCCCCCCS-EEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSS
T ss_pred             hhheeeeCCCCC-EECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCCC
Confidence            334444433332 4444444444444444444444  3334443 478888777  788888888888888888888888


Q ss_pred             CcccCChHHHHHHHHHhCCCCccccC
Q psy12560        227 GKSFKRKYDLALHIRTHFPLKRFQCK  252 (440)
Q Consensus       227 ~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (440)
                      ++.|.....|..|+++|+......++
T Consensus        87 ~k~f~~~~~L~~H~~~hh~~~~~~~~  112 (115)
T 2dmi_A           87 GHSFESLQDLSVHMIKTKHYQKVSGP  112 (115)
T ss_dssp             CCBCSSHHHHHHHHHHTTTTTCSCCC
T ss_pred             CCccCCHHHHHHHHHHhCCcccCCCC
Confidence            88888888888888887766555444

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.72  E-value=9.7e-18  Score=127.92  Aligned_cols=87  Identities=32%  Similarity=0.676  Sum_probs=76.6

Q ss_pred             cCCCcccCCCCCccccCchhhhhccccccCccccccCccCcccCChHHHHHHHHHhCCC--CccccCccccccCChHHHH
Q psy12560        188 AGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPL--KRFQCKLCDKIFFTLHNMR  265 (440)
Q Consensus       188 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~L~  265 (440)
                      .++++|.|.+|++.|.+...|..|++.|.++++|.|+.|++.|.....|..|+++|+++  ++|.|++|++.|.+...|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~   82 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN   82 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHH
Confidence            46778889999999998889999998888888999999999999999999999999887  8999999999999999999


Q ss_pred             HHHH-HhcCC
Q psy12560        266 RHMR-IHKDR  274 (440)
Q Consensus       266 ~H~~-~H~~~  274 (440)
                      .|++ .|.++
T Consensus        83 ~H~~~~H~~~   92 (95)
T 2yt9_A           83 GHIKQVHSGP   92 (95)
T ss_dssp             HHHHHTSCCC
T ss_pred             HHHHHhcCCC
Confidence            9986 67654

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=9.3e-18  Score=131.79  Aligned_cols=87  Identities=32%  Similarity=0.593  Sum_probs=70.8

Q ss_pred             HhcCCCcccCCCCCccccCchhhhhccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHH
Q psy12560        186 IHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMR  265 (440)
Q Consensus       186 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~  265 (440)
                      .|.++++|.| .|++.|.+...|..|++.|.++++|.|++|++.|.....|..|+++|+++++|.|++|++.|.+...|.
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFH   82 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHH
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHH
Confidence            3567778888 788888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHhcC
Q psy12560        266 RHMRIHKD  273 (440)
Q Consensus       266 ~H~~~H~~  273 (440)
                      .|+++|++
T Consensus        83 ~H~~~~~~   90 (110)
T 2csh_A           83 RHVTSCTK   90 (110)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHccc
Confidence            88887753

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.68  E-value=3.9e-18  Score=128.15  Aligned_cols=83  Identities=28%  Similarity=0.463  Sum_probs=75.9

Q ss_pred             ccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHHHHHH
Q psy12560        218 KKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVK  297 (440)
Q Consensus       218 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~  297 (440)
                      ++||.|+.|++.|.....|..|+++|+++++|.|+.|++.|.....|..|+++|++ .+|.|..|++.|.+...|..|++
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~~   79 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVA   79 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHHH
Confidence            46899999999999999999999999999999999999999999999999999885 78999999999999999999999


Q ss_pred             hhcC
Q psy12560        298 SIHL  301 (440)
Q Consensus       298 ~~H~  301 (440)
                      ..|.
T Consensus        80 ~~h~   83 (88)
T 1llm_C           80 RLKK   83 (88)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.68  E-value=9.8e-17  Score=123.53  Aligned_cols=84  Identities=33%  Similarity=0.679  Sum_probs=75.1

Q ss_pred             CccccccCc--cCcccCChHHHHHHHHHhCCCCccccC--ccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHH
Q psy12560        217 DKKIFVCEN--CGKSFKRKYDLALHIRTHFPLKRFQCK--LCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNL  292 (440)
Q Consensus       217 ~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l  292 (440)
                      ..++|.|..  |++.|.....|..|+++|+++++|.|.  .|++.|.....|..|+++|+++++|.|.+|++.|.+...|
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   91 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHL   91 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHH
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHH
Confidence            456789986  999999999999999999999999996  5999999999999999999999999999999999999999


Q ss_pred             HHHHHhhc
Q psy12560        293 ERHVKSIH  300 (440)
Q Consensus       293 ~~H~~~~H  300 (440)
                      ..|++.++
T Consensus        92 ~~H~~~H~   99 (100)
T 2ebt_A           92 ALHMKRHQ   99 (100)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            99998553

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.67  E-value=2.5e-17  Score=112.73  Aligned_cols=52  Identities=29%  Similarity=0.632  Sum_probs=30.9

Q ss_pred             CCccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHHHHHH
Q psy12560        246 LKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVK  297 (440)
Q Consensus       246 ~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~  297 (440)
                      |+||.|.+|++.|.....|..|+++|+|++||.|++||++|.+.+.|..|++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~   53 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK   53 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGG
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhC
Confidence            4555565566666555556666655655556666666666666666666655

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.67  E-value=6.7e-17  Score=121.56  Aligned_cols=81  Identities=32%  Similarity=0.713  Sum_probs=69.1

Q ss_pred             ccccccCc--cCcccCChHHHHHHHHHhCCCCccccC--ccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHH
Q psy12560        218 KKIFVCEN--CGKSFKRKYDLALHIRTHFPLKRFQCK--LCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLE  293 (440)
Q Consensus       218 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~  293 (440)
                      ..+|.|+.  |++.|.....|..|+++|+++++|.|+  .|++.|.+...|..|+++|+++++|.|+.|++.|.+...|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA   82 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHH
Confidence            35688888  888888888888888888888888886  58888888888888888888888888888888888888888


Q ss_pred             HHHHh
Q psy12560        294 RHVKS  298 (440)
Q Consensus       294 ~H~~~  298 (440)
                      .|++.
T Consensus        83 ~H~~~   87 (89)
T 2wbs_A           83 LHMKR   87 (89)
T ss_dssp             HHGGG
T ss_pred             HHHHh
Confidence            88873

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.66  E-value=6.8e-17  Score=110.58  Aligned_cols=58  Identities=29%  Similarity=0.740  Sum_probs=56.0

Q ss_pred             ccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCC
Q psy12560        218 KKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRP  275 (440)
Q Consensus       218 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~  275 (440)
                      |+||.|++||+.|...+.|..|+++|++++||.|.+|++.|.....|..|+++|+|++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            7899999999999999999999999999999999999999999999999999999875

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.65  E-value=1.4e-16  Score=122.68  Aligned_cols=84  Identities=31%  Similarity=0.619  Sum_probs=63.7

Q ss_pred             CCcccCCC--CCccccCchhhhhccccccCccccccC--ccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHH
Q psy12560        190 LKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCE--NCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMR  265 (440)
Q Consensus       190 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~  265 (440)
                      .++|.|..  |++.|.....|..|++.|.++++|.|+  .|++.|.....|..|+++|+++++|.|++|++.|.....|.
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   92 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA   92 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHH
T ss_pred             CcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHH
Confidence            45667775  777777777777777777777777775  58888888888888888888888888888888888888888


Q ss_pred             HHHHHhcC
Q psy12560        266 RHMRIHKD  273 (440)
Q Consensus       266 ~H~~~H~~  273 (440)
                      .|+++|++
T Consensus        93 ~H~~~H~~  100 (100)
T 2ebt_A           93 LHMKRHQN  100 (100)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhCC
Confidence            88887754

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.64  E-value=1.3e-16  Score=119.97  Aligned_cols=83  Identities=33%  Similarity=0.658  Sum_probs=71.9

Q ss_pred             CCcccCCC--CCccccCchhhhhccccccCccccccC--ccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHH
Q psy12560        190 LKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCE--NCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMR  265 (440)
Q Consensus       190 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~  265 (440)
                      .++|.|+.  |++.|.+...|..|++.|.++++|.|+  .|++.|.....|..|+++|+++++|.|++|++.|.+...|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA   82 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHH
Confidence            45788888  888888888888888888888888886  59999999999999999998989999999999999999999


Q ss_pred             HHHHHhc
Q psy12560        266 RHMRIHK  272 (440)
Q Consensus       266 ~H~~~H~  272 (440)
                      .|+++|.
T Consensus        83 ~H~~~H~   89 (89)
T 2wbs_A           83 LHMKRHF   89 (89)
T ss_dssp             HHGGGGC
T ss_pred             HHHHhhC
Confidence            9988873

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.64  E-value=2.3e-16  Score=117.43  Aligned_cols=78  Identities=32%  Similarity=0.674  Sum_probs=72.1

Q ss_pred             cccc--CccCcccCChHHHHHHHHHhCCCCccccCc--cccccCChHHHHHHHHHhcCCCceecCc---CccccCChHHH
Q psy12560        220 IFVC--ENCGKSFKRKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIHKDRPLFECHD---CHKSFTRKDNL  292 (440)
Q Consensus       220 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~H~~~~~~~C~~---C~~~f~~~~~l  292 (440)
                      ||.|  +.|++.|.....|..|+++|+++++|.|++  |++.|.+...|..|+++|++   |.|..   |++.|.+...|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l   77 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLY   77 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHH
Confidence            5889  889999999999999999999999999988  99999999999999999988   99999   99999999999


Q ss_pred             HHHHHhhc
Q psy12560        293 ERHVKSIH  300 (440)
Q Consensus       293 ~~H~~~~H  300 (440)
                      ..|++.+|
T Consensus        78 ~~H~~~hh   85 (85)
T 2j7j_A           78 LKHVAECH   85 (85)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhcC
Confidence            99998665

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=2.9e-16  Score=117.21  Aligned_cols=80  Identities=25%  Similarity=0.391  Sum_probs=72.6

Q ss_pred             hhhhccccccCccccccCccCcccCChHHHHHHHHHhCCC----CccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        207 DLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPL----KRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       207 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~----~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      .|..|+++|.++++|.|++|++.|.....|..|+++|+..    ++|.|.+|++.|.....|..|+++|++++++.|..|
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~   81 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS   81 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCC
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCC
Confidence            4678999999999999999999999999999999887765    789999999999999999999999999999999999


Q ss_pred             cccc
Q psy12560        283 HKSF  286 (440)
Q Consensus       283 ~~~f  286 (440)
                      +..|
T Consensus        82 ~~~~   85 (86)
T 1x6h_A           82 GPSS   85 (86)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8876

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=4.1e-16  Score=114.34  Aligned_cols=72  Identities=28%  Similarity=0.522  Sum_probs=65.2

Q ss_pred             cCccccccCc--cCcccCChHHHHHHHH-HhCCCCccccCc--cccccCChHHHHHHHHHhcCCCceecCcCccccC
Q psy12560        216 SDKKIFVCEN--CGKSFKRKYDLALHIR-THFPLKRFQCKL--CDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFT  287 (440)
Q Consensus       216 ~~~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~  287 (440)
                      +++++|.|..  |++.|.+...|..|++ .|.++++|.|++  |++.|.+...|..|+++|+++++|.|++|++.|.
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            4677888886  9999999999999998 698999999998  9999999999999999999999999999999884

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.61  E-value=5e-17  Score=122.01  Aligned_cols=82  Identities=22%  Similarity=0.449  Sum_probs=69.1

Q ss_pred             CCcccCCCCCccccCchhhhhccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHH
Q psy12560        190 LKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMR  269 (440)
Q Consensus       190 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~  269 (440)
                      +++|.|++|++.|.....|..|+++|.++++|.|+.|++.|.....|..|+++|++ .+|.|+.|++.|.+...|..|++
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~~   79 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVA   79 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHHH
Confidence            46788888888888888888888888888888888888888888888888888874 78888888888888888888887


Q ss_pred             Hhc
Q psy12560        270 IHK  272 (440)
Q Consensus       270 ~H~  272 (440)
                      .++
T Consensus        80 ~~h   82 (88)
T 1llm_C           80 RLK   82 (88)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.58  E-value=3e-16  Score=126.89  Aligned_cols=111  Identities=20%  Similarity=0.265  Sum_probs=83.6

Q ss_pred             HhcCCCcccCCCCCccccCchhhhhc---cccccCccccccCccCcccC------ChHHHHHHHHHhCCCCccccCcccc
Q psy12560        186 IHAGLKNYHCDICEKSFIEKNDLIKH---QVTHSDKKIFVCENCGKSFK------RKYDLALHIRTHFPLKRFQCKLCDK  256 (440)
Q Consensus       186 ~h~~~~~~~C~~C~~~f~~~~~l~~H---~~~h~~~~~~~C~~C~~~f~------~~~~l~~H~~~h~~~~~~~C~~C~~  256 (440)
                      .+.+.++|.|...+....  ..+..+   ......++.+.|++|++.|.      ....|..|+ .|+++++|.|++|++
T Consensus         6 ~~~~~k~~~~~~k~~~~~--~s~ee~~~~~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C~k   82 (129)
T 2wbt_A            6 VDSGSKKYLSNHKGIFIH--VTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLCLM   82 (129)
T ss_dssp             CCTTCCGGGGCSSCEEEE--CCHHHHHHHTTSCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTTCC
T ss_pred             hcccccccccccCCeeee--ecHHhhhccccCChhhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCCCc
Confidence            355677777766543322  122222   22233456677877766655      566677776 688999999999999


Q ss_pred             ccCChHHHHHHHHHhcCCCceecCcCccccCChHHHHHHHHhhcC
Q psy12560        257 IFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHL  301 (440)
Q Consensus       257 ~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  301 (440)
                      .|.....|..|+++|  +++|.|++|++.|.+...|.+|++.+|+
T Consensus        83 ~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~  125 (129)
T 2wbt_A           83 PFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHN  125 (129)
T ss_dssp             EESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTC
T ss_pred             ccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCC
Confidence            999999999999999  8899999999999999999999997775

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=1.3e-15  Score=116.57  Aligned_cols=77  Identities=23%  Similarity=0.387  Sum_probs=65.7

Q ss_pred             ccCChHHHHHHHHHhCCCCccccCccccccC-ChHHHHHHHHHhcC-CCceecCcCccccCChHHHHHHHHhhcCCCCC
Q psy12560        229 SFKRKYDLALHIRTHFPLKRFQCKLCDKIFF-TLHNMRRHMRIHKD-RPLFECHDCHKSFTRKDNLERHVKSIHLEDPS  305 (440)
Q Consensus       229 ~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~~L~~H~~~H~~-~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~  305 (440)
                      .+.....+..|+++|.++++|.|.+|++.|. ....|..|+++|++ +++|.|.+|++.|.++..|.+|++.+|+++|.
T Consensus         5 s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~   83 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPS   83 (98)
T ss_dssp             CCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSS
T ss_pred             CCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCC
Confidence            4555566778888888889999999999999 89999999999888 88999999999999999999999888877664

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=1.9e-15  Score=110.22  Aligned_cols=69  Identities=29%  Similarity=0.579  Sum_probs=57.8

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceec
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFEC  279 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C  279 (440)
                      +...+.++++|.|++|++.|.....|..|+++|+++++|.|++|++.|.....|..|+++|++++||.|
T Consensus         9 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A            9 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CcCcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            444566778888888888888888888888888888888888888888888888888888888888877

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.57  E-value=1.5e-15  Score=112.94  Aligned_cols=78  Identities=28%  Similarity=0.522  Sum_probs=55.0

Q ss_pred             cccC--CCCCccccCchhhhhccccccCccccccCc--cCcccCChHHHHHHHHHhCCCCccccCc---cccccCChHHH
Q psy12560        192 NYHC--DICEKSFIEKNDLIKHQVTHSDKKIFVCEN--CGKSFKRKYDLALHIRTHFPLKRFQCKL---CDKIFFTLHNM  264 (440)
Q Consensus       192 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~---C~~~f~~~~~L  264 (440)
                      ||.|  +.|++.|.+...|..|+++|.++++|.|+.  |++.|.....|..|+++|++   |.|..   |++.|.+...|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l   77 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLY   77 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHH
Confidence            4566  666666666666666666666667777766  77777777777777777766   77777   77777777777


Q ss_pred             HHHHHHhc
Q psy12560        265 RRHMRIHK  272 (440)
Q Consensus       265 ~~H~~~H~  272 (440)
                      ..|+++|+
T Consensus        78 ~~H~~~hh   85 (85)
T 2j7j_A           78 LKHVAECH   85 (85)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhcC
Confidence            77777663

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=1.9e-15  Score=115.69  Aligned_cols=79  Identities=15%  Similarity=0.189  Sum_probs=68.9

Q ss_pred             cccCchhhhhccccccCccccccCccCcccC-ChHHHHHHHHHhCC-CCccccCccccccCChHHHHHHHHHhcCCCcee
Q psy12560        201 SFIEKNDLIKHQVTHSDKKIFVCENCGKSFK-RKYDLALHIRTHFP-LKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFE  278 (440)
Q Consensus       201 ~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~  278 (440)
                      .+.....+..|++.|.++++|.|++|++.|. ....|..|+++|++ +++|.|.+|++.|.+...|..|+++|++++++.
T Consensus         5 s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~   84 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSD   84 (98)
T ss_dssp             CCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSC
T ss_pred             CCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCC
Confidence            4566677888899999999999999999999 99999999999888 889999999999999999999999999888764


Q ss_pred             c
Q psy12560        279 C  279 (440)
Q Consensus       279 C  279 (440)
                      -
T Consensus        85 ~   85 (98)
T 2gqj_A           85 A   85 (98)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=3.8e-15  Score=109.16  Aligned_cols=72  Identities=29%  Similarity=0.579  Sum_probs=56.0

Q ss_pred             cCCCcccCCC--CCccccCchhhhhccc-cccCccccccCc--cCcccCChHHHHHHHHHhCCCCccccCccccccC
Q psy12560        188 AGLKNYHCDI--CEKSFIEKNDLIKHQV-THSDKKIFVCEN--CGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFF  259 (440)
Q Consensus       188 ~~~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~  259 (440)
                      +++++|.|..  |++.|.+...|..|++ .|.++++|.|+.  |++.|.....|..|+++|+++++|.|++|++.|.
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            3566777776  7777777777777777 677777888877  8888888888888888888888888888887773

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=9.6e-15  Score=110.97  Aligned_cols=77  Identities=19%  Similarity=0.340  Sum_probs=61.9

Q ss_pred             cccCChHHHHHHHHHhCCCCccccCcccccc-CChHHHHHHHHHhcCCCceecCcCccccCChHHHHHHHHhhcCCCCC
Q psy12560        228 KSFKRKYDLALHIRTHFPLKRFQCKLCDKIF-FTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPS  305 (440)
Q Consensus       228 ~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f-~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~  305 (440)
                      ..|.....|..|++.|+++++|.|+.|++.| .+...|..|+++| ++++|.|.+|++.|.++..|..|++..|.++|+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSS
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCC
Confidence            4566777788888888888888888888888 8888888888888 888888888888888888888883336665554

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=5.9e-15  Score=112.74  Aligned_cols=69  Identities=13%  Similarity=0.282  Sum_probs=56.2

Q ss_pred             ccCccccccCccCcccCChHHHHHHHH-Hh---CCCCccccCccccccCChHHHHHH-HHHhcCCCceecCcCc
Q psy12560        215 HSDKKIFVCENCGKSFKRKYDLALHIR-TH---FPLKRFQCKLCDKIFFTLHNMRRH-MRIHKDRPLFECHDCH  283 (440)
Q Consensus       215 h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h---~~~~~~~C~~C~~~f~~~~~L~~H-~~~H~~~~~~~C~~C~  283 (440)
                      ..|++||.|+.|++.|.....|..|++ +|   .++++|.|.+|++.|.....|..| +++|++++||.|.++.
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            457788888888888888888888887 47   567888888888888888888888 7888888888888744

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.52  E-value=1.6e-14  Score=104.35  Aligned_cols=63  Identities=30%  Similarity=0.603  Sum_probs=41.9

Q ss_pred             ccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCce
Q psy12560        215 HSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLF  277 (440)
Q Consensus       215 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~  277 (440)
                      +.++++|.|+.|++.|.....|..|+++|+++++|+|.+|++.|.....|..|+++|++++||
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            445566666666666666666666666666666666666666666666666666666666654

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=3.6e-14  Score=105.69  Aligned_cols=79  Identities=22%  Similarity=0.312  Sum_probs=48.5

Q ss_pred             cccceeccCCCCceeecccchhhccChHHHHHhHhhcCCC----CceeccccccccCChHHHHHHHHHcCCCCCeecCcc
Q psy12560         66 IPDYIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLK----AKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNC  141 (440)
Q Consensus        66 ~~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~----~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  141 (440)
                      +..|+++|.++ ++|.|..|++.|.....|..|++.++..    ++|.|..|++.|.....|..|++.|++++++.|..|
T Consensus         3 ~~~H~~~H~~~-k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~   81 (86)
T 1x6h_A            3 SGSSGRTHTGE-KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS   81 (86)
T ss_dssp             TTCCSTTCCCC-CCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCC
T ss_pred             cccccceecCC-CCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCC
Confidence            34455555554 5666666666666666666666555543    456666666666666666666666666666666666


Q ss_pred             cccc
Q psy12560        142 HKGF  145 (440)
Q Consensus       142 ~~~f  145 (440)
                      +..|
T Consensus        82 ~~~~   85 (86)
T 1x6h_A           82 GPSS   85 (86)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            5543

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=2e-14  Score=109.23  Aligned_cols=77  Identities=22%  Similarity=0.290  Sum_probs=60.0

Q ss_pred             ccccCchhhhhccccccCccccccCccCccc-CChHHHHHHHHHhCCCCccccCccccccCChHHHHHH-HHHhcCCCce
Q psy12560        200 KSFIEKNDLIKHQVTHSDKKIFVCENCGKSF-KRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRH-MRIHKDRPLF  277 (440)
Q Consensus       200 ~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f-~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H-~~~H~~~~~~  277 (440)
                      ..|.....|..|++.+.++++|.|+.|++.| .....|..|+++| ++++|.|.+|++.|.....|..| +++|+++..|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~~   92 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSG   92 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSSC
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCCC
Confidence            3556667777777777778888888888888 7888888888888 88888888888888888888888 7777765444

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=2.5e-14  Score=104.14  Aligned_cols=66  Identities=24%  Similarity=0.557  Sum_probs=61.8

Q ss_pred             HhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHHHHHHhhcCCCCCCC
Q psy12560        242 THFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSEN  307 (440)
Q Consensus       242 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~  307 (440)
                      .+.++++|.|++|++.|.....|..|+++|+++++|.|++|++.|.....|..|++.+++++||.|
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            456789999999999999999999999999999999999999999999999999997777888876

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=2.6e-14  Score=101.93  Aligned_cols=62  Identities=24%  Similarity=0.369  Sum_probs=46.3

Q ss_pred             hCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHHHHHHhhcCCCC
Q psy12560        243 HFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDP  304 (440)
Q Consensus       243 h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~  304 (440)
                      |.++++|.|.+|++.|.....|..|+++|+++++|.|++|++.|.+...|..|++.+|+++|
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            55677777777777777777777777777777777777777777777777777777666544

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=7.6e-15  Score=106.95  Aligned_cols=63  Identities=29%  Similarity=0.559  Sum_probs=35.9

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHH-HhcCC-CceecCcCccccCChHHHHHHHHhhcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMR-IHKDR-PLFECHDCHKSFTRKDNLERHVKSIHL  301 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~-~H~~~-~~~~C~~C~~~f~~~~~l~~H~~~~H~  301 (440)
                      |+++|+++++|.|++|++.|.....|..|++ .|.++ ++|.|++|++.|.+...|..|++.+|.
T Consensus         6 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A            6 SGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             cccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            4445555555555555555555555555554 34442 556666666666666666666665554

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=2.8e-14  Score=102.38  Aligned_cols=58  Identities=26%  Similarity=0.534  Sum_probs=32.0

Q ss_pred             HhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHHHHHHhh
Q psy12560        242 THFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSI  299 (440)
Q Consensus       242 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~  299 (440)
                      +|+++++|.|++|++.|.....|..|+++|.++++|.|++|++.|.+...|.+|++.+
T Consensus         8 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H   65 (72)
T 1x6e_A            8 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH   65 (72)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             ccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhc
Confidence            3445555555555555555555555555555555555555555555555555555543

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.48  E-value=6.1e-14  Score=101.23  Aligned_cols=64  Identities=25%  Similarity=0.490  Sum_probs=59.7

Q ss_pred             HhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHHHHHHhhcCCCCC
Q psy12560        242 THFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPS  305 (440)
Q Consensus       242 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~  305 (440)
                      .+.++++|.|..|++.|.+...|..|+++|+++++|.|.+|++.|.+...|.+|++.+++++||
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            4568899999999999999999999999999999999999999999999999999987777764

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.47  E-value=3.8e-14  Score=104.30  Aligned_cols=59  Identities=24%  Similarity=0.527  Sum_probs=39.6

Q ss_pred             hCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHHHHHHhhcC
Q psy12560        243 HFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHL  301 (440)
Q Consensus       243 h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  301 (440)
                      +.+.++|.|++|++.|.+...|.+|+++|++++||.|.+|+++|.++..|.+|++..|.
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~   81 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHP   81 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCT
T ss_pred             CCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCc
Confidence            34555666666666666666667776666666677777777777777777777665664

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=4e-14  Score=100.98  Aligned_cols=64  Identities=23%  Similarity=0.332  Sum_probs=55.9

Q ss_pred             cccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCce
Q psy12560        214 THSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLF  277 (440)
Q Consensus       214 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~  277 (440)
                      .|.++++|.|++|++.|.....|..|+++|+++++|.|.+|++.|.....|..|+++|++++|.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            4667888999999999999999999999998889999999999999999999999998888764

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.46  E-value=5.5e-14  Score=95.76  Aligned_cols=56  Identities=23%  Similarity=0.488  Sum_probs=40.1

Q ss_pred             CCCccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHHHHHHhhc
Q psy12560        245 PLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH  300 (440)
Q Consensus       245 ~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~H  300 (440)
                      ++++|.|++|++.|.+...|..|+++|+++++|.|++|++.|.....|..|++.+|
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            35677777777777777777777777777777777777777777777777777665

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=4.7e-14  Score=101.20  Aligned_cols=65  Identities=35%  Similarity=0.597  Sum_probs=61.8

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCC
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRP  275 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~  275 (440)
                      +.++|.++++|.|++|++.|.....|..|+++|+++++|.|++|++.|.....|..|+++|+++.
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            46678999999999999999999999999999999999999999999999999999999998764

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.46  E-value=9.5e-15  Score=117.99  Aligned_cols=68  Identities=24%  Similarity=0.351  Sum_probs=46.5

Q ss_pred             CchhhhhccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcCC
Q psy12560        204 EKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDR  274 (440)
Q Consensus       204 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~  274 (440)
                      ....|..|+ .|++++||.|++|++.|.....|..|+++|  +++|.|++|++.|.....|..|+++|++.
T Consensus        59 ~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           59 ESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             THHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            344444454 466667777777777777777777777776  66777777777777777777777777664

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=8e-14  Score=101.45  Aligned_cols=68  Identities=24%  Similarity=0.438  Sum_probs=61.2

Q ss_pred             hhhhccccccCccccccCccCcccCChHHHHHHHH-HhCCC-CccccCccccccCChHHHHHHHHHhcCC
Q psy12560        207 DLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIR-THFPL-KRFQCKLCDKIFFTLHNMRRHMRIHKDR  274 (440)
Q Consensus       207 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~-~~~~C~~C~~~f~~~~~L~~H~~~H~~~  274 (440)
                      .|..|+++|.++++|.|++|++.|.....|..|++ .|.++ ++|.|++|++.|.+...|..|+++|++.
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A            2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             CCCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred             CCCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            46789999999999999999999999999999998 56664 8999999999999999999999986653

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.45  E-value=6.8e-14  Score=102.97  Aligned_cols=64  Identities=25%  Similarity=0.532  Sum_probs=57.5

Q ss_pred             cccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHH-HHhcCCC
Q psy12560        212 QVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHM-RIHKDRP  275 (440)
Q Consensus       212 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~-~~H~~~~  275 (440)
                      +..+...++|.|++|++.|.....|..|+++|++++||.|.+|++.|.....|.+|+ ++|.++.
T Consensus        20 ~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           20 LGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CSSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            445667788999999999999999999999999999999999999999999999997 4687764

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=4.8e-14  Score=99.25  Aligned_cols=60  Identities=37%  Similarity=0.747  Sum_probs=39.7

Q ss_pred             HhCCCCccccCccccccCChHHHHHHHHH-h-cCCCceecCcCccccCChHHHHHHHHhhcC
Q psy12560        242 THFPLKRFQCKLCDKIFFTLHNMRRHMRI-H-KDRPLFECHDCHKSFTRKDNLERHVKSIHL  301 (440)
Q Consensus       242 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~-H-~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  301 (440)
                      +|+++++|.|+.|++.|.+...|..|+++ | .++++|.|+.|++.|.+...|..|++.+|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            45566666666666666666666666666 4 366667777777777777777777666553

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=1.4e-13  Score=100.41  Aligned_cols=59  Identities=24%  Similarity=0.428  Sum_probs=53.9

Q ss_pred             hCCCCccccCccccccCChHHHHHHHHHhcC---CCceecCcCccccCChHHHHHHHHhhcC
Q psy12560        243 HFPLKRFQCKLCDKIFFTLHNMRRHMRIHKD---RPLFECHDCHKSFTRKDNLERHVKSIHL  301 (440)
Q Consensus       243 h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~---~~~~~C~~C~~~f~~~~~l~~H~~~~H~  301 (440)
                      |+++++|.|.+|++.|.....|..|+++|++   +++|.|.+|++.|.....|..|++.+|.
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   63 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP   63 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTST
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCC
Confidence            6788999999999999999999999999986   8899999999999999999999987886

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.42  E-value=1.4e-13  Score=93.71  Aligned_cols=57  Identities=30%  Similarity=0.631  Sum_probs=47.0

Q ss_pred             CccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcC
Q psy12560        217 DKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKD  273 (440)
Q Consensus       217 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  273 (440)
                      |+++|.|+.|++.|.+...|..|+++|+++++|.|++|++.|.....|..|+++|++
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            457889999999999999999999999888999999999999999999999988864

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=1.5e-15  Score=109.38  Aligned_cols=72  Identities=18%  Similarity=0.201  Sum_probs=63.0

Q ss_pred             CchhhhhccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        204 EKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       204 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      +...|..|++.|.++++|.|++|++.|.....|..       +++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         2 ~~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             cchhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            34678889999999999999999999988887766       7889999999999999999999999999999999887

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=4.6e-14  Score=107.80  Aligned_cols=68  Identities=22%  Similarity=0.318  Sum_probs=48.1

Q ss_pred             cCCCcccCCCCCccccCchhhhhccc-cc---cCccccccCccCcccCChHHHHHH-HHHhCCCCccccCccc
Q psy12560        188 AGLKNYHCDICEKSFIEKNDLIKHQV-TH---SDKKIFVCENCGKSFKRKYDLALH-IRTHFPLKRFQCKLCD  255 (440)
Q Consensus       188 ~~~~~~~C~~C~~~f~~~~~l~~H~~-~h---~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~  255 (440)
                      .++++|.|+.|++.|.....|..|++ .|   .+++||.|+.||+.|.....|..| +++|++++||.|.++.
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            45667777777777777777777775 36   456777777777777777777777 6777777777776643

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=2.2e-13  Score=95.85  Aligned_cols=61  Identities=25%  Similarity=0.523  Sum_probs=54.4

Q ss_pred             ccccCccccccCccCcccCChHHHHHHHHH-h-CCCCccccCccccccCChHHHHHHHHHhcC
Q psy12560        213 VTHSDKKIFVCENCGKSFKRKYDLALHIRT-H-FPLKRFQCKLCDKIFFTLHNMRRHMRIHKD  273 (440)
Q Consensus       213 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h-~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  273 (440)
                      ++|.++++|.|+.|++.|.....|..|+++ | .++++|.|+.|++.|.+...|..|+++|++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            567888999999999999999999999988 6 488999999999999999999999998876

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.39  E-value=3.8e-13  Score=91.54  Aligned_cols=53  Identities=30%  Similarity=0.616  Sum_probs=30.4

Q ss_pred             ccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHHHHHHhhc
Q psy12560        248 RFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH  300 (440)
Q Consensus       248 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~H  300 (440)
                      ||.|++|++.|.....|..|+++|+++++|.|+.|++.|.+...|..|++.++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   53 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA   53 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhc
Confidence            35555555555555555555555555555555555555555555555555443

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.39  E-value=4.9e-13  Score=90.95  Aligned_cols=56  Identities=32%  Similarity=0.675  Sum_probs=54.1

Q ss_pred             ccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCC
Q psy12560        220 IFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRP  275 (440)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~  275 (440)
                      ||.|+.|++.|.....|..|+++|+++++|.|++|++.|.+...|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            68999999999999999999999999999999999999999999999999998875

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.38  E-value=5.3e-13  Score=91.86  Aligned_cols=55  Identities=35%  Similarity=0.803  Sum_probs=44.6

Q ss_pred             CccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHHHHHHhhcC
Q psy12560        247 KRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHL  301 (440)
Q Consensus       247 ~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  301 (440)
                      ++|.|++|++.|.+...|..|+++|+++++|.|++|++.|.+...|..|++..|.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~   55 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS   55 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcC
Confidence            4688888888888888888888888888888888888888888888888765665

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=1e-12  Score=95.78  Aligned_cols=66  Identities=29%  Similarity=0.432  Sum_probs=56.0

Q ss_pred             cccCccccccCccCcccCChHHHHHHHHHhCC---CCccccCccccccCChHHHHHHHH-HhcCCCceec
Q psy12560        214 THSDKKIFVCENCGKSFKRKYDLALHIRTHFP---LKRFQCKLCDKIFFTLHNMRRHMR-IHKDRPLFEC  279 (440)
Q Consensus       214 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~L~~H~~-~H~~~~~~~C  279 (440)
                      .|+++++|.|++|++.|.....|..|+++|++   +++|.|.+|++.|.....|..|++ .|.++++...
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~   70 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ   70 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCS
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCcc
Confidence            36788999999999999999999999999885   789999999999999999999994 5666666543

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.30  E-value=1.9e-12  Score=88.99  Aligned_cols=56  Identities=36%  Similarity=0.729  Sum_probs=48.1

Q ss_pred             cccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHH-HHhcCC
Q psy12560        219 KIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHM-RIHKDR  274 (440)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~-~~H~~~  274 (440)
                      +||.|+.|++.|.....|..|+++|+++++|.|++|++.|.+...|..|+ ++|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            47889999999999999999999998888999999999999999999997 567654

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=6.3e-15  Score=106.07  Aligned_cols=69  Identities=26%  Similarity=0.330  Sum_probs=49.8

Q ss_pred             HHHHHHHHhcCCCcccCCCCCccccCchhhhhccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        179 SLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       179 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      .|..|++.|.++++|.|++|++.|.....|..       +++|.|+.|++.|.....|..|+++|+++++|.|++|
T Consensus         5 ~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             SCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             hHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            45566667777777777777777777776665       5667777777777777777777777777777777766

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=3.9e-12  Score=96.44  Aligned_cols=62  Identities=18%  Similarity=0.241  Sum_probs=53.4

Q ss_pred             cccccCccCcccCChHHHHHHHHH-hCCCCc--------cccCccccccCChHHHHHHHHHhcCCCceecC
Q psy12560        219 KIFVCENCGKSFKRKYDLALHIRT-HFPLKR--------FQCKLCDKIFFTLHNMRRHMRIHKDRPLFECH  280 (440)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  280 (440)
                      ..|.|+.|++.|.....|..|+++ |.++++        |.|.+|++.|.....|..|+++|+++++|.|+
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            347788999999999999999887 877776        88999999999999999999999888888886

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.28  E-value=2.4e-12  Score=92.46  Aligned_cols=55  Identities=31%  Similarity=0.766  Sum_probs=33.0

Q ss_pred             hCCCCccccC--ccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHHHHHH
Q psy12560        243 HFPLKRFQCK--LCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVK  297 (440)
Q Consensus       243 h~~~~~~~C~--~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~  297 (440)
                      |.++++|.|+  .|++.|.....|..|+++|.++++|.|++||+.|.+...|..|++
T Consensus        14 ~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   70 (73)
T 1f2i_G           14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR   70 (73)
T ss_dssp             CCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHT
T ss_pred             CCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHH
Confidence            4455556664  366666666666666666666666666666666666666666655

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.26  E-value=4.1e-12  Score=91.20  Aligned_cols=65  Identities=28%  Similarity=0.595  Sum_probs=57.6

Q ss_pred             hhhcc-ccccCccccccC--ccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhc
Q psy12560        208 LIKHQ-VTHSDKKIFVCE--NCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHK  272 (440)
Q Consensus       208 l~~H~-~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~  272 (440)
                      |..|. ..+.++++|.|+  .|++.|.....|..|+++|+++++|.|++|++.|.....|..|+++|+
T Consensus         6 ~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G            6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             --CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             ccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            34443 367889999997  599999999999999999999999999999999999999999999884

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=9.1e-12  Score=87.40  Aligned_cols=51  Identities=22%  Similarity=0.457  Sum_probs=25.9

Q ss_pred             CCCccccCccccccCChHHHHHHHHHhcCCCceecC-cCccccCChHHHHHHHH
Q psy12560        245 PLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECH-DCHKSFTRKDNLERHVK  297 (440)
Q Consensus       245 ~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~-~C~~~f~~~~~l~~H~~  297 (440)
                      ++++|.|.+|++.|. ...|..|+++ ++++||.|+ .||+.|..++.|..|++
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~   58 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLK   58 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHH
T ss_pred             CCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHH
Confidence            344455555555555 5555555554 455555555 55555555555555544

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=2e-11  Score=85.65  Aligned_cols=60  Identities=20%  Similarity=0.311  Sum_probs=55.9

Q ss_pred             ccCccccccCccCcccCChHHHHHHHHHhCCCCccccC-ccccccCChHHHHHHHHHhcCCCc
Q psy12560        215 HSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK-LCDKIFFTLHNMRRHMRIHKDRPL  276 (440)
Q Consensus       215 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~-~C~~~f~~~~~L~~H~~~H~~~~~  276 (440)
                      ..++++|.|+.|++.|. ...|..|+++ +++++|.|+ .|++.|.....|..|+++|.+.++
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            45788999999999999 9999999999 999999999 999999999999999999987664

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=7.8e-12  Score=80.75  Aligned_cols=44  Identities=30%  Similarity=0.375  Sum_probs=25.6

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            55555555555555555555555555555555555555555554

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.15  E-value=7.9e-12  Score=80.75  Aligned_cols=45  Identities=24%  Similarity=0.364  Sum_probs=28.8

Q ss_pred             hccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      +|+++|.++++|.|++|++.|.....|..|+++|+++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            456666666666666666666666666666666666666666655

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.15  E-value=3e-11  Score=77.98  Aligned_cols=45  Identities=20%  Similarity=0.263  Sum_probs=41.2

Q ss_pred             HHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        238 LHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       238 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      +|+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367788999999999999999999999999999999999999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.15  E-value=7.6e-12  Score=80.84  Aligned_cols=44  Identities=27%  Similarity=0.400  Sum_probs=25.5

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55555555555555555555555555555555555555555554

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=7e-12  Score=80.13  Aligned_cols=44  Identities=30%  Similarity=0.298  Sum_probs=21.9

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34444455555555555555555555555555555555555444

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3e-11  Score=77.94  Aligned_cols=45  Identities=27%  Similarity=0.313  Sum_probs=29.3

Q ss_pred             hccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      .|+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            456666666666666666666666666666666666666666655

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=7.8e-12  Score=80.75  Aligned_cols=44  Identities=25%  Similarity=0.313  Sum_probs=25.7

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55555555555555555555555555555555555555555554

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.3e-11  Score=77.73  Aligned_cols=45  Identities=24%  Similarity=0.394  Sum_probs=29.1

Q ss_pred             hccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      +|+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            456666666666666666666666666666666666666666655

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1e-11  Score=80.19  Aligned_cols=44  Identities=23%  Similarity=0.397  Sum_probs=22.3

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             cccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44445555555555555555555555555555555555555443

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=4.8e-11  Score=90.34  Aligned_cols=62  Identities=29%  Similarity=0.418  Sum_probs=57.5

Q ss_pred             CccccCccccccCChHHHHHHHHH-hcCCCc--------eecCcCccccCChHHHHHHHHhhcCCCCCCCc
Q psy12560        247 KRFQCKLCDKIFFTLHNMRRHMRI-HKDRPL--------FECHDCHKSFTRKDNLERHVKSIHLEDPSENT  308 (440)
Q Consensus       247 ~~~~C~~C~~~f~~~~~L~~H~~~-H~~~~~--------~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~  308 (440)
                      ..|.|..|++.|.+...|..|+++ |.++++        |.|.+|++.|.++..|..|++.+++++||.|.
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            357899999999999999999998 988887        99999999999999999999988789999885

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=8.2e-12  Score=80.66  Aligned_cols=44  Identities=27%  Similarity=0.404  Sum_probs=21.4

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44444444445554444444444444444444444444444443

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=9.8e-12  Score=80.28  Aligned_cols=45  Identities=18%  Similarity=0.168  Sum_probs=40.3

Q ss_pred             HHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        238 LHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       238 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      +|+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            367788899999999999999999999999999999999999887

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=7.6e-12  Score=80.82  Aligned_cols=44  Identities=23%  Similarity=0.289  Sum_probs=23.3

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44555555555555555555555555555555555555555544

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=7.6e-12  Score=80.84  Aligned_cols=44  Identities=27%  Similarity=0.344  Sum_probs=23.8

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            45555555555555555555555555555555555555555544

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=7.9e-12  Score=80.74  Aligned_cols=44  Identities=25%  Similarity=0.392  Sum_probs=23.8

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            45555555555555555555555555555555555555555544

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=8.5e-12  Score=80.59  Aligned_cols=45  Identities=31%  Similarity=0.476  Sum_probs=26.9

Q ss_pred             hccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      .|+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            355556666666666666666666666666666666666666554

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.1e-11  Score=77.84  Aligned_cols=44  Identities=20%  Similarity=0.231  Sum_probs=40.6

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.+...|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            67788999999999999999999999999999999999999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=9.5e-12  Score=80.36  Aligned_cols=44  Identities=27%  Similarity=0.406  Sum_probs=24.8

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            55555555555555555555555555555555555555555554

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=9.7e-12  Score=80.32  Aligned_cols=44  Identities=20%  Similarity=0.296  Sum_probs=39.7

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            66788899999999999999999999999999999999999887

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=6.7e-12  Score=81.09  Aligned_cols=44  Identities=30%  Similarity=0.434  Sum_probs=20.9

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44444444444444444444444444444444444444444443

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=7.4e-12  Score=80.87  Aligned_cols=44  Identities=25%  Similarity=0.354  Sum_probs=21.8

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            44444455555555555555555555555544544444544444

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.13  E-value=8.6e-12  Score=80.56  Aligned_cols=43  Identities=21%  Similarity=0.337  Sum_probs=20.2

Q ss_pred             HHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        240 IRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       240 ~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      +++|+++++|.|++|++.|.....|..|+++|++++||.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            4 GSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             ccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            3344444444444444444444444444444444444444443

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=3e-11  Score=77.91  Aligned_cols=44  Identities=18%  Similarity=0.240  Sum_probs=40.8

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67788999999999999999999999999999999999999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=9e-12  Score=80.46  Aligned_cols=44  Identities=27%  Similarity=0.351  Sum_probs=22.0

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44445555555555555555555555555555555555555444

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.13  E-value=8.1e-12  Score=80.69  Aligned_cols=44  Identities=20%  Similarity=0.283  Sum_probs=25.0

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            55555555555555555555555555555555555555555554

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=9e-12  Score=80.48  Aligned_cols=45  Identities=27%  Similarity=0.355  Sum_probs=26.7

Q ss_pred             hccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      .|+++|.++++|.|+.|++.|.....|..|+++|+++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            355555666666666666666666666666666665566665554

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=9.9e-12  Score=80.27  Aligned_cols=44  Identities=30%  Similarity=0.418  Sum_probs=23.1

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            44455555555555555555555555555555555555555544

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=8.4e-12  Score=80.62  Aligned_cols=44  Identities=27%  Similarity=0.363  Sum_probs=21.4

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44444444444454444444444444444444444444444443

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=3.2e-11  Score=77.84  Aligned_cols=45  Identities=16%  Similarity=0.157  Sum_probs=41.2

Q ss_pred             HHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        238 LHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       238 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      .|+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            367788999999999999999999999999999999999999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.1e-11  Score=79.98  Aligned_cols=44  Identities=30%  Similarity=0.387  Sum_probs=21.8

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44444444555555555555555555555444444444444444

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.1e-11  Score=80.13  Aligned_cols=44  Identities=27%  Similarity=0.378  Sum_probs=22.9

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44455555555555555555555555555555555555555444

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=8.4e-12  Score=80.60  Aligned_cols=44  Identities=20%  Similarity=0.369  Sum_probs=23.6

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45555555555555555555555555555555555555555544

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=9.8e-12  Score=80.29  Aligned_cols=44  Identities=30%  Similarity=0.512  Sum_probs=21.4

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44444444445555555444444444444444444444444443

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=8.7e-12  Score=80.54  Aligned_cols=45  Identities=27%  Similarity=0.458  Sum_probs=24.5

Q ss_pred             hccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      .|+++|.++++|.|++|++.|...+.|..|+++|+++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            355555555555555555555555555555555555555555544

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1e-11  Score=80.20  Aligned_cols=44  Identities=20%  Similarity=0.297  Sum_probs=23.2

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44455555555555555555555555555555555555555544

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.13  E-value=7.9e-12  Score=80.74  Aligned_cols=44  Identities=25%  Similarity=0.358  Sum_probs=21.9

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             cccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44445555555555555555555555555555544455554444

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=3.3e-11  Score=77.73  Aligned_cols=45  Identities=20%  Similarity=0.235  Sum_probs=41.1

Q ss_pred             HHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        238 LHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       238 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      .|+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999887

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.4e-11  Score=78.41  Aligned_cols=45  Identities=13%  Similarity=0.118  Sum_probs=41.0

Q ss_pred             HHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        238 LHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       238 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      .|+++|+++++|.|++|++.|.....|..|+++|+++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            367788999999999999999999999999999999999999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1e-11  Score=80.22  Aligned_cols=44  Identities=25%  Similarity=0.311  Sum_probs=24.0

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45555555555555555555555555555555555555555544

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=3.6e-11  Score=76.75  Aligned_cols=44  Identities=18%  Similarity=0.206  Sum_probs=40.0

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45678899999999999999999999999999999999999887

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.1e-11  Score=80.09  Aligned_cols=44  Identities=30%  Similarity=0.379  Sum_probs=23.2

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44555555555555555555555555555555555555555544

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.12  E-value=4.1e-11  Score=77.32  Aligned_cols=44  Identities=18%  Similarity=0.188  Sum_probs=40.3

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67788999999999999999999999999999999999999887

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=9.9e-12  Score=80.27  Aligned_cols=45  Identities=27%  Similarity=0.379  Sum_probs=26.1

Q ss_pred             hccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      .|+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            355555555556665566555555555555555555555555554

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=9.1e-12  Score=80.45  Aligned_cols=44  Identities=27%  Similarity=0.335  Sum_probs=21.6

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44444444455555555555555555555444444444444444

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.8e-11  Score=78.06  Aligned_cols=45  Identities=20%  Similarity=0.288  Sum_probs=40.2

Q ss_pred             HHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        238 LHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       238 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      +|+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            367788899999999999999999999999999999999999887

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=3.6e-11  Score=77.55  Aligned_cols=45  Identities=20%  Similarity=0.275  Sum_probs=41.0

Q ss_pred             HHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        238 LHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       238 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            367788999999999999999999999999999999999999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.8e-11  Score=78.09  Aligned_cols=45  Identities=18%  Similarity=0.228  Sum_probs=41.3

Q ss_pred             HHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        238 LHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       238 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      .|+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=3e-11  Score=77.95  Aligned_cols=44  Identities=20%  Similarity=0.289  Sum_probs=38.5

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            66778888899999999999999999999988988889998887

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=9.1e-12  Score=80.46  Aligned_cols=44  Identities=27%  Similarity=0.321  Sum_probs=23.6

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45555555555555555555555555555555555555555544

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=1.3e-11  Score=79.69  Aligned_cols=44  Identities=30%  Similarity=0.336  Sum_probs=23.0

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            44455555555555555555555555555555555555555544

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.12  E-value=3.1e-11  Score=77.88  Aligned_cols=44  Identities=18%  Similarity=0.278  Sum_probs=38.0

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            66778888888888888888888888888888888888888877

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=3.9e-11  Score=77.38  Aligned_cols=44  Identities=20%  Similarity=0.264  Sum_probs=41.0

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|.+|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            67788999999999999999999999999999999999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=7.9e-12  Score=80.73  Aligned_cols=44  Identities=27%  Similarity=0.364  Sum_probs=20.9

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44444444444444444444444444444444444444444443

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=1.3e-11  Score=79.67  Aligned_cols=44  Identities=23%  Similarity=0.243  Sum_probs=24.4

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|+|.+|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45555555555555555555555555555555555555555544

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.2e-11  Score=79.87  Aligned_cols=44  Identities=20%  Similarity=0.264  Sum_probs=22.7

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             cccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34444555555555555555555555555555555555555544

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.12  E-value=3.6e-11  Score=80.56  Aligned_cols=46  Identities=17%  Similarity=0.332  Sum_probs=29.6

Q ss_pred             hCCCCccccCccccccCChHHHHHHHH-HhcCCCceecCcCccccCC
Q psy12560        243 HFPLKRFQCKLCDKIFFTLHNMRRHMR-IHKDRPLFECHDCHKSFTR  288 (440)
Q Consensus       243 h~~~~~~~C~~C~~~f~~~~~L~~H~~-~H~~~~~~~C~~C~~~f~~  288 (440)
                      |.++++|.|++|++.|.....|..|++ +|.++++|.|.+|++.|.+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            445566666666666666666666665 5666666666666666654

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=3.2e-11  Score=77.81  Aligned_cols=45  Identities=18%  Similarity=0.250  Sum_probs=40.4

Q ss_pred             HHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        238 LHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       238 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367788899999999999999999999999999999999999887

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.11  E-value=1.1e-11  Score=80.13  Aligned_cols=44  Identities=27%  Similarity=0.332  Sum_probs=22.1

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            44445555555555555555555555555555555555555444

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.2e-11  Score=79.91  Aligned_cols=44  Identities=32%  Similarity=0.395  Sum_probs=24.1

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            45555555555555555555555555555555555555555544

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=3.1e-11  Score=77.84  Aligned_cols=44  Identities=20%  Similarity=0.280  Sum_probs=40.4

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67788999999999999999999999999999999999999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=1.1e-11  Score=80.09  Aligned_cols=44  Identities=27%  Similarity=0.353  Sum_probs=22.8

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|+|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44555555555555555555555555555555555555555444

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=3.7e-11  Score=77.50  Aligned_cols=44  Identities=23%  Similarity=0.307  Sum_probs=39.3

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            67788889999999999999999999999999999999999887

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=3.1e-11  Score=77.87  Aligned_cols=45  Identities=18%  Similarity=0.262  Sum_probs=41.0

Q ss_pred             HHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        238 LHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       238 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      .|+++|+++++|.|.+|++.|.....|..|+++|+++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            367788999999999999999999999999999999999999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=3.5e-11  Score=77.64  Aligned_cols=45  Identities=20%  Similarity=0.143  Sum_probs=40.6

Q ss_pred             HHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        238 LHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       238 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      .|+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367788899999999999999999999999999999999999887

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=3.7e-11  Score=77.49  Aligned_cols=44  Identities=20%  Similarity=0.180  Sum_probs=39.2

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            66788889999999999999999999999999999999999887

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=3.7e-11  Score=77.49  Aligned_cols=45  Identities=22%  Similarity=0.230  Sum_probs=40.2

Q ss_pred             HHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        238 LHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       238 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      .|+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            367788899999999999999999999999999999999999887

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1e-11  Score=80.25  Aligned_cols=44  Identities=23%  Similarity=0.471  Sum_probs=21.5

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            44444444445555555555444444444444444444444444

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.10  E-value=2.7e-11  Score=78.16  Aligned_cols=45  Identities=18%  Similarity=0.163  Sum_probs=38.8

Q ss_pred             HHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        238 LHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       238 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            366778888889999999999999999999988988888988887

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=3.1e-11  Score=77.89  Aligned_cols=44  Identities=20%  Similarity=0.246  Sum_probs=39.3

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66788889999999999999999999999999999999999887

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.10  E-value=1.6e-11  Score=79.29  Aligned_cols=44  Identities=25%  Similarity=0.311  Sum_probs=20.9

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34444444444444444444444444444444444444444443

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3.4e-11  Score=77.69  Aligned_cols=44  Identities=23%  Similarity=0.305  Sum_probs=39.7

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            67788899999999999999999999999999999999999887

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3.4e-11  Score=77.67  Aligned_cols=44  Identities=20%  Similarity=0.269  Sum_probs=39.5

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            66778899999999999999999999999999999999999887

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.5e-11  Score=79.41  Aligned_cols=44  Identities=32%  Similarity=0.471  Sum_probs=21.4

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            34444444445554455444444444444444444444444444

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.10  E-value=3.5e-11  Score=77.65  Aligned_cols=45  Identities=24%  Similarity=0.377  Sum_probs=40.7

Q ss_pred             hccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      +|+++|.++++|.|+.|++.|.....|..|+++|+++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588889999999999999999999999999999999999999887

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5e-11  Score=76.89  Aligned_cols=44  Identities=20%  Similarity=0.209  Sum_probs=39.2

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            66778889999999999999999999999999999999999887

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=4.6e-11  Score=77.04  Aligned_cols=44  Identities=18%  Similarity=0.181  Sum_probs=41.0

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            67788999999999999999999999999999999999999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=4.9e-11  Score=76.92  Aligned_cols=44  Identities=23%  Similarity=0.241  Sum_probs=39.1

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66788889999999999999999999999999999999999887

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=5.6e-11  Score=76.62  Aligned_cols=44  Identities=20%  Similarity=0.276  Sum_probs=40.8

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|+|.+|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66788999999999999999999999999999999999999987

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=5.4e-11  Score=76.72  Aligned_cols=44  Identities=18%  Similarity=0.209  Sum_probs=40.6

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.+...|..|+++|+++++|.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56788899999999999999999999999999999999999987

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=1.6e-11  Score=79.27  Aligned_cols=43  Identities=23%  Similarity=0.376  Sum_probs=21.1

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKL  253 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTC
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4444444444555555555554444444444444444444443

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=3.9e-11  Score=77.39  Aligned_cols=45  Identities=20%  Similarity=0.217  Sum_probs=39.9

Q ss_pred             HHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        238 LHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       238 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      +|+++|+++++|.|++|++.|.....|..|+++|+++++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            366788889999999999999999999999999999999999887

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=3.8e-11  Score=77.45  Aligned_cols=44  Identities=20%  Similarity=0.252  Sum_probs=38.6

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66778888899999999999999999999999998899998887

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=4.8e-11  Score=76.99  Aligned_cols=44  Identities=18%  Similarity=0.196  Sum_probs=38.2

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|++++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56778888889999999999988899999888888888888887

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.08  E-value=8.4e-11  Score=83.95  Aligned_cols=53  Identities=30%  Similarity=0.735  Sum_probs=31.2

Q ss_pred             CCCccccCc--cccccCChHHHHHHHHHhcCCCceecCc--CccccCChHHHHHHHH
Q psy12560        245 PLKRFQCKL--CDKIFFTLHNMRRHMRIHKDRPLFECHD--CHKSFTRKDNLERHVK  297 (440)
Q Consensus       245 ~~~~~~C~~--C~~~f~~~~~L~~H~~~H~~~~~~~C~~--C~~~f~~~~~l~~H~~  297 (440)
                      ..++|.|..  |++.|.....|..|+++|+++++|.|.+  |++.|.....|.+|++
T Consensus        14 ~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~   70 (72)
T 2epa_A           14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR   70 (72)
T ss_dssp             CCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTT
T ss_pred             ccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhh
Confidence            345555655  6666666666666666666666666643  6666666666666654

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=6.3e-11  Score=76.39  Aligned_cols=44  Identities=23%  Similarity=0.240  Sum_probs=40.4

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            66788899999999999999999999999999999999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=3.3e-11  Score=77.77  Aligned_cols=44  Identities=20%  Similarity=0.309  Sum_probs=39.8

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            66788899999999999999999999999999999999999887

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=9.1e-12  Score=80.45  Aligned_cols=44  Identities=27%  Similarity=0.408  Sum_probs=22.6

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44455555555555555555555555555555555555555444

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.08  E-value=4.3e-11  Score=77.16  Aligned_cols=44  Identities=20%  Similarity=0.230  Sum_probs=38.6

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.+...|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            66778888899999999999999999999988988889998887

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.5e-11  Score=78.35  Aligned_cols=43  Identities=33%  Similarity=0.505  Sum_probs=22.4

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKL  253 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4445555555555555555555555555555555555555544

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=4.7e-11  Score=77.00  Aligned_cols=44  Identities=16%  Similarity=0.214  Sum_probs=38.5

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56778888899999999999999999999999998899998887

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=3.8e-11  Score=77.44  Aligned_cols=45  Identities=31%  Similarity=0.398  Sum_probs=39.5

Q ss_pred             hccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      .|+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            578888888889999999999999999999988988889998887

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.07  E-value=7.8e-11  Score=84.14  Aligned_cols=60  Identities=33%  Similarity=0.682  Sum_probs=53.3

Q ss_pred             cccccCccccccCc--cCcccCChHHHHHHHHHhCCCCccccCc--cccccCChHHHHHHHHHh
Q psy12560        212 QVTHSDKKIFVCEN--CGKSFKRKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIH  271 (440)
Q Consensus       212 ~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~H  271 (440)
                      .......++|.|..  |++.|.....|..|+++|+++++|.|.+  |++.|.....|..|+++|
T Consensus         9 ~~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A            9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CCCccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            34456678899988  9999999999999999999999999965  999999999999998876

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.07  E-value=6.5e-11  Score=76.32  Aligned_cols=44  Identities=16%  Similarity=0.231  Sum_probs=39.5

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56778899999999999999999999999999999999999887

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.4e-11  Score=78.77  Aligned_cols=44  Identities=27%  Similarity=0.329  Sum_probs=24.1

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHH-HhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIR-THFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C  254 (440)
                      |+++|.++++|.|++|++.|.....|..|++ +|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            4555555555555555555555555555555 5555555555544

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=6e-11  Score=76.50  Aligned_cols=45  Identities=20%  Similarity=0.226  Sum_probs=39.5

Q ss_pred             HHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        238 LHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       238 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      +|+++|+++++|.|++|++.|.....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367788889999999999999999999999999999999999875

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=5.1e-11  Score=76.85  Aligned_cols=44  Identities=16%  Similarity=0.230  Sum_probs=39.6

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            66788899999999999999999999999999999999999887

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=3e-11  Score=77.93  Aligned_cols=44  Identities=18%  Similarity=0.238  Sum_probs=33.1

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55667777777777777777777777777777777777777766

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=7.5e-11  Score=76.03  Aligned_cols=44  Identities=18%  Similarity=0.211  Sum_probs=40.6

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            56778899999999999999999999999999999999999987

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.1e-10  Score=75.52  Aligned_cols=44  Identities=20%  Similarity=0.259  Sum_probs=38.8

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHH-HhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMR-IHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~-~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|++|++.|.....|..|++ +|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            6677888899999999999999999999998 8999999999887

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.5e-10  Score=74.59  Aligned_cols=44  Identities=25%  Similarity=0.299  Sum_probs=40.5

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      |+++|+++++|.|.+|++.|.....|..|+++|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66788999999999999999999999999999999999999875

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.02  E-value=1.5e-10  Score=77.42  Aligned_cols=47  Identities=28%  Similarity=0.495  Sum_probs=40.6

Q ss_pred             cccCccccccCccCcccCChHHHHHHHH-HhCCCCccccCccccccCC
Q psy12560        214 THSDKKIFVCENCGKSFKRKYDLALHIR-THFPLKRFQCKLCDKIFFT  260 (440)
Q Consensus       214 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~  260 (440)
                      .|.++++|.|++|++.|.....|..|++ +|+++++|.|++|++.|.+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            4677888999999999999999999987 8888999999999998875

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.02  E-value=1.7e-10  Score=73.98  Aligned_cols=41  Identities=20%  Similarity=0.230  Sum_probs=24.6

Q ss_pred             hCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcCc
Q psy12560        243 HFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCH  283 (440)
Q Consensus       243 h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~  283 (440)
                      |+++++|.|.+|++.|.....|..|+++|+++++|.|++||
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             cCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            45555666666666666666666666666666666666554

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.02  E-value=5.3e-11  Score=75.06  Aligned_cols=38  Identities=18%  Similarity=0.279  Sum_probs=18.4

Q ss_pred             HhCCCCccccCccccccCChHHHHHHHHHhcCCCceec
Q psy12560        242 THFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFEC  279 (440)
Q Consensus       242 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C  279 (440)
                      +|+++++|.|++|++.|.+...|..|+++|+++++|.|
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             SSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            34444444444444444444444444444444444444

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=5.8e-11  Score=76.57  Aligned_cols=42  Identities=29%  Similarity=0.434  Sum_probs=22.6

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccC
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK  252 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            445555555555555555555555555555555555555554

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.01  E-value=1.3e-10  Score=75.69  Aligned_cols=42  Identities=21%  Similarity=0.406  Sum_probs=29.4

Q ss_pred             hCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcCcc
Q psy12560        243 HFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHK  284 (440)
Q Consensus       243 h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~  284 (440)
                      |.++++|.|.+|++.|.....|..|+++|+++++|.|++|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            455667777777777777777777777777777777777764

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.01  E-value=6.2e-11  Score=76.45  Aligned_cols=42  Identities=33%  Similarity=0.432  Sum_probs=23.5

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccC
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK  252 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            455555555555555555555555555555555555555554

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.01  E-value=6.3e-12  Score=86.96  Aligned_cols=51  Identities=14%  Similarity=0.270  Sum_probs=27.9

Q ss_pred             hhhccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCCh
Q psy12560        208 LIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTL  261 (440)
Q Consensus       208 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  261 (440)
                      |..|++.|.+++||.|+.|++.|.....|.   ++|+++++|.|++|++.|...
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~   52 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEED   52 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEEC
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccC
Confidence            345555555555555555555555555443   455555555555555555443

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=7e-11  Score=76.17  Aligned_cols=42  Identities=29%  Similarity=0.479  Sum_probs=23.5

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccC
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK  252 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            455555555555555555555555555555555555555554

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.00  E-value=7.1e-11  Score=79.08  Aligned_cols=47  Identities=15%  Similarity=0.188  Sum_probs=19.9

Q ss_pred             cCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCc
Q psy12560        230 FKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPL  276 (440)
Q Consensus       230 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~  276 (440)
                      |.....|..|+++|+++++|.|.+|++.|.....|..|+++|++++|
T Consensus         6 ~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   52 (54)
T 1yui_A            6 AKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             CSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSC
T ss_pred             cCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCC
Confidence            33333344444444444444444444444444444444444444443

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=9.3e-11  Score=73.90  Aligned_cols=40  Identities=20%  Similarity=0.349  Sum_probs=18.9

Q ss_pred             cccccCccccccCccCcccCChHHHHHHHHHhCCCCcccc
Q psy12560        212 QVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC  251 (440)
Q Consensus       212 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (440)
                      +++|.++++|.|++|++.|.....|..|+++|+++++|.|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             CSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            3444444444444444444444444444444444444444

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=6.2e-11  Score=76.44  Aligned_cols=41  Identities=29%  Similarity=0.497  Sum_probs=19.0

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCcccc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC  251 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSS
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            44444444444444444444444444444444444444444

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=7.8e-11  Score=75.96  Aligned_cols=42  Identities=29%  Similarity=0.400  Sum_probs=23.8

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccC
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK  252 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            555555555555555555555555555555555555555554

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.99  E-value=2.6e-10  Score=73.44  Aligned_cols=43  Identities=23%  Similarity=0.280  Sum_probs=39.2

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCc
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHD  281 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  281 (440)
                      |+++|+++++|.|.+|++.|.....|..|+++|+++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6778899999999999999999999999999999999999874

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=7.4e-11  Score=76.07  Aligned_cols=42  Identities=24%  Similarity=0.358  Sum_probs=23.2

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccC
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK  252 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            455555555555555555555555555555555555555554

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=7.6e-11  Score=75.99  Aligned_cols=42  Identities=29%  Similarity=0.411  Sum_probs=19.4

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccC
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK  252 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            444444444444444444444444444444444444444443

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.99  E-value=4e-11  Score=82.85  Aligned_cols=54  Identities=19%  Similarity=0.381  Sum_probs=44.4

Q ss_pred             HHHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHH
Q psy12560        237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLE  293 (440)
Q Consensus       237 ~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~  293 (440)
                      ..|+++|+++++|.|+.|++.|.....|.   ++|.++++|.|++||+.|....++.
T Consensus         3 ~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            3 ETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCS
T ss_pred             hhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcccc
Confidence            45777888899999999999998887776   7888889999999999988766543

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=7.7e-11  Score=75.98  Aligned_cols=41  Identities=27%  Similarity=0.464  Sum_probs=19.6

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCcccc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC  251 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP   43 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCC
Confidence            44444444444444444444444444444444444444444

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=7.6e-11  Score=76.00  Aligned_cols=42  Identities=24%  Similarity=0.475  Sum_probs=22.5

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccC
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK  252 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            445555555555555555555555555555555555555554

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=6.9e-11  Score=76.19  Aligned_cols=41  Identities=22%  Similarity=0.305  Sum_probs=22.1

Q ss_pred             HhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        242 THFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       242 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      +|+++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         6 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            6 SGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            34455555555555555555555555555555555555544

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=9.7e-11  Score=75.50  Aligned_cols=42  Identities=26%  Similarity=0.339  Sum_probs=22.8

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccC
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK  252 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            445555555555555555555555555555555555555553

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.8e-10  Score=73.23  Aligned_cols=44  Identities=16%  Similarity=0.174  Sum_probs=39.6

Q ss_pred             HHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCc
Q psy12560        238 LHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHD  281 (440)
Q Consensus       238 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  281 (440)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            36778899999999999999999999999999999999999874

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=8.7e-11  Score=75.71  Aligned_cols=42  Identities=29%  Similarity=0.456  Sum_probs=23.3

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccC
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK  252 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            455555555555555555555555555555555555555554

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.1e-10  Score=75.29  Aligned_cols=42  Identities=29%  Similarity=0.468  Sum_probs=24.7

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccC
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK  252 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            555555555666666666666666666665555555555554

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=7.9e-11  Score=75.93  Aligned_cols=43  Identities=28%  Similarity=0.417  Sum_probs=24.5

Q ss_pred             hccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccC
Q psy12560        210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK  252 (440)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (440)
                      .|+++|.++++|.|+.|++.|.....|..|+++|+++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            3555555555555555555555555555555555555555554

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.2e-10  Score=73.00  Aligned_cols=43  Identities=19%  Similarity=0.310  Sum_probs=39.3

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCc
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHD  281 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  281 (440)
                      |+++|+++++|.|.+|++.|.....|..|+++|+++++|.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6778899999999999999999999999999999999999874

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=8.3e-11  Score=75.82  Aligned_cols=42  Identities=31%  Similarity=0.446  Sum_probs=21.7

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccC
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK  252 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            444555555555555555555555555555555555555543

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=8.8e-11  Score=75.69  Aligned_cols=42  Identities=26%  Similarity=0.400  Sum_probs=21.2

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccC
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK  252 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            444455555555555555555555555555555555555443

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=8.5e-11  Score=75.77  Aligned_cols=41  Identities=20%  Similarity=0.195  Sum_probs=22.0

Q ss_pred             HhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        242 THFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       242 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      +|+++++|.|.+|++.|.....|..|+++|+++++|.|++|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            6 SGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34455555555555555555555555555555555555544

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.7e-10  Score=73.33  Aligned_cols=43  Identities=21%  Similarity=0.294  Sum_probs=37.5

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCc
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHD  281 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  281 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            6677888899999999999999999999999999999998864

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=3.1e-10  Score=73.08  Aligned_cols=43  Identities=19%  Similarity=0.207  Sum_probs=39.2

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCc
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHD  281 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  281 (440)
                      |+++|+++++|.|.+|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6778899999999999999999999999999999999999974

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=8e-11  Score=75.90  Aligned_cols=42  Identities=26%  Similarity=0.377  Sum_probs=23.8

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccC
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK  252 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            555555555555555555555555555555555555555554

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=4.1e-10  Score=70.87  Aligned_cols=42  Identities=14%  Similarity=0.230  Sum_probs=37.6

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECH  280 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  280 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            456788999999999999999999999999999999999884

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=9.2e-11  Score=75.61  Aligned_cols=43  Identities=33%  Similarity=0.446  Sum_probs=23.6

Q ss_pred             hccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccC
Q psy12560        210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK  252 (440)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (440)
                      +|+++|.++++|.|+.|++.|.....|..|+++|+++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            3455555555555555555555555555555555555555554

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=9.8e-11  Score=75.48  Aligned_cols=42  Identities=24%  Similarity=0.373  Sum_probs=21.7

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccC
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK  252 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            444555555555555555555555555555555555555543

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=4.4e-10  Score=72.33  Aligned_cols=43  Identities=23%  Similarity=0.294  Sum_probs=38.9

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCc
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHD  281 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  281 (440)
                      |+++|+++++|.|.+|++.|.....|..|+++|+++++|.|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6678889999999999999999999999999999999999874

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.97  E-value=2.9e-10  Score=71.62  Aligned_cols=42  Identities=31%  Similarity=0.449  Sum_probs=37.1

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccC
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK  252 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            677888889999999999999999999999999999999885

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=8.9e-11  Score=75.68  Aligned_cols=42  Identities=24%  Similarity=0.399  Sum_probs=23.5

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccC
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK  252 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            555555555555555555555555555555555555555554

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.5e-10  Score=72.77  Aligned_cols=44  Identities=20%  Similarity=0.265  Sum_probs=38.0

Q ss_pred             HHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCc
Q psy12560        238 LHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHD  281 (440)
Q Consensus       238 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  281 (440)
                      .|+++|+++++|.|.+|++.|.....|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36677888899999999999999999999999999999998864

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.1e-10  Score=73.08  Aligned_cols=43  Identities=23%  Similarity=0.320  Sum_probs=36.3

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCc
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHD  281 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  281 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6677888888888888888888888888888888888888864

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=8.8e-11  Score=75.69  Aligned_cols=42  Identities=31%  Similarity=0.465  Sum_probs=20.1

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccC
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK  252 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            444444444444444444444444444444444444444443

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3e-10  Score=73.12  Aligned_cols=43  Identities=21%  Similarity=0.305  Sum_probs=37.2

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCc
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHD  281 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  281 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            6677888889999999999999999999999999888988864

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=8.3e-11  Score=75.84  Aligned_cols=42  Identities=21%  Similarity=0.353  Sum_probs=20.7

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccC
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK  252 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            344444455555555555555555555555445444444443

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.1e-10  Score=73.06  Aligned_cols=43  Identities=23%  Similarity=0.299  Sum_probs=36.4

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCc
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHD  281 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  281 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6677888888888888888888888888888888888888863

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.2e-10  Score=74.20  Aligned_cols=41  Identities=27%  Similarity=0.449  Sum_probs=22.0

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCcccc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC  251 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            44555555555555555555555555555555555555554

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=9.5e-11  Score=75.51  Aligned_cols=42  Identities=29%  Similarity=0.444  Sum_probs=20.2

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccC
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK  252 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            444444444444444444444444444444444444444443

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.1e-10  Score=73.06  Aligned_cols=43  Identities=26%  Similarity=0.280  Sum_probs=38.0

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCc
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHD  281 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  281 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6678888999999999999999999999999999999998864

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.96  E-value=4.4e-10  Score=71.93  Aligned_cols=43  Identities=28%  Similarity=0.406  Sum_probs=39.0

Q ss_pred             ccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccc
Q psy12560        213 VTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCD  255 (440)
Q Consensus       213 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~  255 (440)
                      ..|.++++|.|++|++.|.....|..|+++|+++++|.|+.||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            3578889999999999999999999999999999999999986

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.9e-10  Score=71.79  Aligned_cols=43  Identities=23%  Similarity=0.263  Sum_probs=38.6

Q ss_pred             HHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecC
Q psy12560        238 LHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECH  280 (440)
Q Consensus       238 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  280 (440)
                      .|+++|+++++|.|++|++.|.....|..|+++|+++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            3677888999999999999999999999999999999999885

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.6e-10  Score=72.71  Aligned_cols=43  Identities=21%  Similarity=0.257  Sum_probs=37.6

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCc
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHD  281 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  281 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6677888899999999999999999999999999999998864

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.8e-10  Score=73.29  Aligned_cols=43  Identities=19%  Similarity=0.264  Sum_probs=38.0

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCc
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHD  281 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  281 (440)
                      |+++|+++++|.|.+|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6678888999999999999999999999999999999999864

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=9.6e-11  Score=74.69  Aligned_cols=41  Identities=27%  Similarity=0.422  Sum_probs=19.2

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCcccc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC  251 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            44444444444444444444444444444444444444444

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=5.1e-10  Score=72.02  Aligned_cols=42  Identities=21%  Similarity=0.381  Sum_probs=38.2

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECH  280 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  280 (440)
                      |+++|+++++|.|.+|++.|.....|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            667888999999999999999999999999999999999986

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.6e-10  Score=72.73  Aligned_cols=43  Identities=19%  Similarity=0.336  Sum_probs=37.4

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCc
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHD  281 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  281 (440)
                      |+++|+++++|.|.+|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6677888899999999999999999999999999999998864

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=4.3e-10  Score=72.38  Aligned_cols=43  Identities=26%  Similarity=0.492  Sum_probs=27.5

Q ss_pred             hccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccC
Q psy12560        210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK  252 (440)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (440)
                      +|+++|.++++|.|++|++.|.....|..|+++|+++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            4566666666666666666666666666666666666666664

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=1.1e-10  Score=74.45  Aligned_cols=42  Identities=31%  Similarity=0.513  Sum_probs=24.2

Q ss_pred             hccccccCccccccCccCcccCChHHHHHHHHHhCCCCcccc
Q psy12560        210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC  251 (440)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (440)
                      .|+++|.++++|.|++|++.|.....|..|+++|+++++|.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            355555555555555555555555555555555555555555

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=1.3e-10  Score=74.04  Aligned_cols=41  Identities=22%  Similarity=0.375  Sum_probs=20.9

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCcccc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC  251 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            44445555555555555555555555555555555555544

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=1.2e-10  Score=75.04  Aligned_cols=42  Identities=17%  Similarity=0.195  Sum_probs=32.9

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECH  280 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  280 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            566777778888888888888888888888888888887775

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.95  E-value=3.5e-10  Score=75.61  Aligned_cols=52  Identities=13%  Similarity=0.095  Sum_probs=47.8

Q ss_pred             CccccCchhhhhccccccCccccccCccCcccCChHHHHHHHHHhCCCCccc
Q psy12560        199 EKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQ  250 (440)
Q Consensus       199 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~  250 (440)
                      ++.|.....|..|++.|.++++|.|+.|++.|.....|..|+++|+++++|.
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            4678888999999999999999999999999999999999999999998874

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.8e-10  Score=72.64  Aligned_cols=44  Identities=20%  Similarity=0.400  Sum_probs=39.7

Q ss_pred             HHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCc
Q psy12560        238 LHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHD  281 (440)
Q Consensus       238 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  281 (440)
                      +|+++|+++++|.|++|++.|.....|..|+++|+++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36778899999999999999999999999999999999999873

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.9e-10  Score=72.57  Aligned_cols=43  Identities=21%  Similarity=0.264  Sum_probs=37.3

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCc
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHD  281 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  281 (440)
                      |+++|+++++|.|.+|++.|.....|..|+++|+++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6677888889999999999999999999999999989998863

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.2e-10  Score=73.02  Aligned_cols=44  Identities=25%  Similarity=0.327  Sum_probs=37.8

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      ++++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            45678888889999999999999999999888888888988887

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=4.1e-10  Score=71.69  Aligned_cols=42  Identities=19%  Similarity=0.243  Sum_probs=36.6

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECH  280 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  280 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            667788888999999999999999999999999988888884

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.5e-10  Score=72.79  Aligned_cols=43  Identities=21%  Similarity=0.315  Sum_probs=39.1

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCc
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHD  281 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  281 (440)
                      |+++|+++++|.|.+|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6778899999999999999999999999999999999999874

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.2e-10  Score=75.13  Aligned_cols=42  Identities=33%  Similarity=0.505  Sum_probs=22.2

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccC
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK  252 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            445555555555555555555555555555555555555553

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.3e-10  Score=72.88  Aligned_cols=43  Identities=23%  Similarity=0.324  Sum_probs=36.6

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCc
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHD  281 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  281 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            6677888888888888888888888888888888888888864

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.94  E-value=1.7e-10  Score=72.62  Aligned_cols=41  Identities=24%  Similarity=0.426  Sum_probs=19.1

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCcccc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC  251 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            33444444444444444444444444444444444444443

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=4.5e-10  Score=71.50  Aligned_cols=42  Identities=19%  Similarity=0.321  Sum_probs=38.0

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECH  280 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  280 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            677888999999999999999999999999999999999884

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=4.5e-10  Score=72.25  Aligned_cols=43  Identities=19%  Similarity=0.328  Sum_probs=38.0

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCc
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHD  281 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  281 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            6678888999999999999999999999999999999998864

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=1.2e-10  Score=75.02  Aligned_cols=41  Identities=27%  Similarity=0.397  Sum_probs=19.1

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCC-CCcccc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFP-LKRFQC  251 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C  251 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|++ +++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C   44 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPS   44 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSS
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCC
Confidence            44444444444444444444444444444444444 444444

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=3.9e-10  Score=72.57  Aligned_cols=43  Identities=23%  Similarity=0.310  Sum_probs=37.6

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCc
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHD  281 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  281 (440)
                      |+++|+++++|.|.+|++.|.....|..|+++|++++||.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6677888899999999999999999999999999999998863

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=4.4e-10  Score=72.33  Aligned_cols=43  Identities=16%  Similarity=0.280  Sum_probs=35.6

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCc
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHD  281 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  281 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            5567888888888888888888888888888888888888863

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=1.2e-10  Score=73.47  Aligned_cols=41  Identities=22%  Similarity=0.344  Sum_probs=18.0

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCcccc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC  251 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            33444444444444444444444444444444444444443

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=1.7e-10  Score=74.33  Aligned_cols=41  Identities=24%  Similarity=0.392  Sum_probs=19.2

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCcccc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC  251 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP   43 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCS
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            44444444444444444444444444444444444444444

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=1.6e-10  Score=73.71  Aligned_cols=41  Identities=20%  Similarity=0.355  Sum_probs=21.4

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCcccc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC  251 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            44455555555555555555555555555555555555544

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=3.8e-10  Score=71.83  Aligned_cols=42  Identities=14%  Similarity=0.229  Sum_probs=37.3

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECH  280 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  280 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            677888899999999999999999999999999999999884

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=3.9e-10  Score=72.60  Aligned_cols=43  Identities=30%  Similarity=0.407  Sum_probs=37.5

Q ss_pred             cccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        212 QVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       212 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      +++|.++++|.|++|++.|.....|..|+++|+++++|.|++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5678888889999999999999999999999988899999887

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=1.8e-10  Score=74.18  Aligned_cols=41  Identities=24%  Similarity=0.358  Sum_probs=18.5

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCcccc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC  251 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP   43 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            33444444444444444444444444444444444444444

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=2.4e-10  Score=72.78  Aligned_cols=41  Identities=22%  Similarity=0.264  Sum_probs=23.8

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCcccc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC  251 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            45555555555555555555555555555555555555555

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=1.1e-10  Score=73.57  Aligned_cols=41  Identities=29%  Similarity=0.507  Sum_probs=20.5

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCcccc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC  251 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (440)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            44445555555555555555555555555555555444444

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=1.3e-10  Score=73.17  Aligned_cols=41  Identities=24%  Similarity=0.394  Sum_probs=21.6

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCcccc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC  251 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|+|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            44455555555555555555555555555555555555544

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=5.2e-10  Score=71.97  Aligned_cols=43  Identities=19%  Similarity=0.258  Sum_probs=38.7

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCc
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHD  281 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  281 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|+.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6778889999999999999999999999999999999999863

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=2.2e-10  Score=82.26  Aligned_cols=66  Identities=15%  Similarity=0.317  Sum_probs=45.0

Q ss_pred             hhhhhccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcCC
Q psy12560        206 NDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDR  274 (440)
Q Consensus       206 ~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~  274 (440)
                      ..|..|+..|.+++++.|+.|++.|. ...|..|+ .|.+++++.|+.|++.|.. ..|..|+++|.++
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~~-~~l~~H~~~c~~~   68 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVLV-KDLKTHPEVCGRE   68 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEET-TGGGTHHHHBTTB
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCcH-HHHHHHHHHccCC
Confidence            45667777777777777777777773 66777776 6667777777777776653 6667777666654

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=5.1e-10  Score=71.24  Aligned_cols=42  Identities=17%  Similarity=0.310  Sum_probs=35.8

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECH  280 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  280 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            667788888888888888888888888888888888888874

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=3.8e-10  Score=71.01  Aligned_cols=41  Identities=20%  Similarity=0.293  Sum_probs=30.9

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceec
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFEC  279 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C  279 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            55667777777777777777777777777777777777776

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=1.5e-10  Score=74.61  Aligned_cols=41  Identities=24%  Similarity=0.414  Sum_probs=18.3

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCcccc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC  251 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP   43 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSC
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            44444444444444444444444444444444444444444

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.90  E-value=8.7e-10  Score=69.33  Aligned_cols=41  Identities=15%  Similarity=0.119  Sum_probs=37.3

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceec
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFEC  279 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C  279 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|++++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            55678899999999999999999999999999999999987

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=1.1e-09  Score=69.57  Aligned_cols=42  Identities=17%  Similarity=0.179  Sum_probs=37.8

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECH  280 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  280 (440)
                      |+++|+++++|.|.+|++.|.....|..|+++|+++++|.|+
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            566788999999999999999999999999999999999984

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=6.5e-10  Score=69.96  Aligned_cols=41  Identities=22%  Similarity=0.409  Sum_probs=33.7

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceec
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFEC  279 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C  279 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            45677788888888888888888888888888888888876

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=6.2e-10  Score=71.57  Aligned_cols=42  Identities=19%  Similarity=0.279  Sum_probs=37.6

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECH  280 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  280 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            667888899999999999999999999999999999999886

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.89  E-value=5.1e-10  Score=72.75  Aligned_cols=43  Identities=28%  Similarity=0.459  Sum_probs=32.1

Q ss_pred             cccCccccccCccCcccCChHHHHHHHHHhCCCCccccCcccc
Q psy12560        214 THSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDK  256 (440)
Q Consensus       214 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~  256 (440)
                      .|.++++|.|++|++.|.....|..|+++|+++++|.|++|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            3556677777777777777777777777777777777777764

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.88  E-value=7.6e-10  Score=70.06  Aligned_cols=38  Identities=18%  Similarity=0.182  Sum_probs=18.4

Q ss_pred             hCCCCccccCccccccCChHHHHHHHHHhcCCCceecC
Q psy12560        243 HFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECH  280 (440)
Q Consensus       243 h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  280 (440)
                      |+++++|.|..|++.|.....|..|+++|+++++|.|+
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            5 SSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             cCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            34444444444444444444444444444444444443

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=6.1e-10  Score=70.04  Aligned_cols=41  Identities=20%  Similarity=0.334  Sum_probs=36.7

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceec
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFEC  279 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C  279 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            56678899999999999999999999999999999999987

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=2e-10  Score=73.22  Aligned_cols=41  Identities=27%  Similarity=0.524  Sum_probs=20.4

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCcccc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC  251 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            44444455555555555555555555555555544444444

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=6.7e-10  Score=71.45  Aligned_cols=43  Identities=23%  Similarity=0.301  Sum_probs=36.9

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcC-CCceecCc
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKD-RPLFECHD  281 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~-~~~~~C~~  281 (440)
                      |+++|+++++|.|.+|++.|.....|..|+++|++ +++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56778888889999999999999999999988888 88888864

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=8.3e-10  Score=71.01  Aligned_cols=42  Identities=19%  Similarity=0.326  Sum_probs=34.8

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECH  280 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  280 (440)
                      |+++|+++++|.|.+|++.|.....|..|+++|+++++|.|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            456778888888888888888888888888888888888886

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=5.5e-10  Score=71.87  Aligned_cols=43  Identities=23%  Similarity=0.210  Sum_probs=38.3

Q ss_pred             HHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecC
Q psy12560        238 LHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECH  280 (440)
Q Consensus       238 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  280 (440)
                      .|+++|+++++|.|.+|++.|.....|..|+++|+++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3677888999999999999999999999999999999999986

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=3.8e-10  Score=73.34  Aligned_cols=41  Identities=22%  Similarity=0.214  Sum_probs=21.3

Q ss_pred             HhCCCCccccC--ccccccCChHHHHHHHHHhcCCCceecCcC
Q psy12560        242 THFPLKRFQCK--LCDKIFFTLHNMRRHMRIHKDRPLFECHDC  282 (440)
Q Consensus       242 ~h~~~~~~~C~--~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C  282 (440)
                      +|+++++|.|.  .|++.|.....|..|+++|+++++|+|.+|
T Consensus         6 ~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            6 SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             SSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34445555554  455555555555555555555555555544

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=6.9e-10  Score=71.39  Aligned_cols=40  Identities=23%  Similarity=0.311  Sum_probs=19.8

Q ss_pred             ccccCccccccCccCcccCChHHHHHHHHHhCCCCccccC
Q psy12560        213 VTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK  252 (440)
Q Consensus       213 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (440)
                      ++|.++++|.|++|++.|.....|..|+++|+++++|.|.
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            5 SSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            3444445555555555555555555555555555555443

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=6.7e-10  Score=70.67  Aligned_cols=42  Identities=21%  Similarity=0.395  Sum_probs=36.7

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECH  280 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  280 (440)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            667788889999999999999999999999999999998873

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=4.8e-10  Score=71.40  Aligned_cols=41  Identities=32%  Similarity=0.460  Sum_probs=19.7

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCcccc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC  251 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (440)
                      |+++|.++++|.|++|++.|.....|..|+++|+++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            44444444444444444444444444444444444444443

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=2.3e-09  Score=68.89  Aligned_cols=42  Identities=21%  Similarity=0.317  Sum_probs=37.3

Q ss_pred             HHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCc
Q psy12560        240 IRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHD  281 (440)
Q Consensus       240 ~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  281 (440)
                      +++|+++++|.|.+|++.|.....|..|+++|++++||.|.+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            356888999999999999999999999999999999999863

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.7e-09  Score=68.82  Aligned_cols=41  Identities=20%  Similarity=0.185  Sum_probs=36.7

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceec
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFEC  279 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C  279 (440)
                      |+++|+++++|.|.+|++.|.....|..|+++|++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            66788899999999999999999999999999999999886

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=4.9e-10  Score=71.72  Aligned_cols=38  Identities=29%  Similarity=0.387  Sum_probs=19.1

Q ss_pred             hCCCCccccCccccccCChHHHHHHHHHhcCCCceecC
Q psy12560        243 HFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECH  280 (440)
Q Consensus       243 h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  280 (440)
                      |+++++|.|.+|++.|.....|..|+++|+++++|.|+
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            7 GTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            44444555555555555555555555555555555443

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.83  E-value=3.3e-09  Score=67.04  Aligned_cols=41  Identities=20%  Similarity=0.237  Sum_probs=36.6

Q ss_pred             ccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCc
Q psy12560        213 VTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKL  253 (440)
Q Consensus       213 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (440)
                      +.|+++++|.|+.|++.|.....|..|+++|+++++|.|++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            46788899999999999999999999999999999999974

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.7e-09  Score=70.14  Aligned_cols=44  Identities=27%  Similarity=0.410  Sum_probs=38.3

Q ss_pred             ccccccCccccccC--ccCcccCChHHHHHHHHHhCCCCccccCcc
Q psy12560        211 HQVTHSDKKIFVCE--NCGKSFKRKYDLALHIRTHFPLKRFQCKLC  254 (440)
Q Consensus       211 H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (440)
                      |.++|.++++|.|.  .|++.|.....|..|+++|+++++|+|.+|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56778888899997  899999999999999999999999999887

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.7e-09  Score=69.13  Aligned_cols=43  Identities=33%  Similarity=0.444  Sum_probs=37.0

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCc
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKL  253 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (440)
                      +.++|.++++|.|++|++.|.....|..|+++|+++++|.|++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            4567888889999999999999999999999999999998864

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=1.3e-09  Score=68.17  Aligned_cols=37  Identities=22%  Similarity=0.328  Sum_probs=21.1

Q ss_pred             hCCCCccccCccccccCChHHHHHHHHHhcCCCceec
Q psy12560        243 HFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFEC  279 (440)
Q Consensus       243 h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C  279 (440)
                      |+++++|.|++|++.|.....|..|+++|++++||.|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             cCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            4555555555555555555555555555555555554

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=3.2e-10  Score=81.42  Aligned_cols=64  Identities=19%  Similarity=0.286  Sum_probs=56.8

Q ss_pred             HHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHHHHHHhhc
Q psy12560        234 YDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH  300 (440)
Q Consensus       234 ~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~H  300 (440)
                      ..|..|+++|.+++++.|..|++.|. ...|..|+ .|.++++|.|+.|++.|. ...|..|++.+.
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~   66 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCG   66 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBT
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHcc
Confidence            34667888899999999999999995 89999999 999999999999999988 599999998433

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=5.2e-09  Score=65.29  Aligned_cols=39  Identities=33%  Similarity=0.586  Sum_probs=30.1

Q ss_pred             ccccCccccccCccCcccCChHHHHHHHHHhCCCCcccc
Q psy12560        213 VTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC  251 (440)
Q Consensus       213 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (440)
                      ++|.++++|.|++|++.|.....|..|+++|+++++|.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            356677778888888888888888888888888777776

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.67  E-value=7.4e-10  Score=82.04  Aligned_cols=59  Identities=10%  Similarity=0.219  Sum_probs=40.2

Q ss_pred             ccccccCccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcC
Q psy12560        211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKD  273 (440)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  273 (440)
                      |.++|.++++|.|+.|++.|.....|..|+++|+++++|+|..|.    ....|..|.++|.+
T Consensus        16 ~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           16 GNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             cccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhccccc
Confidence            344577777777777777777777777777777777777776554    33445556666655

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.64  E-value=1.5e-08  Score=62.41  Aligned_cols=36  Identities=19%  Similarity=0.551  Sum_probs=19.9

Q ss_pred             CCCCccccCccccccCChHHHHHHHHHhcCCCceec
Q psy12560        244 FPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFEC  279 (440)
Q Consensus       244 ~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C  279 (440)
                      +++++|.|.+|++.|.....|..|+++|+++++|.+
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            445555555555555555555555555555555543

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.55  E-value=4.4e-08  Score=66.90  Aligned_cols=35  Identities=23%  Similarity=0.406  Sum_probs=15.0

Q ss_pred             CCCccccCc--cccccCChHHHHHHH-HHhcCCCceec
Q psy12560        245 PLKRFQCKL--CDKIFFTLHNMRRHM-RIHKDRPLFEC  279 (440)
Q Consensus       245 ~~~~~~C~~--C~~~f~~~~~L~~H~-~~H~~~~~~~C  279 (440)
                      +++||+|.+  |+++|.....|..|+ ++|++++||.|
T Consensus        24 GEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~   61 (73)
T 1x3c_A           24 PYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFS   61 (73)
T ss_dssp             SSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCC
T ss_pred             CCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccc
Confidence            344444432  444444444444443 23444444443

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=2.1e-08  Score=60.81  Aligned_cols=29  Identities=17%  Similarity=0.535  Sum_probs=11.3

Q ss_pred             CCCccccCccccccCChHHHHHHHHHhcC
Q psy12560        245 PLKRFQCKLCDKIFFTLHNMRRHMRIHKD  273 (440)
Q Consensus       245 ~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  273 (440)
                      ++++|.|.+|++.|.....|..|+++|++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~h~~   34 (37)
T 2elo_A            6 SGRSYSCPVCEKSFSEDRLIKSHIKTNHP   34 (37)
T ss_dssp             CCCCCEETTTTEECSSHHHHHHHHHHHCS
T ss_pred             CCCCcCCCCCCCccCCHHHHHHHHHHHcC
Confidence            33333333333333333333333333333

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.54  E-value=2e-08  Score=60.94  Aligned_cols=23  Identities=48%  Similarity=0.865  Sum_probs=8.2

Q ss_pred             CccccccCccCcccCChHHHHHH
Q psy12560        217 DKKIFVCENCGKSFKRKYDLALH  239 (440)
Q Consensus       217 ~~~~~~C~~C~~~f~~~~~l~~H  239 (440)
                      ++++|.|+.|++.|.....|..|
T Consensus         8 ~~k~~~C~~C~k~f~~~~~l~~H   30 (37)
T 1p7a_A            8 GIKPFQCPDCDRSFSRSDHLALH   30 (37)
T ss_dssp             CSSSBCCTTTCCCBSSHHHHHHH
T ss_pred             CCCCccCCCCCcccCcHHHHHHH
Confidence            33333333333333333333333

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.51  E-value=5.6e-08  Score=59.70  Aligned_cols=37  Identities=16%  Similarity=0.285  Sum_probs=28.1

Q ss_pred             ccCccccccCccCcccCChHHHHHHHHHhCCCCcccc
Q psy12560        215 HSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC  251 (440)
Q Consensus       215 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (440)
                      |.++++|.|+.|++.|.....|..|+++|+++++|.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            4566778888888888888888888888888777765

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.50  E-value=6.3e-08  Score=57.73  Aligned_cols=29  Identities=28%  Similarity=0.504  Sum_probs=12.0

Q ss_pred             CCCccccCccccccCChHHHHHHHHHhcC
Q psy12560        245 PLKRFQCKLCDKIFFTLHNMRRHMRIHKD  273 (440)
Q Consensus       245 ~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  273 (440)
                      ++++|.|.+|++.|.....|..|+++|++
T Consensus         4 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~   32 (35)
T 2elx_A            4 GSSGYVCALCLKKFVSSIRLRSHIREVHG   32 (35)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHTSC
T ss_pred             CCCCeECCCCcchhCCHHHHHHHHHHHcC
Confidence            33444444444444444444444444433

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.49  E-value=7.3e-08  Score=58.32  Aligned_cols=36  Identities=28%  Similarity=0.411  Sum_probs=30.5

Q ss_pred             HHHHhCCCCccccCccccccCChHHHHHHHHHhcCC
Q psy12560        239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDR  274 (440)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~  274 (440)
                      |+++|+++++|.|+.|++.|.....|..|+++|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            567788888999999999999999999998888764

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=7.9e-08  Score=58.16  Aligned_cols=36  Identities=28%  Similarity=0.485  Sum_probs=31.6

Q ss_pred             ccccCccccccCccCcccCChHHHHHHHHHhCCCCc
Q psy12560        213 VTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKR  248 (440)
Q Consensus       213 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  248 (440)
                      ++|.++++|.|+.|++.|.....|..|+++|++++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            567888999999999999999999999999988764

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.48  E-value=9.2e-08  Score=56.29  Aligned_cols=30  Identities=23%  Similarity=0.514  Sum_probs=16.2

Q ss_pred             ccccCccccccCChHHHHHHHHHhcCCCce
Q psy12560        248 RFQCKLCDKIFFTLHNMRRHMRIHKDRPLF  277 (440)
Q Consensus       248 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~  277 (440)
                      ||.|++|++.|.....|..|+++|+++++|
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            455555555555555555555555555554

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.47  E-value=6.9e-08  Score=57.61  Aligned_cols=30  Identities=33%  Similarity=0.711  Sum_probs=12.7

Q ss_pred             CCCccccCccccccCChHHHHHHHHHhcCC
Q psy12560        245 PLKRFQCKLCDKIFFTLHNMRRHMRIHKDR  274 (440)
Q Consensus       245 ~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~  274 (440)
                      ++++|.|.+|++.|.....|..|+++|+++
T Consensus         4 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   33 (35)
T 1srk_A            4 GKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHHHcCCC
Confidence            344444444444444444444444444433

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.42  E-value=1.9e-07  Score=63.76  Aligned_cols=39  Identities=21%  Similarity=0.214  Sum_probs=33.8

Q ss_pred             ccCccccccCc--cCcccCChHHHHHHH-HHhCCCCccccCc
Q psy12560        215 HSDKKIFVCEN--CGKSFKRKYDLALHI-RTHFPLKRFQCKL  253 (440)
Q Consensus       215 h~~~~~~~C~~--C~~~f~~~~~l~~H~-~~h~~~~~~~C~~  253 (440)
                      .++++||.|..  |+++|...+.|..|+ ++|++++||.|..
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            56889999965  999999999999997 6899999998864

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.41  E-value=1.7e-07  Score=56.92  Aligned_cols=29  Identities=17%  Similarity=0.366  Sum_probs=12.8

Q ss_pred             CCCccccCc--cccccCChHHHHHHHHHhcC
Q psy12560        245 PLKRFQCKL--CDKIFFTLHNMRRHMRIHKD  273 (440)
Q Consensus       245 ~~~~~~C~~--C~~~f~~~~~L~~H~~~H~~  273 (440)
                      +++||+|++  |++.|.....|..|+++|++
T Consensus         6 gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            6 SGILLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             CCCCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            344444433  44444444444444444443

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.41  E-value=1.9e-07  Score=55.58  Aligned_cols=34  Identities=21%  Similarity=0.375  Sum_probs=30.0

Q ss_pred             HhcCCCceecCcCccccCChHHHHHHHHhhcCCC
Q psy12560        270 IHKDRPLFECHDCHKSFTRKDNLERHVKSIHLED  303 (440)
Q Consensus       270 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~  303 (440)
                      +|+++++|.|..|++.|.+...|..|++.+++++
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            3789999999999999999999999999766554

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.39  E-value=2.1e-08  Score=74.18  Aligned_cols=54  Identities=20%  Similarity=0.359  Sum_probs=43.9

Q ss_pred             HHHhCCCCccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHHHHHH
Q psy12560        240 IRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVK  297 (440)
Q Consensus       240 ~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~  297 (440)
                      .++|+++++|.|++|++.|.....|..|+++|++++||+|..|.    ....|..|.+
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~   70 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQK   70 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCC
T ss_pred             ccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhc
Confidence            44688999999999999999999999999999999999997765    3444445544

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.38  E-value=2.9e-07  Score=54.10  Aligned_cols=32  Identities=34%  Similarity=0.500  Sum_probs=27.3

Q ss_pred             cccccCccCcccCChHHHHHHHHHhCCCCccc
Q psy12560        219 KIFVCENCGKSFKRKYDLALHIRTHFPLKRFQ  250 (440)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~  250 (440)
                      +||.|+.|++.|.....|..|+++|+++++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            47888889999988889999988888888875

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.35  E-value=2.9e-07  Score=54.76  Aligned_cols=34  Identities=29%  Similarity=0.372  Sum_probs=29.8

Q ss_pred             HhcCCCceecCcCccccCChHHHHHHHHhhcCCC
Q psy12560        270 IHKDRPLFECHDCHKSFTRKDNLERHVKSIHLED  303 (440)
Q Consensus       270 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~  303 (440)
                      +|.++++|.|.+|++.|.+...|..|++.+++++
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            3789999999999999999999999999655444

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.34  E-value=2.1e-07  Score=56.59  Aligned_cols=34  Identities=24%  Similarity=0.316  Sum_probs=18.2

Q ss_pred             CCCCccccC--ccccccCChHHHHHHHHHhcCCCce
Q psy12560        244 FPLKRFQCK--LCDKIFFTLHNMRRHMRIHKDRPLF  277 (440)
Q Consensus       244 ~~~~~~~C~--~C~~~f~~~~~L~~H~~~H~~~~~~  277 (440)
                      +++++|.|.  .|++.|.....|..|+++|+++++|
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            345555555  3555555555555555555555544

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.33  E-value=2.8e-07  Score=55.23  Aligned_cols=28  Identities=25%  Similarity=0.443  Sum_probs=11.0

Q ss_pred             CCCccccCccccccCChHHHHHHHHHhc
Q psy12560        245 PLKRFQCKLCDKIFFTLHNMRRHMRIHK  272 (440)
Q Consensus       245 ~~~~~~C~~C~~~f~~~~~L~~H~~~H~  272 (440)
                      ++++|.|.+|++.|.....|..|+++|+
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elt_A            6 SGKPYKCPQCSYASAIKANLNVHLRKHT   33 (36)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCcccCCHHHHHHHHHHcc
Confidence            3333333333333333333333333333

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.32  E-value=4e-07  Score=55.25  Aligned_cols=33  Identities=30%  Similarity=0.571  Sum_probs=28.3

Q ss_pred             cccCccccccCc--cCcccCChHHHHHHHHHhCCC
Q psy12560        214 THSDKKIFVCEN--CGKSFKRKYDLALHIRTHFPL  246 (440)
Q Consensus       214 ~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~  246 (440)
                      .+++++||.|+.  |++.|...+.|..|+++|+++
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            367888999976  999999999999999999875

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.31  E-value=3.4e-07  Score=54.90  Aligned_cols=28  Identities=32%  Similarity=0.602  Sum_probs=10.9

Q ss_pred             CCCccccCccccccCChHHHHHHHHHhc
Q psy12560        245 PLKRFQCKLCDKIFFTLHNMRRHMRIHK  272 (440)
Q Consensus       245 ~~~~~~C~~C~~~f~~~~~L~~H~~~H~  272 (440)
                      ++++|+|.+|++.|.....|..|+++|+
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elq_A            6 SGKPFKCSLCEYATRSKSNLKAHMNRHS   33 (36)
T ss_dssp             CCCSEECSSSSCEESCHHHHHHHHHHSS
T ss_pred             CCCCccCCCCCchhCCHHHHHHHHHHhc
Confidence            3333333333333333333333333333

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.31  E-value=1.9e-07  Score=56.44  Aligned_cols=31  Identities=23%  Similarity=0.540  Sum_probs=13.7

Q ss_pred             hCCCCccccCccccccCCh-HHHHHHHHHhcC
Q psy12560        243 HFPLKRFQCKLCDKIFFTL-HNMRRHMRIHKD  273 (440)
Q Consensus       243 h~~~~~~~C~~C~~~f~~~-~~L~~H~~~H~~  273 (440)
                      |+++++|.|++|++.|... ..|..|+++|++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~   35 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEG   35 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHHHHT
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHhcCC
Confidence            3344444444444444444 444444444443

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.28  E-value=1.7e-07  Score=56.78  Aligned_cols=25  Identities=36%  Similarity=0.656  Sum_probs=10.2

Q ss_pred             hcCCCceecCcCccccCChHHHHHH
Q psy12560        271 HKDRPLFECHDCHKSFTRKDNLERH  295 (440)
Q Consensus       271 H~~~~~~~C~~C~~~f~~~~~l~~H  295 (440)
                      |++++||.|..|++.|.++..|..|
T Consensus         4 H~~~k~~~C~~C~k~f~~~~~L~~H   28 (37)
T 2elm_A            4 GSSGHLYYCSQCHYSSITKNCLKRH   28 (37)
T ss_dssp             SSSSCEEECSSSSCEEECHHHHHHH
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHH
Confidence            3333444444444444444444444

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.28  E-value=5.9e-07  Score=53.75  Aligned_cols=28  Identities=25%  Similarity=0.520  Sum_probs=11.4

Q ss_pred             CCCccccCccccccCChHHHHHHHHHhc
Q psy12560        245 PLKRFQCKLCDKIFFTLHNMRRHMRIHK  272 (440)
Q Consensus       245 ~~~~~~C~~C~~~f~~~~~L~~H~~~H~  272 (440)
                      ++++|.|.+|++.|.....|..|+++|+
T Consensus         6 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elr_A            6 SGKTHLCDMCGKKFKSKGTLKSHKLLHT   33 (36)
T ss_dssp             CCSSCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCCCeecCcCCCCcCchHHHHHHHHHhc
Confidence            3334444444444444444444444443

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=3.9e-07  Score=54.62  Aligned_cols=26  Identities=27%  Similarity=0.623  Sum_probs=10.1

Q ss_pred             CCccccCccccccCChHHHHHHHHHh
Q psy12560        246 LKRFQCKLCDKIFFTLHNMRRHMRIH  271 (440)
Q Consensus       246 ~~~~~C~~C~~~f~~~~~L~~H~~~H  271 (440)
                      +++|.|.+|++.|.....|..|+++|
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elv_A            7 GLLYDCHICERKFKNELDRDRHMLVH   32 (36)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHTTT
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHHh
Confidence            33333333333333333333333333

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.25  E-value=6.1e-07  Score=53.74  Aligned_cols=28  Identities=39%  Similarity=0.834  Sum_probs=11.8

Q ss_pred             CCCccccCccccccCChHHHHHHHHHhc
Q psy12560        245 PLKRFQCKLCDKIFFTLHNMRRHMRIHK  272 (440)
Q Consensus       245 ~~~~~~C~~C~~~f~~~~~L~~H~~~H~  272 (440)
                      ++++|.|++|++.|.....|..|+++|+
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2els_A            6 SGKIFTCEYCNKVFKFKHSLQAHLRIHT   33 (36)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHC
T ss_pred             CCCCEECCCCCceeCCHHHHHHHHHHhC
Confidence            3344444444444444444444444443

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.24  E-value=7.6e-07  Score=53.24  Aligned_cols=34  Identities=29%  Similarity=0.468  Sum_probs=29.1

Q ss_pred             cccCccccccCccCcccCChHHHHHHHHHhCCCC
Q psy12560        214 THSDKKIFVCENCGKSFKRKYDLALHIRTHFPLK  247 (440)
Q Consensus       214 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  247 (440)
                      +|.++++|.|+.|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            4778889999999999999999999999988763

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.23  E-value=4.2e-07  Score=54.30  Aligned_cols=23  Identities=26%  Similarity=0.509  Sum_probs=9.3

Q ss_pred             CCccccCccccccCChHHHHHHH
Q psy12560        246 LKRFQCKLCDKIFFTLHNMRRHM  268 (440)
Q Consensus       246 ~~~~~C~~C~~~f~~~~~L~~H~  268 (440)
                      ++||.|+.|++.|...+.|.+|+
T Consensus         6 ekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            6 PARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCCEETTTTEECSCHHHHHHHH
T ss_pred             ccCeECCCCCCccCCHhHccCcC
Confidence            33444444444444444444443

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.23  E-value=6.3e-07  Score=54.13  Aligned_cols=31  Identities=19%  Similarity=0.388  Sum_probs=15.2

Q ss_pred             hCCCCccccCccccccCChHHHHHH-HHHhcC
Q psy12560        243 HFPLKRFQCKLCDKIFFTLHNMRRH-MRIHKD  273 (440)
Q Consensus       243 h~~~~~~~C~~C~~~f~~~~~L~~H-~~~H~~  273 (440)
                      |++++||+|+.|++.|.....|..| +++|++
T Consensus         4 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            4 GSSGHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             SSSSCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            4444455555555555555555555 444443

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.22  E-value=8.1e-07  Score=53.18  Aligned_cols=34  Identities=29%  Similarity=0.437  Sum_probs=28.4

Q ss_pred             cccCccccccCccCcccCChHHHHHHHHHhCCCC
Q psy12560        214 THSDKKIFVCENCGKSFKRKYDLALHIRTHFPLK  247 (440)
Q Consensus       214 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  247 (440)
                      .|.++++|.|++|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            4678888899999999999899999988887653

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.21  E-value=1.2e-06  Score=52.42  Aligned_cols=34  Identities=35%  Similarity=0.486  Sum_probs=29.0

Q ss_pred             cccCccccccCccCcccCChHHHHHHHHHhCCCC
Q psy12560        214 THSDKKIFVCENCGKSFKRKYDLALHIRTHFPLK  247 (440)
Q Consensus       214 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  247 (440)
                      .|.++++|.|++|++.|.....|..|+++|++++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            4677888999999999999999999999988764

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.21  E-value=5.1e-07  Score=53.92  Aligned_cols=26  Identities=27%  Similarity=0.474  Sum_probs=24.6

Q ss_pred             hcCCCceecCcCccccCChHHHHHHH
Q psy12560        271 HKDRPLFECHDCHKSFTRKDNLERHV  296 (440)
Q Consensus       271 H~~~~~~~C~~C~~~f~~~~~l~~H~  296 (440)
                      +.+++||.|+.||++|.+++.|.+|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            46899999999999999999999998

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.20  E-value=6.7e-07  Score=54.28  Aligned_cols=35  Identities=37%  Similarity=0.683  Sum_probs=28.4

Q ss_pred             ccCccccccC--ccCcccCChHHHHHHHHHhCCCCcc
Q psy12560        215 HSDKKIFVCE--NCGKSFKRKYDLALHIRTHFPLKRF  249 (440)
Q Consensus       215 h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~  249 (440)
                      |+++++|.|+  .|++.|...+.|..|+++|+++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4567888888  5888888888888888888888776

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.20  E-value=5.9e-07  Score=57.94  Aligned_cols=31  Identities=19%  Similarity=0.410  Sum_probs=20.8

Q ss_pred             HhcCCCceecCcCccccCChHHHHHHHHhhc
Q psy12560        270 IHKDRPLFECHDCHKSFTRKDNLERHVKSIH  300 (440)
Q Consensus       270 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~H  300 (440)
                      +|+++++|.|.+|++.|.....|..|++..|
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H   31 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSH   31 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSS
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhc
Confidence            3666777777777777777777777776333

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.19  E-value=6.6e-07  Score=53.56  Aligned_cols=33  Identities=24%  Similarity=0.437  Sum_probs=26.1

Q ss_pred             cccCccccccCccCcccCChHHHHHHHHHhCCC
Q psy12560        214 THSDKKIFVCENCGKSFKRKYDLALHIRTHFPL  246 (440)
Q Consensus       214 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  246 (440)
                      .|.++++|.|+.|++.|.....|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            466777888888888888888888888887765

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.19  E-value=6.5e-07  Score=54.00  Aligned_cols=35  Identities=29%  Similarity=0.444  Sum_probs=28.3

Q ss_pred             ccccCccccccCccCcccCCh-HHHHHHHHHhCCCC
Q psy12560        213 VTHSDKKIFVCENCGKSFKRK-YDLALHIRTHFPLK  247 (440)
Q Consensus       213 ~~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~  247 (440)
                      ++|.++++|.|+.|++.|... ..|..|+++|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            357778888888888888888 88888888887653

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.15  E-value=1.5e-06  Score=51.94  Aligned_cols=34  Identities=47%  Similarity=0.696  Sum_probs=28.3

Q ss_pred             cccCccccccCccCcccCChHHHHHHHHHhCCCC
Q psy12560        214 THSDKKIFVCENCGKSFKRKYDLALHIRTHFPLK  247 (440)
Q Consensus       214 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  247 (440)
                      .|.++++|.|+.|++.|.....|..|+++|++++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            3567788999999999999999999999888763

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.14  E-value=8.8e-07  Score=56.77  Aligned_cols=39  Identities=38%  Similarity=0.690  Sum_probs=26.1

Q ss_pred             hhhccccccCccccccC--ccCcccCChHHHHHHHHHhCCC
Q psy12560        208 LIKHQVTHSDKKIFVCE--NCGKSFKRKYDLALHIRTHFPL  246 (440)
Q Consensus       208 l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~  246 (440)
                      +..|...|.++++|.|+  .|++.|...+.|..|+++|+++
T Consensus         6 ~~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A            6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             SGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             HHHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            34445557777777774  5777777777777777777665

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.12  E-value=1.3e-06  Score=52.64  Aligned_cols=29  Identities=28%  Similarity=0.659  Sum_probs=12.7

Q ss_pred             CCCccccCc--cccccCChHHHHHHHHHhcC
Q psy12560        245 PLKRFQCKL--CDKIFFTLHNMRRHMRIHKD  273 (440)
Q Consensus       245 ~~~~~~C~~--C~~~f~~~~~L~~H~~~H~~  273 (440)
                      ++++|.|.+  |++.|.....|..|+++|++
T Consensus         5 ~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~   35 (37)
T 1va1_A            5 KKKQHICHIQGCGKVYGKTSHLRAHLRWHTG   35 (37)
T ss_dssp             SCCCEECCSTTCCCEESCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            344444442  44444444444444444443

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.06  E-value=1.2e-07  Score=55.31  Aligned_cols=30  Identities=20%  Similarity=0.433  Sum_probs=15.2

Q ss_pred             ccccCccccccCChHHHHHHHHHhcCCCce
Q psy12560        248 RFQCKLCDKIFFTLHNMRRHMRIHKDRPLF  277 (440)
Q Consensus       248 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~  277 (440)
                      ||.|.+|++.|.....|..|+++|++++||
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            445555555555555555555555554443

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.06  E-value=2.3e-06  Score=48.48  Aligned_cols=25  Identities=28%  Similarity=0.675  Sum_probs=10.1

Q ss_pred             ccccCccccccCChHHHHHHHHHhc
Q psy12560        248 RFQCKLCDKIFFTLHNMRRHMRIHK  272 (440)
Q Consensus       248 ~~~C~~C~~~f~~~~~L~~H~~~H~  272 (440)
                      +|.|..|++.|.....|..|+++|+
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~~h~   27 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLETHD   27 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHTTC
T ss_pred             CccCCCCCcccCCHHHHHHHHHHhc
Confidence            3344444444444444444444333

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.05  E-value=1.7e-06  Score=55.67  Aligned_cols=33  Identities=18%  Similarity=0.330  Sum_probs=19.5

Q ss_pred             hCCCCccccCccccccCChHHHHHHHH-HhcCCC
Q psy12560        243 HFPLKRFQCKLCDKIFFTLHNMRRHMR-IHKDRP  275 (440)
Q Consensus       243 h~~~~~~~C~~C~~~f~~~~~L~~H~~-~H~~~~  275 (440)
                      |+++++|.|.+|++.|.....|..|++ +|+++.
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            556666666666666666666666666 565543

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.05  E-value=3.1e-06  Score=47.54  Aligned_cols=24  Identities=33%  Similarity=0.873  Sum_probs=10.0

Q ss_pred             cccCccccccCChHHHHHHHHHhc
Q psy12560        249 FQCKLCDKIFFTLHNMRRHMRIHK  272 (440)
Q Consensus       249 ~~C~~C~~~f~~~~~L~~H~~~H~  272 (440)
                      |.|++|++.|.....|..|+++|+
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 1ard_A            3 FVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             eECCCCCcccCCHHHHHHHHHHhc
Confidence            344444444444444444444443

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.05  E-value=4.1e-06  Score=57.65  Aligned_cols=30  Identities=23%  Similarity=0.462  Sum_probs=18.2

Q ss_pred             hcCCCceecCcCccccCChHHHHHHHHhhc
Q psy12560        271 HKDRPLFECHDCHKSFTRKDNLERHVKSIH  300 (440)
Q Consensus       271 H~~~~~~~C~~C~~~f~~~~~l~~H~~~~H  300 (440)
                      |.+++||.|..|++.|.++..|.+|++.+.
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   37 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHG   37 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhC
Confidence            445566666666666666666666666433

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.03  E-value=1e-06  Score=51.16  Aligned_cols=31  Identities=26%  Similarity=0.415  Sum_probs=23.6

Q ss_pred             CcccCCCCCccccCchhhhhccccccCcccc
Q psy12560        191 KNYHCDICEKSFIEKNDLIKHQVTHSDKKIF  221 (440)
Q Consensus       191 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  221 (440)
                      ++|.|+.|++.|.....|..|+++|++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            4677888888888778888888777777765

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.02  E-value=3.5e-07  Score=58.72  Aligned_cols=33  Identities=33%  Similarity=0.628  Sum_probs=18.1

Q ss_pred             HhCCCCccccC--ccccccCChHHHHHHHHHhcCC
Q psy12560        242 THFPLKRFQCK--LCDKIFFTLHNMRRHMRIHKDR  274 (440)
Q Consensus       242 ~h~~~~~~~C~--~C~~~f~~~~~L~~H~~~H~~~  274 (440)
                      .|+++++|.|.  .|++.|.....|..|+++|+++
T Consensus        12 ~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             ccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            35555555553  4555555555555555555544

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.02  E-value=2.3e-06  Score=48.10  Aligned_cols=26  Identities=27%  Similarity=0.718  Sum_probs=11.6

Q ss_pred             ccccCccccccCChHHHHHHHHHhcC
Q psy12560        248 RFQCKLCDKIFFTLHNMRRHMRIHKD  273 (440)
Q Consensus       248 ~~~C~~C~~~f~~~~~L~~H~~~H~~  273 (440)
                      +|.|+.|++.|.....|..|+++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcC
Confidence            34444444444444444444444443

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.99  E-value=4.2e-06  Score=47.34  Aligned_cols=23  Identities=22%  Similarity=0.612  Sum_probs=8.7

Q ss_pred             cccCccccccCChHHHHHHHHHh
Q psy12560        249 FQCKLCDKIFFTLHNMRRHMRIH  271 (440)
Q Consensus       249 ~~C~~C~~~f~~~~~L~~H~~~H  271 (440)
                      |.|.+|++.|.....|..|+++|
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~h   25 (30)
T 1klr_A            3 YQCQYCEFRSADSSNLKTHIKTK   25 (30)
T ss_dssp             CCCSSSSCCCSCSHHHHHHHHHH
T ss_pred             ccCCCCCCccCCHHHHHHHHHHH
Confidence            33333333333333333333333

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.99  E-value=3.3e-06  Score=47.40  Aligned_cols=26  Identities=42%  Similarity=0.876  Sum_probs=12.3

Q ss_pred             ccccCccccccCChHHHHHHHHHhcC
Q psy12560        248 RFQCKLCDKIFFTLHNMRRHMRIHKD  273 (440)
Q Consensus       248 ~~~C~~C~~~f~~~~~L~~H~~~H~~  273 (440)
                      +|.|.+|++.|.....|..|+++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSG   27 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHT
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcC
Confidence            34444444444444444444444443

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.97  E-value=3.8e-06  Score=50.57  Aligned_cols=33  Identities=30%  Similarity=0.569  Sum_probs=27.1

Q ss_pred             ccCccccccCc--cCcccCChHHHHHHHHHhCCCC
Q psy12560        215 HSDKKIFVCEN--CGKSFKRKYDLALHIRTHFPLK  247 (440)
Q Consensus       215 h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~  247 (440)
                      |+++++|.|.+  |++.|...+.|..|+++|++++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            66788888884  8888988888999988887753

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.97  E-value=4e-06  Score=46.31  Aligned_cols=23  Identities=17%  Similarity=0.476  Sum_probs=11.0

Q ss_pred             CceecCcCccccCChHHHHHHHH
Q psy12560        275 PLFECHDCHKSFTRKDNLERHVK  297 (440)
Q Consensus       275 ~~~~C~~C~~~f~~~~~l~~H~~  297 (440)
                      +||.|..||+.|.....|..|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLR   24 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHH
T ss_pred             cCccCCCcChhhCCHHHHHHHHH
Confidence            34444444444444444444444

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.97  E-value=3.2e-06  Score=47.13  Aligned_cols=22  Identities=32%  Similarity=0.741  Sum_probs=10.5

Q ss_pred             ceecCcCccccCChHHHHHHHH
Q psy12560        276 LFECHDCHKSFTRKDNLERHVK  297 (440)
Q Consensus       276 ~~~C~~C~~~f~~~~~l~~H~~  297 (440)
                      +|.|..|++.|.+...|..|++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYR   24 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHT
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            4444444444444444444444

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.96  E-value=4.9e-06  Score=48.06  Aligned_cols=27  Identities=33%  Similarity=0.817  Sum_probs=12.9

Q ss_pred             CccccC--ccccccCChHHHHHHHHHhcC
Q psy12560        247 KRFQCK--LCDKIFFTLHNMRRHMRIHKD  273 (440)
Q Consensus       247 ~~~~C~--~C~~~f~~~~~L~~H~~~H~~  273 (440)
                      ++|.|.  .|++.|.....|..|+++|++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~   30 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccC
Confidence            344444  444444444444444444444

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.96  E-value=6.7e-06  Score=46.09  Aligned_cols=29  Identities=41%  Similarity=0.748  Sum_probs=23.7

Q ss_pred             cccccCccCcccCChHHHHHHHHHhCCCC
Q psy12560        219 KIFVCENCGKSFKRKYDLALHIRTHFPLK  247 (440)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  247 (440)
                      ++|.|+.|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            36888888888888888888888887653

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.96  E-value=3.9e-06  Score=47.02  Aligned_cols=26  Identities=35%  Similarity=0.772  Sum_probs=11.8

Q ss_pred             ccccCccccccCChHHHHHHHHHhcC
Q psy12560        248 RFQCKLCDKIFFTLHNMRRHMRIHKD  273 (440)
Q Consensus       248 ~~~C~~C~~~f~~~~~L~~H~~~H~~  273 (440)
                      +|.|+.|++.|.....|..|+++|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            34444444444444444444444443

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.94  E-value=5.1e-06  Score=46.96  Aligned_cols=28  Identities=32%  Similarity=0.585  Sum_probs=22.2

Q ss_pred             cccccCccCcccCChHHHHHHHHHhCCC
Q psy12560        219 KIFVCENCGKSFKRKYDLALHIRTHFPL  246 (440)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  246 (440)
                      ++|.|+.|++.|.....|..|+++|+++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            5778888888888888888888887765

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.94  E-value=3.2e-06  Score=46.78  Aligned_cols=23  Identities=13%  Similarity=0.491  Sum_probs=12.3

Q ss_pred             CceecCcCccccCChHHHHHHHH
Q psy12560        275 PLFECHDCHKSFTRKDNLERHVK  297 (440)
Q Consensus       275 ~~~~C~~C~~~f~~~~~l~~H~~  297 (440)
                      +||.|+.||+.|...+.|..|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMR   24 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHH
Confidence            34555555555555555555554

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.93  E-value=5e-06  Score=47.64  Aligned_cols=21  Identities=33%  Similarity=0.637  Sum_probs=9.3

Q ss_pred             ccccccCChHHHHHHHHHhcC
Q psy12560        253 LCDKIFFTLHNMRRHMRIHKD  273 (440)
Q Consensus       253 ~C~~~f~~~~~L~~H~~~H~~  273 (440)
                      .|++.|.....|..|+++|++
T Consensus         9 ~C~k~f~~~~~L~~H~~~H~~   29 (31)
T 1sp2_A            9 YCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             TCCCBCSSHHHHHHHHTTTSC
T ss_pred             CCCcccCCHhHHHHHHHHhcC
Confidence            444444444444444444443

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.92  E-value=7.9e-06  Score=46.13  Aligned_cols=29  Identities=24%  Similarity=0.456  Sum_probs=23.6

Q ss_pred             cccccCccCcccCChHHHHHHHHHhCCCC
Q psy12560        219 KIFVCENCGKSFKRKYDLALHIRTHFPLK  247 (440)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  247 (440)
                      ++|.|+.|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            36888888888888888888888887765

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.14  E-value=1.5e-06  Score=49.04  Aligned_cols=24  Identities=33%  Similarity=0.682  Sum_probs=10.6

Q ss_pred             cccCccccccCChHHHHHHHHHhc
Q psy12560        249 FQCKLCDKIFFTLHNMRRHMRIHK  272 (440)
Q Consensus       249 ~~C~~C~~~f~~~~~L~~H~~~H~  272 (440)
                      |.|..|++.|.....|..|+++|+
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2lvt_A            3 CQCVMCGKAFTQASSLIAHVRQHT   26 (29)
Confidence            444444444444444444444443

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.11  E-value=1.7e-06  Score=49.10  Aligned_cols=25  Identities=32%  Similarity=0.740  Sum_probs=11.1

Q ss_pred             ccccCccccccCChHHHHHHHHHhc
Q psy12560        248 RFQCKLCDKIFFTLHNMRRHMRIHK  272 (440)
Q Consensus       248 ~~~C~~C~~~f~~~~~L~~H~~~H~  272 (440)
                      +|.|..|++.|.....|..|+++|+
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            3444444444444444444444443

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.87  E-value=1.1e-05  Score=55.53  Aligned_cols=31  Identities=26%  Similarity=0.464  Sum_probs=18.1

Q ss_pred             CCCCccccCccccccCChHHHHHHHHHhcCC
Q psy12560        244 FPLKRFQCKLCDKIFFTLHNMRRHMRIHKDR  274 (440)
Q Consensus       244 ~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~  274 (440)
                      .+++||.|.+|++.|.....|..|+++|+++
T Consensus         9 ~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~   39 (66)
T 2epp_A            9 REAGILPCGLCGKVFTDANRLRQHEAQHGVT   39 (66)
T ss_dssp             CCCCCCCCTTTCCCCSCHHHHHHHHHHHTTT
T ss_pred             CCccCcCCCCCCCccCCHHHHHhhhhhhCCC
Confidence            4455566666666666666666666666554

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.87  E-value=5.9e-06  Score=45.49  Aligned_cols=22  Identities=36%  Similarity=0.931  Sum_probs=8.3

Q ss_pred             ccCccccccCChHHHHHHHHHh
Q psy12560        250 QCKLCDKIFFTLHNMRRHMRIH  271 (440)
Q Consensus       250 ~C~~C~~~f~~~~~L~~H~~~H  271 (440)
                      .|.+|++.|.....|..|+++|
T Consensus         3 ~C~~C~k~f~~~~~l~~H~~~h   24 (27)
T 1znf_A            3 KCGLCERSFVEKSALSRHQRVH   24 (27)
T ss_dssp             BCSSSCCBCSSHHHHHHHGGGT
T ss_pred             cCCCCCCcCCCHHHHHHHHHHc
Confidence            3333333333333333333333

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.87  E-value=4.9e-06  Score=46.71  Aligned_cols=27  Identities=41%  Similarity=0.642  Sum_probs=17.9

Q ss_pred             ccccCccCcccCChHHHHHHHHHhCCC
Q psy12560        220 IFVCENCGKSFKRKYDLALHIRTHFPL  246 (440)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h~~~  246 (440)
                      ||.|+.|++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            566666666666666666666666554

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.87  E-value=9.3e-06  Score=44.73  Aligned_cols=27  Identities=33%  Similarity=0.646  Sum_probs=25.1

Q ss_pred             CCccccCccccccCChHHHHHHHHHhc
Q psy12560        246 LKRFQCKLCDKIFFTLHNMRRHMRIHK  272 (440)
Q Consensus       246 ~~~~~C~~C~~~f~~~~~L~~H~~~H~  272 (440)
                      +++|.|..|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            478999999999999999999999884

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.85  E-value=7.4e-06  Score=45.22  Aligned_cols=27  Identities=33%  Similarity=0.594  Sum_probs=24.9

Q ss_pred             CCccccCccccccCChHHHHHHHHHhc
Q psy12560        246 LKRFQCKLCDKIFFTLHNMRRHMRIHK  272 (440)
Q Consensus       246 ~~~~~C~~C~~~f~~~~~L~~H~~~H~  272 (440)
                      ++||.|+.|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            478999999999999999999999874

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.83  E-value=8e-06  Score=45.72  Aligned_cols=29  Identities=34%  Similarity=0.603  Sum_probs=22.7

Q ss_pred             cccccCccCcccCChHHHHHHHHHhCCCC
Q psy12560        219 KIFVCENCGKSFKRKYDLALHIRTHFPLK  247 (440)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  247 (440)
                      ++|.|+.|++.|.....|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            36788888888888888888888887653

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.83  E-value=1.1e-05  Score=44.84  Aligned_cols=28  Identities=32%  Similarity=0.803  Sum_probs=25.8

Q ss_pred             CCccccCccccccCChHHHHHHHHHhcC
Q psy12560        246 LKRFQCKLCDKIFFTLHNMRRHMRIHKD  273 (440)
Q Consensus       246 ~~~~~C~~C~~~f~~~~~L~~H~~~H~~  273 (440)
                      +++|.|.+|++.|.....|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            4789999999999999999999999864

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.82  E-value=9.1e-06  Score=45.43  Aligned_cols=28  Identities=29%  Similarity=0.574  Sum_probs=21.7

Q ss_pred             cccccCccCcccCChHHHHHHHHHhCCC
Q psy12560        219 KIFVCENCGKSFKRKYDLALHIRTHFPL  246 (440)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  246 (440)
                      +||.|+.|++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            3677888888888888888888877665

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.81  E-value=1.2e-05  Score=46.35  Aligned_cols=28  Identities=32%  Similarity=0.689  Sum_probs=19.9

Q ss_pred             cccccC--ccCcccCChHHHHHHHHHhCCC
Q psy12560        219 KIFVCE--NCGKSFKRKYDLALHIRTHFPL  246 (440)
Q Consensus       219 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~  246 (440)
                      +||.|+  .|++.|.....|..|+++|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            567776  6777777777777777777664

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.80  E-value=1.2e-05  Score=46.04  Aligned_cols=28  Identities=43%  Similarity=0.758  Sum_probs=20.4

Q ss_pred             cccccC--ccCcccCChHHHHHHHHHhCCC
Q psy12560        219 KIFVCE--NCGKSFKRKYDLALHIRTHFPL  246 (440)
Q Consensus       219 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~  246 (440)
                      +||.|+  .|++.|.....|..|+++|+++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            367776  7777777777777777777665

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.98  E-value=3.2e-06  Score=47.57  Aligned_cols=27  Identities=33%  Similarity=0.580  Sum_probs=17.5

Q ss_pred             ccccCccCcccCChHHHHHHHHHhCCC
Q psy12560        220 IFVCENCGKSFKRKYDLALHIRTHFPL  246 (440)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h~~~  246 (440)
                      ||.|+.|++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            566666666666666666666666554

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.76  E-value=1.2e-05  Score=44.22  Aligned_cols=26  Identities=35%  Similarity=0.586  Sum_probs=17.3

Q ss_pred             ccccCccCcccCChHHHHHHHHHhCC
Q psy12560        220 IFVCENCGKSFKRKYDLALHIRTHFP  245 (440)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h~~  245 (440)
                      ||.|+.|++.|.....|..|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            46677777777777777777766654

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.75  E-value=1e-05  Score=45.74  Aligned_cols=19  Identities=32%  Similarity=0.803  Sum_probs=7.6

Q ss_pred             cccCccccccCChHHHHHH
Q psy12560        249 FQCKLCDKIFFTLHNMRRH  267 (440)
Q Consensus       249 ~~C~~C~~~f~~~~~L~~H  267 (440)
                      |.|..|++.|.....|..|
T Consensus         3 ~~C~~C~k~f~~~~~l~~H   21 (30)
T 1paa_A            3 YACGLCNRAFTRRDLLIRH   21 (30)
T ss_dssp             SBCTTTCCBCSSSHHHHHH
T ss_pred             cCCcccCcccCChHHHHHH
Confidence            3344444444444444444

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.94  E-value=3.9e-06  Score=47.54  Aligned_cols=28  Identities=32%  Similarity=0.573  Sum_probs=18.0

Q ss_pred             cccccCccCcccCChHHHHHHHHHhCCC
Q psy12560        219 KIFVCENCGKSFKRKYDLALHIRTHFPL  246 (440)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  246 (440)
                      ++|.|+.|++.|.....|..|+++|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            4566666666666666666666666554

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.91  E-value=4.4e-06  Score=45.63  Aligned_cols=21  Identities=29%  Similarity=0.854  Sum_probs=9.1

Q ss_pred             eecCcCccccCChHHHHHHHH
Q psy12560        277 FECHDCHKSFTRKDNLERHVK  297 (440)
Q Consensus       277 ~~C~~C~~~f~~~~~l~~H~~  297 (440)
                      |.|+.||+.|.+...|..|++
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~   23 (26)
T 2lvu_A            3 YVCERCGKRFVQSSQLANHIR   23 (26)
Confidence            444444444444444444443

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.67  E-value=7.9e-05  Score=50.89  Aligned_cols=47  Identities=21%  Similarity=0.498  Sum_probs=34.1

Q ss_pred             cccccCChHHHHHHH-HHhcCCC------ceecC--cCccccCChHHHHHHHHhhc
Q psy12560        254 CDKIFFTLHNMRRHM-RIHKDRP------LFECH--DCHKSFTRKDNLERHVKSIH  300 (440)
Q Consensus       254 C~~~f~~~~~L~~H~-~~H~~~~------~~~C~--~C~~~f~~~~~l~~H~~~~H  300 (440)
                      |++.|.+...|..|+ +.|.+.+      +|.|.  .|++.+.....|..|++..|
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            777777777777776 3565544      68886  78888888888888887655

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.61  E-value=2e-05  Score=44.43  Aligned_cols=27  Identities=26%  Similarity=0.511  Sum_probs=16.1

Q ss_pred             ccccCccCcccCChHHHHHH-HHHhCCC
Q psy12560        220 IFVCENCGKSFKRKYDLALH-IRTHFPL  246 (440)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H-~~~h~~~  246 (440)
                      +|.|+.|++.|.....|..| +++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCC
Confidence            45666666666666666666 4555543

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.73  E-value=9.7e-06  Score=44.19  Aligned_cols=24  Identities=29%  Similarity=0.703  Sum_probs=11.9

Q ss_pred             ccccCccccccCChHHHHHHHHHh
Q psy12560        248 RFQCKLCDKIFFTLHNMRRHMRIH  271 (440)
Q Consensus       248 ~~~C~~C~~~f~~~~~L~~H~~~H  271 (440)
                      ||.|++|++.|.....|..|+++|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            444555555555555555554444

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.54  E-value=3.8e-05  Score=42.79  Aligned_cols=17  Identities=41%  Similarity=0.876  Sum_probs=7.3

Q ss_pred             cCccccCChHHHHHHHH
Q psy12560        281 DCHKSFTRKDNLERHVK  297 (440)
Q Consensus       281 ~C~~~f~~~~~l~~H~~  297 (440)
                      .|++.|...+.|..|++
T Consensus         9 ~C~k~f~~~~~l~~H~~   25 (29)
T 2ab3_A            9 NCGRSFNDRRKLNRHKK   25 (29)
T ss_dssp             TTCEEESSHHHHHHHHG
T ss_pred             cCcCccCCHHHHHHHHH
Confidence            44444444444444443

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.31  E-value=0.00012  Score=40.56  Aligned_cols=24  Identities=54%  Similarity=1.077  Sum_probs=12.3

Q ss_pred             CeecC--ccccccCChHHHHHHHHHh
Q psy12560        135 PYECS--NCHKGFKNKGKLNRHMKIH  158 (440)
Q Consensus       135 ~~~C~--~C~~~f~~~~~L~~H~~~h  158 (440)
                      +|.|.  .|++.|.....|..|+++|
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H   27 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIH   27 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHh
Confidence            34555  5555555555555555444

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.22  E-value=0.00061  Score=46.41  Aligned_cols=47  Identities=21%  Similarity=0.406  Sum_probs=34.1

Q ss_pred             ccCcccCChHHHHHHHH-HhCCCC------ccccC--ccccccCChHHHHHHHHHh
Q psy12560        225 NCGKSFKRKYDLALHIR-THFPLK------RFQCK--LCDKIFFTLHNMRRHMRIH  271 (440)
Q Consensus       225 ~C~~~f~~~~~l~~H~~-~h~~~~------~~~C~--~C~~~f~~~~~L~~H~~~H  271 (440)
                      .|++.|.+...|..|+. .|.+.+      +|.|.  .|++.+.....|..|++..
T Consensus         8 ~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            8 ECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            47777777777877773 565554      67785  6888777777888887764

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=97.04  E-value=0.00061  Score=56.83  Aligned_cols=55  Identities=18%  Similarity=0.432  Sum_probs=27.0

Q ss_pred             ccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHhcCCCc
Q psy12560        220 IFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPL  276 (440)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~  276 (440)
                      +..|+.|+..+ ....|..|....-..+...|+.|+..+.. ..|..|..++.|+.+
T Consensus       110 ~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~~~~~~~  164 (170)
T 3hcs_A          110 LMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQNCPLALE  164 (170)
T ss_dssp             EEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHTTCCC---
T ss_pred             eeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHHhCcChhh
Confidence            34555555554 34445555554445555555555555433 345555555555443

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.63  E-value=0.0011  Score=55.35  Aligned_cols=142  Identities=16%  Similarity=0.306  Sum_probs=88.0

Q ss_pred             ceeecccchhhccChHHHHHhHhhcCCCCceeccccccccCChHHHHHHHHHcCCCCCeecCccccccCChH-----HHH
Q psy12560         78 VMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKG-----KLN  152 (440)
Q Consensus        78 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~-----~L~  152 (440)
                      ..|.|++|...|..               ++.+ .||-.|-.. -+...+...    ...|+.|...+....     .+.
T Consensus        17 ~~~~C~IC~~~~~~---------------pv~~-~CgH~fC~~-Ci~~~~~~~----~~~CP~Cr~~~~~~~~~~~~~~~   75 (170)
T 3hcs_A           17 SKYECPICLMALRE---------------AVQT-PCGHRFCKA-CIIKSIRDA----GHKCPVDNEILLENQLFPDNFAK   75 (170)
T ss_dssp             GGGBCTTTCSBCSS---------------EEEC-TTSCEEEHH-HHHHHHHHH----CSBCTTTCCBCCGGGCEECHHHH
T ss_pred             CCCCCCCCChhhcC---------------cEEC-CCCCHHHHH-HHHHHHHhC----CCCCCCCccCcchhhhhhhHHHH
Confidence            56899999887764               3343 466666433 244433321    137888887765431     111


Q ss_pred             HHHHHhcCCCCcccc--cccccccCCHHHHHHHHHHhcCCCcccCCCCCccccCchhhhhccccccCccccccCccCccc
Q psy12560        153 RHMKIHSDSKEQWFC--KVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSF  230 (440)
Q Consensus       153 ~H~~~h~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f  230 (440)
                      +-+.     .....|  ..|+..+. ...+..|+. .-...+..|+.|+..+ ....|..|....-..+...|+.|+..+
T Consensus        76 ~~i~-----~l~v~C~n~GC~~~~~-~~~l~~H~~-~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~  147 (170)
T 3hcs_A           76 REIL-----SLMVKCPNEGCLHKME-LRHLEDHQA-HCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASM  147 (170)
T ss_dssp             HHHH-----TSEEECCSTTCCCEEE-GGGHHHHHT-TCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEE
T ss_pred             HHHh-----hcccCCCCCCCCceec-HhHHHHHHh-cCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCcc
Confidence            1111     122567  45766544 456777863 3345677899998877 567788888777777788899998877


Q ss_pred             CChHHHHHHHHHhCCCCcc
Q psy12560        231 KRKYDLALHIRTHFPLKRF  249 (440)
Q Consensus       231 ~~~~~l~~H~~~h~~~~~~  249 (440)
                      . ...|..|..++.|+.++
T Consensus       148 ~-~~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          148 A-FEDKEIHDQNCPLALEH  165 (170)
T ss_dssp             E-GGGHHHHHTTCCC----
T ss_pred             C-HHHHHhHHHhCcChhhh
Confidence            4 46778898887776543

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.19  E-value=0.005  Score=48.30  Aligned_cols=76  Identities=17%  Similarity=0.181  Sum_probs=51.8

Q ss_pred             cccccCccCcccCChHHHHHHH--HHhCCC-CccccCcc------ccccCChHHHHHHHHHhcCCCceecCcCccccCCh
Q psy12560        219 KIFVCENCGKSFKRKYDLALHI--RTHFPL-KRFQCKLC------DKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRK  289 (440)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~--~~h~~~-~~~~C~~C------~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~  289 (440)
                      +++.|.+|+..|.+...+..|.  +.|... +.|.+..+      ++.+....    +...+.+...|.|.+|++.|.+.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~C~~~f~s~  106 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPVCNMTFSSP  106 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETTTTEECSSH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCCCCCEeCCH
Confidence            5689999999999999999998  455322 33333111      12222111    12234566789999999999999


Q ss_pred             HHHHHHHHh
Q psy12560        290 DNLERHVKS  298 (440)
Q Consensus       290 ~~l~~H~~~  298 (440)
                      ..|..|+..
T Consensus       107 ~~~~~H~~g  115 (127)
T 1zu1_A          107 VVAESHYIG  115 (127)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHHCC
Confidence            999999863

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.98  E-value=0.0068  Score=47.55  Aligned_cols=20  Identities=35%  Similarity=0.542  Sum_probs=10.0

Q ss_pred             ccccccccccCCHHHHHHHH
Q psy12560        165 WFCKVCNKALMSVESLKKHM  184 (440)
Q Consensus       165 ~~C~~C~~~f~~~~~l~~H~  184 (440)
                      +.|.+|+..|.+...+..|.
T Consensus        33 ~~C~~C~v~~~S~s~~~~H~   52 (127)
T 1zu1_A           33 TQCKVCSAVLISESQKLAHY   52 (127)
T ss_dssp             SEETTTTEECCSHHHHHHHH
T ss_pred             CcCcCCCCEeCCHHHHHHHH
Confidence            44555555555555555554

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.95  E-value=0.0017  Score=50.07  Aligned_cols=31  Identities=26%  Similarity=0.424  Sum_probs=24.0

Q ss_pred             HHhcCCCceecCcCccccCChHHHHHHHHhh
Q psy12560        269 RIHKDRPLFECHDCHKSFTRKDNLERHVKSI  299 (440)
Q Consensus       269 ~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~  299 (440)
                      ..|+|+++|.|..|++.|.+...|..|+++.
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            3467778888888888888888888887653

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.09  E-value=0.0039  Score=48.03  Aligned_cols=29  Identities=21%  Similarity=0.380  Sum_probs=23.0

Q ss_pred             HhCCCCccccCccccccCChHHHHHHHHH
Q psy12560        242 THFPLKRFQCKLCDKIFFTLHNMRRHMRI  270 (440)
Q Consensus       242 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~  270 (440)
                      .|+|+++|.|..|++.|.+...|..|+++
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            46677888888888888888888888765

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.65  E-value=0.021  Score=34.97  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=18.3

Q ss_pred             CceecCcCccccCChHHHHHHHH
Q psy12560        275 PLFECHDCHKSFTRKDNLERHVK  297 (440)
Q Consensus       275 ~~~~C~~C~~~f~~~~~l~~H~~  297 (440)
                      .+|.|+.|+..|.....|+.||+
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            45778888888888888888887

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.29  E-value=0.049  Score=33.41  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=11.3

Q ss_pred             CeecCccccccCChHHHHHHHH
Q psy12560        135 PYECSNCHKGFKNKGKLNRHMK  156 (440)
Q Consensus       135 ~~~C~~C~~~f~~~~~L~~H~~  156 (440)
                      +|.|+.|+..|.....|+.||+
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhhh
Confidence            3455555555555555555554

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=93.59  E-value=0.058  Score=30.92  Aligned_cols=26  Identities=35%  Similarity=0.613  Sum_probs=23.2

Q ss_pred             ceecCcCccccCChHHHHHHHHhhcC
Q psy12560        276 LFECHDCHKSFTRKDNLERHVKSIHL  301 (440)
Q Consensus       276 ~~~C~~C~~~f~~~~~l~~H~~~~H~  301 (440)
                      .|.|++|.+.|.+...|..|..+.|.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccc
Confidence            38899999999999999999998886

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=89.38  E-value=0.37  Score=27.54  Aligned_cols=22  Identities=23%  Similarity=0.626  Sum_probs=11.3

Q ss_pred             eecCccccccCChHHHHHHHHH
Q psy12560        136 YECSNCHKGFKNKGKLNRHMKI  157 (440)
Q Consensus       136 ~~C~~C~~~f~~~~~L~~H~~~  157 (440)
                      |.|++|.+.|.+...|..|...
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~   27 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEA   27 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHH
T ss_pred             cCCcHHHHHcCCHHHHHHHHHh
Confidence            4555555555555555555443

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=86.61  E-value=0.49  Score=26.08  Aligned_cols=25  Identities=28%  Similarity=0.630  Sum_probs=20.9

Q ss_pred             eecCcCccccCChHHHHHHHHhhcC
Q psy12560        277 FECHDCHKSFTRKDNLERHVKSIHL  301 (440)
Q Consensus       277 ~~C~~C~~~f~~~~~l~~H~~~~H~  301 (440)
                      -.|..|.+.|..-.+|.+|++..|.
T Consensus        10 qhcrfckkkysdvknlikhire~hd   34 (37)
T 2elu_A           10 QHCRFCKKKYSDVKNLIKHIRDAHD   34 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3588999999999999999987663

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=85.07  E-value=0.82  Score=26.24  Aligned_cols=24  Identities=21%  Similarity=0.254  Sum_probs=17.6

Q ss_pred             CCceecCcCccccCChHHHHHHHH
Q psy12560        274 RPLFECHDCHKSFTRKDNLERHVK  297 (440)
Q Consensus       274 ~~~~~C~~C~~~f~~~~~l~~H~~  297 (440)
                      ...+.|..|+.+|.+...+..|.+
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHHH
T ss_pred             cCcCeeccccceehhhHHHhhhhe
Confidence            345677778888887777777765

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=82.09  E-value=0.89  Score=31.47  Aligned_cols=41  Identities=29%  Similarity=0.508  Sum_probs=25.2

Q ss_pred             ceeecccchhhccChHHHHHhHhhcCCCCceeccccccccCC
Q psy12560         78 VMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVN  119 (440)
Q Consensus        78 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~  119 (440)
                      ..|.|..||.++. +..|..|...-.+-..|.|--|++.|..
T Consensus         9 V~F~C~~Cgd~lK-K~kv~~H~~~Cr~~~~~SCIDC~~~F~~   49 (79)
T 1wjv_A            9 VFFTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFWG   49 (79)
T ss_dssp             CEEEESSSCCEEE-TTHHHHHHHHCTTCCEEEETTTTEEEEG
T ss_pred             eEEEcCCCCCeee-cccchhHHhhCCCCCcEEecccCCeeCC
Confidence            3566777776665 4446666655554456667777776654

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=81.68  E-value=0.78  Score=31.77  Aligned_cols=46  Identities=17%  Similarity=0.476  Sum_probs=37.0

Q ss_pred             ceeccccccccCChHHHHHHHHHcCCCCCeecCccccccCChHHHHHH
Q psy12560        107 KLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRH  154 (440)
Q Consensus       107 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H  154 (440)
                      -|.|..|+..+.-.. |..|...-.+...|.|-.|++.|.. ...+.|
T Consensus        10 ~F~C~~Cgd~lKK~k-v~~H~~~Cr~~~~~SCIDC~~~F~~-~~y~~H   55 (79)
T 1wjv_A           10 FFTCNACGESVKKIQ-VEKHVSNCRNCECLSCIDCGKDFWG-DDYKSH   55 (79)
T ss_dssp             EEEESSSCCEEETTH-HHHHHHHCTTCCEEEETTTTEEEEG-GGTTTC
T ss_pred             EEEcCCCCCeeeccc-chhHHhhCCCCCcEEecccCCeeCC-CCEeCE
Confidence            489999999887765 9999887776667999999999985 445555

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=80.51  E-value=2.3  Score=26.85  Aligned_cols=44  Identities=23%  Similarity=0.484  Sum_probs=19.6

Q ss_pred             eccccccccCChHHHHHHHHHcCCCCCeecCccc-cccCChHHHHHHH
Q psy12560        109 SCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCH-KGFKNKGKLNRHM  155 (440)
Q Consensus       109 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~-~~f~~~~~L~~H~  155 (440)
                      .|.+|.....+...|..|...-...   +|++|- ....+.+.|+.|.
T Consensus         5 vC~~C~~ECET~kEl~~H~~sCp~g---qCPYC~~~~e~tesAlQaHf   49 (57)
T 2k9h_A            5 VCDVCHHECETAKELESHRQSCING---QCPYCMTITEATESALQAHY   49 (57)
T ss_dssp             BCTTTCCBCSSTTTHHHHHHHHTTT---BCTTTCCBCCSSHHHHHHHH
T ss_pred             hhhHHHhhhhhHHHHHHHhccCCCC---CCCcccCcCCcCHHHHHHHH
Confidence            3445544444445555554443221   344442 2334444455443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	440
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	1e-08
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	3e-08
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	2e-07
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	2e-06
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	5e-06
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	2e-05
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	1e-04
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	3e-06
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	5e-05
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	8e-05
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	3e-04
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.002
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	7e-06
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	8e-06
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	1e-04
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	3e-04
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	0.001
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	1e-05
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	6e-05
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	6e-05
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	0.003
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	2e-05
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	2e-05
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	2e-04
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	2e-04
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	2e-04
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	2e-05
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	3e-04
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.001
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	1e-04
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	0.001
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	0.003
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	1e-04
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	1e-04
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	4e-04
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	2e-04
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	7e-04
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.001
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.004
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	2e-04
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	5e-04
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	0.003
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	0.004
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	5e-04
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	0.004
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	6e-04
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	0.002
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	0.004
d1x6ea2	26	g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (	0.001
d2epra1	35	g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [	0.002

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (115), Expect = 1e-08
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 219 KIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
           K++ C+ CGKSF  K     H+  H  L+ + C +C K F   H++  HM+IH
Sbjct: 2   KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (113), Expect = 3e-08
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
           K Y C  C KSF  K+   +H   H   + + C  CGK FK K+ L  H++ H
Sbjct: 2   KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (107), Expect = 2e-07
 Identities = 23/46 (50%), Positives = 25/46 (54%)

Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
           C K+F +KS  D H   H  L PY C  C K FK K  L  HMKIH
Sbjct: 8   CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 2e-06
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 247 KRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVK 297
           K + C+ C K F       RHM +H     + C  C K F  K +L  H+K
Sbjct: 2   KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 5e-06
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIH 187
            Y C  C K F +K + +RHM +H      + C VC K       L  HMKIH
Sbjct: 3   LYPC-QCGKSFTHKSQRDRHMSMHLG-LRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 2e-05
 Identities = 16/46 (34%), Positives = 23/46 (50%)

Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTH 215
           C K+        +HM +H GL+ Y C +C K F  K+ L+ H   H
Sbjct: 8   CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (87), Expect = 1e-04
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 80  YKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSH 130
           Y C +C + F  K     H+          C +C K F  K HL  H   H
Sbjct: 4   YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (98), Expect = 3e-06
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 185 KIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
           + H G K Y C  C+K+F +K  L  H   + D  
Sbjct: 1   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (89), Expect = 5e-05
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
           PY CS+C K F+ K  L+ H K + D  
Sbjct: 8   PYACSHCDKTFRQKQLLDMHFKRYHDPN 35

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (87), Expect = 8e-05
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 214 THSDKKIFVCENCGKSFKRKYDLALHIRTH 243
           TH+ +K + C +C K+F++K  L +H + +
Sbjct: 2   THTGEKPYACSHCDKTFRQKQLLDMHFKRY 31

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (84), Expect = 3e-04
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 241 RTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKD 273
           RTH   K + C  CDK F     +  H + + D
Sbjct: 1   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 33

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.002
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 269 RIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLED 303
           R H     + C  C K+F +K  L+ H K  H  +
Sbjct: 1   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (95), Expect = 7e-06
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
           + +    +++ + C+ CGKSF    DL+ H RTH
Sbjct: 2   RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (94), Expect = 8e-06
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHS 216
           +        + Y CD C KSF   +DL KH+ TH+
Sbjct: 2   RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT 36

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (86), Expect = 1e-04
 Identities = 8/34 (23%), Positives = 17/34 (50%)

Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHS 159
            +   ++   Y+C  C K F +   L++H + H+
Sbjct: 3   SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT 36

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (83), Expect = 3e-04
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
           R     ++R  ++C +C KSF+   +L +H +  H
Sbjct: 2   RSEWQQRERRRYKCDECGKSFSHSSDLSKHRR-TH 35

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (79), Expect = 0.001
 Identities = 8/35 (22%), Positives = 14/35 (40%)

Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
                     +R++C  C K F    ++ +H R H
Sbjct: 1   GRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (93), Expect = 1e-05
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 186 IHAGLKNYHCDICEKSFIEKNDLIKHQVTHS 216
           IH+G K Y C  C K+F   + L++HQ  H+
Sbjct: 1   IHSGEKPYGCVECGKAFSRSSILVQHQRVHT 31

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (89), Expect = 6e-05
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 215 HSDKKIFVCENCGKSFKRKYDLALHIRTH 243
           HS +K + C  CGK+F R   L  H R H
Sbjct: 2   HSGEKPYGCVECGKAFSRSSILVQHQRVH 30

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (88), Expect = 6e-05
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 135 PYECSNCHKGFKNKGKLNRHMKIHS 159
           PY C  C K F     L +H ++H+
Sbjct: 7   PYGCVECGKAFSRSSILVQHQRVHT 31

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (76), Expect = 0.003
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 247 KRFQCKLCDKIFFTLHNMRRHMRIH 271
           K + C  C K F     + +H R+H
Sbjct: 6   KPYGCVECGKAFSRSSILVQHQRVH 30

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTH 215
             +   G+K + C  C++SF   + L  H+  H
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
                +  K F C +C +SF R   LALH + H
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
             R    +K FQC  CD+ F    ++  H + H
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHL 301
             R       F+C DC +SF+R D+L  H K  H+
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRK-RHM 35

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 8/33 (24%), Positives = 13/33 (39%)

Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
                  + P++C +C + F     L  H K H
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (92), Expect = 2e-05
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 269 RIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLED 303
           R H     +EC+ CH  FT+   ++ H+   H E+
Sbjct: 1   RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (83), Expect = 3e-04
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 185 KIHAGLKNYHCDICEKSFIEKNDLIKHQVTH 215
           + H+G K Y C IC   F +   +  H +  
Sbjct: 1   RTHSGEKPYECYICHARFTQSGTMKMHILQK 31

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (78), Expect = 0.001
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 214 THSDKKIFVCENCGKSFKRKYDLALHIRTH 243
           THS +K + C  C   F +   + +HI   
Sbjct: 2   THSGEKPYECYICHARFTQSGTMKMHILQK 31

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (86), Expect = 1e-04
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 135 PYECSNCHKGFKNKGKLNRHMKIHS 159
           P++C  C + F     L  H++ H+
Sbjct: 3   PFQCRICMRNFSRSDHLTTHIRTHT 27

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.1 bits (79), Expect = 0.001
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 219 KIFVCENCGKSFKRKYDLALHIRTH 243
           K F C  C ++F R   L  HIRTH
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTH 26

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.0 bits (76), Expect = 0.003
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHS 216
           K + C IC ++F   + L  H  TH+
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHT 27

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (86), Expect = 1e-04
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 187 HAGLKNYHCDICEKSFIEKNDLIKHQVTHSD 217
            +G + + C IC  +F  K +  +H   H+D
Sbjct: 2   SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.7 bits (85), Expect = 1e-04
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDS 161
           P+ C  C   F  K    RH+K+H+D+
Sbjct: 7   PFVCRICLSAFTTKANCARHLKVHTDT 33

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.5 bits (82), Expect = 4e-04
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 215 HSDKKIFVCENCGKSFKRKYDLALHIRTH 243
            S K+ FVC  C  +F  K + A H++ H
Sbjct: 2   SSGKRPFVCRICLSAFTTKANCARHLKVH 30

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (85), Expect = 2e-04
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 216 SDKKIFVCENCGKSFKRKYDLALHIR-THFPLKRFQCKL 253
           S  K ++C++CGK F R   L  HI+  H   +  +C++
Sbjct: 1   SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (81), Expect = 7e-04
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 277 FECHDCHKSFTRKDNLERHVKSIH 300
           + C  C K F+R D+L  H+K +H
Sbjct: 6   YICQSCGKGFSRPDHLNGHIKQVH 29

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (80), Expect = 0.001
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 191 KNYHCDICEKSFIEKNDLIKH-QVTHSDKKIFVCE 224
           K Y C  C K F   + L  H +  H+ ++   C+
Sbjct: 4   KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.004
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 135 PYECSNCHKGFKNKGKLNRHMK-IHSDSK 162
           PY C +C KGF     LN H+K +H+  +
Sbjct: 5   PYICQSCGKGFSRPDHLNGHIKQVHTSER 33

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 36.1 bits (84), Expect = 2e-04
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
            + C  C + F  +  L RH + H++ K
Sbjct: 2   SFVCEVCTRAFARQEHLKRHYRSHTNEK 29

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 35.3 bits (82), Expect = 5e-04
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 219 KIFVCENCGKSFKRKYDLALHIRTH 243
           + FVCE C ++F R+  L  H R+H
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSH 25

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 33.0 bits (76), Expect = 0.003
 Identities = 7/29 (24%), Positives = 20/29 (68%)

Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
           +++ C++C ++F  +  L +H  +H+++K
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 32.6 bits (75), Expect = 0.004
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 247 KRFQCKLCDKIFFTLHNMRRHMRIH 271
           + F C++C + F    +++RH R H
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSH 25

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 5e-04
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 221 FVCE--NCGKSFKRKYDLALHIRTHFPLKRFQCK 252
           F C    CGKSF  K  L  H++ H   + + C+
Sbjct: 2   FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (75), Expect = 0.004
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 192 NYHCD--ICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
           ++ C    C KSF  K  L +H   HSD + ++CE
Sbjct: 1   SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (81), Expect = 6e-04
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
            + C  C K F     L++H+K H + K
Sbjct: 2   KFACPECPKRFMRSDHLSKHIKTHQNKK 29

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (77), Expect = 0.002
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 219 KIFVCENCGKSFKRKYDLALHIRTH 243
           K F C  C K F R   L+ HI+TH
Sbjct: 1   KKFACPECPKRFMRSDHLSKHIKTH 25

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.004
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
           K + C  C K F+  + L KH  TH +KK
Sbjct: 1   KKFACPECPKRFMRSDHLSKHIKTHQNKK 29

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (79), Expect = 0.001
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 135 PYECSNCHKGFKNKGKLNRHMKIHS 159
           PY+C  C K F     L  H +IH+
Sbjct: 2   PYKCLECGKAFSQNSGLINHQRIHT 26

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (76), Expect = 0.002
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 105 KAKLSCDICDKTFVNKSHLDYHKLSHQDLNPY 136
           + +++C+IC K F +  HL+ HKLSH    PY
Sbjct: 3   RKQVACEICGKIFRDVYHLNRHKLSHSGEKPY 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	440
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.57
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.57
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.16
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.09
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.09
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.08
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.07
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.04
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.02
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.0
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.97
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.96
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.93
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.91
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.89
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.87
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.85
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.83
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.82
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.82
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.81
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.76
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.75
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.72
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.72
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.68
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.66
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.61
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.57
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.52
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.49
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.47
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.42
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.33
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.32
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.32
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.19
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.17
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.13
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.12
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.05
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.98
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.96
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.96
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.94
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.86
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.82
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.81
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.81
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.78
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.62
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.58
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.57
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.49
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.41
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.4
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.4
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.38
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.36
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.34
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.3
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.27
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.23
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.2
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.19
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.13
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.05
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.03
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.9
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.81
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.78
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.78
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.75
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.65
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.65
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.61
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.57
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.56
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.43
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.18
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.17
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.17
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.03
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.94
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.94
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.87
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.76
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.59
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.54
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.53
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.52
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.23
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.79
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	94.66
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	94.51
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	93.64
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	93.51
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	93.44
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	92.62
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	92.46
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	92.45
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.31
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	91.06
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	90.51
d1y0jb1	36	U-shaped transcription factor, different fingers {	90.23
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	90.13
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	89.74
d1y0jb1	36	U-shaped transcription factor, different fingers {	89.29
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	88.68
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	87.75
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	87.69
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	87.06
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	86.56
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	85.52
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	83.88
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	83.39
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	82.31
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	81.09
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	80.83
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	80.82
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	80.48
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	80.08

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7.6e-16  Score=100.90  Aligned_cols=51  Identities=33%  Similarity=0.600  Sum_probs=37.8

Q ss_pred             CCccccCccccccCChHHHHHHHHHhcCCCceecCcCccccCChHHHHHHHH
Q psy12560        246 LKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVK  297 (440)
Q Consensus       246 ~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~  297 (440)
                      |++|+|. ||+.|.....|..|+++|+|++||.|.+||++|.+.+.|..|++
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r   51 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK   51 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHh
Confidence            4677773 77777777777777777777777777777777777777777776

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=8.1e-16  Score=100.76  Aligned_cols=53  Identities=38%  Similarity=0.827  Sum_probs=48.6

Q ss_pred             ccccccCccCcccCChHHHHHHHHHhCCCCccccCccccccCChHHHHHHHHHh
Q psy12560        218 KKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH  271 (440)
Q Consensus       218 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H  271 (440)
                      |+||.|+ ||+.|.....|..|+++|++++||.|.+||+.|.....|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            5789995 9999999999999999999999999999999999999999999887

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=8.1e-12  Score=73.90  Aligned_cols=35  Identities=23%  Similarity=0.568  Sum_probs=23.0

Q ss_pred             CCccccCccccccCChHHHHHHHH-HhcCCCceecC
Q psy12560        246 LKRFQCKLCDKIFFTLHNMRRHMR-IHKDRPLFECH  280 (440)
Q Consensus       246 ~~~~~C~~C~~~f~~~~~L~~H~~-~H~~~~~~~C~  280 (440)
                      ++||+|.+||+.|.....|.+|++ +|++++||+|.
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            466666666666666666666654 46666666665

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=4.8e-12  Score=75.14  Aligned_cols=37  Identities=32%  Similarity=0.668  Sum_probs=20.3

Q ss_pred             hccccccCccccccCccCcccCChHHHHHHHHHhCCC
Q psy12560        210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPL  246 (440)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  246 (440)
                      +|+++|++++||.|+.||++|...+.|..|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            3555555555555555555555555555555555543

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.2e-11  Score=72.19  Aligned_cols=37  Identities=22%  Similarity=0.442  Sum_probs=32.5

Q ss_pred             HHHHHhCCCCccccCccccccCChHHHHHHHHHhcCC
Q psy12560        238 LHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDR  274 (440)
Q Consensus       238 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~  274 (440)
                      +|+++|++++||.|++||++|...+.|..|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            3677889999999999999999999999999999886

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.4e-11  Score=68.89  Aligned_cols=32  Identities=28%  Similarity=0.488  Sum_probs=17.5

Q ss_pred             hCCCCccccCccccccCChHHHHHHHHHhcCC
Q psy12560        243 HFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDR  274 (440)
Q Consensus       243 h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~  274 (440)
                      |++++||+|.+|+++|...+.|..|+++|+||
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            45555555555555555555555555555543

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.5e-11  Score=71.13  Aligned_cols=37  Identities=32%  Similarity=0.728  Sum_probs=29.8

Q ss_pred             CccccccCccCcccCChHHHHHHHH-HhCCCCccccCc
Q psy12560        217 DKKIFVCENCGKSFKRKYDLALHIR-THFPLKRFQCKL  253 (440)
Q Consensus       217 ~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~  253 (440)
                      .++||.|++||+.|...+.|..|++ +|++++||+|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            3578888888888888888888875 688888888864

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=4.8e-11  Score=69.48  Aligned_cols=34  Identities=32%  Similarity=0.650  Sum_probs=27.7

Q ss_pred             HHhcCCCceecCcCccccCChHHHHHHHHhhcCC
Q psy12560        269 RIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLE  302 (440)
Q Consensus       269 ~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  302 (440)
                      |+|+|++||+|++|++.|.++++|.+|++.+|++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            4688888888888888888888888888777764

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=8.2e-11  Score=68.64  Aligned_cols=32  Identities=34%  Similarity=0.729  Sum_probs=20.0

Q ss_pred             HHhcCCCceecCcCccccCChHHHHHHHHhhc
Q psy12560        269 RIHKDRPLFECHDCHKSFTRKDNLERHVKSIH  300 (440)
Q Consensus       269 ~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~H  300 (440)
                      |+|+|++||+|.+||++|.+++.|..|++.++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccC
Confidence            35666666666666666666666666666443

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=7.1e-11  Score=68.92  Aligned_cols=33  Identities=30%  Similarity=0.490  Sum_probs=21.7

Q ss_pred             HhCCCCccccCccccccCChHHHHHHHHHhcCC
Q psy12560        242 THFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDR  274 (440)
Q Consensus       242 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~  274 (440)
                      +|+|++||+|.+|+++|...+.|..|+++|+++
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            566666666666666666666666666666554

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=5.3e-11  Score=70.01  Aligned_cols=29  Identities=41%  Similarity=0.732  Sum_probs=12.3

Q ss_pred             HHhcCCCceecCcCccccCChHHHHHHHH
Q psy12560        269 RIHKDRPLFECHDCHKSFTRKDNLERHVK  297 (440)
Q Consensus       269 ~~H~~~~~~~C~~C~~~f~~~~~l~~H~~  297 (440)
                      |+|+|++||+|+.|+++|.++++|.+|++
T Consensus         4 R~HTgeKPy~C~~C~k~F~~~~~L~~H~r   32 (37)
T d1p7aa_           4 RGSTGIKPFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             STTCCSSSBCCTTTCCCBSSHHHHHHHHG
T ss_pred             CccCCccCeEeCCCCCEecCHHHHHHHHh
Confidence            33444444444444444444444444433

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.4e-10  Score=65.72  Aligned_cols=33  Identities=39%  Similarity=0.618  Sum_probs=27.1

Q ss_pred             cccCccccccCccCcccCChHHHHHHHHHhCCC
Q psy12560        214 THSDKKIFVCENCGKSFKRKYDLALHIRTHFPL  246 (440)
Q Consensus       214 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  246 (440)
                      +|++++||.|..||++|...+.|..|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            477888888888888888888888888888775

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.93  E-value=2.3e-10  Score=65.72  Aligned_cols=26  Identities=38%  Similarity=0.694  Sum_probs=11.5

Q ss_pred             cCCCceecCcCccccCChHHHHHHHH
Q psy12560        272 KDRPLFECHDCHKSFTRKDNLERHVK  297 (440)
Q Consensus       272 ~~~~~~~C~~C~~~f~~~~~l~~H~~  297 (440)
                      +|++||+|.+|++.|.++++|.+|++
T Consensus         3 TGekPy~C~~C~k~F~~~~~L~~H~r   28 (35)
T d1srka_           3 SGKRPFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHG
T ss_pred             CCCccccCCCCCCcccChHHHHHHcc
Confidence            34444444444444444444444444

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=3.4e-10  Score=66.44  Aligned_cols=31  Identities=32%  Similarity=0.565  Sum_probs=15.2

Q ss_pred             HHhCCCCccccCccccccCChHHHHHHHHHh
Q psy12560        241 RTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH  271 (440)
Q Consensus       241 ~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H  271 (440)
                      ++|++++||+|.+|++.|..++.|..|+++|
T Consensus         4 R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             STTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CccCCccCeEeCCCCCEecCHHHHHHHHhcC
Confidence            4444444444444444444444444444444

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.89  E-value=3.8e-10  Score=61.94  Aligned_cols=27  Identities=30%  Similarity=0.806  Sum_probs=14.4

Q ss_pred             ccccCccccccCChHHHHHHHHHhcCC
Q psy12560        248 RFQCKLCDKIFFTLHNMRRHMRIHKDR  274 (440)
Q Consensus       248 ~~~C~~C~~~f~~~~~L~~H~~~H~~~  274 (440)
                      ||.|++|++.|...+.|.+|+++|+|+
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             cCCCCCCCCCCCCchHcccccCcccCC
Confidence            455555555555555555555555554

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=4e-10  Score=61.02  Aligned_cols=27  Identities=33%  Similarity=0.767  Sum_probs=14.1

Q ss_pred             CccccCccccccCChHHHHHHHHHhcC
Q psy12560        247 KRFQCKLCDKIFFTLHNMRRHMRIHKD  273 (440)
Q Consensus       247 ~~~~C~~C~~~f~~~~~L~~H~~~H~~  273 (440)
                      +||+|++|++.|...+.|.+|+++|+|
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             cCccCCCCcCEecccccccccCCCccC
Confidence            455555555555555555555555543

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=4.5e-10  Score=65.27  Aligned_cols=31  Identities=26%  Similarity=0.478  Sum_probs=18.2

Q ss_pred             HhCCCCccccCccccccCChHHHHHHHHHhc
Q psy12560        242 THFPLKRFQCKLCDKIFFTLHNMRRHMRIHK  272 (440)
Q Consensus       242 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~  272 (440)
                      +|+|++||+|++|++.|....+|..|++.++
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKH   32 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHccccc
Confidence            4556666666666666666666666654433

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=8.8e-10  Score=60.32  Aligned_cols=27  Identities=26%  Similarity=0.807  Sum_probs=14.7

Q ss_pred             ccccCccccccCChHHHHHHHHHhcCC
Q psy12560        248 RFQCKLCDKIFFTLHNMRRHMRIHKDR  274 (440)
Q Consensus       248 ~~~C~~C~~~f~~~~~L~~H~~~H~~~  274 (440)
                      ||.|++|++.|...+.|.+|+++|+|+
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CEECCcCCCeecchHHhhhhcCccCCc
Confidence            455555555555555555555555554

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=1.2e-09  Score=62.57  Aligned_cols=32  Identities=31%  Similarity=0.636  Sum_probs=30.5

Q ss_pred             hCCCCccccCccccccCChHHHHHHHHHhcCC
Q psy12560        243 HFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDR  274 (440)
Q Consensus       243 h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~  274 (440)
                      |+|++||+|.+|++.|....+|.+|+++|++.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            68999999999999999999999999999875

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=8.1e-10  Score=63.95  Aligned_cols=32  Identities=31%  Similarity=0.744  Sum_probs=22.5

Q ss_pred             cccCc--cccccCChHHHHHHHHHhcCCCceecC
Q psy12560        249 FQCKL--CDKIFFTLHNMRRHMRIHKDRPLFECH  280 (440)
Q Consensus       249 ~~C~~--C~~~f~~~~~L~~H~~~H~~~~~~~C~  280 (440)
                      |.|++  |++.|.+...|++|+++|+|++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            56655  777777777777777777777777765

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.81  E-value=1.3e-09  Score=59.81  Aligned_cols=29  Identities=41%  Similarity=0.748  Sum_probs=23.9

Q ss_pred             cccccCccCcccCChHHHHHHHHHhCCCC
Q psy12560        219 KIFVCENCGKSFKRKYDLALHIRTHFPLK  247 (440)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  247 (440)
                      +||.|++|+++|...+.|..|+++|+||+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            47888888888888888888888888875

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.76  E-value=1.2e-09  Score=67.59  Aligned_cols=41  Identities=34%  Similarity=0.592  Sum_probs=28.4

Q ss_pred             hhhhhccccccCccccccCc--cCcccCChHHHHHHHHHhCCCC
Q psy12560        206 NDLIKHQVTHSDKKIFVCEN--CGKSFKRKYDLALHIRTHFPLK  247 (440)
Q Consensus       206 ~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~  247 (440)
                      ..|..|+. |.+++||.|++  |++.|...+.|..|+++|+|++
T Consensus         5 ~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             chhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            34555664 77777777765  7777777777777777777764

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.2e-09  Score=58.67  Aligned_cols=29  Identities=45%  Similarity=0.722  Sum_probs=23.0

Q ss_pred             cccccCccCcccCChHHHHHHHHHhCCCC
Q psy12560        219 KIFVCENCGKSFKRKYDLALHIRTHFPLK  247 (440)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  247 (440)
                      +||.|++|+++|...+.|..|+++|++++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            47888888888888888888888888764

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=3.4e-09  Score=57.29  Aligned_cols=28  Identities=25%  Similarity=0.787  Sum_probs=18.8

Q ss_pred             CCCeecCccccccCChHHHHHHHHHhcC
Q psy12560        133 LNPYECSNCHKGFKNKGKLNRHMKIHSD  160 (440)
Q Consensus       133 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~  160 (440)
                      |+||+|++|++.|...+.|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            4667777777777777777777766653

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=2.7e-10  Score=70.60  Aligned_cols=39  Identities=28%  Similarity=0.589  Sum_probs=27.0

Q ss_pred             HHHHHHHhCCCCccccCc--cccccCChHHHHHHHHHhcCCC
Q psy12560        236 LALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIHKDRP  275 (440)
Q Consensus       236 l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~H~~~~  275 (440)
                      |..|+ .|++++||.|.+  |++.|...+.|..|+++|+|++
T Consensus         7 l~~h~-~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           7 IDKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSC-EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hcchh-hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            34455 367777777766  7777777777777777777764

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=3.6e-09  Score=61.15  Aligned_cols=33  Identities=36%  Similarity=0.805  Sum_probs=27.1

Q ss_pred             cccCc--cCcccCChHHHHHHHHHhCCCCccccCc
Q psy12560        221 FVCEN--CGKSFKRKYDLALHIRTHFPLKRFQCKL  253 (440)
Q Consensus       221 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (440)
                      |.|+.  |++.|.....|.+|+++|++++||+|+.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCCC
Confidence            67765  8888888888888888888888888863

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=4.3e-09  Score=55.31  Aligned_cols=24  Identities=33%  Similarity=0.668  Sum_probs=9.4

Q ss_pred             ccccCccccccCChHHHHHHHHHh
Q psy12560        248 RFQCKLCDKIFFTLHNMRRHMRIH  271 (440)
Q Consensus       248 ~~~C~~C~~~f~~~~~L~~H~~~H  271 (440)
                      ||+|.+||+.|...+.|.+|+++|
T Consensus         2 Py~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCccCC
Confidence            333333333333333333333333

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.2e-08  Score=56.09  Aligned_cols=26  Identities=31%  Similarity=0.772  Sum_probs=13.7

Q ss_pred             ccccCc--cccccCChHHHHHHHHHhcC
Q psy12560        248 RFQCKL--CDKIFFTLHNMRRHMRIHKD  273 (440)
Q Consensus       248 ~~~C~~--C~~~f~~~~~L~~H~~~H~~  273 (440)
                      ||.|++  |++.|...+.|++|+++|+|
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHTTT
T ss_pred             CeeCCCCCCCceECChhHhhhhcCcCcC
Confidence            455544  55555555555555555554

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.3e-08  Score=56.05  Aligned_cols=28  Identities=46%  Similarity=0.834  Sum_probs=15.2

Q ss_pred             CccccCc--cccccCChHHHHHHHHHhcCC
Q psy12560        247 KRFQCKL--CDKIFFTLHNMRRHMRIHKDR  274 (440)
Q Consensus       247 ~~~~C~~--C~~~f~~~~~L~~H~~~H~~~  274 (440)
                      +||.|++  |+++|...+.|.+|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            3555544  555555555555555555543

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.6e-08  Score=52.28  Aligned_cols=25  Identities=40%  Similarity=0.914  Sum_probs=16.3

Q ss_pred             CCeecCccccccCChHHHHHHHHHh
Q psy12560        134 NPYECSNCHKGFKNKGKLNRHMKIH  158 (440)
Q Consensus       134 ~~~~C~~C~~~f~~~~~L~~H~~~h  158 (440)
                      +||+|.+||+.|...+.|..|+++|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            4666666666666666666666665

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=4.4e-08  Score=53.71  Aligned_cols=28  Identities=36%  Similarity=0.560  Sum_probs=23.7

Q ss_pred             cccccCc--cCcccCChHHHHHHHHHhCCC
Q psy12560        219 KIFVCEN--CGKSFKRKYDLALHIRTHFPL  246 (440)
Q Consensus       219 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~  246 (440)
                      +||.|++  |+++|...+.|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5788877  888888888888888888875

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=3.8e-08  Score=54.61  Aligned_cols=28  Identities=32%  Similarity=0.713  Sum_probs=15.4

Q ss_pred             CccccC--ccccccCChHHHHHHHHHhcCC
Q psy12560        247 KRFQCK--LCDKIFFTLHNMRRHMRIHKDR  274 (440)
Q Consensus       247 ~~~~C~--~C~~~f~~~~~L~~H~~~H~~~  274 (440)
                      +||.|+  .|++.|...+.|.+|+++|+|+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            355553  3555555555555555555554

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=4.9e-08  Score=53.68  Aligned_cols=28  Identities=39%  Similarity=0.735  Sum_probs=23.1

Q ss_pred             cccccCc--cCcccCChHHHHHHHHHhCCC
Q psy12560        219 KIFVCEN--CGKSFKRKYDLALHIRTHFPL  246 (440)
Q Consensus       219 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~  246 (440)
                      +||.|++  |+++|...+.|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5788866  888888888888888888875

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.3e-07  Score=52.41  Aligned_cols=29  Identities=45%  Similarity=0.769  Sum_probs=21.7

Q ss_pred             cccccC--ccCcccCChHHHHHHHHHhCCCC
Q psy12560        219 KIFVCE--NCGKSFKRKYDLALHIRTHFPLK  247 (440)
Q Consensus       219 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~  247 (440)
                      +||.|+  .|++.|...+.|..|+++|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            467774  48888888888888888887764

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.32  E-value=1.6e-07  Score=52.28  Aligned_cols=26  Identities=35%  Similarity=0.846  Sum_probs=12.4

Q ss_pred             CccccCc--cccccCChHHHHHHHHHhc
Q psy12560        247 KRFQCKL--CDKIFFTLHNMRRHMRIHK  272 (440)
Q Consensus       247 ~~~~C~~--C~~~f~~~~~L~~H~~~H~  272 (440)
                      +||.|++  |++.|++.+.|.+|+++|+
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            4444444  4444444444444444444

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=8.6e-08  Score=52.03  Aligned_cols=26  Identities=35%  Similarity=0.861  Sum_probs=13.3

Q ss_pred             ccccCc--cccccCChHHHHHHHHHhcC
Q psy12560        248 RFQCKL--CDKIFFTLHNMRRHMRIHKD  273 (440)
Q Consensus       248 ~~~C~~--C~~~f~~~~~L~~H~~~H~~  273 (440)
                      ||.|++  |++.|.+.+.|.+|+++|+|
T Consensus         2 p~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CeECCCCCCCcEECchhHhhhhcCccCC
Confidence            455544  55555555555555555543

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=2.3e-07  Score=49.65  Aligned_cols=18  Identities=33%  Similarity=0.702  Sum_probs=7.5

Q ss_pred             cccccCChHHHHHHHHHh
Q psy12560        254 CDKIFFTLHNMRRHMRIH  271 (440)
Q Consensus       254 C~~~f~~~~~L~~H~~~H  271 (440)
                      |++.|.+.++|++|+++|
T Consensus        10 C~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4          10 CNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCSSTTTTHHHHHHH
T ss_pred             cCCcCCCHHHHHHHHhhc
Confidence            444444444444444443

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=4e-07  Score=45.02  Aligned_cols=23  Identities=35%  Similarity=0.842  Sum_probs=10.3

Q ss_pred             ccCccccccCChHHHHHHHHHhc
Q psy12560        250 QCKLCDKIFFTLHNMRRHMRIHK  272 (440)
Q Consensus       250 ~C~~C~~~f~~~~~L~~H~~~H~  272 (440)
                      +|+.|++.|+++..|..|++.|+
T Consensus         3 kc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           3 KCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             ccchhhhHhcchhHHHHHhhccC
Confidence            44444444444444444444443

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.13  E-value=6.6e-07  Score=49.72  Aligned_cols=28  Identities=32%  Similarity=0.730  Sum_probs=20.0

Q ss_pred             ccccccCc--cCcccCChHHHHHHHHHhCC
Q psy12560        218 KKIFVCEN--CGKSFKRKYDLALHIRTHFP  245 (440)
Q Consensus       218 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~  245 (440)
                      ++||.|++  |++.|...+.|.+|+++|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            46777765  77777777777777777764

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=3.7e-07  Score=49.49  Aligned_cols=27  Identities=37%  Similarity=0.757  Sum_probs=20.2

Q ss_pred             cccccCc--cCcccCChHHHHHHHHHhCC
Q psy12560        219 KIFVCEN--CGKSFKRKYDLALHIRTHFP  245 (440)
Q Consensus       219 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~  245 (440)
                      +||.|++  |++.|...+.|..|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            4677765  88888888888888777764

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=8.5e-07  Score=47.41  Aligned_cols=26  Identities=38%  Similarity=0.714  Sum_probs=19.3

Q ss_pred             cccccCc--cCcccCChHHHHHHHHHhC
Q psy12560        219 KIFVCEN--CGKSFKRKYDLALHIRTHF  244 (440)
Q Consensus       219 ~~~~C~~--C~~~f~~~~~l~~H~~~h~  244 (440)
                      +||.|+.  |+++|...+.|.+|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            4677765  7777777777777777774

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=1.8e-06  Score=44.23  Aligned_cols=25  Identities=36%  Similarity=0.848  Sum_probs=11.7

Q ss_pred             CccccCccccccCChHHHHHHHHHh
Q psy12560        247 KRFQCKLCDKIFFTLHNMRRHMRIH  271 (440)
Q Consensus       247 ~~~~C~~C~~~f~~~~~L~~H~~~H  271 (440)
                      +||.|.+||+.|......++|.++|
T Consensus         2 kPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCcccchhhhhhhcchhhhhhhhhc
Confidence            4444444444444444444444444

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=2.4e-06  Score=45.44  Aligned_cols=31  Identities=45%  Similarity=0.919  Sum_probs=21.3

Q ss_pred             CceeccccccccCChHHHHHHHHHcCCCCCe
Q psy12560        106 AKLSCDICDKTFVNKSHLDYHKLSHQDLNPY  136 (440)
Q Consensus       106 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  136 (440)
                      +...|..||+.|.....|.+|..+|.+++||
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            4456777777777777777777777777766

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.8e-06  Score=42.65  Aligned_cols=26  Identities=46%  Similarity=0.767  Sum_probs=17.6

Q ss_pred             ccccCccCcccCChHHHHHHHHHhCC
Q psy12560        220 IFVCENCGKSFKRKYDLALHIRTHFP  245 (440)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h~~  245 (440)
                      |++|+.|++.|+.+..|..|++.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            35677777777777777777776654

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=3.3e-06  Score=43.94  Aligned_cols=27  Identities=33%  Similarity=0.699  Sum_probs=21.6

Q ss_pred             CceecCc--CccccCChHHHHHHHHhhcC
Q psy12560        275 PLFECHD--CHKSFTRKDNLERHVKSIHL  301 (440)
Q Consensus       275 ~~~~C~~--C~~~f~~~~~l~~H~~~~H~  301 (440)
                      +||.|.+  |+++|...++|++|++++|+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5788876  88888888888888887774

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=3.1e-06  Score=45.04  Aligned_cols=29  Identities=28%  Similarity=0.644  Sum_probs=15.5

Q ss_pred             cccCccccccCChHHHHHHHHHhcCCCce
Q psy12560        249 FQCKLCDKIFFTLHNMRRHMRIHKDRPLF  277 (440)
Q Consensus       249 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~  277 (440)
                      ..|..||+.|.....|.+|...|.+++||
T Consensus         6 ~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            34555555555555555555555555554

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=4.9e-06  Score=42.59  Aligned_cols=27  Identities=33%  Similarity=0.780  Sum_probs=20.1

Q ss_pred             ccccccCccCcccCChHHHHHHHHHhC
Q psy12560        218 KKIFVCENCGKSFKRKYDLALHIRTHF  244 (440)
Q Consensus       218 ~~~~~C~~C~~~f~~~~~l~~H~~~h~  244 (440)
                      ++||.|++||+.|.......+|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            467777777777777777777777763

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=6.8e-06  Score=42.61  Aligned_cols=26  Identities=42%  Similarity=0.833  Sum_probs=13.2

Q ss_pred             cccccCccCcccCChHHHHHHHHHhC
Q psy12560        219 KIFVCENCGKSFKRKYDLALHIRTHF  244 (440)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~  244 (440)
                      +||.|++|+..|..+..+..|.+.|.
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrshd   27 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRSHD   27 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHS
T ss_pred             CCcccchHHHHhhccccceEeeeccc
Confidence            44555555555555555555555544

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=5e-06  Score=42.12  Aligned_cols=27  Identities=22%  Similarity=0.561  Sum_probs=12.4

Q ss_pred             CccccCccccccCChHHHHHHHHHhcC
Q psy12560        247 KRFQCKLCDKIFFTLHNMRRHMRIHKD  273 (440)
Q Consensus       247 ~~~~C~~C~~~f~~~~~L~~H~~~H~~  273 (440)
                      +||+|..|.+.-...+.|..|++.|+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            344444444444444444444444443

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=8.1e-06  Score=42.33  Aligned_cols=27  Identities=33%  Similarity=0.640  Sum_probs=16.2

Q ss_pred             CCceecCcCccccCChHHHHHHHHhhc
Q psy12560        274 RPLFECHDCHKSFTRKDNLERHVKSIH  300 (440)
Q Consensus       274 ~~~~~C~~C~~~f~~~~~l~~H~~~~H  300 (440)
                      ++||.|++|+..|.++..+..|++++-
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshd   27 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHD   27 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHS
T ss_pred             CCCcccchHHHHhhccccceEeeeccc
Confidence            356666666666666666666666443

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=1.9e-05  Score=40.00  Aligned_cols=26  Identities=27%  Similarity=0.735  Sum_probs=11.8

Q ss_pred             CCeecCccccccCChHHHHHHHHHhc
Q psy12560        134 NPYECSNCHKGFKNKGKLNRHMKIHS  159 (440)
Q Consensus       134 ~~~~C~~C~~~f~~~~~L~~H~~~h~  159 (440)
                      +||+|..|.+.-.+.+.|..|++.|.
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~ht   27 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHT   27 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCC
T ss_pred             CcceeeecccccCCchheEEeeeccc
Confidence            34444444444444444444444443

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=3e-05  Score=39.49  Aligned_cols=25  Identities=24%  Similarity=0.555  Sum_probs=11.1

Q ss_pred             cccCccccccCChHHHHHHHHHhcC
Q psy12560        249 FQCKLCDKIFFTLHNMRRHMRIHKD  273 (440)
Q Consensus       249 ~~C~~C~~~f~~~~~L~~H~~~H~~  273 (440)
                      |.|++|+......+.|++|++.|++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~   26 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTD   26 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSS
T ss_pred             ccccccCcccCCHHHHHHHHHHhcC
Confidence            3444444444444444444444444

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=1.8e-05  Score=39.86  Aligned_cols=25  Identities=28%  Similarity=0.647  Sum_probs=14.5

Q ss_pred             cccCccccccCChHHHHHHHHHhcC
Q psy12560        249 FQCKLCDKIFFTLHNMRRHMRIHKD  273 (440)
Q Consensus       249 ~~C~~C~~~f~~~~~L~~H~~~H~~  273 (440)
                      ..|.+||+.|...+.|++|..+|+|
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccC
Confidence            3455566666666666666655555

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=5.3e-05  Score=38.60  Aligned_cols=27  Identities=41%  Similarity=0.795  Sum_probs=21.9

Q ss_pred             cccCccCcccCChHHHHHHHHHhCCCC
Q psy12560        221 FVCENCGKSFKRKYDLALHIRTHFPLK  247 (440)
Q Consensus       221 ~~C~~C~~~f~~~~~l~~H~~~h~~~~  247 (440)
                      |.|+.||......+-|..|+++|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            678888888888888888888888764

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=5.1e-05  Score=38.02  Aligned_cols=25  Identities=36%  Similarity=0.785  Sum_probs=13.8

Q ss_pred             CccccCccccccCChHHHHHHHHHh
Q psy12560        247 KRFQCKLCDKIFFTLHNMRRHMRIH  271 (440)
Q Consensus       247 ~~~~C~~C~~~f~~~~~L~~H~~~H  271 (440)
                      +||+|..|++.-...++|..|+|+|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            4555555555555555555555555

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=4.8e-05  Score=38.72  Aligned_cols=24  Identities=42%  Similarity=0.760  Sum_probs=21.9

Q ss_pred             ceecCcCccccCChHHHHHHHHhh
Q psy12560        276 LFECHDCHKSFTRKDNLERHVKSI  299 (440)
Q Consensus       276 ~~~C~~C~~~f~~~~~l~~H~~~~  299 (440)
                      ||.|..|..+|.++.+|.+||++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            689999999999999999999864

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=5.2e-05  Score=39.36  Aligned_cols=26  Identities=31%  Similarity=0.727  Sum_probs=14.7

Q ss_pred             CccccCc--cccccCChHHHHHHHHHhc
Q psy12560        247 KRFQCKL--CDKIFFTLHNMRRHMRIHK  272 (440)
Q Consensus       247 ~~~~C~~--C~~~f~~~~~L~~H~~~H~  272 (440)
                      +||.|.+  |+++|+..++|++|++.++
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            3555544  5566666666666665544

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=6.6e-05  Score=38.40  Aligned_cols=27  Identities=26%  Similarity=0.565  Sum_probs=24.4

Q ss_pred             CceecCcCccccCChHHHHHHHHhhcC
Q psy12560        275 PLFECHDCHKSFTRKDNLERHVKSIHL  301 (440)
Q Consensus       275 ~~~~C~~C~~~f~~~~~l~~H~~~~H~  301 (440)
                      +||.|.+|.+.....++|+.|+++.|.
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            589999999999999999999998886

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=6.8e-05  Score=42.22  Aligned_cols=27  Identities=37%  Similarity=0.717  Sum_probs=23.9

Q ss_pred             cCCCceecCcCccccCChHHHHHHHHh
Q psy12560        272 KDRPLFECHDCHKSFTRKDNLERHVKS  298 (440)
Q Consensus       272 ~~~~~~~C~~C~~~f~~~~~l~~H~~~  298 (440)
                      +|-+||.|.+|++.|-++.++.+|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            477999999999999999999999753

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.34  E-value=8.3e-05  Score=36.79  Aligned_cols=24  Identities=42%  Similarity=0.703  Sum_probs=10.7

Q ss_pred             cCccCcccCChHHHHHHHHHhCCC
Q psy12560        223 CENCGKSFKRKYDLALHIRTHFPL  246 (440)
Q Consensus       223 C~~C~~~f~~~~~l~~H~~~h~~~  246 (440)
                      |+.|.+.|.++..|..|-+.|+|+
T Consensus         3 cp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           3 CPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             CcchHHHHHHhHhhhhccccccCC
Confidence            444444444444444444444443

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.30  E-value=0.00013  Score=36.13  Aligned_cols=27  Identities=26%  Similarity=0.557  Sum_probs=20.4

Q ss_pred             cccCccccccCChHHHHHHHHHhcCCC
Q psy12560        249 FQCKLCDKIFFTLHNMRRHMRIHKDRP  275 (440)
Q Consensus       249 ~~C~~C~~~f~~~~~L~~H~~~H~~~~  275 (440)
                      .+|+.|.+.|.++..|+.|-+.|+|++
T Consensus         1 vqcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           1 VECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             CcCcchHHHHHHhHhhhhccccccCCC
Confidence            047788888888888888888888764

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=9.6e-05  Score=37.72  Aligned_cols=27  Identities=30%  Similarity=0.579  Sum_probs=24.2

Q ss_pred             CceecCcCccccCChHHHHHHHHhhcC
Q psy12560        275 PLFECHDCHKSFTRKDNLERHVKSIHL  301 (440)
Q Consensus       275 ~~~~C~~C~~~f~~~~~l~~H~~~~H~  301 (440)
                      +||+|..|.....+.++|.+|++..|+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            589999999999999999999998875

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=6.6e-05  Score=37.75  Aligned_cols=24  Identities=38%  Similarity=0.668  Sum_probs=13.6

Q ss_pred             ccCccCcccCChHHHHHHHHHhCC
Q psy12560        222 VCENCGKSFKRKYDLALHIRTHFP  245 (440)
Q Consensus       222 ~C~~C~~~f~~~~~l~~H~~~h~~  245 (440)
                      .|..||+.|...+.|.+|..+|++
T Consensus         4 vc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           4 VCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             hHHHHhHHHHHHHHHHHHhhcccC
Confidence            455555555555555555555554

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.20  E-value=9.6e-05  Score=35.93  Aligned_cols=19  Identities=37%  Similarity=0.892  Sum_probs=7.0

Q ss_pred             cCccccccCChHHHHHHHH
Q psy12560        251 CKLCDKIFFTLHNMRRHMR  269 (440)
Q Consensus       251 C~~C~~~f~~~~~L~~H~~  269 (440)
                      |..|.+.|..++.|.+|++
T Consensus         3 cglcersfveksalsrhqr   21 (26)
T d1znfa_           3 CGLCERSFVEKSALSRHQR   21 (26)
T ss_dssp             CSSSCCBCSSHHHHHHHGG
T ss_pred             ccchHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.19  E-value=0.00011  Score=38.46  Aligned_cols=26  Identities=42%  Similarity=0.834  Sum_probs=23.6

Q ss_pred             ceecCcCccccCChHHHHHHHHhhcC
Q psy12560        276 LFECHDCHKSFTRKDNLERHVKSIHL  301 (440)
Q Consensus       276 ~~~C~~C~~~f~~~~~l~~H~~~~H~  301 (440)
                      ||.|.+|++.|.++.-|.+|.+..|+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            68999999999999999999988885

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00021  Score=35.80  Aligned_cols=26  Identities=38%  Similarity=0.949  Sum_probs=16.0

Q ss_pred             CCeecCccccccCChHHHHHHHHHhc
Q psy12560        134 NPYECSNCHKGFKNKGKLNRHMKIHS  159 (440)
Q Consensus       134 ~~~~C~~C~~~f~~~~~L~~H~~~h~  159 (440)
                      +||+|..|++.-...++|.+|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            45666666666666666666666653

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.05  E-value=0.0002  Score=40.20  Aligned_cols=22  Identities=23%  Similarity=0.638  Sum_probs=10.9

Q ss_pred             ceecCcCccccCChHHHHHHHH
Q psy12560        276 LFECHDCHKSFTRKDNLERHVK  297 (440)
Q Consensus       276 ~~~C~~C~~~f~~~~~l~~H~~  297 (440)
                      .|+|.+|++.|.+...|--||+
T Consensus         5 ~~~C~~C~k~F~s~qALGGH~~   26 (37)
T d1njqa_           5 SYTCSFCKREFRSAQALGGHMN   26 (37)
T ss_dssp             SEECTTTCCEESSHHHHHHHHH
T ss_pred             ccCCCCCCCccCCcccccchHh
Confidence            3445555555555555555544

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00021  Score=36.31  Aligned_cols=23  Identities=52%  Similarity=1.120  Sum_probs=17.1

Q ss_pred             CeecCccccccCChHHHHHHHHH
Q psy12560        135 PYECSNCHKGFKNKGKLNRHMKI  157 (440)
Q Consensus       135 ~~~C~~C~~~f~~~~~L~~H~~~  157 (440)
                      ||.|..|+..|.++.+|..||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            57777777777777777777764

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.90  E-value=0.00028  Score=34.27  Aligned_cols=23  Identities=39%  Similarity=0.740  Sum_probs=16.6

Q ss_pred             cccCccCcccCChHHHHHHHHHh
Q psy12560        221 FVCENCGKSFKRKYDLALHIRTH  243 (440)
Q Consensus       221 ~~C~~C~~~f~~~~~l~~H~~~h  243 (440)
                      |+|..|.++|..++.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            56777777777777777777666

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.81  E-value=0.00037  Score=39.09  Aligned_cols=26  Identities=27%  Similarity=0.521  Sum_probs=15.5

Q ss_pred             ceeecccchhhccChHHHHHhHhhcC
Q psy12560         78 VMYKCLKCKRQFKVKYNCKYHIHCTS  103 (440)
Q Consensus        78 ~~~~C~~C~~~f~~~~~l~~H~~~~~  103 (440)
                      +.|+|..|++.|.+...|--|++.|.
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             CccCCCCCCCccCCcccccchHhhhc
Confidence            34666666666666666666665554

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.78  E-value=0.00055  Score=34.65  Aligned_cols=24  Identities=33%  Similarity=0.726  Sum_probs=9.7

Q ss_pred             cccCccccccCChHHHHHHHHHhc
Q psy12560        249 FQCKLCDKIFFTLHNMRRHMRIHK  272 (440)
Q Consensus       249 ~~C~~C~~~f~~~~~L~~H~~~H~  272 (440)
                      |.|..|...|...-.|+.||-.|+
T Consensus         5 ftcs~cqe~f~rrmelr~hmvsht   28 (30)
T d2dlqa3           5 FTCSVCQETFRRRMELRLHMVSHT   28 (30)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHS
T ss_pred             EEeHHHHHHHHHHHhheeeeeccc
Confidence            334444444444444444444443

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.0004  Score=39.02  Aligned_cols=26  Identities=27%  Similarity=0.689  Sum_probs=21.3

Q ss_pred             CCCCccccCccccccCChHHHHHHHH
Q psy12560        244 FPLKRFQCKLCDKIFFTLHNMRRHMR  269 (440)
Q Consensus       244 ~~~~~~~C~~C~~~f~~~~~L~~H~~  269 (440)
                      +|.+||.|.+|++.|....++.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            46788888888888888888888864

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.75  E-value=0.00066  Score=34.37  Aligned_cols=24  Identities=17%  Similarity=0.645  Sum_probs=10.4

Q ss_pred             eecccchhhccChHHHHHhHhhcC
Q psy12560         80 YKCLKCKRQFKVKYNCKYHIHCTS  103 (440)
Q Consensus        80 ~~C~~C~~~f~~~~~l~~H~~~~~  103 (440)
                      |.|..|..+|...-.|+.||..|+
T Consensus         5 ftcs~cqe~f~rrmelr~hmvsht   28 (30)
T d2dlqa3           5 FTCSVCQETFRRRMELRLHMVSHT   28 (30)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHS
T ss_pred             EEeHHHHHHHHHHHhheeeeeccc
Confidence            444444444444444444444443

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.65  E-value=0.00049  Score=34.97  Aligned_cols=27  Identities=41%  Similarity=0.789  Sum_probs=15.9

Q ss_pred             ccccCc--cccccCChHHHHHHHHHhcCC
Q psy12560        248 RFQCKL--CDKIFFTLHNMRRHMRIHKDR  274 (440)
Q Consensus       248 ~~~C~~--C~~~f~~~~~L~~H~~~H~~~  274 (440)
                      ||.|.+  |.+.|.+...|.+|..+|+|+
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CcCcccccccccchhhhhhhhhhccccCC
Confidence            555543  666666666666666666553

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.65  E-value=0.00064  Score=34.40  Aligned_cols=15  Identities=40%  Similarity=0.786  Sum_probs=6.4

Q ss_pred             CccccCChHHHHHHH
Q psy12560        282 CHKSFTRKDNLERHV  296 (440)
Q Consensus       282 C~~~f~~~~~l~~H~  296 (440)
                      |++.|...+.|++|.
T Consensus        11 cdk~fs~ps~lkrhe   25 (29)
T d2j7ja2          11 CDKRFSLPSRLKRHE   25 (29)
T ss_dssp             CCCEESSHHHHHHHH
T ss_pred             ccccccCHHHHhhhh
Confidence            444444444444443

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.61  E-value=0.00091  Score=32.40  Aligned_cols=24  Identities=25%  Similarity=0.784  Sum_probs=17.4

Q ss_pred             ceecCcCccccCChHHHHHHHHhh
Q psy12560        276 LFECHDCHKSFTRKDNLERHVKSI  299 (440)
Q Consensus       276 ~~~C~~C~~~f~~~~~l~~H~~~~  299 (440)
                      ||+|..|...|.++.+|..||-..
T Consensus         2 pykcsscsqqfmqkkdlqshmikl   25 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIKL   25 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHT
T ss_pred             CCcccHHHHHHHHHHHHHHHHHhc
Confidence            677777777777777777776543

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.0013  Score=33.55  Aligned_cols=24  Identities=25%  Similarity=0.515  Sum_probs=12.4

Q ss_pred             ccccCccCcccCChHHHHHHHHHh
Q psy12560        220 IFVCENCGKSFKRKYDLALHIRTH  243 (440)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h  243 (440)
                      ||.|..|.....+.++|..|+++.
T Consensus         2 py~cqyc~yrsadssnlkthiktk   25 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTK   25 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHH
T ss_pred             Cccccccccccccchhhhhhhhcc
Confidence            455555555555555555555543

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.56  E-value=0.0011  Score=33.56  Aligned_cols=24  Identities=50%  Similarity=1.090  Sum_probs=14.1

Q ss_pred             CeecCc--cccccCChHHHHHHHHHh
Q psy12560        135 PYECSN--CHKGFKNKGKLNRHMKIH  158 (440)
Q Consensus       135 ~~~C~~--C~~~f~~~~~L~~H~~~h  158 (440)
                      ||+|+.  |++.|...+.|++|.+.|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            566643  666666666666665554

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0014  Score=33.35  Aligned_cols=27  Identities=30%  Similarity=0.672  Sum_probs=17.1

Q ss_pred             CCeecCccccccCChHHHHHHHHHhcC
Q psy12560        134 NPYECSNCHKGFKNKGKLNRHMKIHSD  160 (440)
Q Consensus       134 ~~~~C~~C~~~f~~~~~L~~H~~~h~~  160 (440)
                      +||+|..|.......++|..|++.-|+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            466666666666666666666655443

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.00074  Score=35.26  Aligned_cols=21  Identities=24%  Similarity=0.711  Sum_probs=10.9

Q ss_pred             ceecCc--CccccCChHHHHHHH
Q psy12560        276 LFECHD--CHKSFTRKDNLERHV  296 (440)
Q Consensus       276 ~~~C~~--C~~~f~~~~~l~~H~  296 (440)
                      ||.|.+  |.|.|...++-.+|+
T Consensus         2 PY~C~~~gC~KafsNsSDraKHq   24 (31)
T d2glia4           2 PYMCEHEGCSKAFSNASDRAKHQ   24 (31)
T ss_dssp             CEECCSTTCCCEESSSSTTHHHH
T ss_pred             CccccCCChhhhhcchhhhhhhc
Confidence            455544  555555555555554

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.17  E-value=0.0016  Score=32.35  Aligned_cols=22  Identities=45%  Similarity=0.836  Sum_probs=19.9

Q ss_pred             ceecCcCccccCChHHHHHHHH
Q psy12560        276 LFECHDCHKSFTRKDNLERHVK  297 (440)
Q Consensus       276 ~~~C~~C~~~f~~~~~l~~H~~  297 (440)
                      ||+|..||+.|.++.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            6899999999999999999965

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0023  Score=31.94  Aligned_cols=25  Identities=32%  Similarity=0.736  Sum_probs=19.9

Q ss_pred             ceecCcCccccCChHHHHHHHHhhc
Q psy12560        276 LFECHDCHKSFTRKDNLERHVKSIH  300 (440)
Q Consensus       276 ~~~C~~C~~~f~~~~~l~~H~~~~H  300 (440)
                      .|.|+.|+....++++|+.|++..|
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CccCCcchhheeehhhhhHHhhhcc
Confidence            3778888888888888888888666

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.03  E-value=0.0015  Score=34.08  Aligned_cols=22  Identities=27%  Similarity=0.692  Sum_probs=14.5

Q ss_pred             ccccCccccccCChHHHHHHHH
Q psy12560        248 RFQCKLCDKIFFTLHNMRRHMR  269 (440)
Q Consensus       248 ~~~C~~C~~~f~~~~~L~~H~~  269 (440)
                      ||.|.+|++.|.....|.+|..
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~q   22 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQ   22 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHT
T ss_pred             CcccccccchhhHHHHHHHHHH
Confidence            4666666666666666666654

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0026  Score=31.82  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=14.7

Q ss_pred             cccCccccccCChHHHHHHHHHh
Q psy12560        249 FQCKLCDKIFFTLHNMRRHMRIH  271 (440)
Q Consensus       249 ~~C~~C~~~f~~~~~L~~H~~~H  271 (440)
                      -+|+.|.++.+++..|+.|.|+|
T Consensus         3 ekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           3 EKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGG
T ss_pred             ccCcccccccCcHHHHHHhhccc
Confidence            45666666666666666666665

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.94  E-value=0.0035  Score=30.45  Aligned_cols=24  Identities=58%  Similarity=1.028  Sum_probs=17.3

Q ss_pred             eecCcCccccCChHHHHHHHHhhc
Q psy12560        277 FECHDCHKSFTRKDNLERHVKSIH  300 (440)
Q Consensus       277 ~~C~~C~~~f~~~~~l~~H~~~~H  300 (440)
                      |.|+.|-+.|.++.++..|++..|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            667777777777777777776555

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.87  E-value=0.003  Score=30.55  Aligned_cols=22  Identities=45%  Similarity=0.978  Sum_probs=17.3

Q ss_pred             CeecCccccccCChHHHHHHHH
Q psy12560        135 PYECSNCHKGFKNKGKLNRHMK  156 (440)
Q Consensus       135 ~~~C~~C~~~f~~~~~L~~H~~  156 (440)
                      ||+|..|...|..+.+|..||.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            6788888888888888888764

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0035  Score=34.72  Aligned_cols=26  Identities=38%  Similarity=0.842  Sum_probs=13.6

Q ss_pred             cccccc--CccCcccCChHHHHHHHHHh
Q psy12560        218 KKIFVC--ENCGKSFKRKYDLALHIRTH  243 (440)
Q Consensus       218 ~~~~~C--~~C~~~f~~~~~l~~H~~~h  243 (440)
                      ++||.|  +-|+.+|.+...|..|...|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            455555  34555555555555555444

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0057  Score=30.57  Aligned_cols=23  Identities=35%  Similarity=0.650  Sum_probs=14.0

Q ss_pred             eecCccccccCChHHHHHHHHHh
Q psy12560        136 YECSNCHKGFKNKGKLNRHMKIH  158 (440)
Q Consensus       136 ~~C~~C~~~f~~~~~L~~H~~~h  158 (440)
                      -+|+.|.++..++..|+.|.++|
T Consensus         3 ekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           3 EKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGG
T ss_pred             ccCcccccccCcHHHHHHhhccc
Confidence            45666666666666666666655

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0063  Score=33.65  Aligned_cols=27  Identities=33%  Similarity=0.715  Sum_probs=18.0

Q ss_pred             CCCCeec--CccccccCChHHHHHHHHHh
Q psy12560        132 DLNPYEC--SNCHKGFKNKGKLNRHMKIH  158 (440)
Q Consensus       132 ~~~~~~C--~~C~~~f~~~~~L~~H~~~h  158 (440)
                      .++||.|  +-|+.+|.+...|..|...|
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhh
Confidence            3567777  44777777777777776655

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0031  Score=32.87  Aligned_cols=28  Identities=29%  Similarity=0.659  Sum_probs=24.4

Q ss_pred             CccccCc--cccccCChHHHHHHH-HHhcCC
Q psy12560        247 KRFQCKL--CDKIFFTLHNMRRHM-RIHKDR  274 (440)
Q Consensus       247 ~~~~C~~--C~~~f~~~~~L~~H~-~~H~~~  274 (440)
                      +||.|.+  |.+.|+..+.-.+|+ |+|..+
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccCC
Confidence            6899987  999999999999997 778653

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.52  E-value=0.0032  Score=31.92  Aligned_cols=28  Identities=39%  Similarity=0.535  Sum_probs=20.0

Q ss_pred             ccccc--CccCcccCChHHHHHHHHHhCCC
Q psy12560        219 KIFVC--ENCGKSFKRKYDLALHIRTHFPL  246 (440)
Q Consensus       219 ~~~~C--~~C~~~f~~~~~l~~H~~~h~~~  246 (440)
                      +||.|  +-|.+.|.+...|.+|..+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            35666  34778888888888887777764

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.23  E-value=0.0075  Score=29.91  Aligned_cols=22  Identities=32%  Similarity=0.738  Sum_probs=15.2

Q ss_pred             ccccCccccccCChHHHHHHHH
Q psy12560        248 RFQCKLCDKIFFTLHNMRRHMR  269 (440)
Q Consensus       248 ~~~C~~C~~~f~~~~~L~~H~~  269 (440)
                      ||+|..||+.|-.+.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            4677777777777777777654

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.0086  Score=34.80  Aligned_cols=20  Identities=35%  Similarity=0.647  Sum_probs=10.9

Q ss_pred             ecCcCccccCChHHHHHHHH
Q psy12560        278 ECHDCHKSFTRKDNLERHVK  297 (440)
Q Consensus       278 ~C~~C~~~f~~~~~l~~H~~  297 (440)
                      .|..|||.|+....|+.|..
T Consensus         8 pCG~CgK~Ftd~~rLr~HEA   27 (53)
T d2eppa1           8 PCGLCGKVFTDANRLRQHEA   27 (53)
T ss_dssp             CCTTTCCCCSCHHHHHHHHH
T ss_pred             eccccccccCCHHHHhHhHH
Confidence            35555555555555555544

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.66  E-value=0.024  Score=30.10  Aligned_cols=25  Identities=36%  Similarity=0.842  Sum_probs=19.4

Q ss_pred             ceecCcCccccCChHHHHHHHHhhc
Q psy12560        276 LFECHDCHKSFTRKDNLERHVKSIH  300 (440)
Q Consensus       276 ~~~C~~C~~~f~~~~~l~~H~~~~H  300 (440)
                      .|.|..||++|.++..+.+|....-
T Consensus         4 afvcskcgktftrrntm~rha~nc~   28 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCA   28 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCC
T ss_pred             eeeecccccchhcchHHHHHhhhcC
Confidence            4788888888888888888877543

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.51  E-value=0.012  Score=28.45  Aligned_cols=22  Identities=36%  Similarity=0.754  Sum_probs=17.5

Q ss_pred             cccCccccccCChHHHHHHHHH
Q psy12560        249 FQCKLCDKIFFTLHNMRRHMRI  270 (440)
Q Consensus       249 ~~C~~C~~~f~~~~~L~~H~~~  270 (440)
                      |.|+.|-+.|+++.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            6788888888888888888765

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.024  Score=30.08  Aligned_cols=26  Identities=31%  Similarity=0.535  Sum_probs=19.5

Q ss_pred             ccccCccccccCChHHHHHHHHHhcC
Q psy12560        248 RFQCKLCDKIFFTLHNMRRHMRIHKD  273 (440)
Q Consensus       248 ~~~C~~C~~~f~~~~~L~~H~~~H~~  273 (440)
                      .|.|..|++.|++...+.+|.....|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            47788888888888888887766554

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.028  Score=27.92  Aligned_cols=23  Identities=17%  Similarity=0.447  Sum_probs=17.0

Q ss_pred             eecccchhhccChHHHHHhHhhc
Q psy12560         80 YKCLKCKRQFKVKYNCKYHIHCT  102 (440)
Q Consensus        80 ~~C~~C~~~f~~~~~l~~H~~~~  102 (440)
                      |.|+.|+.....+++|+.|++.-
T Consensus         3 ~qcphc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHT
T ss_pred             ccCCcchhheeehhhhhHHhhhc
Confidence            67777877777777777777643

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.44  E-value=0.03  Score=32.46  Aligned_cols=23  Identities=35%  Similarity=0.629  Sum_probs=14.6

Q ss_pred             cccCccCcccCChHHHHHHHHHh
Q psy12560        221 FVCENCGKSFKRKYDLALHIRTH  243 (440)
Q Consensus       221 ~~C~~C~~~f~~~~~l~~H~~~h  243 (440)
                      |.|..|++.|.....|+.|...|
T Consensus         7 ~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           7 LPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             eeccccccccCCHHHHhHhHHhc
Confidence            56666666666666666666555

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.62  E-value=0.069  Score=30.78  Aligned_cols=31  Identities=26%  Similarity=0.491  Sum_probs=22.3

Q ss_pred             CCceecCcCccccCChHHHHHHHHhhcCCCC
Q psy12560        274 RPLFECHDCHKSFTRKDNLERHVKSIHLEDP  304 (440)
Q Consensus       274 ~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~  304 (440)
                      +.|-.|++|+...++..+|++|+...|-.+|
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel~hf~kp   52 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHHHTSCSC
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHhhccC
Confidence            4567788888888888888888776665443

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.46  E-value=0.049  Score=28.98  Aligned_cols=29  Identities=24%  Similarity=0.537  Sum_probs=23.1

Q ss_pred             CCCceecCcCccccCChHHHHHHHHhhcC
Q psy12560        273 DRPLFECHDCHKSFTRKDNLERHVKSIHL  301 (440)
Q Consensus       273 ~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  301 (440)
                      |+..|+|.+|.+.|..-+++-+|.-+.|.
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtSHk   33 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTSHK   33 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhhcc
Confidence            44568888888888888888888777664

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.45  E-value=0.076  Score=26.74  Aligned_cols=25  Identities=32%  Similarity=0.659  Sum_probs=17.8

Q ss_pred             eecCcCccccCChHHHHHHHHhhcC
Q psy12560        277 FECHDCHKSFTRKDNLERHVKSIHL  301 (440)
Q Consensus       277 ~~C~~C~~~f~~~~~l~~H~~~~H~  301 (440)
                      |.|..||+...+...++.|+...|.
T Consensus         3 ftc~hcgkqlks~~gmkyhvmadhn   27 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMANHN   27 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             eechhHHHHHhhccCceEEEeeccc
Confidence            6677777777777777777665553

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.31  E-value=0.051  Score=27.93  Aligned_cols=20  Identities=15%  Similarity=0.433  Sum_probs=11.1

Q ss_pred             cccccCChHHHHHHHHHhcC
Q psy12560        254 CDKIFFTLHNMRRHMRIHKD  273 (440)
Q Consensus       254 C~~~f~~~~~L~~H~~~H~~  273 (440)
                      |+..|.....|..|+-.|+|
T Consensus        11 C~A~ynk~wkL~AHLckHTG   30 (31)
T d1tf3a1          11 CGAAYNKNWKLQAHLSKHTG   30 (31)
T ss_dssp             GCCEESSHHHHHHHHHHHHC
T ss_pred             cchhhccchhhhHHhhhhcC
Confidence            55555555555555555554

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.06  E-value=0.054  Score=29.15  Aligned_cols=17  Identities=29%  Similarity=0.262  Sum_probs=8.4

Q ss_pred             ccCChHHHHHHHHHhcC
Q psy12560        257 IFFTLHNMRRHMRIHKD  273 (440)
Q Consensus       257 ~f~~~~~L~~H~~~H~~  273 (440)
                      .|.....|..|+|.|+|
T Consensus        16 pf~a~YkLv~H~R~HTg   32 (33)
T d2glia2          16 PFKAQYMLVVHMRRHTG   32 (33)
T ss_dssp             CCSSHHHHHHHTHHHHC
T ss_pred             cchhHHHHHHHHhhcCC
Confidence            34444555555555544

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.51  E-value=0.2  Score=25.18  Aligned_cols=22  Identities=27%  Similarity=0.792  Sum_probs=12.2

Q ss_pred             cccCccCcccCChHHHHHHHHH
Q psy12560        221 FVCENCGKSFKRKYDLALHIRT  242 (440)
Q Consensus       221 ~~C~~C~~~f~~~~~l~~H~~~  242 (440)
                      |.|..||+...+...+..|+..
T Consensus         3 ftc~hcgkqlks~~gmkyhvma   24 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMA   24 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHH
T ss_pred             eechhHHHHHhhccCceEEEee
Confidence            4555555555555555555543

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.23  E-value=0.077  Score=27.79  Aligned_cols=22  Identities=32%  Similarity=0.615  Sum_probs=18.8

Q ss_pred             ceecCcCccccCChHHHHHHHH
Q psy12560        276 LFECHDCHKSFTRKDNLERHVK  297 (440)
Q Consensus       276 ~~~C~~C~~~f~~~~~l~~H~~  297 (440)
                      .|.|.-||..|.+.+.|..|+.
T Consensus         8 rf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ceeccccceeecChhHHHhhhh
Confidence            4889999999999999998864

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.13  E-value=0.076  Score=28.55  Aligned_cols=20  Identities=35%  Similarity=0.549  Sum_probs=14.9

Q ss_pred             CcccCChHHHHHHHHHhCCC
Q psy12560        227 GKSFKRKYDLALHIRTHFPL  246 (440)
Q Consensus       227 ~~~f~~~~~l~~H~~~h~~~  246 (440)
                      ++.|.....|..|+|+|+||
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            34577888888888888775

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.74  E-value=0.071  Score=33.71  Aligned_cols=36  Identities=17%  Similarity=0.501  Sum_probs=25.1

Q ss_pred             ceeecccchhhccChHHHHHhHhhcCCCCceeccccccc
Q psy12560         78 VMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKT  116 (440)
Q Consensus        78 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~  116 (440)
                      ..|+|+.|+++|.....+..   .-.....|.|..|+-.
T Consensus        13 ~~y~Cp~C~~~ys~Lda~~L---~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_          13 ASFKCPVCSSTFTDLEANQL---FDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             SEEECSSSCCEEEHHHHHHH---EETTTTEEBCSSSCCB
T ss_pred             CceECCCCCCCcchhhHHHh---cCcCCCeEEecCCCCE
Confidence            56888888888887766544   3344567888888654

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.29  E-value=0.091  Score=27.49  Aligned_cols=21  Identities=29%  Similarity=0.611  Sum_probs=13.7

Q ss_pred             ceeccccccccCChHHHHHHH
Q psy12560        107 KLSCDICDKTFVNKSHLDYHK  127 (440)
Q Consensus       107 ~~~C~~C~~~f~~~~~l~~H~  127 (440)
                      .|.|.-||.+|.+.+.|..|+
T Consensus         8 rf~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHT
T ss_pred             ceeccccceeecChhHHHhhh
Confidence            466666666666666666664

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=88.68  E-value=0.12  Score=26.46  Aligned_cols=27  Identities=22%  Similarity=0.778  Sum_probs=20.2

Q ss_pred             cccc--CccCcccCChHHHHHHHHHhCCC
Q psy12560        220 IFVC--ENCGKSFKRKYDLALHIRTHFPL  246 (440)
Q Consensus       220 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~  246 (440)
                      .|.|  +.|+..|.....|..|+-.|+|+
T Consensus         3 ~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           3 RYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             ceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            4666  45888888888888888877764

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.75  E-value=0.16  Score=25.28  Aligned_cols=18  Identities=28%  Similarity=0.702  Sum_probs=10.8

Q ss_pred             cccccCCHHHHHHHHHHh
Q psy12560        170 CNKALMSVESLKKHMKIH  187 (440)
Q Consensus       170 C~~~f~~~~~l~~H~~~h  187 (440)
                      |++.|.+.+.+++|+.+|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            566666666666665544

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.69  E-value=0.14  Score=25.55  Aligned_cols=18  Identities=39%  Similarity=0.814  Sum_probs=12.8

Q ss_pred             cccccCChHHHHHHHHHh
Q psy12560        254 CDKIFFTLHNMRRHMRIH  271 (440)
Q Consensus       254 C~~~f~~~~~L~~H~~~H  271 (440)
                      |.+.|...+.+++|+.+|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            677777777777777666

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=87.06  E-value=0.18  Score=24.66  Aligned_cols=18  Identities=28%  Similarity=0.506  Sum_probs=8.6

Q ss_pred             cccccCChHHHHHHHHHh
Q psy12560        254 CDKIFFTLHNMRRHMRIH  271 (440)
Q Consensus       254 C~~~f~~~~~L~~H~~~H  271 (440)
                      |++.|.....|+.|+-+|
T Consensus         9 c~kafkkhnqlkvhqf~h   26 (28)
T d2j7ja1           9 CGKAFKKHNQLKVHQFSH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHHHH
T ss_pred             chHHHhhccceEEEeecc
Confidence            444444444444444444

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.56  E-value=0.16  Score=32.00  Aligned_cols=36  Identities=22%  Similarity=0.619  Sum_probs=17.9

Q ss_pred             CCceeccccccccCChHHHHHHHHHcCCCCCeecCcccc
Q psy12560        105 KAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHK  143 (440)
Q Consensus       105 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~  143 (440)
                      ...|.|+.|+++|.....+..   .-.....|.|..|+.
T Consensus        12 ~~~y~Cp~C~~~ys~Lda~~L---~d~~~~~F~C~~C~~   47 (62)
T d1vd4a_          12 RASFKCPVCSSTFTDLEANQL---FDPMTGTFRCTFCHT   47 (62)
T ss_dssp             SSEEECSSSCCEEEHHHHHHH---EETTTTEEBCSSSCC
T ss_pred             CCceECCCCCCCcchhhHHHh---cCcCCCeEEecCCCC
Confidence            345666666666654333222   222334466666653

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.52  E-value=0.11  Score=33.48  Aligned_cols=23  Identities=35%  Similarity=0.740  Sum_probs=17.3

Q ss_pred             ceecCcCccccCChHHHHHHHHh
Q psy12560        276 LFECHDCHKSFTRKDNLERHVKS  298 (440)
Q Consensus       276 ~~~C~~C~~~f~~~~~l~~H~~~  298 (440)
                      .|.|..|++.|.+...|..|+++
T Consensus        15 qfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTC
T ss_pred             EEecccccCccCCHHHHHHHHcc
Confidence            47788888888888888777664

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=83.88  E-value=0.52  Score=27.02  Aligned_cols=23  Identities=17%  Similarity=0.392  Sum_probs=11.6

Q ss_pred             cccccCccCcccCChHHHHHHHH
Q psy12560        219 KIFVCENCGKSFKRKYDLALHIR  241 (440)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~  241 (440)
                      .|-.|++|+.......+|.+|+.
T Consensus        23 qpatcpic~avirqsrnlrrhle   45 (54)
T d1yuja_          23 QPATCPICYAVIRQSRNLRRHLE   45 (54)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHH
Confidence            34455555555555555555544

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.39  E-value=0.13  Score=33.14  Aligned_cols=24  Identities=25%  Similarity=0.621  Sum_probs=20.2

Q ss_pred             CccccCccccccCChHHHHHHHHH
Q psy12560        247 KRFQCKLCDKIFFTLHNMRRHMRI  270 (440)
Q Consensus       247 ~~~~C~~C~~~f~~~~~L~~H~~~  270 (440)
                      ..|.|..|++.|.+...|..|+++
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CEEecccccCccCCHHHHHHHHcc
Confidence            348899999999999999998754

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.31  E-value=0.26  Score=27.39  Aligned_cols=25  Identities=24%  Similarity=0.490  Sum_probs=13.5

Q ss_pred             CccccCccccccCChHHHHHHHHHhcCCCceecCcCcc
Q psy12560        247 KRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHK  284 (440)
Q Consensus       247 ~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~  284 (440)
                      +-|.|..||..+             .|+.|-.|++|+.
T Consensus         4 ~~~~C~vCG~i~-------------~g~~P~~CPvCg~   28 (37)
T d1nnqa2           4 KVYICPICGYTA-------------VDEAPEYCPVCGA   28 (37)
T ss_dssp             CEEECTTTCCEE-------------ESCCCSBCTTTCC
T ss_pred             cEEECCCCCCEe-------------cCCCCCcCCCCCC
Confidence            345666666543             2344556666653

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=80.83  E-value=0.7  Score=24.40  Aligned_cols=23  Identities=17%  Similarity=0.532  Sum_probs=12.2

Q ss_pred             ccccCccCcccCChHHHHHHHHH
Q psy12560        220 IFVCENCGKSFKRKYDLALHIRT  242 (440)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~  242 (440)
                      .|.|.+|.+.+...+++-+|.-+
T Consensus         8 ~yRC~~C~r~YTHISNFCRHyvt   30 (37)
T d2drpa1           8 TYRCKVCSRVYTHISNFCRHYVT   30 (37)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHH
T ss_pred             EEEeehhhHHHHHHHHHHHHHHh
Confidence            45555555555555555555443

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=80.82  E-value=0.89  Score=22.70  Aligned_cols=24  Identities=38%  Similarity=0.901  Sum_probs=15.9

Q ss_pred             eecC--cCccccCChHHHHHHHHhhc
Q psy12560        277 FECH--DCHKSFTRKDNLERHVKSIH  300 (440)
Q Consensus       277 ~~C~--~C~~~f~~~~~l~~H~~~~H  300 (440)
                      |.|.  .|+..|..+.++++|....|
T Consensus         3 f~cdsd~cdl~fttkanmkkhfnrfh   28 (31)
T d1tf3a3           3 FTCDSDGCDLRFTTKANMKKHFNRFH   28 (31)
T ss_dssp             EECSSSSCCCEESSHHHHHHHHHHHT
T ss_pred             ccccCCCcceEEeehHHHHHHHhhhc
Confidence            5553  47777777777777766555

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.48  E-value=0.47  Score=29.39  Aligned_cols=27  Identities=30%  Similarity=0.733  Sum_probs=21.6

Q ss_pred             CccccCccccccCChHHHHHHHHHhcC
Q psy12560        247 KRFQCKLCDKIFFTLHNMRRHMRIHKD  273 (440)
Q Consensus       247 ~~~~C~~C~~~f~~~~~L~~H~~~H~~  273 (440)
                      ..|+|..|+..|.+...|..|+..|..
T Consensus        17 ~~yQC~HCd~K~~s~~el~~hl~~hne   43 (75)
T d1x6fa1          17 STYQCKHCDSKLQSTAELTSHLNIHNE   43 (75)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             ceeeechhHHHHhhHHHHHHHHHhccH
Confidence            458888888888888888888887753

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=80.08  E-value=0.38  Score=26.49  Aligned_cols=11  Identities=36%  Similarity=0.772  Sum_probs=5.9

Q ss_pred             CccccCccccc
Q psy12560        247 KRFQCKLCDKI  257 (440)
Q Consensus       247 ~~~~C~~C~~~  257 (440)
                      +-|.|.+||..
T Consensus         4 ~~~vC~vCGyi   14 (36)
T d1yuza2           4 KFHLCPICGYI   14 (36)
T ss_dssp             CEEECSSSCCE
T ss_pred             CEEECCCCCCE
Confidence            34556666544